WorldWideScience

Sample records for bacterial ecological strategies

  1. Bacterial Ecology

    DEFF Research Database (Denmark)

    Fenchel, Tom

    2011-01-01

    Bacterial ecology is concerned with the interactions between bacteria and their biological and nonbiological environments and with the role of bacteria in biogeochemical element cycling. Many fundamental properties of bacteria are consequences of their small size. Thus, they can efficiently exploit...

  2. Soil-covered strategy for ecological restoration alters the bacterial community structure and predictive energy metabolic functions in mine tailings profiles.

    Science.gov (United States)

    Li, Yang; Sun, Qingye; Zhan, Jing; Yang, Yang; Wang, Dan

    2017-03-01

    Native soil amendment has been widely used to stabilize mine tailings and speed up the development of soil biogeochemical functions before revegetation; however, it remains poorly understood about the response of microbial communities to ecological restoration of mine tailings with soil-covered strategy. In this study, microbial communities along a 60-cm profile were investigated in mine tailings during ecological restoration of two revegetation strategies (directly revegetation and native soil covered) with different plant species. The mine tailings were covered by native soils as thick as 40 cm for more than 10 years, and the total nitrogen, total organic carbon, water content, and heavy metal (Fe, Cu, and Zn) contents in the 0-40 cm intervals of profiles were changed. In addition, increased microbial diversity and changed microbial community structure were also found in the 10-40 cm intervals of profiles in soil-covered area. Soil-covered strategy rather than plant species and soil depth was the main factor influencing the bacterial community, which explained the largest portion (29.96%) of the observed variation. Compared directly to revegetation, soil-covered strategy exhibited the higher relative abundance of Acidobacteria and Deltaproteobacteria and the lower relative abundance of Bacteroidetes, Gemmatimonadetes, Betaproteobacteria, and Gammaproteobacteria. PICRUSt analysis further demonstrated that soil-covered caused energy metabolic functional changes in carbon, nitrogen, and sulfur metabolism. Given all these, the soil-covered strategy may be used to fast-track the establishment of native microbial communities and is conducive to the rehabilitation of biogeochemical processes for establishing native plant species.

  3. Water Saving Strategies & Ecological Modernisation

    DEFF Research Database (Denmark)

    Hoffmann, Birgitte; Jensen, Jesper Ole; Elle, Morten

    2005-01-01

    -tainable water management. The paper focuses on the experiences from different water saving initiatives carried out since the mid 80s relating them to some central aspects of Ecological Modernisation theories: · Demands for tools and targets · New tasks and roles for suppliers, consumers and stakeholders...... as a frame for understanding resource manage-ment. The water management in Copenhagen has in recent years undergone a rather radi-cal transition. Along with strong drivers for resource management in the region the mu-nicipal water supplier has tested and implemented a number of initiatives to promote sus...... to 125 l/capita/day in 2002. A series of different strategies, targets and tools have been implemented: Emphasizing demand side instead of supply side, using and communicating indicators, formulating goals for reducing water consumption and developing learning processes in water management. A main...

  4. Water Saving Strategies & Ecological Modernisation

    DEFF Research Database (Denmark)

    Hoffmann, Birgitte; Jensen, Jesper Ole; Elle, Morten

    2005-01-01

    as a frame for understanding resource manage-ment. The water management in Copenhagen has in recent years undergone a rather radi-cal transition. Along with strong drivers for resource management in the region the mu-nicipal water supplier has tested and implemented a number of initiatives to promote sus......-tainable water management. The paper focuses on the experiences from different water saving initiatives carried out since the mid 80s relating them to some central aspects of Ecological Modernisation theories: · Demands for tools and targets · New tasks and roles for suppliers, consumers and stakeholders...... and the emergence of a new group of intermediary actors · The changing logics of sustainability and the development of storylines The ecological modernist discourse implies a participatory approach, by which citizens are made co-responsible and included in efforts towards a sustainable development; however...

  5. Bacterial persistence: a winning strategy?

    CERN Document Server

    Schinazi, Rinaldo B

    2011-01-01

    It has long been known that antibiotic treatment will not completely kill off a bacteria population. For many species a small fraction of bacteria is not sensitive to antibiotics. These bacteria are said to persist. Recently it has been shown that persistence is not a permanent state and that in fact a bacterium can switch back and forth between persistent and non persistent states. We introduce two stochastic models for bacteria persistence. In both models there are mass killings of non persistent bacteria at certain times. The first model has deterministic killing times and the second one has random killing times. Both models suggest that persistence may be a successful strategy for a wide range of parameter values.

  6. Animals in a bacterial world: opportunities for chemical ecology.

    Science.gov (United States)

    Cantley, Alexandra M; Clardy, Jon

    2015-07-01

    This Viewpoint article provides a brief and selective summary of research on the chemical ecology underlying symbioses between bacteria and animals. Animals engage in multiple highly specialized interactions with bacteria that reflect their long coevolutionary history. The article focuses on a few illustrative but hardly exhaustive examples in which bacterially produced small molecules initiate a developmental step with important implications for the evolution of animals, provide signals for the maturation of mammalian immune systems, and furnish chemical defenses against microbial pathogens.

  7. Sustainable strategies for treatment of bacterial infections

    DEFF Research Database (Denmark)

    Molin, Søren

    2014-01-01

    Resistance to antibiotics and the consequential failures of treatment based on antibiotics makes microbial infections a major threat to human health. This problem combined with rapidly increasing life-style disease problems challenge our healtcare system as well as the pharma industry, and if we do...... not in a foreseeable future develop novel approaches and strategies to combat bacterial infections, many people will be at risk of dying from even trivial infections for which we until recently had highly effective antibiotics. We have for a number of years investigated chronic bacterial lung infections in patients...... suffering from cystic fibrosis. These infections are optimal model scenarios for studies of antibiotic resistance development and microbial adaptation, and we suggest that this information should be useful when designing new anti-microbial strategies. In this respect it will be important to choose...

  8. [Recent advances in marine bacterial ecology--a review].

    Science.gov (United States)

    Wang, Xin; Zhou, Yanyan; Zheng, Tianling

    2010-03-01

    The role of marine bacteria playing in the marine ecosystem and the biogeochemical cycles of carbon, and the advances in microbial loop research were reviewed in this paper. The community structure and function and especially the bacterial activity in marine environment and the ecological function of phycosphere bacteria in the frequent occurrence area of Harmful algal blooms (HABs) were discussed as well. The importance and urgency to carry out the study on the coupling effect of "microbial loop--HABs--key microbial groups" were suggested based on the need of frontier research topics.

  9. Estimating bacterial diversity for ecological studies: methods, metrics, and assumptions.

    Directory of Open Access Journals (Sweden)

    Julia Birtel

    Full Text Available Methods to estimate microbial diversity have developed rapidly in an effort to understand the distribution and diversity of microorganisms in natural environments. For bacterial communities, the 16S rRNA gene is the phylogenetic marker gene of choice, but most studies select only a specific region of the 16S rRNA to estimate bacterial diversity. Whereas biases derived from from DNA extraction, primer choice and PCR amplification are well documented, we here address how the choice of variable region can influence a wide range of standard ecological metrics, such as species richness, phylogenetic diversity, β-diversity and rank-abundance distributions. We have used Illumina paired-end sequencing to estimate the bacterial diversity of 20 natural lakes across Switzerland derived from three trimmed variable 16S rRNA regions (V3, V4, V5. Species richness, phylogenetic diversity, community composition, β-diversity, and rank-abundance distributions differed significantly between 16S rRNA regions. Overall, patterns of diversity quantified by the V3 and V5 regions were more similar to one another than those assessed by the V4 region. Similar results were obtained when analyzing the datasets with different sequence similarity thresholds used during sequences clustering and when the same analysis was used on a reference dataset of sequences from the Greengenes database. In addition we also measured species richness from the same lake samples using ARISA Fingerprinting, but did not find a strong relationship between species richness estimated by Illumina and ARISA. We conclude that the selection of 16S rRNA region significantly influences the estimation of bacterial diversity and species distributions and that caution is warranted when comparing data from different variable regions as well as when using different sequencing techniques.

  10. Ecological principles underpinning invasive plant management tools and strategies

    Science.gov (United States)

    The broad focus of ecologically-based invasive plant management is to identify and repair the ecological processes facilitating plant invasion. To be useful, however, EBIPM requires that our application of management tools and strategies be based on ecological principles that determine the rate and ...

  11. Hyper-thermophilic aerobic bacterial ecology for space agriculture

    Science.gov (United States)

    Oshima, T.; Kanazawa, S.; Moriya, T.; Ishikawa, Y.; Hashimoto, H.; Yamashita, M.; Space Agriculture Task Force, J.

    A material recycling is one of core issues in engineering for habitation on extraterrestrial bodies such as Mars A new composting system has been developed in Japan which utilizes some thermophilic bacteria to attain higher temperature than normally expected in the ordinary composting system Dead body of rat was found to be eaten up by the thermophilic bacteria under aerated condition and oxidized to carbon dioxide and few other inorganics within two hours Ecology of these composting bacteria is structured on the intensive symbiotic interactions among various species that participate in various reaction networks in a concert Complexity in the composting bacteria might be based on multiple interaction and interdependency among participating species and organisms Species identification and phylogeny of symbiotic bacteria and understanding of their ecology have been made Those bacterial systems are active and durable under temperature high in a range of 80 to 100 r C Biological combustion release heat and temperature goes up when air is fed through the reaction bed Since microbial activity decreases at exceeding temperature and release of heat decreases as well temperature in the reacting bed itself-regulated in the range Even though it should be verified composting bacteria themselves are presumed to be safe for human agricultural plant and animal species Their activity is restricted only to the condition under elevated temperature Their activities depend greatly on their symbiotic partners and extreme environment created by them The

  12. Big Canyon Creek Ecological Restoration Strategy.

    Energy Technology Data Exchange (ETDEWEB)

    Rasmussen, Lynn; Richardson, Shannon

    2007-10-01

    He-yey, Nez Perce for steelhead or rainbow trout (Oncorhynchus mykiss), are a culturally and ecologically significant resource within the Big Canyon Creek watershed; they are also part of the federally listed Snake River Basin Steelhead DPS. The majority of the Big Canyon Creek drainage is considered critical habitat for that DPS as well as for the federally listed Snake River fall chinook (Oncorhynchus tshawytscha) ESU. The Nez Perce Soil and Water Conservation District (District) and the Nez Perce Tribe Department of Fisheries Resources Management-Watershed (Tribe), in an effort to support the continued existence of these and other aquatic species, have developed this document to direct funding toward priority restoration projects in priority areas for the Big Canyon Creek watershed. In order to achieve this, the District and the Tribe: (1) Developed a working group and technical team composed of managers from a variety of stakeholders within the basin; (2) Established geographically distinct sub-watershed areas called Assessment Units (AUs); (3) Created a prioritization framework for the AUs and prioritized them; and (4) Developed treatment strategies to utilize within the prioritized AUs. Assessment Units were delineated by significant shifts in sampled juvenile O. mykiss (steelhead/rainbow trout) densities, which were found to fall at fish passage barriers. The prioritization framework considered four aspects critical to determining the relative importance of performing restoration in a certain area: density of critical fish species, physical condition of the AU, water quantity, and water quality. It was established, through vigorous data analysis within these four areas, that the geographic priority areas for restoration within the Big Canyon Creek watershed are Big Canyon Creek from stream km 45.5 to the headwaters, Little Canyon from km 15 to 30, the mainstem corridors of Big Canyon (mouth to 7km) and Little Canyon (mouth to 7km). The District and the Tribe

  13. Big Canyon Creek Ecological Restoration Strategy.

    Energy Technology Data Exchange (ETDEWEB)

    Rasmussen, Lynn; Richardson, Shannon

    2007-10-01

    He-yey, Nez Perce for steelhead or rainbow trout (Oncorhynchus mykiss), are a culturally and ecologically significant resource within the Big Canyon Creek watershed; they are also part of the federally listed Snake River Basin Steelhead DPS. The majority of the Big Canyon Creek drainage is considered critical habitat for that DPS as well as for the federally listed Snake River fall chinook (Oncorhynchus tshawytscha) ESU. The Nez Perce Soil and Water Conservation District (District) and the Nez Perce Tribe Department of Fisheries Resources Management-Watershed (Tribe), in an effort to support the continued existence of these and other aquatic species, have developed this document to direct funding toward priority restoration projects in priority areas for the Big Canyon Creek watershed. In order to achieve this, the District and the Tribe: (1) Developed a working group and technical team composed of managers from a variety of stakeholders within the basin; (2) Established geographically distinct sub-watershed areas called Assessment Units (AUs); (3) Created a prioritization framework for the AUs and prioritized them; and (4) Developed treatment strategies to utilize within the prioritized AUs. Assessment Units were delineated by significant shifts in sampled juvenile O. mykiss (steelhead/rainbow trout) densities, which were found to fall at fish passage barriers. The prioritization framework considered four aspects critical to determining the relative importance of performing restoration in a certain area: density of critical fish species, physical condition of the AU, water quantity, and water quality. It was established, through vigorous data analysis within these four areas, that the geographic priority areas for restoration within the Big Canyon Creek watershed are Big Canyon Creek from stream km 45.5 to the headwaters, Little Canyon from km 15 to 30, the mainstem corridors of Big Canyon (mouth to 7km) and Little Canyon (mouth to 7km). The District and the Tribe

  14. [An investigation of bacterial ecology and analysis of bacterial resistance to antibiotics in a burn ward in Nanning district].

    Science.gov (United States)

    Li, Hong-mian; Liang, Zi-qian; Liu, Da-en; Meng, Cheng-yue

    2005-04-01

    To investigate the changes in the bacterial ecology and to analyze the bacterial resistance to antibiotics in a burn ward in Nanning district during the past 15 years, so as to provide reference to the clinical management of burn infection under subtropical climate. Five thousand eight hundred and fifty-five strains of bacteria were isolated from the wounds and blood of 2269 burn patients admitted to our hospital from April of 1989 to March of 2004. Kiry-Bauer method was employed for the detection of antibiotic sensitivity test. The bacterial examination and bacterial resistance were analyzed in spans of every five years. Burn patients in our district were mainly infected by the gram negative bacilli (3559 strains, accounting for 60.79%), among which Pseudomonas aeruginosa, Enterobacter cloacae and Nitrate negative bacilli were major ones in every period. Gram positive cocci accounted for 33.99% (1990 strains), which ranked the second, among which Staphylococcus aureus, Staphylococcus epidermidis, and Coagulase negative staphylococci (MRCNS) were the most predominant ones. The bacterial resistance to multiple antibiotics, such as Gentamicin, third generation of Cephalosporin, and Norfloxacin showed a tendency of increase or maintained at high level while the incidence of resistance to Imipenem and Vancomycin was very low. The climate and the way of using antibiotics exerted direct effects on the status of the bacterial ecology and change in bacterial resistance to various antibiotics.

  15. Bacterial otitis media: current vaccine development strategies.

    Science.gov (United States)

    Cripps, Allan W; Kyd, Jennelle

    2003-02-01

    Otitis media is the most common reason for children less than 5 years of age to visit a medical practitioner. Whilst the disease rarely results in death, there is significant associated morbidity. The most common complication is loss of hearing at a critical stage of the development of speech, language and cognitive abilities in children. The cause and pathogenesis of otitis media is multifactorial. Among the contributing factors, the single most important are viral and bacterial infections. Infection with respiratory syncytial virus, influenza viruses, para-influenza viruses, enteroviruses and adenovirus are most commonly associated with acute and chronic otitis media. Streptococcus pneumoniae, non-typeable Haemophilus influenzae and Moraxella catarrhalis are the most commonly isolated bacteria from the middle ears of children with otitis media. Treatment of otitis media has largely relied on the administration of antimicrobials and surgical intervention. However, attention has recently focused on the development of a vaccine. For a vaccine to be effective against bacterial otitis media, it must, at the very least, contain antigens that induce a protective immune response in the middle ear against the three most common infecting bacteria. Whilst over the past decade there has been significant progress in the development of vaccines against invasive S. pneumoniae disease, these vaccines are less efficacious for otitis media. The search for candidate vaccine antigens for non-typeable H. influenzae are well advanced whilst less progress has been made for M. catarrhalis. No human studies have been conducted for non-typeable H. influenzae or M. catarrhalis and the concept of a tribacterial vaccine remains to be tested in animal models. Only when vaccine antigens are determined and an understanding of the immune responses induced in the middle ear by infection and immunization is gained will the formulation of a tribacterial vaccine against otitis media be possible.

  16. Strategies for combating bacterial biofilm infections

    DEFF Research Database (Denmark)

    Wu, Hong; Moser, Claus Ernst; Wang, Heng-Zhuang

    2015-01-01

    Formation of biofilm is a survival strategy for bacteria and fungi to adapt to their living environment, especially in the hostile environment. Under the protection of biofilm, microbial cells in biofilm become tolerant and resistant to antibiotics and the immune responses, which increases the di.......International Journal of Oral Science advance online publication, 12 December 2014; doi:10.1038/ijos.2014.65....

  17. Molecular ecological analysis of planktonic bacterial communities in constructed wetlands invaded by Culex (Diptera: Culicidae) mosquitoes.

    Science.gov (United States)

    Popko, David A; Han, Suk-Kyun; Lanoil, Brian; Walton, William E

    2006-11-01

    The succession of the planktonic bacterial community during the colonization by Culex (Diptera: Culicidae) mosquitoes of 0.1-ha treatment wetlands was studied using denaturing gradient gel electrophoresis (DGGE) methodology. Relationships between apparent bacterial diversity and ecological factors (water quality, total bacterial counts, and immature mosquito abundance) were determined during a 1-mo flooding period. Analysis of DGGE banding patterns indicated that days postflooding and temporal changes in water quality were the primary and secondary determinants, respectively, of diversity in bacterial communities. Lower levels of diversity were associated with later postflood stages and increases in ammoniacal nitrogen concentration and total bacterial counts. Diversity was therefore most similar for bacteria present on the same sampling date at wetland locations with similar flooding regimes and water quality, suggesting that wastewater input was the driving force shaping bacterial communities. Comparatively small changes in bacterial diversity were connected to natural processes as water flowed through the wetlands. Greater immature mosquito abundance coincided with less diverse communities composed of greater total numbers of bacteria. Five individual DGGE bands were directly associated with fluctuations in mosquito production, and an additional 16 bands were associated with hydrological aspects of the environment during the rise and fall of mosquito populations. A marked decline in mosquito numbers 21 d after inundation may have masked associations of bacterial communities and mosquito recruitment into the sparsely vegetated wetlands. DGGE was an effective tool for the characterization of bacteria in mosquito habitat in our study, and its potential application in mosquito ecology is discussed.

  18. Bacterial motility in the sea and its ecological implications

    DEFF Research Database (Denmark)

    Grossart, Hans-Peter; Riemann, Lasse; Azam, F.

    2001-01-01

    Motility could be an important adaptation of heterotrophic bacteria and archaea, and it may have ecological and biogeochemical implications. However, the limited observations so far show that only a small fraction (=10%) of bacteria is motile. We report a systematic 10 mo long field study off......, and heterotrophic nanoflagellates. However, it was positively related with particulate organic carbon throughout diel sampling on 24 to 26 September 1997. During a mesocosm diatom bloom % motile rose sharply as the bloom crashed, suggesting algal detritus may elicit motility. Enhanced % motile resulted in increased...... swimming. Our results show that a variable fraction of marine bacteria is able to respond to loci of organic matter, e.g. organic particles and algae, and that motility underlies dynamic patterns of ecological relationships (symbiosis, competition, parasitism) between bacteria and algae. Since motility may...

  19. Strategies for combating bacterial biofilm infections

    Institute of Scientific and Technical Information of China (English)

    Hong Wu; Claus Moser; Heng-Zhuang Wang; Niels Hiby; Zhi-Jun Song

    2015-01-01

    Formation of biofilm is a survival strategy for bacteria and fungi to adapt to their living environment, especially in the hostile environment. Under the protection of biofilm, microbial cells in biofilm become tolerant and resistant to antibiotics and the immune responses, which increases the difficulties for the clinical treatment of biofilm infections. Clinical and laboratory investigations demonstrated a perspicuous correlation between biofilm infection and medical foreign bodies or indwelling devices. Clinical observations and experimental studies indicated clearly that antibiotic treatment alone is in most cases insufficient to eradicate biofilm infections. Therefore, to effectively treat biofilm infections with currently available antibiotics and evaluate the outcomes become important and urgent for clinicians. The review summarizes the latest progress in treatment of clinical biofilm infections and scientific investigations, discusses the diagnosis and treatment of different biofilm infections and introduces the promising laboratory progress, which may contribute to prevention or cure of biofilm infections. We conclude that, an efficient treatment of biofilm infections needs a well-established multidisciplinary collaboration, which includes removal of the infected foreign bodies, selection of biofilm-active, sensitive and well-penetrating antibiotics, systemic or topical antibiotic administration in high dosage and combinations, and administration of anti-quorum sensing or biofilm dispersal agents.

  20. Plant ecological strategies shift across the Cretaceous-Paleogene boundary.

    Science.gov (United States)

    Blonder, Benjamin; Royer, Dana L; Johnson, Kirk R; Miller, Ian; Enquist, Brian J

    2014-09-01

    The Chicxulub bolide impact caused the end-Cretaceous mass extinction of plants, but the associated selectivity and ecological effects are poorly known. Using a unique set of North Dakota leaf fossil assemblages spanning 2.2 Myr across the event, we show among angiosperms a reduction of ecological strategies and selection for fast-growth strategies consistent with a hypothesized recovery from an impact winter. Leaf mass per area (carbon investment) decreased in both mean and variance, while vein density (carbon assimilation rate) increased in mean, consistent with a shift towards "fast" growth strategies. Plant extinction from the bolide impact resulted in a shift in functional trait space that likely had broad consequences for ecosystem functioning.

  1. Plant ecological strategies shift across the Cretaceous-Paleogene boundary.

    Directory of Open Access Journals (Sweden)

    Benjamin Blonder

    2014-09-01

    Full Text Available The Chicxulub bolide impact caused the end-Cretaceous mass extinction of plants, but the associated selectivity and ecological effects are poorly known. Using a unique set of North Dakota leaf fossil assemblages spanning 2.2 Myr across the event, we show among angiosperms a reduction of ecological strategies and selection for fast-growth strategies consistent with a hypothesized recovery from an impact winter. Leaf mass per area (carbon investment decreased in both mean and variance, while vein density (carbon assimilation rate increased in mean, consistent with a shift towards "fast" growth strategies. Plant extinction from the bolide impact resulted in a shift in functional trait space that likely had broad consequences for ecosystem functioning.

  2. Plant Ecological Strategies Shift Across the Cretaceous–Paleogene Boundary

    Science.gov (United States)

    Blonder, Benjamin; Royer, Dana L.; Johnson, Kirk R.; Miller, Ian; Enquist, Brian J.

    2014-01-01

    The Chicxulub bolide impact caused the end-Cretaceous mass extinction of plants, but the associated selectivity and ecological effects are poorly known. Using a unique set of North Dakota leaf fossil assemblages spanning 2.2 Myr across the event, we show among angiosperms a reduction of ecological strategies and selection for fast-growth strategies consistent with a hypothesized recovery from an impact winter. Leaf mass per area (carbon investment) decreased in both mean and variance, while vein density (carbon assimilation rate) increased in mean, consistent with a shift towards “fast” growth strategies. Plant extinction from the bolide impact resulted in a shift in functional trait space that likely had broad consequences for ecosystem functioning. PMID:25225914

  3. Temporal scaling of bacterial taxa is influenced by both stochastic and deterministic ecological factors.

    Science.gov (United States)

    van der Gast, Christopher J; Ager, Duane; Lilley, Andrew K

    2008-06-01

    Microorganisms operate at a range of spatial and temporal scales acting as key drivers of ecosystem properties. Therefore, many key questions in microbial ecology require the consideration of both spatial and temporal scales. Spatial scaling, in particular the species-area relationship (SAR), has a long history in ecology and has recently been addressed in microbial ecology. However, the temporal analogue of the SAR, the species-time relationship, has received far less attention even in the science of general ecology. Here we focus upon the role of temporal scaling in microbial ecological patterns by coupling molecular characterization of bacterial communities in discrete island (bioreactor) systems with a macroecological approach. Our findings showed that the temporal scaling exponent (slope), and therefore taxa turnover of the bacterial taxa-time relationship decreased as selective pressure (industrial wastewater concentration) increased. Also, as the concentration of industrial wastewater increased across the bioreactors, we observed a gradual switch from stochastic community assembly to more deterministic (niche)-based considerations. The identification of broad-scale statistical patterns is particularly relevant to microbial ecology, as it is frequently difficult to identify individual species or their functions. In this study, we identify wide-reaching statistical patterns of diversity and show that they are shaped by the prevalent underlying ecological factors.

  4. Bacterial ecology of abattoir wastewater treated by an anaerobic digestor

    Directory of Open Access Journals (Sweden)

    Linda Jabari

    2016-03-01

    Full Text Available Abstract Wastewater from an anaerobic treatment plant at a slaughterhouse was analysed to determine the bacterial biodiversity present. Molecular analysis of the anaerobic sludge obtained from the treatment plant showed significant diversity, as 27 different phyla were identified. Firmicutes, Proteobacteria, Bacteroidetes, Thermotogae, Euryarchaeota (methanogens, and msbl6 (candidate division were the dominant phyla of the anaerobic treatment plant and represented 21.7%, 18.5%, 11.5%, 9.4%, 8.9%, and 8.8% of the total bacteria identified, respectively. The dominant bacteria isolated were Clostridium, Bacteroides, Desulfobulbus, Desulfomicrobium, Desulfovibrio and Desulfotomaculum. Our results revealed the presence of new species, genera and families of microorganisms. The most interesting strains were characterised. Three new bacteria involved in anaerobic digestion of abattoir wastewater were published.

  5. Plumage bacterial assemblages in a breeding wild passerine: relationships with ecological factors and body condition.

    Science.gov (United States)

    Saag, Pauli; Tilgar, Vallo; Mänd, Raivo; Kilgas, Priit; Mägi, Marko

    2011-05-01

    Microorganisms have been shown to play an important role in shaping the life histories of animals, and it has recently been suggested that feather-degrading bacteria influence the trade-off between parental effort and self-preening behavior in birds. We studied a wild breeding population of great tits (Parus major) to explore habitat-, seasonal-, and sex-related variation in feather-degrading and free-living bacteria inhabiting the birds' yellow ventral feathers and to investigate associations with body condition. The density and species richness of bacterial assemblages was studied using flow cytometry and ribosomal intergenic spacer analysis. The density of studied bacteria declined between the nest-building period and the first brood. The number of bacterial phylotypes per bird was higher in coniferous habitat, while bacterial densities were higher in deciduous habitat. Free-living bacterial density was positively correlated with female mass; conversely, there was a negative correlation between attached bacterial density and female mass during the period of peak reproductive effort. Bacterial species richness was sex dependent, with more diverse bacterial assemblages present on males than females. Thus, this study revealed that bacterial assemblages on the feathers of breeding birds are affected both by life history and ecological factors and are related to body condition.

  6. Contrasting Ecological Processes and Functional Compositions Between Intestinal Bacterial Community in Healthy and Diseased Shrimp.

    Science.gov (United States)

    Zhu, Jinyong; Dai, Wenfang; Qiu, Qiongfen; Dong, Chunming; Zhang, Jinjie; Xiong, Jinbo

    2016-11-01

    Intestinal bacterial communities play a pivotal role in promoting host health; therefore, the disruption of intestinal bacterial homeostasis could result in disease. However, the effect of the occurrences of disease on intestinal bacterial community assembly remains unclear. To address this gap, we compared the multifaceted ecological differences in maintaining intestinal bacterial community assembly between healthy and diseased shrimps. The neutral model analysis shows that the relative importance of neutral processes decreases when disease occurs. This pattern is further corroborated by the ecosphere null model, revealing that the bacterial community assembly of diseased samples is dominated by stochastic processes. In addition, the occurrence of shrimp disease reduces the complexity and cooperative activities of species-to-species interactions. The keystone taxa affiliated with Alphaproteobacteria and Actinobacteria in healthy shrimp gut shift to Gammaproteobacteria species in diseased shrimp. Changes in intestinal bacterial communities significantly alter biological functions in shrimp. Within a given metabolic pathway, the pattern of enrichment or decrease between healthy and deceased shrimp is correlated with its functional effects. We propose that stressed shrimp are more prone to invasion by alien strains (evidenced by more stochastic assembly and higher migration rate in diseased shrimp), which, in turn, disrupts the cooperative activity among resident species. These findings greatly aid our understanding of the underlying mechanisms that govern shrimp intestinal community assembly between health statuses.

  7. Revisiting life strategy concepts in environmental microbial ecology.

    Science.gov (United States)

    Ho, Adrian; Di Lonardo, D Paolo; Bodelier, Paul L E

    2017-03-01

    Microorganisms are physiologically diverse, possessing disparate genomic features and mechanisms for adaptation (functional traits), which reflect on their associated life strategies and determine at least to some extent their prevalence and distribution in the environment. Unlike animals and plants, there is an unprecedented diversity and intractable metabolic versatility among bacteria, making classification or grouping these microorganisms based on their functional traits as has been done in animal and plant ecology challenging. Nevertheless, based on representative pure cultures, microbial traits distinguishing different life strategies had been proposed, and had been the focus of previous reviews. In the environment, however, the vast majority of naturally occurring microorganisms have yet to be isolated, restricting the association of life strategies to broad phylogenetic groups and/or physiological characteristics. Here, we reviewed the literature to determine how microbial life strategy concepts (i.e. copio- and oligotrophic strategists, and competitor-stress tolerator-ruderals framework) are applied in complex microbial communities. Because of the scarcity of direct empirical evidence elucidating the associated life strategies in complex communities, we rely heavily on observational studies determining the response of microorganisms to (a)biotic cues (e.g. resource availability) to infer microbial life strategies. Although our focus is on the life strategies of bacteria, parallels were drawn from the fungal community. Our literature search showed inconsistency in the community response of proposed copiotrophic- and oligotrophic-associated microorganisms (phyla level) to changing environmental conditions. This suggests that tracking microorganisms at finer phylogenetic and taxonomic resolution (e.g. family level or lower) may be more effective to capture changes in community response and/or that edaphic factors exert a stronger effect in community response

  8. Ecological Limits to Terrestrial Carbon Dioxide Removal Strategies

    Science.gov (United States)

    Smith, L. J.; Torn, M. S.; Jones, A. D.

    2011-12-01

    Carbon dioxide removal from the atmosphere through terrestrial carbon sequestration and bioenergy (biological CDR) is a proposed climate change mitigation strategy. Biological CDR increases the carbon storage capacity of soils and biomass through changes in land cover and use, including reforestation, afforestation, conversion of land to agriculture for biofuels, conversion of degraded land to grassland, and alternative management practices such as conservation tillage. While biological CDR may play a valuable role in future climate change mitigation, many of its proponents fail to account for the full range of biological, biophysical, hydrologic, and economic complexities associated with proposed land use changes. In this analysis, we identify and discuss a set of ecological limits and impacts associated with terrestrial CDR. The capacity of biofuels, soils, and other living biomass to sequester carbon may be constrained by nutrient and water availability, soil dynamics, and local climate effects, all of which can change spatially and temporally in unpredictable ways. Even if CDR is effective at sequestering CO2, its associated land use and land cover changes may negatively impact ecological resources by compromising water quality and availability, degrading soils, reducing biodiversity, displacing agriculture, and altering local climate through albedo and evapotranspiration changes. Measures taken to overcome ecological limitations, such as fertilizer addition and irrigation, may exacerbate these impacts even further. The ecological considerations and quantitative analyses that we present highlight uncertainties introduced by ecological complexity, disagreements between models, perverse economic incentives, and changing environmental factors. We do not reject CDR as a potentially valuable strategy for climate change mitigation; ecosystem protection, restoration, and improved management practices could enhance soil fertility and protect biodiversity while reducing

  9. Strategy for ecologic control in fighting Varroa destructor

    Directory of Open Access Journals (Sweden)

    Stanimirović Zoran

    2007-01-01

    Full Text Available The ectoparasite Varroa destructor is one of the most wide-spread parasites of the honey bee, which is increasing its resistence to traditional synthetic acaricides more and more with each year. New regulations on quality of the European Union ban the presence of residue in bee products, which rules out the use of chemical means in the course of the honey harvest. The concept of ecologic control of Varroa destructor in honey bee colonies implies the complementary use of adequate biotechnical and biophysical measures and treatments using preparations based on etheric oils and organic acids. The combination of these treatments according to the presented strategy makes it possible to keep varroasis under control.

  10. Ultrastructural and molecular characterization of a bacterial symbiosis in the ecologically important scale insect family Coelostomidiidae.

    Science.gov (United States)

    Dhami, Manpreet K; Turner, Adrian P; Deines, Peter; Beggs, Jacqueline R; Taylor, Michael W

    2012-09-01

    Scale insects are important ecologically and as agricultural pests. The majority of scale insect taxa feed exclusively on plant phloem sap, which is carbon rich but deficient in essential amino acids. This suggests that, as seen in the related aphids and psyllids, scale insect nutrition might also depend upon bacterial symbionts, yet very little is known about scale insect-bacteria symbioses. We report here the first identification and molecular characterization of symbiotic bacteria associated with the New Zealand giant scale Coelostomidia wairoensis, using fluorescence in situ hybridization (FISH), transmission electron microscopy (TEM) and 16S rRNA gene-based analysis. Dissection and FISH confirmed the location of the bacteria in large, paired, multilobate organs in the abdominal region of the insect. TEM indicated that the dominant pleomorphic bacteria were confined to bacteriocytes in the sheath-enclosed bacteriome. Phylogenetic analysis revealed the presence of three distinct bacterial types, the bacteriome-associated B-symbiont (Bacteroidetes), an Erwinia-related symbiont (Gammaproteobacteria) and Wolbachia sp. (Alphaproteobacteria). This study extends the current knowledge of scale insect symbionts and is the first microbiological investigation of the ecologically important coelostomidiid scales.

  11. Bacterial adaptation to sublethal antibiotic gradients can change the ecological properties of multitrophic microbial communities.

    Science.gov (United States)

    Friman, Ville-Petri; Guzman, Laura Melissa; Reuman, Daniel C; Bell, Thomas

    2015-05-07

    Antibiotics leak constantly into environments due to widespread use in agriculture and human therapy. Although sublethal concentrations are well known to select for antibiotic-resistant bacteria, little is known about how bacterial evolution cascades through food webs, having indirect effect on species not directly affected by antibiotics (e.g. via population dynamics or pleiotropic effects). Here, we used an experimental evolution approach to test how temporal patterns of antibiotic stress, as well as migration within metapopulations, affect the evolution and ecology of microcosms containing one prey bacterium, one phage and two protist predators. We found that environmental variability, autocorrelation and migration had only subtle effects for population and evolutionary dynamics. However, unexpectedly, bacteria evolved greatest fitness increases to both antibiotics and enemies when the sublethal levels of antibiotics were highest, indicating positive pleiotropy. Crucially, bacterial adaptation cascaded through the food web leading to reduced predator-to-prey abundance ratio, lowered predator community diversity and increased instability of populations. Our results show that the presence of natural enemies can modify and even reverse the effects of antibiotics on bacteria, and that antibiotic selection can change the ecological properties of multitrophic microbial communities by having indirect effects on species not directly affected by antibiotics.

  12. Large-scale targeted metagenomics analysis of bacterial ecological changes in 88 kimchi samples during fermentation.

    Science.gov (United States)

    Lee, Moeun; Song, Jung Hee; Jung, Min Young; Lee, Se Hee; Chang, Ji Yoon

    2017-09-01

    The microbial communities in kimchi vary widely, but the precise effects of differences in region of origin, ingredients, and preparation method on the microbiota are unclear. We analyzed the bacterial community composition of household (n = 69) and commercial (n = 19) kimchi samples obtained from six Korean provinces between April and August 2015. Samples were analyzed by barcoded pyrosequencing targeting the V1-V3 region of the 16S ribosomal RNA gene. The initial pH of the kimchi samples was 5.00-6.39, and the salt concentration was 1.72-4.42%. Except for sampling locality, all categorical variables, i.e., salt concentration, major ingredient, fermentation period, sampling time, and manufacturing process, influenced the bacterial community composition. Particularly, samples were highly clustered by sampling time and salt concentration in non-metric multidimensional scaling plots and an analysis of similarity. These results indicated that the microbial community differed according to fermentation conditions such as salt concentration, major ingredient, fermentation period, and sampling time. Furthermore, fermentation properties, including pH, acidity, salt concentration, and microbial abundance differed between kimchi samples from household and commercial sources. Analyses of changes in bacterial ecology during fermentation will improve our understanding of the biological properties of kimchi, as well as the relationships between these properties and the microbiota of kimchi. Copyright © 2017 Elsevier Ltd. All rights reserved.

  13. Mini-review: Strategies for Variation and Evolution of Bacterial Antigens

    Science.gov (United States)

    Foley, Janet

    2015-01-01

    Across the eubacteria, antigenic variation has emerged as a strategy to evade host immunity. However, phenotypic variation in some of these antigens also allows the bacteria to exploit variable host niches as well. The specific mechanisms are not shared-derived characters although there is considerable convergent evolution and numerous commonalities reflecting considerations of natural selection and biochemical restraints. Unlike in viruses, mechanisms of antigenic variation in most bacteria involve larger DNA movement such as gene conversion or DNA rearrangement, although some antigens vary due to point mutations or modified transcriptional regulation. The convergent evolution that promotes antigenic variation integrates various evolutionary forces: these include mutations underlying variant production; drift which could remove alleles especially early in infection or during life history phases in arthropod vectors (when the bacterial population size goes through a bottleneck); selection not only for any particular variant but also for the mechanism for the production of variants (i.e., selection for mutability); and overcoming negative selection against variant production. This review highlights the complexities of drivers of antigenic variation, in particular extending evaluation beyond the commonly cited theory of immune evasion. A deeper understanding of the diversity of purpose and mechanisms of antigenic variation in bacteria will contribute to greater insight into bacterial pathogenesis, ecology and coevolution with hosts. PMID:26288700

  14. Globalization and sustainable development: a political ecology strategy to realize ecological justice

    OpenAIRE

    Byrne, John; Glover, Leigh; Alrøe, Hugo Fjelsted

    2006-01-01

    Organic agriculture is, like mainstream agriculture, faced with the challenges of globalization and sustainable development. Ecological justice, the fair distribution of livelihoods and environments, has emerged as a key concept in efforts, on the one hand, to resist negative consequences of globalization and ecological modernization and, on the other to propose new agenda and institutional arrangements. This chapter investigates the role that ecological justice as a political ecology strateg...

  15. Patterns of bacteria-host associations suggest different ecological strategies between two reef building cold-water coral species

    Science.gov (United States)

    Meistertzheim, Anne.-Leila; Lartaud, Franck; Arnaud-Haond, Sophie; Kalenitchenko, Dimitri; Bessalam, Manon; Le Bris, Nadine; Galand, Pierre E.

    2016-08-01

    Cold-water corals (CWC) are main ecosystem engineers of the deep sea, and their reefs constitute hot-spots of biodiversity. However, their ecology remains poorly understood, particularly, the nature of the holobiont formed by corals with their associated bacterial communities. Here, we analyzed Madrepora oculata and Lophelia pertusa samples, collected from one location in a Mediterranean canyon in two different seasons (autumn and spring), in order to test for species specificity and temporal stability of the host-bacteria associations. The 16S rRNA sequencing revealed host-specific patterns of bacterial communities associated with L. pertusa and M. oculata, both in terms of community composition and diversity. All analyzed M. oculata polyps exhibited temporally and spatially similar bacterial communities dominated by haplotypes homologous to the known cnidarians-associated genus Endozoicomonas. In contrast, the bacterial communities associated with L. pertusa varied among polyps from the same colony, as well as among distinct colonies and between seasons. While the resilient consortium formed by M. oculata and its bacterial community fit the definition of holobiont, the versatility of the L. pertusa microbiome suggests that this association is more influenced by the environmental conditions or nutritional status. Our results thus highlight distinct host/microbes association strategies for these two closely related Scleractinians sharing the same habitat, suggesting distinct sensitivity to environmental change.

  16. The bacterial species challenge: making sense of genetic and ecological diversity.

    Science.gov (United States)

    Fraser, Christophe; Alm, Eric J; Polz, Martin F; Spratt, Brian G; Hanage, William P

    2009-02-06

    The Bacteria and Archaea are the most genetically diverse superkingdoms of life, and techniques for exploring that diversity are only just becoming widespread. Taxonomists classify these organisms into species in much the same way as they classify eukaryotes, but differences in their biology-including horizontal gene transfer between distantly related taxa and variable rates of homologous recombination-mean that we still do not understand what a bacterial species is. This is not merely a semantic question; evolutionary theory should be able to explain why species exist at all levels of the tree of life, and we need to be able to define species for practical applications in industry, agriculture, and medicine. Recent studies have emphasized the need to combine genetic diversity and distinct ecology in an attempt to define species in a coherent and convincing fashion. The resulting data may help to discriminate among the many theories of prokaryotic species that have been produced to date.

  17. Plant nitrogen-use strategy as a driver of rhizosphere archaeal and bacterial ammonia oxidiser abundance.

    Science.gov (United States)

    Thion, Cécile E; Poirel, Jessica D; Cornulier, Thomas; De Vries, Franciska T; Bardgett, Richard D; Prosser, James I

    2016-07-01

    The influence of plants on archaeal (AOA) and bacterial (AOB) ammonia oxidisers (AO) is poorly understood. Higher microbial activity in the rhizosphere, including organic nitrogen (N) mineralisation, may stimulate both groups, while ammonia uptake by plants may favour AOA, considered to prefer lower ammonia concentration. We therefore hypothesised (i) higher AOA and AOB abundances in the rhizosphere than bulk soil and (ii) that AOA are favoured over AOB in the rhizosphere of plants with an exploitative strategy and high N demand, especially (iii) during early growth, when plant N uptake is higher. These hypotheses were tested by growing 20 grassland plants, covering a spectrum of resource-use strategies, and determining AOA and AOB amoA gene abundances, rhizosphere and bulk soil characteristics and plant functional traits. Joint Bayesian mixed models indicated no increase in AO in the rhizosphere, but revealed that AOA were more abundant in the rhizosphere of exploitative plants, mostly grasses, and less abundant under conservative plants. In contrast, AOB abundance in the rhizosphere and bulk soil depended on pH, rather than plant traits. These findings provide a mechanistic basis for plant-ammonia oxidiser interactions and for links between plant functional traits and ammonia oxidiser ecology. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  18. NaOH-debittering induces changes in bacterial ecology during table olives fermentation.

    Directory of Open Access Journals (Sweden)

    Luca Cocolin

    Full Text Available Limited information is available on the impact of the NaOH treatment on table olive fermentations, and for this reason a polyphasic approach has been adopted here to investigate its effect on the fermentation dynamics and bacterial biodiversity. The microbial counts of the main groups involved in the transformation have not shown any differences, apart from a more prompt start of the fermentation when the olives were subjected to the NaOH treatment. The data produced by culture-independent analyses highlighted that the fermentation of table olives not treated with NaOH is the result of the coexistence of two different ecosystems: the surface of the olives and the brines. A sodium hydroxide treatment not only eliminates this difference, but also affects the bacterial ecology of the olives to a great extent. As proved by high-throughput sequencing, the fermentation of the olives not treated with NaOH was characterized by the presence of halophilic bacteria, which were substituted by Lactobacillus at the later stages of the fermentation, while enterobacteria were dominant when the olives were treated with sodium hydroxide. Higher biodiversity was found for Lactobacillus plantarum isolated during untreated fermentation. Different biotypes were found on the olive surface and in the brines. When the debittering process was carried out, a decrease in the number of L. plantarum biotypes were observed and those originating from the surface of the olive did not differentiate from the ones present in the brines.

  19. Preoperative screening strategies for bacterial vaginosis prior to elective hysterectomy: a cost comparison study.

    Science.gov (United States)

    McElligott, Kara A; Havrilesky, Laura J; Myers, Evan R

    2011-11-01

    The purpose of this study is to compare costs of 3 strategies for women undergoing hysterectomy: (1) test all patients for bacterial vaginosis; treat if positive; (2) treat all patients for bacterial vaginosis; (3) neither test nor treat patients for bacterial vaginosis. For comparison purposes, a fourth strategy is examined: (4) no surgical site infection prophylaxis or bacterial vaginosis treatment. A cost minimization model was created using estimates obtained from the published literature, Medicare reimbursement data, and wholesale drug costs. In the base case, the optimal strategy was to treat all patients for bacterial vaginosis, with a cuff infection rate of 4.0% and mean cost of $593. The "test all patients for bacterial vaginosis; treat if positive" strategy was also inexpensive, with a mean cost of $623 and 4.2% cuff infection rate. "Neither test nor treat patients for bacterial vaginosis" and "no surgical site infection prophylaxis or bacterial vaginosis treatment" were more expensive and less effective than other strategies. This model suggests that consideration should be given to adding metronidazole to standard surgical site infection prophylaxis before hysterectomy. Copyright © 2011 Mosby, Inc. All rights reserved.

  20. Ecological models for regulatory risk assessments of pesticides: Developing a strategy for the future.

    NARCIS (Netherlands)

    Thorbek, P.; Forbes, V.; Heimbach, F.; Hommen, U.; Thulke, H.H.; Brink, van den P.J.

    2010-01-01

    Ecological Models for Regulatory Risk Assessments of Pesticides: Developing a Strategy for the Future provides a coherent, science-based view on ecological modeling for regulatory risk assessments. It discusses the benefits of modeling in the context of registrations, identifies the obstacles that p

  1. Plant-insect interactions under bacterial influence: ecological implications and underlying mechanisms.

    Science.gov (United States)

    Sugio, Akiko; Dubreuil, Géraldine; Giron, David; Simon, Jean-Christophe

    2015-02-01

    Plants and insects have been co-existing for more than 400 million years, leading to intimate and complex relationships. Throughout their own evolutionary history, plants and insects have also established intricate and very diverse relationships with microbial associates. Studies in recent years have revealed plant- or insect-associated microbes to be instrumental in plant-insect interactions, with important implications for plant defences and plant utilization by insects. Microbial communities associated with plants are rich in diversity, and their structure greatly differs between below- and above-ground levels. Microbial communities associated with insect herbivores generally present a lower diversity and can reside in different body parts of their hosts including bacteriocytes, haemolymph, gut, and salivary glands. Acquisition of microbial communities by vertical or horizontal transmission and possible genetic exchanges through lateral transfer could strongly impact on the host insect or plant fitness by conferring adaptations to new habitats. Recent developments in sequencing technologies and molecular tools have dramatically enhanced opportunities to characterize the microbial diversity associated with plants and insects and have unveiled some of the mechanisms by which symbionts modulate plant-insect interactions. Here, we focus on the diversity and ecological consequences of bacterial communities associated with plants and herbivorous insects. We also highlight the known mechanisms by which these microbes interfere with plant-insect interactions. Revealing such mechanisms in model systems under controlled environments but also in more natural ecological settings will help us to understand the evolution of complex multitrophic interactions in which plants, herbivorous insects, and micro-organisms are inserted.

  2. Ecology and biogeography of bacterial communities associated with chloroethene-contaminated aquifers

    Directory of Open Access Journals (Sweden)

    Pierre eRossi

    2012-07-01

    Full Text Available Massive usage, along with careless handling, storage, spills and leakages made chloroethenes (CEs one of the most abundant classes of groundwater contaminants. Anaerobic organohalide-respiring bacteria (OHRB can couple reductive dechlorination of CEs with energy conservation, a central microbial process in (enhanced natural attenuation of CE-contaminated aquifers. Spatial variability of OHRB guild members present in contaminated sites has not yet been investigated in detail and it is not known whether the spatial localization of contaminated sites could impact differentially remediation capacities. The goal of this study was to investigate how spatially-distant microbial communities responded to the presence of CEs. Bacterial communities associated with five geographically distant European CEs-contaminated aquifers were analyzed with terminal-restriction fragment length polymorphism. Numerical ecology tools were used to assess the separate and combined effects on the communities of their spatial localization, their local environmental conditions and their contaminant concentrations. Three spatial scales were used for the assessment of the structuration of the communities as a function of geographical distances, namely at the aquifer scale, at medium (50 km and long (ca. 1000 km distances between aquifers. As a result, bacterial communities were structured with an almost identical contribution by both the geographical position of the aquifer and local environmental variables, especially electron donors and acceptors. The impact of environmental factors decreased with distance between aquifers, with the concomitant increase in importance of a geographical factor. Contrastingly, CEs contributed at a low extent at the medium scale and became important only when all aquifers were considered together, at a large geographical scale, suggesting that distant communities were structured partially by a common niche specialization in organohalide

  3. The influence of bacterial inoculants on the microbial ecology of aerobic spoilage of barley silage.

    Science.gov (United States)

    Inglis, G D; Yanke, L J; Kawchuk, L M; McAllister, T A

    1999-01-01

    The aerobic decomposition of barley silage treated with two inoculants (LacA and LacB) containing mixtures of Lactobacillus plantarum and Enterococcus faecium was investigated over a 28-day period. Initially, yeast and bacterial populations were larger in silage inoculated with LacA than in silage treated with LacB or water alone (control). Differences in the succession of yeasts in silage treated with LacA were observed relative to the other two treatments. From silage treatment with LacA, Issatchenkia orientalis was the most prevalent yeast taxon over all of the sample times, and the filamentous fungus Microascus brevicaulis was also frequently isolated at later sample dates (> or = 14 days). In contrast, Saccharomyces exiguus was the most prominent yeast recovered from silage treated with LacB and water alone on days 2 and 4, although it was supplanted by I. orientalis at later sample times. Successional trends of bacteria were similar for all three treatments. Lactobacillus spp. were initially the most prevalent bacteria isolated, followed by Bacillus spp. (primarily Bacillus pumilus). However, the onset of Bacillus spp. prominence was faster in LacA silage, and Klebsiella planticola was frequently recovered at later sample times (> or = 14 days). More filamentous fungi were recovered from LacA silage on media containing carboxylmethylcellulose, pectin, or xylan. The most commonly isolated taxa were Absidia sp., Aspergillus flavus, Aspergillus fumigatus, Byssochlamys nivea, Monascus ruber, Penicillium brevicompactum, Pseudoallescheria boydii, and M. brevicaulis. The results of this study indicated that the two bacterial inoculants incorporated into barley at the time of ensilage affected the microbial ecology of silage decomposition following exposure to air. However, neither of the microbial inoculants effectively delayed aerobic spoilage of barley silage, and the rate of decomposition of silage treated with one of the inoculants (LacA) was actually enhanced.

  4. A strategy for ecology in an era of globalization

    Science.gov (United States)

    Globalization of labor and capital can increase the rate and extent of global environmental degradation, while enhancing the ability of ecologists to respond rapidly and collaboratively to mitigate these impacts. Nevertheless, ecological research remains focused at local and regional levels, with co...

  5. Progress in the evaluation of transgenic fish for possible ecological risk and its containment strategies

    Institute of Scientific and Technical Information of China (English)

    HU; Wei; WANG; YaPing; ZHU; ZuoYan

    2007-01-01

    Genetically improved transgenic fish possess many beneficial economic traits; however, the commercial aquaculture of transgenic fish has not been performed till date. One of the major reasons for this is the possible ecological risk associated with the escape or release of the transgenic fish. Using a growth hormone transgenic fish with rapid growth characteristics as a subject, this paper analyzes the following: the essence of the potential ecological risks posed by transgenic fish; ecological risk in the current situation due to transgenic fish via one-factor phenotypic and fitness analysis, and mathematical model deduction. Then, it expounds new ideas and the latest findings using an artificially simulated ecosystem for the evaluation of the ecological risks posed by transgenic fish. Further, the study comments on the strategies and principles of controlling these ecological risks by using a triploid approach. Based on these results, we propose that ecological risk evaluation and prevention strategies are indispensable important components and should be accompanied with breeding research in order to provide enlightments for transgenic fish breeding, evaluation of the ecological risks posed by transgenic fish, and development of containment strategies against the risks.

  6. The logic of propagation strategies : Axiomatizing a fragment of organizational ecology in first-order logic

    NARCIS (Netherlands)

    Peli, G; Masuch, M

    1997-01-01

    As a part of a larger effort to apply formal logic to organization science, we axiomatize the theory of propagation strategies (life history strategies) of Organization Ecology. We provide an axiomatic system in first-order logic that derives the theory's predictions as theorems from a set of underl

  7. Ecological and safe driving assistance system: design and strategy

    OpenAIRE

    LUU, HT; Nouveliere, L.; Mammar, S.

    2010-01-01

    This paper presents a new Advanced Driver Assistant System (ADAS) with an ecological aspect (EDAS). A low fuel consumption problem is formulated coupled to a safety problem (longitudinal spacing). Several discussions are conducted concerning the computational time reduction, the choice of an optimization method by comparisons. A fuzzy controller is developed to introduce some safety margins that are integrated in the optimization of the fuel consumption. The simulation results are analyzed to...

  8. FbsA-Driven Fibrinogen Polymerization: A Bacterial ``Deceiving Strategy''

    Science.gov (United States)

    Pierno, Matteo; Maravigna, Laura; Piazza, Roberto; Visai, Livia; Speziale, Pietro

    2006-01-01

    We show that FbsA, a cell wall protein of the bacterium Streptococcus agalactiae, promotes large-scale aggregation of human plasma fibrinogen, leading to the formation of a semiflexible polymerlike network. This extensive aggregation process takes place not only in solution, but also on FbsA-functionalized colloidal particles, and leads to the formation of a thick layer on the bacterial cell wall itself, which becomes an efficient mask against phagocytosis.

  9. Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.

    Science.gov (United States)

    Pinhassi, Jarone; DeLong, Edward F; Béjà, Oded; González, José M; Pedrós-Alió, Carlos

    2016-12-01

    The recognition of a new family of rhodopsins in marine planktonic bacteria, proton-pumping proteorhodopsin, expanded the known phylogenetic range, environmental distribution, and sequence diversity of retinylidene photoproteins. At the time of this discovery, microbial ion-pumping rhodopsins were known solely in haloarchaea inhabiting extreme hypersaline environments. Shortly thereafter, proteorhodopsins and other light-activated energy-generating rhodopsins were recognized to be widespread among marine bacteria. The ubiquity of marine rhodopsin photosystems now challenges prior understanding of the nature and contributions of "heterotrophic" bacteria to biogeochemical carbon cycling and energy fluxes. Subsequent investigations have focused on the biophysics and biochemistry of these novel microbial rhodopsins, their distribution across the tree of life, evolutionary trajectories, and functional expression in nature. Later discoveries included the identification of proteorhodopsin genes in all three domains of life, the spectral tuning of rhodopsin variants to wavelengths prevailing in the sea, variable light-activated ion-pumping specificities among bacterial rhodopsin variants, and the widespread lateral gene transfer of biosynthetic genes for bacterial rhodopsins and their associated photopigments. Heterologous expression experiments with marine rhodopsin genes (and associated retinal chromophore genes) provided early evidence that light energy harvested by rhodopsins could be harnessed to provide biochemical energy. Importantly, some studies with native marine bacteria show that rhodopsin-containing bacteria use light to enhance growth or promote survival during starvation. We infer from the distribution of rhodopsin genes in diverse genomic contexts that different marine bacteria probably use rhodopsins to support light-dependent fitness strategies somewhere between these two extremes.

  10. Current and past strategies for bacterial culture in clinical microbiology.

    Science.gov (United States)

    Lagier, Jean-Christophe; Edouard, Sophie; Pagnier, Isabelle; Mediannikov, Oleg; Drancourt, Michel; Raoult, Didier

    2015-01-01

    A pure bacterial culture remains essential for the study of its virulence, its antibiotic susceptibility, and its genome sequence in order to facilitate the understanding and treatment of caused diseases. The first culture conditions empirically varied incubation time, nutrients, atmosphere, and temperature; culture was then gradually abandoned in favor of molecular methods. The rebirth of culture in clinical microbiology was prompted by microbiologists specializing in intracellular bacteria. The shell vial procedure allowed the culture of new species of Rickettsia. The design of axenic media for growing fastidious bacteria such as Tropheryma whipplei and Coxiella burnetii and the ability of amoebal coculture to discover new bacteria constituted major advances. Strong efforts associating optimized culture media, detection methods, and a microaerophilic atmosphere allowed a dramatic decrease of the time of Mycobacterium tuberculosis culture. The use of a new versatile medium allowed an extension of the repertoire of archaea. Finally, to optimize the culture of anaerobes in routine bacteriology laboratories, the addition of antioxidants in culture media under an aerobic atmosphere allowed the growth of strictly anaerobic species. Nevertheless, among usual bacterial pathogens, the development of axenic media for the culture of Treponema pallidum or Mycobacterium leprae remains an important challenge that the patience and innovations of cultivators will enable them to overcome. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

  11. Improved bacteriophage genome data is necessary for integrating viral and bacterial ecology.

    Science.gov (United States)

    Bibby, Kyle

    2014-02-01

    The recent rise in "omics"-enabled approaches has lead to improved understanding in many areas of microbial ecology. However, despite the importance that viruses play in a broad microbial ecology context, viral ecology remains largely not integrated into high-throughput microbial ecology studies. A fundamental hindrance to the integration of viral ecology into omics-enabled microbial ecology studies is the lack of suitable reference bacteriophage genomes in reference databases-currently, only 0.001% of bacteriophage diversity is represented in genome sequence databases. This commentary serves to highlight this issue and to promote bacteriophage genome sequencing as a valuable scientific undertaking to both better understand bacteriophage diversity and move towards a more holistic view of microbial ecology.

  12. 企业竞争的生态策略研究%Study on Ecological Strategy of Enterprises' Competition

    Institute of Scientific and Technical Information of China (English)

    许芳

    2005-01-01

    The ecological research of enterprises ' competition is the front line of current research of enterprises' competition strategy. This text applies the competition principle of living creature in ecology to research enterprises' competition problems,explains the ecological characteristics of enterprises' competition, such as non-symmetry, crowded effect, density effect,competition-rejective effect, suitable resources niche and red queen effect etc., deduces the ecological model of enterprises'competition, and further analyzes enterprises' competition strategy: strategy R and strategy K, on the basis of enterprises'practices. Therefore enterprises' competition ecosystem theories have further been deepened and enriched.

  13. Biofilm bacterial communities in urban drinking water distribution systems transporting waters with different purification strategies.

    Science.gov (United States)

    Wu, Huiting; Zhang, Jingxu; Mi, Zilong; Xie, Shuguang; Chen, Chao; Zhang, Xiaojian

    2015-02-01

    Biofilm formation in drinking water distribution systems (DWDS) has many adverse consequences. Knowledge of microbial community structure of DWDS biofilm can aid in the design of an effective control strategy. However, biofilm bacterial community in real DWDS and the impact of drinking water purification strategy remain unclear. The present study investigated the composition and diversity of biofilm bacterial community in real DWDSs transporting waters with different purification strategies (conventional treatment and integrated treatment). High-throughput Illumina MiSeq sequencing analysis illustrated a large shift in the diversity and structure of biofilm bacterial community in real DWDS. Proteobacteria, Firmicutes, Bacteroidetes, Actinobacteria, Nitrospirae, and Cyanobacteria were the major components of biofilm bacterial community. Proteobacteria (mainly Alphaproteobacteria, Betaproteobacteria, and Gammaproteobacteria) predominated in each DWDS biofilm, but the compositions of the dominant proteobacterial classes and genera and their proportions varied among biofilm samples. Drinking water purification strategy could shape DWDS biofilm bacterial community. Moreover, Pearson's correlation analysis indicated that Actinobacteria was positively correlated with the levels of total alkalinity and dissolved organic carbon in tap water, while Firmicutes had a significant positive correlation with nitrite nitrogen.

  14. Predicting genetic and ecological characteristics of bacterial species by comparing the trajectories of dN/dS and dI/dS in bacterial genomes.

    Science.gov (United States)

    Feng, Ye; Chiu, Cheng-Hsun

    2014-02-01

    Indel (insertion/deletion) causes gene disruption and is considered to be deleterious like non-synonymous mutation during the evolution of bacterial genomes. The trajectory of dN/dS (the ratio of non-synonymous to synonymous mutation) has been found to decrease exponentially over time, but the trajectory of dI/dS (the ratio of indel to synonymous mutation) has not been thoroughly explored yet. Here we compared the patterns of dN/dS and dI/dS for several bacterial species. The majority of them showed a much steeper dI/dS trajectory than the dN/dS trajectory, suggesting that indel was more deleterious than non-synonymous mutation and therefore was more difficult to fix in genomes. However, the naturally competent bacteria, or those with a much lower genetic barrier for DNA exchange, presented a reverse relationship between dI/dS and dN/dS, indicative of an exceptional ability to tolerate horizontal genetic transfer. The result suggests that plotting of dN/dS and dI/dS trajectories can help to predict the genetic and ecological characteristics of bacterial species.

  15. Bacterial Biofilms and Catheters: A Key to Understanding Bacterial Strategies in Catheter-Associated Urinary Tract Infection

    Directory of Open Access Journals (Sweden)

    J Curtis Nickel

    1992-01-01

    Full Text Available Despite major technological improvements in catheter drainage systems, the indwelling Foley catheter remains the most common cause of nosocomial infection in medical practice. By approaching this common complicated urinary tract infection from the perspective of the biofilm strategy bacteria appear to use to overcome obstacles to produce bacteriuria, one appreciates a new understanding of these infections. An adherent biofilm of bacteria in their secretory products ascends the luminal and external surface of the catheter and drainage system from a contaminated drainage spigot or urethral meatus into the bladder. If the intraluminal route of bacterial ascent is delayed by strict sterile closed drainage or addition of internal modifications to the system, the extraluminal or urethral route assumes greater importance in the development of bacteriuria, but takes significantly longer. Bacterial growth within these thick coherent biofilms confers a large measure of relative resistance to antibiotics even though the individual bacterium remains sensitive, thus accounting for the failure of antibiotic therapy. With disruption of the protective mucous layer of the bladder by mechanical irritation, the bacteria colonizing the catheter can adhere to the bladder’s mucosal surface and cause infection. An appreciation of the role of bacterial biofilms in these infections should suggest future directions for research that may ultimately reduce the risk of catheter-associated infection.

  16. Patchy zooplankton grazing and high energy conversion efficiency: ecological implications of sandeel behavior and strategy

    DEFF Research Database (Denmark)

    Deurs, Mikael van; Christensen, Asbjørn; Rindorf, Anna

    2013-01-01

    Sandeel display strong site-fidelity, and spend most of their life buried in the seabed. This strategy carries important ecological implications. Sandeels save energy when they are not foraging but in return are unable to move substantially and therefore possibly are sensitive to local depletion...... sandeel densities and growth rates per area than larger habitats...

  17. Vaccine strategies against bacterial pathogens in cystic fibrosis patients.

    Science.gov (United States)

    Le Moigne, V; Gaillard, J-L; Herrmann, J-L

    2016-02-01

    A large number of cystic fibrosis pathogens such as bacteria of the Burkholderia cepacia complex, Pseudomonas aeruginosa, or Mycobacterium abscessus are associated with complex therapeutic problems due to their inherent resistance to antibiotics. No vaccine is currently available against those pathogens. Vaccines are therefore crucial to combat these multidrug-resistant bacteria in specific clinical situations including cystic fibrosis. Various strategies may be considered to develop these vaccines. Similar virulence factors are expressed during the infection with various pathogens; they could thus be used as antigen to assess cross-protection. Many clinical trials are currently being conducted to try and develop a prophylactic treatment for patients presenting with cystic fibrosis. Copyright © 2015 Elsevier Masson SAS. All rights reserved.

  18. Life cycle assessment-driven selection of industrial ecology strategies.

    Science.gov (United States)

    Ardente, Fulvio; Cellura, Maurizio; Lo Brano, Valerio; Mistretta, Marina

    2010-01-01

    The paper presents an application of the Life-Cycle Assessment (LCA) to the planning and environmental management of an “eco-industrial cluster.” A feasibility study of industrial symbiosis in southern Italy is carried out, where interlinked companies share subproducts and scraps, services, structures, and plants to reduce the related environmental impact. In particular, the research focuses on new recycling solutions to create open recycling loops in which plastic subproducts and scraps are transferred to external production systems. The main environmental benefits are the reduction of resource depletion, air emissions, and landfilled wastes. The proposed strategies are also economically viable and they suggest cost abatement for the involved companies. This research shows the need for a multidisciplinary approach to data processing and to complexity managing of the investigated systems. In this context, life-cycle thinking is required to be promoted throughout the economy, as well to be as a part of all decisions on products and other criteria such as functionality, health, and safety. The Life-Cycle Assessment approach can be assumed as a methodology for influencing decision makers to make sustainable choices.

  19. A soil-specific agro-ecological strategy for sustainable production in Argentina farm fields

    Science.gov (United States)

    Zamora, Martin; Barbera, Agustin; Castro-Franco, Mauricio; Hansson, Alejandro; Domenech, Marisa

    2017-04-01

    The continuous increment of frequencies and doses of pesticides, glyphosate and fertilizers, the deterioration of the structure, biotic balance and fertility of soils and the ground water pollution are characteristics of the current Argentinian agricultural model. In this context, agro-ecological innovations are needed to develop a real sustainable agriculture, enhancing the food supply. Precision agriculture technologies can strengthen the expansion of agro-ecological farming in experimental farm fields. The aim of this study was to propose a soil-specific agro-ecological strategy for sustainable production at field scale focused on the use of soil sensors and digital soil mapping techniques. This strategy has been developed in 15 hectares transition agro-ecological farm field, located at Barrow Experimental Station (Lat:-38.322844, Lon:-60.25572) Argentina. The strategy included five steps: (i) to measure apparent electrical conductivity (ECa) and elevation within agro-ecological farm field; (ii) to apply a clustering method using MULTISPATI-PCA algorithm to delimitate three soil-specific zones (Z1, Z2 and Z3); (iii) to determine three soil sampling points by zone, using conditioned Latin hypercube method, in addition to elevation and ECa as auxiliary information; (iv) to collect soil samples at 2-10 cm depth in each point and to determine in laboratory: total organic carbon content (TOC), cation-exchange capacity (CEC), pH and phosphorus availability (P-Bray). In addition, soil bulk density (SBD) was measured at 0-20 cm depth. Finally, (v) according to each soil-specific zone, a management strategy was recommended. Important differences in soil properties among zones could suggest that the strategy developed was able to apply an agro ecological soil-specific practice management. pH and P-Bray were significantly (pfertilizer and also rotating plots with high stocking rate. The aim is to increase soil organic matter content and CEC. Furthermore, P content will be

  20. Species Permanence Analysis of an Ecological Model with an Impulsive Control Strategy

    Institute of Scientific and Technical Information of China (English)

    Xiao Mei WANG; Shou Ming ZHONG

    2011-01-01

    In this paper,on the basis of the theories and methods of ecology and ordinary differential equations,an ecological model with an impulsive control strategy is established.By using the theories of impulsive equations,small amplitude perturbation skills and comparison technique,we get the condition which guarantees the global asymptotical stability of the prey-x-eradication and predator-y-eradication periodic solution.It is proved that the system is permanent.Furthermore,numerical simulations are also illustrated which agree well with our theoretical analysis.All these results may be useful in study of the dynamic complexity of ecosystems.

  1. Illustrations with Real Examples of Using Ecological Regulation Strategies Against Crop Pests in China

    Institute of Scientific and Technical Information of China (English)

    Guo Yuyuan; Liang Gemei

    2006-01-01

    In this paper, a series of examples from China, including those using ecological regulation strategies successfully to keep crop pests under control and those making more damages of crop pests caused by wrong cropping systems, crop distributions or extensive cultivation, were given and analyzed. From these, two pieces of experience were enlightened as follows: the first, the reforms of cropping systems and crop distributions must be beneficial to pest control or at least not increase the damage of crop pests; the second, we should further clarify the relationship between population dynamics of pests and cropping system/crop distribution, the basis for correctly laying down the ecological regulation systems.

  2. A bacterial community-based index to assess the ecological status of estuarine and coastal environments

    KAUST Repository

    Aylagas, Eva

    2016-10-23

    Biotic indices for monitoring marine ecosystems are mostly based on the analysis of benthic macroinvertebrate communities. Due to their high sensitivity to pollution and fast response to environmental changes, bacterial assemblages could complement the information provided by benthic metazoan communities as indicators of human-induced impacts, but so far, this biological component has not been well explored for this purpose. Here we performed 16S rRNA gene amplicon sequencing to analyze the bacterial assemblage composition of 51 estuarine and coastal stations characterized by different environmental conditions and human-derived pressures. Using the relative abundance of putative indicator bacterial taxa, we developed a biotic index that is significantly correlated with a sediment quality index calculated on the basis of organic and inorganic compound concentrations. This new index based on bacterial assemblage composition can be a sensitive tool for providing a fast environmental assessment and allow a more comprehensive integrative ecosystem approach for environmental management. © 2016.

  3. A simple yeast-based strategy to identify host cellular processes targeted by bacterial effector proteins.

    Directory of Open Access Journals (Sweden)

    Eran Bosis

    Full Text Available Bacterial effector proteins, which are delivered into the host cell via the type III secretion system, play a key role in the pathogenicity of gram-negative bacteria by modulating various host cellular processes to the benefit of the pathogen. To identify cellular processes targeted by bacterial effectors, we developed a simple strategy that uses an array of yeast deletion strains fitted into a single 96-well plate. The array is unique in that it was optimized computationally such that despite the small number of deletion strains, it covers the majority of genes in the yeast synthetic lethal interaction network. The deletion strains in the array are screened for hypersensitivity to the expression of a bacterial effector of interest. The hypersensitive deletion strains are then analyzed for their synthetic lethal interactions to identify potential targets of the bacterial effector. We describe the identification, using this approach, of a cellular process targeted by the Xanthomonas campestris type III effector XopE2. Interestingly, we discover that XopE2 affects the yeast cell wall and the endoplasmic reticulum stress response. More generally, the use of a single 96-well plate makes the screening process accessible to any laboratory and facilitates the analysis of a large number of bacterial effectors in a short period of time. It therefore provides a promising platform for studying the functions and cellular targets of bacterial effectors and other virulence proteins.

  4. From resource to female defence: the impact of roosting ecology on a bat's mating strategy.

    Science.gov (United States)

    Günther, Linus; Lopez, Marlena D; Knörnschild, Mirjam; Reid, Kyle; Nagy, Martina; Mayer, Frieder

    2016-11-01

    With their extraordinary species richness and diversity in ecological traits and social systems, bats are a promising taxon for testing socio-ecological hypotheses in order to get new insights into the evolution of animal social systems. Regarding its roosting habits, proboscis bats form an extreme by occupying sites which are usually completely exposed to daylight (e.g. tree trunks, vines or rocks). This is accompanied by morphological and behavioural adaptations to remain cryptic in exposed day roosts. With long-term behavioural observations and genetic parentage analyses of individually marked proboscis bats, we assessed its social dispersion and male mating strategy during day and night. Our results reveal nocturnal male territoriality-a strategy which most closely resembles a resource-defence polygyny that is frequent also in other tropical bats. Its contrasting clumped social dispersion during the day is likely to be the result of strong selection for crypsis in exposed roosts and is accompanied by direct female defence in addition to male territoriality. To the best of our knowledge, such contrasting male mating strategies within a single day-night cycle have not been described in a vertebrate species so far and illustrate a possible evolutionary trajectory from resource-defence to female-defence strategy by small ecologically driven evolutionary steps.

  5. Diverse Ecological Strategies Are Encoded by Streptococcus pneumoniae Bacteriocin-Like Peptides.

    Science.gov (United States)

    Miller, Eric L; Abrudan, Monica I; Roberts, Ian S; Rozen, Daniel E

    2016-04-13

    The opportunistic pathogen Streptococcus pneumoniae is commonly carried asymptomatically in the human nasopharynx. Due to high rates of cocolonization with other pneumococcus strains, intraspecific competitive interactions partly determine the carriage duration of strains and thereby their potential to cause disease. These interactions may be mediated by bacteriocins, such as the type IIb bacteriocins encoded by the blp (bacteriocin-like peptide) locus. To understand blp diversity and evolution, we undertook a bioinformatic analysis of 4,418 pneumococcal genomes, including 168 newly sequenced genomes. We describe immense variation at all levels of genomic organization: Gene presence/absence, gene order, and allelic diversity. If we make the extreme and naive hypothesis that assumes all genes in this operon can assort randomly, this variation could lead to 10(15) distinct bacteriocin-related phenotypes, each potentially representing a unique ecological strategy; however, we provide several explanations for why this extreme is not realized. Although rarefaction analysis indicates that the number of unique strategies is not saturated, even after sampling thousands of genomes, we show that the variation is neither unbounded nor random. We delimit three bacteriocin groups, which contain group-specific bacteriocins, immunity genes, and blp operon gene order, and argue that this organization places a constraint on realized ecological strategies. We additionally show that ecological strategy diversity is significantly constrained by pneumococcal phylogeny and clonal structure. By examining patterns of association between alleles within the blp operon, we show that bacteriocin genes, which were believed to function in pairs, can be found with a broad diversity of partner alleles and immunity genes; this overall lack of allelic fidelity likely contributes to the fluid structure of this operon. Our results clarify the diversity of antagonistic ecological strategies in the

  6. Frontiers for research on the ecology of plant-pathogenic bacteria: fundamentals for sustainability: Challenges in Bacterial Molecular Plant Pathology.

    Science.gov (United States)

    Morris, Cindy E; Barny, Marie-Anne; Berge, Odile; Kinkel, Linda L; Lacroix, Christelle

    2017-02-01

    Methods to ensure the health of crops owe their efficacy to the extent to which we understand the ecology and biology of environmental microorganisms and the conditions under which their interactions with plants lead to losses in crop quality or yield. However, in the pursuit of this knowledge, notions of the ecology of plant-pathogenic microorganisms have been reduced to a plant-centric and agro-centric focus. With increasing global change, i.e. changes that encompass not only climate, but also biodiversity, the geographical distribution of biomes, human demographic and socio-economic adaptations and land use, new plant health problems will emerge via a range of processes influenced by these changes. Hence, knowledge of the ecology of plant pathogens will play an increasingly important role in the anticipation and response to disease emergence. Here, we present our opinion on the major challenges facing the study of the ecology of plant-pathogenic bacteria. We argue that the discovery of markedly novel insights into the ecology of plant-pathogenic bacteria is most likely to happen within a framework of more extensive scales of space, time and biotic interactions than those that currently guide much of the research on these bacteria. This will set a context that is more propitious for the discovery of unsuspected drivers of the survival and diversification of plant-pathogenic bacteria and of the factors most critical for disease emergence, and will set the foundation for new approaches to the sustainable management of plant health. We describe the contextual background of, justification for and specific research questions with regard to the following challenges: Development of terminology to describe plant-bacterial relationships in terms of bacterial fitness. Definition of the full scope of the environments in which plant-pathogenic bacteria reside or survive. Delineation of pertinent phylogenetic contours of plant-pathogenic bacteria and naming of strains

  7. Effect of Dietary Protein Levels on Composition of Odorous Compounds and Bacterial Ecology in Pig Manure

    Directory of Open Access Journals (Sweden)

    Sungback Cho

    2015-09-01

    Full Text Available This study was performed to investigate the effect of different levels of dietary crude protein (CP on composition of odorous compounds and bacterial communities in pig manure. A total of 48 male pigs (average initial body weight 45 kg fed diets containing three levels of dietary CP (20%, 17.5%, and 15% and their slurry samples were collected from the pits under the floor every week for one month. Changes in composition of odorous compounds and bacterial communities were analyzed by gas chromatography and 454 FLX titanium pyrosequencing systems, respectively. Levels of phenols, indoles, short chain fatty acid and branched chain fatty acid were lowest (p<0.05 in CP 15% group among three CP levels. Relative abundance of Bacteroidetes phylum and bacterial genera including Leuconostoc, Bacillus, Atopostipes, Peptonphilus, Ruminococcaceae_uc, Bacteroides, and Pseudomonas was lower (p<0.05 in CP 15% than in CP 20% group. There was a positive correlation (p<0.05 between odorous compounds and bacterial genera: phenol, indole, iso-butyric acid, and iso-valeric acid with Atopostipes, p-cresol and skatole with Bacteroides, acetic acid and butyric acid with AM982595_g of Porphyromonadaceae family, and propionic acid with Tissierella. Taken together, administration of 15% CP showed less production of odorous compounds than 20% CP group and this result might be associated with the changes in bacterial communities especially whose roles in protein metabolism.

  8. Microbial ecology-based methods to characterize the bacterial communities of non-model insects.

    Science.gov (United States)

    Prosdocimi, Erica M; Mapelli, Francesca; Gonella, Elena; Borin, Sara; Crotti, Elena

    2015-12-01

    Among the animals of the Kingdom Animalia, insects are unparalleled for their widespread diffusion, diversity and number of occupied ecological niches. In recent years they have raised researcher interest not only because of their importance as human and agricultural pests, disease vectors and as useful breeding species (e.g. honeybee and silkworm), but also because of their suitability as animal models. It is now fully recognized that microorganisms form symbiotic relationships with insects, influencing their survival, fitness, development, mating habits and the immune system and other aspects of the biology and ecology of the insect host. Thus, any research aimed at deepening the knowledge of any given insect species (perhaps species of applied interest or species emerging as novel pests or vectors) must consider the characterization of the associated microbiome. The present review critically examines the microbiology and molecular ecology techniques that can be applied to the taxonomical and functional analysis of the microbiome of non-model insects. Our goal is to provide an overview of current approaches and methods addressing the ecology and functions of microorganisms and microbiomes associated with insects. Our focus is on operational details, aiming to provide a concise guide to currently available advanced techniques, in an effort to extend insect microbiome research beyond simple descriptions of microbial communities.

  9. Microbial interactions involving sulfur bacteria : implications for the ecology and evolution of bacterial communities

    NARCIS (Netherlands)

    Overmann, J; van Gemerden, H

    2000-01-01

    A major goal of microbial ecology is the identification and characterization of those microorganisms which govern transformations in natural ecosystems. This review summarizes our present knowledge of microbial interactions in the natural sulfur cycle. Central to the discussion is the recent progres

  10. Microbial interactions involving sulfur bacteria : implications for the ecology and evolution of bacterial communities

    NARCIS (Netherlands)

    Overmann, J; van Gemerden, H

    2000-01-01

    A major goal of microbial ecology is the identification and characterization of those microorganisms which govern transformations in natural ecosystems. This review summarizes our present knowledge of microbial interactions in the natural sulfur cycle. Central to the discussion is the recent

  11. Spring phenology of ecological productivity contributes to the use of looped migration strategies by birds.

    Science.gov (United States)

    La Sorte, Frank A; Fink, Daniel; Hochachka, Wesley M; DeLong, John P; Kelling, Steve

    2014-10-22

    Migration is a common strategy used by birds that breed in seasonal environments. The patterns and determinants of migration routes, however, remain poorly understood. Recent empirical analyses have demonstrated that the locations of two North America migration flyways (eastern and western) shift seasonally, reflecting the influence of looped migration strategies. For the eastern but not western flyway, seasonal variation in atmospheric circulation has been identified as an explanation. Here, we test an alternative explanation based on the phenology of ecological productivity, which may be of greater relevance in western North America, where phenology is more broadly dictated by elevation. Migrants in the western flyway selected lower-elevation spring routes that were wetter, greener and more productive, and higher-elevation autumn routes that were less green and less productive, but probably more direct. Migrants in the eastern flyway showed little season variation but maintained associations with maximum regional greenness. Our findings suggest the annual phenology of ecological productivity is associated with en route timing in both flyways, and the spring phenology of ecological productivity contributes to the use of looped strategies in the western flyway. This fine-tuned spatial synchronization may be disrupted when changing climate induces a mismatch between food availability and needs.

  12. Assessment of soil sealing management responses, strategies, and targets toward ecologically sustainable urban land use management.

    Science.gov (United States)

    Artmann, Martina

    2014-05-01

    Soil sealing has negative impacts on ecosystem services since urban green and soil get lost. Although there is political commitment to stop further sealing, no reversal of this trend can be observed in Europe. This paper raises the questions (1) which strategies can be regarded as being efficient toward ecologically sustainable management of urban soil sealing and (2) who has competences and should take responsibility to steer soil sealing? The analyses are conducted in Germany. The assessment of strategies is carried out using indicators as part of a content analysis. Legal-planning, informal-planning, economic-fiscal, co-operative, and informational strategies are analyzed. Results show that there is a sufficient basis of strategies to secure urban ecosystem services by protecting urban green and reducing urban gray where microclimate regulation is a main target. However, soil sealing management lacks a spatial strategically overview as well as the consideration of services provided by fertile soils.

  13. Impact of different catheter lock strategies on bacterial colonization of permanent central venous hemodialysis catheters.

    Science.gov (United States)

    Erb, Stefan; Widmer, Andreas F; Tschudin-Sutter, Sarah; Neff, Ursula; Fischer, Manuela; Dickenmann, Michael; Grosse, Philipp

    2013-12-01

    Thirty-nine hemodialysis patients with permanent central venous catheters were analyzed for bacterial catheter colonization comparing different catheter-lock strategies. The closed needleless Tego connector with sodium chloride lock solution was significantly more frequently colonized with bacteria than the standard catheter caps with antimicrobially active citrate lock solution (odds ratio, 0.22 [95% confidence interval, 0.07-0.71]; P = .011).

  14. Different season, different strategies: Feeding ecology of two syntopic forest-dwelling salamanders

    Science.gov (United States)

    Sebastiano, Salvidio; Antonio, Romano; Fabrizio, Oneto; Dario, Ottonello; Roberta, Michelon

    2012-08-01

    Trophic niche may be the most important ecological dimension for some vertebrate groups and in particular for terrestrial amphibians, that are important predators of soil invertebrates. In general, resource partitioning occurs between syntopic species with similar ecological niches, and coexistence patterns seem to be regulated by temporal resource variability. However most of the generalization on foraging strategies of terrestrial salamanders are extrapolated from studies on New World temperate species, thus we investigated the seasonal effect of resource variation in an European forest ecosystem, in which two ecologically similar but phylogenetically distinct salamander species are found. The diet of adult and juvenile cave salamanders (Speleomantes strinati), and of adult spectacled salamander (Salamandrina perspicillata) was obtained by stomach flushing, and results showed large seasonal changes both in prey availability and in salamander realised trophic niche. Values of trophic diversity were similar and niche overlaps were large among all salamander groups in spring, during high prey availability. Conversely in autumn, when a two-fold reduction in prey biomass was observed, there was a clear niche partitioning as the smaller S. perspicillata shifted from a generalist to a specialized trophic strategy. Juvenile Speleomantes strinatii, that largely overlapped in size with S. perspicillata, did not show any change in diet, suggesting that the feeding strategies were species-specific and not size-mediated. The observed patterns of variation in feeding ecology indicate that similar predators may react differently to changing prey availability to enhance niche partitioning. We also observed an increased energy intake during autumn for S perspicillata and S. strinatii juveniles, possibly related to differences in microhabitat use and activity patterns.

  15. Bioactive compound synthetic capacity and ecological significance of marine bacterial genus pseudoalteromonas.

    Science.gov (United States)

    Bowman, John P

    2007-12-18

    The genus Pseudoalteromonas is a marine group of bacteria belonging to the class Gammaproteobacteria that has come to attention in the natural product and microbial ecology science fields in the last decade. Pigmented species of the genus have been shown to produce an array of low and high molecular weight compounds with antimicrobial, anti-fouling, algicidal and various pharmaceutically-relevant activities. Compounds formed include toxic proteins, polyanionic exopolymers, substituted phenolic and pyrolle-containing alkaloids, cyclic peptides and a range of bromine-substituted compounds. Ecologically, Pseudoalteromonas appears significant and to date has been shown to influence biofilm formation in various marine econiches; involved in predator-like interactions within the microbial loop; influence settlement, germination and metamorphosis of various invertebrate and algal species; and may also be adopted by marine flora and fauna as defensive agents. Studies have been so far limited to a relatively small subset of strains compared to the known diversity of the genus suggesting that many more discoveries of novel natural products as well as ecological connections these may have in the marine ecosystem remain to be made.

  16. Bacterial adaptation to sublethal antibiotic gradients can change the ecological properties of multitrophic microbial communities

    OpenAIRE

    Friman, Ville-Petri; Guzman, Laura Melissa; Reuman, Daniel C.; Bell, Thomas

    2015-01-01

    Antibiotics leak constantly into environments due to widespread use in agriculture and human therapy. Although sublethal concentrations are well known to select for antibiotic-resistant bacteria, little is known about how bacterial evolution cascades through food webs, having indirect effect on species not directly affected by antibiotics (e.g. via population dynamics or pleiotropic effects). Here, we used an experimental evolution approach to test how temporal patterns of antibiotic stress, ...

  17. Effect of Dietary Protein Levels on Composition of Odorous Compounds and Bacterial Ecology in Pig Manure

    Science.gov (United States)

    Cho, Sungback; Hwang, Okhwa; Park, Sungkwon

    2015-01-01

    This study was performed to investigate the effect of different levels of dietary crude protein (CP) on composition of odorous compounds and bacterial communities in pig manure. A total of 48 male pigs (average initial body weight 45 kg) fed diets containing three levels of dietary CP (20%, 17.5%, and 15%) and their slurry samples were collected from the pits under the floor every week for one month. Changes in composition of odorous compounds and bacterial communities were analyzed by gas chromatography and 454 FLX titanium pyrosequencing systems, respectively. Levels of phenols, indoles, short chain fatty acid and branched chain fatty acid were lowest (pacid, and iso-valeric acid with Atopostipes, p-cresol and skatole with Bacteroides, acetic acid and butyric acid with AM982595_g of Porphyromonadaceae family, and propionic acid with Tissierella. Taken together, administration of 15% CP showed less production of odorous compounds than 20% CP group and this result might be associated with the changes in bacterial communities especially whose roles in protein metabolism. PMID:26194219

  18. Classical Ecological Restoration and its Current Challenges: Assisted Migration as an Adaptation Strategy to Climate Change

    Directory of Open Access Journals (Sweden)

    Pilar A. Gómez-Ruiz

    2017-06-01

    Full Text Available Ecological restoration is a very active area in ecology and of great importance for ecosystems management. Despite of being a relatively young discipline, the classical concepts of restoration seem, at present, impractical considering the great challenges generated by modification and destruction of ecosystems. This is due to anthropic activities (deforestation, change of land use, pollution and global climate change. In the classic definition of restoration, the objective is to recover the degraded ecosystem to the same conditions of a historical reference state. However, nowadays the ecosystems return to a state prior to the disturbances seems unviable, because the thresholds of resilience have already been overcome. Additionally, climate change is causing environmental changes at an unprecedented rate. For this reason, ecological restoration needs to unite efforts of diverse actors to recover ecosystems that can be sustainable and functional in the future, where the species could be able to tolerate the environmental conditions that will exist in the long term. Assisted migration has been proposed as a conservation strategy; it is defined as the translocation of species to new locations outside their known range of distribution. In the current context of loss of diversity and ecosystems, this strategy could be fundamental for the formation of new communities that can later become novel ecosystems where species that are fundamental to the dynamics of ecosystems can persist and, at the same time, recover function, structure and resilience.

  19. Ecological models supporting environmental decision making: a strategy for the future.

    Science.gov (United States)

    Schmolke, Amelie; Thorbek, Pernille; DeAngelis, Donald L; Grimm, Volker

    2010-08-01

    Ecological models are important for environmental decision support because they allow the consequences of alternative policies and management scenarios to be explored. However, current modeling practice is unsatisfactory. A literature review shows that the elements of good modeling practice have long been identified but are widely ignored. The reasons for this might include lack of involvement of decision makers, lack of incentives for modelers to follow good practice, and the use of inconsistent terminologies. As a strategy for the future, we propose a standard format for documenting models and their analyses: transparent and comprehensive ecological modeling (TRACE) documentation. This standard format will disclose all parts of the modeling process to scrutiny and make modeling itself more efficient and coherent. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

  20. Strategies for fitting nonlinear ecological models in R, AD Model Builder, and BUGS

    Science.gov (United States)

    Bolker, Benjamin M.; Gardner, Beth; Maunder, Mark; Berg, Casper W.; Brooks, Mollie; Comita, Liza; Crone, Elizabeth; Cubaynes, Sarah; Davies, Trevor; de Valpine, Perry; Ford, Jessica; Gimenez, Olivier; Kéry, Marc; Kim, Eun Jung; Lennert-Cody, Cleridy; Magunsson, Arni; Martell, Steve; Nash, John; Nielson, Anders; Regentz, Jim; Skaug, Hans; Zipkin, Elise

    2013-01-01

    1. Ecologists often use nonlinear fitting techniques to estimate the parameters of complex ecological models, with attendant frustration. This paper compares three open-source model fitting tools and discusses general strategies for defining and fitting models. 2. R is convenient and (relatively) easy to learn, AD Model Builder is fast and robust but comes with a steep learning curve, while BUGS provides the greatest flexibility at the price of speed. 3. Our model-fitting suggestions range from general cultural advice (where possible, use the tools and models that are most common in your subfield) to specific suggestions about how to change the mathematical description of models to make them more amenable to parameter estimation. 4. A companion web site (https://groups.nceas.ucsb.edu/nonlinear-modeling/projects) presents detailed examples of application of the three tools to a variety of typical ecological estimation problems; each example links both to a detailed project report and to full source code and data.

  1. Ecological models supporting environmental decision making: a strategy for the future

    Science.gov (United States)

    Schmolke, Amelie; Thorbek, Pernille; DeAngelis, Donald L.; Grimm, Volker

    2010-01-01

    Ecological models are important for environmental decision support because they allow the consequences of alternative policies and management scenarios to be explored. However, current modeling practice is unsatisfactory. A literature review shows that the elements of good modeling practice have long been identified but are widely ignored. The reasons for this might include lack of involvement of decision makers, lack of incentives for modelers to follow good practice, and the use of inconsistent terminologies. As a strategy for the future, we propose a standard format for documenting models and their analyses: transparent and comprehensive ecological modeling (TRACE) documentation. This standard format will disclose all parts of the modeling process to scrutiny and make modeling itself more efficient and coherent.

  2. Ecological strategies predict associations between aquatic and genetic connectivity for dryland amphibians.

    Science.gov (United States)

    Mims, Meryl C; Phillipsen, Ivan C; Lytle, David A; Kirk, Emily E Hartfield; Olden, Julian D

    2015-05-01

    The study of how population genetic structure is shaped by attributes of the environment is a central scientific pursuit in ecology and conservation. But limited resources may prohibit landscape genetics studies for many threatened species, particularly given the pace of current environmental change. Understanding the extent to which species' ecological strategies--their life histories, biology, and behavior-predict patterns and drivers of population connectivity is a critical step in evaluating the potential of multi-taxa inference in landscape genetics. We present results of a landscape genetic study of three dryland amphibians: the canyon treefrog (Hyla arenicolor), red-spotted toad (Anaxyrus punctatus), and Mexican spadefoot (Spea multiplicata). These species characterize a range of ecological strategies, driven primarily by different water dependencies, enabling amphibian survival in arid and semiarid environments. We examined a suite of hypothesized relationships between genetic connectivity and landscape connectivity across species. We found a positive relationship between population differentiation and water dependency, e.g., longer larval development periods and site fidelity for reliable water sources. We also found that aquatic connectivity is important for all species, particularly when considered with topography (slope). The effect of spatial scale varied by species, with canyon treefrogs and Mexican spadefoots characterized by relatively consistent results at different scales in contrast to the stark differences in results for red-spotted toads at different scales. Using ecological information to predict relationships between genetic and landscape connectivity is a promising approach for multi-taxa inference and may help inform conservation efforts where single-species genetic studies are not possible.

  3. Economic and ecological optimal strategies of management of the system of regional solid waste disposal

    Directory of Open Access Journals (Sweden)

    Samoylik Marina S.

    2014-01-01

    Full Text Available The article develops an economic and ecological model of optimal management of the system of solid waste disposal at the regional level, identifies its target functions and forms optimisation scenarios of management of this sphere with theoretically optimal parameters’ values. Based on the model of management of the sphere of solid waste disposal the article forms an algorithm of identification of optimal managerial strategies and mechanisms of their realisation, which allows solution of the set tasks of optimisation of development of the sphere of solid waste disposal at a given set of values and parameters of the state of the system for a specific type of life cycle of solid waste and different subjects of this sphere. The developed model has a number of feasible solutions and, consequently, offers selection of the best of them with consideration of target functions. The article conducts a SWOT analysis of the current state of solid waste disposal in the Poltava region and identifies a necessity of development of a relevant strategy on the basis of the developed economic and ecological model with consideration of optimisation of mutually opposite criteria: ecological risk for the population from the sphere of solid waste disposal and total expenditures for this sphere functioning. The article conducts modelling of this situation by basic (current situation and alternative scenarios and finds out that, at this stage, it is most expedient to build in the region four sorting lines and five regional solid waste grounds, while expenditures on this sphere are UAH 62.0 million per year, income from secondary raw material sales – UAH 71.2 per year and reduction of the ecological risk – UAH 13 million per year.

  4. Bioactive Compound Synthetic Capacity and Ecological Significance of Marine Bacterial Genus Pseudoalteromonas

    Directory of Open Access Journals (Sweden)

    John P. Bowman

    2007-12-01

    Full Text Available The genus Pseudoalteromonas is a marine group of bacteria belonging to theclass Gammaproteobacteria that has come to attention in the natural product andmicrobial ecology science fields in the last decade. Pigmented species of the genus havebeen shown to produce an array of low and high molecular weight compounds withantimicrobial, anti-fouling, algicidal and various pharmaceutically-relevant activities.Compounds formed include toxic proteins, polyanionic exopolymers, substitutedphenolic and pyrolle-containing alkaloids, cyclic peptides and a range of bromine-substituted compounds. Ecologically, Pseudoalteromonas appears significant and to datehas been shown to influence biofilm formation in various marine econiches; involved inpredator-like interactions within the microbial loop; influence settlement, germinationand metamorphosis of various invertebrate and algal species; and may also be adopted bymarine flora and fauna as defensive agents. Studies have been so far limited to arelatively small subset of strains compared to the known diversity of the genussuggesting that many more discoveries of novel natural products as well as ecologicalconnections these may have in the marine ecosystem remain to be made.

  5. 烧伤创面细菌生态和抗生素治疗%Bacterial ecology on bum wound and antibacterial agent therapy

    Institute of Scientific and Technical Information of China (English)

    许伟石

    2008-01-01

    The main factors influencing the bacterial ecology on burn wound are the selection of antibacterial agents and systemic antibiotic. Some antibacterial agents more active against P. aeruginosa were developed in 1960s,and the detection rate of P. aeruginosa on burn wound has been declined, and the detection rate of Enter obacter iaceae species and Acineto bacter SPP. has been raised since then. In 1990s,the third generation Cephalospor in was widely used in burn unit and the detection rate of staphylococcuse aureus showed an increased trend. Especially, the positive rate of MRSA was increased significantly. Under the selection pressure of antibacterial agent, the resistant strains are rapidly increased and the antibiotics against opportunistic pathogen on burn wound should be selected continuously. Finally, the bacterial ecology pattern on burn wound is changing incessantly. The result is that the prevalence of infection of muhi-drug resistance strains and opportunistic pathogen appears on burn wound. In order to optimize the antibiotic therapy, the bacterial ecology pattern on burn wound has to be investigated, and the dominant pathogen including invasive and currently prevailing strains in the burn unit also should always be surveyed. In addition, we also should know the mechanisms of bacterial resistance. The .regular surveillance of antibiotic resistance in the clinical isolates is the most important and valuable for understanding the trend of bacterial resistance. The antibiotic therapy should be decided according to the result of susceptibility tests.

  6. Population dynamics of an algal bacterial cenosis in closed ecological system

    Science.gov (United States)

    Pisman, T. I.; Galayda, Ya. V.; Loginova, N. S.

    The paper deals with microalgae-bacteria interrelationships in the "autotroph-heterotroph" aquatic biotic cycle. Explanations of why and how algal-bacterial ecosystems are formed still remain controversial. The paper presents results of experimental and theoretical investigations of the functioning of the algal-bacterial cenosis (the microalga Chlorella vulgaris and concomitant microflora). The Chlorella microbial community is dominated by representatives of the genus Pseudomonas. Experiments with non-sterile batch cultures of Chlorella on Tamiya medium showed that the biomass of microorganisms increases simultaneously with the increase in microalgal biomass. The microflora of Chlorella can grow on organic substances released by photosynthesizing Chlorella. Microorganisms can also use dying Chlorella cells, i.e. form a "producer-reducer" biocycle. To get a better insight into the cenosis-forming role of microalgae, a mathematical model of the "autotroph-heterotroph" aquatic biotic cycle has been constructed, taking into account the utilization of Chlorella photosynthates and dead cells by microorganisms and the contribution of the components to the nitrogen cycle. A theoretical study showed that the biomass of concomitant bacteria grown on glucose and detritus is larger than the biomass of bacteria utilizing only microalgal photosynthates, which agrees well with the experimental data.

  7. Adaptations of a Yucatec Maya Multiple-Use Ecological Management Strategy to Ecotourism

    Directory of Open Access Journals (Sweden)

    Eduardo García-Frapolli

    2008-12-01

    Full Text Available Over the last 40 years, the Yucatan Peninsula has experienced the implementation and promotion of development programs that have economically and ecologically shaped this region of Mexico. Nowadays, tourist development has become the principal catalyst of social, economic, and ecological changes in the region. All these programs, which are based on a specialization rationale, have historically clashed with traditional Yucatec Maya management of natural resources. Using participant observation, informal and semi-structured interviews, and life-history interviews, we carried out an assessment of a Yucatec Maya natural resources management system implemented by three indigenous communities located within a natural protected area. The assessment, intended as an examination of the land-use practices and productive strategies currently implemented by households, was framed within an ecological-economic approach to ecosystems appropriation. To examine the influence of tourism on the multiple-use strategy, we contrasted productive activities among households engaged primarily in ecotourism with those more oriented toward traditional agriculture. Results show that households from these communities allocated an annual average of 586 work days to implement a total of 15 activities in five different land-use units, and that those figures vary significantly in accordance with households' productive strategy (agriculture oriented or service oriented. As the region is quickly becoming an important tourist destination and ecotourism is replacing many traditional activities, we discuss the need for a balance between traditional and alternative economic activities that will allow Yucatec Maya communities to diversify their economic options without compromising existing local management practices.

  8. Defying death: Cellular survival strategies following plasmalemmal injury by bacterial toxins.

    Science.gov (United States)

    Babiychuk, Eduard B; Draeger, Annette

    2015-09-01

    The perforation of the plasmalemma by pore-forming toxins causes an influx of Ca(2+) and an efflux of cytoplasmic constituents. In order to ensure survival, the cell needs to identify, plug and remove lesions from its membrane. Quarantined by membrane folds and isolated by membrane fusion, the pores are removed from the plasmalemma and expelled into the extracellular space. Outward vesiculation and microparticle shedding seem to be the strategies of choice to eliminate toxin-perforated membrane regions from the plasmalemma of host cells. Depending on the cell type and the nature of injury, the membrane lesion can also be taken up by endocytosis and degraded internally. Host cells make excellent use of an initial, moderate rise in intracellular [Ca(2+)], which triggers containment of the toxin-inflicted damage and resealing of the damaged plasmalemma. Additional Ca(2+)-dependent defensive cellular actions range from the release of effector molecules in order to warn neighbouring cells, to the activation of caspases for the initiation of apoptosis in order to eliminate heavily damaged, dysregulated cells. Injury to the plasmalemma by bacterial toxins can be prevented by the early sequestration of bacterial toxins. Artificial liposomes can act as a decoy system preferentially binding and neutralizing bacterial toxins. Copyright © 2015 Elsevier Ltd. All rights reserved.

  9. Effects of an Antibacterial Soap on the Ecology of Aerobic Bacterial Flora of Human Skin

    Science.gov (United States)

    Voss, J. G.

    1975-01-01

    The effects of ad lib use of an antibacterial soap containing 1.0% trichlorocarbanilide and 0.5% trifluoromethyldichlorocarbanilide on the bacterial flora of six skin sites of 132 subjects were measured by comparison with the flora of 93 control subjects who avoided the use of topical antibacterials. Each subject was examined once. The test soap produced significant reductions in geometric mean counts of the total aerobic flora on the back, chest, forearm, calf, and foot; counts were also reduced in the axilla, but not to a significant extent. The overall reduction by the test soap on all sites was 62% (P effect of the soap on the flora. The antibacterial soap also reduced the prevalence of Staphylococcus aureus on the skin, mostly by virtually eliminating it from areas other than the axilla. Partial inhibition of the gram-positive flora was not accompanied by an increase in gram-negative species. The latter were found principally in the axilla; Klebsiella pneumoniae and Enterobacter aerogenes were the species most frequently found. PMID:1103729

  10. Contrasting Strategies of Photosynthetic Energy Utilization Drive Lifestyle Strategies in Ecologically Important Picoeukaryotes

    Directory of Open Access Journals (Sweden)

    Kimberly H. Halsey

    2014-04-01

    Full Text Available The efficiency with which absorbed light is converted to net growth is a key property for estimating global carbon production. We previously showed that, despite considerable evolutionary distance, Dunaliella tertiolecta (Chlorophyceae and Thalassiosira weissflogii (Bacillariophyceae share a common strategy of photosynthetic energy utilization and nearly identical light energy conversion efficiencies. These findings suggested that a single model might be appropriate for describing relationships between measures of phytoplankton production. This conclusion was further evaluated for Ostreococcus tauri RCC1558 and Micromonas pusilla RCC299 (Chlorophyta, Prasinophyceae, two picoeukaryotes with contrasting geographic distributions and swimming abilities. Nutrient-dependent photosynthetic efficiencies in O. tauri were similar to the previously studied larger algae. Specifically, absorption-normalized gross oxygen and carbon production and net carbon production were independent of nutrient limited growth rate. In contrast, all measures of photosynthetic efficiency were strongly dependent on nutrient availability in M. pusilla. This marked difference was accompanied by a diminished relationship between Chla:C and nutrient limited growth rate and a remarkably greater efficiency of gross-to-net energy conversion than the other organisms studied. These results suggest that the cost-benefit of decoupling pigment concentration from nutrient availability enables motile organisms to rapidly exploit more frequent encounters with micro-scale nutrient patches in open ocean environments.

  11. The bacterial community structure of hydrocarbon-polluted marine environments as the basis for the definition of an ecological index of hydrocarbon exposure.

    Science.gov (United States)

    Lozada, Mariana; Marcos, Magalí S; Commendatore, Marta G; Gil, Mónica N; Dionisi, Hebe M

    2014-09-17

    The aim of this study was to design a molecular biological tool, using information provided by amplicon pyrosequencing of 16S rRNA genes, that could be suitable for environmental assessment and bioremediation in marine ecosystems. We selected 63 bacterial genera that were previously linked to hydrocarbon biodegradation, representing a minimum sample of the bacterial guild associated with this process. We defined an ecological indicator (ecological index of hydrocarbon exposure, EIHE) using the relative abundance values of these genera obtained by pyrotag analysis. This index reflects the proportion of the bacterial community that is potentially capable of biodegrading hydrocarbons. When the bacterial community structures of intertidal sediments from two sites with different pollution histories were analyzed, 16 of the selected genera (25%) were significantly overrepresented with respect to the pristine site, in at least one of the samples from the polluted site. Although the relative abundances of individual genera associated with hydrocarbon biodegradation were generally low in samples from the polluted site, EIHE values were 4 times higher than those in the pristine sample, with at least 5% of the bacterial community in the sediments being represented by the selected genera. EIHE values were also calculated in other oil-exposed marine sediments as well as in seawater using public datasets from experimental systems and field studies. In all cases, the EIHE was significantly higher in oiled than in unpolluted samples, suggesting that this tool could be used as an estimator of the hydrocarbon-degrading potential of microbial communities.

  12. The role of the bacterial community in the nutritional ecology of the bulb mite Rhizoglyphus robini (Acari: Astigmata: Acaridae).

    Science.gov (United States)

    Zindel, Renate; Ofek, Maya; Minz, Dror; Palevsky, Eric; Zchori-Fein, Einat; Aebi, Alexandre

    2013-04-01

    The biology of many arthropods can only be understood when their associated microbiome is considered. The nutritional requirements of the bulb mite Rhizoglyphus robini Claparede (Acari: Astigmata: Acaridae) in the laboratory have been shown to be very easily satisfied, and in the field the mites prefer fungus-infected over uninfected plants. To test whether symbiotic bacteria facilitate the survival of R. robini on a temporarily nutritionally unbalanced diet, we investigated the composition of its microbiome. Using 454 pyrosequencing of 16S rRNA gene fragments, 3 genera were found to dominate the bacterial community: Myroides (41.4%), Serratia (11.4%), and Alcaligenes (4.5%); the latter 2 are known to include chitinase-producing species. Laboratory experiments demonstrated that mite fecundity is significantly higher (2 times) on fungus than on controls (sterilized potato dextrose agar and filter paper). Also, when mite homogenate was applied to a chitin layer, the halo produced through degradation was clearly visible, while the saline control did not produce a halo. We thus concluded that R. robini utilizes fungal chitin, at least to a certain extent, as a food source with the help of its associated bacteria. This information supports the general concept of multigenome organisms and the involvement of bacteria in the mite's nutritional ecology.

  13. Ecological and genetic factors influencing the transition between host-use strategies in sympatric Heliconius butterflies.

    Science.gov (United States)

    Merrill, R M; Naisbit, R E; Mallet, J; Jiggins, C D

    2013-09-01

    Shifts in host-plant use by phytophagous insects have played a central role in their diversification. Evolving host-use strategies will reflect a trade-off between selection pressures. The ecological niche of herbivorous insects is partitioned along several dimensions, and if populations remain in contact, recombination will break down associations between relevant loci. As such, genetic architecture can profoundly affect the coordinated divergence of traits and subsequently the ability to exploit novel habitats. The closely related species Heliconius cydno and H. melpomene differ in mimetic colour pattern, habitat and host-plant use. We investigate the selection pressures and genetic basis underlying host-use differences in these two species. Host-plant surveys reveal that H. melpomene specializes on a single species of Passiflora. This is also true for the majority of other Heliconius species in secondary growth forest at our study site, as expected under a model of interspecific competition. In contrast, H. cydno, which uses closed-forest habitats where both Heliconius and Passiflora are less common, appears not to be restricted by competition and uses a broad selection of the available Passiflora. However, other selection pressures are likely involved, and field experiments reveal that early larval survival of both butterfly species is highest on Passiflora menispermifolia, but most markedly so for H. melpomene, the specialist on that host. Finally, we demonstrate an association between host-plant acceptance and colour pattern amongst interspecific hybrids, suggesting that major loci underlying these important ecological traits are physically linked in the genome. Together, our results reveal ecological and genetic associations between shifts in habitat, host use and mimetic colour pattern that have likely facilitated both speciation and coexistence.

  14. A plant nutrition strategy for ex-situ conservation based on "Ecological Similarity"

    Institute of Scientific and Technical Information of China (English)

    WAN Kai-yuan; CHEN Fang; TAO Yong; CHEN Shu-sen; ZHANG Guo-shi

    2008-01-01

    This paper reviewed a large scale conservation work of rare and endangered plants currently conducted in main botanical gardens in China,and the existed,predictable and neglected problems on plant growth and reproduction in ex-situ conservation process.Considered the status quo in plant ex conservation,a nutritional strategy on the plant conservation was proposed based on 'Ecological Similarity'.Its main idea was that the ex-situ conservation plants coming from natural ecosystem were compulsively allocated in the agro-ecosystems and would return to natural ecosystem ultimately.Therefore,research on plant nutrition of the ex-situ conservation plants should neither just pursue yield and quality as that in agro-ecosystems nor merely stay on intrinsic natures without human intervening.We should give attentions to both of their attributes as in natural ecosystems and in agro-ecosystems,i.e.,taking full advantage of plant nutritional measures as in agro-ecosystems to solve actual survival problems of the ex-conservation plants,and ensuring the final goal of returning to nature and playing its ecological role.

  15. Globalization impacts on local commons: multiscale strategies for socioeconomic and ecological resilience

    Directory of Open Access Journals (Sweden)

    Timothy O. Randhir

    2016-02-01

    Full Text Available Globalization can have substantial impact on local commons byreducing sustainability of ecosystems and their vital services. Without effectivelocal institutions, these resources are at high risk of exploitation, especially tofeed global markets. This study proposes a multiscale ecosystem framework(MEF that incorporates information on ecosystem components, socioeconomicprocesses, and their interactions. This includes inter and intra commoninteractions and multi-scale processes to evaluate inter and intra scale changesin socioeconomic and ecological processes of commons. Local participationand multi-disciplinary information are critical in achieving sustainability. Usinga global dataset of selected indicators, a general decline is observable in localcommons that face globalization. The need for increasing resilience of commonsthrough multi-scale adaptation strategies can inform decisions at the national,state and local levels. Increased resilience through ecosystem-based approach canminimize impacts of globalization using information on multiattribute processes,equity considerations, development of robust institutions, and effective strategiesfor adaptation.

  16. Responses of soil microbial biomass and bacterial community structure to closed-off management (an ecological natural restoration measures): A case study of Dongting Lake wetland, middle China.

    Science.gov (United States)

    Dai, Juan; Wu, Haipeng; Zhang, Chang; Zeng, Guangming; Liang, Jie; Guo, Shenglian; Li, Xiaodong; Huang, Lu; Lu, Lunhui; Yuan, Yujie

    2016-09-01

    Soil microbial biomass (SMB) and bacterial community structure, which are critical to global ecosystem and fundamental ecological processes, are sensitive to anthropogenic activities and environmental conditions. In this study, we examined the possible effects of closed-off management (an ecological natural restoration measures, ban on anthropogenic activity, widely employed for many important wetlands) on SMB, soil bacterial community structure and functional marker genes of nitrogen cycling in Dongting Lake wetland. Soil samples were collected from management area (MA) and contrast area (CA: human activities, such as hunting, fishing and draining, are permitted) in November 2013 and April 2014. Soil properties, microbial biomass carbon (MBC), and bacterial community structure were investigated. Comparison of the values of MA and CA showed that SMB and bacterial community diversity of the MA had a significant increase after 7 years closed-off management. The mean value of Shannon-Weiner diversity index of MA and CA respectively were 2.85 and 2.07. The gene copy numbers of 16S rRNA and nosZ of MA were significant higher than those of CA. the gene copy numbers of ammonia-oxidizing archaea (AOA) and nirK of MA were significant lower than those of CA. However, there was no significant change in the gene copy numbers of ammonia-oxidizing bacteria (AOB) and nirS.

  17. New strategies for combination vaccines based on the extended recombinant bacterial ghost system.

    Science.gov (United States)

    Eko, F O; Witte, A; Huter, V; Kuen, B; Fürst-Ladani, S; Haslberger, A; Katinger, A; Hensel, A; Szostak, M P; Resch, S; Mader, H; Raza, P; Brand, E; Marchart, J; Jechlinger, W; Haidinger, W; Lubitz, W

    1999-03-26

    Controlled expression of cloned PhiX174 gene E in Gram-negative bacteria results in lysis of the bacteria by formation of an E-specific transmembrane tunnel structure built through the cell envelope complex. Bacterial ghosts have been produced from a great variety of bacteria and are used as non-living candidate vaccines. In the recombinant ghost system, foreign proteins are attached on the inside of the inner membrane as fusions with specific anchor sequences. Ghosts have a sealed periplasmic space and the export of proteins into this space vastly extents the capacity of ghosts or recombinant ghosts to function as carriers of foreign antigens, immunomodulators or other substances. In addition, S-layer proteins forming shell-like self assembly structures can be expressed in bacterial candidate vaccine strains prior to E-mediated lysis. Such recombinant S-layer proteins carrying inserts of foreign epitopes of up to 600 amino acids within the flexible surface loop areas of the S-layer further extend the possibilities of ghosts as carriers of foreign epitopes. As ghosts do not need the addition of adjuvants to induce immunity in experimental animals they can also be used as carriers or targeting vehicles or as adjuvants in combination with subunit vaccines. Matrixes like dextran which can be used to fill the internal lumen of ghosts can be substituted with various ligands to bind the subunit or other materials of interest. Oral, aerogenic or parenteral immunization of experimental animals with recombinant ghosts induced specific humoral and cellular immune responses against bacterial and target components including protective mucosal immunity. The most relevant advantage of ghosts and recombinant bacterial ghosts as immunogens is that no inactivation procedures that denature relevant immunogenic determinants are employed in the production of ghosts. This fact explains the superior quality of ghosts when compared to other inactivated vaccines. As carriers of foreign

  18. Exposing the Challenges and Coping Strategies of Field-Ecology Graduate Students

    Science.gov (United States)

    Leon-Beck, Mika; Dodick, Jeff

    2012-11-01

    In this paper, we expose the unique challenges confronting graduate field-ecology students and the coping strategies they adopt to overcome such challenges. To do so, we used a qualitative (in vivo) research method that combines interviews, observations and open questionnaires with a group of five Israeli graduate students. The two major challenges that the students faced were the uncontrolled nature of field research (or complexity), and the nature of field setting, which isolated the students from authoritative guidance. In response to these challenges, the students developed a set of research skills which were expressed in this study by a series of three (metacognitive) strategies which we designated as 'protocol-dominated', 'intermediate' or 'field-dominated'. In order to develop such research skills, our subjects rely upon declarative and procedural knowledge. In contrast to declarative knowledge, learned in coursework, procedural knowledge is learned and activated via the situated experience of implementing research in authentic field environments. We also found that fieldwork complexity imposes itself the minute the students step into the field; potentially, this can negatively impact students' motivation. However, as the students accumulate field experience and acquire the knowledge and skills needed to overcome the field's complexity, their motivation improves. Recognizing the unique learning components connected to field research will help novice students better cope with fieldwork challenges, as well as help their advisers in guiding them. This work also has implications for designing inquiry curricula in field sciences for university and high-school students.

  19. An empirical strategy for characterizing bacterial proteomes across species in the absence of genomic sequences.

    Directory of Open Access Journals (Sweden)

    Joshua E Turse

    Full Text Available Global protein identification through current proteomics methods typically depends on the availability of sequenced genomes. In spite of increasingly high throughput sequencing technologies, this information is not available for every microorganism and rarely available for entire microbial communities. Nevertheless, the protein-level homology that exists between related bacteria makes it possible to extract biological information from the proteome of an organism or microbial community by using the genomic sequences of a near neighbor organism. Here, we demonstrate a trans-organism search strategy for determining the extent to which near-neighbor genome sequences can be applied to identify proteins in unsequenced environmental isolates. In proof of concept testing, we found that within a CLUSTAL W distance of 0.089, near-neighbor genomes successfully identified a high percentage of proteins within an organism. Application of this strategy to characterize environmental bacterial isolates lacking sequenced genomes, but having 16S rDNA sequence similarity to Shewanella resulted in the identification of 300-500 proteins in each strain. The majority of identified pathways mapped to core processes, as well as to processes unique to the Shewanellae, in particular to the presence of c-type cytochromes. Examples of core functional categories include energy metabolism, protein and nucleotide synthesis and cofactor biosynthesis, allowing classification of bacteria by observation of conserved processes. Additionally, within these core functionalities, we observed proteins involved in the alternative lactate utilization pathway, recently described in Shewanella.

  20. An Empirical Strategy for Characterizing Bacterial Proteomes across Species in the Absence of Genomic Sequences

    Science.gov (United States)

    Turse, Joshua E.; Marshall, Matthew J.; Fredrickson, James K.; Lipton, Mary S.; Callister, Stephen J.

    2010-01-01

    Global protein identification through current proteomics methods typically depends on the availability of sequenced genomes. In spite of increasingly high throughput sequencing technologies, this information is not available for every microorganism and rarely available for entire microbial communities. Nevertheless, the protein-level homology that exists between related bacteria makes it possible to extract biological information from the proteome of an organism or microbial community by using the genomic sequences of a near neighbor organism. Here, we demonstrate a trans-organism search strategy for determining the extent to which near-neighbor genome sequences can be applied to identify proteins in unsequenced environmental isolates. In proof of concept testing, we found that within a CLUSTAL W distance of 0.089, near-neighbor genomes successfully identified a high percentage of proteins within an organism. Application of this strategy to characterize environmental bacterial isolates lacking sequenced genomes, but having 16S rDNA sequence similarity to Shewanella resulted in the identification of 300–500 proteins in each strain. The majority of identified pathways mapped to core processes, as well as to processes unique to the Shewanellae, in particular to the presence of c-type cytochromes. Examples of core functional categories include energy metabolism, protein and nucleotide synthesis and cofactor biosynthesis, allowing classification of bacteria by observation of conserved processes. Additionally, within these core functionalities, we observed proteins involved in the alternative lactate utilization pathway, recently described in Shewanella. PMID:21103051

  1. Bacterial Exopolysaccharide mediated heavy metal removal: A Review on biosynthesis, mechanism and remediation strategies.

    Science.gov (United States)

    Gupta, Pratima; Diwan, Batul

    2017-03-01

    Heavy metal contamination has been recognized as a major public health risk, particularly in developing countries and their toxicological manifestations are well known. Conventional remediation strategies are either expensive or they generate toxic by-products, which adversely affect the environment. Therefore, necessity for an environmentally safe strategy motivates interest towards biological techniques. One of such most profoundly driven approach in recent times is biosorption through microbial biomass and their products. Extracellular polymeric substances are such complex blend of high molecular weight microbial (prokaryotic and eukaryotic) biopolymers. They are mainly composed of proteins, polysaccharides, uronic acids, humic substances, lipids etc. One of its essential constituent is the exopolysaccharide (EPS) released out of self defense against harsh conditions of starvation, pH and temperature, hence it displays exemplary physiological, rheological and physio-chemical properties. Its net anionic makeup allows the biopolymer to effectively sequester positively charged heavy metal ions. The polysaccharide has been expounded deeply in this article with reference to its biosynthesis and emphasizes heavy metal sorption abilities of polymer in terms of mechanism of action and remediation. It reports current investigation and strategic advancements in dealing bacterial cells and their EPS in diverse forms - mixed culture EPS, single cell EPS, live, dead or immobilized EPS. A significant scrutiny is also involved highlighting the existing challenges that still lie in the path of commercialization. The article enlightens the potential of EPS to bring about bio-detoxification of heavy metal contaminated terrestrial and aquatic systems in highly sustainable, economic and eco-friendly manner.

  2. Climate change adaptation strategies for federal forests of the Pacific Northwest, USA: ecological, policy, and socio-economic perspectives

    Science.gov (United States)

    Thomas A. Spies; Thomas W. Giesen; Frederick J. Swanson; Jerry F. Franklin; Denise Lach; K. Norman. Johnson

    2010-01-01

    Conserving biological diversity in a changing climate poses major challenges for land managers and society. Effective adaptive strategies for dealing with climate change require a socioecological systems perspective. We highlight some of the projected ecological responses to climate change in the Pacific Northwest, U.S.A and identify possible adaptive actions that...

  3. Systematically Altering Bacterial SOS Activity under Stress Reveals Therapeutic Strategies for Potentiating Antibiotics.

    Science.gov (United States)

    Mo, Charlie Y; Manning, Sara A; Roggiani, Manuela; Culyba, Matthew J; Samuels, Amanda N; Sniegowski, Paul D; Goulian, Mark; Kohli, Rahul M

    2016-01-01

    The bacterial SOS response is a DNA damage repair network that is strongly implicated in both survival and acquired drug resistance under antimicrobial stress. The two SOS regulators, LexA and RecA, have therefore emerged as potential targets for adjuvant therapies aimed at combating resistance, although many open questions remain. For example, it is not well understood whether SOS hyperactivation is a viable therapeutic approach or whether LexA or RecA is a better target. Furthermore, it is important to determine which antimicrobials could serve as the best treatment partners with SOS-targeting adjuvants. Here we derived Escherichia coli strains that have mutations in either lexA or recA genes in order to cover the full spectrum of possible SOS activity levels. We then systematically analyzed a wide range of antimicrobials by comparing the mean inhibitory concentrations (MICs) and induced mutation rates for each drug-strain combination. We first show that significant changes in MICs are largely confined to DNA-damaging antibiotics, with strains containing a constitutively repressed SOS response impacted to a greater extent than hyperactivated strains. Second, antibiotic-induced mutation rates were suppressed when SOS activity was reduced, and this trend was observed across a wider spectrum of antibiotics. Finally, perturbing either LexA or RecA proved to be equally viable strategies for targeting the SOS response. Our work provides support for multiple adjuvant strategies, while also suggesting that the combination of an SOS inhibitor with a DNA-damaging antibiotic could offer the best potential for lowering MICs and decreasing acquired drug resistance. IMPORTANCE Our antibiotic arsenal is becoming depleted, in part, because bacteria have the ability to rapidly adapt and acquire resistance to our best agents. The SOS pathway, a widely conserved DNA damage stress response in bacteria, is activated by many antibiotics and has been shown to play central role in

  4. BASIS FOR IMPLEMENTING RESTORATION STRATEGIES: SAN NICOLÁS ZOYATLAN SOCIAL-ECOLOGICAL SYSTEM (GUERRERO, MEXICO

    Directory of Open Access Journals (Sweden)

    Virginia Cervantes Gutiérrez

    2014-06-01

    Full Text Available In Latin America, indigenous communities have been distinguished by continuous marginalization and degradation of their social-ecological systems (SES, and this is the case of San Nicolás Zoyatlan (Guerrero, Mexico. With the purpose of establishing restoration strategies, we conducted an in situ diagnosis to assess the current condition of the community and its disturbance factors. We combined methods of environmental and social sciences to analyze, in diachronic and synchronic contexts, how the SES’s natural resources are used. Results indicate that the chronic ecological disturbance of the SES and agrarian conflicts have contributed to the degradation of vegetation and soil. Thus, vegetation is impoverished, with secondary tropical deciduous forest (TDF shrub vegetation predominating, and the risk of soil degradation is high, despite the inhabitants’ knowledge and appreciation of this resource. To reverse degradation, we defined and established rehabilitation practices with the involvement of inhabitants. These comprised agroforestry systems (AFSs and plantations (PLs on community lands, using 18 native TDF species selected on the basis of local preferences. Our ongoing assessment indicates that after more than a decade, the AFSs and PLs are maintained and managed by the people, as reflected in the current size of plants whose inputs contribute to improve physical and chemical soil characteristics, such as soil aggregate formation, cation exchange capacity and organic matter content. However, we concluded that we need to confirm whether the ecosystem processes and environmental services are recovered and maintained over time, in addition to determining how they have influenced and will continue to influence the socioeconomic factors involved in maintaining rehabilitation practices.

  5. Evaluation of bacterial strategies to promote the bioavailability of polycyclic aromatic hydrocarbons

    Energy Technology Data Exchange (ETDEWEB)

    Johnsen, A.R.; Karlson, U. [Dept. of Environmental Chemistry and Microbiology, National Environmental Research Inst., Roskilde (Denmark)

    2004-07-01

    Polycyclic aromatic hydrocarbon (PAHs)-degrading bacteria may enhance the bioavailability of PAHs by excreting biosurfactants, by production of extracellular polymeric substances, or by forming biofilms. We tested these hypotheses in pure cultures of PAHs-degrading bacterial strains. Most of the strains did not substantially reduce the surface tension when grown on PAHs in liquid shaken cultures. Thus, pseudo-solubilization of PAHs in biosurfactant micelles seems not to be a general strategy for these isolates to enhance PAHs-bioavailability. Three semi-colloid Sphingomonas polysaccharides all increased the solubility of PAHs (Gellan 1.3- to 5.4-fold, Welan 1.8- to 6.0-fold and Rhamsan 2.4- to 9.0-fold). The increases were most pronounced for the more hydrophobic PAHs. The polysaccharide-sorbed PAHs were bioavailable. Mineralization rates of 9-[{sup 14}C]-phenanthrene and 3-[{sup 14}C]-fluoranthene by Sphingobium EPA505, were similar with and without sphingans, indicating that mass-transfer rates from PAHs crystals to the bulk liquid were unaffected by the polysaccharides. Biofilm formation on PAHs crystals may favor the diffusive mass transfer of PAHs from crystals to the bacterial cells. A majority of the PAHs-degraders tested formed biofilms in microtiter wells coated with PAHs crystals. For strains capable of growing on different PAHs; the more soluble the PAHs, the lower the percentage of cells attached. Biofilm formation on PAHs-sources was the predominant mechanism among the tested bacteria to overcome mass transfer limitations when growing on poorly soluble PAHs. (orig.)

  6. Ecological and economic dynamics of the Shunde agricultural system under China's small city development strategy.

    Science.gov (United States)

    Lu, Hongfang; Campbell, Daniel E

    2009-06-01

    The agricultural and industrial development of small cities is the primary environmental management strategy employed to make full use of extra labor in the rural areas of China. The ecological and economic consequences of this development strategy will affect over 100 million people and change the organization of the Chinese landscape. In this study, we examined the agricultural development of Shunde, a small city in Guangdong Province, over the period 1978 until 2000. Our analysis of the ecological and economic dynamics of the agricultural system revealed the dominant role of labor in the intensification of agricultural production, even though the use of fuels, fertilizers and machines also increased during this time. The Shunde agricultural system was examined from both biophysical or donor-based and human utility or receiver-based perspectives, using emergy and economic methods, respectively. After 22 years of urbanization, the Shunde agricultural system was still able to fill 96% of the local demand for agricultural products using only 6% of its total yield compared to using 14% of the total yield in 1978. Aquaculture developed quickly during the study period as grain production decreased. In 2000, the production of fish, pork, and vegetables accounted for 92% of the total emergy output of the system; however, the emergy buying power of the money received in exchange was lower than the emergy contained in the products exported. The excess emergy exported is the basis for a high quality diet delivered to city dwellers at a relatively low price. In the 1980s, the productivity of both land and labor increased; but after 1992 the productivity of labor decreased, causing the efficiency of the whole agricultural system to decrease. We recommend that processing plants be established for the main agricultural products of Shunde to decrease the emergy loss in trading and to increase employment. The effect of including monetized ecosystem services in the balance between

  7. Strategies for managing complex social-ecological systems in the face of uncertainty: examples from South Africa and beyond

    Directory of Open Access Journals (Sweden)

    Reinette (Oonsie Biggs

    2015-03-01

    Full Text Available Improving our ability to manage complex, rapidly changing social-ecological systems is one of the defining challenges of the 21st century. This is particularly crucial if large-scale poverty alleviation is to be secured without undermining the capacity of the environment to support future generations. To address this challenge, strategies that enable judicious management of social-ecological systems in the face of substantive uncertainty are needed. Several such strategies are emerging from the developing body of work on complexity and resilience. We identify and discuss four strategies, providing practical examples of how each strategy has been applied in innovative ways to manage turbulent social-ecological change in South Africa and the broader region: (1 employ adaptive management or comanagement, (2 engage and integrate different perspectives, (3 facilitate self-organization, and (4 set safe boundaries to avoid system thresholds. Through these examples we aim to contribute a basis for further theoretical development, new teaching examples, and inspiration for developing innovative new management strategies in other regions that can help address the considerable sustainability challenges facing society globally.

  8. Approach and Strategy for Performing Ecological Risk Assessments for the Department of Energy Oak Ridge Field Office Environmental Restoration Program

    Energy Technology Data Exchange (ETDEWEB)

    Suter, G.W. II

    1992-01-01

    This technical memorandum provides guidance for planning and performing ecological risk assessments (ERAs) on the Oak Ridge Reservation (ORR). This work was performed under Work Breakdown Structure 1.4.12.2.3.04.07.02 (Activity Data Sheet 8304) and meets an Environmental Restoration Program milestone for FY 95. The strategy discussed in this report is consistent with the overall strategy for site management and Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) compliance developed for the ORR and relevant U.S. Environmental Protection Agency documents and guidance. The general approach and strategy presented herein was developed for the ORR, but it could be applicable to other complex CERCLA sites that possess significant ecological resources.

  9. The social structure and strategies of delphinids: predictions based on an ecological framework.

    Science.gov (United States)

    Gowans, Shannon; Würsig, Bernd; Karczmarski, Leszek

    2007-01-01

    Dolphins live in complex social groupings with a wide variety of social strategies. In this chapter we investigate the role that differing habitats and ecological conditions have played in the evolution of delphinid social strategies. We propose a conceptual framework for understanding natural patterns of delphinid social structure in which the spatial and temporal predictability of resources influences the ranging patterns of individuals and communities. The framework predicts that when resources are spatially and temporally predictable, dolphins should remain resident in relatively small areas. Predictable resources are often found in complex inshore environments where dolphins may hide from predators or avoid areas with high predator density. Additionally, available food resources may limit group size. Thus, we predict that there are few benefits to forming large groups and potentially many benefits to being solitary or in small groups. Males may be able to sequester solitary females, controlling mating opportunities. Observations of inshore populations of bottlenose dolphins (Tursiops sp.) and island-associated spinner dolphins (Stenella longirostris) seem to fit this pattern well, along with forest-dwelling African antelope and primates such as vervets (Cercopithicus aethiops), baboons (Papio sp.), macaques (Macaca sp.) and chimpanzees (Pan troglodytes). In contrast, the framework predicts that when resources such as food are unpredictable, individuals must range further to find the necessary resources. Forming groups may be the only strategy available to avoid predation, especially in the open ocean. Larger home ranges are likely to support a greater number of individuals; however, prey is often sparsely distributed, which may act to reduce foraging competition. Cooperative foraging and herding of prey schools may be advantageous, potentially facilitating the formation of long-term bonds. Alternately, individuals may display many short-term affiliations

  10. Bacterial Exopolysaccharide mediated heavy metal removal: A Review on biosynthesis, mechanism and remediation strategies

    Directory of Open Access Journals (Sweden)

    Pratima Gupta

    2017-03-01

    Full Text Available Heavy metal contamination has been recognized as a major public health risk, particularly in developing countries and their toxicological manifestations are well known. Conventional remediation strategies are either expensive or they generate toxic by-products, which adversely affect the environment. Therefore, necessity for an environmentally safe strategy motivates interest towards biological techniques. One of such most profoundly driven approach in recent times is biosorption through microbial biomass and their products. Extracellular polymeric substances are such complex blend of high molecular weight microbial (prokaryotic and eukaryotic biopolymers. They are mainly composed of proteins, polysaccharides, uronic acids, humic substances, lipids etc. One of its essential constituent is the exopolysaccharide (EPS released out of self defense against harsh conditions of starvation, pH and temperature, hence it displays exemplary physiological, rheological and physio-chemical properties. Its net anionic makeup allows the biopolymer to effectively sequester positively charged heavy metal ions. The polysaccharide has been expounded deeply in this article with reference to its biosynthesis and emphasizes heavy metal sorption abilities of polymer in terms of mechanism of action and remediation. It reports current investigation and strategic advancements in dealing bacterial cells and their EPS in diverse forms – mixed culture EPS, single cell EPS, live, dead or immobilized EPS. A significant scrutiny is also involved highlighting the existing challenges that still lie in the path of commercialization. The article enlightens the potential of EPS to bring about bio-detoxification of heavy metal contaminated terrestrial and aquatic systems in highly sustainable, economic and eco-friendly manner.

  11. Strategies for the recovery of active proteins through refolding of bacterial inclusion body proteins

    Directory of Open Access Journals (Sweden)

    Rinas Ursula

    2004-09-01

    Full Text Available Abstract Recent advances in generating active proteins through refolding of bacterial inclusion body proteins are summarized in conjunction with a short overview on inclusion body isolation and solubilization procedures. In particular, the pros and cons of well-established robust refolding techniques such as direct dilution as well as less common ones such as diafiltration or chromatographic processes including size exclusion chromatography, matrix- or affinity-based techniques and hydrophobic interaction chromatography are discussed. Moreover, the effect of physical variables (temperature and pressure as well as the presence of buffer additives on the refolding process is elucidated. In particular, the impact of protein stabilizing or destabilizing low- and high-molecular weight additives as well as micellar and liposomal systems on protein refolding is illustrated. Also, techniques mimicking the principles encountered during in vivo folding such as processes based on natural and artificial chaperones and propeptide-assisted protein refolding are presented. Moreover, the special requirements for the generation of disulfide bonded proteins and the specific problems and solutions, which arise during process integration are discussed. Finally, the different strategies are examined regarding their applicability for large-scale production processes or high-throughput screening procedures.

  12. Combined agro-ecological strategies for adaptation of organic horticultural systems to climate change in Mediterranean environment

    Directory of Open Access Journals (Sweden)

    Mariangela Diacono

    2016-05-01

    Full Text Available Agricultural biodiversity and related agro-ecological measures could play a crucial role in the agro-ecosystems adaptation to climate changes, thus sustaining crop production. The objective of this study was to assess the suitability (and the best combination of agro-ecological techniques as potential resilience strategies in organic horticultural systems in a Mediterranean environment. A long-term experimental device called MITIORG (Long-term climatic change adaptation in organic farming: synergistic combination of hydraulic arrangement, crop rotations, agro-ecological service crops and agronomic techniques is set-up at Metaponto (MT, testing the following agro-ecological measures as well as organic and conservation farming best practices: i hydraulic arrangement by a kind of ridge-furrow system; ii cash crop rotations; iii agro-ecological service crops (ASC introduction; iv ASC termination techniques (green manure vs roller crimper; and v organic fertilisation. The research here reported was carried out during the 2014-2015 season in the MITIORG device, on a rotation of cauliflower (Brassica oleracea L. and tomato (Solanum lycopersicum L. crops. A detailed description of the scientific cognitive process that led to setup of the device, its components explanation, as well as preliminary yield results are reported. The outcomes suggest that organic vegetable cropping systems, designed following agro-ecological principles, are able to sustain yield of cash crops in rotation, in spite of changes in temperature and rainfall of the study site. Experimental data available in the next years will allow a deeper integrated analysis of the manifold effects of agro-ecological measures on horticultural systems.

  13. Bacterial contamination of blood components: Norwegian strategies in identifying donors with higher risk of inducing septic transfusion reactions in recipients.

    Science.gov (United States)

    Klausen, Sofie Strand; Hervig, Tor; Seghatchian, Jerard; Reikvam, Håkon

    2014-10-01

    Bacterial contamination of blood and its cellular components remains the most common microbiological cause of transfusion associated morbidity and mortality, even in developed countries. This yet unresolved complication is seen more often in platelet transfusions, as platelet concentrates are stored at room temperature, in gas permeable containers with constant agitation, which support bacterial proliferation from relatively low undetectable levels, at the beginning of storage time, to relatively high virulent bacteria titers and endotoxin generation, at the end of shelf life. Accordingly, several combined strategies are introduced and implemented to at least reduce the potential risk of bacterial contaminated products for transfusion. These embody: improved donors arms cleaning; bacterial avoidance by diversion of the first portion of collection; reducing bacterial growth through development of newer storage media for longer platelet shelf life; bacterial load reduction by leucoreduction/viral inactivation, in some countries and eliminating the use potentially contaminated units through screening, through current available testing procedures, though none are not yet fully secure. We have not seen the same reduction in bacterial associated transfusion infections as we have observed for the sharp drop in transfusion associated transmission rates of HIV and hepatitis B and C. This great viral reduction is not only caused by the introduction of newer and more sensitive and specific detection methods for different viruses, but also the identification of donor risk groups through questionnaires and personal interviews. While search for more efficient methods for identifying potential blood donors with asymptomatic bacteremia, as well as a better way for detecting bacteria in stored blood components will be continuing, it is necessary to establish more standardized guidelines for the recognition the adverse reactions in recipients of potentially contaminated units

  14. Quorum-sensing blockade as a strategy for enhancing host defences against bacterial pathogens

    DEFF Research Database (Denmark)

    Bjarnsholt, Thomas; Givskov, Michael Christian

    2007-01-01

    is likely to increase the susceptibility of the infecting organism to host defences and its clearance from the host. The use of QS signal blockers to attenuate bacterial pathogenicity, rather than bacterial growth, is therefore highly attractive, particularly with respect to the emergence of multi...

  15. Quorum-Sensing Blockade As A Strategy for Enhancing Host Defences Against Bacterial Pathogens

    DEFF Research Database (Denmark)

    Bjarnsholt, Thomas; Givskov, Michael Christian

    2007-01-01

    is likely to increase the susceptibility of the infecting organism to host defences and its clearance from the host. The use of QS signal blockers to attenuate bacterial pathogenicity, rather than bacterial growth, is therefore highly attractive, particularly with respect to the emergence of multi...

  16. Plant functional traits suggest a change in novel ecological strategies for dominant species in the stages of forest succession.

    Science.gov (United States)

    Chai, Yongfu; Yue, Ming; Wang, Mao; Xu, Jinshi; Liu, Xiao; Zhang, Ruichang; Wan, Pengcheng

    2016-03-01

    In forest succession, the ecological strategies of the dominant species that are based on functional traits are important in the determination of both the mechanisms and the potential directions of succession. Thirty-one plots were established in the Loess Plateau region of northern Shaanxi in China. Fifteen leaf traits were measured for the 31 dominant species that represented the six stages of succession, and the traits included four that were related to morphology, seven to stoichiometry and four to physiological ecology. The species from the different successional stages had different patterns of distribution of the traits, and different key traits predicted the turnover of the species during succession. The ash and the cellulose contents were key regulatory factors of species turnover in the early successional communities, and the trait niche forces in sugar and leaf dry mass content might become more important with the progression of succession. When only the three herb stages were considered, a progressive replacement of the ruderal by the competitive-ruderal species occurred in the intermediate stages of succession, which was followed by the stress-tolerant-competitive or the competitive-stress tolerant-ruderal strategists late in the succession. Thus, the different species that occurred in the different stages of succession shared different trait-based ecological strategies. Additionally, these differences occurred concomitantly with a shift toward competitive-stress tolerant-ruderal strategies.

  17. Affect in response to stressors and coping strategies: an ecological momentary assessment study of borderline personality disorder.

    Science.gov (United States)

    Chaudhury, Sadia R; Galfalvy, Hanga; Biggs, Emily; Choo, Tse-Hwei; Mann, J John; Stanley, Barbara

    2017-01-01

    Affect instability is a core symptom of borderline personality disorder (BPD). Ecological momentary assessment allows for an understanding of real-time changes in affect in response to various daily stressors. The purpose of this study was to explore changes in affect in response to specific stressors and coping strategies in subjects with BPD utilizing ecological momentary assessment (EMA) methodology. Subjects (n = 50) with BPD were asked to complete real-time assessments about stressors experienced, affect felt, and coping strategies employed six times per day for a 1-week period. Mixed effect regression models were used to measure the effect of stressors and coping strategies on affect change. While most stressors led to experiencing more negative affect, only being in a disagreement was independently associated with increased negative affect. Among coping strategies, only doing something good for oneself independently reduced negative affect, controlling for all other coping strategies used. These findings provide valuable insights into affective instability in BPD and can help inform treatment with individuals with the disorder.

  18. TUGAI: An integrated simulation tool for ecological assessment of alternative water management strategies in a degraded river delta.

    Science.gov (United States)

    Schlüter, Maja; Rüger, Nadja; Savitsky, Andre G; Novikova, Nina M; Matthies, Michael; Lieth, Helmut

    2006-10-01

    The development of ecologically sound water allocation strategies that account for the needs of riverine ecosystems is a pressing issue, especially in semiarid river basins. In the Aral Sea Basin, a search for strategies to mitigate ecological and socioeconomic deterioration has been in process since the early 1990s. The Geographic Information System-based simulation tool TUGAI has been developed to support the policy determination process by providing a simple, problem-oriented method to assess ecological effects of alternative water management strategies for the Amudarya River. It combines a multiobjective water allocation model with simple, spatially explicit statistical and rule-based models of landscape dynamics. Changes in environmental conditions are evaluated by a fuzzy habitat suitability index for Populus euphratica, which is the dominant species of the characteristic riverine Tugai forests. Water management scenarios can be developed by altering spatiotemporal water distribution in the delta area or the amount of water inflow into the delta. Outcomes of scenario analysis are qualitative comparisons of the ecological effects of different options for a time period of up to 28 years. The given approach utilizes different types of knowledge, from quantitative hydrological data to qualitative local expert knowledge. The main purpose of the tool is to integrate the knowledge in a comprehensive way to make it available for discussions on alternative policies in moderated workshops with stakeholders. In this article, the modules of the tool, their integration, and three hypothetical scenarios are presented. Based on the experience gained when developing the TUGAI tool, we propose that the general framework can be transferred to other areas where tradeoffs in water allocation between the environment and other water users are of major concern. The potential for a simulation tool to structure and inform a complex resource management situation by involving local

  19. Bacterial community composition and predicted functional ecology of sponges, sediment and seawater from the thousand islands reef complex, West Java, Indonesia.

    Science.gov (United States)

    de Voogd, Nicole J; Cleary, Daniel F R; Polónia, Ana R M; Gomes, Newton C M

    2015-04-01

    In the present study, we assessed the composition of Bacteria in four biotopes namely sediment, seawater and two sponge species (Stylissa massa and Xestospongia testudinaria) at four different reef sites in a coral reef ecosystem in West Java, Indonesia. In addition to this, we used a predictive metagenomic approach to estimate to what extent nitrogen metabolic pathways differed among bacterial communities from different biotopes. We observed marked differences in bacterial composition of the most abundant bacterial phyla, classes and orders among sponge species, water and sediment. Proteobacteria were by far the most abundant phylum in terms of both sequences and Operational Taxonomic Units (OTUs). Predicted counts for genes associated with the nitrogen metabolism suggested that several genes involved in the nitrogen cycle were enriched in sponge samples, including nosZ, nifD, nirK, norB and nrfA genes. Our data show that a combined barcoded pyrosequencing and predictive metagenomic approach can provide novel insights into the potential ecological functions of the microbial communities. Not only is this approach useful for our understanding of the vast microbial diversity found in sponges but also to understand the potential response of microbial communities to environmental change.

  20. Poverty alleviation strategies in eastern China lead to critical ecological dynamics.

    Science.gov (United States)

    Zhang, Ke; Dearing, John A; Dawson, Terence P; Dong, Xuhui; Yang, Xiangdong; Zhang, Weiguo

    2015-02-15

    Poverty alleviation linked to agricultural intensification has been achieved in many regions but there is often only limited understanding of the impacts on ecological dynamics. A central need is to observe long term changes in regulating and supporting services as the basis for assessing the likelihood of sustainable agriculture or ecological collapse. We show how the analyses of 55 time-series of social, economic and ecological conditions can provide an evolutionary perspective for the modern Lower Yangtze River Basin region since the 1950s with powerful insights about the sustainability of modern ecosystem services. Increasing trends in provisioning ecosystem services within the region over the past 60 years reflect economic growth and successful poverty alleviation but are paralleled by steep losses in a range of regulating ecosystem services mainly since the 1980s. Increasing connectedness across the social and ecological domains after 1985 points to a greater uniformity in the drivers of the rural economy. Regime shifts and heightened levels of variability since the 1970s in local ecosystem services indicate progressive loss of resilience across the region. Of special concern are water quality services that have already passed critical transitions in several areas. Viewed collectively, our results suggest that the regional social-ecological system passed a tipping point in the late 1970s and is now in a transient phase heading towards a new steady state. However, the long-term relationship between economic growth and ecological degradation shows no sign of decoupling as demanded by the need to reverse an unsustainable trajectory.

  1. Conception of ecological strategy «Olympic sport for maintainance of nature» during leadthrough of winter Olympic Games 2022 in Ukrainian Carpathians

    Directory of Open Access Journals (Sweden)

    Tsyganenko O.I.

    2012-12-01

    Full Text Available An analysis is conducted scientific and to scientifically-methodical literatures on issue of ecological strategy of organization and leadthrough of winter Olympiads. Conception of ecological strategy of organization and leadthrough of winter Olympiad is developed 2022 (Ukraine, Carpathians. It was offered, that ecological strategy of organization and leadthrough of Olympiad had an ecological motto «Olympic sport for the maintainance of nature». Strategy included the ways of decision of problem of negative influence of global change of climate on the olympic winter types of sport. The problems of providing of ecological safety of sporting activity are considered in relation to a man and wild-life. Solution is offered questions of the ecological marketing, management and ecological inlightening. The ecological ground of choice of Lvov is conducted as a city of organizer of winter Olympiad 2022. As a mountain-skier center a mountain-skier complex Borzhava, located in the area Carpathians of Ukraine, is offered.

  2. Bacterial Resistance---Challenges and Strategies%细菌耐药--挑战与对策

    Institute of Scientific and Technical Information of China (English)

    倪明; 田德英

    2016-01-01

    当前细菌耐药形势严峻。中国细菌耐药性监测网( CHINET)数据显示,革兰阴性菌分离率逐年上升,其中耐碳青霉烯类肠杆菌科细菌不仅检出率迅速上升,且多为广泛耐药菌株;广泛耐药甚至泛耐药非发酵菌,尤其是鲍曼不动杆菌的分离率仍较高,这些高度耐药的革兰阴性菌所致感染病死率高,已引起临床广泛关注。多重耐药革兰阳性菌方面,耐甲氧西林金黄色葡萄球菌和凝固酶阴性葡萄球菌平均检出率仍较高,耐万古霉素肠球菌分离率稳定,我国尚未分离出耐万古霉素金黄色葡萄球菌。了解本地细菌耐药的流行病学变化,才能根据患者病情制定恰当的用药策略。对于重症感染患者,及早使用抗菌药物、恰当降阶梯治疗可以降低病死率。合理的给药方式可使抗菌药物发挥最大作用,同时注意抗菌药物诱导内毒素释放等影响因素才能提高细菌感染性疾病治疗效果,降低不良反应。%Bacterial resistance to antibiotics is currently a serious health concern.According to the data from the surveil-lance of bacterial resistance in China ( CHINET) ,the isolation rates of gram-negative bacteria have been rising annually. Among the gram-negative organisms, the isolation rate of Carbapenem-resistant enterobacteriaceae, especially extensive drug-resistant strains,has been increasing rapidly.The isolation rate of extensive drug-resistant or pandrug-resistant non-fermenting bacteria,es-pecially Acinetobacter baumanii,is still relatively high.These extensive drug-resistant gram-negative bacteria cause high mortality, which has drawn great attention in clinical settings.On the part of multidrug-assistant gram-positive bacteria,the isolation rate of vancomycin-resistant enterococci remains stable but rates of methicillin-resistant Staphylococcus aureus and coagulase-negative staphylococci are still high.Staphylococcal strains have not yet

  3. Ecology, economics and political will: the vicissitudes of malaria strategies in Asia.

    Science.gov (United States)

    Kidson, C; Indaratna, K

    1998-06-01

    The documented history of malaria in parts of Asia goes back more than 2,000 years, during which the disease has been a major player on the socioeconomic stage in many nation states as they waxed and waned in power and prosperity. On a much shorter time scale, the last half century has seen in microcosm a history of large fluctuations in endemicity and impact of malaria across the spectrum of rice fields and rain forests, mountains and plains that reflect the vast ecological diversity inhabited by this majority aggregation of mankind. That period has seen some of the most dramatic changes in social and economic structure, in population size, density and mobility, and in political structure in history: all have played a part in the changing face of malaria in this extensive region of the world. While the majority of global malaria cases currently reside in Africa, greater numbers inhabited Asia earlier this century before malaria programs savored significant success, and now Asia harbors a global threat in the form of the epicenter of multidrug resistant Plasmodium falciparum which is gradually encompassing the tropical world. The latter reflects directly the vicissitudes of economic change over recent decades, particularly the mobility of populations in search of commerce, trade and personal fortunes, or caught in the misfortunes of physical conflicts. The period from the 1950s to the 1990s has witnessed near "eradication" followed by resurgence of malaria in Sri Lanka, control and resurgence in India, the influence of war and postwar instability on drug resistance in Cambodia, increase in severe and cerebral malaria in Myanmar during prolonged political turmoil, the essential disappearance of the disease from all but forested border areas of Thailand where it remains for the moment intractable, the basic elimination of vivax malaria from many provinces of central China. Both positive and negative experiences have lessons to teach in the debate between eradication

  4. A Case for Developing Place-Based Fire Management Strategies from Traditional Ecological Knowledge

    Directory of Open Access Journals (Sweden)

    Lily A. Ray

    2012-09-01

    Full Text Available Sustainability science promotes place-based resource management because natural processes vary among ecosystems. When local science is limited, land managers may be forced to generalize from other ecosystems that function differently. One proposed solution is to draw upon the traditional ecological knowledge that indigenous groups have accumulated through resource use. Integrating traditional ecological knowledge with conventional resource management is difficult, especially when the two offer competing explanations of local environments. Although resource managers may discount traditional ecological knowledge that contradicts conventional resource management, we investigate the possibility that these disagreements can arise when nonlocal resource management generalizations displace place-based science. Specifically, we compare claims about wildfires made by Athabascan forest users residing in or near the Koyukuk National Wildlife Refuge and in the U.S. Fish and Wildlife Service fire management plan for that refuge. We focus on two aspects of fire ecology and management: the drivers of landscape flammability and the feasibility of using wildfires and prescribed burns to achieve resource management objectives. The results indicated that some disagreements came from reliance of the federal fire management plan on generalized national narratives at the expense of place-based science. We propose that in some cases, conflicts between traditional ecological knowledge and conventional resource management, rather than indicating a dead end, can identify topics requiring in-depth, place-based research.

  5. New weapons to fight old enemies: novel strategies for the (biocontrol of bacterial biofilms in the food industry

    Directory of Open Access Journals (Sweden)

    Laura Maria Coughlan

    2016-10-01

    Full Text Available Biofilms are microbial communities characterized by their adhesion to solid surfaces and the production of a matrix of exopolymeric substances (EPS, consisting of polysaccharides, proteins, DNA and lipids, which surround the microorganisms lending structural integrity and a unique biochemical profile to the biofilm. Biofilm formation enhances the ability of the producer/s to persist in a given environment. Pathogenic and spoilage bacterial species capable of forming biofilms are a significant problem for the healthcare and food industries, as their biofilm-forming ability protects them from common cleaning processes and allows them to remain in the environment post-sanitation. In the food industry, persistent bacteria colonize the inside of mixing tanks, vats and tubing, compromising food safety and quality. Strategies to overcome bacterial persistence through inhibition of biofilm formation or removal of mature biofilms are therefore necessary. Current biofilm control strategies employed in the food industry (cleaning and disinfection, material selection and surface preconditioning, plasma treatment, ultrasonication, etc., although effective to a certain point, fall short of biofilm control. Efforts have been explored, mainly with a view to their application in pharmaceutical and healthcare settings, which focus on targeting molecular determinants regulating biofilm formation. Their application to the food industry would greatly aid efforts to eradicate undesirable bacteria from food processing environments and, ultimately, from food products. These approaches, in contrast to bactericidal approaches, exert less selective pressure which in turn would reduce the likelihood of resistance development. A particularly interesting strategy targets quorum sensing systems, which regulate gene expression in response to fluctuations in cell-population density governing essential cellular processes including biofilm formation. This review article discusses

  6. New Weapons to Fight Old Enemies: Novel Strategies for the (Bio)control of Bacterial Biofilms in the Food Industry

    Science.gov (United States)

    Coughlan, Laura M.; Cotter, Paul D.; Hill, Colin; Alvarez-Ordóñez, Avelino

    2016-01-01

    Biofilms are microbial communities characterized by their adhesion to solid surfaces and the production of a matrix of exopolymeric substances, consisting of polysaccharides, proteins, DNA and lipids, which surround the microorganisms lending structural integrity and a unique biochemical profile to the biofilm. Biofilm formation enhances the ability of the producer/s to persist in a given environment. Pathogenic and spoilage bacterial species capable of forming biofilms are a significant problem for the healthcare and food industries, as their biofilm-forming ability protects them from common cleaning processes and allows them to remain in the environment post-sanitation. In the food industry, persistent bacteria colonize the inside of mixing tanks, vats and tubing, compromising food safety and quality. Strategies to overcome bacterial persistence through inhibition of biofilm formation or removal of mature biofilms are therefore necessary. Current biofilm control strategies employed in the food industry (cleaning and disinfection, material selection and surface preconditioning, plasma treatment, ultrasonication, etc.), although effective to a certain point, fall short of biofilm control. Efforts have been explored, mainly with a view to their application in pharmaceutical and healthcare settings, which focus on targeting molecular determinants regulating biofilm formation. Their application to the food industry would greatly aid efforts to eradicate undesirable bacteria from food processing environments and, ultimately, from food products. These approaches, in contrast to bactericidal approaches, exert less selective pressure which in turn would reduce the likelihood of resistance development. A particularly interesting strategy targets quorum sensing systems, which regulate gene expression in response to fluctuations in cell-population density governing essential cellular processes including biofilm formation. This review article discusses the problems associated

  7. New Weapons to Fight Old Enemies: Novel Strategies for the (Bio)control of Bacterial Biofilms in the Food Industry.

    Science.gov (United States)

    Coughlan, Laura M; Cotter, Paul D; Hill, Colin; Alvarez-Ordóñez, Avelino

    2016-01-01

    Biofilms are microbial communities characterized by their adhesion to solid surfaces and the production of a matrix of exopolymeric substances, consisting of polysaccharides, proteins, DNA and lipids, which surround the microorganisms lending structural integrity and a unique biochemical profile to the biofilm. Biofilm formation enhances the ability of the producer/s to persist in a given environment. Pathogenic and spoilage bacterial species capable of forming biofilms are a significant problem for the healthcare and food industries, as their biofilm-forming ability protects them from common cleaning processes and allows them to remain in the environment post-sanitation. In the food industry, persistent bacteria colonize the inside of mixing tanks, vats and tubing, compromising food safety and quality. Strategies to overcome bacterial persistence through inhibition of biofilm formation or removal of mature biofilms are therefore necessary. Current biofilm control strategies employed in the food industry (cleaning and disinfection, material selection and surface preconditioning, plasma treatment, ultrasonication, etc.), although effective to a certain point, fall short of biofilm control. Efforts have been explored, mainly with a view to their application in pharmaceutical and healthcare settings, which focus on targeting molecular determinants regulating biofilm formation. Their application to the food industry would greatly aid efforts to eradicate undesirable bacteria from food processing environments and, ultimately, from food products. These approaches, in contrast to bactericidal approaches, exert less selective pressure which in turn would reduce the likelihood of resistance development. A particularly interesting strategy targets quorum sensing systems, which regulate gene expression in response to fluctuations in cell-population density governing essential cellular processes including biofilm formation. This review article discusses the problems associated

  8. Approach and strategy for performing ecological risk assessments for the U.S. Department of Energy`s Oak Ridge Reservation: 1994 revision

    Energy Technology Data Exchange (ETDEWEB)

    Suter, G.W. II; Sample, B.E.; Jones, D.S.; Ashwood, T.L.

    1994-08-01

    This report provides guidance for planning and performing ecological risk assessments on the Oak Ridge Reservation (ORR). The tiered approach to ecological risk assessment has been implemented, generic conceptual models have been developed, and a general approach for developing ecological assessment endpoints and measurement endpoints has been agreed upon. The document also includes changes in terminology to agree with the terminology in the US Environmental Protection Agency`s (EPA`s) framework for ecological risk assessment. Although ecological risks are equal in regulatory importance to human health risks, formal procedures for ecological risk assessment are poorly developed. This report will provide specific guidance and promote the use of consistent approaches for ecological risk assessments at individual sites on the ORR. The strategy discussed in this report is consistent with the overall strategy for site management and Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) compliance and with relevant EPA guidance. The general approach and strategy presented herein was developed for the ORR, but it should be applicable to other complex CERCLA sites that possess significant ecological resources.

  9. Poverty alleviation strategies in eastern China lead to critical ecological dynamics

    DEFF Research Database (Denmark)

    2015-01-01

    are water quality services that have already passed critical transitions in several areas. Viewed collectively, our results suggest that the regional social– ecological systempassed a tipping point in the late 1970s and is nowin a transient phase heading towards a new steady state. However, the long...... connectedness across the social and ecological domains after 1985 points to a greater uniformity in the drivers of the rural economy. Regime shifts and heightened levels of variability since the 1970s in local ecosystem services indicate progressive loss of resilience across the region. Of special concern...

  10. Development and validation of an rDNA operon based primer walking strategy applicable to de novo bacterial genome finishing.

    Directory of Open Access Journals (Sweden)

    Alexander William Eastman

    2015-01-01

    Full Text Available Advances in sequencing technology have drastically increased the depth and feasibility of bacterial genome sequencing. However, little information is available that details the specific techniques and procedures employed during genome sequencing despite the large numbers of published genomes. Shotgun approaches employed by second-generation sequencing platforms has necessitated the development of robust bioinformatics tools for in silico assembly, and complete assembly is limited by the presence of repetitive DNA sequences and multi-copy operons. Typically, re-sequencing with multiple platforms and laborious, targeted Sanger sequencing are employed to finish a draft bacterial genome. Here we describe a novel strategy based on the identification and targeted sequencing of repetitive rDNA operons to expedite bacterial genome assembly and finishing. Our strategy was validated by finishing the genome of Paenibacillus polymyxa strain CR1, a bacterium with potential in sustainable agriculture and bio-based processes. An analysis of the 38 contigs contained in the P. polymyxa strain CR1 draft genome revealed 12 repetitive rDNA operons with varied intragenic and flanking regions of variable length, unanimously located at contig boundaries and within contig gaps. These highly similar but not identical rDNA operons were experimentally verified and sequenced simultaneously with multiple, specially designed primer sets. This approach also identified and corrected significant sequence rearrangement generated during the initial in silico assembly of sequencing reads. Our approach reduces the required effort associated with blind primer walking for contig assembly, increasing both the speed and feasibility of genome finishing. Our study further reinforces the notion that repetitive DNA elements are major limiting factors for genome finishing. Moreover, we provided a step-by-step workflow for genome finishing, which may guide future bacterial genome finishing

  11. Program on ecosystem change and society: An international research strategy for integrated social-ecological systems

    NARCIS (Netherlands)

    Carpenter, S.R.; Folke, C.; Norström, A.V.; Olsson, O.; Schultz, L.; Agarwal, B.; Balvanera, P.; Campbell, B.; Castilla, J.C.; Cramer, W.; DeFries, R.; Eyzaguirre, P.; Hughes, T.P.; Polasky, S.; Sanusi, Z.A.; Scholes, R.J.; Spierenburg, M.J.

    2012-01-01

    The Program on Ecosystem Change and Society (PECS), a new initiative within the ICSU global change programs, aims to integrate research on the stewardship of social-ecological systems, the services they generate, and the relationships among natural capital, human wellbeing, livelihoods, inequality

  12. Program on ecosystem change and society: An international research strategy for integrated social-ecological systems

    NARCIS (Netherlands)

    Carpenter, S.R.; Folke, C.; Norström, A.V.; Olsson, O.; Schultz, L.; Agarwal, B.; Balvanera, P.; Campbell, B.; Castilla, J.C.; Cramer, W.; DeFries, R.; Eyzaguirre, P.; Hughes, T.P.; Polasky, S.; Sanusi, Z.A.; Scholes, R.J.; Spierenburg, M.J.

    2012-01-01

    The Program on Ecosystem Change and Society (PECS), a new initiative within the ICSU global change programs, aims to integrate research on the stewardship of social-ecological systems, the services they generate, and the relationships among natural capital, human wellbeing, livelihoods, inequality a

  13. Ecological strategies of ectomycorrhizal fungi of Salix repens: root manipulation versus root replacement

    NARCIS (Netherlands)

    Heijden, van der E.W.; Kuyper, T.W.

    2003-01-01

    The ecological significance of a range of ectomycorrhizal fungal species, associated with Salix repens, was investigated under controlled conditions. Different ectomycorrhizas increased plant benefits in various ways. Effects of 12 ectomycorrhizal fungi on short-term (12 weeks) and long-term (20 and

  14. Bacterial beta-lactamase fragmentation complementation strategy can be used as a method for identifying interacting protein pairs.

    Science.gov (United States)

    Park, Jong-Hwa; Back, Jung Ho; Hahm, Soo Hyun; Shim, Hye-Young; Park, Min Ju; Ko, Sung Il; Han, Ye Sun

    2007-10-01

    We investigated the applicability of the TEM-1 beta- lactamase fragment complementation (BFC) system to develop a strategy for the screening of protein-protein interactions in bacteria. A BFC system containing a human Fas-associated death domain (hFADD) and human Fas death domain (hFasDD) was generated. The hFADD-hFasDD interaction was verified by cell survivability in ampicillin-containing medium and the colorimetric change of nitrocefin. It was also confirmed by His pull-down assay using cell lysates obtained in selection steps. A coiled-coil helix coiled-coil domain-containing protein 5 (CHCH5) was identified as an interacting protein of human uracil DNA glycosylase (hUNG) from the bacterial BFC cDNA library strategy. The interaction between hUNG and CHCH5 was further confirmed with immunoprecipitation using a mammalian expression system. CHCH5 enhanced the DNA glycosylase activity of hUNG to remove uracil from DNA duplexes containing a U/G mismatch pair. These results suggest that the bacterial BFC cDNA library strategy can be effectively used to identify interacting protein pairs.

  15. Intestinal concentrations of free and encapsulated dietary medium-chain fatty acids and effects on gastric microbial ecology and bacterial metabolic products in the digestive tract of piglets.

    Science.gov (United States)

    Zentek, Jürgen; Buchheit-Renko, Susanne; Männer, Klaus; Pieper, Robert; Vahjen, Wilfried

    2012-02-01

    The influence of low dietary levels of free and encapsulated medium-chain fatty acids on their concentrations in the digesta, the gastric microbial ecology and bacterial metabolic products in the gastrointestinal tract (GIT) in weaned piglets was studied. Starting after weaning, 36 piglets were fed a diet without (Control) or with medium-chain fatty acids uncoated (MCFA) or coated with vegetable fat and lecithin (MCFAc). After 4 weeks, the animals were killed, and digesta from the stomach and different sections of the GIT were collected. The concentrations of caprylic (p < 0.001) and capric (p = 0.001) acids were higher in the stomachs of piglets fed diets MCFA and MCFAc compared to the Control group. The concentrations dropped rapidly along the GIT, regardless of encapsulation, and tended to be higher in groups MCFA and MCFAc compared to the Control. Compared to the Control group, ingestion of diet MCFAc led to an increase in the number of eubacteria (p = 0.001), enterobacteriaceae (p < 0.001), clostridial clusters I (p = 0.001) and IV (p = 0.019), Lactobacillus johnsonii (p < 0.001) and Lactobacillus amylovorus (p = 0.001) in gastric contents. A similar trend was seen with diet MCFA. Relative concentrations of short-chain fatty acids were characterised by lower propionic acid levels (p = 0.045), numerically (p < 0.1) higher acetic, lower n-butyric and i-valeric acid concentrations in the small intestine. Lactic acid concentrations were not significantly changed in the GIT, but ammonia concentrations increased (p < 0.001) in the distal small intestine in the MCFA and MCFAc groups. In conclusion, medium-chain fatty acids affected microbial ecology parameters in the gastric contents and bacterial metabolites in the small intestine. At low dietary levels, medium-chain fatty acids may be regarded as modulators of the gastric microbiota in weaned piglets.

  16. A bioinformatic strategy for the detection, classification and analysis of bacterial autotransporters.

    Science.gov (United States)

    Celik, Nermin; Webb, Chaille T; Leyton, Denisse L; Holt, Kathryn E; Heinz, Eva; Gorrell, Rebecca; Kwok, Terry; Naderer, Thomas; Strugnell, Richard A; Speed, Terence P; Teasdale, Rohan D; Likić, Vladimir A; Lithgow, Trevor

    2012-01-01

    Autotransporters are secreted proteins that are assembled into the outer membrane of bacterial cells. The passenger domains of autotransporters are crucial for bacterial pathogenesis, with some remaining attached to the bacterial surface while others are released by proteolysis. An enigma remains as to whether autotransporters should be considered a class of secretion system, or simply a class of substrate with peculiar requirements for their secretion. We sought to establish a sensitive search protocol that could identify and characterize diverse autotransporters from bacterial genome sequence data. The new sequence analysis pipeline identified more than 1500 autotransporter sequences from diverse bacteria, including numerous species of Chlamydiales and Fusobacteria as well as all classes of Proteobacteria. Interrogation of the proteins revealed that there are numerous classes of passenger domains beyond the known proteases, adhesins and esterases. In addition the barrel-domain-a characteristic feature of autotransporters-was found to be composed from seven conserved sequence segments that can be arranged in multiple ways in the tertiary structure of the assembled autotransporter. One of these conserved motifs overlays the targeting information required for autotransporters to reach the outer membrane. Another conserved and diagnostic motif maps to the linker region between the passenger domain and barrel-domain, indicating it as an important feature in the assembly of autotransporters.

  17. A bioinformatic strategy for the detection, classification and analysis of bacterial autotransporters.

    Directory of Open Access Journals (Sweden)

    Nermin Celik

    Full Text Available Autotransporters are secreted proteins that are assembled into the outer membrane of bacterial cells. The passenger domains of autotransporters are crucial for bacterial pathogenesis, with some remaining attached to the bacterial surface while others are released by proteolysis. An enigma remains as to whether autotransporters should be considered a class of secretion system, or simply a class of substrate with peculiar requirements for their secretion. We sought to establish a sensitive search protocol that could identify and characterize diverse autotransporters from bacterial genome sequence data. The new sequence analysis pipeline identified more than 1500 autotransporter sequences from diverse bacteria, including numerous species of Chlamydiales and Fusobacteria as well as all classes of Proteobacteria. Interrogation of the proteins revealed that there are numerous classes of passenger domains beyond the known proteases, adhesins and esterases. In addition the barrel-domain-a characteristic feature of autotransporters-was found to be composed from seven conserved sequence segments that can be arranged in multiple ways in the tertiary structure of the assembled autotransporter. One of these conserved motifs overlays the targeting information required for autotransporters to reach the outer membrane. Another conserved and diagnostic motif maps to the linker region between the passenger domain and barrel-domain, indicating it as an important feature in the assembly of autotransporters.

  18. Bacterial Diversity and Community Structure in Two Bornean Nepenthes Species with Differences in Nitrogen Acquisition Strategies.

    Science.gov (United States)

    Sickel, Wiebke; Grafe, T Ulmar; Meuche, Ivonne; Steffan-Dewenter, Ingolf; Keller, Alexander

    2016-05-01

    Carnivorous plants of the genus Nepenthes have been studied for over a century, but surprisingly little is known about associations with microorganisms. The two species Nepenthes rafflesiana and Nepenthes hemsleyana differ in their pitcher-mediated nutrient sources, sequestering nitrogen from arthropod prey and arthropods as well as bat faeces, respectively. We expected bacterial communities living in the pitchers to resemble this diet difference. Samples were taken from different parts of the pitchers (leaf, peristome, inside, outside, digestive fluid) of both species. Bacterial communities were determined using culture-independent high-throughput amplicon sequencing. Bacterial richness and community structure were similar in leaves, peristomes, inside and outside walls of both plant species. Regarding digestive fluids, bacterial richness was higher in N. hemsleyana than in N. rafflesiana. Additionally, digestive fluid communities were highly variable in structure, with strain-specific differences in community composition between replicates. Acidophilic taxa were mostly of low abundance, except the genus Acidocella, which strikingly reached extremely high levels in two N. rafflesiana fluids. In N. hemsleyana fluid, some taxa classified as vertebrate gut symbionts as well as saprophytes were enriched compared to N. rafflesiana, with saprophytes constituting potential competitors for nutrients. The high variation in community structure might be caused by a number of biotic and abiotic factors. Nitrogen-fixing bacteria were present in both study species, which might provide essential nutrients to the plant at times of low prey capture and/or rare encounters with bats.

  19. Preliminary Strategic Environmental Assessment of the Great Western Development Strategy: Safeguarding Ecological Security for a New Western China

    Science.gov (United States)

    Li, Wei; Liu, Yan-Ju; Yang, Zhifeng

    2012-02-01

    The Great Western Development Strategy (GWDS) is a long term national campaign aimed at boosting development of the western area of China and narrowing the economic gap between the western and the eastern parts of China. The Strategic Environmental Assessment (SEA) procedure was employed to assess the environmental challenges brought about by the western development plans. These plans include five key developmental domains (KDDs): water resource exploitation and use, land utilization, energy generation, tourism development, and ecological restoration and conservation. A combination of methods involving matrix assessment, incorporation of expert judgment and trend analysis was employed to analyze and predict the environmental impacts upon eight selected environmental indicators: water resource availability, soil erosion, soil salinization, forest destruction, land desertification, biological diversity, water quality and air quality. Based on the overall results of the assessment, countermeasures for environmental challenges that emerged were raised as key recommendations to ensure ecological security during the implementation of the GWDS. This paper is intended to introduce a consensus-based process for evaluating the complex, long term pressures on the ecological security of large areas, such as western China, that focuses on the use of combined methods applied at the strategic level.

  20. Preliminary strategic environmental assessment of the Great Western Development Strategy: safeguarding ecological security for a new western China.

    Science.gov (United States)

    Li, Wei; Liu, Yan-ju; Yang, Zhifeng

    2012-02-01

    The Great Western Development Strategy (GWDS) is a long term national campaign aimed at boosting development of the western area of China and narrowing the economic gap between the western and the eastern parts of China. The Strategic Environmental Assessment (SEA) procedure was employed to assess the environmental challenges brought about by the western development plans. These plans include five key developmental domains (KDDs): water resource exploitation and use, land utilization, energy generation, tourism development, and ecological restoration and conservation. A combination of methods involving matrix assessment, incorporation of expert judgment and trend analysis was employed to analyze and predict the environmental impacts upon eight selected environmental indicators: water resource availability, soil erosion, soil salinization, forest destruction, land desertification, biological diversity, water quality and air quality. Based on the overall results of the assessment, countermeasures for environmental challenges that emerged were raised as key recommendations to ensure ecological security during the implementation of the GWDS. This paper is intended to introduce a consensus-based process for evaluating the complex, long term pressures on the ecological security of large areas, such as western China, that focuses on the use of combined methods applied at the strategic level.

  1. Sampling of intestinal microbiota and targeted amplification of bacterial 16S rRNA genes for microbial ecologic analysis.

    Science.gov (United States)

    Tong, Maomeng; Jacobs, Jonathan P; McHardy, Ian H; Braun, Jonathan

    2014-11-03

    Dysbiosis of host-associated commensal microbiota is emerging as an important factor in risk and phenotype of immunologic, metabolic, and behavioral diseases. Accurate analysis of microbial composition and functional state in humans or mice requires appropriate collection and pre-processing of biospecimens. Methods to sample luminal and mucosal microbiota from human or mouse intestines and to profile microbial phylogenetic composition using 16S rRNA sequencing are presented here. Data generated using the methods in this unit can be used for downstream quantitative analysis of microbial ecology.

  2. Ecology and thermal inactivation of microbes in and on interplanetary space vehicle components. [heat sensitivity of bacterial spores

    Science.gov (United States)

    Campbell, J. E.; Reyes, A. L.; Wehby, A. J.; Crawford, R. G.; Wimsatt, J. C.; Peeler, J. T.

    1973-01-01

    The mechanism for thermal inactivation of bacterial spores under moist or dry heat was studied. Experimental conditions were established relating to spore loss of heat resistance and loss of optical density as a measure of the rate and extent of germination in spore suspensions. Events occurring during germination were correlated with phase darkening (refractility and non-refractility of spores), stainability characteristics of heat and non-heat treated spores, morphological characteristics, and studies on swelling of spores by an increase in packed cell volume.

  3. Incorporating resilience and cost in ecological restoration strategies at landscape scale

    Directory of Open Access Journals (Sweden)

    Maurício Stefanes

    2016-12-01

    Full Text Available The restoration of deforested or degraded areas can contribute to biodiversity conservation and global resilience given the current and projected impacts of climate change. In recent years, a robust array of ecological restoration frameworks have been generated to address restoration challenges at large scales in different ecosystems around the world. Unfortunately, the costs associated with restoration at such scales greatly challenges the implementation of such frameworks. We used landscape ecology principles with multicriteria optimization of landscape resilience and agricultural productivity as a way to mitigate the trade-offs between production and restoration. We used the Cerrado biome in Mato Grosso do Sul State, Brazil, as a case study to apply our framework. We compared three scenarios: minimal legal compliance (MLC; selection by ecological resilience (SER; and selection by restoration cost (SRC. Our results show that increasing the restoration target from MLC (25% to SER (30% means moving from 968,316 to 1592 million hectares, which can represent a huge opportunity cost for agricultural lands. However, because costs and resilience are not homogeneously distributed throughout landscapes, we can select areas of intermediate ecological resilience and low cost, for the same restoration area target. This process can reduce potential conflicts and make restoration a more viable process. Our results also reveal some areas that can be particularly important for reconciling agriculture and landscape restoration. Those areas combined high and intermediate resilience and an above average profitability. This could mean that increasing restoration in this area could be very expensive, assuming that our proxy roughly represents the restoration implementation cost. However, there is another important message here, that some areas can be productive at the same time that they maintain levels of resilience above the legal compliance, which facilitates

  4. Interactions among Strategies Associated with Bacterial Infection: Pathogenicity, Epidemicity, and Antibiotic Resistance†

    OpenAIRE

    Martínez, José L; Baquero, Fernando

    2002-01-01

    Infections have been the major cause of disease throughout the history of human populations. With the introduction of antibiotics, it was thought that this problem should disappear. However, bacteria have been able to evolve to become antibiotic resistant. Nowadays, a proficient pathogen must be virulent, epidemic, and resistant to antibiotics. Analysis of the interplay among these features of bacterial populations is needed to predict the future of infectious diseases. In this regard, we hav...

  5. Heterologous Expression of Toxins from Bacterial Toxin-Antitoxin Systems in Eukaryotic Cells: Strategies and Applications

    Directory of Open Access Journals (Sweden)

    Chew Chieng Yeo

    2016-02-01

    Full Text Available Toxin-antitoxin (TA systems are found in nearly all prokaryotic genomes and usually consist of a pair of co-transcribed genes, one of which encodes a stable toxin and the other, its cognate labile antitoxin. Certain environmental and physiological cues trigger the degradation of the antitoxin, causing activation of the toxin, leading either to the death or stasis of the host cell. TA systems have a variety of functions in the bacterial cell, including acting as mediators of programmed cell death, the induction of a dormant state known as persistence and the stable maintenance of plasmids and other mobile genetic elements. Some bacterial TA systems are functional when expressed in eukaryotic cells and this has led to several innovative applications, which are the subject of this review. Here, we look at how bacterial TA systems have been utilized for the genetic manipulation of yeasts and other eukaryotes, for the containment of genetically modified organisms, and for the engineering of high expression eukaryotic cell lines. We also examine how TA systems have been adopted as an important tool in developmental biology research for the ablation of specific cells and the potential for utility of TA systems in antiviral and anticancer gene therapies.

  6. Heterologous Expression of Toxins from Bacterial Toxin-Antitoxin Systems in Eukaryotic Cells: Strategies and Applications.

    Science.gov (United States)

    Yeo, Chew Chieng; Abu Bakar, Fauziah; Chan, Wai Ting; Espinosa, Manuel; Harikrishna, Jennifer Ann

    2016-02-19

    Toxin-antitoxin (TA) systems are found in nearly all prokaryotic genomes and usually consist of a pair of co-transcribed genes, one of which encodes a stable toxin and the other, its cognate labile antitoxin. Certain environmental and physiological cues trigger the degradation of the antitoxin, causing activation of the toxin, leading either to the death or stasis of the host cell. TA systems have a variety of functions in the bacterial cell, including acting as mediators of programmed cell death, the induction of a dormant state known as persistence and the stable maintenance of plasmids and other mobile genetic elements. Some bacterial TA systems are functional when expressed in eukaryotic cells and this has led to several innovative applications, which are the subject of this review. Here, we look at how bacterial TA systems have been utilized for the genetic manipulation of yeasts and other eukaryotes, for the containment of genetically modified organisms, and for the engineering of high expression eukaryotic cell lines. We also examine how TA systems have been adopted as an important tool in developmental biology research for the ablation of specific cells and the potential for utility of TA systems in antiviral and anticancer gene therapies.

  7. New Perspectives on the Use of Phytochemicals as an Emergent Strategy to Control Bacterial Infections Including Biofilms.

    Science.gov (United States)

    Borges, Anabela; Abreu, Ana Cristina; Dias, Carla; Saavedra, Maria José; Borges, Fernanda; Simões, Manuel

    2016-01-01

    The majority of current infectious diseases are almost untreatable by conventional antibiotic therapy given the advent of multidrug-resistant bacteria. The degree of severity and the persistence of infections are worsened when microorganisms form biofilms. Therefore, efforts are being applied to develop new drugs not as vulnerable as the current ones to bacterial resistance mechanisms, and also able to target bacteria in biofilms. Natural products, especially those obtained from plants, have proven to be outstanding compounds with unique properties, making them perfect candidates for these much-needed therapeutics. This review presents the current knowledge on the potentialities of plant products as antibiotic adjuvants to restore the therapeutic activity of drugs. Further, the difficulties associated with the use of the existing antibiotics in the treatment of biofilm-related infections are described. To counteract the biofilm resistance problems, innovative strategies are suggested based on literature data. Among the proposed strategies, the use of phytochemicals to inhibit or eradicate biofilms is highlighted. An overview on the use of phytochemicals to interfere with bacterial quorum sensing (QS) signaling pathways and underlying phenotypes is provided. The use of phytochemicals as chelating agents and efflux pump inhibitors is also reviewed.

  8. New Perspectives on the Use of Phytochemicals as an Emergent Strategy to Control Bacterial Infections Including Biofilms

    Directory of Open Access Journals (Sweden)

    Anabela Borges

    2016-07-01

    Full Text Available The majority of current infectious diseases are almost untreatable by conventional antibiotic therapy given the advent of multidrug-resistant bacteria. The degree of severity and the persistence of infections are worsened when microorganisms form biofilms. Therefore, efforts are being applied to develop new drugs not as vulnerable as the current ones to bacterial resistance mechanisms, and also able to target bacteria in biofilms. Natural products, especially those obtained from plants, have proven to be outstanding compounds with unique properties, making them perfect candidates for these much-needed therapeutics. This review presents the current knowledge on the potentialities of plant products as antibiotic adjuvants to restore the therapeutic activity of drugs. Further, the difficulties associated with the use of the existing antibiotics in the treatment of biofilm-related infections are described. To counteract the biofilm resistance problems, innovative strategies are suggested based on literature data. Among the proposed strategies, the use of phytochemicals to inhibit or eradicate biofilms is highlighted. An overview on the use of phytochemicals to interfere with bacterial quorum sensing (QS signaling pathways and underlying phenotypes is provided. The use of phytochemicals as chelating agents and efflux pump inhibitors is also reviewed.

  9. Cooperation and the evolutionary ecology of bacterial virulence: the Bacillus cereus group as a novel study system.

    Science.gov (United States)

    Raymond, Ben; Bonsall, Michael B

    2013-08-01

    How significant is social evolution theory for the maintenance of virulence in natural populations? We assume that secreted, distantly acting virulence factors are highly likely to be cooperative public goods. Using this assumption, we discuss and critically assess the potential importance of social interactions for understanding the evolution, diversity and distribution of virulence in the Bacillus cereus group, a novel study system for microbial social biology. We conclude that dynamic equilibria in Cry toxin production, as well as strong spatial structure and population bottlenecks in hosts are the main ecological factors maintaining the cooperative secretion of virulence factors and argue that collective action has contributed to the evolution of narrow host range. Non-linearities in the benefits associated with public goods, as well as the lack of private secretion systems in the Firmicutes may also explain the prevalence and importance of distantly acting virulence factors in B. cereus and its relatives.

  10. Origin and ecological selection of core and food-specific bacterial communities associated with meat and seafood spoilage

    Science.gov (United States)

    Chaillou, Stéphane; Chaulot-Talmon, Aurélie; Caekebeke, Hélène; Cardinal, Mireille; Christieans, Souad; Denis, Catherine; Hélène Desmonts, Marie; Dousset, Xavier; Feurer, Carole; Hamon, Erwann; Joffraud, Jean-Jacques; La Carbona, Stéphanie; Leroi, Françoise; Leroy, Sabine; Lorre, Sylvie; Macé, Sabrina; Pilet, Marie-France; Prévost, Hervé; Rivollier, Marina; Roux, Dephine; Talon, Régine; Zagorec, Monique; Champomier-Vergès, Marie-Christine

    2015-01-01

    The microbial spoilage of meat and seafood products with short shelf lives is responsible for a significant amount of food waste. Food spoilage is a very heterogeneous process, involving the growth of various, poorly characterized bacterial communities. In this study, we conducted 16S ribosomal RNA gene pyrosequencing on 160 samples of fresh and spoiled foods to comparatively explore the bacterial communities associated with four meat products and four seafood products that are among the most consumed food items in Europe. We show that fresh products are contaminated in part by a microbiota similar to that found on the skin and in the gut of animals. However, this animal-derived microbiota was less prevalent and less abundant than a core microbiota, psychrotrophic in nature, mainly originated from the environment (water reservoirs). We clearly show that this core community found on meat and seafood products is the main reservoir of spoilage bacteria. We also show that storage conditions exert strong selective pressure on the initial microbiota: alpha diversity in fresh samples was 189±58 operational taxonomic units (OTUs) but dropped to 27±12 OTUs in spoiled samples. The OTU assemblage associated with spoilage was shaped by low storage temperatures, packaging and the nutritional value of the food matrix itself. These factors presumably act in tandem without any hierarchical pattern. Most notably, we were also able to identify putative new clades of dominant, previously undescribed bacteria occurring on spoiled seafood, a finding that emphasizes the importance of using culture-independent methods when studying food microbiota. PMID:25333463

  11. Origin and ecological selection of core and food-specific bacterial communities associated with meat and seafood spoilage.

    Science.gov (United States)

    Chaillou, Stéphane; Chaulot-Talmon, Aurélie; Caekebeke, Hélène; Cardinal, Mireille; Christieans, Souad; Denis, Catherine; Desmonts, Marie Hélène; Dousset, Xavier; Feurer, Carole; Hamon, Erwann; Joffraud, Jean-Jacques; La Carbona, Stéphanie; Leroi, Françoise; Leroy, Sabine; Lorre, Sylvie; Macé, Sabrina; Pilet, Marie-France; Prévost, Hervé; Rivollier, Marina; Roux, Dephine; Talon, Régine; Zagorec, Monique; Champomier-Vergès, Marie-Christine

    2015-05-01

    The microbial spoilage of meat and seafood products with short shelf lives is responsible for a significant amount of food waste. Food spoilage is a very heterogeneous process, involving the growth of various, poorly characterized bacterial communities. In this study, we conducted 16S ribosomal RNA gene pyrosequencing on 160 samples of fresh and spoiled foods to comparatively explore the bacterial communities associated with four meat products and four seafood products that are among the most consumed food items in Europe. We show that fresh products are contaminated in part by a microbiota similar to that found on the skin and in the gut of animals. However, this animal-derived microbiota was less prevalent and less abundant than a core microbiota, psychrotrophic in nature, mainly originated from the environment (water reservoirs). We clearly show that this core community found on meat and seafood products is the main reservoir of spoilage bacteria. We also show that storage conditions exert strong selective pressure on the initial microbiota: alpha diversity in fresh samples was 189±58 operational taxonomic units (OTUs) but dropped to 27±12 OTUs in spoiled samples. The OTU assemblage associated with spoilage was shaped by low storage temperatures, packaging and the nutritional value of the food matrix itself. These factors presumably act in tandem without any hierarchical pattern. Most notably, we were also able to identify putative new clades of dominant, previously undescribed bacteria occurring on spoiled seafood, a finding that emphasizes the importance of using culture-independent methods when studying food microbiota.

  12. [Bacterial ecology and resistance to antibiotics in patients with neurogenic overactive bladder treated with intravesical botulinum toxin injections].

    Science.gov (United States)

    Levy, J; Le Breton, F; Jousse, M; Haddad, R; Verollet, D; Guinet-Lacoste, A; Amarenco, G

    2014-10-01

    For the last ten years, botulinum neurotoxin type A has become the gold standard for the treatment of neurogenic overactive detrusor. Bacterial colonization is common for these patients using clean intermittent self-catheterization, and toxin injections are at risk of urinary tract infections. The aim of our study was to determine the prevalence of different germs and their resistance to antibiotics in patients with neurogenic bladder, treated with intravesical botulinum toxin injections. This epidemiologic study took place from September to October 2012 in a urodynamic and neurourology unit in a teaching hospital in Paris, France. Eighty patients with a valid urine culture according to our protocol, were included. Fourty-four culture were positive with 45 bacteria. We found an Escherichia coli in 42.5%, a Klebsiella pneumoniae in 7.5%, a Citrobacter freundii and an enterococcus in 2.5%, and a Staphylococcus aureus in 1.25%. Penicillin resistance were found in 51.11%, 3rd generation cephalosporins in 8.89%, quinolones in 28.89% and sulfamids in 24.44%. None were resistant to fosfomycin. E. coli was the most frequent bacterium. No resistance to fosfomycin was found. Copyright © 2014 Elsevier Masson SAS. All rights reserved.

  13. Rangeland degradation assessment: a new strategy based on the ecological knowledge of indigenous pastoralists

    Science.gov (United States)

    Behmanesh, Bahareh; Barani, Hossein; Abedi Sarvestani, Ahmad; Shahraki, Mohammad Reza; Sharafatmandrad, Mohsen

    2016-04-01

    In a changing world, the prevalence of land degradation is becoming a serious problem, especially in countries with arid and semi-arid rangelands. There are many techniques to assess rangeland degradation that rely on scientific knowledge but ignore indigenous people. Indigenous people have accumulated precious knowledge about land management through generations of experience. Therefore, a study was conducted to find out how indigenous people assess rangeland degradation and how their ecological knowledge can be used for rangeland degradation assessment. Interviews were conducted with the pastoralists of two sites (Dasht and Mirza Baylu), where part of both areas is located in Golestan National Park (north-eastern Iran). A structured questionnaire was designed based on 17 indicators taken from literature and also primary discussions with pastoralists in order to evaluate land degradation. A qualitative Likert five-point scale was used for scoring rangeland degradation indicators. The results revealed that pastoralists pay more attention to edaphic indicators than to vegetative and other indicators. There were significant differences between the inside and outside of the park in terms of rangeland degradation indicators for both sites. The results show that the rangelands outside of the park in both sites were degraded compared to those inside of the park, especially in the areas close to villages. It can be concluded that pastoralists have a wealth of knowledge about the vegetation and grazing animal habits that can be used in rangeland degradation assessment. It is therefore necessary to document their ecological indigenous knowledge and involve them in the process of rangeland-degradation assessment.

  14. Responses to climate and economic risks and opportunities across national and ecological boundaries: changing household strategies on the Mongolian plateau.

    Science.gov (United States)

    Brown, Daniel G; Agrawal, Arun; Sass, Daniel A; Wang, Jun; Hua, Jin; Xie, Yichun

    2013-01-01

    Climate changes on the Mongolian Plateau are creating new challenges for the households and communities of the region. Much of the existing research on household choices in response to climate variability and change focuses on environmental risks and stresses. In contrast, our analysis highlights the importance of taking into account environmental and economic opportunities in explaining household adaptation choices. We surveyed over 750 households arrayed along an ecological gradient and matched across the national border in Mongolia and the Inner Mongolia Autonomous Region, China, asking what changes in livelihoods strategies households made over the last ten years, and analyzed these choices in two broad categories of options: diversification and livestock management. We combined these data with remotely sensed information about vegetation growth and self-reported exposure to price fluctuations. Our statistical results showed that households experiencing lower ecological and economic variability, higher average levels of vegetation growth, and with greater levels of material wealth, were often those that undertook more actions to improve their conditions in the face of variability. The findings have implications both for how interventions aimed at supporting ongoing choices might be targeted and for theory construction related to social adaptation.

  15. Biochemical aspects of bacterial strategies for handling the incomplete translation processes

    Directory of Open Access Journals (Sweden)

    Yoshihiro eShimizu

    2014-04-01

    Full Text Available During protein synthesis in cells, translating ribosomes may encounter abnormal situations that lead to retention of immature peptidyl-tRNA on the ribosome due to failure of suitable termination processes. Bacterial cells handle such situations by employing three systems that rescue the stalled translation machinery. The transfer messenger RNA/small protein B (tmRNA/SmpB system, also called the trans-translation system, rescues stalled ribosomes by initiating template switching from the incomplete mRNA to the short open reading frame of tmRNA, leading to the production of a protein containing a C-terminal tag that renders it susceptible to proteolysis. The ArfA/RF2 and ArfB systems rescue stalled ribosomes directly by hydrolyzing the immature peptidyl-tRNA remaining on the ribosome. Here, the biochemical aspects of these systems, as clarified by recent studies, are reviewed.

  16. A structure-based strategy to identify new molecular scaffolds targeting the bacterial ribosomal A-site.

    Science.gov (United States)

    Foloppe, Nicolas; Chen, I-Jen; Davis, Ben; Hold, Adam; Morley, Dave; Howes, Rob

    2004-03-01

    The need for novel antibiotics is widely recognized. A well validated target of antibiotics is the bacterial ribosome. Recent X-ray structures of the ribosome bound to antibiotics have shed new light on the binding sites of these antibiotics, providing fresh impetus for structure-based strategies aiming at identifying new ribosomal ligands. In that respect, the ribosomal decoding region of the aminoacyl-tRNA acceptor site (A-site) is of particular interest because oligonucleotide model systems of this site are available for crystallography, NMR and compound binding assays. This work presents how these different resources can be combined in a hierarchical screening strategy which has led to the identification of new A-site ligands. The approach exploits an X-ray structure of the A-site against which large and diverse libraries of compounds were computationally docked. The complementarity of the compounds to the A-site was assessed using a scoring function specifically calibrated for RNA targets. Starting from approximately 1 million compounds, the computational selection of candidate ligands allowed us to focus the experimental work on 129 compounds, 34 of which showed affinity for the A-site in a FRET-based binding assay. NMR experiments confirmed binding to the A-site for some compounds. For the most potent compound in the FRET assay, a tentative binding mode is suggested, which is compatible with the NMR data and the limited SAR in this series. Overall, the results validate the screening strategy.

  17. Ecological adaptation strategies of annual plants in artificial vegetation-stabilized sand dune in Shapotou Region

    Institute of Scientific and Technical Information of China (English)

    ZHANG Jingguang; LI Xinrong; WANG Xinping; WANG Gang

    2004-01-01

    Taking annual plant Eragrostis poaeides in the artificial vegetation-stabilized sand dune in the Shapotou Experimental Research Station as example, study has been done on the adaptation strategies of annual plants to random environment through fixed quadrat observations of population changes and fixed plant determinations of individual growth, seed germination,population dynamics, spatial distribution pattern of population, competition and regulation. During the growing season, the survival rate of annual plants depends on the precipitation intensity and precipitation duration which activate the germination of seeds. The optimal germination strategy of annual plants in this habitat during the growing season appears as continuous germination under suitable conditions. Such continuous germination is an adaptive characteristic of annual plants to random environment. In addition, the variation processes of population size and regulation mechanism of E. poaeoides are studied. Statistical results of natural population in four consecutive years show that water condition in the habitat is the leading factor affecting the population dynamics of E. poaeoides. During the establishment period E. poaeoides had a higher death rate, but in the middle to later period they could survive stably. Due to the limitation of soil moisture, the competition among individuals for water inevitably led to self-thinning phenomena. Under very arid condition, the survival curve of annual herbs entirely appears as Deevey Ⅲ type (C type), but under relatively adequate precipitation condition, the survival curve appears as intermediate type. The strategy of life history obviously appears as r-strategy. Plant species of r-strategy often occurs in the early succession stage of the communities. In the relatively adequate and evenly-distributed rainfall years, E. poaeoides population exhibited a density-dependent, i. e., survival rate increased with decrease in population density. The main pattern to

  18. Environmental variability drives rapid and dramatic changes in nutrient limitation of tropical macroalgae with different ecological strategies

    Science.gov (United States)

    Clausing, Rachel J.; Fong, Peggy

    2016-06-01

    Nitrogen (N) or phosphorus (P) limits primary productivity in nearly every ecosystem worldwide, yet how limitation changes over time, particularly in connection to variation in environmental drivers, remains understudied. We evaluated temporal and species-specific variability in the relative importance of N and P limitation among tropical macroalgae in two-factor experiments conducted twice after rains and twice after dry conditions to explore potential linkages to environmental drivers. We studied three common macroalgal species with varying ecological strategies: a fast-growing opportunist, Dictyota bartayresiana; and two calcifying species likely to be slower growing, Galaxaura fasciculata and Padina boryana. On the scale of days to weeks, nutrient responses ranged among and within species from no limitation to increases in growth by 20 and 40 % over controls in 3 d with N and P addition, respectively. After light rain or dry conditions, Dictyota grew rapidly (up to ~60 % in 3 d) with little indication of nutrient limitation, while Padina and Galaxaura shifted between N, P, or no limitation. All species grew slowly or lost mass after a large storm, presumably due to unfavorable conditions on the reef prior to the experiment that limited nutrient uptake. Padina and Galaxaura both became nutrient limited 3 d post-storm, while Dictyota did not. These results suggest that differing capabilities for nutrient uptake and storage dictate the influence of nutrient history and thus drive nutrient responses and, in doing so, may allow species with differing ecological strategies to coexist in a fluctuating environment. Moreover, the great variability in species' responses indicates that patterns of nutrient limitation are more complex than previously recognized, and generalizations about N versus P limitation of a given system may not convey the inherent complexity in governing conditions and processes.

  19. Improving diagnostic strategies for predicting serious bacterial infections in children with fever

    NARCIS (Netherlands)

    R.G. Nijman (Ruud)

    2014-01-01

    textabstractThis thesis aimed to improve diagnostic strategies for predicting SBI in febrile children in emergency care settings. Generally, clinical signs and symptoms were of limited use in detecting SBI, even when using modelling techniques that best reflected their predictive ability. C-reactive

  20. Genomic Analysis of Clavibacter michiganensis Reveals Insight Into Virulence Strategies and Genetic Diversity of a Gram-Positive Bacterial Pathogen.

    Science.gov (United States)

    Thapa, Shree P; Pattathil, Sivakumar; Hahn, Michael G; Jacques, Marie-Agnès; Gilbertson, Robert L; Coaker, Gitta

    2017-10-01

    Clavibacter michiganensis subsp. michiganensis is a gram-positive bacterial pathogen that proliferates in the xylem vessels of tomato, causing bacterial canker disease. In this study, we sequenced and assembled genomes of 11 C. michiganensis subsp. michiganensis strains isolated from infected tomato fields in California as well as five Clavibacter strains that colonize tomato endophytically but are not pathogenic in this host. The analysis of the C. michiganensis subsp. michiganensis genomes supported the monophyletic nature of this pathogen but revealed genetic diversity among strains, consistent with multiple introduction events. Two tomato endophytes that clustered phylogenetically with C. michiganensis strains capable of infecting wheat and pepper and were also able to cause disease in these plants. Plasmid profiles of the California strains were variable and supported the essential role of the pCM1-like plasmid and the CelA cellulase in virulence, whereas the absence of the pCM2-like plasmid in some pathogenic C. michiganensis subsp. michiganensis strains revealed it is not essential. A large number of secreted C. michiganensis subsp. michiganensis proteins were carbohydrate-active enzymes (CAZymes). Glycome profiling revealed that C. michiganensis subsp. michiganensis but not endophytic Clavibacter strains is able to extensively alter tomato cell-wall composition. Two secreted CAZymes found in all C. michiganensis subsp. michiganensis strains, CelA and PelA1, enhanced pathogenicity on tomato. Collectively, these results provide a deeper understanding of C. michiganensis subsp. michiganensis diversity and virulence strategies.

  1. The role of grazer predation strategies in the dynamics of consumer-resource based ecological models

    Science.gov (United States)

    Cropp, Roger; Moroz, Irene; Norbury, John

    2017-07-01

    We analyse a simple plankton system to provide a heuristic for more complex models such as Dynamic Green Ocean Models (DGOMs). Zooplankton foraging is either by generalist grazers that consume whatever they bump into or specialist grazers that actively seek particular prey. The zooplankton may further be classified as either facultative grazers that can survive on any of their prey or obligate grazers that depend on the presence of specific prey. A key result is that different prey dependencies can result in dramatically different impacts of grazing strategies on system outcomes. The grazing strategy can determine whether a system with obligate grazers will be stable, have regular, predictable cycles or be chaotic. Conversely, whether facultative zooplankton functioned as specialist or generalist grazers makes no qualitative difference to the dynamics of the system. These results demonstrate that the effect of different grazing strategies can be critically dependent on the grazer's dependency on specific prey. Great care must be taken when choosing functional forms for population interactions in DGOMs, particularly in scenarios such as climate change where parameters such as mortality and growth coefficients may change. A robust theoretical framework supporting model development and analysis is key to understanding how such choices can affect model properties and hence predictions.

  2. Biocultural construction of obesogenic ecologies of childhood: parent-feeding versus child-eating strategies.

    Science.gov (United States)

    Brewis, Alexandra; Gartin, Meredith

    2006-01-01

    Human biologists recognize the centrality of parental feeding beliefs and related practices in structuring children's under-nutrition risk in food-insecure settings. By contrast, how they might similarly structure children's nutrition-related health risks in calorically rich ecologies has barely been considered. Using the case of 3- to 6-year-old children in a rural Southeastern U.S. community with very high obesity rates, we use cognitive methods such as consensus analysis to determine how parental cultural models of child eating and feeding are linked to high calorie, obesogenic child diets. We find that parental models are very consistent with biomedical understandings (reduce fat, reduce sugar, portion control, etc.). Regardless, children's diets are extremely high in calories overall as well as in high sugar and fat food items. We suggest three likely and mutually reinforcing contributing factors to persistent and increasing early childhood overweight and obesity: parents' ambivalence about modeling healthy eating, children's active resistance, and the balance of parents' social against nutritive goals at meal times. The active role of children as social architects of their own biology has been little explored in human biological studies, and should provide novel and important understandings of the biocultural construction of childhood over-nutrition.

  3. An empirical strategy for characterizing bacterial proteomes across species in the absence of genomic sequences

    Energy Technology Data Exchange (ETDEWEB)

    Turse, Joshua E.; Marshall, Matthew J.; Fredrickson, Jim K.; Lipton, Mary S.; Callister, Stephen J.

    2010-11-12

    Current methods in proteomics are dependent on the availability of sequenced genomes to identify proteins. However, genomic sequences are not always available for bacteria or microbial communities, even with high throughput sequencing technology becoming more readily available. Nevertheless, the homology that exists between related bacteria makes possible the extraction of meaningful biological information from an organism’s, or community’s proteome using the genomic sequence of a near neighbor. Here, a cross-organism search strategy was used to look at the amount of proteomics information obtainable with relative genetic distance from a near neighbor organism and to identify proteins in the proteome of minimally characterized environmental isolates. We conclude that closely related organisms with sequenced genomes, can be used to characterize proteomes of organisms with unsequenced genomes. In general, a cross-organism search strategy demonstrates the first step to use of sequences genomes to evaluate the proteomes of environmental bacteria and microbial communities that have no sequenced genome

  4. GFinisher: a new strategy to refine and finish bacterial genome assemblies

    Science.gov (United States)

    Guizelini, Dieval; Raittz, Roberto T.; Cruz, Leonardo M.; Souza, Emanuel M.; Steffens, Maria B. R.; Pedrosa, Fabio O.

    2016-10-01

    Despite the development in DNA sequencing technology, improving the number and the length of reads, the process of reconstruction of complete genome sequences, the so called genome assembly, is still complex. Only 13% of the prokaryotic genome sequencing projects have been completed. Draft genome sequences deposited in public databases are fragmented in contigs and may lack the full gene complement. The aim of the present work is to identify assembly errors and improve the assembly process of bacterial genomes. The biological patterns observed in genomic sequences and the application of a priori information can allow the identification of misassembled regions, and the reorganization and improvement of the overall de novo genome assembly. GFinisher starts generating a Fuzzy GC skew graphs for each contig in an assembly and follows breaking down the contigs in critical points in order to reassemble and close them using jFGap. This has been successfully applied to dataset from 96 genome assemblies, decreasing the number of contigs by up to 86%. GFinisher can easily optimize assemblies of prokaryotic draft genomes and can be used to improve the assembly programs based on nucleotide sequence patterns in the genome. The software and source code are available at http://gfinisher.sourceforge.net/.

  5. Ecological strategies of Al-accumulating and non-accumulating functional groups from the cerrado sensu stricto

    Directory of Open Access Journals (Sweden)

    Marcelo C. de Souza

    2015-06-01

    Full Text Available The cerrado's flora comprises aluminum-(Al accumulating and non-accumulating plants, which coexist on acidic and Al-rich soils with low fertility. Despite their existence, the ecological importance or biological strategies of these functional groups have been little explored. We evaluated the leaf flushing patterns of both groups throughout a year; leaf concentrations of N, P, K, Ca, Mg, S, Al, total flavonoids and polyphenols; as well as the specific leaf area (SLA on young and mature leaves within and between the groups. In Al-accumulating plants, leaf flushed throughout the year, mainly in May and September; for non-accumulating plants, leaf flushing peaked at the dry-wet seasons transition. However, these behaviors could not be associated with strategies for building up concentrations of defense compounds in leaves of any functional groups. Al-accumulating plants showed low leaf nutrient concentrations, while non-accumulating plants accumulated more macronutrients and produced leaves with high SLA since the juvenile leaf phase. This demonstrates that the increase in SLA is slower in Al-accumulating plants that are likely to achieve SLA values comparable to the rest of the plant community only in the wet season, when sunlight capture is important for the growth of new branches.

  6. Ecological Inference

    Science.gov (United States)

    King, Gary; Rosen, Ori; Tanner, Martin A.

    2004-09-01

    This collection of essays brings together a diverse group of scholars to survey the latest strategies for solving ecological inference problems in various fields. The last half-decade has witnessed an explosion of research in ecological inference--the process of trying to infer individual behavior from aggregate data. Although uncertainties and information lost in aggregation make ecological inference one of the most problematic types of research to rely on, these inferences are required in many academic fields, as well as by legislatures and the Courts in redistricting, by business in marketing research, and by governments in policy analysis.

  7. Ecological strategies in california chaparral: Interacting effects of soils, climate, and fire on specific leaf area

    Science.gov (United States)

    Anacker, Brian; Rajakaruna, Nishanta; Ackerly, David; Harrison, Susan; Keeley, Jon E.; Vasey, Michael

    2011-01-01

    Background: High values of specific leaf area (SLA) are generally associated with high maximal growth rates in resource-rich conditions, such as mesic climates and fertile soils. However, fire may complicate this relationship since its frequency varies with both climate and soil fertility, and fire frequency selects for regeneration strategies (resprouting versus seeding) that are not independent of resource-acquisition strategies. Shared ancestry is also expected to affect the distribution of resource-use and regeneration traits.Aims: We examined climate, soil, and fire as drivers of community-level variation in a key functional trait, SLA, in chaparral in California.Methods: We quantified the phylogenetic, functional, and environmental non-independence of key traits for 87 species in 115 plots.Results: Among species, SLA was higher in resprouters than seeders, although not after phylogeny correction. Among communities, mean SLA was lower in harsh interior climates, but in these climates it was higher on more fertile soils and on more recently burned sites; in mesic coastal climates, mean SLA was uniformly high despite variation in soil fertility and fire history.Conclusions: We conclude that because important correlations exist among both species traits and environmental filters, interpreting the functional and phylogenetic structure of communities may require an understanding of complex interactive effects.

  8. The desert moss Pterygoneurum lamellatum (Pottiaceae) exhibits an inducible ecological strategy of desiccation tolerance: effects of rate of drying on shoot damage and regeneration

    Science.gov (United States)

    Premise of the study: Bryophytes are regarded as a clade incorporating constitutive desiccation tolerance, especially terrestrial species. Here we test the hypothesis that the opposing ecological strategy of desiccation tolerance, inducibility, is present in a desert moss, and addressed by varying r...

  9. A genetic strategy to identify targets for the development of drugs that prevent bacterial persistence.

    Science.gov (United States)

    Kim, Jee-Hyun; O'Brien, Kathryn M; Sharma, Ritu; Boshoff, Helena I M; Rehren, German; Chakraborty, Sumit; Wallach, Joshua B; Monteleone, Mercedes; Wilson, Daniel J; Aldrich, Courtney C; Barry, Clifton E; Rhee, Kyu Y; Ehrt, Sabine; Schnappinger, Dirk

    2013-11-19

    Antibacterial drug development suffers from a paucity of targets whose inhibition kills replicating and nonreplicating bacteria. The latter include phenotypically dormant cells, known as persisters, which are tolerant to many antibiotics and often contribute to failure in the treatment of chronic infections. This is nowhere more apparent than in tuberculosis caused by Mycobacterium tuberculosis, a pathogen that tolerates many antibiotics once it ceases to replicate. We developed a strategy to identify proteins that Mycobacterium tuberculosis requires to both grow and persist and whose inhibition has the potential to prevent drug tolerance and persister formation. This strategy is based on a tunable dual-control genetic switch that provides a regulatory range spanning three orders of magnitude, quickly depletes proteins in both replicating and nonreplicating mycobacteria, and exhibits increased robustness to phenotypic reversion. Using this switch, we demonstrated that depletion of the nicotinamide adenine dinucleotide synthetase (NadE) rapidly killed Mycobacterium tuberculosis under conditions of standard growth and nonreplicative persistence induced by oxygen and nutrient limitation as well as during the acute and chronic phases of infection in mice. These findings establish the dual-control switch as a robust tool with which to probe the essentiality of Mycobacterium tuberculosis proteins under different conditions, including those that induce antibiotic tolerance, and NadE as a target with the potential to shorten current tuberculosis chemotherapies.

  10. The desert moss Pterygoneurum lamellatum (Pottiaceae) exhibits an inducible ecological strategy of desiccation tolerance: effects of rate of drying on shoot damage and regeneration.

    Science.gov (United States)

    Stark, Lloyd R; Greenwood, Joshua L; Brinda, John C; Oliver, Melvin J

    2013-08-01

    Bryophytes include clades that incorporate constitutive desiccation tolerance, especially terrestrial species. Here we test the hypothesis that the opposing ecological strategy of desiccation tolerance, inducibility, is present in a desert moss, and address this hypothesis by varying rates of drying in a laboratory study. Desiccation tolerance is arguably the most important evolutionary innovation relevant to the colonization of land by plants; increased understanding of the ecological drivers of this trait will eventually illuminate the responsible mechanisms and ultimately open doors to the potential for the application of this trait in cultivated plants. Plants were cloned, grown in continuous culture (dehardened) for several months, and subjected to rates of drying (drying times) ranging from 30 min to 53 h, rehydrated and tested for recovery using chlorophyll fluorescence, leaf damage, and regeneration of protonema and shoots. Rate of drying significantly affected all recovery responses, with very rapid drying rates severely damaging the entire shoot except the shoot apex and resulting in slower growth rates, fewer regenerative shoots produced, and a compromised photosynthetic system as inferred from fluorescence parameters. For the first time, a desert moss is shown to exhibit an ecological strategy of desiccation tolerance that is inducible, challenging the assumption that arid-land bryophytes rely exclusively on constitutive protection. Results indicate that previous considerations defining a slow-dry event in bryophytes need reevaluation, and that the ecological strategy of inducible desiccation tolerance is probably more common than currently understood among terrestrial bryophytes.

  11. Using ecological forecasting of future vegetation transition and fire frequency change in the Sierra Nevada to assess fire management strategies

    Science.gov (United States)

    Thorne, J. H.; Schwartz, M. W.; Holguin, A. J.; Moritz, M.; Batllori, E.; Folger, K.; Nydick, K.

    2013-12-01

    Ecological systems may respond in complex manners as climate change progresses. Among the responses, site-level climate conditions may cause a shift in vegetation due to the physiological tolerances of plant species, and the fire return interval may change. Natural resource managers challenged with maintaining ecosystem health need a way to forecast how these processes may affect every location, in order to determine appropriate management actions and prioritize locations for interventions. We integrated climate change-driven vegetation type transitions with projected change in fire frequency for 45,203 km2 of the southern Sierra Nevada, California, containing over 10 land management agencies as well as private lands. This Magnitude of Change (MOC) approach involves classing vegetation types in current time according to their climate envelopes, and identifying which sites will in the future have climates beyond what that vegetation currently occurs in. Independently, fire models are used to determine the change in fire frequency for each site. We examined 82 vegetation types with >50 grid cell occurrences. We found iconic resources such as the giant sequoia, lower slope oak woodlands, and high elevation conifer forests are projected as highly vulnerable by models that project a warmer drier future, but not as much by models that project a warmer future that is not drier than current conditions. Further, there were strongly divergent vulnerabilities of these forest types across land ownership (National Parks versus US Forest Service lands), and by GCM. For example, of 50 giant sequoia (Sequoiadendron giganteum) groves and complexes, all but 3 (on Sierra National Forest) were in the 2 highest levels of risk of climate and fire under the GFDL A2 projection, while 15 groves with low-to-moderate risk were found on both the National Parks and National Forests 18 in the 2 under PCM A2. Landscape projections of potential MOC suggest that the region is likely to experience

  12. Transboundary ecological networks as an adaptation strategy to climate change: The example of the Dutch - German border

    NARCIS (Netherlands)

    Rüter, S.; Vos, C.C.; Eupen, van M.; Rühmkorf, H.

    2014-01-01

    Establishing ecological networks across national boundaries is essential for species to adapt to shifts in future suitable climate zones. This paper presents a method to assess whether the existing ecological network in the Dutch – German border region is “climate proof”. Using distribution data and

  13. Developing sporophytes transition from an inducible to a constitutive ecological strategy of desiccation tolerance in the moss Aloina ambigua: effects of desiccation on fitness.

    Science.gov (United States)

    Stark, Lloyd R; Brinda, John C

    2015-03-01

    Two ecological strategies of desiccation tolerance exist in plants, constitutive and inducible. Because of difficulties in culturing sporophytes, very little is known about desiccation tolerance in this generation and how desiccation affects sexual fitness. Cultured sporophytes and vegetative shoots from a single genotype of the moss Aloina ambigua raised in the laboratory were tested for their strategy of desiccation tolerance by desiccating the shoot-sporophyte complex and vegetative shoots at different intensities, and comparing outcomes with those of undried shoot-sporophyte complexes and vegetative shoots. By using a dehardened clonal line, the effects of field, age and genetic variance among plants were removed. The gametophyte and embryonic sporophyte were found to employ a predominantly inducible strategy of desiccation tolerance, while the post-embryonic sporophyte was found to employ a moderately constitutive strategy of desiccation tolerance. Further, desiccation reduced sporophyte fitness, as measured by sporophyte mass, seta length and capsule size. However, the effects of desiccation on sporophyte fitness were reduced if the stress occurred during embryonic development as opposed to postembryonic desiccation. The effects of desiccation on dehardened sporophytes of a bryophyte are shown for the first time. The transition from one desiccation tolerance strategy to the other in a single structure or generation is shown for only the second time in plants and for the first time in bryophytes. Finding degrees of inducible strategies of desiccation tolerance in different life phases prompts the formulation of a continuum hypothesis of ecological desiccation tolerance in mosses, where desiccation tolerance is not an either/or phenomenon, but varies in degree along a gradient of ecological inducibility. © The Author 2015. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email

  14. Natural vegetal regeneration as a basis for the development of strategies for ecological restoration in three Protected Biotopes in the Maya Biosphere Reserve, Guatemala

    Directory of Open Access Journals (Sweden)

    Manolo José García Vettorazzi

    2015-07-01

    Full Text Available The natural ecosystems of the Maya Biosphere Reserve contain high levels of biodiversity providing environmental goods and services to society, so their conservation is strategic for local and regional development. However, there is a increasing tendency to disturb these ecosystems as a result of human activities, so is necessary to develop strategies that minimize the negative impacts and allow the recovery of degraded natural ecosystems. Existing information on the functioning of essential ecological processes of local ecosystems is sparse and is scattered, limiting the development of strategies. It was proposed to study the dynamics of natural regeneration of vegetation as a basis for defining strategies of ecological restoration in three Protected Biotopes in Peten and adjacent areas, by characterizing the structure and composition of vegetation in six categories of natural regeneration and forest without recent disturbance. Two modified Whitaker 0.1 ha plots were plotted by category and seed bank samples were collected. With this information a conceptual framework of natural regeneration was developed for application in restoration strategies at local and landscape scales.

  15. 公共图书馆生态管理策略生成模式研究%On Strategy- making Mode for Ecological Management in Public Libraries

    Institute of Scientific and Technical Information of China (English)

    刘朝晖

    2011-01-01

    基于对公共图书馆生态管理内涵与维度的分析,以及对其管理策略功能和类型的把握,分析影响其策略生成的宏观环境和微观因素,分常规和危机两种模式探讨公共图书馆生态管理策略生成规律,以提升其策略层次和水平,改善其管理效率和效果。%Based on the analysis about connotation and dimensions ecological management in public libraries, as well as the function and types of their management strategies, this paper explores both of the macro - environment and micro - factor working on strategy - making for ecological management in public libraries, and probes into the law of which from two modes of general and crisis, so as to promote the level of their management strategies, and better the management efficency and effect.

  16. An Integrated Optimal Energy Management/Gear-Shifting Strategy for an Electric Continuously Variable Transmission Hybrid Powertrain Using Bacterial Foraging Algorithm

    Directory of Open Access Journals (Sweden)

    Syuan-Yi Chen

    2016-01-01

    Full Text Available This study developed an integrated energy management/gear-shifting strategy by using a bacterial foraging algorithm (BFA in an engine/motor hybrid powertrain with electric continuously variable transmission. A control-oriented vehicle model was constructed on the Matlab/Simulink platform for further integration with developed control strategies. A baseline control strategy with four modes was developed for comparison with the proposed BFA. The BFA was used with five bacterial populations to search for the optimal gear ratio and power-split ratio for minimizing the cost: the equivalent fuel consumption. Three main procedures were followed: chemotaxis, reproduction, and elimination-dispersal. After the vehicle model was integrated with the vehicle control unit with the BFA, two driving patterns, the New European Driving Cycle and the Federal Test Procedure, were used to evaluate the energy consumption improvement and equivalent fuel consumption compared with the baseline. The results show that [18.35%,21.77%] and [8.76%,13.81%] were improved for the optimal energy management and integrated optimization at the first and second driving cycles, respectively. Real-time platform designs and vehicle integration for a dynamometer test will be investigated in the future.

  17. Quorum signaling mycotoxins: A new risk strategy for bacterial biocontrol of Fusarium verticillioides and other endophytic fungal species?

    Science.gov (United States)

    Bacterial endophytes are used as biocontrol organisms for plant pathogens such as the maize endophyte Fusarium verticillioides and its production of fumonisin mycotoxins. However, such applications are not always predictable and efficient. All bacteria communicate via cell-dependent signals, which...

  18. [Evaluation of ecosystem service value and strategies for ecological design in land consolidation: a case of land consolidation project in Da'an City, Jilin Province, China].

    Science.gov (United States)

    Wang, Jun; Yan, Shen-Chun; Yu, Li; Zhang, Ya-Nan

    2014-04-01

    Land consolidation, as one of the major driving forces for the changes of land use/cover, has significant impacts on landscape patterns, ecological functions, and ecosystem services. In this paper, a land consolidation project conducted in Da'an City, Jinlin Province, China, was selected to evaluate the ecosystem service values before and after land consolidation at three spatial scales, i. e., village, town, and county. The results indicated that the land consolidation with the goal to increase the area of cultivated land might cause the decrease of the saline and alkaline land, grassland, and wetland. In addition, land consolidation resulted in the reduction of the total ecosystem service values at varying degree at the three scales. Compared to the pre-consolidation status, the total post-consolidation ecosystem service values at the village, town and county scales were 7.96, 843.01 and 1205.86 million yuan, and reduced by 10.5%, 14.2% and 33.1%, respectively. Based on the evaluation of ecosystem service value, strategies of landscape ecological design were discussed to improve the ecological functions and to provide the guidance for the sustainable development of land consolidation.

  19. 生态小区的建筑规划设计策略研究%Buildings Planning and Design Strategy of Ecological residential

    Institute of Scientific and Technical Information of China (English)

    晏晨晨

    2015-01-01

    With the rapid development of China's economy, green, healthy lifestyle is increasingly being recognized by the people, therefore, ecological residential construction planning has become an important issue of our times. Through the current status of China's ecological residential building research and analysis, proposed residential development in the ecological problems and solve these problems, put forward the corresponding design principles and strategies to promote the development of eco-residential buildings.%随着我国社会经济的快速发展,绿色、健康的生活方式越来越被人们所认可,因此,生态小区的建筑规划也成为当今时代的重要课题。通过对目前我国生态小区建筑现状的研究和分析,提出了生态小区发展中存在的问题,并针对这些问题,提出了相应的设计原则和设计策略,以促进我国生态小区建筑的发展。

  20. [Ecology and ecologies].

    Science.gov (United States)

    Valera, Luca

    2011-01-01

    Ecology (from the Greek words οιχοσ, "house" and λογια "study of") is the science of the "house", since it studies the environments where we live. There are three main ways of thinking about Ecology: Ecology as the study of interactions (between humans and the environment, between humans and living beings, between all living beings, etc.), Ecology as the statistical study of interactions, Ecology as a faith, or rather as a science that requires a metaphysical view. The history of Ecology shows us how this view was released by the label of "folk sense" to gain the epistemological status of science, a science that strives to be interdisciplinary. So, the aim of Ecology is to study, through a scientific methodology, the whole natural world, answering to very different questions, that arise from several fields (Economics, Biology, Sociology, Philosophy, etc.). The plurality of issues that Ecology has to face led, during the Twentieth-century, to branch off in several different "ecologies". As a result, each one of these new approaches chose as its own field a more limited and specific portion of reality.

  1. Microbial Ecology of the Hive and Pollination Landscape: Bacterial Associates from Floral Nectar, the Alimentary Tract and Stored Food of Honey Bees (Apis mellifera)

    Science.gov (United States)

    Mott, Brendon M.; Maes, Patrick; Snyder, Lucy; Schwan, Melissa R.; Walton, Alexander; Jones, Beryl M.; Corby-Harris, Vanessa

    2013-01-01

    Nearly all eukaryotes are host to beneficial or benign bacteria in their gut lumen, either vertically inherited, or acquired from the environment. While bacteria core to the honey bee gut are becoming evident, the influence of the hive and pollination environment on honey bee microbial health is largely unexplored. Here we compare bacteria from floral nectar in the immediate pollination environment, different segments of the honey bee (Apis mellifera) alimentary tract, and food stored in the hive (honey and packed pollen or “beebread”). We used cultivation and sequencing to explore bacterial communities in all sample types, coupled with culture-independent analysis of beebread. We compare our results from the alimentary tract with both culture-dependent and culture-independent analyses from previous studies. Culturing the foregut (crop), midgut and hindgut with standard media produced many identical or highly similar 16S rDNA sequences found with 16S rDNA clone libraries and next generation sequencing of 16S rDNA amplicons. Despite extensive culturing with identical media, our results do not support the core crop bacterial community hypothesized by recent studies. We cultured a wide variety of bacterial strains from 6 of 7 phylogenetic groups considered core to the honey bee hindgut. Our results reveal that many bacteria prevalent in beebread and the crop are also found in floral nectar, suggesting frequent horizontal transmission. From beebread we uncovered a variety of bacterial phylotypes, including many possible pathogens and food spoilage organisms, and potentially beneficial bacteria including Lactobacillus kunkeei, Acetobacteraceae and many different groups of Actinobacteria. Contributions of these bacteria to colony health may include general hygiene, fungal and pathogen inhibition and beebread preservation. Our results are important for understanding the contribution to pollinator health of both environmentally vectored and core microbiota, and the

  2. Microbial ecology of the hive and pollination landscape: bacterial associates from floral nectar, the alimentary tract and stored food of honey bees (Apis mellifera.

    Directory of Open Access Journals (Sweden)

    Kirk E Anderson

    Full Text Available Nearly all eukaryotes are host to beneficial or benign bacteria in their gut lumen, either vertically inherited, or acquired from the environment. While bacteria core to the honey bee gut are becoming evident, the influence of the hive and pollination environment on honey bee microbial health is largely unexplored. Here we compare bacteria from floral nectar in the immediate pollination environment, different segments of the honey bee (Apis mellifera alimentary tract, and food stored in the hive (honey and packed pollen or "beebread". We used cultivation and sequencing to explore bacterial communities in all sample types, coupled with culture-independent analysis of beebread. We compare our results from the alimentary tract with both culture-dependent and culture-independent analyses from previous studies. Culturing the foregut (crop, midgut and hindgut with standard media produced many identical or highly similar 16S rDNA sequences found with 16S rDNA clone libraries and next generation sequencing of 16S rDNA amplicons. Despite extensive culturing with identical media, our results do not support the core crop bacterial community hypothesized by recent studies. We cultured a wide variety of bacterial strains from 6 of 7 phylogenetic groups considered core to the honey bee hindgut. Our results reveal that many bacteria prevalent in beebread and the crop are also found in floral nectar, suggesting frequent horizontal transmission. From beebread we uncovered a variety of bacterial phylotypes, including many possible pathogens and food spoilage organisms, and potentially beneficial bacteria including Lactobacillus kunkeei, Acetobacteraceae and many different groups of Actinobacteria. Contributions of these bacteria to colony health may include general hygiene, fungal and pathogen inhibition and beebread preservation. Our results are important for understanding the contribution to pollinator health of both environmentally vectored and core microbiota

  3. 乐土生态园发展战略研究%Study on the development strategy of Happy Earth ecological park

    Institute of Scientific and Technical Information of China (English)

    郝景慧; 黄翔

    2012-01-01

      近年来,随着人们生活水平的不断提高,人们的消费观念也随之发生了变化:崇尚生态、文化和绿色消费。本文以乐土生态园为研究背景,通过PEST分析和SWOT分析等理论,从企业宏观环境和企业内部几个方面对乐土生态园的战略环境进行分析,并进一步通过SWOT矩阵分析和内、外部因素评价矩阵量化打分,得出了SO战略。最后结合乐土生态园的实际情况,为企业选择了差异化的竞争战略。%  In the recent years, living standard and consumption pattern has changed responding to the evolving issues of advocate ecological, cultural and green consumption. An in-depth research is undertaken in Happy Earth Ecological Park (HEEP) and the outcome is presented. The author uses relevant theories of strategy management, such as PESTEL analysis, and SWOT analysis to analyze the strategy environment of the HEEP, including macro-environment as well as the internal environment of the enterprises environment. Then further research through SWOT matrix analysis, EFE and IFE, describing the introduction of the HEEP, evaluation matrix generating SO strategy as a result;finally, differentiation strategy is chosen for the HEEP based on the actual situation of the HEEP.

  4. Extreme Narrative Strategies in Sunlight Fleeting from the Ecological Perspective%生态视角下《日光流年》的极致化叙事策略

    Institute of Scientific and Technical Information of China (English)

    邢长远

    2012-01-01

    文章总结了《日光流年》极致化叙事策略的表现,探讨了这种叙事策略的文学生态意义,从生态视角审视了这种叙事策略所带来的叙事困境。%This article summarizes the aspects of the extreme narrative strategies in Sunlight Fleeting.It discusses the ecological significance of such a narrative strategy and examines the narrative predicament brought by this kind of narrative strategy from the ecological perspective.

  5. Ecological Impact of Climate Change on Leaf Economic Strategies Across the Paleocene- Eocene Thermal Maximum, Bighorn Basin, Wyoming

    Science.gov (United States)

    Royer, D. L.; Currano, E. D.; Wilf, P.; Wing, S. L.; Labandeira, C. C.; Lovelock, E. C.

    2007-12-01

    Deciphering the ecological impacts of climate change is a key priority for paleontologists and ecologists alike. An important ecological metric in vegetated settings is the leaf economics spectrum, which represents an adaptive continuum running from rapid resource acquisition to maximized resource retention. This spectrum is comprised of a large number of coordinated traits, including leaf mass per area (LMA), leaf lifespan, photosynthetic rate, nutrient concentration, and palatability to herbivores. Here we apply a recently developed technique for reconstructing LMA to a suite of four isotaphonomic fossil plant sites spanning the Paleocene-Eocene thermal maximum (PETM) in the Bighorn Basin, Wyoming, USA. This technique is based on the biomechanical scaling between petiole width and leaf mass, and it has been calibrated with 65 present-day sites from five continents and tested on two well-known Eocene fossil localities (Bonanza, Utah and Republic, Washington). There are no significant differences in LMA among plants across the PETM. This stasis is present despite a backdrop of extreme climate change during the PETM in this region, including a three-to-four-fold increase in atmospheric CO2, an ~5 °C rise in temperature, and possible drying. Moreover, quantitative measurements of insect herbivory show, on average, a two-fold increase during the PETM relative to before and after the event. We interpret our results to suggest that leaf-economic relationships can, in some situations, partially decouple. More specifically, our documented increase in insect herbivory during the PETM with no concomitant decrease in LMA implies that during this interval less carbon was being captured by plants per unit of investment. Because the rate and magnitude of climate change during the PETM is similar to present-day anthropogenic changes, our results may provide clues for predictions of ecological impacts in the near future.

  6. Protection Measures and Compensation Strategies of Ecological Public Welfare Forest in Changsha City%长沙市生态公益林保护措施及补偿对策

    Institute of Scientific and Technical Information of China (English)

    邱模清

    2012-01-01

    介绍了长沙市生态公益林建设现状及管理措施,分析了该市生态公益林补偿存在的问题,并提出了补偿对策。%Status and management measures of ecological public welfare forest construction in Changsha City were introduced, existing problems in the compensation of ecological public welfare forest were analyzed, and the compensation strategies were proposed.

  7. The Clinical Nutrition Research Agenda in Indonesia and beyond: ecological strategy for food in health care delivery.

    Science.gov (United States)

    Lukito, Widjaja; Wibowo, Lindawati; Wahlqvist, Mark L

    2017-06-01

    Despite progress with the food-associated health agenda in the public health and clinical domains, much remains to be done in Indonesia. There are reasons to be optimistic which include economic development, increasing literacy, progress towards universal health coverage and community organizational arrangements across the archipelago which focus on health through some 10,000 puskesmas. These community health centres are variably staffed with voluntary cadres from the community, bidans (nurses) and general medical practitioners. For more effective prevention and management of nutritionally-related health problems, innovative community and clinical nutrition research and expertise is required. With rapid urbanisation, the growth of the digital economy, increasing socio-economic inequity and climate change, there are imperatives for ecologically sustainable, nonemployment dependent livelihoods which provide energy, food, water, education and health care security. A relevant health care workforce will include those who research and practice clinical nutrition. Here we gather together an account of an extensive body of published and emerging literature which makes a case collectively for a more ecological approach to nutrition and health and how it might revitalise the Indonesian and other health care systems.

  8. Insights into the strategies used by related group II introns to adapt successfully for the colonisation of a bacterial genome.

    Science.gov (United States)

    Martínez-Rodríguez, Laura; García-Rodríguez, Fernando M; Molina-Sánchez, María Dolores; Toro, Nicolás; Martínez-Abarca, Francisco

    2014-01-01

    Group II introns are self-splicing RNAs and site-specific mobile retroelements found in bacterial and organellar genomes. The group II intron RmInt1 is present at high copy number in Sinorhizobium meliloti species, and has a multifunctional intron-encoded protein (IEP) with reverse transcriptase/maturase activities, but lacking the DNA-binding and endonuclease domains. We characterized two RmInt1-related group II introns RmInt2 from S. meliloti strain GR4 and Sr.md.I1 from S. medicae strain WSM419 in terms of splicing and mobility activities. We used both wild-type and engineered intron-donor constructs based on ribozyme ΔORF-coding sequence derivatives, and we determined the DNA target requirements for RmInt2, the element most distantly related to RmInt1. The excision and mobility patterns of intron-donor constructs expressing different combinations of IEP and intron RNA provided experimental evidence for the co-operation of IEPs and intron RNAs from related elements in intron splicing and, in some cases, in intron homing. We were also able to identify the DNA target regions recognized by these IEPs lacking the DNA endonuclease domain. Our results provide new insight into the versatility of related group II introns and the possible co-operation between these elements to facilitate the colonization of bacterial genomes.

  9. Classic, fuzzy and predictive dtc strategies for the PMSM using the bacterial foraging algorithmas an online parameter estimator

    Directory of Open Access Journals (Sweden)

    Gabriel Noriega

    2012-01-01

    Full Text Available Este trabajo presenta una comparación entre cuatro técnicas de control directo de par (DTC aplicadas al accionamiento de la máquina sincrónica deimán permanente: Clásico, Modificado con un sistema de inferencia difusa, Predictivo y Predictivo con inferencia difusa. La estimación de parámetros para las estrategias predictivas es realizado utilizando un algoritmo de búsqueda poblacional basado en Forraje Bacterial, el cuál es capaz de calcular en línea los parámetros de la máquina sincrónica de imán permanente. Los resultados experimentales del par eléctrico y de los enlaces de flujo del estator muestran mejoras significativas para las estrategias predictivas que utilizan algoritmos de estimación paramétrica mediante Forraje Bacterial cuando se comparan con técnicas no predictivas.

  10. Ecology of Fungus Gnats (Bradysia spp. in Greenhouse Production Systems Associated with Disease-Interactions and Alternative Management Strategies

    Directory of Open Access Journals (Sweden)

    Raymond A. Cloyd

    2015-04-01

    Full Text Available Fungus gnats (Bradysia spp. are major insect pests of greenhouse-grown horticultural crops mainly due to the direct feeding damage caused by the larvae, and the ability of larvae to transmit certain soil-borne plant pathogens. Currently, insecticides and biological control agents are being used successively to deal with fungus gnat populations in greenhouse production systems. However, these strategies may only be effective as long as greenhouse producers also implement alternative management strategies such as cultural, physical, and sanitation. This includes elimination of algae, and plant and growing medium debris; placing physical barriers onto the growing medium surface; and using materials that repel fungus gnat adults. This article describes the disease-interactions associated with fungus gnats and foliar and soil-borne diseases, and the alternative management strategies that should be considered by greenhouse producers in order to alleviate problems with fungus gnats in greenhouse production systems.

  11. Distributed and dynamic modelling of hydrology, phosphorus and ecology in the Hampshire Avon and Blashford Lakes: evaluating alternative strategies to meet WFD standards.

    Science.gov (United States)

    Whitehead, P G; Jin, L; Crossman, J; Comber, S; Johnes, P J; Daldorph, P; Flynn, N; Collins, A L; Butterfield, D; Mistry, R; Bardon, R; Pope, L; Willows, R

    2014-05-15

    The issues of diffuse and point source phosphorus (P) pollution in the Hampshire Avon and Blashford Lakes are explored using a catchment model of the river system. A multibranch, process based, dynamic water quality model (INCA-P) has been applied to the whole river system to simulate water fluxes, total phosphorus (TP) and soluble reactive phosphorus (SRP) concentrations and ecology. The model has been used to assess impacts of both agricultural runoff and point sources from waste water treatment plants (WWTPs) on water quality. The results show that agriculture contributes approximately 40% of the phosphorus load and point sources the other 60% of the load in this catchment. A set of scenarios have been investigated to assess the impacts of alternative phosphorus reduction strategies and it is shown that a combined strategy of agricultural phosphorus reduction through either fertiliser reductions or better phosphorus management together with improved treatment at WWTPs would reduce the SRP concentrations in the river to acceptable levels to meet the EU Water Framework Directive (WFD) requirements. A seasonal strategy for WWTP phosphorus reductions would achieve significant benefits at reduced cost. Copyright © 2014 Elsevier B.V. All rights reserved.

  12. Effect of Storage Period on the Changes of Odorous Compound Concentrations and Bacterial Ecology for Identifying the Cause of Odor Production from Pig Slurry

    Science.gov (United States)

    Hwang, Ok Hwa; Cho, Sung Back; Han, Deug Woo; Lee, Sang Ryoung; Kwag, Jeong Hoon; Park, Sung Kwon

    2016-01-01

    Odor from buildings where pigs are housed is generated by anaerobic fermentation of undigested materials in pig slurry stored for several weeks in pit. The objective of this study was to investigate the effect of storage period on the level of odorous compounds in pig slurry and on its bacterial community. A slurry sample (15 L) was taken from the pit of a finisher pig building and incubated in acryl chambers for six- weeks. Slurry for analysis was sampled every two-week. Levels of odorous compounds in the slurry sample were drastically changed after two weeks of storage period; levels of phenols and short chain fatty acids (SCFAs) were decreased (P<0.05), whereas indoles and branched-chain fatty acids (BCFAs) were increased (P<0.05). Among dominant bacteria, Bacteroides and Porphyromonadacese_uc_g revealed a strong positive correlation with the levels of phenols and SCFAs. Populations of AC160630_g, Acholeplasmatales_uc_g, Mollicutes_uc_g and Cloacamonas_f_uc_g positively correlated with indole and BCFAs content. Taken together, levels of odorous compounds were increased after two weeks of storage, possibly because of changes in the predominant bacterial groups to those that use protein as a carbon source in the hypo-carbohydrate conditions. PMID:27642752

  13. Approach and strategy for performing ecological risk assessments for the US Department of Energy`s Oak Ridge Reservation: 1995 revision

    Energy Technology Data Exchange (ETDEWEB)

    Suter, G.W. II; Sample, B.E.; Jones, D.S.; Ashwood, T.L.; Loar, J.M.

    1995-09-01

    The purpose of this document is to provide guidance for planning and performing ecological risk assessments (ERAs) on the Oak Ridge Reservation (ORR). It is the third such document prepared for this purpose. The first ecorisk strategy document described the ERA process and presented a tiered approach to ERAs appropriate to complex sites. The first revision was necessitated by the considerable progress that has been made by the parties to the Federal Facilities Agreement (FFA) for the ORR in resolving specific issues relating to ERA as a result of a series of data quality objectives (DQOs) meetings. The tiered approach to ERAs as recommended in the first document was implemented, generic conceptual models were developed, and a general approach for developing ecological assessment endpoints and measurement endpoints was agreed upon. This revision is necessitated by comments from the US Environmental Protection Agency`s Region IV and the Tennessee Department of Environment and Conservation (TDEC) which clarified and modified the positions taken during the DQO process. In particular, support for the collection of data that would support ERAs for all OUs on the ORR have been withdrawn. Therefore, the work plan developed to fill the reservation-wide data needs identified in the DQO process has also been withdrawn, and portions that are still relevant have been incorporated into this document. The reader should be aware that this guidance is complex and lengthy because it attempts to cover all the reasonable contingencies that were considered to be potentially important to the FFA parties.

  14. The Enterprise Innovative Strategies Based on Ecological Niche Competition%基于生态位竞争的企业创新策略研究

    Institute of Scientific and Technical Information of China (English)

    王秋力

    2013-01-01

    The independence innovation is the majority of enterprise innovation, and the competition between enterprises is the motive force to independence innovation behavior of enterprise. According to the ecological niche theory of enterprise, this paper set up the dynamics model of the enterprise competition, and analyzed the overlap of ecological niche of enterprise, the competition regularity of enterprise and the dynamic stability of enterprise. The enterprise must fix accurately, change traditional competition thought, and establish the innovation strategy which is suitable for enterprise development.%  自主创新是企业创新的主要内容,而企业之间的竞争是企业自主创新行为的原动力。依据企业生态位理论,通过构建企业竞争动力学模型,分析企业生态位镶嵌、企业竞争规律和企业群落的动态稳定性,从企业竞争系数的层次分析竞争和创新行为,认为企业必须准确定位,转变传统竞争思维,建立适合企业发展的自主创新策略。

  15. 建筑设计中的节能生态适宜策略%On energy-saving ecological optimal strategies in architectural design

    Institute of Scientific and Technical Information of China (English)

    况灏; 俞琦; 李焰

    2012-01-01

    根据目前建筑业的能耗情况,从建筑设计角度探讨了节能生态适宜策略,并对建筑外墙保温隔热、门窗节能、楼地面节能、遮阳设计作了全面阐述,通过利用适宜设计手法和节能生态技术,从而减少碳排放量,实现低碳节能的目标。%According to the energy consumption in current architectural industry, the study explores the energy-saving ecological optimal strategies from the architectural design, has the full illustration of the thermal insulation, the energy-saving of windows and doors, the energy-saving at building floors, and the sun-shading design, so as to reduce the carbon emission and realize the low-carbon and energy-saving by adopting the optimal design measures and the energy-saving ecological technology.

  16. ECOLOGICAL CLASSIFICATION OF LAND AND ECOSYSTEM MAPPING. TOWARDS THE IMPLEMENTATION OF ACTION 5 OF THE EUROPEAN BIODIVERSITY STRATEGY TO 2020 IN ITALY.

    Directory of Open Access Journals (Sweden)

    G. Capotorti

    2014-04-01

    Full Text Available The aim of the present paper is to illustrate the basic data and the methodological approach proposed for the implementation of Action 5 of the European Biodiversity Strategy in Italy. In particular, it focuses on a model for ecosystem mapping and characterisation at the country level that has been built with the interdisciplinary involvement of geobotanists, functional ecologists, forest scientists and zoologists. The first operational steps of the model are based on the cartographic integration between potential natural vegetation, biogeographic regions, and land cover maps. The final step entails characterising the mapped ecosystems in terms of Habitats Directive, local occurrence of threatened plant species and faunal components. The model is going to be tested in Italy, but should also be applied elsewhere in Mediterranean Europe, especially in those countries that have a comparable ecological complexity.

  17. An Evolutionary Strategy for All-Atom Folding of the 60-Amino-Acid Bacterial Ribosomal Protein L20

    Science.gov (United States)

    Schug, A.; Wenzel, W.

    2006-01-01

    We have investigated an evolutionary algorithm for de novo all-atom folding of the bacterial ribosomal protein L20. We report results of two simulations that converge to near-native conformations of this 60-amino-acid, four-helix protein. We observe a steady increase of “native content” in both simulated ensembles and a large number of near-native conformations in their final populations. We argue that these structures represent a significant fraction of the low-energy metastable conformations, which characterize the folding funnel of this protein. These data validate our all-atom free-energy force field PFF01 for tertiary structure prediction of a previously inaccessible structural family of proteins. We also compare folding simulations of the evolutionary algorithm with the basin-hopping technique for the Trp-cage protein. We find that the evolutionary algorithm generates a dynamic memory in the simulated population, which leads to faster overall convergence. PMID:16565067

  18. Administrative Ecology

    Science.gov (United States)

    McGarity, Augustus C., III; Maulding, Wanda

    2007-01-01

    This article discusses how all four facets of administrative ecology help dispel the claims about the "impossibility" of the superintendency. These are personal ecology, professional ecology, organizational ecology, and community ecology. Using today's superintendency as an administrative platform, current literature describes a preponderance of…

  19. Marine Ecological Environment Management Based on Ecological Compensation Mechanisms

    Directory of Open Access Journals (Sweden)

    Qunzhen Qu

    2016-12-01

    Full Text Available The level of marine environmental management is a key factor in the successful implementation of marine power strategies. The improvement in management levels of marine environments requires innovation in marine management. In other words, the transformation of marine environmental management into marine ecological environment management must be done in order to achieve sustainable development of the marine economy. As an environmental economic policy that combines both administrative and market measures, ecological compensation mechanisms have significant advantages in marine ecological environment management. Based on the study of the current development of ecological compensation mechanisms in China, through the analysis of the connotation of marine ecological civilization, existing marine ecological protection practices and marine environmental management methods, this paper posits that the current marine ecological environment management in China should be established on the basis of ecological compensation mechanisms. At present, a lack of laws and regulations for overall marine ecological environment management is the key factor restricting the practice of marine ecological environment management. Therefore, it is necessary to explore the current path of marine ecological environment management in China from the perspective of the construction of legal system of ecological compensation law, the establishment of ecological compensation fees, ecological taxes and ecological compensation fund systems, and the clear status for a marine ecological management and supervision body.

  20. Appraising Contemporary Strategies to Combat Multidrug Resistant Gram-Negative Bacterial Infections–Proceedings and Data From the Gram-Negative Resistance Summit

    Science.gov (United States)

    Golan, Yoav; Micek, Scott T.; Shorr, Andrew F.; Restrepo, Marcos I.

    2011-01-01

    The emerging problem of antibiotic resistance, especially among Gram-negative bacteria (GNB), has become a serious threat to global public health. Very few new antibacterial classes with activity against antibiotic-resistant GNB have been brought to market. Renewed and growing attention to the development of novel compounds targeting antibiotic-resistant GNB, as well as a better understanding of strategies aimed at preventing the spread of resistant bacterial strains and preserving the efficacy of existing antibiotic agents, has occurred. The Gram-Negative Resistance Summit convened national opinion leaders for the purpose of analyzing current literature, epidemiologic trends, clinical trial data, therapeutic options, and treatment guidelines related to the management of antibiotic-resistant GNB infections. After an in-depth analysis, the Summit investigators were surveyed with regard to 4 clinical practice statements. The results then were compared with the same survey completed by 138 infectious disease and critical care physicians and are the basis of this article. PMID:21868447

  1. A Versatile Strategy for Production of Membrane Proteins with Diverse Topologies: Application to Investigation of Bacterial Homologues of Human Divalent Metal Ion and Nucleoside Transporters.

    Directory of Open Access Journals (Sweden)

    Cheng Ma

    Full Text Available Membrane proteins play key roles in many biological processes, from acquisition of nutrients to neurotransmission, and are targets for more than 50% of current therapeutic drugs. However, their investigation is hampered by difficulties in their production and purification on a scale suitable for structural studies. In particular, the nature and location of affinity tags introduced for the purification of recombinant membrane proteins can greatly influence their expression levels by affecting their membrane insertion. The extent of such effects typically depends on the transmembrane topologies of the proteins, which for proteins of unknown structure are usually uncertain. For example, attachment of oligohistidine tags to the periplasmic termini of membrane proteins often interferes with folding and drastically impairs expression in Escherichia coli. To circumvent this problem we have employed a novel strategy to enable the rapid production of constructs bearing a range of different affinity tags compatible with either cytoplasmic or periplasmic attachment. Tags include conventional oligohistidine tags compatible with cytoplasmic attachment and, for attachment to proteins with a periplasmic terminus, either tandem Strep-tag II sequences or oligohistidine tags fused to maltose binding protein and a signal sequence. Inclusion of cleavage sites for TEV or HRV-3C protease enables tag removal prior to crystallisation trials or a second step of purification. Together with the use of bioinformatic approaches to identify members of membrane protein families with topologies favourable to cytoplasmic tagging, this has enabled us to express and purify multiple bacterial membrane transporters. To illustrate this strategy, we describe here its use to purify bacterial homologues of human membrane proteins from the Nramp and ZIP families of divalent metal cation transporters and from the concentrative nucleoside transporter family. The proteins are expressed in

  2. Ecology-driven stereotypes override race stereotypes.

    Science.gov (United States)

    Williams, Keelah E G; Sng, Oliver; Neuberg, Steven L

    2016-01-12

    Why do race stereotypes take the forms they do? Life history theory posits that features of the ecology shape individuals' behavior. Harsh and unpredictable ("desperate") ecologies induce fast strategy behaviors such as impulsivity, whereas resource-sufficient and predictable ("hopeful") ecologies induce slow strategy behaviors such as future focus. We suggest that individuals possess a lay understanding of ecology's influence on behavior, resulting in ecology-driven stereotypes. Importantly, because race is confounded with ecology in the United States, we propose that Americans' stereotypes about racial groups actually reflect stereotypes about these groups' presumed home ecologies. Study 1 demonstrates that individuals hold ecology stereotypes, stereotyping people from desperate ecologies as possessing faster life history strategies than people from hopeful ecologies. Studies 2-4 rule out alternative explanations for those findings. Study 5, which independently manipulates race and ecology information, demonstrates that when provided with information about a person's race (but not ecology), individuals' inferences about blacks track stereotypes of people from desperate ecologies, and individuals' inferences about whites track stereotypes of people from hopeful ecologies. However, when provided with information about both the race and ecology of others, individuals' inferences reflect the targets' ecology rather than their race: black and white targets from desperate ecologies are stereotyped as equally fast life history strategists, whereas black and white targets from hopeful ecologies are stereotyped as equally slow life history strategists. These findings suggest that the content of several predominant race stereotypes may not reflect race, per se, but rather inferences about how one's ecology influences behavior.

  3. The Genomic Sequence of the Oral Pathobiont Strain NI1060 Reveals Unique Strategies for Bacterial Competition and Pathogenicity.

    Directory of Open Access Journals (Sweden)

    Youssef Darzi

    Full Text Available Strain NI1060 is an oral bacterium responsible for periodontitis in a murine ligature-induced disease model. To better understand its pathogenicity, we have determined the complete sequence of its 2,553,982 bp genome. Although closely related to Pasteurella pneumotropica, a pneumonia-associated rodent commensal based on its 16S rRNA, the NI1060 genomic content suggests that they are different species thriving on different energy sources via alternative metabolic pathways. Genomic and phylogenetic analyses showed that strain NI1060 is distinct from the genera currently described in the family Pasteurellaceae, and is likely to represent a novel species. In addition, we found putative virulence genes involved in lipooligosaccharide synthesis, adhesins and bacteriotoxic proteins. These genes are potentially important for host adaption and for the induction of dysbiosis through bacterial competition and pathogenicity. Importantly, strain NI1060 strongly stimulates Nod1, an innate immune receptor, but is defective in two peptidoglycan recycling genes due to a frameshift mutation. The in-depth analysis of its genome thus provides critical insights for the development of NI1060 as a prime model system for infectious disease.

  4. Effective Strategies for Diagnosis of Systemic Inflammatory Response Syndrome (SIRS) due to Bacterial Infection in Surgical Patients.

    Science.gov (United States)

    Stubljar, David; Skvarc, Miha

    2015-01-01

    Surgery associated with trauma and soft tissue injuries after surgery significantly activates the systemic immune response. If an infection after surgery occurs, the response is even stronger. Due to spontaneous activation of immune response and elevated biomarkers for sepsis and cytokines, posttraumatic complications such as new-coming postoperative infections are difficult to diagnose. Sepsis as systemic inflammatory response syndrome (SIRS) rapidly progresses through severe sepsis to septic shock and organ failure, and with no applied antibiotic treatment, the disease often ends at death of the patients. In the treatment of non-surgery patients, the biomarkers like white cell blood count, C-reactive protein (CRP) or procalcitonin (PCT) proved to be useful in sepsis recognition. However, diagnostics after surgeries are more complicated and these biomarkers are not ideal. The solution is a sepsis biomarker, which would have high sensitivity and specificity, that can improve diagnostic accuracy of sepsis, should also be measured easily by the patients, and should not be too expensive. We think more sensitive and specific biomarkers such as presepsin (sCD14-ST) or CD64 index on neutrophils could be useful. A diagnosis of sepsis should be based on clinical signs, and clinicians should use biomarker that is not only most sensitive and specific but also is cost effective. Furthermore, confirmation of the bacterial or fungal infection with blood cultures or with the use of broad range polymerase chain reaction (PCR), when culturing is impossible, should be performed.

  5. Ecological Schoolyards.

    Science.gov (United States)

    Danks, Sharon Gamson

    2000-01-01

    Presents design guidelines and organizational and site principles for creating schoolyards where students can learn about ecology. Principles for building schoolyard ecological systems are described. (GR)

  6. Strategies for navigating large areas: a GIS spatial ecology analysis of the bearded saki monkey, Chiropotes sagulatus, in Suriname.

    Science.gov (United States)

    Gregory, Tremaine; Mullett, Amanda; Norconk, Marilyn A

    2014-06-01

    Animals with long day paths and large home ranges expend a considerable amount of energy on travel. Studies have shown that in the interest of reducing energy expenditure, animals selectively navigate the landscape using a variety of strategies. However, these studies have generally focused on terrestrial animals. Here we present data on an exceedingly mobile arboreal animal, bearded saki monkeys, in a topographically variable landscape in Suriname. Using ArcMap and Google Earth, we explore two potential navigation strategies: the nonrandom use of travel areas and the use of ridges in slope navigation. Over a year of data collection, bearded sakis were found to use relatively long travel paths daily, use some areas more intensely than others for travel, and when travel paths were converted to strings of points, 40.3% and 63.9% of the points were located on (50 m from the main ridgeline) or near (100 m from the main ridgeline) ridge tops, respectively. Thus in a habitat of high relief we found support for intensive use of ridge tops or slopes close to ridge tops by bearded sakis. Selective habitat use may be related to surveying tree crowns for fruit by large, fast moving groups of bearded sakis or monitoring the presence of potential predators.

  7. Bacterial surface adaptation

    Science.gov (United States)

    Utada, Andrew

    2014-03-01

    Biofilms are structured multi-cellular communities that are fundamental to the biology and ecology of bacteria. Parasitic bacterial biofilms can cause lethal infections and biofouling, but commensal bacterial biofilms, such as those found in the gut, can break down otherwise indigestible plant polysaccharides and allow us to enjoy vegetables. The first step in biofilm formation, adaptation to life on a surface, requires a working knowledge of low Reynolds number fluid physics, and the coordination of biochemical signaling, polysaccharide production, and molecular motility motors. These crucial early stages of biofilm formation are at present poorly understood. By adapting methods from soft matter physics, we dissect bacterial social behavior at the single cell level for several prototypical bacterial species, including Pseudomonas aeruginosa and Vibrio cholerae.

  8. Diverging strategies to planning an ecologically coherent network of MPAs in the North Sea: the roles of advocacy, evidence and pragmatism in the face of uncertainty.

    Science.gov (United States)

    Caveen, Alex J; Fitzsimmons, Clare; Pieraccini, Margherita; Dunn, Euan; Sweeting, Christopher J; Johnson, Magnus L; Bloomfield, Helen; Jones, Estelle V; Lightfoot, Paula; Gray, Tim S; Stead, Selina M; Polunin, Nicholas V C

    2014-01-01

    The North Sea is one of the most economically important seas in the world due to productive fisheries, extensive oil and gas fields, busy shipping routes, marine renewable energy development and recreational activity. Unsurprisingly, therefore, the use of marine protected areas (here defined widely to include fisheries closed areas and no-take marine reserves) in its management has generated considerable controversy-particularly with regards to the design of a regional ecologically coherent MPA network to meet international obligations. Drawing on three MPA processes currently occurring in the UK North Sea, we examine the real-world problems that make the designation of MPA networks challenging. The political problems include: disagreement among (and within) sectors over policy objectives and priorities, common access to fisheries resources at the EU level increasing the scale at which decisions have to be made and lack of an integrated strategy for implementing protected areas in the North Sea. The scientific problems include the patchy knowledge of benthic assemblages, limited knowledge of fishing gear-habitat interactions, and the increased risk of unforeseen externalities if human activity (predominantly fishing) is displaced from newly protected sites. Diverging stakeholder attitudes to these problems means that there is no consensus on what ecological coherence actually means. Ultimately, we caution against 'quick-fix' solutions that are based on advocacy and targets, as they create confusion and undermine trust in the planning process. We argue for a more pragmatic approach to marine protection that embraces the complexity of the social and political arena in which decisions are made.

  9. The construction and use of bacterial DNA microarrays based on an optimized two-stage PCR strategy

    Directory of Open Access Journals (Sweden)

    Pesta David

    2003-06-01

    Full Text Available Abstract Background DNA microarrays are a powerful tool with important applications such as global gene expression profiling. Construction of bacterial DNA microarrays from genomic sequence data using a two-stage PCR amplification approach for the production of arrayed DNA is attractive because it allows, in principal, the continued re-amplification of DNA fragments and facilitates further utilization of the DNA fragments for additional uses (e.g. over-expression of protein. We describe the successful construction and use of DNA microarrays by the two-stage amplification approach and discuss the technical challenges that were met and resolved during the project. Results Chimeric primers that contained both gene-specific and shared, universal sequence allowed the two-stage amplification of the 3,168 genes identified on the genome of Synechocystis sp. PCC6803, an important prokaryotic model organism for the study of oxygenic photosynthesis. The gene-specific component of the primer was of variable length to maintain uniform annealing temperatures during the 1st round of PCR synthesis, and situated to preserve full-length ORFs. Genes were truncated at 2 kb for efficient amplification, so that about 92% of the PCR fragments were full-length genes. The two-stage amplification had the additional advantage of normalizing the yield of PCR products and this improved the uniformity of DNA features robotically deposited onto the microarray surface. We also describe the techniques utilized to optimize hybridization conditions and signal-to-noise ratio of the transcription profile. The inter-lab transportability was demonstrated by the virtual error-free amplification of the entire genome complement of 3,168 genes using the universal primers in partner labs. The printed slides have been successfully used to identify differentially expressed genes in response to a number of environmental conditions, including salt stress. Conclusions The technique detailed

  10. Development of a bioreactor for remediation of textile effluent and dye mixture: a plant-bacterial synergistic strategy.

    Science.gov (United States)

    Kabra, Akhil N; Khandare, Rahul V; Govindwar, Sanjay P

    2013-03-01

    The objective of the present work was to develop a plant-bacterial synergistic system for efficient treatment of the textile effluents. Decolorization of the dye Scarlet RR and a dye mixture was studied under in vitro conditions using Glandularia pulchella (Sweet) Tronc., Pseudomonas monteilii ANK and their consortium. Four reactors viz. soil, bacteria, plant and consortium were developed that were subjected for treatment of textile effluents and dye mixture. Under in vitro conditions G. pulchella and P. monteilii showed decolorization of the dye Scarlet RR (SRR) by 97 and 84%, within 72 and 96 h respectively, while their consortium showed 100% decolorization of the dye within 48 h. In case of dye mixture G. pulchella, P. monteilii and consortium-PG showed an ADMI removal of 78, 67 and 92% respectively within 96 h. During decolorization of SRR G. pulchella showed induction in the activities of enzymes lignin peroxidase and DCIP reductase while P. monteilii showed induction of laccase, DCIP reductase and tyrosinase, indicating their involvement in the dye metabolism. High Performance Liquid Chromatography (HPLC), Fourier Transform Infra Red Spectroscopy (FTIR) and High Performance Thin Layer Chromatography (HPTLC) confirmed the biotransformation of SRR and dye mixture into different metabolites. Soil, bacteria, plant and consortium reactors performed an ADMI removal of 42, 46, 62 and 93% in the first decolorization cycle while it showed an average ADMI removal of 21, 27, 59 and 93% in the next three (second, third and fourth) decolorization cycles respectively for the dye mixture within 24 h. Consortium reactor showed an average ADMI removal of 95% within 48 and 60 h for textile effluents A and B respectively for three decolorization cycles, while it showed an average TOC, COD and BOD removal of 74, 70 and 70%, 66, 72 and 67%, and 70, 70 and 66% for three decolorization cycles of the dye mixture (second, third and fourth decolorization cycles), effluent A and

  11. Study Progress and Prevention Strategy for Ginger Bacterial Wilt Disease%姜瘟病研究进展和防治策略探讨

    Institute of Scientific and Technical Information of China (English)

    邱正明; 矫振彪; 郭凤领; 陈磊夫; 田延富; 胡燕; 吴金平

    2015-01-01

    Ginger bacterial wilt disease occurred frequently has become the bottleneck for restricting the development of ginger planting industry. The research progress of the symptoms, the pathogens, the pathogenic factors and the infection pathways was summarized. By screening and creating the resource for ginger of the highquality and disease resistance (tolerance), and we obtained resistance materials of bacterial wilt disease. Building new bioactive substances or new genes against pathogen of the bacterial wilt disease by the metagenomic libraryconstructed of the rhizosphere soil microbial of ginger, so we can obtain the new resources and strategies forecological prevention thebacterial wilt disease. By studying the change of soil microbial community for ginger rhizosphere by the theory of the rhizospheremicroecological balance, we can reduce or eliminate thebacterial wilt disease of ginger by the modified for the soil biological activity.%生姜姜瘟病频发已成为制约生姜种植业发展的瓶颈。笔者分析了姜瘟病的发病症状、病原菌、致病环境因子以及侵染路径等方面的研究现状,提出通过筛选、创制“优质、抗(耐)病”的生姜资源,为生姜抗病育种提供新材料;同时,通过构建生姜根际土壤微生物宏基因组文库,挖掘抗姜瘟病病菌的新生物活性物质或新基因,在基因组水平上为姜瘟病的生态防控提供新资源。此外,笔者还利用根际微生态平衡理论,研究了生姜根际土壤微生物群落的变化,通过土壤生物活性的改良,消除或者减轻姜瘟病的危害。

  12. Like Hercules and the Hydra: Trade-offs and strategies in ecological model-building and experimental design.

    Science.gov (United States)

    Inkpen, S Andrew

    2016-06-01

    Experimental ecologists often invoke trade-offs to describe the constraints they encounter when choosing between alternative experimental designs, such as between laboratory, field, and natural experiments. In making these claims, they tend to rely on Richard Levins' analysis of trade-offs in theoretical model-building. But does Levins' framework apply to experiments? In this paper, I focus this question on one desideratum widely invoked in the modelling literature: generality. Using the case of generality, I assess whether Levins-style treatments of modelling provide workable resources for assessing trade-offs in experimental design. I argue that, of four strategies modellers employ to increase generality, only one may be unproblematically applied to experimental design. Furthermore, modelling desiderata do not have obvious correlates in experimental design, and when we define these desiderata in a way that seem consistent with ecologists' usage, the trade-off framework falls apart. I conclude that a Levins-inspired framework for modelling does not provide the content for a similar approach to experimental practice; this does not, however, mean that it cannot provide the form.

  13. Effects of dietary combinations of organic acids and medium chain fatty acids on the gastrointestinal microbial ecology and bacterial metabolites in the digestive tract of weaning piglets.

    Science.gov (United States)

    Zentek, J; Ferrara, F; Pieper, R; Tedin, L; Meyer, W; Vahjen, W

    2013-07-01

    Organic short and medium chain fatty acids are used in diets for piglets because they have an impact on the digestive processes and the intestinal microbiota. In this study, 48 pens (2 piglets/pen) were assigned randomly to 4 diets, without additive (control), with organic acids (OA; 0.416% fumaric and 0.328% lactic acid), with medium chain fatty acids (MCFA; 0.15% caprylic and capric acid), and a combination of OA and MCFA, to assess changes in the gastrointestinal microbiota with 12 pens per diet. Eight to nine piglets from each group were euthanized after 4 wk. Organic acids, MCFA, and pH in the digesta were determined and the intestinal microbiota was quantified by real-time PCR. The different diets had no effect on the growth performance. Concentration of added fumaric acid was below the detection limit in the upper small intestine whereas the concentration of lactic acid in the digesta was not affected by the treatments. The added MCFA was recovered in the MCFA treated groups in the stomach, but the concentrations declined in the upper small intestine. Concentration of short chain fatty acids was reduced in the colon digesta in piglets fed diets with OA compared with those fed unsupplemented diets (P = 0.029). The MCFA resulted in a pH reduction of the digesta, likely because of the effect on bacterial acid production. The addition of OA increased cell counts of Bacteroides-Porphyromonas-Prevotella group and clostridial clusters XIVa, I, and IV in the stomach, the clostridial cluster XIVa in the jejunum, and Bacteroides-Porphyromonas-Prevotella in the ileum and reduced counts of Streptococcus spp. in the colon (P < 0.05). The MCFA induced only minor changes in the gastrointestinal microbiota but increased cell counts for the Escherichia-Hafnia-Shigella group in the jejunum and the clostridial cluster XIVa in the colon digesta (P < 0.05). In the colon of piglets fed diets with organic OA, reduced mean cell counts of STb (est-II) positive Escherichia coli were

  14. Cancro bacteriano da videira: etiologia, epidemiologia e medidas de controle Bacterial canker of grapevine: etiology, epidemiology and control strategies

    Directory of Open Access Journals (Sweden)

    Ana Rosa Peixoto Nascimento

    2004-02-01

    Full Text Available No início de 1998, o cancro bacteriano da videira, causado pela bactéria Xanthomonas campestris pv. viticola, foi detectado pela primeira vez, no Brasil, em parreirais do Submédio São Francisco, onde a doença vem ocasionando prejuízos nas cultivares suscetíveis Red Globe, Itália, Festival, Brasil, Piratininga, Patrícia, Benitaka e Catalunha. Os sintomas, nas folhas, surgem como pontos necróticos (1 a 2mm de diâmetro com ou sem halos amarelados, algumas vezes coalescendo e causando a morte de extensas áreas do limbo foliar. Nas nervuras e pecíolos, nos ramos e ráquis dos frutos, formam-se manchas escuras alongadas que evoluem para fissuras longitudinais de coloração negra conhecidas como cancros. Descoloração vascular é também observada. As bagas são desuniformes em tamanho e cor podendo apresentar lesões necróticas. A disseminação do patógeno ocorre através de material propagativo infectado, material de colheita (contentores, tesouras de poda e raleio, luvas, tratos culturais (desbrota, poda, raleio de bagas, colheita, ventos e chuvas. Apesar da região apresentar um curto período chuvoso, a disseminação da bactéria é mais eficiente durante essa época. Em condições de umidade e temperatura elevadas, o patógeno sobrevive em restos de cultura. Para o controle da doença, recomenda-se o uso de material propagativo sadio, inspeção no campo, poda drástica de órgãos infectados, eliminação de plantas severamente infectadas, condução da época de poda de produção, desinfestação de veículos, de equipamentos e de materiais para poda, utilização de fungicidas protetores cúpricos e tiocarbamatos, e utilização de quebra-ventos para reduzir a disseminação do patógeno.In the begining of 1998, bacterial canker of grapevine, caused by the bacterium Xanthomonas campestris pv. viticola, was detected for the first time in Brazil in vineyards of the “Submédio São Francisco”. Losses in susceptible

  15. Ecological carbon sequestration via wood harvest and storage (WHS): Can it be a viable climate and energy strategy?

    Science.gov (United States)

    Zeng, N.; Zaitchik, B. F.; King, A. W.; Wullschleger, S. D.

    2016-12-01

    A carbon sequestration strategy is proposed in which forests are sustainably managed to optimal carbon productivity, and a fraction of the wood is selectively harvested and stored to prevent decomposition under anaerobic, dry or cold conditions. Because a large flux of CO2 is constantly assimilated into the world's forests via photosynthesis, cutting off its return pathway to the atmosphere forms an effective carbon sink. The live trees serve as a `carbon scrubber' or `carbon remover' that provides continuous sequestration (negative emissions). The stored wood is a semi-permanent carbon sink, but also serves as a `biomass/bioenergy reserve' that could be utilized in the future.Based on forest coarse wood production rate, land availability, bioconservation and other practical constraints, we estimate a carbon sequestration potential for wood harvest and storage (WHS) 1-3 GtC y-1. The implementation of such a scheme at our estimated lower value of 1 GtC y-1 would imply a doubling of the current world wood harvest rate. This can be achieved by harvesting wood at a modest harvesting intensity of 1.2 tC ha-1 y-1, over a forest area of 8 Mkm2 (800 Mha). To achieve the higher value of 3 GtC y-1, forests need to be managed this way on half of the world's forested land, or on a smaller area but with higher harvest intensity. However, the actual implementation may face challenges that vary regionally. We propose `carbon sequestration and biomass farms' in the tropical deforestation frontiers with mixed land use for carbon, energy, agriculture, as well as conservation. In another example, the forests damaged by insect infestation could be thinned to reduce fire and harvested for carbon sequestration.We estimate a cost of $10-50/tCO2 for harvest and storage around the landing site. The technique is low tech, distributed and reversible. We compare the potential of WHS with a number of other carbon sequestration methods. We will also show its impact on future land carbon sink

  16. 河南省生态农业发展前景与推进策略%The Prospects for the Development of Ecological Agriculture and Promoting Strategy in Henan Province

    Institute of Scientific and Technical Information of China (English)

    郭素玲; 李盼; 刘凯华

    2016-01-01

    As a big agricultural province of Henan, it is the major responsibility of food security in the world. The urgency and importance of ecological agriculture of Henan province are discussed, Henan ecological agriculture can't be separated from the two red lines of cultivated land protection and ecological environment protection. Under the premise of ecological agriculture broad prospects, put forward the promoting path and recommend strategies of the whole industry chain ecological agriculture in Henan , speed up the support for ecological agriculture scientific planning, industrial management, construction the system of ecological agriculture technology, innovate rural financial, speed up the transfer of land to achieve scale economies, which greatly enhance the comprehensive benefits of ecological agriculture in Henan province.%河南是农业大省,对粮安天下责任重大。通过实证论述河南省发展生态农业的紧迫性和重要性,提出河南省生态农业发展离不开耕地保护和生态环境保护“两条红线”。在得出河南省生态农业前景广阔的前提下,提出河南省全产业链生态农业推进路径及推进策略,加快生态农业科学规划、产业化经营、建设生态农业技术支撑体系、创新农村金融、加快土地流转、实现规模效益将极大提升河南省生态农业的综合效益。

  17. Vimentin in Bacterial Infections

    DEFF Research Database (Denmark)

    Mak, Tim N; Brüggemann, Holger

    2016-01-01

    Despite well-studied bacterial strategies to target actin to subvert the host cell cytoskeleton, thus promoting bacterial survival, replication, and dissemination, relatively little is known about the bacterial interaction with other components of the host cell cytoskeleton, including intermediate...... filaments (IFs). IFs have not only roles in maintaining the structural integrity of the cell, but they are also involved in many cellular processes including cell adhesion, immune signaling, and autophagy, processes that are important in the context of bacterial infections. Here, we summarize the knowledge...... about the role of IFs in bacterial infections, focusing on the type III IF protein vimentin. Recent studies have revealed the involvement of vimentin in host cell defenses, acting as ligand for several pattern recognition receptors of the innate immune system. Two main aspects of bacteria...

  18. Ecological Environment Problems in Minjiang River Watershed within Sanming City and Their Sustainable Control Strategies%三明市境内闽江流域生态环境问题及其可持续治理对策

    Institute of Scientific and Technical Information of China (English)

    詹国明

    2015-01-01

    本文以三明市为例,分析了三明市境内闽江流域基本情况和存在问题,依据流域生态治理的原则,提出三明市境内闽江流域生态治理的对策,旨在为流域的生态治理提供决策参考依据。%In this paper a case study of Sanming City was made and the basic information of Minjiang River Watershed within the city and existing problems were analyzed. Some strategies for ecological management of Minjiang River Watershed within the city were put forward based on watershed ecological management principles with the aim of providing decision-making reference for ecological management of the watershed.

  19. Ecology-driven stereotypes override race stereotypes

    OpenAIRE

    Williams, Keelah E. G.; Sng, Oliver; Neuberg, Steven L.

    2015-01-01

    Ecological features shape people’s goals, strategies, and behaviors. Our research suggests that social perceivers possess a lay understanding of ecology’s influence on behavior, resulting in ecology-driven stereotypes. Moreover, because race is confounded with ecology in the United States, Americans’ stereotypes about racial groups may actually reflect their stereotypes about these groups’ presumed home ecologies. In a series of studies, we demonstrate that (i) individuals possess ecology-dri...

  20. Bacterial Vaginosis

    Science.gov (United States)

    ... Form Controls Cancel Submit Search the CDC Bacterial Vaginosis (BV) Note: Javascript is disabled or is not ... STD on Facebook Sexually Transmitted Diseases (STDs) Bacterial Vaginosis – CDC Fact Sheet Language: English (US) Españ ...

  1. Bacterial Vaginosis

    Science.gov (United States)

    ... Issues > Conditions > Sexually Transmitted > Bacterial Vaginosis Health Issues Listen Español Text Size Email Print Share Bacterial Vaginosis Page Content Bacterial vaginosis (BV) is the most common vaginal infection in sexually active teenaged girls . It appears to be caused by ...

  2. 衡水湖湿地生态建设“四护”策略构想%A New Strategy of wetland Ecological Construction——A Case Study of Hengshui Lake

    Institute of Scientific and Technical Information of China (English)

    韩伏彬; 石宝军

    2012-01-01

    According to a literature study on wetlands ecology in China, the article put forward a new strategy of wetland ecological construction by taking Hengshui Lake as a case study, the strategy includes the following 4 components, policy support, rescue in action, conservation for development and protection in emotion. Specific measures or means were contained in the new strategy. The components are interrelated, closely connected and inseparable, forming an integrative complete system for wetland ecological development.%根据对国内湿地生态研究文献的整理,以衡水湖为个案,总结出湿地生态建设“四护”策略,即湿地生态政策上的“拥护”,行动上的“救护”,发展上的“养护”,情感上的“守护”.“四护”策略包含有具体延伸性的措施或手段,四者之间相互联系、密不可分,构成湿地生态发展的一个有机整体.

  3. Evaluation of daptomycin treatment of Staphylococcus aureus bacterial endocarditis: an in vitro and in vivo simulation using historical and current dosing strategies.

    Science.gov (United States)

    Rose, Warren E; Rybak, Michael J; Kaatz, Glenn W

    2007-08-01

    A failure to daptomycin therapy and subsequent emergence of a daptomycin non-susceptible isolate occurred during the 1990 clinical investigation of daptomycin for the treatment of Staphylococcus aureus bacteraemia and endocarditis. We attempted to determine if this occurrence was reproducible in vitro and if it could be prevented by various daptomycin dosing strategies. The daptomycin susceptible parent strain (SA-675) and the subsequent non-susceptible derivative (SA-684) were evaluated. In the rabbit endocarditis model, daptomycin 3 mg/kg every 8 h for 4 days was administered to simulate the study patient's pharmacokinetic exposure. Daptomycin doses of 1.5 and 3 mg/kg every 12 h and 6 and 10 mg/kg every 24 and 48 h were simulated in the in vitro model with simulated endocardial vegetations (SEVs). Daptomycin significantly reduced bacterial counts of SA-675 in rabbits, but one in 10(5)-10(6) organisms from vegetations of one animal had an 8-fold increase in MIC. Daptomycin 1.5 mg/kg every 12 h in the in vitro model demonstrated no activity against either strain; reduced susceptibility emerged in SA-675 (4-fold increase in MIC). Bactericidal activity was noted with 6 and 10 mg/kg dosing against SA-675 with no resistance detected. The activity of the 6 mg/kg regimen was reduced against SA-684 but significantly improved activity was noted with 10 mg/kg daily. The emergence of resistance was successfully recreated at suboptimal dosing regimens while the current recommended regimen of 6 mg/kg/day prevented the emergence of non-susceptible mutants. Daptomycin 10 mg/kg/day demonstrated even more enhanced killing. Further investigation with daptomycin 10 mg/kg is warranted.

  4. A high-throughput strategy for screening of bacterial artificial chromosome libraries and anchoring of clones on a genetic map constructed with single nucleotide polymorphisms

    Directory of Open Access Journals (Sweden)

    Deal Karin R

    2009-01-01

    Full Text Available Abstract Background Current techniques of screening bacterial artificial chromosome (BAC libraries for molecular markers during the construction of physical maps are slow, laborious and often assign multiple BAC contigs to a single locus on a genetic map. These limitations are the principal impediment in the construction of physical maps of large eukaryotic genomes. It is hypothesized that this impediment can be overcome by screening multidimensional pools of BAC clones using the highly parallel Illumina GoldenGate™ assay. Results To test the efficacy of the Golden Gate assay in BAC library screening, multidimensional pools involving 302976 Aegilops tauschii BAC clones were genotyped for the presence/absence of specific gene sequences with multiplexed Illumina GoldenGate oligonucleotide assays previously used to place single nucleotide polymorphisms on an Ae. tauschii genetic map. Of 1384 allele-informative oligonucleotide assays, 87.6% successfully clustered BAC pools into those positive for a BAC clone harboring a specific gene locus and those negative for it. The location of the positive BAC clones within contigs assembled from 199190 fingerprinted Ae. tauschii BAC clones was used to evaluate the precision of anchoring of BAC clones and contigs on the Ae. tauschii genetic map. For 41 (95% assays, positive BAC clones were neighbors in single contigs. Those contigs could be unequivocally assigned to loci on the genetic map. For two (5% assays, positive clones were in two different contigs and the relationships of these contigs to loci on the Ae. tauschii genetic map were equivocal. Screening of BAC libraries with a simple five-dimensional BAC pooling strategy was evaluated and shown to allow direct detection of positive BAC clones without the need for manual deconvolution of BAC clone pools. Conclusion The highly parallel Illumina oligonucleotide assay is shown here to be an efficient tool for screening BAC libraries and a strategy for high

  5. Bacterial Sialidase

    Science.gov (United States)

    2004-01-01

    Data shows that elevated sialidase in bacterial vaginosis patients correlates to premature births in women. Bacterial sialidase also plays a significant role in the unusual colonization of Pseudomonas aeruginosa in cystic fibrosis patients. Crystals of Salmonella sialidase have been reproduced and are used for studying the inhibitor-enzyme complexes. These inhibitors may also be used to inhibit a trans-sialidase of Trypanosome cruzi, a very similar enzyme to bacterial sialidase, therefore preventing T. cruzi infection, the causitive agent of Chagas' disease. The Center for Macromolecular Crystallography suggests that inhibitors of bacterial sialidases can be used as prophylactic drugs to prevent bacterial infections in these critical cases.

  6. 理解生态文明:从哲学思想到国家发展战略%Understanding Ecological Civilization:From Philosophy to National Development Strategy

    Institute of Scientific and Technical Information of China (English)

    俞海; 张永亮; 高国伟; 张燕

    2015-01-01

    系统易懂地阐释生态文明概念,对于帮助国际社会清晰地理解和认识中国的生态文明,以及在全球视野下推进生态文明建设至关重要。中国政府提出的生态文明建设已经从过去传统的哲学思想上升为国家的发展战略,是具体的、可理解的、可操作的国家治理概念和术语。理解生态文明建设的要点包括:建设生态文明是中国国家发展总体战略的核心构成,是中国国家治国理念和发展战略的转变,是国家环境与发展转型的整体性战略,其路径是将生态文明融入到经济、政治、社会和文化等领域建设的全过程和各方面,其关键手段和工具是大幅提高经济绿色化程度,其主阵地和根本措施是加强环境保护。%The systematic and understandable explanation is vital for the international community to clearly understanding the concept of China’s ecological civilization, as well as for promoting the ecological civilization construction under the global vision. Ecological civilization is being raised from a traditional philosophy to a national development strategy, and becoming a concrete, intelligible and operable concept and terminology for national governance. Main points for understanding ecological civilization including:of ecological civilizationconstruction is the core element of China’s national overall development strategy, the transformation of China’s national governance concept and strategy, and the overall strategy of the country’s environment and development transition. The path of ecological civilization calls for its integration into all aspects of economic, political, cultural, and social progress. The key approach is to substantially increase the green extent of the economy, and the main front and fundamental measure is environmental protection.

  7. Sampling Terrestrial Environments for Bacterial Polyketides

    Directory of Open Access Journals (Sweden)

    Patrick Hill

    2017-04-01

    Full Text Available Bacterial polyketides are highly biologically active molecules that are frequently used as drugs, particularly as antibiotics and anticancer agents, thus the discovery of new polyketides is of major interest. Since the 1980s discovery of polyketides has slowed dramatically due in large part to the repeated rediscovery of known compounds. While recent scientific and technical advances have improved our ability to discover new polyketides, one key area has been under addressed, namely the distribution of polyketide-producing bacteria in the environment. Identifying environments where producing bacteria are abundant and diverse should improve our ability to discover (bioprospect new polyketides. This review summarizes for the bioprospector the state-of-the-field in terrestrial microbial ecology. It provides insight into the scientific and technical challenges limiting the application of microbial ecology discoveries for bioprospecting and summarizes key developments in the field that will enable more effective bioprospecting. The major recent efforts by researchers to sample new environments for polyketide discovery is also reviewed and key emerging environments such as insect associated bacteria, desert soils, disease suppressive soils, and caves are highlighted. Finally strategies for taking and characterizing terrestrial samples to help maximize discovery efforts are proposed and the inclusion of non-actinomycetal bacteria in any terrestrial discovery strategy is recommended.

  8. Coastal Adaptation and Ecological Engineering

    Science.gov (United States)

    Cheong, S. M.

    2014-12-01

    Ecological engineering combines ecology and engineering to sustain coastal environment and facilitate adaptation to climate change. This paper discusses how the cases of mangroves, oyster reefs, and marshes help mainstream climate change with ecosystem conservation. It demonstrates the benefits of combining strategies to combat changing climate given the financial and political constraints.

  9. Antimicrobials for bacterial bioterrorism agents.

    Science.gov (United States)

    Sarkar-Tyson, Mitali; Atkins, Helen S

    2011-06-01

    The limitations of current antimicrobials for highly virulent pathogens considered as potential bioterrorism agents drives the requirement for new antimicrobials that are suitable for use in populations in the event of a deliberate release. Strategies targeting bacterial virulence offer the potential for new countermeasures to combat bacterial bioterrorism agents, including those active against a broad spectrum of pathogens. Although early in the development of antivirulence approaches, inhibitors of bacterial type III secretion systems and cell division mechanisms show promise for the future.

  10. 生态文明与循环经济同步发展策略%The Strategy of Ecological Civilization and the Synchronous Development of Circular Economy

    Institute of Scientific and Technical Information of China (English)

    陶晓娟

    2015-01-01

    The development of circular economy is one of the important methods for the construction of ecological civilization . This paper specific analysis the relationship of ecological civilization and the circular economy ,the existing problems of Chinese current development of circular economy ,the construction of ecological civilization and the route of synchronous development of ecological civilization and the circular economy.%实现生态文明建设的重要手段之一就是发展循环经济,文章分析了生态文明与循环经济的内在联系,通过当前我国发展循环经济、建设生态文明存在的问题的解析,探讨了实现生态文明与循环经济同步发展的路径。

  11. Genomic analysis of bacterial mycophagy

    NARCIS (Netherlands)

    Mela, Francesca

    2011-01-01

    The study of bacterial-fungal interactions is essential to obtain a better understanding of terrestrial microbial ecology and may lie at the basis of novel applications in agriculture, food industry and human health. Nevertheless, the incentives, the genetic determinants and the mechanisms that

  12. Surface-motility induction, attraction and hitchhiking between bacterial species promote dispersal on solid surfaces.

    Science.gov (United States)

    Hagai, Efrat; Dvora, Reut; Havkin-Blank, Tal; Zelinger, Einat; Porat, Ziv; Schulz, Stefan; Helman, Yael

    2014-05-01

    The ability to move on solid surfaces provides ecological advantages for bacteria, yet many bacterial species lack this trait. We found that Xanthomonas spp. overcome this limitation by making use of proficient motile bacteria in their vicinity. Using X. perforans and Paenibacillus vortex as models, we show that X. perforans induces surface motility, attracts proficient motile bacteria and 'rides' them for dispersal. In addition, X. perforans was able to restore surface motility of strains that lost this mode of motility under multiple growth cycles in the lab. The described interaction occurred both on agar plates and tomato leaves and was observed between several xanthomonads and motile bacterial species. Thus, suggesting that this motility induction and hitchhiking strategy might be widespread and ecologically important. This study provides an example as to how bacteria can rely on the abilities of their neighboring species for their own benefit, signifying the importance of a communal organization for fitness.

  13. 内蒙古兴安盟草原生态现状及可持续发展对策%Current Ecological Status of Grassland in Xingan League of Inner Mongolia and Sustainable Development Strategy

    Institute of Scientific and Technical Information of China (English)

    凌红波; 姜永成

    2011-01-01

    Based on the current status of grassland of Xingan League in Inner Mongolia, the current ecological status of grassland was elaborated, and sustainable grassland development strategies were recommended from implementation of "Two Right One System", sustainable use of grassland resource, expanding improved forage area, strengthening grass industry ecological status and controlling pests and mice in grassland.%从内蒙古兴安盟草原的实际出发,论述了草原生态现状,并从完善草原"双权一制"、合理利用草原资源、扩大人工种草比例、强化草业生态主体地位、加强草原治虫灭鼠工作等方面提出了草原可持续发展的对策.

  14. The Application of Ecological Technology Strategies in Norman Foster's Architectural Design Works%生态技术策略在诺曼·福斯特建筑设计作品中的应用

    Institute of Scientific and Technical Information of China (English)

    杨丽

    2012-01-01

    In this paper,the architectural design works of Norman Foster were introduced, and the applied ecological technology strategies and the corresponding effects were analyzed. For these works, the inspirational creative thinking was embodied based on Foster's handing capacity of ecological environment,which could provide several suggestions for architectural design of China.%本文通过对诺曼·福斯特建筑作品的介绍,分析了其建筑作品中所采用的生态技术策略以及达到的效果.诺曼·福斯特对现代建筑生态环境的把握和处理展现了其独特的具有启迪性的创造性思维,可为我国今后的建筑设计提供新的思路.

  15. Study on the Strategy of City Landscape Planning Based on Ecological Idea%基于生态理念的城市景观规划策略研究

    Institute of Scientific and Technical Information of China (English)

    刘薇

    2014-01-01

    The development of the city landscape planning and design cannot ignore the use and protection of the natural resources. In this paper, through the analysis of the significa-nce and the concept of city landscape planning based on eco-logical ideas, the author put forward strategy of applying na-tural resource in landscape planning to promote ecology and landscape to develop in harmony.%城市景观规划设计的发展中不能忽视对自然资源的利用和保护。本文通过对基于生态理念的城市景观规划的内涵与意义的分析,提出了在景观规划中应用自然资源的策略,以期将生态学与景观学共同促进,和谐发展。

  16. Ecology-driven stereotypes override race stereotypes

    Science.gov (United States)

    Williams, Keelah E. G.; Sng, Oliver; Neuberg, Steven L.

    2016-01-01

    Why do race stereotypes take the forms they do? Life history theory posits that features of the ecology shape individuals’ behavior. Harsh and unpredictable (“desperate”) ecologies induce fast strategy behaviors such as impulsivity, whereas resource-sufficient and predictable (“hopeful”) ecologies induce slow strategy behaviors such as future focus. We suggest that individuals possess a lay understanding of ecology’s influence on behavior, resulting in ecology-driven stereotypes. Importantly, because race is confounded with ecology in the United States, we propose that Americans’ stereotypes about racial groups actually reflect stereotypes about these groups’ presumed home ecologies. Study 1 demonstrates that individuals hold ecology stereotypes, stereotyping people from desperate ecologies as possessing faster life history strategies than people from hopeful ecologies. Studies 2–4 rule out alternative explanations for those findings. Study 5, which independently manipulates race and ecology information, demonstrates that when provided with information about a person’s race (but not ecology), individuals’ inferences about blacks track stereotypes of people from desperate ecologies, and individuals’ inferences about whites track stereotypes of people from hopeful ecologies. However, when provided with information about both the race and ecology of others, individuals’ inferences reflect the targets’ ecology rather than their race: black and white targets from desperate ecologies are stereotyped as equally fast life history strategists, whereas black and white targets from hopeful ecologies are stereotyped as equally slow life history strategists. These findings suggest that the content of several predominant race stereotypes may not reflect race, per se, but rather inferences about how one’s ecology influences behavior. PMID:26712013

  17. ANALYSIS OF GREEN ECOLOGICAL DESIGN STRATEGY OF THE“ALL GREEN” BUILDING IN 2013SD%“ALL GREEN”建筑绿色生态设计策略解析

    Institute of Scientific and Technical Information of China (English)

    许莹莹; 蔡华

    2015-01-01

    This paper expounded the basic strategy of green ecological design by taking the solar house building“ALL GREEN”in International Solar Decathlon competition for example.In the passive ecological strategy, the paper Analysed the methods and specialities of natural lighting, natural ventilation, as well as building structural system;in the active ecological strategy, the paper introduced the methods and specialities of solar photovoltaic roof integration, solar hot water system, reclaimed water system and intelligent residential system. The industrialization and marketization of“ALL GREEN” were analyzed, finally it was summarized the defects in the design and enlightenment from it, it was expected to have some reference to the design of similar solar residential houses with zero energy.%以国际太阳能十项全能竞赛中的太阳能小屋建筑“ALL GREEN”为例,阐述了绿色生态设计的基本策略。在被动式生态策略上分析形体布局、自然采光通风、构造体系的设计特点及方法;在主动式生态策略上介绍了太阳能光伏屋面一体化、太阳能热水系统、中水系统、智能家居的设计特点及方法,并对其工业化与市场化进行分析,最后总结设计的不足及得到的启示,期望对相似的零能耗太阳能住宅设计起到一定的参考。

  18. Community Ecology

    CERN Document Server

    1988-01-01

    This book presents the proceedings of a workshop on community ecology organized at Davis, in April, 1986, sponsored by the Sloan Foundation. There have been several recent symposia on community ecology (Strong et. al., 1984, Diamond and Case, 1987) which have covered a wide range of topics. The goal of the workshop at Davis was more narrow: to explore the role of scale in developing a theoretical approach to understanding communities. There are a number of aspects of scale that enter into attempts to understand ecological communities. One of the most basic is organizational scale. Should community ecology proceed by building up from population biology? This question and its ramifications are stressed throughout the book and explored in the first chapter by Simon Levin. Notions of scale have long been important in understanding physical systems. Thus, in understanding the interactions of organisms with their physical environment, questions of scale become paramount. These more physical questions illustrate the...

  19. Ecological Modernization

    NARCIS (Netherlands)

    Mol, A.P.J.

    2006-01-01

    The Encyclopedia of Globalization provides a thorough understanding of the theoretical underpinnings of globalization as well as the various historical and analytical interpretations. Consisting of over 400 entries, coverage includes key cultural, ecological, economic, geographical, historical, poli

  20. Cognitive ecology.

    Science.gov (United States)

    Hutchins, Edwin

    2010-10-01

    Cognitive ecology is the study of cognitive phenomena in context. In particular, it points to the web of mutual dependence among the elements of a cognitive ecosystem. At least three fields were taking a deeply ecological approach to cognition 30 years ago: Gibson's ecological psychology, Bateson's ecology of mind, and Soviet cultural-historical activity theory. The ideas developed in those projects have now found a place in modern views of embodied, situated, distributed cognition. As cognitive theory continues to shift from units of analysis defined by inherent properties of the elements to units defined in terms of dynamic patterns of correlation across elements, the study of cognitive ecosystems will become an increasingly important part of cognitive science.

  1. Bacterial gastroenteritis

    Science.gov (United States)

    ... most common types of bacterial gastroenteritis in a couple of days. The goal is to make you feel better and avoid dehydration. Drinking enough fluids and learning what to eat will help ease symptoms. You ...

  2. Bacterial vaginosis

    National Research Council Canada - National Science Library

    Islam, Aliya; Safdar, Anjum; Malik, Ayesha

    2009-01-01

    To estimate the frequency of bacterial vaginosis in women with preterm labour. Descriptive cross sectional study carried out in department of Obstetrics and Gynaecology, Military Hospital and Army Medical College Laboratory, Rawalpindi...

  3. Livelihood Selection and Risk Reduction Strategies for Herdsmen in Ecological Migration Project Based on the Survey of 3 Migrant Villages in S Banner of Inner Mongolia

    Institute of Scientific and Technical Information of China (English)

    WU Gui-ying

    2012-01-01

    Through the survey of 3 different grassland migrant villages in S Banner,the author studied the influence of ecological migration policies on migrants,and analyzed livelihood selection and adaptation of migrants in the new environment.Finally,the author put forward corresponding countermeasures,including migration without forbidding grazing,turn to the secondary and tertiary industry,and return to animal husbandry.

  4. Production Status Quo of Ecological Organic Tobacco and Its Developing Strategies%我国生态有机烟叶生产现状及发展对策

    Institute of Scientific and Technical Information of China (English)

    梁伟; 齐永杰; 邓宾玲; 韦建玉; 孙建生

    2013-01-01

    介绍了生态有机烟叶的概念和国内外生产概况,在分析生态有机烟叶具有外观质量、化学成分的协调性、评吸质量和安全性等优势的前提下,针对我国目前生态有机烟叶生产中存在的烟叶质量安全意识不高、生产技术标准不规范、商品有机肥成本较高、烟叶产量不高等问题,提出了开发生态有机烟叶要选择优良的生态环境、加大科技投入、实行标准化生产、提高产量等对策。%The concept of ecological organic tobacco and its production status quo in China and abroad were reviewed at first. Then, the advantages of ecological organic tobacco were analyzed, including appearance quality, coordination of chemical components, smoking quality and safety. But there were also some problems in production, such as weak safety awareness in tobacco quality, no standardized production techniques, relatively high cost of commercial organic fertilizer, and low tobacco yield. In the end, the developing strategies for ecological organic tobacco were put forward, including choosing great ecological environment, increasing technical input, applying standardized production, and increasing yield.

  5. Dynamic Effects of Biochar on the Bacterial Community Structure in Soil Contaminated with Polycyclic Aromatic Hydrocarbons.

    Science.gov (United States)

    Song, Yang; Bian, Yongrong; Wang, Fang; Xu, Min; Ni, Ni; Yang, Xinglun; Gu, Chenggang; Jiang, Xin

    2017-08-16

    Amending soil with biochar is an effective soil remediation strategy for organic contaminants. This study investigated the dynamic effects of wheat straw biochar on the bacterial community structure during remediation by high-throughput sequencing. The wheat straw biochar amended into the soil significantly reduced the bioavailability and toxicity of polycyclic aromatic hydrocarbons (PAHs). Biochar amendment helped to maintain the bacterial diversity in the PAH-contaminated soil. The relationship between the immobilization of PAHs and the soil bacterial diversity fit a quadratic model. Before week 12 of the incubation, the incubation time was the main factor contributing to the changes in the soil bacterial community structure. However, biochar greatly affected the bacterial community structure after 12 weeks of amendment, and the effects were dependent upon the biochar type. Amendment with biochar mainly facilitated the growth of rare bacterial genera (relative abundance of 0.01-1%) in the studied soil. Therefore, the application of wheat straw biochar into PAH-contaminated soil can reduce the environmental risks of PAHs and benefit the soil microbial ecology.

  6. Ecological epigenetics.

    Science.gov (United States)

    Kilvitis, Holly J; Alvarez, Mariano; Foust, Christy M; Schrey, Aaron W; Robertson, Marta; Richards, Christina L

    2014-01-01

    Biologists have assumed that heritable variation due to DNA sequence differences (i.e., genetic variation) allows populations of organisms to be both robust and adaptable to extreme environmental conditions. Natural selection acts on the variation among different genotypes and ultimately changes the genetic composition of the population. While there is compelling evidence about the importance of genetic polymorphisms, evidence is accumulating that epigenetic mechanisms (e.g., chromatin modifications, DNA methylation) can affect ecologically important traits, even in the absence of genetic variation. In this chapter, we review this evidence and discuss the consequences of epigenetic variation in natural populations. We begin by defining the term epigenetics, providing a brief overview of various epigenetic mechanisms, and noting the potential importance of epigenetics in the study of ecology. We continue with a review of the ecological epigenetics literature to demonstrate what is currently known about the amount and distribution of epigenetic variation in natural populations. Then, we consider the various ecological contexts in which epigenetics has proven particularly insightful and discuss the potential evolutionary consequences of epigenetic variation. Finally, we conclude with suggestions for future directions of ecological epigenetics research.

  7. The causes of relapse of bacterial vaginal disease and the effects of vaginal micro ecological evaluation index on the treat-ment of bacterial vaginal disease%细菌性阴道病复发原因及阴道微生态评价指标对治疗细菌性阴道病的影响

    Institute of Scientific and Technical Information of China (English)

    徐秋平

    2016-01-01

    Objective To investigate the causes of elapse of bacterial vaginal disease(BV)and the effects of vaginal micro ecological evaluation index on the treatment of vaginal bacterial disease(BV). Methods The 170 cases diagnosed with BV through clinical symptoms,signs and the results of bacteriological examinations from January 2013 to June 2014 were selected and randomly divided into two groups according to the order of admission. Patients in the control group were treated until the symp-toms disappeared and the medicine was withdrawn until Amsel appeared normal. The patients in the observation group were trea-ted until the intensity of the vagina bacterium group reached degree Ⅱ - Ⅲ and Lactobacillus was obvious(the concentration of H2 O2 ﹥ 2 nmol/ ml),based on the therapy of the control group. After 6 months of follow - up,the recurrence rate was compared between the two groups ,the clinical data of relapsing patients were retrospectively analyzed and the reasons of recurrence of BV were summarized. Results The recurrence rate( 14. 12% ) in the observation group was significantly lower than that (55. 29% ,χ2 = 31. 799,P = 0. 000)of the control group. In 170 cases of patients with BV,59 cases showed recurrence,ac-counting for 34. 71% . The results single factor analysis suggested that age,degree of education and the history of abortion were not the risk factors of recurrence(P ﹥ 0. 05). But logistic multi factors analysis suggested that the way of underwear changed and times,times of sexual life,way of bathing and pads used in the non menstrual were the main risk factors(P ﹤ 0. 05). Multivari-ate logistic analysis showed that the underwear washed with other clothes,bathtub,the frequency of sexual life(more than 3 times per week),pads used in non menstrual were independent risk factors for recurrence of BV(P ﹤ 0. 05). But the times of underwear changed(less than 4 times per week)were the independent risk factor(P ﹥ 0. 05). Conclusion The vaginal micro

  8. Introduction: Experimental Green Strategies

    DEFF Research Database (Denmark)

    Peters, Terri

    2011-01-01

    Defining new ways in which archietcts are responding to the challenge of creating sustainable architecture , Experimental Green Strategies present a state of the art in applied ecological architectural research.......Defining new ways in which archietcts are responding to the challenge of creating sustainable architecture , Experimental Green Strategies present a state of the art in applied ecological architectural research....

  9. The gut microbiota of rural papua new guineans: composition, diversity patterns, and ecological processes.

    Science.gov (United States)

    Martínez, Inés; Stegen, James C; Maldonado-Gómez, Maria X; Eren, A Murat; Siba, Peter M; Greenhill, Andrew R; Walter, Jens

    2015-04-28

    Although recent research revealed an impact of westernization on diversity and composition of the human gut microbiota, the exact consequences on metacommunity characteristics are insufficiently understood, and the underlying ecological mechanisms have not been elucidated. Here, we have compared the fecal microbiota of adults from two non-industrialized regions in Papua New Guinea (PNG) with that of United States (US) residents. Papua New Guineans harbor communities with greater bacterial diversity, lower inter-individual variation, vastly different abundance profiles, and bacterial lineages undetectable in US residents. A quantification of the ecological processes that govern community assembly identified bacterial dispersal as the dominant process that shapes the microbiome in PNG but not in the US. These findings suggest that the microbiome alterations detected in industrialized societies might arise from modern lifestyle factors limiting bacterial dispersal, which has implications for human health and the development of strategies aimed to redress the impact of westernization. Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

  10. Information Ecology

    DEFF Research Database (Denmark)

    Christiansen, Ellen Tove

    2006-01-01

    in the 1960ties, and chosen here because it integrates cultural and psychological trajectories in a theory of living settings. The pedagogical-didactical paradigm comprises three distinct information ecologies, named after their intended outcome: the problem-setting, the exploration-setting, and the fit......The paper describes a pedagogical didactical paradigm for teaching student-designers how to deal with context issues. Form/context-relationships are conceptualized as information ecologies and described as behavioral settings using a key concept developed by social psychologist R.A. Baker......-setting. It is specified how context issues can be treated within each of these information ecologies. The paper concludes by discussing the outcome of applying this paradigm with respect to the student-designers’ competence as reflective practitioners....

  11. Bacterial mycophagy: definition and diagnosis of a unique bacterial-fungal interaction

    NARCIS (Netherlands)

    Leveau, J.H.J.; Preston, G.M.

    2008-01-01

    This review analyses the phenomenon of bacterial mycophagy, which we define as a set of phenotypic behaviours that enable bacteria to obtain nutrients from living fungi and thus allow the conversion of fungal into bacterial biomass. We recognize three types of bacterial strategies to derive

  12. Small intestinal bacterial overgrowth syndrome

    Institute of Scientific and Technical Information of China (English)

    Jan; Bures; Jiri; Cyrany; Darina; Kohoutova; Miroslav; Frstl; Stanislav; Rejchrt; Jaroslav; Kvetina; Viktor; Vorisek; Marcela; Kopacova

    2010-01-01

    Human intestinal microbiota create a complex polymi-crobial ecology. This is characterised by its high population density, wide diversity and complexity of interaction. Any dysbalance of this complex intestinal microbiome, both qualitative and quantitative, might have serious health consequence for a macro-organism, including small intestinal bacterial overgrowth syndrome (SIBO).SIBO is defined as an increase in the number and/or alteration in the type of bacteria in the upper gastro-intestinal tract. There...

  13. Surface micropattern limits bacterial contamination

    OpenAIRE

    Mann, Ethan E.; Manna, Dipankar; Mettetal, Michael R; May, Rhea M.; Dannemiller, Elisa M; Chung, Kenneth K.; Brennan, Anthony B; Reddy, Shravanthi T

    2014-01-01

    Background Bacterial surface contamination contributes to transmission of nosocomial infections. Chemical cleansers used to control surface contamination are often toxic and incorrectly implemented. Additional non-toxic strategies should be combined with regular cleanings to mitigate risks of human error and further decrease rates of nosocomial infections. The Sharklet micropattern (MP), inspired by shark skin, is an effective tool for reducing bacterial load on surfaces without toxic additiv...

  14. Interaction between resource identity and bacterial community composition regulates bacterial respiration in aquatic ecosystems

    Directory of Open Access Journals (Sweden)

    A. P. F. Pires

    Full Text Available Abstract Resource identity and composition structure bacterial community, which in turn determines the magnitude of bacterial processes and ecological services. However, the complex interaction between resource identity and bacterial community composition (BCC has been poorly understood so far. Using aquatic microcosms, we tested whether and how resource identity interacts with BCC in regulating bacterial respiration and bacterial functional diversity. Different aquatic macrophyte leachates were used as different carbon resources while BCC was manipulated through successional changes of bacterial populations in batch cultures. We observed that the same BCC treatment respired differently on each carbon resource; these resources also supported different amounts of bacterial functional diversity. There was no clear linear pattern of bacterial respiration in relation to time succession of bacterial communities in all leachates, i.e. differences on bacterial respiration between different BCC were rather idiosyncratic. Resource identity regulated the magnitude of respiration of each BCC, e.g. Ultricularia foliosa leachate sustained the greatest bacterial functional diversity and lowest rates of bacterial respiration in all BCC. We conclude that both resource identity and the BCC interact affecting the pattern and the magnitude of bacterial respiration in aquatic ecosystems.

  15. STUDY ON STRATEGIES FOR ECOLOGICAL TRANSITION OF PLANNING COMPILATION AND MANAGEMENT IN CHONGQING METROPOLIS%重庆都市区规划编制与管理生态转型策略研究

    Institute of Scientific and Technical Information of China (English)

    金伟; 张远林; 王正; 颜文涛; 闫水玉

    2012-01-01

    针对重庆都市区复杂的山地环境,在可持续发展和建设生态型城市目标的引导下,规划的编制和管理进行了生态转型:价值观念实现以可持续发展为目标,策略观念实现不同层次与尺度的全面生态化,技术观念从规划哲学基础、规划思维、环境影响、方法手段等都实施生态范式的革新.从生态空间引导、都市区功能高效组织、都市与自然共生、交通体系生态化、绿地水系生态化等方面形成技术体系生态转型,并落实到规划控制系统的组成与指标体系之中,构建了规划的管理体系生态转型,效果初步显现.%Considering the complicated mountain land form in Chongqing and guided by the goal of promoting sustainable development and constructing ecological city, an ecological transition of the planning compilation and management is conducted, with the value and concept orienting at sustainable development, the strategies for overall ecologicalization from different levels and dimensions, and a renovation on technical concepts from perspectives of planning philosophy foundations, planning thoughts, environmental influence, and methodology. Efforts are put into the ecological transition of the technical system from aspects including ecological space guidance, functional high-efficient organization in metropolis, coexistence between metropolis and nature, ecologicalization of transportation system, and ecologicalization of green land and water system, which is implemented in the composition and indexes system of the planning control system. As a result, an ecological transition of the planning management system is realized, and the effect has started to be seen.

  16. Visual ecology

    National Research Council Canada - National Science Library

    Cronin, Thomas W; Johnsen, Sönke; Marsahll, N. Justin; Warrant, Eric

    2014-01-01

    ... ecology. . Physiology, Comparative. . Eye- Evolution. I. Title. QP.C  .'- dc British Library Cataloging-in-Publication Data is available This book...

  17. Information Ecology

    DEFF Research Database (Denmark)

    Christiansen, Ellen Tove

    2006-01-01

    The paper describes a pedagogical didactical paradigm for teaching student-designers how to deal with context issues. Form/context-relationships are conceptualized as information ecologies and described as behavioral settings using a key concept developed by social psychologist R.A. Baker...

  18. A study of ecological sanitation as an integrated urban water supply system: case study of sustainable strategy for Kuching City, Sarawak, Malaysia.

    Science.gov (United States)

    Seng, Darrien Mah Yau; Putuhena, Frederik Josep; Said, Salim; Ling, Law Puong

    2009-03-01

    A city consumes a large amount of water. Urban planning and development are becoming more compelling due to the fact of growing competition for water, which has lead to an increasing and conflicting demand. As such, investments in water supply, sanitation and water resources management is a strong potential for a solid return. A pilot project of greywater ecological treatment has been established in Kuching city since 2003. Such a treatment facility opens up an opportunity of wastewater reclamation for reuse as secondary sources of water for non-consumptive purposes. This paper aims to explore the potential of the intended purposes in the newly developed ecological treatment project. By utilizing the Wallingford Software model, InfoWorks WS (Water Supply) is employed to carry out a hydraulic modeling of a hypothetical greywater recycling system as an integrated part of the Kuching urban water supply, where the greywater is treated, recycled and reused in the domestic environment. The modeling efforts have shown water savings of about 40% from the investigated system reinstating that the system presents an alternative water source worth exploring in an urban environment.

  19. Cell Shaving and False-Positive Control Strategies Coupled to Novel Statistical Tools to Profile Gram-Positive Bacterial Surface Proteomes.

    Science.gov (United States)

    Solis, Nestor; Cordwell, Stuart J

    2016-01-01

    A powerful start to the discovery and design of novel vaccines, and for better understanding of host-pathogen interactions, is to profile bacterial surfaces using the proteolytic digestion of surface-exposed proteins under mild conditions. This "cell shaving" approach has the benefit of both identifying surface proteins and their surface-exposed epitopes, which are those most likely to interact with host cells and/or the immune system, providing a comprehensive overview of bacterial cell topography. An essential requirement for successful cell shaving is to account for (or minimize) cellular lysis that can occur during the shaving procedure and thus generate data that is biased towards non-surface (e.g., cytoplasmic) proteins. This is further complicated by the presence of "moonlighting" proteins, which are proteins predicted to be intracellular but with validated surface or extracellular functions. Here, we describe an optimized cell shaving protocol for Gram-positive bacteria that uses proteolytic digestion and a "false-positive" control to reduce the number of intracellular contaminants in these datasets. Released surface-exposed peptides are analyzed by liquid chromatography (LC) coupled to high-resolution tandem mass spectrometry (MS/MS). Additionally, the probabilities of proteins being surface exposed can be further calculated by applying novel statistical tools.

  20. Effective strategy for pyramiding three bacterial blight resistance genes into fine grain rice cultivar, Samba Mahsuri, using sequence tagged site markers.

    Science.gov (United States)

    Kottapalli, Kameswara Rao; Lakshmi Narasu, M; Jena, Kshirod K

    2010-07-01

    Bacterial leaf blight (BB) of rice is a major disease limiting rice production in several rice growing regions of the world. The pathogen, Xanthomonas oryzae pv oryzae, causing the disease is highly virulent to rice crops and is capable of evolving new races. Breeding efforts to incorporate single BB resistant gene often leads to resistance breakdown within a short period. To overcome such breakdown of resistance and develop germplasm with durable disease resistance, we have introgressed three bacterial blight resistance genes, xa5, xa13, and Xa21 into a fine grain rice variety, Samba Mahsuri, using sequence tagged site (STS) markers linked to these genes. Since the efficiency of the STS markers linked to recessive genes to detect homozygotes is less than 100%, we adopted four different pyramiding schemes to minimize loss of recessive resistance genes in advanced backcross generations. Pyramiding scheme A in which a two-gene Samba Mahsuri pyramid line containing Xa21 and xa5 genes was crossed with the Samba Mahsuri line having xa13 gene alone was found to be most effective in preventing the loss of an important recessive gene xa13. We further demonstrated that there was no yield penalty due to pyramiding of multiple genes into the elite indica rice variety.

  1. The Strategy of Prevention and Treatment for Bacterial Meningitis after Craniotomy%开颅术后细菌性脑膜炎的防治策略

    Institute of Scientific and Technical Information of China (English)

    杜家钱; 朱忠民; 梁支兵; 戴立国

    2014-01-01

    目的探讨开颅手术后并发细菌性脑膜炎的危险因素和治疗措施。方法回顾性分析2008年10月~2013年10月开颅手术后发生细菌性脑膜炎患者的临床资料。结果术后细菌性脑膜炎的发生率为3.6%,年龄大于50岁、手术时间大于4H、幕下部位手术、术后引流管留置超过3d、合并脑脊液漏以及开放性颅脑损伤患者均较平均感染率明显升高(P50 year old), longer duration of operation group, and patients who underwent infratentorial craniotomy, prolonged drainage, cerebrospinofluid leakage and open craniocerebral injury ( <0.05). Conclusion The risk factors of bacterial meningitis after craniotomy include age, duration of operation and postoperative drainage, operative site, CSF leakage and open brain injury. Avoiding CSF leakage and using antibiotics based on bacterial-sensitive test as early as possible can improve curative effect.

  2. Bacterial lipases

    NARCIS (Netherlands)

    Jaeger, Karl-Erich; Ransac, Stéphane; Dijkstra, Bauke W.; Colson, Charles; Heuvel, Margreet van; Misset, Onno

    1994-01-01

    Many different bacterial species produce lipases which hydrolyze esters of glycerol with preferably long-chain fatty acids. They act at the interface generated by a hydrophobic lipid substrate in a hydrophilic aqueous medium. A characteristic property of lipases is called interfacial activation, mea

  3. Bacterial Adhesion & Blocking Bacterial Adhesion

    DEFF Research Database (Denmark)

    Vejborg, Rebecca Munk

    2008-01-01

    tract to the microbial flocs in waste water treatment facilities. Microbial biofilms may however also cause a wide range of industrial and medical problems, and have been implicated in a wide range of persistent infectious diseases, including implantassociated microbial infections. Bacterial adhesion...... is the first committing step in biofilm formation, and has therefore been intensely scrutinized. Much however, still remains elusive. Bacterial adhesion is a highly complex process, which is influenced by a variety of factors. In this thesis, a range of physico-chemical, molecular and environmental parameters......, which influence the transition from a planktonic lifestyle to a sessile lifestyle, have been studied. Protein conditioning film formation was found to influence bacterial adhesion and subsequent biofilm formation considerable, and an aqueous extract of fish muscle tissue was shown to significantly...

  4. [Bacterial vaginosis. Treatment of the relapse].

    Science.gov (United States)

    Malinova, M

    2012-01-01

    Bacterial vaginosis (BV) is a common vaginal infection in women of reproductive age. Bacterial vaginosis is an ecological disorder that ensues when normal lactobacilli are replaced by large numbers of Gardnerella vaginalis, Prevotella sp., Bacteroides sp., Mobiluncus sp. and M. hominis. Numerous studies have consistently shown that BV at 12-24 weeks are associated with increased risks of preterm birth (PTB), preterm rupture of the membranes, chorioamnionitis, fetal infection and cerebral palsy. Deficiencies in local immunity may predispose women to BV.

  5. Strategies of Path Dependence and Selection of Ecological Economy Development in Qiannan Prefecture%黔南州生态经济发展的路径依赖与选择策略

    Institute of Scientific and Technical Information of China (English)

    肖国学; 郭治友; 黄明辉; 李永波; 莫光友

    2012-01-01

    黔南布依族苗族自治州(简称黔南州)是位于贵州南部的少数民族地区.民族地区的生态经济既具有生态系统性、公共性、全球性和持续性,又具有政治性、民族性、矛盾性、阶段性和复杂性等特性,在民族地区相对封闭的经济环境中,这些特征通过民族地区不断地自我强化,逐渐形成了强烈的路径依赖.分析了黔南州发展生态经济的缘由,探讨了其发展生态经济的路径依赖的主要类型,提出超越路径依赖的策略.%Qiannan Buyi and Miao Autonomous Prefecture(abbr. Qiannan Prefecture) is a minority territory of nationality which is located in southern Guizhou. The ecological economy of the territory of nationality has characteristics of not only ecological systematicness, publicity, globalization and persistence, but also political nature, nationality, contradictoriness, periodic and complexity and so on. In such relative close economic environment in the territory of nationality, these characteristics are self-reinforced constantly to form gradually some strong path dependences. The author analyzed reasons that developed ecological economy, discussed main types of path dependence and put forward strategies of path dependence in Qiannan Prefecture.

  6. The Dilemma, Evolution and Optimization Strategies of Stadiums Ecological Management of Sustainable Development%可持续发展中体育场馆生态管理的困境、演进与优化策略

    Institute of Scientific and Technical Information of China (English)

    李峰; 吕永安; 陈梅

    2015-01-01

    With the development of Nationalwide Fitness Programs, the strengthen of fitness awareness and increase of stadiums number, the practical difficulties and constraints in the operation and management of all types stadiums are increasingly trend, how to use the ecological view to solve the stadiums management problems about open to the public, optimizing the services properties and functions targeting of stadiums. the important thing is scientific, ecological management when the stadiums open to the public. This article will analyze the plight of ecological management, evolution and optimization strategies in the sustainable development of stadiums.%随着全民健身运动的广泛开展,人们健康意识的增强和体育场馆建设数量的增加,各类场馆在运行管理过程中遇到的现实困境和制约因素也日渐展现,如何利用生态学的观点解决场馆社会开放的管理问题、优化体育场馆的产品服务属性和功能目标定位,在体育场馆向社会开放的同时进行科学的、生态化的管理,是当前亟待解决的问题。将针对可持续发展中体育场馆生态管理的困境、演进与优化策略进行分析。

  7. Design Strategies of Ecological Buildings Based on the View of Generative Theory of Deleuze's Philosophy%德勒兹哲学生成论视阈下的生态建筑设计策略

    Institute of Scientific and Technical Information of China (English)

    刘杨; 林建群

    2011-01-01

    以当代法国后结构主义哲学家吉尔.德勒兹的生成论为基础,深入分析了其中蕴涵的差异思想、深层生态学思想、共生思想。将这些思想中的图解、块茎、游牧……喻体的生成方式与建筑设计的操作手法相结合,构建了适应后工业社会生命时代发展需求的生态建筑设计策略:图解的生态建筑生成图式、块茎的生态建筑生成组式、游牧的生态建筑生成变式。研究成果阐明了德勒兹生成论影响下的生态建筑形态与功能仿生、动态协调共生、连通式自组织生成与更新的发展趋向。%On the basis of the generative theory of the contemporary French poststructuralist philosopher Gilles Deleuze,this article deeply analyzes its difference thinking,deep ecology thinking and symbiotic thinking.It combines the generation mode of the metaphorical vehicles,such as diagram and rhizome in those thoughts,with operating skills of architectural design in order to construct the design strategies of ecological buildings,which can adapt to the requirements of the post-industrial society characterized by life ages.The research products clarify the developing trends of the ecological buildings influenced by Gilles Deleuze's generative theory,which include bionic forms and functions,dynamic coordinated symbiosis,connected self-organized generation and regeneration.

  8. Ecological Adaptability of Entomopathogenic Fungi and Strategy for Biocontrol Application%昆虫病原真菌的生态适应性及其生物防治应用策略

    Institute of Scientific and Technical Information of China (English)

    农向群; 张泽华

    2013-01-01

      昆虫病原真菌被研究用于农林害虫生物防治,其田间生态适应性直接关系到防治效果和防效稳定性。为了获得良好防效,除了需要菌株具有对靶标害虫的高度致病力,还需要具有适应田间环境的生存能力。本文从昆虫病原真菌种类和分布多样性、与昆虫及植物的生态关系、田间种群动态等方面综述分析其生态适应性,希望有助于从生态学角度理解昆虫病原真菌的生物防治综合作用,并有助于根据生态种群特点制定未来的生物防治应用策略。%Entomopathogenic fungi are used as bio-insecticides to control insect pests in agricultural and forest ecosystem. Their ecological adaptability in field was directly interrelated to control efficiency and constancy. To ensure a good control result, it is required for the fungal strains with a strong ability of field survival as well as the high virulence against the target insects. This paper summarized ecological adaptability of entomopathogenic fungi including diversity of species and distribution, relationships with insects and plants, population dynamic and so on. The review paper provides better ecological understanding on entomopathogenic fungi as key biological control agents, and benefits strategy choice of biocontrol application in the future.

  9. 关于生态建筑节能策略探索与研究%Exploration and Research On the Energy-saving Strategy of Ecological Buildings

    Institute of Scientific and Technical Information of China (English)

    付建湘

    2014-01-01

    Energy- saving of building is both a major trend in the world and the popular trend and the end of the construction industry. Modern ecological architecture is usual built with high density energy-- saving technology, and directed by the concept of sustainable development. These buildings are a combination of few material, litle water and energy and environmental protection.%建筑节能作为世界性的大趋势与大潮流,也是建筑事业发展的热点与终点之一。现代生态建筑多采用高密度节能技术,并将可持续发展理念融入建筑全寿命的过程中,倡导节材、节水、节能与环境保护。

  10. Patterns of Gut Bacterial Colonization in Three Primate Species

    Science.gov (United States)

    McKenney, Erin A.; Rodrigo, Allen; Yoder, Anne D.

    2015-01-01

    Host fitness is impacted by trillions of bacteria in the gastrointestinal tract that facilitate development and are inextricably tied to life history. During development, microbial colonization primes the gut metabolism and physiology, thereby setting the stage for adult nutrition and health. However, the ecological rules governing microbial succession are poorly understood. In this study, we examined the relationship between host lineage, captive diet, and life stage and gut microbiota characteristics in three primate species (infraorder, Lemuriformes). Fecal samples were collected from captive lemur mothers and their infants, from birth to weaning. Microbial DNA was extracted and the v4 region of 16S rDNA was sequenced on the Illumina platform using protocols from the Earth Microbiome Project. Here, we show that colonization proceeds along different successional trajectories in developing infants from species with differing dietary regimes and ecological profiles: frugivorous (fruit-eating) Varecia variegata, generalist Lemur catta, and folivorous (leaf-eating) Propithecus coquereli. Our analyses reveal community membership and succession patterns consistent with previous studies of human infants, suggesting that lemurs may serve as a useful model of microbial ecology in the primate gut. Each lemur species exhibits distinct species-specific bacterial diversity signatures correlating to life stages and life history traits, implying that gut microbial community assembly primes developing infants at species-specific rates for their respective adult feeding strategies. PMID:25970595

  11. Patterns of gut bacterial colonization in three primate species.

    Directory of Open Access Journals (Sweden)

    Erin A McKenney

    Full Text Available Host fitness is impacted by trillions of bacteria in the gastrointestinal tract that facilitate development and are inextricably tied to life history. During development, microbial colonization primes the gut metabolism and physiology, thereby setting the stage for adult nutrition and health. However, the ecological rules governing microbial succession are poorly understood. In this study, we examined the relationship between host lineage, captive diet, and life stage and gut microbiota characteristics in three primate species (infraorder, Lemuriformes. Fecal samples were collected from captive lemur mothers and their infants, from birth to weaning. Microbial DNA was extracted and the v4 region of 16S rDNA was sequenced on the Illumina platform using protocols from the Earth Microbiome Project. Here, we show that colonization proceeds along different successional trajectories in developing infants from species with differing dietary regimes and ecological profiles: frugivorous (fruit-eating Varecia variegata, generalist Lemur catta, and folivorous (leaf-eating Propithecus coquereli. Our analyses reveal community membership and succession patterns consistent with previous studies of human infants, suggesting that lemurs may serve as a useful model of microbial ecology in the primate gut. Each lemur species exhibits distinct species-specific bacterial diversity signatures correlating to life stages and life history traits, implying that gut microbial community assembly primes developing infants at species-specific rates for their respective adult feeding strategies.

  12. Is Quorum Signaling by Mycotoxins a New Risk-Mitigating Strategy for Bacterial Biocontrol of Fusarium verticillioides and Other Endophytic Fungal Species?

    Science.gov (United States)

    Bacon, Charles W; Hinton, Dorothy M; Mitchell, Trevor R

    2017-08-23

    Bacterial endophytes are used as biocontrol organisms for plant pathogens such as the maize endophyte Fusarium verticillioides and its production of fumonisin mycotoxins. However, such applications are not always predictable and efficient. In this work, we hypothesize and review work that quorum sensing inhibitors are produced either by fungi or by pathogenic bacteria for competitive purposes, altering the efficiency of the biocontrol organisms. Recently, quorum sensing inhibitors have been isolated from several fungi, including Fusarium species, three of which are mycotoxins. Thus, we further postulate that other mycotoxins are inhibitors or quenching metabolites that prevent the protective abilities and activities of endophytic biocontrol bacteria within intercellular spaces. To test the aforementioned suppositions, we review work detailing the use of bioassay bacteria for several mycotoxins for quorum activity. We specifically focus on the quorum use of endophytic bacteria as biocontrols for mycotoxic fungal endophytes, such as the Fusarium species and the fumonisin mycotoxins.

  13. The Ecological Construction Strategy of New Residential in Loess Hilly-gully Region%陇中黄土丘陵沟壑区新民居生态营建策略

    Institute of Scientific and Technical Information of China (English)

    冯娟

    2014-01-01

    By analyzing the properties of loess hil y-gul y region affect the local-style dwel ing houses building natural and seismic factors, climate, economy, and the region local-s-tyle dwel ing houses building is in the process of "adaptive", from the control of architectural form, optimizing the structure, make ful use of resources to put forward ecological construct-ion strategy.%通过分析陇中黄土丘陵沟壑区影响民居建筑营造的自然、气候、经济及抗震因素,以及该地区民居建筑建造过程中的“不适应性”,从控制建筑形体、优化建筑构造、充分利用资源三个方面提出生态营建策略。

  14. Social-Ecological Guilds: Putting People into Marine Historical Ecology

    Directory of Open Access Journals (Sweden)

    Janna M. Shackeroff

    2011-03-01

    Full Text Available Marine historical ecology provides historic insights into past ocean ecosystems that are crucial to effectively confronting the declining health and resilience in marine ecosystems. A more 'peopled' approach to marine historical ecology is necessary, given the heightened emphasis on human dimensions in marine management. This study examined the historical ecology of Hawaiian coral reef ecosystems through oral histories of diverse ocean experts, representing six traditional, local, and scientific knowledge systems. Based on 61 in-depth interviews with these ocean experts, historical trends, abundance, and distribution over 80 years and a 50-mile region for 271 species emerged. Analyzing trends by ecological guild, e.g., herbivores, proved inappropriate to these data; rather, based on qualitative analyses, five distinct trends encompassing nearly all species emerged in what we term "social-ecological guilds." Ocean expert's observations of change were surprisingly consistent, regardless of their knowledge system, whereas perceptions of change varied widely. The historical picture was far broader and richer when the contributions of six knowledge systems were incorporated, compared to that of any one alone. Social-ecological guilds also matter critically from a management perspective, because understanding how experts from a multiplicity of perspectives observe, interpret, and respond to ecological change can help managers anticipate responses to management activities and perhaps to design better management strategies.

  15. Bacterial Colony Optimization

    Directory of Open Access Journals (Sweden)

    Ben Niu

    2012-01-01

    Full Text Available This paper investigates the behaviors at different developmental stages in Escherichia coli (E. coli lifecycle and developing a new biologically inspired optimization algorithm named bacterial colony optimization (BCO. BCO is based on a lifecycle model that simulates some typical behaviors of E. coli bacteria during their whole lifecycle, including chemotaxis, communication, elimination, reproduction, and migration. A newly created chemotaxis strategy combined with communication mechanism is developed to simplify the bacterial optimization, which is spread over the whole optimization process. However, the other behaviors such as elimination, reproduction, and migration are implemented only when the given conditions are satisfied. Two types of interactive communication schemas: individuals exchange schema and group exchange schema are designed to improve the optimization efficiency. In the simulation studies, a set of 12 benchmark functions belonging to three classes (unimodal, multimodal, and rotated problems are performed, and the performances of the proposed algorithms are compared with five recent evolutionary algorithms to demonstrate the superiority of BCO.

  16. Bacterial assays for recombinagens.

    Science.gov (United States)

    Hoffmann, G R

    1992-12-01

    Two principal strategies have been used for studying recombinagenic effects of chemicals and radiation in bacteria: (1) measurement of homologous recombination involving defined alleles in a partially diploid strain, and (2) measurement of the formation and loss of genetic duplications in the bacterial chromosome. In the former category, most methods involve one allele in the bacterial chromosome and another in a plasmid, but it is also possible to detect recombination between two chromosomal alleles or between two extrachromosomal alleles. This review summarizes methods that use each of these approaches for detecting recombination and tabulates data on agents that have been found to be recombinagenic in bacteria. The assays are discussed with respect to their effectiveness in testing for recombinagens and their potential for elucidating mechanisms underlying recombinagenic effects.

  17. [Bacterial vaginosis].

    Science.gov (United States)

    Romero Herrero, Daniel; Andreu Domingo, Antonia

    2016-07-01

    Bacterial vaginosis (BV) is the main cause of vaginal dysbacteriosis in the women during the reproductive age. It is an entity in which many studies have focused for years and which is still open for discussion topics. This is due to the diversity of microorganisms that cause it and therefore, its difficult treatment. Bacterial vaginosis is probably the result of vaginal colonization by complex bacterial communities, many of them non-cultivable and with interdependent metabolism where anaerobic populations most likely play an important role in its pathogenesis. The main symptoms are an increase of vaginal discharge and the unpleasant smell of it. It can lead to serious consequences for women, such as an increased risk of contracting sexually transmitted infections including human immunodeficiency virus and upper genital tract and pregnancy complications. Gram stain is the gold standard for microbiological diagnosis of BV, but can also be diagnosed using the Amsel clinical criteria. It should not be considered a sexually transmitted disease but it is highly related to sex. Recurrence is the main problem of medical treatment. Apart from BV, there are other dysbacteriosis less characterized like aerobic vaginitis of which further studies are coming slowly but are achieving more attention and consensus among specialists.

  18. Environmental strategy

    DEFF Research Database (Denmark)

    Zabkar, Vesna; Cater, Tomaz; Bajde, Domen

    2013-01-01

    Environmental issues and the inclusion of environmental strategies in strategic thinking is an interesting subject of investigation. In general, managerial practices organized along ecologically sound principles contribute to a more environmentally sustainable global economy. From the managerial...... perspective, appropriate environmental strategies in compliance with environmental requirements aim at building competitive advantages through sustainable development. There is no universal “green” strategy that would be appropriate for each company, regardless of its market requirements and competitive...... situations. Instead, managers undertake careful consideration of the circumstances in which their company operates, paying special attention to their customers’ environmental preferences....

  19. ECOLOGICAL ECONOMICS VS ECONOMIC(AL ECOLOGY

    Directory of Open Access Journals (Sweden)

    G. Kharlamova

    2015-10-01

    Full Text Available Currently world faces the dilemma – ecological economy or economic(al ecology. The researchers produce hundreds of surveys on the topic. However the analyses of recent most cited simulations had shown the diversity of results. Thus, for some states the Kuznets environmental curve has place, for others – no. Same could be said about different years for the same state. It provokes the necessity of drawing new group analyses to reveal the tendencies and relationships between economic and environmental factors. Most flexible and mirror factor of environmental sustainability is the volume of CO2 emissions. The econometric analysis was used for detecting the economic impact on this indicator at the global level and in the spectra of group of states depending on their income. The hypothesis of the existence of environmental Kuznets curve for the analysed data is rejected. Real GDP per capita impact on carbon dioxide emissions is considered only at the global level. The impact of openness of the economy is weak. Rejection happened also to the hypothesis that for the developed countries there is a reverse dependence between the environmental pollution and economic openness. Indicator “energy consumption per capita” impacts on greenhouse gas emissions only in countries with high income. Whereby it should be noted that the more developed a country is, the more elastic is this influence. These results have a potential usage for environmental policy regulation and climate strategy.

  20. Principles for ecologically based invasive plant management

    Science.gov (United States)

    Jeremy J. James; Brenda S. Smith; Edward A. Vasquez; Roger L. Sheley

    2010-01-01

    Land managers have long identified a critical need for a practical and effective framework for designing restoration strategies, especially where invasive plants dominate. A holistic, ecologically based, invasive plant management (EBIPM) framework that integrates ecosystem health assessment, knowledge of ecological processes, and adaptive management into a successional...

  1. Metagenomic profile of the bacterial communities associated with Ixodes ricinus ticks.

    Directory of Open Access Journals (Sweden)

    Giovanna Carpi

    Full Text Available Assessment of the microbial diversity residing in arthropod vectors of medical importance is crucial for monitoring endemic infections, for surveillance of newly emerging zoonotic pathogens, and for unraveling the associated bacteria within its host. The tick Ixodes ricinus is recognized as the primary European vector of disease-causing bacteria in humans. Despite I. ricinus being of great public health relevance, its microbial communities remain largely unexplored to date. Here we evaluate the pathogen-load and the microbiome in single adult I. ricinus by using 454- and Illumina-based metagenomic approaches. Genomic DNA-derived sequences were taxonomically profiled using a computational approach based on the BWA algorithm, allowing for the identification of known tick-borne pathogens at the strain level and the putative tick core microbiome. Additionally, we assessed and compared the bacterial taxonomic profile in nymphal and adult I. ricinus pools collected from two distinct geographic regions in Northern Italy by means of V6-16S rRNA amplicon pyrosequencing and community based ecological analysis. A total of 108 genera belonging to representatives of all bacterial phyla were detected and a rapid qualitative assessment for pathogenic bacteria, such as Borrelia, Rickettsia and Candidatus Neoehrlichia, and for other bacteria with mutualistic relationship or undetermined function, such as Wolbachia and Rickettsiella, was possible. Interestingly, the ecological analysis revealed that the bacterial community structure differed between the examined geographic regions and tick life stages. This finding suggests that the environmental context (abiotic and biotic factors and host-selection behaviors affect their microbiome.Our data provide the most complete picture to date of the bacterial communities present within I. ricinus under natural conditions by using high-throughput sequencing technologies. This study further demonstrates a novel detection

  2. European ecological networks and greenways

    NARCIS (Netherlands)

    Jongman, R.H.G.; Külvik, M.; Kristiansen, I.

    2004-01-01

    In the context of European integration, networks are becoming increasingly important in both social and ecological sense. Since the beginning of the 1990s, societal and scientific exchanges are being restructured as the conceptual approaches towards new nature conservation strategies have been renew

  3. European ecological networks and greenways

    DEFF Research Database (Denmark)

    Kristiansen, Ib; Jongman, Rob H.G.; Kulvik, Mart

    2004-01-01

    In the context of European integration, networks are becoming increasingly important in both social and ecological sense. Since the beginning of the 1990s, societal and scientific exchanges are being restructured as the conceptual approaches towards new nature conservation strategies have been re...

  4. On Science, Ecology and Environmentalism

    Science.gov (United States)

    Tulloch, Lynley

    2013-01-01

    Using ecological science as a backdrop for this discussion, the author applies Michel Foucault's historical genealogical strategy to an analysis of the processes through which sustainable development (SD) gained hegemonic acceptance in the West. She analyses some of the ideological mutations that have seen SD emerge from an environmentalist…

  5. On Science, Ecology and Environmentalism

    Science.gov (United States)

    Tulloch, Lynley

    2013-01-01

    Using ecological science as a backdrop for this discussion, the author applies Michel Foucault's historical genealogical strategy to an analysis of the processes through which sustainable development (SD) gained hegemonic acceptance in the West. She analyses some of the ideological mutations that have seen SD emerge from an environmentalist…

  6. Ecological macroeconomics

    DEFF Research Database (Denmark)

    Røpke, Inge

    2013-01-01

    on how to reconcile environmental and social concerns. Based on this broad variety of pieces in a jigsaw puzzle, a new ecological macroeconomics is emerging, but the contours are still vague. This chapter seeks to outline some of this topography and to add a few pieces of its own by highlighting the need......The economic decline that began in 2008 opened a window of opportunity for consideration about how to combine macroecononomic and environmental concerns. This discussion is far from new, as evidenced, for instance, by the European Commission’s White Paper from 1993, which explained how a greening...

  7. Graphic Ecologies

    Directory of Open Access Journals (Sweden)

    Brook Weld Muller

    2014-12-01

    Full Text Available This essay describes strategic approaches to graphic representation associated with critical environmental engagement and that build from the idea of works of architecture as stitches in the ecological fabric of the city. It focuses on the building up of partial or fragmented graphics in order to describe inclusive, open-ended possibilities for making architecture that marry rich experience and responsive performance. An aphoristic approach to crafting drawings involves complex layering, conscious absence and the embracing of tension. A self-critical attitude toward the generation of imagery characterized by the notion of ‘loose precision’ may lead to more transformative and environmentally responsive architectures.

  8. Ecological improvement and sustainable development in Xinjiang

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    @@ In light of an S&T cooperation agreement between the Xinjiang Uygur Autonomous Region and CAS signed on August 2005, the CAS Academic Divisions started in 2006 a research project on ecological improvement and sustainable development strategy in Xinjiang.

  9. Ecological intensification of agriculture - sustainable by nature

    NARCIS (Netherlands)

    Tittonell, P.A.

    2014-01-01

    Strategies towards agricultural intensification differ on the definitions of sustainability and the variables included in its evaluation. Different notions of the qualifiers of intensification (ecological, sustainable, durable, etc.) need to be unpacked. This paper examines conceptual differences

  10. Prospects for using combined engineered bacterial enzymes and plant systems to rhizoremediate polychlorinated biphenyls.

    Science.gov (United States)

    Sylvestre, Michel

    2013-03-01

    The fate of polychlorinated biphenyls (PCBs) in soil is driven by a combination of interacting biological processes. Several investigations have brought evidence that the rhizosphere provides a remarkable ecological niche to enhance the PCB degradation process by rhizobacteria. The bacterial oxidative enzymes involved in PCB degradation have been investigated extensively and novel engineered enzymes exhibiting enhanced catalytic activities toward more persistent PCBs have been described. Furthermore, recent studies suggest that approaches involving processes based on plant-microbe associations are very promising to remediate PCB-contaminated sites. In this review emphasis will be placed on the current state of knowledge regarding the strategies that are proposed to engineer the enzymes of the PCB-degrading bacterial oxidative pathway and to design PCB-degrading plant-microbe systems to remediate PCB-contaminated soil.

  11. 湖南省政府英文网站建设的生态现状及优化策略%Present Ecological Situation of Hunan Official English Website Construction And its Improvement Strategies

    Institute of Scientific and Technical Information of China (English)

    蒋学军; 刘明东

    2012-01-01

      基于当前湖南省政府门户英文网站的生态现状,重点剖析湖南省人民政府和长沙市、衡阳市政府英文网站的栏目设计情况,探讨政府英文网站翻译的归化和异化策略,分析湖南省各级政府英文网站建设所存在的问题,并提出湖南省政府英文网站建设生态的优化策略。%  This paper introduces the general construction situation of English websites of the governments in Hu-nan Province, mainly analyzes the column setting of the government’s official English websites of Hunan Province, Changsha City and Hengyang City, probes into the domestication and foreignization translation strategies for the gov-ernment’s official English websites, points out the problems existing in the construction of the government’s official English websites at different levels, and puts forward the improvement strategies for the construction ecology of the government’s official English website.

  12. Ecological carbon sequestration via wood harvest and storage (WHS): Can it be a viable climate mitigation and adaptation strategy for the Amazon?

    Science.gov (United States)

    Zeng, N.

    2015-12-01

    A carbon sequestration strategy is proposed in which forests are sustainably managed to optimal carbon productivity, and a fraction of the wood is selectively harvested and stored to prevent decomposition under anaerobic, dry or cold conditions. Because a large flux of CO2 is constantly assimilated into the world's forests via photosynthesis, cutting off its return pathway to the atmosphere forms an effective carbon sink. The live trees serve as a 'carbon scrubber' or 'carbon remover' that provides continuous sequestration (negative emissions). The stored wood is a semi-permanent carbon sink, but also serves as a 'biomass/bioenergy reserve' that could be utilized in the future. We discuss the particular relevance of this strategy to the Amazon which is under the double threat of climate change and deforestation. As an alternative to REDD, we propose mixed-use of peripheral Amazon basin while keeping the core of the Amazon intact. We argue that this may be a more practical solution in light of the likely climate change impact and human activities.

  13. Neglected bacterial zoonoses.

    Science.gov (United States)

    Chikeka, I; Dumler, J S

    2015-05-01

    Bacterial zoonoses comprise a group of diseases in humans or animals acquired by direct contact with or by oral consumption of contaminated animal materials, or via arthropod vectors. Among neglected infections, bacterial zoonoses are among the most neglected given emerging data on incidence and prevalence as causes of acute febrile illness, even in areas where recognized neglected tropical diseases occur frequently. Although many other bacterial infections could also be considered in this neglected category, five distinct infections stand out because they are globally distributed, are acute febrile diseases, have high rates of morbidity and case fatality, and are reported as commonly as malaria, typhoid or dengue virus infections in carefully designed studies in which broad-spectrum diagnoses are actively sought. This review will focus attention on leptospirosis, relapsing fever borreliosis and rickettsioses, including scrub typhus, murine typhus and spotted fever group rickettsiosis. Of greatest interest is the lack of distinguishing clinical features among these infections when in humans, which confounds diagnosis where laboratory confirmation is lacking, and in regions where clinical diagnosis is often attributed to one of several perceived more common threats. As diseases such as malaria come under improved control, the real impact of these common and under-recognized infections will become evident, as will the requirement for the strategies and allocation of resources for their control.

  14. Adaptive Bacterial Foraging Optimization

    Directory of Open Access Journals (Sweden)

    Hanning Chen

    2011-01-01

    Full Text Available Bacterial Foraging Optimization (BFO is a recently developed nature-inspired optimization algorithm, which is based on the foraging behavior of E. coli bacteria. Up to now, BFO has been applied successfully to some engineering problems due to its simplicity and ease of implementation. However, BFO possesses a poor convergence behavior over complex optimization problems as compared to other nature-inspired optimization techniques. This paper first analyzes how the run-length unit parameter of BFO controls the exploration of the whole search space and the exploitation of the promising areas. Then it presents a variation on the original BFO, called the adaptive bacterial foraging optimization (ABFO, employing the adaptive foraging strategies to improve the performance of the original BFO. This improvement is achieved by enabling the bacterial foraging algorithm to adjust the run-length unit parameter dynamically during algorithm execution in order to balance the exploration/exploitation tradeoff. The experiments compare the performance of two versions of ABFO with the original BFO, the standard particle swarm optimization (PSO and a real-coded genetic algorithm (GA on four widely-used benchmark functions. The proposed ABFO shows a marked improvement in performance over the original BFO and appears to be comparable with the PSO and GA.

  15. Bacterial Adhesion & Blocking Bacterial Adhesion

    DEFF Research Database (Denmark)

    Vejborg, Rebecca Munk

    2008-01-01

    tract to the microbial flocs in waste water treatment facilities. Microbial biofilms may however also cause a wide range of industrial and medical problems, and have been implicated in a wide range of persistent infectious diseases, including implantassociated microbial infections. Bacterial adhesion...... in the formation of highly complex sessile communities, referred to as biofilms. Such microbial communities are often highly dynamic and heterogeneous in nature. Microbial biofilms are of great importance in a wide range of natural processes and industrial settings, from the commensal flora of the gastrointestinal...

  16. Regional Variation in Non-Timber Forest Product Harvest Strategies, Trade, and Ecological Impacts: the Case of Black Dammar (Canarium strictum Roxb. Use and Conservation in the Nilgiri Biosphere Reserve, India

    Directory of Open Access Journals (Sweden)

    Anita Varghese

    2008-12-01

    Full Text Available Millions of people worldwide depend on the harvest of non-timber forest products (NTFP for their livelihoods, and the importance of understanding the complex relationships between NTFP harvest and conservation is increasingly recognized. This study employs a cross-disciplinary, regional approach to identify some of the links between patterns of harvest, trade, and conservation of one of South India's most heavily harvested resins, Canarium strictum Roxb. (Burseraceae, or black dammar. We focus on indigenous communities in the Nilgiri Biosphere Reserve (NBR and ask: How is C. strictum tapped and is there variation across communities? How is C. strictum resin sold and bought, and what trade routes are involved? What are the impacts of tapping on C. strictum trees and population structure? We carried out interviews and focus-group discussions with harvesters in eight villages in three different regions, and with buyers and traders inside and outside of the NBR. We also established twenty-two 20 x 20 m plots to document population structure. Three broad resin-harvest strategies were identified: collection from natural fissures, tapping using incisions, and tapping using incisions and fire, each practiced in a different region. However, within each strategy there was large variation in tapping frequency and timing, tenure practices, and resin quality. The loss of tree tenure in some areas has led to a higher frequency of tapping and to the production of lower quality, lower value resin. Factors driving changes in both tenure and tapping strategies include rising commercial demand and value, pressure from outside harvesters, changes in livelihood strategies, and habitat destruction. Tapping leads to elevated mortality of C. strictum adults, with fire-tapping have a greater negative impact than tapping with no fire. The combination of social and ecological approaches used here provides insight on strategies for better conservation of C. strictum. These

  17. To Do Big City:On the First Strategy of Ecological Civilization Construction---Taking Wuhan Ecological Civilization Construction for Example%做大城市:论生态文明建设的首位战略--以武汉市生态文明建设为例

    Institute of Scientific and Technical Information of China (English)

    杨卫东

    2014-01-01

    Urban development and construction of ecological civilization is not entirely antagonistic, but complementary.City is a good area to promote the construction of ecological civilization.For those ar-eas with obvious geographical advantages,with a strong regional environmental carrying capacity,to do bigger,better cities should be regarded as the first strategy of ecological civilization construction.To do Big Wuhan,we must adjust the established land space planning,change the existing restrictive provi-sions,highlighting the characteristics of ultra-mega-cities,plan the layout around the requirements of na-tional central cities.Our long-term development strategy of that to restrict big cities is very unfavorable to China’s economic development.Big cities are not positively correlated to “urban disease”.As long as we can really transform the economic development mode,to accelerate industrial upgrading,to thaw the large-scale growth of urban population with good industrial structure,to really solve the household con-trol,to realistically plan different urban development,may we cure China’s urban disease,so that the ecological civilization construction may be implemented.%城市发展与生态文明建设并不完全对立,而是相辅相成的,城市是促进生态文明建设的上佳区域。对区位优势明显、环境承载力强的地区,应把做大、做好城市作为生态文明建设的首位战略。做大武汉必须调整既定的国土空间规划,改变现有的限制性规定,突出超特大城市特点,围绕国家中心城市的要求布局。我国长期奉行的限制大城市发展战略对中国经济的发展是十分不利的。大城市与“城市病”没有正相关关系,只要我们能真正转变经济发展模式,加快产业升级,以良好的产业结构来统摄城市人口的规模化增长,同时真正解决户籍管制问题,实事求是地制定不同地区的城市发展规划,我们就有可

  18. Bacterial hydrodynamics

    CERN Document Server

    Lauga, Eric

    2015-01-01

    Bacteria predate plants and animals by billions of years. Today, they are the world's smallest cells yet they represent the bulk of the world's biomass, and the main reservoir of nutrients for higher organisms. Most bacteria can move on their own, and the majority of motile bacteria are able to swim in viscous fluids using slender helical appendages called flagella. Low-Reynolds-number hydrodynamics is at the heart of the ability of flagella to generate propulsion at the micron scale. In fact, fluid dynamic forces impact many aspects of bacteriology, ranging from the ability of cells to reorient and search their surroundings to their interactions within mechanically and chemically-complex environments. Using hydrodynamics as an organizing framework, we review the biomechanics of bacterial motility and look ahead to future challenges.

  19. The microbial ecology of permafrost

    DEFF Research Database (Denmark)

    Jansson, Janet; Tas, Neslihan

    2014-01-01

    Permafrost constitutes a major portion of the terrestrial cryosphere of the Earth and is a unique ecological niche for cold-adapted microorganisms. There is a relatively high microbial diversity in permafrost, although there is some variation in community composition across different permafrost......-gas emissions. This Review describes new data on the microbial ecology of permafrost and provides a platform for understanding microbial life strategies in frozen soil as well as the impact of climate change on permafrost microorganisms and their functional roles....

  20. Coastal adaptation with ecological engineering

    Science.gov (United States)

    Cheong, So-Min; Silliman, Brian; Wong, Poh Poh; van Wesenbeeck, Bregje; Kim, Choong-Ki; Guannel, Greg

    2013-09-01

    The use of combined approaches to coastal adaptation in lieu of a single strategy, such as sea-wall construction, allows for better preparation for a highly uncertain and dynamic coastal environment. Although general principles such as mainstreaming and no- or low-regret options exist to guide coastal adaptation and provide the framework in which combined approaches operate, few have examined the interactions, synergistic effects and benefits of combined approaches to adaptation. This Perspective provides three examples of ecological engineering -- marshes, mangroves and oyster reefs -- and illustrates how the combination of ecology and engineering works.

  1. [Dynamic changes of ecological footprint and ecological capacity in Fujian Province].

    Science.gov (United States)

    Weng, Boqi; Wang, Yixiang; Huang, Yibin; Ying, Zhaoyang; Huang, Qinlou

    2006-11-01

    The analysis on the dynamic changes of ecological footprint and ecological capacity in Fujian Province showed that in 1999-2003, the ecological footprint per capita in the Province increased from 1.428 hm2 to 1.658 hm2, while the ecological capacity per capita decreased from 0.683 hm2 to 0.607 hm2, with an increased ecological deficit year after year. The contradiction between the ecological footprint and ecological capacity pricked up gradually, and the ecological environment was at risk. There existed a severe imbalance in the supply and demand of ecological footprint per capita. The main body of the demands was grassland and fossil fuel, accouting for 55.74% - 63.43% of the total, while their supply only occupied 0.77% - 0.82% and next to nothing of the ecological capacity per capita, respectively. As a whole, the ecological footprint per ten thousand yuan GDP declined in the five years, indicating that the resources use efficiency in the Province was improved gradually. Based on the analysis of the present situation of the economic development and resources distribution in the Province, the strategies on reducing ecological deficit were put forward.

  2. Biotechnology and industrial ecology: new challenges for a ...

    African Journals Online (AJOL)

    Biotechnology and industrial ecology: new challenges for a changing global ... This strategy has several co-benefits for human health and the environment because ... The strategy has limited likelihood for success if “run-away” climate change ...

  3. 北极生态安全对中国国家安全的影响及应对策略%The Arctic ecological security impact on national security of China and strategy

    Institute of Scientific and Technical Information of China (English)

    杨振姣; 崔俊; 韩硕洋; 郭培清; 范洪颖

    2013-01-01

    随着全球气候变暖,北极冰盖正加速融化,北极环境正在酝酿重大变化.北极航道会在不远的将来开通,北极会成为全球新的战略竞技场,环北极国家对北极主权和资源的竞争加剧,全球生态安全面临着重大挑战.北极环境变化对中国国家安全产生的影响是复杂的:北极冰盖融化将使中国生态安全面临着危机;能源的发现为中国提供了机遇;北极航道的开通将使中国的国际航运和国际贸易从中受益.本文在综合分析北极气候变化的基础上,进一步探讨北极生态安全与中国国家安全的关系,并分析了北极生态安全对中国国家安全的影响、原因以及中国的应对策略.这对于我国应对北极环境政治,维护中国国家安全和塑造北极地区整体安全环境有着重要的现实意义和影响.%With global warming,the Arctic ice sheet is accelerated melting,and the Arctic environment is brewing a major change.Arctic waterway will be opened in the near future,the Arctic will become one of the new global strategic arena,Circumpolar nations increased competition on the Arctic sovereignty and resources,global ecological security will face significant challenges.The impact of Arctic environmental change on China's national security is complex:Melting of the Arctic ice cap will enable China ecological security to face a crisis;Arctic energy found provide opportunities for China;What's more,China's international shipping and trade will benefit from the opening of the Arctic waterway.Based on the comprehensive analysis of the Arctic climate change,further explore the relationship between the Arctic ecological security and national security,and to analyse the Arctic ecological security impact on national security of China,accompany with its causes and coping strategies.There is a realistic significance to deal with the Arctic environmental politics,safeguard China's national security and created the Arctic overall

  4. Wordsworthian Ecology

    Institute of Scientific and Technical Information of China (English)

    朱文宣

    2014-01-01

    Wordsworth devoted himself to the ideal of a harmonious relation between human and nature, between man and soci-ety, between man and the ego. In this sense, Wordsworth improved the development of ecology. This argument will be support-ed by the approach of eco-criticism and Heidegger’s eco-philosophy. And it is supported by the following points.The first part points out that Wordsworth’s love of nature led to his love of man, which was reflected by his care for common people. Part Two shows Wordsworth’s solicitude for dwelling. His notion of dwelling had aspect of poetic dwelling. The harmonious hu-man-nature relationship reveals thee essence of free dwelling. His poetic experiment agreed with Heidegger ’s argument on poet-ic creation. His discussion of free labour was like Heidegger’s interpretation of“merit”. Part Three tells about Wordsworth’s great effort to amend the alienated human nature by treasuring the Child’s nature, imagination and human feelings.In this way, the conclusion can be got:although it would be a huge project to reinterpret Wordsworth with the approaches of eco-criticism and Heidegger’s eco-philosophy, it is still worth making the effort.

  5. Sound Ecologies

    Directory of Open Access Journals (Sweden)

    Michelle Duffy

    2010-02-01

    Full Text Available Discussions about what constitutes ‘the rural’ invariably focus on notions of spatial location – of inhabiting spaces apart from that of the metropolitan. Deeply embedded in our images of what it means to be Australian, nonetheless our intellectual framing of ‘the rural’ as something outback and beyond has significant implications for our relations with these spaces. The relatively recent phenomenon of sea- and tree-changes has struck many unawares, and not simply because a good latté is so hard to find. Although a frivolous remark, such an apparent lack does shift our focus to a bodily scale of the rural; how is rural place re/made through our experiences of it? This article originates out of on-going research that explores the practice of listening and sound and the ways in which the body can draw attention to the intuitive, emotional, and psychoanalytical processes of subjectivity and place-making. Drawing on Nigel Thrift’s concept of an ecology of place, I suggest that contemporary heightened concerns with regards to loss and lack in rural Australia has led to a nascent emotional economy – one in which individual and intimate connections to the rural require a rethinking of how we live community and belonging. In such a terrain, what does it mean to be rural?

  6. Sound ecologies

    Directory of Open Access Journals (Sweden)

    Duffy, Michelle

    2010-01-01

    Full Text Available Discussions about what constitutes ‘the rural’ invariably focus on notions of spatial location – of inhabiting spaces apart from that of the metropolitan. Deeply embedded in our images of what it means to be Australian, nonetheless our intellectual framing of ‘the rural’ as something outback and beyond has significant implications for our relations with these spaces. The relatively recent phenomenon of sea- and tree-changes has struck many unawares, and not simply because a good latté is so hard to find. Although a frivolous remark, such an apparent lack does shift our focus to a bodily scale of the rural; how is rural place re/made through our experiences of it? This article originates out of on-going research that explores the practice of listening and sound and the ways in which the body can draw attention to the intuitive, emotional, and psychoanalytical processes of subjectivity and place-making. Drawing on Nigel Thrift’s concept of an ecology of place, I suggest that contemporary heightened concerns with regards to loss and lack in rural Australia has led to a nascent emotional economy – one in which individual and intimate connections to the rural require a rethinking of how we live community and belonging. In such a terrain, what does it mean to be rural?

  7. Sound Ecologies

    Directory of Open Access Journals (Sweden)

    Michelle Duffy

    2010-02-01

    Full Text Available Discussions about what constitutes ‘the rural’ invariably focus on notions of spatial location – of inhabiting spaces apart from that of the metropolitan. Deeply embedded in our images of what it means to be Australian, nonetheless our intellectual framing of ‘the rural’ as something outback and beyond has significant implications for our relations with these spaces. The relatively recent phenomenon of sea- and tree-changes has struck many unawares, and not simply because a good latté is so hard to find. Although a frivolous remark, such an apparent lack does shift our focus to a bodily scale of the rural; how is rural place re/made through our experiences of it? This article originates out of on-going research that explores the practice of listening and sound and the ways in which the body can draw attention to the intuitive, emotional, and psychoanalytical processes of subjectivity and place-making. Drawing on Nigel Thrift’s concept of an ecology of place, I suggest that contemporary heightened concerns with regards to loss and lack in rural Australia has led to a nascent emotional economy – one in which individual and intimate connections to the rural require a rethinking of how we live community and belonging. In such a terrain, what does it mean to be rural?

  8. Pregnancy Complications: Bacterial Vaginosis

    Science.gov (United States)

    ... Complications & Loss > Pregnancy complications > Bacterial vaginosis and pregnancy Bacterial vaginosis and pregnancy E-mail to a friend Please ... this page It's been added to your dashboard . Bacterial vaginosis (also called BV or vaginitis) is an infection ...

  9. Pregnancy Complications: Bacterial Vaginosis

    Science.gov (United States)

    ... Loss > Pregnancy complications > Bacterial vaginosis and pregnancy Bacterial vaginosis and pregnancy E-mail to a friend Please ... page It's been added to your dashboard . Bacterial vaginosis (also called BV or vaginitis) is an infection ...

  10. Bacterial vaginosis -- aftercare

    Science.gov (United States)

    ... page: //medlineplus.gov/ency/patientinstructions/000687.htm Bacterial vaginosis - aftercare To use the sharing features on this ... back after you use the bathroom. Preventing Bacterial Vaginosis You can help prevent bacterial vaginosis by: Not ...

  11. Bacterial pericarditis (image)

    Science.gov (United States)

    Bacterial pericarditis is an inflammation of the pericardium, the sac-like covering of the heart, caused by a bacterial infection. The bacterial infection causes inflammation and swelling of the pericardium. Pain ...

  12. The Effect of Corporate Ecological Environment on Employee's Job Burnout and the Coping Strategies%企业生态环境对员工工作倦怠的影响及应对策略

    Institute of Scientific and Technical Information of China (English)

    李华; 黄敏

    2011-01-01

    It is demonstrated that most of the employees will disengage from their works nowadays. The concept of corporate ecological environment is defined, and its effect on employee's job burnout is analyzed through two perspectives of soft environment and tangible infrastructure. What's more, coping strategies are proposed to deal with the job burnout, so as to improve the performances both for individual employee and overall organization.%有关研究表明当今企业中的绝大多数员工在职场中会产生工作倦怠,在界定企业生态环境内涵的基础上,从软环境与硬环境两个视角具体分析企业生态环境对组织员工工作倦怠的具体影响,进一步提出消除或缓解员工工作倦怠的应对策略,从而提升员工个体乃至组织的整体工作绩效.

  13. 天冬氨酸家族主要氨基酸高产菌株的选育策略%Metabolic Engineering Strategies of Bacterial Strains for Overproduction of L-Threonine and L-Lysine

    Institute of Scientific and Technical Information of China (English)

    吴瑶瑶; 裘娟萍

    2012-01-01

    L-Threonine and L-lysine, two of the L-aspartate family amino acids (AFAAs) , have attracted great attention because of their wide application in industries of food, animal feeding and cosmetics. Metabolic engineering of bacterial strains significantly improved the production of L-threonine and L-lysine. Here, biosynthetic pathways and regulations of L-threonine and L-lysine are summarized. The strategies of metabolic engineering for the development of L-threonine and L-lysine overproducers are also discussed.%L-苏氨酸与L-赖氨酸是L-天冬氨酸家族氨基酸(AFAAs)中的重要成员,近年来由于其在食品、化妆晶、动物饲料添加剂等方面的广泛应用而备受关注,市场需求逐年上升.运用代谢工程手段构建高产菌,可有效地提高L-苏氨酸和L-赖氨酸的生产水平.本文详述了 L-苏氨酸与L-赖氨酸的合成途径、调控机制以及两种氨基酸高产菌株的构建策略.

  14. Ecological periodic tables for bentkhic macrofauna and nekton usage in estuarine habitats

    Science.gov (United States)

    In his presidential address to the British Ecological Society, T.R.E. Southwood (1977: Habitat, the templet for ecological strategies? Journal of Animal Ecology 46: 337-365; http://www.jstor.org/stable/3817) compared the situation in ecology to that in chemistry before the devel...

  15. Ecological periodic tables for bentkhic macrofauna and nekton usage in estuarine habitats

    Science.gov (United States)

    In his presidential address to the British Ecological Society, T.R.E. Southwood (1977: Habitat, the templet for ecological strategies? Journal of Animal Ecology 46: 337-365; http://www.jstor.org/stable/3817) compared the situation in ecology to that in chemistry before the devel...

  16. Horizontal gene transfer and bacterial diversity

    Indian Academy of Sciences (India)

    Chitra Dutta; Archana Pan

    2002-02-01

    Bacterial genomes are extremely dynamic and mosaic in nature. A substantial amount of genetic information is inserted into or deleted from such genomes through the process of horizontal transfer. Through the introduction of novel physiological traits from distantly related organisms, horizontal gene transfer often causes drastic changes in the ecological and pathogenic character of bacterial species and thereby promotes microbial diversification and speciation. This review discusses how the recent influx of complete chromosomal sequences of various microorganisms has allowed for a quantitative assessment of the scope, rate and impact of horizontally transmitted information on microbial evolution.

  17. Bacterial canker resistance in tomato

    OpenAIRE

    Sen, Y.

    2014-01-01

    Clavibacter michiganensis subsp. michiganensis (Cmm) is the pathogen causing bacterial  canker in tomato. The disease was described for the first time in 1910 in Michigan, USA. Cmmis considered the most harmful bacteria threatening tomato. Disease transmission occurs via seed and symptoms become visible at least 20 days after infection. Due to its complex strategy and transmission, Cmm is under quarantine regulation in EU and other countries. There is no method to stop disease progress i...

  18. Associations between ectomycorrhizal fungi and bacterial needle endophytes in Pinus radiata: implications for biotic selection of microbial communities

    Directory of Open Access Journals (Sweden)

    Megan Arlene Rúa

    2016-03-01

    Full Text Available Studies of the ecological and evolutionary relationships between plants and their associated microbes have long been focused on single microbes, or single microbial guilds, but in reality, plants associate with a diverse array of microbes from a varied set of guilds. As such, multitrophic interactions among plant-associated microbes from multiple guilds represent an area of developing research, and can reveal how complex microbial communities are structured around plants. Interactions between coniferous plants and their associated microbes provide a good model system for such studies, as conifers host a suite of microorganisms including mutualistic ectomycorrhizal (ECM fungi and foliar bacterial endophytes. To investigate the potential role ECM fungi play in structuring foliar bacterial endophyte communities, we sampled three isolated, native populations of Monterey pine (Pinus radiata, and used constrained analysis of principal coordinates to relate the community matrices of the ECM fungi and bacterial endophytes. Our results suggest that ECM fungi may be important factors for explaining variation in bacterial endophyte communities but this effect is influenced by population and environmental characteristics, emphasizing the potential importance of other factors — biotic or abiotic — in determining the composition of bacterial communities. We also classified ECM fungi into categories based on known fungal traits associated with substrate exploration and nutrient mobilization strategies since variation in these traits allows the fungi to acquire nutrients across a wide range of abiotic conditions and may influence the outcome of multi-species interactions. Across populations and environmental factors, none of the traits associated with fungal foraging strategy types significantly structured bacterial assemblages, suggesting these ECM fungal traits are not important for understanding endophyte-ECM interactions. Overall, our results suggest

  19. Competitive strategies differentiate closely related species of marine actinobacteria.

    Science.gov (United States)

    Patin, Nastassia V; Duncan, Katherine R; Dorrestein, Pieter C; Jensen, Paul R

    2016-02-01

    Although competition, niche partitioning, and spatial isolation have been used to describe the ecology and evolution of macro-organisms, it is less clear to what extent these principles account for the extraordinary levels of bacterial diversity observed in nature. Ecological interactions among bacteria are particularly challenging to address due to methodological limitations and uncertainties over how to recognize fundamental units of diversity and link them to the functional traits and evolutionary processes that led to their divergence. Here we show that two closely related marine actinomycete species can be differentiated based on competitive strategies. Using a direct challenge assay to investigate inhibitory interactions with members of the bacterial community, we observed a temporal difference in the onset of inhibition. The majority of inhibitory activity exhibited by Salinispora arenicola occurred early in its growth cycle and was linked to antibiotic production. In contrast, most inhibition by Salinispora tropica occurred later in the growth cycle and was more commonly linked to nutrient depletion or other sources. Comparative genomics support these differences, with S. arenicola containing nearly twice the number of secondary metabolite biosynthetic gene clusters as S. tropica, indicating a greater potential for secondary metabolite production. In contrast, S. tropica is enriched in gene clusters associated with the acquisition of growth-limiting nutrients such as iron. Coupled with differences in growth rates, the results reveal that S. arenicola uses interference competition at the expense of growth, whereas S. tropica preferentially employs a strategy of exploitation competition. The results support the ecological divergence of two co-occurring and closely related species of marine bacteria by providing evidence they have evolved fundamentally different strategies to compete in marine sediments.

  20. Strategies for combating bacterial biofilm infections

    National Research Council Canada - National Science Library

    Hong Wu Claus Moser Heng-Zhuang Wang Niels Hoiby Zhi-Jun Song

    2015-01-01

    .... Under the protection of biofilm, microbial cells in biofilm become tolerant and resistant to antibiotics and the immune responses, which increases the difficulties for the clinical treatment of biofilm infections...

  1. Ecologies of Learning, Ecologies of Creativity

    DEFF Research Database (Denmark)

    Høyrup, Helene

    in the light of the new Danish school reform. How can different learning institutions contribute to a “joint” ecology of learning? What would the benefits be from this in terms of young people’s literacies? On what theoretical basis can such an ecology and co-creation take place? And what kind of didactics...

  2. Screening of a micro-ecological fodder starter culture lactic acid bacterial strain and optimization of culture conditions%一株用于微生态饲料发酵剂的乳酸菌筛选及培养条件优化

    Institute of Scientific and Technical Information of China (English)

    杨柳; 张一; 陈宇飞

    2016-01-01

    A micro-ecological fodder starter culture lactic acid bacterial strain was screened and the culture conditions were optimized in this article. The acid production rate of three kinds of lactic acid bacteria was determined, and the antibacterial test for e.coli was carried out. Meanwhile the excellent strains were identified by using French bacteria identification system. The result shows that the acid production rate of type A lactic acid bacteria was fast, with good antibacterial effect. And the type A lactic acid bacteria was identified as Pediococcus pentosus. By studying the effect of each culture con⁃dition on biomass of lactic acid bacteria, we reached that the culture temperature was 30 ℃, stilling culture, inoculum size was 1%, choosing peptone as nitrogen source with the concentration of 8%~10%, the initial pH was 6.5. Under this condition, the biomass of lactic acid bacteria was the highest. These provided a theoretical reference for development and application of micro-ecological fodder start⁃er culture strains.%对用于微生态饲料发酵剂的乳酸菌进行筛选和培养条件优化。测定了3种乳酸菌的产酸速度,进行了大肠杆菌的抑菌效果试验,并利用梅里埃细菌鉴定系统对优良菌种进行鉴定,得出A型乳酸菌的产酸速度快、抑菌效果好,并鉴定该菌为戊糖片球菌;通过研究培养条件诸因素对乳酸菌生物量的影响,研究得出:培养温度30℃、静置培养、接种量1%、氮源选择蛋白胨、碳源浓度为8%~10%、初始pH值为6.5,该条件下乳酸菌的生物量最大。为微生物饲料发酵剂菌种的开发与应用提供理论参考。

  3. Present Development Situation of Transgenic Crops and Effect on Ecological Environment

    Institute of Scientific and Technical Information of China (English)

    Wen Wujun; Liang Hongming

    2005-01-01

    The present development situation of transgenic crops and their effect on ecological environment are introduced in the paper. Some relevant strategies for their future and how to control the risks of ecological environment are presented.

  4. 豫南丘陵山区生态农业SWOT分析与发展策略研究──以新县为例%SWOT Analysis and Development Strategy of Ecological Agriculture in the Hilly and Mountainous Area of Southern Henan:A case of Xinxian County

    Institute of Scientific and Technical Information of China (English)

    孟俊杰; 贾小虎; 乔璐; 陈士勃

    2015-01-01

    以河南省新县为例,运用SWOT分析法,对豫南丘陵山区生态农业的优势、劣势、机遇和风险进行全面分析.结果表明,新县生态农业总体上优势大于劣势,机遇大于挑战,发展策略应重点考虑增长性战略(SO)和多元化战略(ST),同时也应结合扭转化战略(WO)和防御型战略(WT),综合确定新县生态农业发展战略.具体提出了选择适宜主导产业、搞好规划布局、壮大龙头企业、拓展产业链条、健全科技支撑、打造高端品牌、开拓市场营销、加大财政补贴和强化金融扶持等政策建议.%Taking Xinxian County for example, the strengths, weaknesses, opportunities and threats of ecological agriculture in hilly and mountainous area of southern Henan were analyzed by the method of SWOT analysis. The results showed that the strengths and opportunities were greater than the weaknesses and challenges of ecological agriculture, the ecological agriculture development strategy should consider growth strategy (SO) and diversification strategy (ST) and combine turnaround strategy (WO) and defensive strategy (WT). Policy recommendations were put forward such as selecting the suitable leading industry, improving layout, developing leading enterprises, expanding industrial chain, strengthening scientific support, building high-end brands, developing marketing, increasing fiscal subsidies and strengthening financial support.

  5. Bacterial ecology of tilapia fresh fillets and some factors that can influence their microbial quality Ecologia bacteriana de filés frescos de tilápia e de pontos capazes de influenciar a sua qualidade microbiológica

    Directory of Open Access Journals (Sweden)

    Cleube Andrade Boari

    2008-12-01

    Full Text Available The purpose of research was to investigate the bacterial ecology of tilapia (Oreochromis niloticus fresh fillets and some factors that can influence its microbial quality. Samples of fish cultivation water (n = 20, tilapia tegument and gut (n = 20 and fresh fillets (n = 20 were collected in an experimental tilapia aquaculture located in the city of Lavras, Minas Gerais, Brazil. Staphylococcus spp., Aeromonas spp., Enterococcus spp. and Enterobacteriaceae were quantified using selective plating. For the enumeration of Pseudomonas spp., the most probable number technique (MPN was utilized. Bacterial colonies (n = 198 were identified by Gram strain and biochemical tests. Aeromonas spp., Pseudomonas spp., Enterococcus spp. and Enterobacteriaceae were found in the cultivation water (water from a fishpond cultivation, tegument, gut, and fresh fillets. Staphylococcus spp. was not isolated in the cultivation water. Salmonella spp. was not detected. The count variable of 10 to 10³ CFU or MPN.(g or mL-1. Associated to freshwater tilapia fillet processing, there is a large variety of microorganisms related to foodborne illnesses and fish products deterioration.A presente pesquisa foi conduzida com o objetivo de se investigar a ecologia microbiana de filés frescos de tilápia (Oreochromis niloticus e de pontos capazes de influenciar em sua qualidade microbiológica. Para sua condução, amostras de água de cultivo (n = 20, tegumento e trato gastrintestinal (n = 20 e filés frescos (n = 20 foram coletados em um sistema de produção aqüícola de água doce localizado em Lavras, Minas Gerais, Brasil. Staphylococcus spp., Aeromonas spp., Enterococcus spp., Enterobacteriaceae foram quantificados através de plaqueamento seletivo. Pseudomonas spp. foi enumerada através da técnica do número mais provável. Colônias (n = 198 foram identificadas por coloração de Gram e testes bioquímicos. Aeromonas spp., Pseudomonas spp., Enterococcus spp. e

  6. Ecological, Pedagogical, Public Rhetoric

    Science.gov (United States)

    Rivers, Nathaniel A.; Weber, Ryan P.

    2011-01-01

    Public rhetoric pedagogy can benefit from an ecological perspective that sees change as advocated not through a single document but through multiple mundane and monumental texts. This article summarizes various approaches to rhetorical ecology, offers an ecological read of the Montgomery bus boycotts, and concludes with pedagogical insights on a…

  7. Biotechnological applications of bacterial cellulases

    Directory of Open Access Journals (Sweden)

    Esther Menendez

    2015-08-01

    Full Text Available Cellulases have numerous applications in several industries, including biofuel production, food and feed industry, brewing, pulp and paper, textile, laundry, and agriculture.Cellulose-degrading bacteria are widely spread in nature, being isolated from quite different environments. Cellulose degradation is the result of a synergic process between an endoglucanase, an exoglucanase and a,β-glucosidase. Bacterial endoglucanases degrade ß-1,4-glucan linkages of cellulose amorphous zones, meanwhile exoglucanases cleave the remaining oligosaccharide chains, originating cellobiose, which is hydrolyzed by ß-glucanases. Bacterial cellulases (EC 3.2.1.4 are comprised in fourteen Glycosil Hydrolase families. Several advantages, such as higher growth rates and genetic versatility, emphasize the suitability and advantages of bacterial cellulases over other sources for this group of enzymes. This review summarizes the main known cellulolytic bacteria and the best strategies to optimize their cellulase production, focusing on endoglucanases, as well as it reviews the main biotechnological applications of bacterial cellulases in several industries, medicine and agriculture.

  8. Bacterial extracellular polymeric substances (EPS): A carrier of heavy metals in the marine food-chain

    Digital Repository Service at National Institute of Oceanography (India)

    Bhaskar, P.V.; Bhosle, N.B.

    The ecological implications of metal binding properties of bacterial EPS and its possible role in the bioaccumulation of pollutants in the marine food-chain was investigated using a partially purified and chemically characterized microbial EPS...

  9. Distributions of Bacterial Generalists among the Guts of Birds, Fish, and Mammals - abstract

    Science.gov (United States)

    Complex distributions of bacterial taxa within diverse animal microbiomes have inspired ecological and biogeographical approaches to revealing the functions of taxa that may be most important for host health. Of particular interest are bacteria that find many diverse habitats sui...

  10. Distributions of Bacterial Generalists among the Guts of Birds, Fish, and Mammals - abstract

    Science.gov (United States)

    Complex distributions of bacterial taxa within diverse animal microbiomes have inspired ecological and biogeographical approaches to revealing the functions of taxa that may be most important for host health. Of particular interest are bacteria that find many diverse habitats sui...

  11. The microbial ecology of permafrost.

    Science.gov (United States)

    Jansson, Janet K; Taş, Neslihan

    2014-06-01

    Permafrost constitutes a major portion of the terrestrial cryosphere of the Earth and is a unique ecological niche for cold-adapted microorganisms. There is a relatively high microbial diversity in permafrost, although there is some variation in community composition across different permafrost features and between sites. Some microorganisms are even active at subzero temperatures in permafrost. An emerging concern is the impact of climate change and the possibility of subsequent permafrost thaw promoting microbial activity in permafrost, resulting in increased potential for greenhouse-gas emissions. This Review describes new data on the microbial ecology of permafrost and provides a platform for understanding microbial life strategies in frozen soil as well as the impact of climate change on permafrost microorganisms and their functional roles.

  12. Where is behavioural ecology going?

    Science.gov (United States)

    Owens, Ian P F

    2006-07-01

    Since the 1990s, behavioural ecologists have largely abandoned some traditional areas of interest, such as optimal foraging, but many long-standing challenges remain. Moreover, the core strengths of behavioural ecology, including the use of simple adaptive models to investigate complex biological phenomena, have now been applied to new puzzles outside behaviour. But this strategy comes at a cost. Replication across studies is rare and there have been few tests of the underlying genetic assumptions of adaptive models. Here, I attempt to identify the key outstanding questions in behavioural ecology and suggest that researchers must make greater use of model organisms and evolutionary genetics in order to make substantial progress on these topics.

  13. Methyl Methacrylate and Alpha-Methyl Styrene: New Strategy for Synthesis of Bloc Copolymers for Use in Potential Biomedical Applications Generated by an Ecologic Catalyst Called Maghnite (Algerian MMT

    Directory of Open Access Journals (Sweden)

    Moulkheir Ayat

    2016-10-01

    Strategy for Synthesis of Bloc Copolymers for Use in Potential Biomedical Applications Generated by an Ecologic Catalyst called Maghnite (Algerian MMT. Bulletin of Chemical Reaction Engineering & Catalysis, 11 (3: 316-329 (doi: 10.9767/bcrec.11.3.571.316-329 Permalink/DOI: http://doi.org/10.9767/bcrec.11.3.571.316-329

  14. Jellyfish modulate bacterial dynamic and community structure.

    Science.gov (United States)

    Tinta, Tinkara; Kogovšek, Tjaša; Malej, Alenka; Turk, Valentina

    2012-01-01

    bacterial population dynamics and nutrient pathways following jellyfish blooms which have important implications for ecology of coastal waters.

  15. Jellyfish modulate bacterial dynamic and community structure.

    Directory of Open Access Journals (Sweden)

    Tinkara Tinta

    possible changes in bacterial population dynamics and nutrient pathways following jellyfish blooms which have important implications for ecology of coastal waters.

  16. Philosophy of ecology

    CERN Document Server

    Brown, Bryson; Peacock, Kent A

    2011-01-01

    The most pressing problems facing humanity today - over-population, energy shortages, climate change, soil erosion, species extinctions, the risk of epidemic disease, the threat of warfare that could destroy all the hard-won gains of civilization, and even the recent fibrillations of the stock market - are all ecological or have a large ecological component. in this volume philosophers turn their attention to understanding the science of ecology and its huge implications for the human project. To get the application of ecology to policy or other practical concerns right, humanity needs a clear and disinterested philosophical understanding of ecology which can help identify the practical lessons of science. Conversely, the urgent practical demands humanity faces today cannot help but direct scientific and philosophical investigation toward the basis of those ecological challenges that threaten human survival. This book will help to fuel the timely renaissance of interest in philosophy of ecology that is now oc...

  17. Intracellular trafficking of bacterial toxins.

    Science.gov (United States)

    Williams, Jeffrey M; Tsai, Billy

    2016-08-01

    Bacterial toxins often translocate across a cellular membrane to gain access into the host cytosol, modifying cellular components in order to exert their toxic effects. To accomplish this feat, these toxins traffic to a membrane penetration site where they undergo conformational changes essential to eject the toxin's catalytic subunit into the cytosol. In this brief review, we highlight recent findings that elucidate both the trafficking pathways and membrane translocation mechanisms of toxins that cross the plasma, endosomal, or endoplasmic reticulum (ER) membrane. These findings not only illuminate the specific nature of the host-toxin interactions during entry, but should also provide additional therapeutic strategies to prevent or alleviate the bacterial toxin-induced diseases. Copyright © 2016 Elsevier Ltd. All rights reserved.

  18. Game theory and plant ecology.

    Science.gov (United States)

    McNickle, Gordon G; Dybzinski, Ray

    2013-04-01

    The fixed and plastic traits possessed by a plant, which may be collectively thought of as its strategy, are commonly modelled as density-independent adaptations to its environment. However, plant strategies may also represent density- or frequency-dependent adaptations to the strategies used by neighbours. Game theory provides the tools to characterise such density- and frequency-dependent interactions. Here, we review the contributions of game theory to plant ecology. After briefly reviewing game theory from the perspective of plant ecology, we divide our review into three sections. First, game theoretical models of allocation to shoots and roots often predict investment in those organs beyond what would be optimal in the absence of competition. Second, game theoretical models of enemy defence suggest that an individual's investment in defence is not only a means of reducing its own tissue damage but also a means of deflecting enemies onto competitors. Finally, game theoretical models of trade with mutualistic partners suggest that the optimal trade may reflect competition for access to mutualistic partners among plants. In short, our review provides an accessible entrance to game theory that will help plant ecologists enrich their research with its worldview and existing predictions.

  19. Ecological aspect in the systematics of fungi

    Institute of Scientific and Technical Information of China (English)

    Margarita BONDARTSEVA; VL KOMAROV

    2011-01-01

    The main morphological features of fungi representing different evolutionary lines are discussed.Environmental situations which stimulate morphological changes are regarded.It is suggested to define ecological significance of fungal morphological characters,dividing them to the ecologically inert (the main characters determining evolutionary line) and ecologically active -characters which submerged to the changes with the changing of environmental conditions.Two main strategies for fungi in nature are described:raising competitive ability to win conquer for substratum,for the place in ecosystem,and the second way for less competitive species - to adapt to more stressful natural conditions and to occupy ecological niches becoming free.Some examples of analysis of adaptation to substrata and climatic zones by fungi are shown.

  20. The role of temperate bacteriophages in bacterial infection.

    Science.gov (United States)

    Davies, Emily V; Winstanley, Craig; Fothergill, Joanne L; James, Chloe E

    2016-03-01

    Bacteriophages are viruses that infect bacteria. There are an estimated 10(31) phage on the planet, making them the most abundant form of life. We are rapidly approaching the centenary of their identification, and yet still have only a limited understanding of their role in the ecology and evolution of bacterial populations. Temperate prophage carriage is often associated with increased bacterial virulence. The rise in use of technologies, such as genome sequencing and transcriptomics, has highlighted more subtle ways in which prophages contribute to pathogenicity. This review discusses the current knowledge of the multifaceted effects that phage can exert on their hosts and how this may contribute to bacterial adaptation during infection.

  1. Bacterial microcompartments and the modular construction of microbial metabolism.

    Science.gov (United States)

    Kerfeld, Cheryl A; Erbilgin, Onur

    2015-01-01

    Bacterial microcompartments (BMCs) are protein-bound organelles predicted to be present across 23 bacterial phyla. BMCs facilitate carbon fixation as well as the aerobic and anaerobic catabolism of a variety of organic compounds. These functions have been linked to ecological nutrient cycling, symbiosis, pathogenesis, and cardiovascular disease. Within bacterial cells, BMCs are metabolic modules that can be further dissociated into their constituent structural and functional protein domains. Viewing BMCs as genetic, structural, functional, and evolutionary modules provides a framework for understanding both BMC-mediated metabolism and for adapting their architectures for applications in synthetic biology.

  2. Savannah River Ecology Laboratory, annual technical progress report of ecological research for the year ending June 30, 1997

    Energy Technology Data Exchange (ETDEWEB)

    Wein, G.; Rosier, B.

    1997-12-31

    This report provides an overview of the research programs and program components carried out by the Savannah River Ecology Laboratory. Research focused on the following: advanced analytical and spectroscopic techniques for developing novel waste isolation and stabilization technologies as well as cost-effective remediation strategies; ecologically sound management of damaged and remediation of ecological systems; ecotoxicology, remediation, and risk assessment; radioecology, including dose assessments for plants and animals exposed to environmental radiation; and other research support programs.

  3. Savannah River Ecology Laboratory, annual technical progress report of ecological research for the year ending June 30, 1998

    Energy Technology Data Exchange (ETDEWEB)

    Wein, G.; Rosier, B.

    1998-12-31

    This report provides an overview of the research programs and program components carried out by the Savannah River Ecology Laboratory. Research focused on the following: advanced analytical and spectroscopic techniques for developing novel waste isolation and stabilization technologies as well as cost-effective remediation strategies; ecologically sound management of damaged and remediation of ecological systems; ecotoxicology, remediation, and risk assessment; radioecology, including dose assessments for plants and animals exposed to environmental radiation; and other research support programs.

  4. Bacterial motility in the sea and its ecological implications

    DEFF Research Database (Denmark)

    Grossart, Hans-Peter; Riemann, Lasse; Azam, F.

    2001-01-01

    colonization of living and dead algal cells by bacteria. Filtering seawater through a 1 µm filter reduced % motile, again suggesting the importance of particulate loci. Enrichment with dissolved organic nutrients enhanced % motile only after 6 h but it rapidly (=1 h) increased the time individual bacteria were...

  5. [Ecology and mechanisms of bacterial resistance to antibiotics in peritonitis].

    Science.gov (United States)

    Edern, Anita; Fines-Guyon, Marguerite; Castrale, Cindy; Ficheux, Maxence; Ryckelynck, Jean-Philippe; Lobbedez, Thierry

    2012-11-01

    Peritonitis remains a common complication of peritoneal dialysis. The aim of our study is to describe the mechanisms of antibiotic resistance in bacteria isolated during peritonitis in peritoneal dialysis, to determine whether antibiotic therapy proposed by the International Society for Peritoneal Dialysis (ISPD) is adapted to the mechanisms of resistance. All causative microorganisms of peritonitis, isolated in 106 dialysis patients and reported 170 episodes of peritonitis, during the study period (01/01/2005 to 31/12/2010) were reviewed. According to the usual classification, twelve groups of microorganism were created. An interpretive reading of antibiograms was performed in each group to identify resistance phenotypes. The species most frequently isolated are coagulase-negative staphylococci (n=73) of which 46 had PBP2a (penicillin-binding protein). Many Enterobacteriaceae were also isolated (n=45), they are susceptible to third generation cephalosporins with the exception of Enterobacteriaceae producing an extended spectrum β-lactamase (ESBL) or a cephalosporinase. Except for staphylococci, probabilistic antibiotic therapy recommended by the ISPD to treat peritonitis is effective. Indeed, many staphylococci producing a PBP2a, a first-generation cephalosporin cannot be administered in all cases. It is therefore necessary to identify patients with a strain of staphylococcus producing a PBP2a, it must be treated by vancomycin.

  6. Insights into the bacterial and fungal ecology of endodontic infections

    NARCIS (Netherlands)

    Persoon, I.F.

    2016-01-01

    In apical periodontitis, microorganisms infect the dental root canal system and evoke an inflammation in the periapical tissues. Since the host is unable to eliminate this infection, the root canal system has to be disinfected by the dentist during endodontic therapy. After this the inflammation sho

  7. Prevention of bacterial adhesion

    DEFF Research Database (Denmark)

    Klemm, Per; Vejborg, Rebecca Munk; Hancock, Viktoria

    2010-01-01

    Management of bacterial infections is becoming increasingly difficult due to the emergence and increasing prevalence of bacterial pathogens that are resistant to available antibiotics. Conventional antibiotics generally kill bacteria by interfering with vital cellular functions, an approach...... that imposes selection pressure for resistant bacteria. New approaches are urgently needed. Targeting bacterial virulence functions directly is an attractive alternative. An obvious target is bacterial adhesion. Bacterial adhesion to surfaces is the first step in colonization, invasion, and biofilm formation....... As such, adhesion represents the Achilles heel of crucial pathogenic functions. It follows that interference with adhesion can reduce bacterial virulence. Here, we illustrate this important topic with examples of techniques being developed that can inhibit bacterial adhesion. Some of these will become...

  8. Developing social-ecological system indicators using group model building

    NARCIS (Netherlands)

    Vugteveen, P.; Rouwette, E.A.J.A.; Stouten, H.J.; Katwijk, M.M. van; Hanssen, L.S.A.M.

    2015-01-01

    In many coastal regions, activities of multiple users present a growing strain on the ecological state of the area. The necessity of using integrative system approaches to understand and solve coastal problems has become obvious in the last decades. Integrated management strategies for social-ecolog

  9. Marine ecology — some chemical aspects

    Science.gov (United States)

    Scheuer, Paul J.

    1982-11-01

    Relationships among biota on tropical coral reefs are frequently governed by chemical phenomena. This article describes some of the ecological events that may lead to a human intoxication known as ciguatera, and a few examples of the survival strategy that is used by physically unprotected gastropod mollusks.

  10. Ecological modernisation in the public catering sector

    DEFF Research Database (Denmark)

    Nielsen, Thorkild; Mikkelsen, Bent Egberg; Kristensen, Niels Heine

    2009-01-01

    The paper is part of the proceedings of an iPOPY seminar. The authors reflect on whether and how organic food in schools and kindergartens can be described as a part of an ecological modernization strategy in Denmark. They discuss how it has merged with more economically and technically approach...

  11. Ecological modernisation in the public catering sector

    DEFF Research Database (Denmark)

    Nielsen, Thorkild; Mikkelsen, Bent Egberg; Kristensen, Niels Heine

    2009-01-01

    The paper is part of the proceedings of an iPOPY seminar. The authors reflect on whether and how organic food in schools and kindergartens can be described as a part of an ecological modernization strategy in Denmark. They discuss how it has merged with more economically and technically approach ...... in public catering policy....

  12. The relation between oral Candida load and bacterial microbiome profiles in Dutch older adults

    NARCIS (Netherlands)

    Kraneveld, E.A.; Buijs, M.J.; Bonder, M.J.; Visser, M.; Keijser, B.J.F.; Crielaard, W.; Zaura, E.

    2012-01-01

    Currently there are no evidence-based ecological measures for prevention of overgrowth and subsequent infection by fungi in the oral cavity. The aim of this study was to increase our knowledge on fungal-bacterial ecological interactions. Salivary Candida abundance of 82 Dutch adults aged 58-80 years

  13. The relation between oral candida load and bacterial microbiome profiles in dutch older adults

    NARCIS (Netherlands)

    Kraneveld, E.A.; Buijs, M.J.; Bonder, M.J.; Visser, M.; Keijser, B.J.F.; Crielaard, W.; Zaura, E.

    2012-01-01

    Currently there are no evidence-based ecological measures for prevention of overgrowth and subsequent infection by fungi in the oral cavity. The aim of this study was to increase our knowledge on fungal-bacterial ecological interactions. Salivary Candida abundance of 82 Dutch adults aged 58-80 years

  14. Brain size and ecology in small mammals and primates.

    OpenAIRE

    1980-01-01

    Comparisons of brain-body size relationships within small mammal and primate families reveal intergeneric differences related to diet and foraging strategy. These same associations between relative brain size and ecology are also evident among interfamily comparisons.

  15. Plant growth-promoting bacterial endophytes.

    Science.gov (United States)

    Santoyo, Gustavo; Moreno-Hagelsieb, Gabriel; Orozco-Mosqueda, Ma del Carmen; Glick, Bernard R

    2016-02-01

    Bacterial endophytes ubiquitously colonize the internal tissues of plants, being found in nearly every plant worldwide. Some endophytes are able to promote the growth of plants. For those strains the mechanisms of plant growth-promotion known to be employed by bacterial endophytes are similar to the mechanisms used by rhizospheric bacteria, e.g., the acquisition of resources needed for plant growth and modulation of plant growth and development. Similar to rhizospheric plant growth-promoting bacteria, endophytic plant growth-promoting bacteria can act to facilitate plant growth in agriculture, horticulture and silviculture as well as in strategies for environmental cleanup (i.e., phytoremediation). Genome comparisons between bacterial endophytes and the genomes of rhizospheric plant growth-promoting bacteria are starting to unveil potential genetic factors involved in an endophytic lifestyle, which should facilitate a better understanding of the functioning of bacterial endophytes.

  16. Characterization of novel Acidobacteria exopolysaccharides with potential industrial and ecological applications

    NARCIS (Netherlands)

    Kielak, A.M.; Castellane, T.C.L.; Campanharo, J.C.; Colnago, L.A.; Costa, Ohana Y.A.; Corradi da Silva, M.L.; van Veen, J.A.; Lemos, E.G.; Kuramae, E.E.

    2017-01-01

    Acidobacteria have been described as one of the most abundant and ubiquitous bacterial phyla in soil. However, factors contributing to this ecological success are not well elucidated mainly due to difficulties in bacterial isolation. Acidobacteria may be able to survive for long periods in soil due

  17. The ecology of transfer of mobile genetic elements

    NARCIS (Netherlands)

    Elsas, van J.D.; Bailey, M.J.

    2002-01-01

    The ecological aspects of the transfer and spread of mobile genetic elements (MGE) are reviewed in the context of the emerging evidence for the dominant role that horizontal gene transfer (HGT) has played in the evolutionary shaping of bacterial communities. Novel tools are described that allow a re

  18. [Vaginal ecology, climate, landscapes and populations (xenoecies and facies)].

    Science.gov (United States)

    Nicoli, J M; Nourrit, J; Michel-Nguyen, A; Sempe, M; Nicoli, R M

    1994-06-01

    Brief study of vaginal populations, the human vagina being considered as a biotopic cavity. Allusion to dynamic aspects ("vaginal climate", "landscapes") and to various bacterial populations. Introduction of the concept of xenoecies and of facies. This study is preceded by essential definitions of terms widely used in ecology.

  19. Properties of bacterial endophytes and their proposed role in plant growth

    NARCIS (Netherlands)

    Hardoim, Pablo R.; van Overbeek, Leo S.; van Elsas, Jan Dirk

    2008-01-01

    Bacterial endophytes live inside plants for at least part of their life cycle. Studies of the interaction of endophytes with their host plants and their function within their hosts are important to address the ecological relevance of endophytes. The modulation of ethylene levels in plants by bacteri

  20. [Demography and human ecology].

    Science.gov (United States)

    Nazareth, J M

    1993-01-01

    At the end of the 19th century the German biologist Ernest Haekel was the first scientist to use the term ecology, which was defined as the study of relationships of organisms or groups of organisms with the environment and indicated the interdependence of the living world, including plants, animals, and humans. This concept also indicates a continuous process of adaptation of organisms to their external environment. The basic concepts of scientific ecology, which developed at the end of the 19th century, can be attributed to Darwin: the relationships between living beings and the notion of the process of adaptation to their environment. The term human ecology appeared in the early 1920s. Human ecology embodies fundamental ideas: biotype, habitat, community, biocenosis, ecosystem, biomass, interchange and equilibrium, and circulation of energy. The accumulated knowledge about human ecology is broken down using the criteria of topography (ecology of humid forests, deserts, lakes, etc.); followed by the appearance of species; and the variants of classical division: auto ecology (influence of external factors on living beings) and sinecology (the study of groups of associated organisms, i.e., natural, animal, and vegetation communities). The species are considered on the basis of equality or sinecology (all of them have the same interests), while in human ecology a species is determined by its relation to a reference group--autoecology or anthropocentric ecology. In 1911, J. Thompson bridged the gap between biological knowledge and social sciences; in 1921, H. Barrows identified human ecology as a component of geography; in 1925, L. Bernard presented the classification of ecosystems; and in 1936, Ezra Park published his work, Human Ecology, followed in 1945 by the emergence of the Chicago school. Demography and human ecology are intimately connected because population is the result of natural and migratory movements, therefore the two sciences require a methodology

  1. Between Design and Ecology

    DEFF Research Database (Denmark)

    Bjørn, Mona Chor

    such vegetation, based on concepts and theories in plant community ecology. If these communities are based on local forbs there is a continuum in anthropogenic intervention from designed and intensively maintained to semi-natural herbaceous vegetation. Results from a large field experiment show that, after three...... colonised by grasses and eventually woody species. This thesis adds useful basic knowledge in plant community ecology and species-specific growth, which are relevant to research and planning in landscape architecture and ecology....

  2. Development of Ecological Buildings

    Directory of Open Access Journals (Sweden)

    Andrius Keizikas

    2011-04-01

    Full Text Available The article presents research on ecological buildings and their influence on the constructional sphere. The aim of the paper is to reveal the essence of ecological architecture showing substantial progress and its potential to stimulate architectural and technological growth. The article also describes relations between the ideas of ecological buildings and the ‘passive house’ concepts and aspects of development as well as describes the possibilities of improving building sustainability and energy efficiency. Article in Lithuanian

  3. Between Design and Ecology

    DEFF Research Database (Denmark)

    Bjørn, Mona Chor

    such vegetation, based on concepts and theories in plant community ecology. If these communities are based on local forbs there is a continuum in anthropogenic intervention from designed and intensively maintained to semi-natural herbaceous vegetation. Results from a large field experiment show that, after three...... colonised by grasses and eventually woody species. This thesis adds useful basic knowledge in plant community ecology and species-specific growth, which are relevant to research and planning in landscape architecture and ecology....

  4. Social Ecological Economics

    OpenAIRE

    Spash, Clive L.

    2009-01-01

    This paper introduces and explains how ecological economics has developed as a modern movement with its roots in environmentalism and radical environmental economics. Divisions and conflicts within the field are explored to show why material claiming to fall under the title of ecological economics fails to be representative of progress or the vision which drove socio-economic specialists to interact with ecologists in the first place. The argument is then put forward that ecological economics...

  5. Urban Sound Ecologies

    DEFF Research Database (Denmark)

    Groth, Sanne Krogh; Samson, Kristine

    2013-01-01

    share the characteristics of site specificity. However, this article will consider the artwork in a broader context by re-examining how sound installations relate to the urban environment. For that purpose, this article brings together ecology terms from acoustic ecology of the sound theories...... of the 1970s while developing them into recent definitions of ecology in urban studies. Finally, we unfold our framing of urban sound ecologies with three case analyses: a sound intervention in Berlin, a symphony for wind instruments in Copenhagen and a video walk in a former railway station in Kassel...

  6. Chemical ecology of fungi.

    Science.gov (United States)

    Spiteller, Peter

    2015-07-01

    Fungi are widespread in nature and have conquered nearly every ecological niche. Fungi occur not only in terrestrial but also in freshwater and marine environments. Moreover, fungi are known as a rich source of secondary metabolites. Despite these facts, the ecological role of many of these metabolites is still unknown and the chemical ecology of fungi has not been investigated systematically so far. This review intends to present examples of the various chemical interactions of fungi with other fungi, plants, bacteria and animals and to give an overview of the current knowledge of fungal chemical ecology.

  7. Characterization of the Bacterial Communities of Life Stages of Free Living Lone Star Ticks (Amblyomma americanum)

    OpenAIRE

    Amanda Jo Williams-Newkirk; Rowe, Lori A.; Mixson-Hayden, Tonya R.; Dasch, Gregory A.

    2014-01-01

    The lone star tick (Amblyomma americanum) is an abundant and aggressive biter of humans, domestic animals, and wildlife in the southeastern-central USA and an important vector of several known and suspected zoonotic bacterial pathogens. However, the biological drivers of bacterial community variation in this tick are still poorly defined. Knowing the community context in which tick-borne bacterial pathogens exist and evolve is required to fully understand the ecology and immunobiology of the ...

  8. Peritonitis - spontaneous bacterial

    Science.gov (United States)

    Spontaneous bacterial peritonitis (SBP); Ascites - peritonitis; Cirrhosis - peritonitis ... who are on peritoneal dialysis for kidney failure. Peritonitis may have other causes . These include infection from ...

  9. Evolution in Littorina: ecology matters

    Science.gov (United States)

    Johannesson, Kerstin

    2003-03-01

    Organisms of marine rocky shores are exposed to physical stress from abiotic factors, such as temperature, salinity and wave action. These factors vary over compressed temporal and spatial scales, producing an exceedingly heterogeneous habitat with steep gradients of selection, and it seems likely that this has a strong influence on the evolution of populations of rocky shore organisms. With the periwinkles (genus Littorina) as a model group, I review strategies for coping with small-scale heterogeneous environments and what implications these strategies have on the evolution of these species. Some species of Littorina have long-lived pelagic larvae and sites of various habitats are thus recruited from a common gene pool. This largely prevents local adaptation but minor adjustments are possible through a plastic phenotype. Other species of the genus are directly developing with no larval dispersal and among these there is evidence of strong local adaptation forming distinct ecotypes in contrasting habitats by parallel evolution. In at least one of the directly developing species ( L. saxatilis) divergent selection among ecotypes has resulted in partial reproductive barriers that further impede gene flow among ecotypes. Furthermore, convergent evolution among species has produced superficially similar morphs in different habitats. Ecotype formation, ecological reproductive barriers and convergence among species all indicate that ecological processes are critical for evolution of Littorina species.

  10. Guiding bioprocess design by microbial ecology.

    Science.gov (United States)

    Volmer, Jan; Schmid, Andreas; Bühler, Bruno

    2015-06-01

    Industrial bioprocess development is driven by profitability and eco-efficiency. It profits from an early stage definition of process and biocatalyst design objectives. Microbial bioprocess environments can be considered as synthetic technical microbial ecosystems. Natural systems follow Darwinian evolution principles aiming at survival and reproduction. Technical systems objectives are eco-efficiency, productivity, and profitable production. Deciphering technical microbial ecology reveals differences and similarities of natural and technical systems objectives, which are discussed in this review in view of biocatalyst and process design and engineering strategies. Strategies for handling opposing objectives of natural and technical systems and for exploiting and engineering natural properties of microorganisms for technical systems are reviewed based on examples. This illustrates the relevance of considering microbial ecology for bioprocess design and the potential for exploitation by synthetic biology strategies.

  11. MELA: Modelling in Ecology with Location Attributes

    Directory of Open Access Journals (Sweden)

    Ludovica Luisa Vissat

    2016-10-01

    Full Text Available Ecology studies the interactions between individuals, species and the environment. The ability to predict the dynamics of ecological systems would support the design and monitoring of control strategies and would help to address pressing global environmental issues. It is also important to plan for efficient use of natural resources and maintenance of critical ecosystem services. The mathematical modelling of ecological systems often includes nontrivial specifications of processes that influence the birth, death, development and movement of individuals in the environment, that take into account both biotic and abiotic interactions. To assist in the specification of such models, we introduce MELA, a process algebra for Modelling in Ecology with Location Attributes. Process algebras allow the modeller to describe concurrent systems in a high-level language. A key feature of concurrent systems is that they are composed of agents that can progress simultaneously but also interact - a good match to ecological systems. MELA aims to provide ecologists with a straightforward yet flexible tool for modelling ecological systems, with particular emphasis on the description of space and the environment. Here we present four example MELA models, illustrating the different spatial arrangements which can be accommodated and demonstrating the use of MELA in epidemiological and predator-prey scenarios.

  12. Changes in bacterial diversity associated with bioremediation of used lubricating oil in tropical soils.

    Science.gov (United States)

    Meeboon, Naruemon; Leewis, Mary-Cathrine; Kaewsuwan, Sireewan; Maneerat, Suppasil; Leigh, Mary Beth

    2017-08-01

    Used lubricating oil (ULO) is a widespread contaminant, particularly throughout tropical regions, and may be a candidate for bioremediation. However, little is known about the biodegradation potential or basic microbial ecology of ULO-contaminated soils. This study aims to determine the effects of used ULO on bacterial community structure and diversity. Using a combination of culture-based (agar plate counts) and molecular techniques (16S rRNA gene sequencing and DGGE), we investigated changes in soil bacterial communities from three different ULO-contaminated soils collected from motorcycle mechanical workshops (soil A, B, and C). We further explored the relationship between bacterial community structure, physiochemical soil parameters, and ULO composition in three ULO-contaminated soils. Results indicated that the three investigated soils had different community structures, which may be a result of the different ULO characteristics and physiochemical soil parameters of each site. Soil C had the highest ULO concentration and also the greatest diversity and richness of bacteria, which may be a result of higher nutrient retention, organic matter and cation exchange capacity, as well as freshness of oil compared to the other soils. In soils A and B, Proteobacteria (esp. Gammaproteobacteria) dominated the bacterial community, and in soil C, Actinobacteria and Firmicutes dominated. The genus Enterobacter, a member of the class Gammaproteobacteria, is known to include ULO-degraders, and this genus was the only one found in all three soils, suggesting that it could play a key role in the in situ degradation of ULO-contaminated tropical Thai soils. This study provides insights into our understanding of soil microbial richness, diversity, composition, and structure in tropical ULO-contaminated soils, and may be useful for the development of strategies to improve bioremediation.

  13. RADIOECOLOGY AND ECOLOGICAL IMMUNOLOGY

    Directory of Open Access Journals (Sweden)

    V. M. Shubik

    2009-01-01

    Full Text Available The author's investigations results are presented in comparing with literary materials concerning the application of principles and methods of ecological immunology for solving radioecological questions. The data on characteristic of immunity and health of human population affected with radiation factors of the environment is given as well as animals' population state as the links offood ecological chains.

  14. Quantitative plant ecology

    DEFF Research Database (Denmark)

    Damgaard, Christian

    2014-01-01

    This e-book is written in the Wolfram' CDF format (download free CDF player from Wolfram.com) The objective of this e-book is to introduce the population ecological concepts for measuring and predicting the ecological success of plant species. This will be done by focusing on the measurement......, will not be covered in this e-book....

  15. The Unit of Ecology.

    Science.gov (United States)

    Darling, F. Fraser

    After summarizing the development of ecology from botanical and zoological studies to a study of entire biological communities, the history of wool growing in England and the development of nomadism on the Asian steppes and the North American prairies is described. These examples are interpreted ecologically and used to illustrate the theses that…

  16. The ecology of citizenship

    NARCIS (Netherlands)

    Coates, Robert; Garmany, Jeff

    2017-01-01

    This article calls into question the relationship between citizenship, space and ecological stability. Drawing on case study research from urban Brazil, we argue that while space may be crucial to Western perspectives of citizenship – particularly in urban areas – the ecological coproduction of thes

  17. Quantitative plant ecology

    DEFF Research Database (Denmark)

    Damgaard, Christian

    2014-01-01

    This e-book is written in the Wolfram' CDF format (download free CDF player from Wolfram.com) The objective of this e-book is to introduce the population ecological concepts for measuring and predicting the ecological success of plant species. This will be done by focusing on the measurement......, will not be covered in this e-book....

  18. Urban Ecology and Transformation of Technical Infrastructure

    DEFF Research Database (Denmark)

    Nielsen, Susanne Balslev

    1999-01-01

    There is a need to rethink technical infrastructure for energy and water provision and for handling sewage and solic waste due to environmental problems related to the current large-scale systems. From the authors point of view this includes a shift towards combining bottom-up strategies with top......-down strategies instead of seeing such strategies as incompatible. Today´s planning practice and the momentum of the established systems require new forums for stratgic debates if urban ecology is to be included in future network management. A methodolgy is presented for structuring a debate on future sustainable...

  19. Ecological problems in the food industry

    Directory of Open Access Journals (Sweden)

    Božović Milan

    2002-01-01

    Full Text Available In regard to the development of agricultural and food technologies Yugoslavia up till now has not had a developed strategy of "development of the environment" - an ecological strategy, nor has it in that respect had clearly defined political scientifically-based strategies. Current efforts to define developmental concepts are almost completely neglected, foremost in the "promotion of new ecologically justified technologies" and the formation of national programs of sustainable development. World trends in this area are already directed to the production and promotion of so-called "healthy food" which, designated in several ways, is becoming more and more present on the tables of developed countries. Yugoslavia, beside its current economic difficulties, has great potential and a elastic chance to follow world trends and completely satisfy the EU standards EVRO-EMA and world ecological standards ISO 14 000 by the quality implementation of well planned ecologically and economically rational programs. n order to undertake appropriate measures for "sustainable development", it s previously necessary to assess the problem and objectively establish the status.

  20. Predictive systems ecology.

    Science.gov (United States)

    Evans, Matthew R; Bithell, Mike; Cornell, Stephen J; Dall, Sasha R X; Díaz, Sandra; Emmott, Stephen; Ernande, Bruno; Grimm, Volker; Hodgson, David J; Lewis, Simon L; Mace, Georgina M; Morecroft, Michael; Moustakas, Aristides; Murphy, Eugene; Newbold, Tim; Norris, K J; Petchey, Owen; Smith, Matthew; Travis, Justin M J; Benton, Tim G

    2013-11-22

    Human societies, and their well-being, depend to a significant extent on the state of the ecosystems that surround them. These ecosystems are changing rapidly usually in response to anthropogenic changes in the environment. To determine the likely impact of environmental change on ecosystems and the best ways to manage them, it would be desirable to be able to predict their future states. We present a proposal to develop the paradigm of predictive systems ecology, explicitly to understand and predict the properties and behaviour of ecological systems. We discuss the necessary and desirable features of predictive systems ecology models. There are places where predictive systems ecology is already being practised and we summarize a range of terrestrial and marine examples. Significant challenges remain but we suggest that ecology would benefit both as a scientific discipline and increase its impact in society if it were to embrace the need to become more predictive.

  1. What is dental ecology?

    Science.gov (United States)

    Cuozzo, Frank P; Sauther, Michelle L

    2012-06-01

    Teeth have long been used as indicators of primate ecology. Early work focused on the links between dental morphology, diet, and behavior, with more recent years emphasizing dental wear, microstructure, development, and biogeochemistry, to understand primate ecology. Our study of Lemur catta at the Beza Mahafaly Special Reserve, Madagascar, has revealed an unusual pattern of severe tooth wear and frequent tooth loss, primarily the result of consuming a fallback food for which these primates are not dentally adapted. Interpreting these data was only possible by combining our areas of expertise (dental anatomy [FC] and primate ecology [MS]). By integrating theoretical, methodological, and applied aspects of both areas of research, we adopted the term "dental ecology"-defined as the broad study of how teeth respond to the environment. Specifically, we view dental ecology as an interpretive framework using teeth as a vehicle for understanding an organism's ecology, which builds upon earlier work, but creates a new synthesis of anatomy and ecology that is only possible with detailed knowledge of living primates. This framework includes (1) identifying patterns of dental pathology and tooth use-wear, within the context of feeding ecology, behavior, habitat variation, and anthropogenic change, (2) assessing ways in which dental development and biogeochemical signals can reflect habitat, environmental change and/or stress, and (3) how dental microstructure and macro-morphology are adapted to, and reflect feeding ecology. Here we define dental ecology, provide a short summary of the development of this perspective, and place our new work into this context. Copyright © 2012 Wiley Periodicals, Inc.

  2. Bacterial contamination of platelet concentrates: pathogen detection and inactivation methods

    Directory of Open Access Journals (Sweden)

    Dana Védy

    2009-04-01

    Full Text Available Whereas the reduction of transfusion related viral transmission has been a priority during the last decade, bacterial infection transmitted by transfusion still remains associated to a high morbidity and mortality, and constitutes the most frequent infectious risk of transfusion. This problem especially concerns platelet concentrates because of their favorable bacterial growth conditions. This review gives an overview of platelet transfusion-related bacterial contamination as well as on the different strategies to reduce this problem by using either bacterial detection or inactivation methods.

  3. Optimal control methods for controlling bacterial populations with persister dynamics

    Science.gov (United States)

    Cogan, N. G.

    2016-06-01

    Bacterial tolerance to antibiotics is a well-known phenomena; however, only recent studies of bacterial biofilms have shown how multifaceted tolerance really is. By joining into a structured community and offering shared protection and gene transfer, bacterial populations can protect themselves genotypically, phenotypically and physically. In this study, we collect a line of research that focuses on phenotypic (or plastic) tolerance. The dynamics of persister formation are becoming better understood, even though there are major questions that remain. The thrust of our results indicate that even without detailed description of the biological mechanisms, theoretical studies can offer strategies that can eradicate bacterial populations with existing drugs.

  4. Environmentally acceptable mobility in Europe: New strategies for passenger and goods transport. A contribution to ecologically compatible mobility. Documentation; Umweltgerecht mobil in Europa: Menschen und Gueter auf neuen Wegen. Ein Beitrag zur oekologisch vertraeglichen Mobilitaet. Dokumentation

    Energy Technology Data Exchange (ETDEWEB)

    Link, F.G. [Akademie fuer Natur- und Umweltschutz beim Ministerium fuer Umwelt und Verkehr des Landes Baden-Wuerttemberg, Stuttgart (Germany); Diekmann, P.; Holzwarth, J. [comps.] [Ministerium fuer Umwelt und Verkehr des Landes Baden-Wuerttemberg, Stuttgart (Germany)

    1998-11-01

    The traffic sector, with its transport systems and structures which for the most part are not ecologically acceptable, is a significant obstacle to sustainable development. As a contribution to a future-orientated, optimized consideration of both the need for mobility and the necessity of environmental protection, this volume presents big and small steps that can be taken to prevent traffic from the view of politicians, practicians and scientists in the field of passenger and goods transport. (orig.)

  5. Fermented liquid feed enhances bacterial diversity in piglet intestine.

    Science.gov (United States)

    Tajima, Kiyoshi; Ohmori, Hideyuki; Aminov, Rustam I; Kobashi, Yuri; Kawashima, Tomoyuki

    2010-02-01

    Because of limitations imposed on the antibiotic use in animal industry, there is a need for alternatives to maintain the efficiency of production. One of them may be the use of fermented liquid feed (FLF) but how it affects gut ecology is poorly understood. We investigated the effect of three diets, standard dry feed (control), dry feed supplemented with antibiotics, and fermented liquid feed (FLF, fermented with Lactobacillus plantarum), on gut bacterial diversity in piglets. The structure of the ileal and caecal communities was estimated by sequencing the SSU rRNA gene libraries. Antibiotic-supplemented feed slightly increased bacterial diversity in the ileum but reduced it in the caecum while in FLF-fed animals bacterial diversity was elevated. The majority of bacterial sequences in the ileum of all three groups belonged to lactobacilli (92-98%). In the caecum the lactobacilli were still dominant in control and antibiotic-fed animals (59% and 64% of total bacterial sequences, respectively) but in FLF-fed animals they fell to 31% with the concomitant increase in the Firmicutes diversity represented by the Dorea, Coprococcus, Roseburia and Faecalibacterium genera. Thus FLF affects the gut ecology in a different way than antibiotics and contributes to the enhanced bacterial diversity in the gastrointestinal tract.

  6. Bacterial diversity in the oral cavity of 10 healthy individuals.

    Science.gov (United States)

    Bik, Elisabeth M; Long, Clara Davis; Armitage, Gary C; Loomer, Peter; Emerson, Joanne; Mongodin, Emmanuel F; Nelson, Karen E; Gill, Steven R; Fraser-Liggett, Claire M; Relman, David A

    2010-08-01

    The composition of the oral microbiota from 10 individuals with healthy oral tissues was determined using culture-independent techniques. From each individual, 26 specimens, each from different oral sites at a single point in time, were collected and pooled. An 11th pool was constructed using portions of the subgingival specimens from all 10 individuals. The 16S ribosomal RNA gene was amplified using broad-range bacterial primers, and clone libraries from the individual and subgingival pools were constructed. From a total of 11,368 high-quality, nonchimeric, near full-length sequences, 247 species-level phylotypes (using a 99% sequence identity threshold) and 9 bacterial phyla were identified. At least 15 bacterial genera were conserved among all 10 individuals, with significant interindividual differences at the species and strain level. Comparisons of these oral bacterial sequences with near full-length sequences found previously in the large intestines and feces of other healthy individuals suggest that the mouth and intestinal tract harbor distinct sets of bacteria. Co-occurrence analysis showed significant segregation of taxa when community membership was examined at the level of genus, but not at the level of species, suggesting that ecologically significant, competitive interactions are more apparent at a broader taxonomic level than species. This study is one of the more comprehensive, high-resolution analyses of bacterial diversity within the healthy human mouth to date, and highlights the value of tools from macroecology for enhancing our understanding of bacterial ecology in human health.

  7. Population bottlenecks promote cooperation in bacterial biofilms.

    Directory of Open Access Journals (Sweden)

    Michael A Brockhurst

    Full Text Available Population bottlenecks are assumed to play a key role in the maintenance of social traits in microbes. Ecological parameters such as colonisation or disturbances can favour cooperation through causing population bottlenecks that enhance genetic structuring (relatedness. However, the size of the population bottleneck is likely to play a crucial role in determining the success of cooperation. Relatedness is likely to increase with decreasing bottleneck size thus favouring the evolution of cooperation. I used an experimental evolution approach to test this prediction with biofilm formation by the bacterium Pseudomonas fluorescens as the cooperative trait. Replicate populations were exposed to disturbance events every four days under one of six population bottleneck treatments (from 10(3 to 10(8 bacterial cells. In line with predictions, the frequency of evolved cheats within the populations increased with increasing bottleneck size. This result highlights the importance of ecologically mediated population bottlenecks in the maintenance of social traits in microbes.

  8. Prevention of bacterial adhesion

    DEFF Research Database (Denmark)

    Klemm, Per; Vejborg, Rebecca Munk; Hancock, Viktoria

    2010-01-01

    Management of bacterial infections is becoming increasingly difficult due to the emergence and increasing prevalence of bacterial pathogens that are resistant to available antibiotics. Conventional antibiotics generally kill bacteria by interfering with vital cellular functions, an approach that ...... valuable weapons for preventing pathogen contamination and fighting infectious diseases in the future....

  9. Bacterial diseases affecting apple

    Science.gov (United States)

    Bacterial diseases of plants are usually difficult to control and often require a combination of control measures to successfully manage the disease. There are often stark differences between the means available to control bacterial diseases in annual crops versus a woody tree crop, such as apple. ...

  10. The enzymes of bacterial census and censorship.

    Science.gov (United States)

    Fast, Walter; Tipton, Peter A

    2012-01-01

    N-Acyl-L-homoserine lactones (AHLs) are a major class of quorum-sensing signals used by Gram-negative bacteria to regulate gene expression in a population-dependent manner, thereby enabling group behavior. Enzymes capable of generating and catabolizing AHL signals are of significant interest for the study of microbial ecology and quorum-sensing pathways, for understanding the systems that bacteria have evolved to interact with small-molecule signals, and for their possible use in therapeutic and industrial applications. The recent structural and functional studies reviewed here provide a detailed insight into the chemistry and enzymology of bacterial communication.

  11. Bacterial cell division as a target for new antibiotics.

    Science.gov (United States)

    Sass, Peter; Brötz-Oesterhelt, Heike

    2013-10-01

    Bacterial resistance to currently applied antibiotics complicates the treatment of infections and demands the evaluation of new strategies to counteract multidrug-resistant bacteria. In recent years, the inhibition of the bacterial divisome, mainly by targeting the central cell division mediator FtsZ, has been recognized as a promising strategy for antibiotic attack. New antibiotics were shown to either interfere with the natural dynamics and functions of FtsZ during the cell cycle or to activate a bacterial protease to degrade FtsZ and thus bring about bacterial death in a suicidal manner. Their efficacy in animal models of infection together with resistance-breaking properties prove the potential of such drugs and validate the inhibition of bacterial cell division as an attractive approach for antibiotic intervention.

  12. 生态现代化理论视野下的山东省“黄三角”发展战略研究%A Study on Development Strategy of Yellow River Delta from Ecological Modernization Perspective

    Institute of Scientific and Technical Information of China (English)

    李慧明; 李彦文

    2014-01-01

    The core of ecological modernization theory is, by using forward-looking environment-friendly poli-cies through market mechanism and technological innovation, to promote industrial productivity and upgrade eco-nomic structure. Ecological modernization theory emphasizes that green innovation can promote economic devel-opment while reducing environmental degradation through market competition and national wise governance to achieve a win-win symbiotic relationship between economic development and environmental improvement. Based on the survey of economic and social development of ecological modernization in recent five years in high-effi-ciency ecological economic zone in the Yellow River delta in Shandong Province, the synergy between economic development and environmental protection, dematerialization, cleanization, economization and ecologization of eco-nomic development have seen remarkable effects. Significant progress has been made in ecological modernization construction. But, ecological ideas still need to be deepened during the process of development practice and win-win results between economic development and environmental improvement need to be further consolidated and enhanced.%生态现代化理论的核心之点在于通过一种前瞻性的环境友好政策,以市场机制和技术革新促进工业生产率的提高和经济结构的升级,强调市场经济竞争和国家“明智”管治推动下的绿色革新可以在促进经济发展的同时减少环境破坏,实现“环境”与“发展”之间一种兼得或共赢的共生性关系。本文通过对山东省黄河三角洲高效生态经济区近五年来经济社会发展的生态现代化审视表明,“黄三角”地区经济发展与环境保护的协同化,以及经济发展的轻量化、清洁化、节约化和生态化都取得了显著的成效,生态现代化建设有了明显的进步,但发展实践中的“生态化”理念还有待深化,经济发展与

  13. Glucocorticosteroids: as Adjuvant Therapy for Bacterial Infections

    Directory of Open Access Journals (Sweden)

    WONDIM MELKAM

    2015-01-01

    Full Text Available Glucocorticoids (GCs, synthetic analogues of the natural steroid hormones, are well known for their antiinflammatory and immunosuppressive properties in the periphery. They are widely and successfully used in the treatment of autoimmune diseases, chronic inflammation, and transplant rejection. Nowadays, GCs are claimed to have a beneficial role being as adjunct therapy in various infections. Different studies have been conducted to investigate their use as adjuvant therapy for different bacterial infection. This review, therefore, summarizes various bacterial infections for which glucocorticoids are reported to be used as adjuvant therapy, strategies for administration of glucocorticoids, and challenges of using glucocorticoids as adjuvant therapy.

  14. Recent Developments in Ecological Economics

    DEFF Research Database (Denmark)

    Reader with published articles within the field of ecological economics, mostly from 1997 - 2007......Reader with published articles within the field of ecological economics, mostly from 1997 - 2007...

  15. Bacterial Communities and Midgut Microbiota Associated with Mosquito Populations from Waste Tires in East-Central Illinois.

    Science.gov (United States)

    Kim, Chang-Hyun; Lampman, Richard L; Muturi, Ephantus J

    2015-01-01

    Mosquito-microbe interactions tend to influence larval nutrition, immunity, and development, as well as fitness and vectorial capacity of adults. Understanding the role of different bacterial species not only improves our knowledge of the physiological and ecological consequences of these interactions, but also provides the basis for developing novel strategies for controlling mosquito-borne diseases. We used culture-dependent and culture-independent techniques to characterize the bacterial composition and abundance in water and midgut samples of larval and adult females of Aedes japonicus (Theobald), Aedes triseriatus (Say), and Culex restuans (Theobald) collected from waste tires at two wooded study sites in Urbana, IL. The phylum-specific real-time quantitative polymerase chain reaction assay revealed a higher proportion of Actinobacteria and a lower proportion of gamma-Proteobacteria and Bacteroidetes in water samples and larval midguts compared to adult female midguts. Only 15 of the 57 bacterial species isolated in this study occurred in both study sites. The number of bacterial species was highest in water samples (28 species from Trelease Woods; 25 species from South Farms), intermediate in larval midguts (13 species from Ae. japonicus; 12 species from Ae. triseriatus; 8 species from Cx. restuans), and lowest in adult female midguts (2 species from Ae. japonicus; 3 species from Ae. triseriatus). These findings suggest that the composition and richness of bacterial communities varies both between habitats and among mosquito species and that the reduction in bacteria diversity during metamorphosis is more evident among bacteria detected using the culture-dependent method.

  16. Soil pH and electrical conductivity are key edaphic factors shaping bacterial communities of greenhouse soils in Korea.

    Science.gov (United States)

    Kim, Jeong Myeong; Roh, An-Sung; Choi, Seung-Chul; Kim, Eun-Jeong; Choi, Moon-Tae; Ahn, Byung-Koo; Kim, Sun-Kuk; Lee, Young-Han; Joa, Jae-Ho; Kang, Seong-Soo; Lee, Shin Ae; Ahn, Jae-Hyung; Song, Jaekyeong; Weon, Hang-Yeon

    2016-12-01

    Soil microorganisms play an essential role in soil ecosystem processes such as organic matter decomposition, nutrient cycling, and plant nutrient availability. The land use for greenhouse cultivation has been increasing continuously, which involves an intensive input of agricultural materials to enhance productivity; however, relatively little is known about bacterial communities in greenhouse soils. To assess the effects of environmental factors on the soil bacterial diversity and community composition, a total of 187 greenhouse soil samples collected across Korea were subjected to bacterial 16S rRNA gene pyrosequencing analysis. A total of 11,865 operational taxonomic units at a 97% similarity cutoff level were detected from 847,560 sequences. Among nine soil factors evaluated; pH, electrical conductivity (EC), exchangeable cations (Ca(2+), Mg(2+), Na(+), and K(+)), available P2O5, organic matter, and NO3-N, soil pH was most strongly correlated with bacterial richness (polynomial regression, pH: R(2) = 0.1683, P pH: R(2) = 0.1765, P pH and EC (Mantel test, pH: r = 0.2672, P 1%), the relative abundances of Proteobacteria, Gemmatimonadetes, Acidobacteria, Bacteroidetes, Chloroflexi, and Planctomycetes were also more strongly correlated with pH and EC values, compared with other soil cation contents, such as Ca(2+), Mg(2+), Na(+), and K(+). Our results suggest that, despite the heterogeneity of various environmental variables, the bacterial communities of the intensively cultivated greenhouse soils were particularly influenced by soil pH and EC. These findings therefore shed light on the soil microbial ecology of greenhouse cultivation, which should be helpful for devising effective management strategies to enhance soil microbial diversity and improving crop productivity.

  17. Building Theory at the Intersection of Ecological Sustainability and Strategic Management

    DEFF Research Database (Denmark)

    Borland, Helen; Ambrosini, Véronique; Lindgreen, Adam

    2016-01-01

    to develop a better understanding of the strategies that businesses may follow, depending on their managers’ assumptions about ecological sustainability. To develop innovative strategies for ecological sustainability, the dynamic capabilities framework needs to be extended. In particular, the sensing...... sustainability. Finally, this approach offers opportunities for managers and academics to identify, categorize, and exploit business strategies for ecological sustainability.......This article builds theory at the intersection of ecological sustainability and strategic management literature—specifically, in relation to dynamic capabilities literature. By combining industrial organization economics–based, resource-based, and dynamic capability–based views, it is possible...

  18. Quantitative plant ecology

    DEFF Research Database (Denmark)

    Damgaard, Christian

    2014-01-01

    This e-book is written in the Wolfram' CDF format (download free CDF player from Wolfram.com) The objective of this e-book is to introduce the population ecological concepts for measuring and predicting the ecological success of plant species. This will be done by focusing on the measurement...... and statistical modelling of plant species abundance and the relevant ecological processes that control species abundance. The focus on statistical modelling and likelihood function based methods also means that more algorithm based methods, e.g. ordination techniques and boosted regression tress...

  19. Complex adaptive systems ecology

    DEFF Research Database (Denmark)

    Sommerlund, Julie

    2003-01-01

    In the following, I will analyze two articles called Complex Adaptive Systems EcologyI & II (Molin & Molin, 1997 & 2000). The CASE-articles are some of the more quirkyarticles that have come out of the Molecular Microbial Ecology Group - a groupwhere I am currently making observational studies....... They are the result of acooperation between Søren Molin, professor in the group, and his brother, JanMolin, professor at Department of Organization and Industrial Sociology atCopenhagen Business School. The cooperation arises from the recognition that bothmicrobial ecology and sociology/organization theory works...

  20. Rural Mental Health Ecology

    DEFF Research Database (Denmark)

    Wilson, Rhonda L.; Wilson, G. Glenn; Usher, Kim

    2015-01-01

    The mental health of people in rural communities is influenced by the robustness of the mental health ecosystem within each community. Theoretical approaches such as social ecology and social capital are useful when applied to the practical context of promoting environmental conditions which...... maximise mental health helping capital to enhance resilience and reduce vulnerably as a buffer for mental illness. This paper explores the ecological conditions that affect the mental health and illness of people in rural communities. It proposes a new mental health social ecology framework that makes full...

  1. [Parasitism and ecological parasitology].

    Science.gov (United States)

    Balashov, Iu S

    2011-01-01

    Parasitism as one of the life modes is a general biological phenomenon and is a characteristic of all viruses, many taxa of bacteria, fungi, protists, metaphytes, and metazoans. Zooparasitology is focused on studies of parasitic animals, particularly, on their taxonomy, anatomy, life cycles, host-parasite relations, biocoenotic connections, and evolution. Ecological parasitology is a component of ecology, as the scientific study of the relation of living organisms with each other and their surroundings. In the present paper, critical analysis of the problems, main postulates, and terminology of the modern ecological parasitology is given.

  2. Integrating technologies for scalable ecology and conservation

    Directory of Open Access Journals (Sweden)

    David C. Marvin

    2016-07-01

    Full Text Available Integration of multiple technologies greatly increases the spatial and temporal scales over which ecological patterns and processes can be studied, and threats to protected ecosystems can be identified and mitigated. A range of technology options relevant to ecologists and conservation practitioners are described, including ways they can be linked to increase the dimensionality of data collection efforts. Remote sensing, ground-based, and data fusion technologies are broadly discussed in the context of ecological research and conservation efforts. Examples of technology integration across all of these domains are provided for large-scale protected area management and investigation of ecological dynamics. Most technologies are low-cost or open-source, and when deployed can reach economies of scale that reduce per-area costs dramatically. The large-scale, long-term data collection efforts presented here can generate new spatio-temporal understanding of threats faced by natural ecosystems and endangered species, leading to more effective conservation strategies.

  3. Interactions between Autophagy and Bacterial Toxins: Targets for Therapy?

    Directory of Open Access Journals (Sweden)

    Jacques Mathieu

    2015-08-01

    Full Text Available Autophagy is a physiological process involved in defense mechanisms for clearing intracellular bacteria. The autophagic pathway is finely regulated and bacterial toxins interact with this process in a complex manner. Bacterial toxins also interact significantly with many biochemical processes. Evaluations of the effects of bacterial toxins, such as endotoxins, pore-forming toxins and adenylate cyclases, on autophagy could support the development of new strategies for counteracting bacterial pathogenicity. Treatment strategies could focus on drugs that enhance autophagic processes to improve the clearance of intracellular bacteria. However, further in vivo studies are required to decipher the upregulation of autophagy and potential side effects limiting such approaches. The capacity of autophagy activation strategies to improve the outcome of antibiotic treatment should be investigated in the future.

  4. Interactions between Autophagy and Bacterial Toxins: Targets for Therapy?

    Science.gov (United States)

    Mathieu, Jacques

    2015-08-04

    Autophagy is a physiological process involved in defense mechanisms for clearing intracellular bacteria. The autophagic pathway is finely regulated and bacterial toxins interact with this process in a complex manner. Bacterial toxins also interact significantly with many biochemical processes. Evaluations of the effects of bacterial toxins, such as endotoxins, pore-forming toxins and adenylate cyclases, on autophagy could support the development of new strategies for counteracting bacterial pathogenicity. Treatment strategies could focus on drugs that enhance autophagic processes to improve the clearance of intracellular bacteria. However, further in vivo studies are required to decipher the upregulation of autophagy and potential side effects limiting such approaches. The capacity of autophagy activation strategies to improve the outcome of antibiotic treatment should be investigated in the future.

  5. Discussion of Development Strategy of Ecological Logistics Practice of Tourism Scenic Areas%旅游景区生态物流及其发展策略探讨

    Institute of Scientific and Technical Information of China (English)

    谢天慧

    2014-01-01

    阐述了旅游景区物流活动的内容及其对旅游业的推动作用,分析了生态物流的概念及内涵,对旅游景区生态物流发展现存的挑战进行了分析,提出了有针对性的旅游景区生态物流发展的策略。%In this paper, we analyzed the challenges in the current development of the ecological logistics practice in the tourism scenic areas and proposed correspondingly some effective countermeasures.

  6. [Using ecology thinking reconstructing traditional agronomy: role of production ecology].

    Science.gov (United States)

    Wang, Song-Liang

    2012-08-01

    Traditional agronomy, as a discipline or specialty, is originated from the reductionism thinking of neoteric experimental sciences and motivated by the great success of industrialized revolution, but loses the ensemble grasp of the relationships between agricultural organisms and their resources and environment, i.e., agroecosystem mechanism. Moreover, due to the excessively relying on exogenous fossil energy input and the monoculture with a few highly productive crop cultivars, the agricultural interior sustainability has unceasingly lost, making our mankind facing the double crises of grain security and food safety. Therefore, it is imperative to reconstruct the traditional agronomy and its educational system. In this paper, the author proposed to link traditional agronomy with ecology, establishing agroecology as the core subject and agroecosystem management as the core applied system, and in particular, establishing 'production ecology' to fill up the wide gap between the crop cultivation and farming system and the crop genetics and breeding, the two second grade disciplines under agronomy. Ideologically and methodologically, this proposal could provide disciplinary, scientific, and educational bases to authentically implement the strategy of sustainable development of agriculture.

  7. Ecological Provinces of Minnesota

    Data.gov (United States)

    Minnesota Department of Natural Resources — This coverage provides information for the first level of the Ecological Classification System. The boundaries of the polygons of this coverage were derived from...

  8. Ecological Subsections of Minnesota

    Data.gov (United States)

    Minnesota Department of Natural Resources — This coverage provides information for the third level of the Ecological Classification System. The boundaries of the polygons of this coverage were derived from...

  9. Market Squid Ecology Dataset

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This dataset contains ecological information collected on the major adult spawning and juvenile habitats of market squid off California and the US Pacific Northwest....

  10. Green Turtle Trophic Ecology

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — SWFSC is currently conducting a study of green sea turtle (Chelonia mydas) trophic ecology in the eastern Pacific. Tissue samples and stable carbon and stable...

  11. Ecological Sections of Minnesota

    Data.gov (United States)

    Minnesota Department of Natural Resources — This coverage provides information for the second level of the Ecological Classification System. The boundaries of the polygons of this coverage were derived from...

  12. Interfering with bacterial gossip

    DEFF Research Database (Denmark)

    Bjarnsholt, Thomas; Tolker-Nielsen, Tim; Givskov, Michael

    2011-01-01

    defense. Antibiotics exhibit a rather limited effect on biofilms. Furthermore, antibiotics have an ‘inherent obsolescence’ because they select for development of resistance. Bacterial infections with origin in bacterial biofilms have become a serious threat in developed countries. Pseudomonas aeruginosa...... that appropriately target bacteria in their relevant habitat with the aim of mitigating their destructive impact on patients. In this review we describe molecular mechanisms involved in “bacterial gossip” (more scientifically referred to as quorum sensing (QS) and c-di-GMP signaling), virulence, biofilm formation......, resistance and QS inhibition as future antimicrobial targets, in particular those that would work to minimize selection pressures for the development of resistant bacteria....

  13. Dynamics in artifact ecologies

    DEFF Research Database (Denmark)

    Bødker, Susanne; Klokmose, Clemens Nylandsted

    2012-01-01

    We increasingly interact with multiple interactive artifacts with overlapping capabilities during our daily activities. It has previously been shown that the use of an interactive artifact cannot be understood in isolation, but artifacts must be understood as part of an artifact ecology, where ar...... in artifact ecologies cannot be understood as static, instead they evolve dynamically over time. We provide activity theory-based concepts to explain these dynamics....

  14. Developments in numerical ecology

    Energy Technology Data Exchange (ETDEWEB)

    Legendre, P.; Legendre, L.

    1987-01-01

    From earlier ecological studies it has become apparent that simple univariate or bivariate statistics are often inappropriate, and that multivariate statistical analyses must be applied. Despite several difficulties arising from the application of multivariate methods, community ecology has acquired a mathematical framework, with three consequences: it can develop as an exact science; it can be applied operationally as a computer-assisted science to the solution of environmental problems; and it can exchange information with other disciplines using the language of mathematics.

  15. Indicators of Ecological Change

    Science.gov (United States)

    2005-03-03

    Wang et al. (2003) and earlier those of Chapra and Di Toro (1991). Wang et al. (2003) termed their approach the extreme value method and used it to...Thesis, Auburn University, Auburn, AL. 210 pp. Chapra , S. C., Di Toro, D. M., 1991. Delta method for estimating primary production, respiration, and...characteristics, The challenge in using ecological indicators is determining which of the numerous measures of ecological systems best characterize

  16. Ecological Perspectives in HCI

    DEFF Research Database (Denmark)

    Blevis, Eli; Bødker, Susanne; Flach, John;

    The aim of the workshop is to provide a forum for researchers and practitioners to discuss the present and future of ecological perspectives in HCI. The participants will reflect on the current uses and interpretations of “ecology” and related concepts in the field. The workshop will assess...... the potential of ecological perspectives in HCI for supporting rich and meaningful analysis, as well as innovative design, of interactive technologies in real-life contexts...

  17. Sraffa and ecological economics

    OpenAIRE

    Verger, Yoann

    2015-01-01

    References to Sraffa and to the neo-Ricardian school is something quite customary in ecological economics. By looking at contributions in this area since the beginning of ecological economics and at contributions on environmental problem from the neo-Ricardian school, we see that a connection between both school still has to be made. This connection should be articulated around the initial aim of Sraffa: to develop a new paradigm, competing against the neoclassical one. Only then it will be p...

  18. "One-size-fits-all"? Optimizing treatment duration for bacterial infections.

    Directory of Open Access Journals (Sweden)

    Patricia Geli

    Full Text Available Historically, antibiotic treatment guidelines have aimed to maximize treatment efficacy and minimize toxicity, but have not considered the evolution of antibiotic resistance. Optimizing the duration and dosing of treatment to minimize the duration of symptomatic infection and selection pressure for resistance simultaneously has the potential to extend the useful therapeutic life of these valuable life-saving drugs without compromising the interests of individual patients.Here, using mathematical models, we explore the theoretical basis for shorter durations of treatment courses, including a range of ecological dynamics of bacteria that cause infections or colonize hosts as commensals. We find that immunity is an important mediating factor in determining the need for long duration of treatment. When immunity to infection is expected, shorter durations that reduce the selection for resistance without interfering with successful clinical outcome are likely to be supported. Adjusting drug treatment strategies to account for the impact of the differences in the ecological niche occupied by commensal flora relative to invasive bacteria could be effective in delaying the spread of bacterial resistance.

  19. “One-Size-Fits-All”? Optimizing Treatment Duration for Bacterial Infections

    Science.gov (United States)

    Geli, Patricia; Laxminarayan, Ramanan; Dunne, Michael; Smith, David L.

    2012-01-01

    Historically, antibiotic treatment guidelines have aimed to maximize treatment efficacy and minimize toxicity, but have not considered the evolution of antibiotic resistance. Optimizing the duration and dosing of treatment to minimize the duration of symptomatic infection and selection pressure for resistance simultaneously has the potential to extend the useful therapeutic life of these valuable life-saving drugs without compromising the interests of individual patients. Here, using mathematical models, we explore the theoretical basis for shorter durations of treatment courses, including a range of ecological dynamics of bacteria that cause infections or colonize hosts as commensals. We find that immunity is an important mediating factor in determining the need for long duration of treatment. When immunity to infection is expected, shorter durations that reduce the selection for resistance without interfering with successful clinical outcome are likely to be supported. Adjusting drug treatment strategies to account for the impact of the differences in the ecological niche occupied by commensal flora relative to invasive bacteria could be effective in delaying the spread of bacterial resistance. PMID:22253798

  20. Plant-associated microbiomes in arid lands: diversity, ecology and biotechnological potential

    KAUST Repository

    Soussi, Asma

    2015-08-28

    Background: Aridification is a worldwide serious threat directly affecting agriculture and crop production. In arid and desert areas, it has been found that microbial diversity is huge, built of microorganisms able to cope with the environmental harsh conditions by developing adaptation strategies. Plants growing in arid lands or regions facing prolonged abiotic stresses such as water limitation and salt accumulation have also developed specific physiological and molecular stress responses allowing them to thrive under normally unfavorable conditions. Scope: Under such extreme selection pressures, special root-associated bacterial assemblages, endowed with capabilities of plant growth promotion (PGP) and extremophile traits, are selected by the plants. In this review, we provide a general overview on the microbial diversity in arid lands and deserts versus specific microbial assemblages associated with plants. The ecological drivers that shape this diversity, how plant-associated microbiomes are selected, and their biotechnological potential are discussed. Conclusions: Selection and recruitment of the plant associated bacterial assemblages is mediated by the combination of the bio-pedo-agroclimatic conditions and the plant species or varieties. Diversity and functional redundancy of these associated PGPR makes them very active in supporting plant improvement, health and resistance to drought, salt and related stresses. Implementing proper biotechnological applications of the arid and desert-adapted PGPR constitute the challenge to be raised.

  1. Bacterial Community Succession During in situ Uranium Bioremediation: Spatial Similarities Along Controlled Flow Paths

    Energy Technology Data Exchange (ETDEWEB)

    Hwang, Chiachi; Wu, Weimin; Gentry, Terry J.; Carley, Jack; Corbin, Gail A.; Carroll, Sue L.; Watson, David B.; Jardine, Phil M.; Zhou, Jizhong; Criddle, Craig S.; Fields, Matthew W.

    2009-05-22

    Bacterial community succession was investigated in a field-scale subsurface reactor formed by a series of wells that received weekly ethanol additions to re-circulating groundwater. Ethanol additions stimulated denitrification, metal reduction, sulfate reduction, and U(VI) reduction to sparingly soluble U(IV). Clone libraries of SSU rRNA gene sequences from groundwater samples enabled tracking of spatial and temporal changes over a 1.5 y period. Analyses showed that the communities changed in a manner consistent with geochemical variations that occurred along temporal and spatial scales. Canonical correspondence analysis revealed that the levels of nitrate, uranium, sulfide, sulfate, and ethanol strongly correlated with particular bacterial populations. As sulfate and U(VI) levels declined, sequences representative of sulfate-reducers and metal-reducers were detected at high levels. Ultimately, sequences associated with sulfate-reducing populations predominated, and sulfate levels declined as U(VI) remained at low levels. When engineering controls were compared to the population variation via canonical ordination, changes could be related to dissolved oxygen control and ethanol addition. The data also indicated that the indigenous populations responded differently to stimulation for bio-reduction; however, the two bio-stimulated communities became more similar after different transitions in an idiosyncratic manner. The strong associations between particular environmental variables and certain populations provide insight into the establishment of practical and successful remediation strategies in radionuclide-contaminated environments with respect to engineering controls and microbial ecology.

  2. Antitumor polyketide biosynthesis by an uncultivated bacterial symbiont of the marine sponge Theonella swinhoei.

    Science.gov (United States)

    Piel, Jörn; Hui, Dequan; Wen, Gaiping; Butzke, Daniel; Platzer, Matthias; Fusetani, Nobuhiro; Matsunaga, Shigeki

    2004-11-16

    Bacterial symbionts have long been suspected to be the true producers of many drug candidates isolated from marine invertebrates. Sponges, the most important marine source of biologically active natural products, have been frequently hypothesized to contain compounds of bacterial origin. This symbiont hypothesis, however, remained unproven because of a general inability to cultivate the suspected producers. However, we have recently identified an uncultured Pseudomonas sp. symbiont as the most likely producer of the defensive antitumor polyketide pederin in Paederus fuscipes beetles by cloning the putative biosynthesis genes. Here we report closely related genes isolated from the highly complex metagenome of the marine sponge Theonella swinhoei, which is the source of the onnamides and theopederins, a group of polyketides that structurally resemble pederin. Sequence features of the isolated genes clearly indicate that it belongs to a prokaryotic genome and should be responsible for the biosynthesis of almost the entire portion of the polyketide structure that is correlated with antitumor activity. Besides providing further proof for the role of the related beetle symbiont-derived genes, these findings raise intriguing ecological and evolutionary questions and have important general implications for the sustainable production of otherwise inaccessible marine drugs by using biotechnological strategies.

  3. Endophytic bacterial diversity in the phyllosphere of Amazon Paullinia cupana associated with asymptomatic and symptomatic anthracnose.

    Science.gov (United States)

    Bogas, Andréa Cristina; Ferreira, Almir José; Araújo, Welington Luiz; Astolfi-Filho, Spartaco; Kitajima, Elliot Watanabe; Lacava, Paulo Teixeira; Azevedo, João Lúcio

    2015-01-01

    Endophytes colonize an ecological niche similar to that of phytopathogens, which make them candidate for disease suppression. Anthracnose is a disease caused by Colletotrichum spp., a phytopathogen that can infect guarana (Paullinia cupana), an important commercial crop in the Brazilian Amazon. We investigated the diversity of endophytic bacteria inhabiting the phyllosphere of asymptomatic and symptomatic anthracnose guarana plants. The PCR-denaturation gradient gel electrophoresis (PCR-DGGE) fingerprints revealed differences in the structure of the evaluated communities. Detailed analysis of endophytic bacteria composition using culture-dependent and 16S rRNA clone libraries revealed the presence of Firmicutes, Proteobacteria, Actinobacteria, Bacteroidetes, and Acidobacteria phyla. Firmicutes comprised the majority of isolates in asymptomatic plants (2.40E(-4)). However, cloning and sequencing of 16S rRNA revealed differences at the genus level for Neisseria (1.4E(-4)), Haemophilus (2.1E(-3)) and Arsenophonus (3.6E(-5)) in asymptomatic plants, Aquicella (3.5E(-3)) in symptomatic anthracnose plants, and Pseudomonas (1.1E(-3)), which was mainly identified in asymptomatic plants. In cross-comparisons of the endophytic bacterial communities as a whole, symptomatic anthracnose plants contained higher diversity, as reflected in the Shannon-Weaver and Simpson indices estimation (P anthracnose can restructure endophytic bacterial communities by selecting certain strains in the phyllosphere of P. cupana. The understanding of these interactions is important for the development of strategies of biocontrol for Colletotrichum.

  4. Bacterial Meningitis in Infants

    Directory of Open Access Journals (Sweden)

    J Gordon Millichap

    2004-04-01

    Full Text Available A retrospective study of 80 infantile patients (ages 30-365 days; 47 male, 33 female with culture-proven bacterial meningitis seen over a 16 year period (1986-2001 is reported from Taiwan.

  5. Bacterial intermediate filaments

    DEFF Research Database (Denmark)

    Charbon, Godefroid; Cabeen, M.; Jacobs-Wagner, C.

    2009-01-01

    Crescentin, which is the founding member of a rapidly growing family of bacterial cytoskeletal proteins, was previously proposed to resemble eukaryotic intermediate filament (IF) proteins based on structural prediction and in vitro polymerization properties. Here, we demonstrate that crescentin...

  6. Bacterial toxins as immunomodulators.

    Science.gov (United States)

    Donaldson, David S; Williams, Neil A

    2009-01-01

    Bacterial toxins are the causative agent at pathology in a variety of diseases. Although not always the primary target of these toxins, many have been shown to have potent immunomodulatory effects, for example, inducing immune responses to co-administered antigens and suppressing activation of immune cells. These abilities of bacterial toxins can be harnessed and used in a therapeutic manner, such as in vaccination or the treatment of autoimmune diseases. Furthermore, the ability of toxins to gain entry to cells can be used in novel bacterial toxin based immuno-therapies in order to deliver antigens into MHC Class I processing pathways. Whether the immunomodulatory properties of these toxins arose in order to enhance bacterial survival within hosts, to aid spread within the population or is pure serendipity, it is interesting to think that these same toxins potentially hold the key to preventing or treating human disease.

  7. Bacterial Wound Culture

    Science.gov (United States)

    ... and services. Advertising & Sponsorship: Policy | Opportunities Bacterial Wound Culture Share this page: Was this page helpful? Also known as: Aerobic Wound Culture; Anaerobic Wound Culture Formal name: Culture, wound Related ...

  8. Dequalinium for bacterial vaginosis.

    Science.gov (United States)

    2017-05-01

    Bacterial vaginosis is an infection characterised by overgrowth of anaerobic bacteria in the vagina with an accompanying loss of lactobacilli, and is thought to be the most common cause of abnormal vaginal discharge in women of child-bearing age.(1) Standard treatment for symptomatic bacterial vaginosis consists of a short course of an oral or topical antibiotic.(2) Dequalinium, a topical antiseptic agent, has been available for many years as a treatment for oral infections.(3) A new formulation, dequalinium 10mg vaginal tablets (Fluomizin-Kora Healthcare), was licensed in the UK in June 2015 for the treatment of bacterial vaginosis.(4) Here, we review evidence for the effectiveness and safety of dequalinium vaginal tablets in the management of bacterial vaginosis. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/.

  9. Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations.

    Science.gov (United States)

    Cordero, Otto X; Ventouras, Laure-Anne; DeLong, Edward F; Polz, Martin F

    2012-12-01

    A common strategy among microbes living in iron-limited environments is the secretion of siderophores, which can bind poorly soluble iron and make it available to cells via active transport mechanisms. Such siderophore-iron complexes can be thought of as public goods that can be exploited by local communities and drive diversification, for example by the evolution of "cheating." However, it is unclear whether bacterial populations in the environment form stable enough communities such that social interactions significantly impact evolutionary dynamics. Here we show that public good games drive the evolution of iron acquisition strategies in wild populations of marine bacteria. We found that within nonclonal but ecologically cohesive genotypic clusters of closely related Vibrionaceae, only an intermediate percentage of genotypes are able to produce siderophores. Nonproducers within these clusters exhibited selective loss of siderophore biosynthetic pathways, whereas siderophore transport mechanisms were retained, suggesting that these nonproducers can act as cheaters that benefit from siderophore producers in their local environment. In support of this hypothesis, these nonproducers in iron-limited media suffer a significant decrease in growth, which can be alleviated by siderophores, presumably owing to the retention of transport mechanisms. Moreover, using ecological data of resource partitioning, we found that cheating coevolves with the ecological specialization toward association with larger particles in the water column, suggesting that these can harbor stable enough communities for dependencies among organisms to evolve.

  10. Benefits of ecological engineering practices

    NARCIS (Netherlands)

    Brüll, A.; Van Bohemen, H.; Costanza, R.; Mitsch, W.J.

    2011-01-01

    With the intention to further promote the field of ecological engineering and the solutions it provides, a workshop on “Benefits of Ecological Engineering Practices” was held 3 Dec 2009. It was conducted by the International Ecological Engineering Society in Paris at the conference “Ecological Engin

  11. Urban ecology and its Importance

    Institute of Scientific and Technical Information of China (English)

    艾玛诺

    2015-01-01

    With the development of ecological problems are becoming more and more serious people pay more and more attention on ecological city,, this paper analyzes the sources of city ecological problems from the angle of the city planning, to explore the feasible measures to solve or al eviate the increasingly serious ecological problems.

  12. Bacterial proteases and virulence

    DEFF Research Database (Denmark)

    Frees, Dorte; Brøndsted, Lone; Ingmer, Hanne

    2013-01-01

    Bacterial pathogens rely on proteolysis for variety of purposes during the infection process. In the cytosol, the main proteolytic players are the conserved Clp and Lon proteases that directly contribute to virulence through the timely degradation of virulence regulators and indirectly by providing....... These extracellular proteases are activated in complex cascades involving auto-processing and proteolytic maturation. Thus, proteolysis has been adopted by bacterial pathogens at multiple levels to ensure the success of the pathogen in contact with the human host....

  13. The Ecological Role of Type Three Secretion Systems in the Interaction of Bacteria with Fungi in Soil and Related Habitats Is Diverse and Context-Dependent

    Science.gov (United States)

    Nazir, Rashid; Mazurier, Sylvie; Yang, Pu; Lemanceau, Philippe; van Elsas, Jan Dirk

    2017-01-01

    Bacteria and fungi constitute important organisms in many ecosystems, in particular terrestrial ones. Both organismal groups contribute significantly to biogeochemical cycling processes. Ecological theory postulates that bacteria capable of receiving benefits from host fungi are likely to evolve efficient association strategies. The purpose of this review is to examine the mechanisms that underpin the bacterial interactions with fungi in soil and other systems, with special focus on the type III secretion system (T3SS). Starting with a brief description of the versatility of the T3SS as an interaction system with diverse eukaryotic hosts, we subsequently examine the recent advances made in our understanding of its contribution to interactions with soil fungi. The analysis used data sets ranging from circumstantial evidence to gene-knockout-based experimental data. The initial finding that the abundance of T3SSs in microbiomes is often enhanced in fungal-affected habitats like the mycosphere and the mycorrhizosphere is now substantiated with in-depth knowledge of the specific systems involved. Different fungal–interactive bacteria, in positive or negative associations with partner fungi, harbor and express T3SSs, with different ecological outcomes. In some particular cases, bacterial T3SSs have been shown to modulate the physiology of its fungal partner, affecting its ecological characteristics and consequently shaping its own habitat. Overall, the analyses of the collective data set revealed that diverse T3SSs have assumed diverse roles in the interactions of bacteria with host fungi, as driven by ecological and evolutionary niche requirements. PMID:28197129

  14. In Search of Ecological Ethics

    Directory of Open Access Journals (Sweden)

    Catarina Jahnel de Oliveira

    2013-12-01

    Full Text Available In the scope of social science, studies dealing with environmental issues have gained prominence in recent years. Given the intense and profound changes the capitalist system has brought to society, culmina ng in the current environmental crisis, science and philosophy have sought ways to overcome the contradic s found in our current ethical model. In this sense, the objetive of this paper is, from a review of the related literature, to present ecological ethics as an alternative that points the way to the formula of strategies aimed at sustainability, since this ethical discourse, broaching issues such as anthropocentrism and moral competence, leads to a redefinition of the relationship between humans and their environment

  15. [Diagnosis of bacterial vaginosis].

    Science.gov (United States)

    Djukić, Slobodanka; Ćirković, Ivana; Arsić, Biljana; Garalejić, Eliana

    2013-01-01

    Bacterial vaginosis is a common, complex clinical syndrome characterized by alterations in the normal vaginal flora. When symptomatic, it is associated with a malodorous vaginal discharge and on occasion vaginal burning or itching. Under normal conditions, lactobacilli constitute 95% of the bacteria in the vagina. Bacterial vaginosis is associated with severe reduction or absence of the normal H2O2-producing lactobacilli and overgrowth of anaerobic bacteria and Gardnerella vaginalis, Atopobium vaginae, Mycoplasma hominis and Mobiluncus species. Most types of infectious disease are diagnosed by culture, by isolating an antigen or RNA/DNA from the microbe, or by serodiagnosis to determine the presence of antibodies to the microbe. Therefore, demonstration of the presence of an infectious agent is often a necessary criterion for the diagnosis of the disease. This is not the case for bacterial vaginosis, since the ultimate cause of the disease is not yet known. There are a variety of methods for the diagnosis of bacterial vaginosis but no method can at present be regarded as the best. Diagnosing bacterial vaginosis has long been based on the clinical criteria of Amsel, whereby three of four defined criteria must be satisfied. Nugent's scoring system has been further developed and includes validation of the categories of observable bacteria structures. Up-to-date molecular tests are introduced, and better understanding of vaginal microbiome, a clear definition for bacterial vaginosis, and short-term and long-term fluctuations in vaginal microflora will help to better define molecular tests within the broader clinical context.

  16. Yes! There are resilient generalizations (or "laws") in ecology.

    Science.gov (United States)

    Linquist, Stefan; Gregory, T Ryan; Elliott, Tyler A; Saylor, Brent; Kremer, Stefan C; Cottenie, Karl

    2016-06-01

    ABSTRACT It is often argued that ecological communities admit of no useful generalizations or "laws" because these systems are especially prone to contingent historical events. Detractors respond that this argument assumes an overly stringent definition of laws of nature. Under a more relaxed conception, it is argued that ecological laws emerge at the level of communities and elsewhere. A brief review of this debate reveals an issue with deep philosophical roots that is unlikely to be resolved by a better understanding of generalizations in ecology. We therefore propose a strategy for transforming the conceptual question about the nature of ecological laws into a set of empirically tractable hypotheses about the relative re- silience of ecological generalizations across three dimensions: taxonomy, habitat type, and scale. These hypotheses are tested using a survey of 240 meta-analyses in ecology. Our central finding is that generalizations in community ecology are just as prevalent and as resilient as those in population or ecosystem ecology. These findings should help to establish community ecology as a generality-seeking science as opposed to a science of case studies. It also supports the capacity for ecologists, working at any of the three levels, to inform matters of public policy.

  17. Bacterial Acclimation Inside an Aqueous Battery.

    Directory of Open Access Journals (Sweden)

    Dexian Dong

    Full Text Available Specific environmental stresses may lead to induced genomic instability in bacteria, generating beneficial mutants and potentially accelerating the breeding of industrial microorganisms. The environmental stresses inside the aqueous battery may be derived from such conditions as ion shuttle, pH gradient, free radical reaction and electric field. In most industrial and medical applications, electric fields and direct currents are used to kill bacteria and yeast. However, the present study focused on increasing bacterial survival inside an operating battery. Using a bacterial acclimation strategy, both Escherichia coli and Bacillus subtilis were acclimated for 10 battery operation cycles and survived in the battery for over 3 days. The acclimated bacteria changed in cell shape, growth rate and colony color. Further analysis indicated that electrolyte concentration could be one of the major factors determining bacterial survival inside an aqueous battery. The acclimation process significantly improved the viability of both bacteria E. coli and B. subtilis. The viability of acclimated strains was not affected under battery cycle conditions of 0.18-0.80 mA cm(-2 and 1.4-2.1 V. Bacterial addition within 1.0×10(10 cells mL(-1 did not significantly affect battery performance. Because the environmental stress inside the aqueous battery is specific, the use of this battery acclimation strategy may be of great potential for the breeding of industrial microorganisms.

  18. Bacterial Acclimation Inside an Aqueous Battery.

    Science.gov (United States)

    Dong, Dexian; Chen, Baoling; Chen, P

    2015-01-01

    Specific environmental stresses may lead to induced genomic instability in bacteria, generating beneficial mutants and potentially accelerating the breeding of industrial microorganisms. The environmental stresses inside the aqueous battery may be derived from such conditions as ion shuttle, pH gradient, free radical reaction and electric field. In most industrial and medical applications, electric fields and direct currents are used to kill bacteria and yeast. However, the present study focused on increasing bacterial survival inside an operating battery. Using a bacterial acclimation strategy, both Escherichia coli and Bacillus subtilis were acclimated for 10 battery operation cycles and survived in the battery for over 3 days. The acclimated bacteria changed in cell shape, growth rate and colony color. Further analysis indicated that electrolyte concentration could be one of the major factors determining bacterial survival inside an aqueous battery. The acclimation process significantly improved the viability of both bacteria E. coli and B. subtilis. The viability of acclimated strains was not affected under battery cycle conditions of 0.18-0.80 mA cm(-2) and 1.4-2.1 V. Bacterial addition within 1.0×10(10) cells mL(-1) did not significantly affect battery performance. Because the environmental stress inside the aqueous battery is specific, the use of this battery acclimation strategy may be of great potential for the breeding of industrial microorganisms.

  19. Benefits of ecological engineering practices

    OpenAIRE

    Brüll, A.; Van Bohemen, H.; Costanza, R.; Mitsch, W.J.

    2011-01-01

    With the intention to further promote the field of ecological engineering and the solutions it provides, a workshop on “Benefits of Ecological Engineering Practices” was held 3 Dec 2009. It was conducted by the International Ecological Engineering Society in Paris at the conference “Ecological Engineering: from Concepts to Application” organized by the Ecological Engineering Applications Group GAIE. This paper presents the results of the workshop related to three key questions: (1) what are t...

  20. Archaeal amd bacterial community composition of a pristine coastal aquifer in Doñana National Park, Spain

    OpenAIRE

    López Archilla, Ana Isabel; Moreira, David; Velasco, Sergio; López García, Purificación

    2007-01-01

    This is an electronic version of an article published in Aquatic Microbial Ecology. López Archilla, A.I. et al. Archaeal amd bacterial community composition of a pristine coastal aquifer in Doñana National Park, Spain. Aquatic Microbial Ecology 47 (2007): 123-139

  1. Antibiotics promote aggregation within aquatic bacterial communities

    Directory of Open Access Journals (Sweden)

    Gianluca eCorno

    2014-07-01

    Full Text Available The release of antibiotics (AB into the environment poses several threats for human health due to potential development of ABresistant natural bacteria. Even though the use of low-dose antibiotics has been promoted in health care and farming, significant amounts of AB are observed in aquatic environments. Knowledge on the impact of AB on natural bacterial communities is missing both in terms of spread and evolution of resistance mechanisms, and of modifications of community composition and productivity. New approaches are required to study the response of microbial communities rather than individual resistance genes. In this study a chemostat-based experiment with 4 coexisting bacterial strains has been performed to mimicking the response of a freshwater bacterial community to the presence of antibiotics in low and high doses. Bacterial abundance rapidly decreased by 75% in the presence of AB, independently of their concentration, and remained constant until the end of the experiment. The bacterial community was mainly dominated by Aeromonas hydrophila and Brevundimonas intermedia while the other two strains, Micrococcus luteus and Rhodococcus sp. never exceed 10%. Interestingly, the bacterial strains, which were isolated at the end of the experiment, were not AB-resistant, while reassembled communities composed of the 4 strains, isolated from treatments under AB stress, significantly raised their performance (growth rate, abundance in the presence of AB compared to the communities reassembled with strains isolated from the treatment without AB. By investigating the phenotypic adaptations of the communities subjected to the different treatments, we found that the presence of AB significantly increased co-aggregation by 5-6 fold.These results represent the first observation of co-aggregation as a successful strategy of AB resistance based on phenotype in aquatic bacterial communities, and can represent a fundamental step in the understanding of

  2. Bacterial oligopeptide-binding proteins.

    Science.gov (United States)

    Monnet, V

    2003-10-01

    This review focuses on bacterial oligopeptide-binding proteins, which form part of the oligopeptide transport system belonging to the ATP-binding cassette family of transporters. Depending on the bacterial species, these binding proteins (OppA) capture peptides ranging in size from 2 to 18 amino acids from the environment and pass them on to the other components of the oligopeptide transport system for internalisation. Bacteria have developed several strategies to produce these binding proteins, which are periplasmic in Gram- bacteria and membrane-anchored in Gram+, with a higher stoichiometry (probably necessary for efficient transport) than the other components in the transport system. The expression of OppA-encoding genes is clearly modulated by external factors, especially nitrogen compounds, but the mechanisms of regulation are not always clear. The best-understood roles played by OppAs are internalisation of peptides for nutrition and recycling of muropeptides. It has, however, recently become clear that OppAs are also involved in sensing the external medium via specific or non-specific peptides.

  3. Antigenic Variation in Bacterial Pathogens.

    Science.gov (United States)

    Palmer, Guy H; Bankhead, Troy; Seifert, H Steven

    2016-02-01

    Antigenic variation is a strategy used by a broad diversity of microbial pathogens to persist within the mammalian host. Whereas viruses make use of a minimal proofreading capacity combined with large amounts of progeny to use random mutation for variant generation, antigenically variant bacteria have evolved mechanisms which use a stable genome, which aids in protecting the fitness of the progeny. Here, three well-characterized and highly antigenically variant bacterial pathogens are discussed: Anaplasma, Borrelia, and Neisseria. These three pathogens display a variety of mechanisms used to create the structural and antigenic variation needed for immune escape and long-term persistence. Intrahost antigenic variation is the focus; however, the role of these immune escape mechanisms at the population level is also presented.

  4. Geo-Chip analysis reveals reduced functional diversity of the bacterial community at a dumping site for dredged Elbe sediment.

    Science.gov (United States)

    Störmer, Rebecca; Wichels, Antje; Gerdts, Gunnar

    2013-12-15

    The dumping of dredged sediments represents a major stressor for coastal ecosystems. The impact on the ecosystem function is determined by its complexity not easy to assess. In the present study, we evaluated the potential of bacterial community analyses to act as ecological indicators in environmental monitoring programmes. We investigated the functional structure of bacterial communities, applying functional gene arrays (GeoChip4.2). The relationship between functional genes and environmental factors was analysed using distance-based multivariate multiple regression. Apparently, both the function and structure of the bacterial communities are impacted by dumping activities. The bacterial community at the dumping centre displayed a significant reduction of its entire functional diversity compared with that found at a reference site. DDX compounds separated bacterial communities of the dumping site from those of un-impacted sites. Thus, bacterial community analyses show great potential as ecological indicators in environmental monitoring.

  5. Urban sound ecologies

    Directory of Open Access Journals (Sweden)

    Sanne Krogh Groth

    2013-12-01

    Full Text Available Within recent years, there has been a renewed focus on sound in urban environments. From sound installations in public space to sound festivals in alternative settings, we find a common interest in sound art relating to the urban environment. Artworks or interventions presented in such contexts share the characteristics of site specificity. However, this article will consider the artwork in a broader context by re-examining how sound installations relate to the urban environment. For that purpose, this article brings together ecology terms from acoustic ecology of the sound theories of the 1970s while developing them into recent definitions of ecology in urban studies. Finally, we unfold our framing of urban sound ecologies with three case analyses: a sound intervention in Berlin, a symphony for wind instruments in Copenhagen and a video walk in a former railway station in Kassel. The article concludes that the ways in which recent sound installations work with urban ecologies vary. While two of the examples blend into the urban environment, the other transfers the concert format and its mode of listening to urban space. Last, and in accordance with recent soundscape research, we point to how artists working with new information and media technologies create inventive ways of inserting sound and image into urban environments.

  6. CHARACTERISTICS AND CONSTRUCTION OF LANDSCAPE???ECOLOGY IN ARID REGIONS

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    This paper analyzes the characteristics of the landscape structures and landacape ecological processes in arid regions of China. Landscape structure is simplicity and homogeneity with the pattern of desert-oasis-river and canal corridor. The spatial distribution of landscape heterogeneity mosaics is relatively dependent on water resources. In arid regions,the landscape changes rapidly and extensively because of the sensitive landscape ecosystems and fragile regional ecosystems.For the sustainable development of arid regions, the theories and methods for the eco-environmental construction and the strategies of ecological construction in the arid regions were proposed in the view of landscape ecology. Keynote subjects of landscape ecology were also discussed. The paper points out that protecting and increasing landscape diversity and heterogeneity are critical to control ecological safety in arid regions.

  7. Batch medication of intestinal infections in nursery pigs—A randomised clinical trial on the efficacy of treatment strategy, type of antibiotic and bacterial load on average daily weight gain

    DEFF Research Database (Denmark)

    Weber, Nicolai Rosager; Pedersen, Ken Steen; Hansen, Christian Fink;

    2017-01-01

    after weaning) on average daily weight gain (ADG); (2) to compare the effect of treatment with doxycycline or tylosine on diarrhoea prevalence, pathogenic bacterial load, and ADG; (3) to evaluate PCR testing of faecal pen floor samples as a diagnostic tool for determining the optimal time of treatment...... difference (p = 0.04) of mean diarrhoea prevalence on day 21 of the study between pens treated with tylosine (0.254, 95% CI: 0.184–0.324), and doxycycline (0.167, 95% CI: 0.124–0.210). The type of antibiotic compound was not found to have a significant effect on ADG (p = 0.209). (3) Pigs starting treatment...... was achieved when treatment was initiated 14 days after weaning in pens where intestinal pathogens were detected. Doxycycline was more effective in reducing diarrhoea and LI excretion levels than treatment with tylosine....

  8. The Strategy Of Ecological Design Of Commercial Buildings Based On The Atrium Type In Hot Summer And Cold Winter Area%基于商业建筑中庭类型的生态设计策略探讨--以夏热冬冷地区为例

    Institute of Scientific and Technical Information of China (English)

    刘宏成; 向俊米

    2016-01-01

    Take the commercial buildings in hot summer and cold winter area as examples, based on the "passive priority" principle ,the article discuss diferent atrium types toward the use of layout, the natural ventilation and lighting and shading ecological strategies,in order to improve the indoor environment of commercial buildings and reduce energy consumption.%本文以夏热冬冷地区的商业建筑为例,以“被动优先”为原则,探讨不同中庭类型的朝向布局、自然采光通风与遮阳等生态策略的运用,以达到改善商业建筑室内环境与减少能源消耗的目的。

  9. Water microbiology. Bacterial pathogens and water.

    Science.gov (United States)

    Cabral, João P S

    2010-10-01

    Water is essential to life, but many people do not have access to clean and safe drinking water and many die of waterborne bacterial infections. In this review a general characterization of the most important bacterial diseases transmitted through water-cholera, typhoid fever and bacillary dysentery-is presented, focusing on the biology and ecology of the causal agents and on the diseases' characteristics and their life cycles in the environment. The importance of pathogenic Escherichia coli strains and emerging pathogens in drinking water-transmitted diseases is also briefly discussed. Microbiological water analysis is mainly based on the concept of fecal indicator bacteria. The main bacteria present in human and animal feces (focusing on their behavior in their hosts and in the environment) and the most important fecal indicator bacteria are presented and discussed (focusing on the advantages and limitations of their use as markers). Important sources of bacterial fecal pollution of environmental waters are also briefly indicated. In the last topic it is discussed which indicators of fecal pollution should be used in current drinking water microbiological analysis. It was concluded that safe drinking water for all is one of the major challenges of the 21st century and that microbiological control of drinking water should be the norm everywhere. Routine basic microbiological analysis of drinking water should be carried out by assaying the presence of Escherichia coli by culture methods. Whenever financial resources are available, fecal coliform determinations should be complemented with the quantification of enterococci. More studies are needed in order to check if ammonia is reliable for a preliminary screening for emergency fecal pollution outbreaks. Financial resources should be devoted to a better understanding of the ecology and behavior of human and animal fecal bacteria in environmental waters.

  10. Water Microbiology. Bacterial Pathogens and Water

    Directory of Open Access Journals (Sweden)

    João P. S. Cabral

    2010-10-01

    Full Text Available Water is essential to life, but many people do not have access to clean and safe drinking water and many die of waterborne bacterial infections. In this review a general characterization of the most important bacterial diseases transmitted through water—cholera, typhoid fever and bacillary dysentery—is presented, focusing on the biology and ecology of the causal agents and on the diseases’ characteristics and their life cycles in the environment. The importance of pathogenic Escherichia coli strains and emerging pathogens in drinking water-transmitted diseases is also briefly discussed. Microbiological water analysis is mainly based on the concept of fecal indicator bacteria. The main bacteria present in human and animal feces (focusing on their behavior in their hosts and in the environment and the most important fecal indicator bacteria are presented and discussed (focusing on the advantages and limitations of their use as markers. Important sources of bacterial fecal pollution of environmental waters are also briefly indicated. In the last topic it is discussed which indicators of fecal pollution should be used in current drinking water microbiological analysis. It was concluded that safe drinking water for all is one of the major challenges of the 21st century and that microbiological control of drinking water should be the norm everywhere. Routine basic microbiological analysis of drinking water should be carried out by assaying the presence of Escherichia coli by culture methods. Whenever financial resources are available, fecal coliform determinations should be complemented with the quantification of enterococci. More studies are needed in order to check if ammonia is reliable for a preliminary screening for emergency fecal pollution outbreaks. Financial resources should be devoted to a better understanding of the ecology and behavior of human and animal fecal bacteria in environmental waters.

  11. ECOLOGICAL MARKETING – THE MAIN ELEMENT OF ENTERPRISES ECOLOGICAL POLITICS

    Directory of Open Access Journals (Sweden)

    N.R. Oganesyan

    2009-12-01

    Full Text Available In modern market conditions ecological marketing becomes more significant for formation and realization of functions of an ecological policy of the industrial enterprise. It is caused by increasing responsibility of manufacturers before consumers and society. In this article authors consider a role of ecological marketing, and also the factors influence forming and developing in the general administrative structure of the enterprise. Distinctions between principles of the general and ecological marketing, and also features of ecological marketing in the enterprise general system of marketing concepts are highlighted in this article. Here is specified the role of ecological marketing in reproduction process.

  12. Biodiversity in Benthic Ecology

    DEFF Research Database (Denmark)

    Friberg, Nikolai; Carl, J. D.

    Foreword: This proceeding is based on a set of papers presented at the second Nordic Benthological Meeting held in Silkeborg, November 13-14, 1997. The main theme of the meeting was biodiversity in benthic ecology and the majority of contributions touch on this subject. In addition, the proceeding...... contains papers which cover other themes thus continuing with the spirit of the meetings in the Nordic Benthological Society (NORBS) by being an open forum for exchanging knowledge on all aspects of benthic ecology. Overall, we feel the proceeding contains a wide selection of very interesting papers...... representing the state-of-the-art of benthic ecology research within, and to a lesser degree, outside the Nordic countries. We wish to thank all the authors for their inspirational contributions to the proceeding, but we feel that a special thanks is due to the invited speakers for their readiness to produce...

  13. Ecological recovery in ERA

    DEFF Research Database (Denmark)

    EFSA Scientific Committee (Scientific Committee); Topping, Christopher John

    2016-01-01

    recognises the importance of more integrated ERAs considering both the local and landscape scales, as well as the possible co-occurrence of multiple potential stressors that fall under the remit of EFSA, which are important when addressing ecological recovery. In this scientific opinion, the Scientific...... ecological recovery for any assessed products, and invasive alien species that are harmful for plant health. This framework proposes an integrative approach based on well-defined specific protection goals, scientific knowledge derived by means of experimentation, modelling and monitoring, and the selection...... Committee gathered scientific knowledge on the potential for the recovery of non-target organisms for the further development of ERA. Current EFSA guidance documents and opinions were reviewed on how ecological recovery is addressed in ERA schemes. In addition, this scientific opinion is based on expert...

  14. Ecological city planning

    Directory of Open Access Journals (Sweden)

    Salvador Rueda

    2013-07-01

    Full Text Available A territory, a city, a neighbourhood are all ecosystems; a mixture of chemico-physical and organic elements related to each other. That which defines an ecological system is the set of rules and characteristics which condition its relationships, and its duration in time is guaranteed by its efficiency and internal organization which applied to the city is translated in the reduction of the use of natural resources and in the increase of social organization. To increase the efficiency of the urban systems is the necessary condition for the formulation of ecological city planning favouring the maximum liveability of sites. Liveability is directly correlated to the optimization of numerous elements (public space, equipment, services, building techniques, innovative technology, social cohesion, biodiversity. To carry out such objectives, ecological city planning proposes a new model of town planning on three levels (subsoil, ground level, and upper level.

  15. Coevolutionary ecological economics

    Energy Technology Data Exchange (ETDEWEB)

    Kallis, Giorgos [ICREA Researcher, ICTA, Universidad Autonoma de Barcelona, ETSE, QC/3095, 08193 Bellatera, Barcelona (Spain); Norgaard, Richard B. [Energy and Resources Group, University of California at Berkeley, 310 Barrows Hall, Berkeley, CA, 94720-3050 (United States)

    2010-02-15

    This paper maps a coevolutionary research agenda for ecological economics. At an epistemological level coevolution offers a powerful logic for transcending environmental and social determinisms and developing a cross-disciplinary approach in the study of socio-ecological systems. We identify four consistent stories emerging out of coevolutionary studies in ecological economics, concerning: environmental degradation and development failure in peripheral regions; the lock-in of unsustainable production-consumption patterns; the vicious cycle between human efforts to control undesirable micro-organisms and the evolution of these organisms; and the adaptive advantages of other-regarding, cooperative behaviors and institutions. We identify challenges in the conceptualization of coevolutionary relationships in relation to: the interaction between different hierarchical levels of evolution; the role of space and social power; uneven rates of change and crises. We conclude with the political implications of a coevolutionary perspective based on the premises of pragmatism. (author)

  16. The bacterial lipocalins.

    Science.gov (United States)

    Bishop, R E

    2000-10-18

    The lipocalins were once regarded as a eukaryotic protein family, but new members have been recently discovered in bacteria. The first bacterial lipocalin (Blc) was identified in Escherichia coli as an outer membrane lipoprotein expressed under conditions of environmental stress. Blc is distinguished from most lipocalins by the absence of intramolecular disulfide bonds, but the presence of a membrane anchor is shared with two of its closest homologues, apolipoprotein D and lazarillo. Several common features of the membrane-anchored lipocalins suggest that each may play an important role in membrane biogenesis and repair. Additionally, Blc proteins are implicated in the dissemination of antibiotic resistance genes and in the activation of immunity. Recent genome sequencing efforts reveal the existence of at least 20 bacterial lipocalins. The lipocalins appear to have originated in Gram-negative bacteria and were probably transferred horizontally to eukaryotes from the endosymbiotic alpha-proteobacterial ancestor of the mitochondrion. The genome sequences also reveal that some bacterial lipocalins exhibit disulfide bonds and alternative modes of subcellular localization, which include targeting to the periplasmic space, the cytoplasmic membrane, and the cytosol. The relationships between bacterial lipocalin structure and function further illuminate the common biochemistry of bacterial and eukaryotic cells.

  17. Recent advances in primate nutritional ecology.

    Science.gov (United States)

    Righini, Nicoletta

    2017-04-01

    Nutritional ecology seeks to explain, in an ecological and evolutionary context, how individuals choose, acquire, and process food to satisfy their nutritional requirements. Historically, studies of primate feeding ecology have focused on characterizing diets in terms of the botanical composition of the plants consumed. Further, dietary studies have demonstrated how patch and food choice in relation to time spent foraging and feeding are influenced by the spatial and temporal distribution of resources and by social factors such as feeding competition, dominance, or partner preferences. From a nutritional perspective, several theories including energy and protein-to-fiber maximization, nutrient mixing, and toxin avoidance, have been proposed to explain the food choices of non-human primates. However, more recently, analytical frameworks such as nutritional geometry have been incorporated into primatology to explore, using a multivariate approach, the synergistic effects of multiple nutrients, secondary metabolites, and energy requirements on primate food choice. Dietary strategies associated with nutrient balancing highlight the tradeoffs that primates face in bypassing or selecting particular feeding sites and food items. In this Special Issue, the authors bring together a set of studies focusing on the nutritional ecology of a diverse set of primate taxa characterized by marked differences in dietary emphasis. The authors present, compare, and discuss the diversity of strategies used by primates in diet selection, and how species differences in ecology, physiology, anatomy, and phylogeny can affect patterns of nutrient choice and nutrient balancing. The use of a nutritionally explicit analytical framework is fundamental to identify the nutritional requirements of different individuals of a given species, and through its application, direct conservation efforts can be applied to regenerate and protect specific foods and food patches that offer the opportunity of a

  18. Bacteriocin-Mediated Competitive Interactions of Bacterial Populations and Communities

    Science.gov (United States)

    Riley, Margaret A.

    Explaining the coexistence of competing species is a major challenge in community ecology. In bacterial systems, competition is often driven by the production of bacteriocins; narrow spectrum proteinaceous toxins that serve to kill closely related species providing the producer better access to limited resources. Bacteriocin producers have been shown to competitively exclude sensitive, nonproducing strains. However, the interaction dynamics between bacteriocin producers, each lethal to its competitor, are largely unknown. Several recent studies have revealed some of the complexity of these interactions, employing a suite of in vitro, in vivo, and in silico bacterial model systems. This chapter describes the current state of knowledge regarding the population and community ecology of this potent family of toxins.

  19. Ecological Research of the Voluntary Disclosure about Listed Companies

    Science.gov (United States)

    Hu, Jing-Jing; Yan, Guang-Le

    In the paper, the research subject is the ecological relationship between the Small and Medium-sized Enterprises(SMEs) and the Large-scale Enterprises(Les). From the perspective of ecology, setting up the competitive model basic on the Logistic model, and carrying out further analysis about the voluntary information disclosure of listed company, then getting the strategic choice about the voluntary information disclosure and the ecological explanation of false information, and the dynamic mechanism and strategy of the voluntary information disclosure of listed company.

  20. Art, Ecology and Institutions

    DEFF Research Database (Denmark)

    Witzke, Anne Sophie

    2013-01-01

    The discourse of ecology and sustainability has gained critical traction in recent years. But how are these concepts framed within the space, language and idea of the exhibition? This panel discussion, moderated by Steven Lam and conducted by email in July 2012, sought to unpack the claims...... and limits of the ecological, looking specifically at various international case studies, within the practice of curatorial and exhibition studies. The discussion begins with a reflection on ‘DON'T/PANIC’ in Durban and ‘Rethink – Contemporary Art and Climate Change’ in Copenhagen, exhibitions that were...

  1. Art, Ecology and Institutions

    DEFF Research Database (Denmark)

    Witzke, Anne Sophie

    2013-01-01

    The discourse of ecology and sustainability has gained critical traction in recent years. But how are these concepts framed within the space, language and idea of the exhibition? This panel discussion, moderated by Steven Lam and conducted by email in July 2012, sought to unpack the claims...... and limits of the ecological, looking specifically at various international case studies, within the practice of curatorial and exhibition studies. The discussion begins with a reflection on ‘DON'T/PANIC’ in Durban and ‘Rethink – Contemporary Art and Climate Change’ in Copenhagen, exhibitions that were...

  2. Strategy Research Based on Ecological Niche Theory of Tourism Development of Northern Guangdong Province%基于生态位理论的粤北地区旅游发展策略研究

    Institute of Scientific and Technical Information of China (English)

    张颖

    2015-01-01

    旅游城市生态位测评与研究,对区域旅游资源开发、城市旅游品牌构建具有现实意义。选取广东省粤北地区韶关、河源、梅州、清远、云浮旅游城市5年的统计数据,以旅游资源维、旅游市场维、社会经济维、生态环境维4个维度20项变量分析为基础,运用生态位理论、聚类分析方法,对粤北地区旅游城市进行生态位测评。依据综合生态位、空间格局以及各个维度的生态位等比较分析结果,将粤北旅游城市划分为3类:双核心城市为清远,节点城市包括韶关、梅州,网络城市包括河源、云浮。结合区域旅游竞合理论,提出为实现粤北城市旅游产业的“共生、多赢”格局,应该培育粤北城市旅游产业的核心竞争力,提炼独特性、差异性城市旅游品牌,寻求跨城市、跨行业的合作,促进粤北区域旅游的创新、协调发展。%T he niche evaluation and research on tourism cities have realistic meanings on regional tourism source development and tourism city brand building .The article selects five years statistical data about the tourist cities of Shaoguan ,Heyuan ,Meizhou ,Qingyuan and Yunfu in Northern Guangdong Province , based on the analysis of 20 variance in 4 aspects including tourism resources ,tourism market ,social econo‐my and ecological condition by using niche theory and clustering method .On the basis of comprehensive ecological niche ,spatial pattern ,ecological niche on every dimensionality and other comparative analysis results .According to the analytic result the thesis divides the tourism cities in north Guangdong Province into three types ,the dual core city ,including Qingyuan ,the node city including Shaoguan and Meizhou and the network city including Heyuan and Yunfu .Combines with competition and cooperation theory of regional tourism ,to provide the theory that in order to achieve the pattern of “mutual grow th and multi

  3. Evidence for ecological flexibility in the cosmopolitan genus Curtobacterium

    OpenAIRE

    Alexander Bennett Chase; Philip Arevalo; Polz, Martin F.; Renaud Berlemont; Martiny, Jennifer B H

    2016-01-01

    Assigning ecological roles to bacterial taxa remains imperative to understanding how microbial communities will respond to changing environmental conditions. Here we analyze the genus Curtobacterium as it was found to be the most abundant taxon in a leaf litter community in southern California. Traditional characterization of this taxon predominantly associates it as the causal pathogen in the agricultural crops of dry beans. Therefore, we seek to conduct a broad investigation into this genus...

  4. Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium

    OpenAIRE

    Chase, Alexander B.; Arevalo, Philip; Polz, Martin F.; Berlemont, Renaud; Martiny, Jennifer B H

    2016-01-01

    Assigning ecological roles to bacterial taxa remains imperative to understanding how microbial communities will respond to changing environmental conditions. Here we analyze the genus Curtobacterium, as it was found to be the most abundant taxon in a leaf litter community in southern California. Traditional characterization of this taxon predominantly associates it as the causal pathogen in the agricultural crops of dry beans. Therefore, we sought to investigate whether the abundance of this ...

  5. Evolution of tolerance to PCBs and susceptibility to a bacterial pathogen (Vibrio harveyi) in Atlantic killifish (Fundulus heteroclitus) from New Bedford (MA, USA) harbor

    Energy Technology Data Exchange (ETDEWEB)

    Nacci, Diane [US Environmental Protection Agency, Office of Research and Development, National Health and Environmental Effects Research Laboratory, Atlantic Ecology Division, Narragansett, RI (United States)], E-mail: nacci.diane@epa.gov; Huber, Marina [US Environmental Protection Agency, Office of Research and Development, National Health and Environmental Effects Research Laboratory, Atlantic Ecology Division, Narragansett, RI (United States)], E-mail: akualtzin@yahoo.com; Champlin, Denise [US Environmental Protection Agency, Office of Research and Development, National Health and Environmental Effects Research Laboratory, Atlantic Ecology Division, Narragansett, RI (United States)], E-mail: champlin.denise@epa.gov; Jayaraman, Saro [US Environmental Protection Agency, Office of Research and Development, National Health and Environmental Effects Research Laboratory, Atlantic Ecology Division, Narragansett, RI (United States)], E-mail: jayaraman.saro@epa.gov; Cohen, Sarah [San Francisco State University, Department of Biology, Romberg Tiburon Center, San Francisco, CA (United States)], E-mail: sarahcoh@sfsu.edu; Gauger, Eric [University of Rhode Island, Department of Fisheries, Aquaculture, and Veterinary Sciences, Kingston, RI (United States)], E-mail: ejgauger@yahoo.com; Fong, Allison [University of Rhode Island, Department of Fisheries, Aquaculture, and Veterinary Sciences, Kingston, RI (United States)], E-mail: fonga@hawaii.edu; Gomez-Chiarri, Marta [University of Rhode Island, Department of Fisheries, Aquaculture, and Veterinary Sciences, Kingston, RI (United States)], E-mail: gomezchi@uri.edu

    2009-03-15

    A population of the non-migratory estuarine fish Fundulus heteroclitus (Atlantic killifish) resident to New Bedford (NB), Massachusetts, USA, an urban harbor highly contaminated with polychlorinated biphenyls (PCBs), demonstrates recently evolved tolerance to some aspects of PCB toxicity. PCB toxicology, ecological theory, and some precedence supported expectations of increased susceptibility to pathogens in NB killifish. However, laboratory bacterial challenges of the marine pathogen Vibrio harveyi to wild fish throughout the reproductive season and to their mature laboratory-raised progeny demonstrated comparable survival by NB and reference killifish, and improved survival by NB males. These results are inconsistent with hypothesized trade-offs of adaptation, and suggest that evolved tolerance in NB killifish may include mechanisms that minimize the immunosuppressive effects of PCBs. Compensatory strategies of populations persisting in highly contaminated environments provide a unique perspective for understanding the long-term ecological effects of toxic chemicals. - Killifish resident to a highly PCB-contaminated estuary survive pathogenic bacterial challenges well, suggesting their tolerance to PCB immunosuppression.

  6. Lipoproteins of Bacterial Pathogens▿

    Science.gov (United States)

    Kovacs-Simon, A.; Titball, R. W.; Michell, S. L.

    2011-01-01

    Bacterial lipoproteins are a set of membrane proteins with many different functions. Due to this broad-ranging functionality, these proteins have a considerable significance in many phenomena, from cellular physiology through cell division and virulence. Here we give a general overview of lipoprotein biogenesis and highlight examples of the roles of lipoproteins in bacterial disease caused by a selection of medically relevant Gram-negative and Gram-positive pathogens: Mycobacterium tuberculosis, Streptococcus pneumoniae, Borrelia burgdorferi, and Neisseria meningitidis. Lipoproteins have been shown to play key roles in adhesion to host cells, modulation of inflammatory processes, and translocation of virulence factors into host cells. As such, a number of lipoproteins have been shown to be potential vaccines. This review provides a summary of some of the reported roles of lipoproteins and of how this knowledge has been exploited in some cases for the generation of novel countermeasures to bacterial diseases. PMID:20974828

  7. 公众权益与跨区域生态规制策略研究--相邻地方政府间的演化博弈行为分析%Public Rights and Cross-regional Ecological Regulation Strategy Research---Adjoining Government Behavior Analysis Based on Evolutionary Game Theory

    Institute of Scientific and Technical Information of China (English)

    彭皓玥

    2016-01-01

    以公众权益为视角,运用演化博弈分析方法,分别从未引入约束机制的公众生态权益模糊情形以及引入约束机制的生态权益明确情形,建立跨区域生态规制演化博弈模型,剖析不同情形相邻地方政府间的博弈行为。结果表明,明确公众生态权益,引入强制约束机制后,原有博弈结构被改变,长期内,有利于规避跨区域环境规制的“囚徒困境”。进一步探析博弈参数发现,反馈机制、责惩措施、行为效果感知、行为成本等要素均能改变鞍点位置,推进博弈稳定策略向博弈方严格落实国家生态规制方向演进。研究结论可为政府制定跨区域生态规制策略提供有针对性的政策参考。%Based on the public rights perspective ,the cross‐regional ecological regulation strategy evolutionary game model was established .The ecological regulation strategies of local governments were studied respectively from vague public rights situation and definite public rights situation .The results showed that when force restriction mechanism had been in‐troduced ,the public rights became definite ,game structure had been changed .In the long term ,it was beneficial to avoid prisoner's dilemma in environmental regulation .Moreover the article still analyzed the parameters to find the way of the Pa‐reto improvement .It had been showed that these were useful to adjust ecological regulation for the government by impro‐ving feedback mechanism and behavior perception ,carrying out punishment measures ,and reducing the execution cost .

  8. Prevention and Management of Bacterial Infections in Cirrhosis

    Directory of Open Access Journals (Sweden)

    Sunil K. Taneja

    2011-01-01

    Full Text Available Patients with cirrhosis of liver are at risk of developing serious bacterial infections due to altered immune defenses. Despite the widespread use of broad spectrum antibiotics, bacterial infection is responsible for up to a quarter of the deaths of patients with liver disease. Cirrhotic patients with gastrointestinal bleed have a considerably higher incidence of bacterial infections particularly spontaneous bacterial peritonitis. High index of suspicion is required to identify infections at an early stage in the absence of classical signs and symptoms. Energetic use of antibacterial treatment and supportive care has decreased the morbidity and mortality over the years; however, use of antibiotics has to be judicious, as their indiscriminate use can lead to antibiotic resistance with potentially disastrous consequences. Preventive strategies are still in evolution and involve use of antibiotic prophylaxis in patients with gastrointestinal bleeding and spontaneous bacterial infections and selective decontamination of the gut and oropharynx.

  9. Application of Ecological Restoration Strategy for Controlling Debris Flow Hazards in Tianchi Lake in Xinjiang%生态修复对策在新疆天池泥石流地质灾害防治中的应用

    Institute of Scientific and Technical Information of China (English)

    闫亮; 李勇; 何杰; 赵旭; 陈宁生; 杨薇; 施蕾蕾

    2011-01-01

    在中国许多自然景观资源丰富的风景名胜区内,由于生态环境保护意识的缺乏,致使风景区内各种地质灾害特别是泥石流、滑坡、崩塌等灾害非常发育,这不仅严重影响了景区内旅游业的可持续发展,而且对景区及景区周边生态系统的平衡造成了不可弥补的破坏.笔者将以新疆天池自然保护区上游的泥石流灾害为例,在充分认识其上游泥石流灾害的活动特征和发育模式的基础上,采用生态修复的理论,将流域内的泥石流灾害防治体系融入到生态景观规划中,完善流域内生态系统的恢复能力和防护功能,从而实现对天池泥石流灾害的合理控制,有效地保护自然景观资源和旅游条件.%Because of lacking consciousness to protect ecological environment, a lot of geological disasters such as mud-rock flow, landslides, and collapses, are extraordinarily active in many scenic spots, which have influences on landscape resources in our country.For this reason, tourism cannot have a sustainable development, and the balance of eco-system is broken in scenic spots and surrounding areas.Based on the researches of debris activity characteristics and its development patterns in upstream watershed of Sangonghe at Xinjiang, we use the concept of ecological restoration and combine debris control model with eco-landscape plan to improve the recovery ability and protection function of ceo-system in Tianchi Lake Nature Reserve.The aim is to control the debris flow hazards, and protect landscape resources and tourism functions in watershed of Sangonghe effectively.

  10. Diagnosis of bacterial vaginosis

    Directory of Open Access Journals (Sweden)

    Đukić Slobodanka

    2013-01-01

    Full Text Available Bacterial vaginosis is a common, complex clinical syndrome characterized by alterations in the normal vaginal flora. When symptomatic, it is associated with a malodorous vaginal discharge and on occasion vaginal burning or itching. Under normal conditions, lactobacilli constitute 95% of the bacteria in the vagina. Bacterial vaginosis is associated with severe reduction or absence of the normal H2O2­producing lactobacilli and overgrowth of anaerobic bacteria and Gardnerella vaginalis, Atopobium vaginae, Mycoplasma hominis and Mobiluncus species. Most types of infectious disease are diagnosed by culture, by isolating an antigen or RNA/DNA from the microbe, or by serodiagnosis to determine the presence of antibodies to the microbe. Therefore, demonstration of the presence of an infectious agent is often a necessary criterion for the diagnosis of the disease. This is not the case for bacterial vaginosis, since the ultimate cause of the disease is not yet known. There are a variety of methods for the diagnosis of bacterial vaginosis but no method can at present be regarded as the best. Diagnosing bacterial vaginosis has long been based on the clinical criteria of Amsel, whereby three of four defined criteria must be satisfied. Nugent’s scoring system has been further developed and includes validation of the categories of observable bacteria structures. Up­to­date molecular tests are introduced, and better understanding of vaginal microbiome, a clear definition for bacterial vaginosis, and short­term and long­term fluctuations in vaginal microflora will help to better define molecular tests within the broader clinical context.

  11. The development of ecological tourism and ecological civilization construction

    Institute of Scientific and Technical Information of China (English)

    张波

    2014-01-01

    This passage shows us the characters of ecology tourism and reveals the problems in the modern tourism , emphasises that we should develop ecology tourism and make a link between them, then leads to Sustainable Development.

  12. Bacterial blight of cotton

    Directory of Open Access Journals (Sweden)

    Aïda JALLOUL

    2015-04-01

    Full Text Available Bacterial blight of cotton (Gossypium ssp., caused by Xanthomonas citri pathovar malvacearum, is a severe disease occurring in all cotton-growing areas. The interactions between host plants and the bacteria are based on the gene-for-gene concept, representing a complex resistance gene/avr gene system. In light of the recent data, this review focuses on the understanding of these interactions with emphasis on (1 the genetic basis for plant resistance and bacterial virulence, (2 physiological mechanisms involved in the hypersensitive response to the pathogen, including hormonal signaling, the oxylipin pathway, synthesis of antimicrobial molecules and alteration of host cell structures, and (3 control of the disease.

  13. Bacterial glycosyltransferase toxins.

    Science.gov (United States)

    Jank, Thomas; Belyi, Yury; Aktories, Klaus

    2015-12-01

    Mono-glycosylation of host proteins is a common mechanism by which bacterial protein toxins manipulate cellular functions of eukaryotic target host cells. Prototypic for this group of glycosyltransferase toxins are Clostridium difficile toxins A and B, which modify guanine nucleotide-binding proteins of the Rho family. However, toxin-induced glycosylation is not restricted to the Clostridia. Various types of bacterial pathogens including Escherichia coli, Yersinia, Photorhabdus and Legionella species produce glycosyltransferase toxins. Recent studies discovered novel unexpected variations in host protein targets and amino acid acceptors of toxin-catalysed glycosylation. These findings open new perspectives in toxin as well as in carbohydrate research.

  14. Alternatives to overcoming bacterial resistances: State-of-the-art.

    Science.gov (United States)

    Rios, Alessandra C; Moutinho, Carla G; Pinto, Flávio C; Del Fiol, Fernando S; Jozala, Angela; Chaud, Marco V; Vila, Marta M D C; Teixeira, José A; Balcão, Victor M

    2016-10-01

    Worldwide, bacterial resistance to chemical antibiotics has reached such a high level that endangers public health. Presently, the adoption of alternative strategies that promote the elimination of resistant microbial strains from the environment is of utmost importance. This review discusses and analyses several (potential) alternative strategies to current chemical antibiotics. Bacteriophage (or phage) therapy, although not new, makes use of strictly lytic phage particles as an alternative, or a complement, in the antimicrobial treatment of bacterial infections. It is being rediscovered as a safe method, because these biological entities devoid of any metabolic machinery do not possess any affinity whatsoever to eukaryotic cells. Lysin therapy is also recognized as an innovative antimicrobial therapeutic option, since the topical administration of preparations containing purified recombinant lysins with amounts in the order of nanograms, in infections caused by Gram-positive bacteria, demonstrated a high therapeutic potential by causing immediate lysis of the target bacterial cells. Additionally, this therapy exhibits the potential to act synergistically when combined with certain chemical antibiotics already available on the market. Another potential alternative antimicrobial therapy is based on the use of antimicrobial peptides (AMPs), amphiphilic polypeptides that cause disruption of the bacterial membrane and can be used in the treatment of bacterial, fungal and viral infections, in the prevention of biofilm formation, and as antitumoral agents. Interestingly, bacteriocins are a common strategy of bacterial defense against other bacterial agents, eliminating the potential opponents of the former and increasing the number of available nutrients in the environment for their own growth. They can be applied in the food industry as biopreservatives and as probiotics, and also in fighting multi-resistant bacterial strains. The use of antibacterial antibodies

  15. Bacterial functional redundancy along a soil reclamation gradient

    OpenAIRE

    Yin, B.; D. Crowley; G. Sparovek; MELO, W. J. de.; Borneman, J

    2000-01-01

    A strategy to measure bacterial functional redundancy was developed and tested with soils collected along a soil reclamation gradient by determining the richness and diversity of bacterial groups capable of in situ growth on selected carbon substrates. Soil cores were collected from four sites along a transect from the Jamari tin mine site in the Jamari National Forest, Rondonia, RO, Brazil: denuded mine spoil, soil from below the canopy of invading pioneer trees, revegetated soil under new g...

  16. Evolution of Bacterial Pathogens within the Human Host

    OpenAIRE

    Bliven, Kimberly A.; Maurelli, Anthony T.

    2016-01-01

    Selective pressures within the human host, including interactions with innate and adaptive immune responses, exposure to medical interventions such as antibiotics, and competition with commensal microbiota all facilitate the evolution of bacterial pathogens. In this chapter, we present examples of pathogen strategies which emerged as a result of selective pressures within the human host niche, and discuss the resulting co-evolutionary ‘arms race’ between these organisms. In bacterial pathogen...

  17. Antibacterial treatment of bacterial vaginosis: current and emerging therapies

    Science.gov (United States)

    Menard, Jean-Pierre

    2011-01-01

    Bacterial vaginosis is a common cause of malodorous vaginal discharge. It is also associated with sexually transmitted infections and adverse pregnancy outcomes. The magnitude of the gynecological and obstetrical consequences has stimulated therapeutic research and led to the testing of several therapies. The objective of this work is to present the currently available therapeutic strategies for the treatment of bacterial vaginosis and associated recommendations, and discuss the emerging therapies. PMID:21976983

  18. Metabolomics in chemical ecology.

    Science.gov (United States)

    Kuhlisch, Constanze; Pohnert, Georg

    2015-07-01

    Chemical ecology elucidates the nature and role of natural products as mediators of organismal interactions. The emerging techniques that can be summarized under the concept of metabolomics provide new opportunities to study such environmentally relevant signaling molecules. Especially comparative tools in metabolomics enable the identification of compounds that are regulated during interaction situations and that might play a role as e.g. pheromones, allelochemicals or in induced and activated defenses. This approach helps overcoming limitations of traditional bioassay-guided structure elucidation approaches. But the power of metabolomics is not limited to the comparison of metabolic profiles of interacting partners. Especially the link to other -omics techniques helps to unravel not only the compounds in question but the entire biosynthetic and genetic re-wiring, required for an ecological response. This review comprehensively highlights successful applications of metabolomics in chemical ecology and discusses existing limitations of these novel techniques. It focuses on recent developments in comparative metabolomics and discusses the use of metabolomics in the systems biology of organismal interactions. It also outlines the potential of large metabolomics initiatives for model organisms in the field of chemical ecology.

  19. Ecology under lake ice

    NARCIS (Netherlands)

    Hampton, Stephanie E.; Galloway, Aaron W. E.; Powers, Stephen M.; Ozersky, Ted; Woo, Kara H.; Batt, Ryan D.; Labou, Stephanie G.; O'Reilly, Catherine M.; Sharma, Sapna; Lottig, Noah R.; Stanley, Emily H.; North, Rebecca L.; Stockwell, Jason D.; Adrian, Rita; Weyhenmeyer, Gesa A.; Arvola, Lauri; Baulch, Helen M.; Bertani, Isabella; Bowman, Larry L., Jr.; Carey, Cayelan C.; Catalan, Jordi; Colom-Montero, William; Domine, Leah M.; Felip, Marisol; Granados, Ignacio; Gries, Corinna; Grossart, Hans-Peter; Haberman, Juta; Haldna, Marina; Hayden, Brian; Higgins, Scott N.; Jolley, Jeff C.; Kahilainen, Kimmo K.; Kaup, Enn; Kehoe, Michael J.; MacIntyre, Sally; Mackay, Anson W.; Mariash, Heather L.; Mckay, Robert M.; Nixdorf, Brigitte; Noges, Peeter; Noges, Tiina; Palmer, Michelle; Pierson, Don C.; Post, David M.; Pruett, Matthew J.; Rautio, Milla; Read, Jordan S.; Roberts, Sarah L.; Ruecker, Jacqueline; Sadro, Steven; Silow, Eugene A.; Smith, Derek E.; Sterner, Robert W.; Swann, George E. A.; Timofeyev, Maxim A.; Toro, Manuel; Twiss, Michael R.; Vogt, Richard J.; Watson, Susan B.; Whiteford, Erika J.; Xenopoulos, Marguerite A.

    Winter conditions are rapidly changing in temperate ecosystems, particularly for those that experi-ence periods of snow and ice cover. Relatively little is known of winter ecology in these systems,due to a historical research focus on summer ‘growing seasons’. We executed the first global

  20. THE AUTOIMMUNE ECOLOGY.

    Directory of Open Access Journals (Sweden)

    Juan-Manuel eAnaya

    2016-04-01

    Full Text Available Autoimmune diseases (ADs represent a heterogeneous group of disorders that affect specific target organs or multiple organ systems. These conditions share common immunopathogenic mechanisms (i.e., the autoimmune tautology, which explain the clinical similarities they have among them as well as their familial clustering (i.e., coaggregation. As part of the autoimmune tautology, the influence of environmental exposure on the risk of developing ADs is paramount (i.e., the autoimmune ecology. In fact, environment, more than genetics, shapes immune system. Autoimmune ecology is akin to exposome, that is all the exposures - internal and external - across the lifespan, interacting with hereditary factors (both genetics and epigenetics to favor or protect against autoimmunity and its outcomes. Herein we provide an overview of the autoimmune ecology, focusing on the immune response to environmental agents in general, and microbiota, cigarette smoking, alcohol and coffee consumption, socioeconomic status, gender and sex hormones, vitamin D, organic solvents and vaccines in particular. Inclusion of the autoimmune ecology in disease etiology and health will improve the way personalized medicine is currently conceived and applied.

  1. Aspects of Marine Ecology.

    Science.gov (United States)

    Awkerman, Gary L.

    This publication is designed for use in standard science curricula to develop oceanologic manifestations of certain science topics. Included are teacher guides, student activities, and demonstrations to impart ocean science understanding, specifically, aspects of marine ecology, to high school students. The course objectives include the ability of…

  2. Marine and Island Ecology.

    Science.gov (United States)

    Stephens, Lawrence J.; And Others

    1988-01-01

    Describes an ecology course which provides students with an opportunity to observe aquatic and terrestrial life in the Bahamas. States that students learn scientific methodology by measuring physical and chemical aspects of the island habitats. Provides information on the island, course description and objectives, transportation, facilities, and…

  3. Evolving digital ecological networks.

    Science.gov (United States)

    Fortuna, Miguel A; Zaman, Luis; Wagner, Aaron P; Ofria, Charles

    2013-01-01

    "It is hard to realize that the living world as we know it is just one among many possibilities" [1]. Evolving digital ecological networks are webs of interacting, self-replicating, and evolving computer programs (i.e., digital organisms) that experience the same major ecological interactions as biological organisms (e.g., competition, predation, parasitism, and mutualism). Despite being computational, these programs evolve quickly in an open-ended way, and starting from only one or two ancestral organisms, the formation of ecological networks can be observed in real-time by tracking interactions between the constantly evolving organism phenotypes. These phenotypes may be defined by combinations of logical computations (hereafter tasks) that digital organisms perform and by expressed behaviors that have evolved. The types and outcomes of interactions between phenotypes are determined by task overlap for logic-defined phenotypes and by responses to encounters in the case of behavioral phenotypes. Biologists use these evolving networks to study active and fundamental topics within evolutionary ecology (e.g., the extent to which the architecture of multispecies networks shape coevolutionary outcomes, and the processes involved).

  4. Evolving digital ecological networks.

    Directory of Open Access Journals (Sweden)

    Miguel A Fortuna

    Full Text Available "It is hard to realize that the living world as we know it is just one among many possibilities" [1]. Evolving digital ecological networks are webs of interacting, self-replicating, and evolving computer programs (i.e., digital organisms that experience the same major ecological interactions as biological organisms (e.g., competition, predation, parasitism, and mutualism. Despite being computational, these programs evolve quickly in an open-ended way, and starting from only one or two ancestral organisms, the formation of ecological networks can be observed in real-time by tracking interactions between the constantly evolving organism phenotypes. These phenotypes may be defined by combinations of logical computations (hereafter tasks that digital organisms perform and by expressed behaviors that have evolved. The types and outcomes of interactions between phenotypes are determined by task overlap for logic-defined phenotypes and by responses to encounters in the case of behavioral phenotypes. Biologists use these evolving networks to study active and fundamental topics within evolutionary ecology (e.g., the extent to which the architecture of multispecies networks shape coevolutionary outcomes, and the processes involved.

  5. Activity Book: Ocean Ecology.

    Science.gov (United States)

    Learning, 1992

    1992-01-01

    Presents a collection of activities to help elementary students study ocean ecology. The activities have students investigate ocean inhabitants, analyze animal adaptations, examine how temperature and saltiness affect ocean creatures, and learn about safeguarding the sea. Student pages offer reproducible learning sheets. (SM)

  6. Biodiversity in Benthic Ecology

    DEFF Research Database (Denmark)

    Friberg, Nikolai; Carl, J. D.

    Foreword: This proceeding is based on a set of papers presented at the second Nordic Benthological Meeting held in Silkeborg, November 13-14, 1997. The main theme of the meeting was biodiversity in benthic ecology and the majority of contributions touch on this subject. In addition, the proceeding...

  7. Ecology of lianas

    NARCIS (Netherlands)

    Schnitzer, S.A.; Bongers, F.; Burnham, R.J.; Putz, F.E.

    2015-01-01

    A liana is a long-stemmed, woody vine that is rooted in the soil at ground level and uses trees to climb up to the canopy to get access to well-lit areas of the forest. The main goal of this book is to present the current status of liana ecology in tropical and temperate forests. In essence, it is a

  8. Socio-Ecological Innovation

    DEFF Research Database (Denmark)

    Edgeman, Rick; Eskildsen, Jacob Kjær

    for Sustainability is (generally) a subset of the enterprise innovation portfolio. Effective and efficient integration of Innovation for Sustainability and Sustainable Innovation aids translation of 3E (equity, ecology, economy) enterprise strategyof the Triple Top Line into 3P (people, planet, profit) Triple Bottom...

  9. Ecology in Urban Education.

    Science.gov (United States)

    Johnson, Letitia K.; Ryan, Michael

    In this course guide to the teaching of urban ecology, six learning activities on the following topics are outlined: (1) city location and growth; (2) an in-depth study of New Orleans; (3) city shape and structure; (4) size and spacing of cities; (5) cities with special functions; (6) local community study. Educational objectives for each activity…

  10. Ecology and Human Destiny.

    Science.gov (United States)

    Haught, John F.

    1999-01-01

    Examines eschatology as the heart of Christian faith, suggesting that an appreciation of an eschatological interpretation of the cosmos enables acceptance of nature's transience and a grounding for an ecological ethic. Maintains that recent scientific developments present a promising, rather than pessimistic, picture of the universe. Holds that…

  11. The Autoimmune Ecology.

    Science.gov (United States)

    Anaya, Juan-Manuel; Ramirez-Santana, Carolina; Alzate, Maria A; Molano-Gonzalez, Nicolas; Rojas-Villarraga, Adriana

    2016-01-01

    Autoimmune diseases (ADs) represent a heterogeneous group of disorders that affect specific target organs or multiple organ systems. These conditions share common immunopathogenic mechanisms (i.e., the autoimmune tautology), which explain the clinical similarities they have among them as well as their familial clustering (i.e., coaggregation). As part of the autoimmune tautology, the influence of environmental exposure on the risk of developing ADs is paramount (i.e., the autoimmune ecology). In fact, environment, more than genetics, shapes immune system. Autoimmune ecology is akin to exposome, that is all the exposures - internal and external - across the lifespan, interacting with hereditary factors (both genetics and epigenetics) to favor or protect against autoimmunity and its outcomes. Herein, we provide an overview of the autoimmune ecology, focusing on the immune response to environmental agents in general, and microbiota, cigarette smoking, alcohol and coffee consumption, socioeconomic status (SES), gender and sex hormones, vitamin D, organic solvents, and vaccines in particular. Inclusion of the autoimmune ecology in disease etiology and health will improve the way personalized medicine is currently conceived and applied.

  12. Linking human health, climate change, and food security through ecological-based sanitation systems

    Science.gov (United States)

    Ryals, R.; Kramer, S.; Porder, S.; Andersen, G. L.

    2015-12-01

    Ensuring access to clean, safe sanitation for the world's population remains a challenging, yet critical, global sustainability goal. Ecological-based sanitation (EcoSan) technology is a promising strategy for improving sanitation, particularly in areas where financial resources and infrastructure are limiting. The composting of human waste and its use as an agricultural soil amendment can tackle three important challenges in developing countries - providing improved sanitation for vulnerable communities, reducing the spread of intestinal-born pathogens, and returning nutrients and organic matter to degraded agricultural soils. The extent of these benefits and potential tradeoffs are not well known, but have important implications for the widespread adoption of this strategy to promote healthy communities and enhance food security. We quantified the effects of EcoSan on the climate and human health in partnership with Sustainable Organic Integrated Livelihoods (SOIL) in Haiti. We measured greenhouse gas emissions (nitrous oxide, methane, and carbon dioxide) from compost piles that ranged in age from 0 to 14 months (i.e. finished) from two compost facilities managed with or without cement lining. We also measured emissions from a government-operated waste treatment pond and a grass field where waste has been illegally dumped. The highest methane emissions were observed from the anaerobic waste pond, whereas the dump site and compost piles had higher nitrous oxide emissions. Net greenhouse gases (CO2-equivalents) from unlined compost piles were 8x lower than lined compost piles and 20 and 30x lower than the dump and waste pond, respectively. We screened finished compost for fecal pathogens using bacterial 16S sequencing. Bacterial pathogens were eliminated regardless of the type of composting process. Pilot trials indicate that the application of compost to crops has a large potential for increasing food production. This research suggests that EcoSan systems are

  13. Molecular ecological network analyses

    Directory of Open Access Journals (Sweden)

    Deng Ye

    2012-05-01

    Full Text Available Abstract Background Understanding the interaction among different species within a community and their responses to environmental changes is a central goal in ecology. However, defining the network structure in a microbial community is very challenging due to their extremely high diversity and as-yet uncultivated status. Although recent advance of metagenomic technologies, such as high throughout sequencing and functional gene arrays, provide revolutionary tools for analyzing microbial community structure, it is still difficult to examine network interactions in a microbial community based on high-throughput metagenomics data. Results Here, we describe a novel mathematical and bioinformatics framework to construct ecological association networks named molecular ecological networks (MENs through Random Matrix Theory (RMT-based methods. Compared to other network construction methods, this approach is remarkable in that the network is automatically defined and robust to noise, thus providing excellent solutions to several common issues associated with high-throughput metagenomics data. We applied it to determine the network structure of microbial communities subjected to long-term experimental warming based on pyrosequencing data of 16 S rRNA genes. We showed that the constructed MENs under both warming and unwarming conditions exhibited topological features of scale free, small world and modularity, which were consistent with previously described molecular ecological networks. Eigengene analysis indicated that the eigengenes represented the module profiles relatively well. In consistency with many other studies, several major environmental traits including temperature and soil pH were found to be important in determining network interactions in the microbial communities examined. To facilitate its application by the scientific community, all these methods and statistical tools have been integrated into a comprehensive Molecular Ecological

  14. Prevalence and antimicrobial resistance pattern of bacterial meningitis in Egypt

    Directory of Open Access Journals (Sweden)

    Shaban Lamyaa

    2009-09-01

    Full Text Available Abstract Infectious diseases are the leading cause of morbidity and mortality in the developing world. In Egypt bacterial diseases constitute a great burden, with several particular bacteria sustaining the leading role of multiple serious infections. This article addresses profound bacterial agents causing a wide array of infections including but not limited to pneumonia and meningitis. The epidemiology of such infectious diseases and the prevalence of Streptococcus pneumoniae, Neisseria meningitidis and Haemophilus influenzae are reviewed in the context of bacterial meningitis. We address prevalent serotypes in Egypt, antimicrobial resistance patterns and efficacy of vaccines to emphasize the importance of periodic surveillance for appropriate preventive and treatment strategies.

  15. Ecological engineering. Bridging between ecology and civil engineering

    Energy Technology Data Exchange (ETDEWEB)

    Van Bohemen, H. (ed.)

    2005-07-01

    On the potential role of ecological technology as a bridge towards a sustainable development of infrastructure. The book reviews the input of (landscape) ecology to solve environmental problems due to human activity. Theories about ecological engineering as well as case studies show the magnificent opportunities to integrate human activities in the biosphere.

  16. Batch medication of intestinal infections in nursery pigs—A randomised clinical trial on the efficacy of treatment strategy, type of antibiotic and bacterial load on average daily weight gain

    DEFF Research Database (Denmark)

    Weber, Nicolai Rosager; Pedersen, Ken Steen; Hansen, Christian Fink

    2017-01-01

    after weaning) on average daily weight gain (ADG); (2) to compare the effect of treatment with doxycycline or tylosine on diarrhoea prevalence, pathogenic bacterial load, and ADG; (3) to evaluate PCR testing of faecal pen floor samples as a diagnostic tool for determining the optimal time of treatment...... LI-positive pens (p = 0.004), lower excretion levels of LI (p = 0.013), and fewer pens with a high level of LI (p = 0.031) compared to pens treated with tylosine. There was no significant difference in F4, F18 and PILO levels after treatment with the two antibiotic compounds. There was a significant...... difference (p = 0.04) of mean diarrhoea prevalence on day 21 of the study between pens treated with tylosine (0.254, 95% CI: 0.184–0.324), and doxycycline (0.167, 95% CI: 0.124–0.210). The type of antibiotic compound was not found to have a significant effect on ADG (p = 0.209). (3) Pigs starting treatment...

  17. Valuation of ecological resources

    Energy Technology Data Exchange (ETDEWEB)

    Scott, M.J.; Bilyard, G.R.; Link, S.O.; Ricci, P.F.; Seely, H.E.; Ulibarri, C.A.; Westerdahl, H.E.

    1995-04-01

    Ecological resources are resources that have functional value to ecosystems. Frequently, these functions are overlooked in terms of the value they provide to humans. Environmental economics is in search of an appropriate analysis framework for such resources. In such a framework, it is essential to distinguish between two related subsets of information: (1) ecological processes that have intrinsic value to natural ecosystems; and (2) ecological functions that are values by humans. The present study addresses these concerns by identifying a habitat that is being displaced by development, and by measuring the human and ecological values associated with the ecological resources in that habitat. It is also essential to determine which functions are mutually exclusive and which are, in effect, complementary or products of joint production. The authors apply several resource valuation tools, including contingent valuation methodology (CVM), travel cost methodology (TCM), and hedonic damage-pricing (HDP). One way to derive upper-limit values for more difficult-to-value functions is through the use of human analogs, because human-engineered systems are relatively inefficient at supplying the desired services when compared with natural systems. Where data on the relative efficiencies of natural systems and human analogs exist, it is possible to adjust the costs of providing the human analog by the relative efficiency of the natural system to obtain a more realistic value of the function under consideration. The authors demonstrate this approach in an environmental economic case study of the environmental services rendered by shrub-steppe habitats of Benton County, Washington State.

  18. Exploring the chemistry of uncultivated bacterial symbionts: antitumor polyketides of the pederin family.

    Science.gov (United States)

    Piel, Jörn; Butzke, Daniel; Fusetani, Nobuhiro; Hui, Dequan; Platzer, Matthias; Wen, Gaiping; Matsunaga, Shigeki

    2005-03-01

    Symbiotic bacteria have long been proposed as being responsible for the production of numerous natural products isolated from invertebrate animals. However, systematic studies of invertebrate-symbiont associations are usually associated with serious technical challenges, such as the general resistance of symbionts to culturing attempts and the complexity of many microbial consortia. Herein an overview is provided on the culture-independent, metagenomic strategies recently employed by our group to contribute to a better understanding of natural product symbiosis. Using terrestrial Paederus spp. beetles and the marine sponge Theonella swinhoei as model animals, the putative genes responsible for the production of pederin-type antitumor polyketides have been isolated. In Paederus fuscipes, which uses pederin for chemical defense, these genes belong to an as-yet unculturable symbiont closely related to Pseudomonas aeruginosa. To study the extremely complex association of T. swinhoei and its multispecies bacterial consortium, we used a phylogenetic approach that allowed the isolation of onnamide/theopederin polyketide synthase genes from an uncultured sponge symbiont. Analysis of the biosynthesis genes provided unexpected insights into a possible evolution of pederin-type pathways. Besides revealing new facets of invertebrate chemical ecology, these first gene clusters from uncultivated symbiotic producers suggest possible biotechnological strategies to solve the supply problem associated with the development of most marine drug candidates.

  19. The evolutionary ecology of C4 plants.

    Science.gov (United States)

    Christin, Pascal-Antoine; Osborne, Colin P

    2014-12-01

    C4 photosynthesis is a physiological syndrome resulting from multiple anatomical and biochemical components, which function together to increase the CO2 concentration around Rubisco and reduce photorespiration. It evolved independently multiple times and C4 plants now dominate many biomes, especially in the tropics and subtropics. The C4 syndrome comes in many flavours, with numerous phenotypic realizations of C4 physiology and diverse ecological strategies. In this work, we analyse the events that happened in a C3 context and enabled C4 physiology in the descendants, those that generated the C4 physiology, and those that happened in a C4 background and opened novel ecological niches. Throughout the manuscript, we evaluate the biochemical and physiological evidence in a phylogenetic context, which demonstrates the importance of contingency in evolutionary trajectories and shows how these constrained the realized phenotype. We then discuss the physiological innovations that allowed C4 plants to escape these constraints for two important dimensions of the ecological niche--growth rates and distribution along climatic gradients. This review shows that a comprehensive understanding of C4 plant ecology can be achieved by accounting for evolutionary processes spread over millions of years, including the ancestral condition, functional convergence via independent evolutionary trajectories, and physiological diversification.

  20. Ecological restoration alters microbial communities in mine tailings profiles

    Science.gov (United States)

    Li, Yang; Jia, Zhongjun; Sun, Qingye; Zhan, Jing; Yang, Yang; Wang, Dan

    2016-04-01

    Ecological restoration of mine tailings have impact on soil physiochemical properties and microbial communities. The surface soil has been a primary concern in the past decades, however it remains poorly understood about the adaptive response of microbial communities along the profile during ecological restoration of the tailings. In this study, microbial communities along a 60-cm profile were investigated in a mine tailing pond during ecological restoration of the bare waste tailings (BW) with two vegetated soils of Imperata cylindrica (IC) and Chrysopogon zizanioides (CZ) plants. Revegetation of both IC and CZ could retard soil degradation of mine tailing by stimulation of soil pH at 0-30 cm soils and altered the bacterial communities at 0-20 cm depths of the mine tailings. Significant differences existed in the relative abundance of the phyla Alphaproteobacteria, Deltaproteobacteria, Acidobacteria, Firmicutes and Nitrospira. Slight difference of bacterial communities were found at 30-60 cm depths of mine tailings. Abundance and activity analysis of nifH genes also explained the elevated soil nitrogen contents at the surface 0-20 cm of the vegetated soils. These results suggest that microbial succession occurred primarily at surface tailings and vegetation of pioneering plants might have promoted ecological restoration of mine tailings.