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Sample records for bacteria degrade explosives

  1. Bacteria and lignin degradation

    Institute of Scientific and Technical Information of China (English)

    Jing LI; Hongli YUAN; Jinshui YANG

    2009-01-01

    Lignin is both the most abundant aromatic (phenolic) polymer and the second most abundant raw material.It is degraded and modified by bacteria in the natural world,and bacteria seem to play a leading role in decomposing lignin in aquatic ecosystems.Lignin-degrading bacteria approach the polymer by mechanisms such as tunneling,erosion,and cavitation.With the advantages of immense environmental adaptability and biochemical versatility,bacteria deserve to be studied for their ligninolytic potential.

  2. Chitin Degradation In Marine Bacteria

    DEFF Research Database (Denmark)

    Paulsen, Sara; Machado, Henrique; Gram, Lone

    2015-01-01

    Introduction: Chitin is the most abundant polymer in the marine environment and the second most abundant in nature. Chitin does not accumulate on the ocean floor, because of microbial breakdown. Chitin degrading bacteria could have potential in the utilization of chitin as a renewable carbon...... and nitrogen source in the fermentation industry.Methods: Here, whole genome sequenced marine bacteria were screened for chitin degradation using phenotypic and in silico analyses.Results: The in silico analyses revealed the presence of three to nine chitinases in each strain, however the number of chitinases...... chitin regulatory system.Conclusions: This study has provided insight into the ecology of chitin degradation in marine bacteria. It also served as a basis for choosing a more efficient chitin degrading production strain e.g. for the use of chitin waste for large-scale fermentations....

  3. Chemotactic selection of pollutant degrading soil bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Hazen, T.C.

    1991-03-04

    A method is described for identifying soil microbial strains which may be bacterial degraders of pollutants. This method includes: Placing a concentration of a pollutant in a substantially closed container; placing the container in a sample of soil for a period of time ranging from one minute to several hours; retrieving the container and collecting its contents; microscopically determining the identity of the bacteria present. Different concentrations of the pollutant can be used to determine which bacteria respond to each concentration. The method can be used for characterizing a polluted site or for looking for naturally occurring biological degraders of the pollutant. Then bacteria identified as degraders of the pollutant and as chemotactically attracted to the pollutant are used to innoculate contaminated soil. To enhance the effect of the bacteria on the pollutant, nutrients are cyclicly provided to the bacteria then withheld to alternately build up the size of the bacterial colony or community and then allow it to degrade the pollutant.

  4. HYDROCARBON-DEGRADING BACTERIA AND SURFACTANT ACTIVITY

    Energy Technology Data Exchange (ETDEWEB)

    Brigmon, R; Topher Berry, T; Grazyna A. Plaza, G; jacek Wypych, j

    2006-08-15

    Fate of benzene ethylbenzene toluene xylenes (BTEX) compounds through biodegradation was investigated using two different bacteria, Ralstonia picketti (BP-20) and Alcaligenes piechaudii (CZOR L-1B). These bacteria were isolated from extremely polluted petroleum hydrocarbon contaminated soils. PCR and Fatty Acid Methyl Ester (FAME) were used to identify the isolates. Biodegradation was measured using each organism individually and in combination. Both bacteria were shown to degrade each of the BTEX compounds. Alcaligenes piechaudii biodegraded BTEXs more efficiently while mixed with BP-20 and individually. Biosurfactant production was observed by culture techniques. In addition 3-hydroxy fatty acids, important in biosurfactant production, was observed by FAME analysis. In the all experiments toluene and m+p- xylenes were better growth substrates for both bacteria than the other BTEX compounds. In addition, the test results indicate that the bacteria could contribute to bioremediation of aromatic hydrocarbons (BTEX) pollution increase biodegradation through the action by biosurfactants.

  5. Degradation of multiwall carbon nanotubes by bacteria

    International Nuclear Information System (INIS)

    Understanding the environmental transformation of multiwall carbon nanotubes (MWCNTs) is important to their life cycle assessment and potential environmental impacts. We report that a bacterial community is capable of degrading 14C-labeled MWCNTs into 14CO2 in the presence of an external carbon source via co-metabolism. Multiple intermediate products were detected, and genotypic characterization revealed three possible microbial degraders: Burkholderia kururiensis, Delftia acidovorans, and Stenotrophomonas maltophilia. This result suggests that microbe/MWCNTs interaction may impact the long-term fate of MWCNTs. Highlights: •Mineralization of MWCNTs by a bacterial community was observed. •The mineralization required an external carbon source. •Multiple intermediate products were identified in the MWCNT degrading culture. •Three bacterial species were found likely responsible for MWCNT degradation. -- The 14C-labeled multiwall carbon nanotubes can be degraded to 14CO2 and other byproducts by a bacteria community under natural conditions

  6. Nitrogen acquisition in Agave tequilana from degradation of endophytic bacteria.

    Science.gov (United States)

    Beltran-Garcia, Miguel J; White, James F; Prado, Fernanda M; Prieto, Katia R; Yamaguchi, Lydia F; Torres, Monica S; Kato, Massuo J; Medeiros, Marisa H G; Di Mascio, Paolo

    2014-01-01

    Plants form symbiotic associations with endophytic bacteria within tissues of leaves, stems, and roots. It is unclear whether or how plants obtain nitrogen from these endophytic bacteria. Here we present evidence showing nitrogen flow from endophytic bacteria to plants in a process that appears to involve oxidative degradation of bacteria. In our experiments we employed Agave tequilana and its seed-transmitted endophyte Bacillus tequilensis to elucidate organic nitrogen transfer from (15)N-labeled bacteria to plants. Bacillus tequilensis cells grown in a minimal medium with (15)NH4Cl as the nitrogen source were watered onto plants growing in sand. We traced incorporation of (15)N into tryptophan, deoxynucleosides and pheophytin derived from chlorophyll a. Probes for hydrogen peroxide show its presence during degradation of bacteria in plant tissues, supporting involvement of reactive oxygen in the degradation process. In another experiment to assess nitrogen absorbed as a result of endophytic colonization of plants we demonstrated that endophytic bacteria potentially transfer more nitrogen to plants and stimulate greater biomass in plants than heat-killed bacteria that do not colonize plants but instead degrade in the soil. Findings presented here support the hypothesis that some plants under nutrient limitation may degrade and obtain nitrogen from endophytic microbes. PMID:25374146

  7. Endophytic degrader bacteria for improving phytoremediation of organic xenobiotics

    DEFF Research Database (Denmark)

    Karlson, U.; Trapp, Stefan; Lelie, D, van der;

    2003-01-01

    by improving their degradation during transport in the plant vascular system. Introducing endophytic degrader bacteria into the plants’ vascular system was proposed as a tool to achieve this goal. As a scientific necessity, the project comprised the thorough ecological and genetic investigation of endophytic....... Another potential spin-off of the project was the unexpected generation of constitutive TCE degraders, i.e., bacteria that do not require toluene or phenol for induction of cometabolic TCE degradation. Genetic engineering methods were not involved in the generation of this metabolic trait. The business...... bacteria, and the isolation of a large number of natural endophytic strains. The project delivered on this goal by providing a large collection of 150 novel characterized endophytic bacteria from poplar and willow, two plant species commonly used for phytoremediation, and from Flag Iris, a plant used...

  8. Anaerobic degradation of benzoate by sulfate-reducing bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Silva, S.P.; Adorno, M.A.T.; Moraes, E.M.; Varesche, M.B.A. [Sao Paulo Univ., Sao Carlos, SP (Brazil). Biological Processes Laboratory

    2004-07-01

    Anaerobic processes are an efficient way to degrade aromatic compounds in industrial wastewater, such as phenol, cresol and benzoate. This study characterized the bacteria that degrades benzoate, an anaerobic degradation intermediate of several complex aromatic compounds. In particular, the study assessed the capacity to use benzoate with sulfate reducing bacteria in mesophilic conditions. Biofilm from polyurethane foam matrices of a fixed bed reactor was used as the cellular inoculum to treat industrial wastewater containing organic peroxide. Dilution techniques were used to purify the material and obtain cultures of cocci. The benzoate consumption capacity in sulfidogenic conditions was observed when the purified inoculum was applied to batch reactors with different benzoate/sulfate relations. Results indicate that purification was positive to bacteria that can degrade aromatic compounds. Desulfococcus multivorans bacteria was identified following the physiologic and kinetic experiments. The 0.6 benzoate/sulfate relation was considered ideal for complete consumption of carbon and total use of sulfur. 10 refs., 3 figs.

  9. Biodegradation of Mixed PAHs by PAH-Degrading Endophytic Bacteria.

    Science.gov (United States)

    Zhu, Xuezhu; Ni, Xue; Waigi, Michael Gatheru; Liu, Juan; Sun, Kai; Gao, Yanzheng

    2016-01-01

    Endophytic bacteria can promote plant growth, induce plant defence mechanisms, and increase plant resistance to organic contaminants. The aims of the present study were to isolate highly PAH-degrading endophytic bacteria from plants growing at PAH-contaminated sites and to evaluate the capabilities of these bacteria to degrade polycyclic aromatic hydrocarbons (PAHs) in vitro, which will be beneficial for re-colonizing target plants and reducing plant PAH residues through the inoculation of plants with endophytic bacteria. Two endophytic bacterial strains P₁ (Stenotrophomonas sp.) and P₃ (Pseudomonas sp.), which degraded more than 90% of phenanthrene (PHE) within 7 days, were isolated from Conyza canadensis and Trifolium pretense L., respectively. Both strains could use naphthalene (NAP), PHE, fluorene (FLR), pyrene (PYR), and benzo(a)pyrene (B(a)P) as the sole sources of carbon and energy. Moreover, these bacteria reduced the contamination of mixed PAHs at high levels after inoculation for 7 days; strain P₁ degraded 98.0% NAP, 83.1% FLR, 87.8% PHE, 14.4% PYR, and 1.6% B(a)P, and strain P₃ degraded 95.3% NAP, 87.9% FLR, 90.4% PHE, 6.9% PYR, and negligible B(a)P. Notably, the biodegradation of PAHs could be promoted through additional carbon and nitrogen nutrients; therein, beef extract was suggested as the optimal co-substrate for the degradation of PAHs by these two strains (99.1% PHE was degraded within 7 days). Compared with strain P₁, strain P₃ has more potential for the use in the removal of PAHs from plant tissues. These results provide a novel perspective in the reduction of plant PAH residues in PAH-contaminated sites through inoculating plants with highly PAH-degrading endophytic bacteria. PMID:27517944

  10. Biodegradation of Mixed PAHs by PAH-Degrading Endophytic Bacteria

    Directory of Open Access Journals (Sweden)

    Xuezhu Zhu

    2016-08-01

    Full Text Available Endophytic bacteria can promote plant growth, induce plant defence mechanisms, and increase plant resistance to organic contaminants. The aims of the present study were to isolate highly PAH-degrading endophytic bacteria from plants growing at PAH-contaminated sites and to evaluate the capabilities of these bacteria to degrade polycyclic aromatic hydrocarbons (PAHs in vitro, which will be beneficial for re-colonizing target plants and reducing plant PAH residues through the inoculation of plants with endophytic bacteria. Two endophytic bacterial strains P1 (Stenotrophomonas sp. and P3 (Pseudomonas sp., which degraded more than 90% of phenanthrene (PHE within 7 days, were isolated from Conyza canadensis and Trifolium pretense L., respectively. Both strains could use naphthalene (NAP, PHE, fluorene (FLR, pyrene (PYR, and benzo(apyrene (B(aP as the sole sources of carbon and energy. Moreover, these bacteria reduced the contamination of mixed PAHs at high levels after inoculation for 7 days; strain P1 degraded 98.0% NAP, 83.1% FLR, 87.8% PHE, 14.4% PYR, and 1.6% B(aP, and strain P3 degraded 95.3% NAP, 87.9% FLR, 90.4% PHE, 6.9% PYR, and negligible B(aP. Notably, the biodegradation of PAHs could be promoted through additional carbon and nitrogen nutrients; therein, beef extract was suggested as the optimal co-substrate for the degradation of PAHs by these two strains (99.1% PHE was degraded within 7 days. Compared with strain P1, strain P3 has more potential for the use in the removal of PAHs from plant tissues. These results provide a novel perspective in the reduction of plant PAH residues in PAH-contaminated sites through inoculating plants with highly PAH-degrading endophytic bacteria.

  11. Isolation and identification of novel geosmin-degrading bacteria.

    Science.gov (United States)

    Xue, Qiang; Chen, Gang; Shimizu, Kazuya; Sakharkar, Meena Kishore; Utsumi, Motoo; Chen, Honghan; Li, Miao; Zhang, Zhenya; Sugiura, Norio

    2011-06-01

    Three novel geosmin-degrading bacteria were isolated from the sediments of Lake Kasumigaura, Japan. All strains were identified as Acinetobacter spp. by 16S rRNA gene sequence analysis and can biodegrade geosmin at an initial geosmin concentration of 2 mg/L after 2 days. Furthermore, at an initial geosmin concentration of 40 microg/L, geosmin removal was more than 68per cent by GSM-2 strain, and the degradation mechanism followed a pseudo-first-order mode. A rate constant of 0.026 reveals rapid geosmin degradation. This is the first report on geosmin degradation by by Acinetobacter spp.

  12. ISOLATION AND IDENTIFICATION OF ACR YLAMIDE DEGRADING BACTERIA FROM SOIL

    Directory of Open Access Journals (Sweden)

    Nidhi Jain

    2013-02-01

    Full Text Available Acrylamide is an aliphatic amide, which is produced by industrial processes and during heating of food. It is neurotoxic and a suspected carcinogen. In the present study an attempt was made to isolate acrylamide degrading bacteria from soil. The optimum growth conditions and physiological characteristics for the isolated acrylamide degrading bacteria were investigated. The isolated bacterium was identified as Bacillus clausii strain 1779 based on full 16S rRNA molecular phylogeny. The bacteria can degrade 800 mg l-1acrylamide after eight days of incubation with concomitant cell growth. In addition to above, it also grows optimally at a concentration of acrylamide between 500-2000 mg l-1between pH 8-10 and temperature and 25 – 45 0C. Thus the isolate would be useful in the bioremediation of environment from acrylamide in alkali conditions.

  13. 'Rare biosphere' bacteria as key phenanthrene degraders in coastal seawaters.

    Science.gov (United States)

    Sauret, Caroline; Séverin, Tatiana; Vétion, Gilles; Guigue, Catherine; Goutx, Madeleine; Pujo-Pay, Mireille; Conan, Pascal; Fagervold, Sonja K; Ghiglione, Jean-François

    2014-11-01

    By coupling DNA-SIP and pyrosequencing approaches, we identified Cycloclasticus sp. as a keystone degrader of polycyclic aromatic hydrocarbons (PAH) despite being a member of the 'rare biosphere' in NW Mediterranean seawaters. We discovered novel PAH-degrading bacteria (Oceanibaculum sp., Sneathiella sp.) and we identified other groups already known to possess this function (Alteromonas sp., Paracoccus sp.). Together with Cycloclasticus sp., these groups contributed to potential in situ phenanthrene degradation at a rate >0.5 mg l(-1) day(-1), sufficient to account for a considerable part of PAH degradation. Further, we characterized the PAH-tolerant bacterial communities, which were much more diverse in the polluted site by comparison to unpolluted marine references. PAH-tolerant bacteria were also members of the rare biosphere, such as Glaciecola sp. Collectively, these data show the complex interactions between PAH-degraders and PAH-tolerant bacteria and provide new insights for the understanding of the functional ecology of marine bacteria in polluted waters.

  14. Isolation and identification of Profenofos degrading bacteria

    Directory of Open Access Journals (Sweden)

    Saadatullah Malghani

    2009-12-01

    Full Text Available An enrichment culture technique was used to isolate bacterial strains responsible for the biodegradation of profenofos in a soil from Hubei province of central China. Two pure bacterial cultures, named W and Y, were isolated and subsequently characterized by sequencing of 16S rRNA genes and biochemical tests. Isolate W showed 96% similarity to the 16S rRNA gene of a Pseudomonas putida unlike Y which showed 99% similarity to the 16S rRNA gene of Burkholderia gladioli. Both strains grew well at pH 5.5-7.2 with a broad temperature profile ranging from 28º to 36 ºC. Bioremediation of profenofos-contaminated soil was examined using soil treated with 200 ug g-1; profenofos resulted in a higher degradation rate than control soils without inoculation. In a mineral salt medium (FTW reduction in profenofos concentration was 90% within 96 hours of incubation. A literature survey revealed that no data is available regarding the role of Burkholderia gladioli on pesticide biodegradation as well as on profenofos.

  15. Biotransformation of geosmin by terpene-degrading bacteria.

    Science.gov (United States)

    Two terpene-degrading bacteria that are able to transform geosmin have been identified. Pseudomonas sp. SBR3-tpnb, isolated on -terpinene, converts geosmin to several products; the major products are keto-geosmins. This geosmin transformation ability is inducible by -terpinene. Rhodococcus wratisl...

  16. Biotransformations of 2-methylisoborneol by camphor-degrading bacteria.

    Science.gov (United States)

    Many camphor-degrading bacteria that are able to transform 2-methylisoborneol (MIB) have been identified. Three strains representative of these, have been examined in detail. Rhodococcus ruber T1 metabolizes camphor through 6-hydroxycamphor, but converts MIB to 2,3-dihydroxy-2-methylbornane. Pseu...

  17. Cariogenic bacteria degrade dental resin composites and adhesives.

    Science.gov (United States)

    Bourbia, M; Ma, D; Cvitkovitch, D G; Santerre, J P; Finer, Y

    2013-11-01

    A major reason for dental resin composite restoration replacement is related to secondary caries promoted by acid production from bacteria including Streptococcus mutans (S. mutans). We hypothesized that S. mutans has esterase activities that degrade dental resin composites and adhesives. Standardized specimens of resin composite (Z250), total-etch (Scotchbond Multipurpose, SB), and self-etch (Easybond, EB) adhesives were incubated with S. mutans UA159 or uninoculated culture medium (control) for up to 30 days. Quantification of the BisGMA-derived biodegradation by-product, bishydroxy-propoxy-phenyl-propane (BisHPPP), was performed by high-performance liquid chromatography. Surface analysis of the specimens was performed by scanning electron microscopy (SEM). S. mutans was shown to have esterase activities in levels comparable with those found in human saliva. A trend of increasing BisHPPP release throughout the incubation period was observed for all materials and was more elevated in the presence of bacteria vs. control medium for EB and Z250, but not for SB (p < .05). SEM confirmed the increased degradation of all materials with S. mutans UA159 vs. control. S. mutans has esterase activities at levels that degrade resin composites and adhesives; degree of degradation was dependent on the material's chemical formulation. This finding suggests that the resin-dentin interface could be compromised by oral bacteria that contribute to the progression of secondary caries.

  18. Biotransformations of (+/-)-geosmin by terpene-degrading bacteria.

    Science.gov (United States)

    Eaton, Richard W; Sandusky, Peter

    2010-02-01

    Two terpene-degrading bacteria able to transform (+/-)-geosmin have been identified. Pseudomonas sp. SBR3-tpnb, following growth on gamma-terpinene, converts (+/-)-geosmin to several products; the major products are ketogeosmins. Rhodococcus wratislaviensis DLC-cam, isolated on D-camphor, also converts (+/-)-geosmin to several oxidation products, primarily ketogeosmins identical to those produced by strain SBR3-tpnb as well as hydroxygeosmins. This conversion appears to be inducible by (+/-)-geosmin and not by D-camphor.

  19. Straw bio-degradation by acidogenic bacteria and composite fungi

    Institute of Scientific and Technical Information of China (English)

    ZHANG Ke-qiang; CHEN Xiu-wei; JI Min; NING An-rong; FAN Huan; ZHOU Ke

    2004-01-01

    A composite microbial system, including a strain of Candida tropicalis ( W3 ), a strain of Lactobacillus plantarm(WY3) and three strains of basidiomycete pL104, pL113 and C33, was chosen to degrade corn straw.The final pH was acid owing to the inoculation of acidogenic bacteria, and under this condition the composite fungi system could produce complex enzyme to destroy the compact structure of corn straw. The experimental results showed that the biomass of composite fungi could reach up to maximum when the pH value was 4.5. Through the bio-degradation by combining acidogenic bacteria with the composite fungi system, the cellulose, hemi-cellulose and lignin degradation rates of corn straw powder were 26.36%, 43.30% and 26.96%, respectively. And the gross crude protein content increased 60.41%. This study provided the evidence for the feasibility of developing a composite microbial system with high capability of degrading straw lignocelluloses in order to make reasonable use of straw resource and protect rural eco-environment.

  20. Anaerobic degradation of benzene by marine sulfate-reducing bacteria

    Science.gov (United States)

    Musat, Florin; Wilkes, Heinz; Musat, Niculina; Kuypers, Marcel; Widdel, Friedrich

    2010-05-01

    Benzene, the archetypal aromatic hydrocarbon is a common constituent of crude oil and oil-refined products. As such, it can enter the biosphere through natural oil seeps or as a consequence of exploitation of fossil fuel reservoirs. Benzene is chemically very stable, due to the stabilizing aromatic electron system and to the lack of functional groups. Although the anaerobic degradation of benzene has been reported under denitrifying, sulfate-reducing and methanogenic conditions, the microorganisms involved and the initial biochemical steps of degradation remain insufficiently understood. Using marine sediment from a Mediterranean lagoon a sulfate-reducing enrichment culture with benzene as the sole organic substrate was obtained. Application of 16S rRNA gene-based methods showed that the enrichment was dominated (more than 85% of total cells) by a distinct phylotype affiliated with a clade of Deltaproteobacteria that include degraders of other aromatic hydrocarbons, such as naphthalene, ethylbenzene and m-xylene. Using benzoate as a soluble substrate in agar dilution series, several pure cultures closely related to Desulfotignum spp. and Desulfosarcina spp. were isolated. None of these strains was able to utilize benzene as a substrate and hybridizations with specific oligonucleotide probes showed that they accounted for as much as 6% of the total cells. Incubations with 13C-labeled benzene followed by Halogen in situ Hybridization - Secondary Ion Mass Spectroscopy (HISH-SIMS) analysis showed that cells of the dominant phylotype were highly enriched in 13C, while the accompanying bacteria had little or no 13C incorporation. These results demonstrate that the dominant phylotype was indeed the apparent benzene degrader. Dense-cell suspensions of the enrichment culture did not show metabolic activity toward added phenol or toluene, suggesting that benzene degradation did not proceed through anaerobic hydroxylation or methylation. Instead, benzoate was identified in

  1. Enumeration and phylogenetic analysis of polycyclic aromatic hydrocarbon-degrading marine bacteria from Puget sound sediments.

    OpenAIRE

    Geiselbrecht, A D; Herwig, R P; Deming, J. W.; Staley, J T

    1996-01-01

    Naphthalene- and phenanthrene-degrading bacteria in Puget Sound sediments were enumerated by most-probable-number enumeration procedures. Sediments from a creosote-contaminated Environmental Protection Agency Superfund Site (Eagle Harbor) contained from 10(4) to 10(7) polycyclic aromatic hydrocarbon (PAH)-degrading bacteria g (dry weight) of sediment-1, whereas the concentration at an uncontaminated site ranged from 10(3) to 10(4) g of sediment(-1). Isolates of PAH-degrading bacteria were obt...

  2. Isolation and characterization of endosulfan-degrading bacteria from contaminated agriculture soils

    Directory of Open Access Journals (Sweden)

    Mehdi Hassanshahian

    2016-04-01

    Full Text Available Objective: To isolate and characterize endosulfan-degrading bacteria from Kerman pistachio orchards. Methods: Endosulfan-degrading bacteria were enriched in Bushnell-Hass medium. Identification and sequencing of prevalent degrading strains was performed by using PCR based on amplifying 16S rDNA. Results: The results showed that the soils of pistachio orchards have some degrading bacteria that are suitable for elimination of endosulfan from soils and the environment. Four endosulfandegrading bacteria strains belong to Achromobacter xylosoxidans (strain EN3, Pseudomonas azotoformans (strain EN4, Pseudomonas brassicacearum (strain EN7 and Pseudomonas thivervalensis (strain EN8, respectively. The best degrading strain (EN7, up to 100 mg/L, illustrated a good growth, whereas the growth was reduced in concentration higher than 100 mg/L. The results of gas chromatography confirmed the decomposition of organic pesticide by degrading-bacteria. Conclusions: By using these strains and other biological reclamation methods we can eliminate bio-environmental problems.

  3. Sorption and Oxic Degradation of the Explosive CL-20 During Transport in Subsurface Sediments

    Energy Technology Data Exchange (ETDEWEB)

    Szecsody, Jim E.; Girvin, Donald C.; Devary, Brooks J.; Campbell, James A.

    2004-08-15

    The abiotic sorption and oxic degradation processes that control the fate of the explosive CL-20, Hexanitrohexaazaisowurtzitane, in the subsurface environment were investigated to determine the potential for vadose and groundwater contamination. Sorption of CL-20 is relatively small (Kd = 0.02 to 4.2 cm3 g-1, 7 low organic carbon sediments, 12 minerals), which results in only slight retardation relative to water, so CL-20 could move quickly through unsaturated and saturated sediments to groundwater. Sorption was mainly to mineral surfaces for these low organic carbon sediments, and the resulting isotherm was nonlinear. CL-20 abiotically degrades in an oxic environment at slow rates (i.e., 10s to 100s of hours) with a wide variety of minerals, but at fast rates (i.e., minutes) in the presence of 2:1 clays (biotite, hectorite, montmorillonite, illite), ferrous iron oxides (i.e., magnetite) and manganous oxide. High concentrations of surface ferrous iron degraded CL-20 the fastest, but 2:1 clays containing no structural or adsorbed ferrous iron (hectorite) could also quickly degrade CL-20. Products of CL-20 oxic degradation included three high molecular weight compounds and anions (nitrite and formate). The 2 to 3.5 moles of nitrite produced suggests the CL-20 cage remains intact. Identification of further degradation products and CL-20 mineralization rates is needed to fully assess the impact of these CL-20 transformation rates on the risk of CL-20 (and degradation product) subsurface movement.

  4. Sorption and oxic degradation of the explosive CL-20 during transport in subsurface sediments.

    Science.gov (United States)

    Szecsody, J E; Girvin, D C; Devary, B J; Campbell, J A

    2004-08-01

    The abiotic sorption and oxic degradation processes that control the fate of the explosive CL-20, Hexanitrohexaazaisowurtzitane, in the subsurface environment were investigated to determine the potential for vadose and groundwater contamination. Sorption of aqueous CL-20 is relatively small (K(d) = 0.02-3.83 cm3 g(-1) for 7 sediments and 12 minerals), which results in only slight retardation relative to water movement. Thus, CL-20 could move quickly through unsaturated and saturated sediments of comparable composition to groundwater, similar to the subsurface behavior of RDX. CL-20 sorption was mainly to mineral surfaces of the sediments, and the resulting isotherm was nonlinear. CL-20 abiotically degrades in oxic environments at slow rates (i.e., 10s to 100s of hours) with a wide variety of minerals, but at fast rates (i.e., minutes) in the presence of 2:1 phyllosilicate clays (hectorite, montmorillonite, nontronite), micas (biotite, illite), and specific oxides (MnO2 and the ferrous-ferric iron oxide magnetite). High concentrations of surface ferrous iron in a dithionite reduced sediment degraded CL-20 the fastest (half-life CL-20 (half-life CL-20 degradation rates were slower in natural sediments (half-life 3-800 h) compared to minerals. Sediments with slow degradation rates and small sorption would exhibit the highest potential for deep subsurface migration. Products of CL-20 oxic degradation included three high molecular weight compounds and anions (nitrite and formate). The 2-3.5 moles of nitrite produced suggest CL-20 nitro-groups are degraded, and the amount of formate produced (0.2-1.2 moles) suggests the CL-20 cage structure is broken in some sediments. Identification of further degradation products and CL-20 mineralization rates is needed to fully assess the impact of these CL-20 transformation rates on the risk of CL-20 (and degradation product) subsurface movement. PMID:15212902

  5. Isolation of Soil Bacteria Species for Degrading Dibenzothiophene

    Institute of Scientific and Technical Information of China (English)

    JIANGChengying; LIUHuizhou; 等

    2002-01-01

    Five bacterial strains,which are able to grow and to disintegrate dibenzothiophene (DBT) and dibenzothiophene sulfone (DBTO2) in fossil fuels,are isolated.Analysis of products of DBT metabolized by these strains shows that different bacteria strains oxidize DBT by different pathways.The isolated strains R-6,R-16,R-9 and R-8 can metabolize DBT to DBTO2 and 2-hydroxybiphenyl(HBP),which are identified as Bacillus brevis,Bacillus sphaericus,Nocardia globerula and Pseudomonas delafieldii respectively.Another strain R-12 identified as Pseudomonas sp. can degrade DBT completely but it cannot produce DBTO2 and HBP. The optimum temperature and initial pH for desulfurization by R-8 are 32℃ and 7.02 respectively and pH of the broth decreases during biodegradation.The growth of strain R-8 with different sulfur-sources indicates that this strain in DBT medium has an induction period of 3 days,which is longer than those with dimethylsulfoxide and MgSO4 media,but the growth rate of the bacterial strain in DBT is higher after the induction.Higher growth and desulfurization rates are observed in the DBT-hexadecane system than in both DBT-ethanol and DBT-dimethylformamide systems.Both strains of R-8 and R-9 also show higher desulfurization activities toward other sulfur-substrates,indicating that they have greater desulfurization potential in application.

  6. Different Abilities of Eight Mixed Cultures of Methane-oxidizing Bacteria to Degrade TCE

    DEFF Research Database (Denmark)

    Broholm, Kim; Christensen, Thomas Højlund; Jensen, Bjørn K.

    1993-01-01

    The ability of eight mixed cultures of methane-oxidizing bacteria to degrade trichloroethylene (TCE) was examined in laboratory batch experiments. This is one of the first reported works studying TCE degradation by mixed cultures of methane-oxidizing bacteria at 10°C, a common temperature for soils...... and groundwaters. Only three of the eight mixed cultures were able to degrade TCE, or to degrade TCE fast enough to result in a significant removal of TCE within the experimental time, when the cultures used methane as growth substrate. The same three mixed cultures were able to degrade TCE when they oxidized...... methanol, but only for a limited time period of about 5 days. Several explanations for the discontinued degradation of TCE are given. An experiment carried out to re-activate the methane-oxidizing bacteria after 8 days of growth on methanol by adding methane did not immediately result in degradation...

  7. Aromatic Hydrocarbons: Degrading Bacteria in the Desert Soil of Kuwait

    International Nuclear Information System (INIS)

    Soil samples of different levels of oil pollutants were collected from Kuwait's Burgan Oil Field, near an oil lake. The samples represented, highly polluted (8.0% w/w), moderately polluted (2.1%-3.4%) and slightly polluted (2.1%-3.4%) and slightly polluted (0.5- 0.8%). The aromatic fractions of the collected samples were in the range of (0.21-2.57g/100g) soil. (GC) analysis of the aromatic fractions of the resolution of the different individual (PAHs) revealed the presence of (16) different (PAHs) resolved from the aromatic fraction of the highly polluted sample (S3). (15), (14) and (13) individual (PAHs) were identified soil samples (S5), (S2) and (S1, S4, S6) respectively. The most frequent (PAH) was indeno (1, 2, 3-c, d) pyrene (22.5%-45.11%) followed chrysene (13.6%-19.48%). Eight carcinogenic (PAHs) were resolved from the aromatic fractions of the polluted samples. Total carcinogenic (PAHs) recorded in this study were in this study were in the range of (11.53) (forS4) - (510.98) (for S3) ppm. The counts of (CFU) of aromatic degraders (AD) were in the range of (3x10) - (110x 10) (CFU/g) soil (with a percent of (2.2%-69.6%)). The results show that, higher counts of (AD) were recorded from a highly polluted sample (S3), followed by the moderately polluted samples; total of (51) bacteria, that gave presumptive positive biodegradation activities, were isolated and identified (45.1%) of them were isolated and identified. (45.1%) of them were isolated from the highly polluted sample (S3). Total of (13) different species were identified of which Micrococcus luteus was more frequent (23.5) followed by Bacillus licheniformis (19.6%) and Bacillus subtilis (11.8%). The three Pseudomonas species collectively were presented by (11.8%). Five different species proved to be of good activities, they are: Bacillus brevis, Bacillus lichenoformis, Pseudomonas aeruginosa, Pseudomonas stutzeri and Pseudomonas flourescens. The ability of five species and their mixture was

  8. Selection of the Bacteria Being Able to Degrade Kerosene and Study on the Growth Conditions of the Bacteria

    Institute of Scientific and Technical Information of China (English)

    LI; Ping; ZHUO; Feng-ping; GAO; Li-hong; CAI; Ming

    2012-01-01

    [Objective] The study aimed at selecting the predominant strains being able to degrade kerosene and studying its best growth conditions. [Method] Choosing kerosene as the only carbon source, we selected and separated the predominant strains being able to degrade kerosene from the contaminated soil near petrochemical plants, and then optimized the grow conditions of the bacteria. [Result] The best conditions for the bacteria growth were determined as follows, that is, temperature was 30 ℃, pH=7, salinity was 2.5%, and the rotational speed of the thermostatic shake was 190 r/min. Under the optimal conditions, the degradation rate of kerosene by the bacteria cultured for three days reached 42.6%. [Conclusion] The research could provide scientific references for the restoration of polluted soil by kerosene.

  9. Degradation of Bermuda and Orchard Grass by Species of Ruminal Bacteria

    OpenAIRE

    Akin, Danny E.; Rigsby, Luanne L.

    1985-01-01

    Fiber degradation in Bermuda grass and orchard grass was evaluated gravimetrically and by scanning and transmission electron microscopy after incubation with pure cultures of rumen bacteria. Lachnospira multiparus D-32 was unable to degrade plant cell wall components. Butyrivibrio fibrisolvens 49 degraded 6 and 14.9% of the fiber components in Bermuda grass and orchard grass, respectively, and Ruminococcus albus 7 degraded 11.4% orchard grass fiber but none in Bermuda grass. Both B. fibrisolv...

  10. Microbial Degradation of Polycyclic Aromatic Hydrocarbons and Characterization of Bacteria

    Science.gov (United States)

    Tikilili, P. V.; Chirwa, E. M. N.

    2010-01-01

    Biodegradation of polycyclic aromatic hydrocarbons was studied. Naphthalene was used as a model compound to represent these compounds. Low initial concentrations of naphthalene in a range of 30-60 mg/L were completely degraded after incubation for 15 hrs by consortia from a landfill soil while consortia from minewater took more that 29 hrs to reach complete degradation.

  11. Isolation and characterization of endosulfan-degrading bacteria from contaminated agriculture soils

    Institute of Scientific and Technical Information of China (English)

    Mehdi Hassanshahian; Zahra Shahi

    2016-01-01

    Objective: To isolate and characterize endosulfan-degrading bacteria from Kerman pistachio orchards. Methods: Endosulfan-degrading bacteria were enriched in Bushnell-Hass medium. Identification and sequencing of prevalent degrading strains was performed by usingPCR based on amplifying16S rDNA. Results: The results showed that the soils of pistachio orchards have some degrading bacteria that are suitable for elimination of endosulfan from soils and the environment. Four endosulfan-degrading bacteria strains belong toAchromobacter xylosoxidans (strain EN3),Pseudomonas azotoformans (strain EN4),Pseudomonas brassicacearum (strain EN7) andPseudomonas thivervalensis (strain EN8), respectively. The best degrading strain (EN7), up to 100 mg/L, illustrated a good growth, whereas the growth was reduced in concentration higher than 100 mg/L. The results of gas chromatography confirmed the decomposition of organic pesticide by degrading-bacteria. Conclusions: By using these strains and other biological reclamation methods we can eliminate bio-environmental problems.

  12. Enrichment and isolation of crude oil degrading bacteria from some mussels collected from the Persian Gulf.

    Science.gov (United States)

    Bayat, Zeynab; Hassanshahian, Mehdi; Hesni, Majid Askari

    2015-12-15

    To date, little is known about existing relationships between mussels and bacteria in hydrocarbon-contaminated marine environments. The aim of this study is to find crude oil degrading bacteria in some mussels at the Persian Gulf. Twenty eight crude oil degrading bacteria were isolated from three mussels species collected from oil contaminated area at Persian Gulf. According to high growth and degradation of crude oil four strains were selected between 28 isolated strains for more study. Determination the nucleotide sequence of the gene encoding for 16S rRNA show that these isolated strains belong to: Shewanella algae isolate BHA1, Micrococcus luteus isolate BHA7, Pseudoalteromonas sp. isolate BHA8 and Shewanella haliotis isolate BHA35. The residual crude oil in culture medium was analysis by Gas Chromatography (GC). The results confirmed that these strains can degrade: 47.24%, 66.08%, 27.13% and 69.17% of crude oil respectively. These strains had high emulsification activity and biosurfactant production. Also, the effects of some factors on crude oil degradation by isolated strains were studied. The results show that the optimum concentration of crude oil was 2.5% and the best degradation take place at 12% of salinity. This research is the first reports on characterization of crude oil degrading bacteria from mussels at Persian Gulf and by using of these bacteria in the field the effect of oil pollution can be reduce on this marine environment. PMID:26581816

  13. Enrichment and isolation of crude oil degrading bacteria from some mussels collected from the Persian Gulf.

    Science.gov (United States)

    Bayat, Zeynab; Hassanshahian, Mehdi; Hesni, Majid Askari

    2015-12-15

    To date, little is known about existing relationships between mussels and bacteria in hydrocarbon-contaminated marine environments. The aim of this study is to find crude oil degrading bacteria in some mussels at the Persian Gulf. Twenty eight crude oil degrading bacteria were isolated from three mussels species collected from oil contaminated area at Persian Gulf. According to high growth and degradation of crude oil four strains were selected between 28 isolated strains for more study. Determination the nucleotide sequence of the gene encoding for 16S rRNA show that these isolated strains belong to: Shewanella algae isolate BHA1, Micrococcus luteus isolate BHA7, Pseudoalteromonas sp. isolate BHA8 and Shewanella haliotis isolate BHA35. The residual crude oil in culture medium was analysis by Gas Chromatography (GC). The results confirmed that these strains can degrade: 47.24%, 66.08%, 27.13% and 69.17% of crude oil respectively. These strains had high emulsification activity and biosurfactant production. Also, the effects of some factors on crude oil degradation by isolated strains were studied. The results show that the optimum concentration of crude oil was 2.5% and the best degradation take place at 12% of salinity. This research is the first reports on characterization of crude oil degrading bacteria from mussels at Persian Gulf and by using of these bacteria in the field the effect of oil pollution can be reduce on this marine environment.

  14. Crude oil degradation by phosphate-solubilizing bacteria

    Digital Repository Service at National Institute of Oceanography (India)

    DeSouza, M.J.B.D.; Nair, S.; David, J.J.; Chandramohan, D.

    Phosphate-solubilizing bacteria were isolated from tropical areas around the Indian peninsula. Two of the isolates showed high phosphatase activity. The isolates were identified as Klebsiella pneumoniae and Bacillus pumilus, and they showed high...

  15. Effect of steam explosion and microbial fermentation on cellulose and lignin degradation of corn stover.

    Science.gov (United States)

    Chang, Juan; Cheng, Wei; Yin, Qingqiang; Zuo, Ruiyu; Song, Andong; Zheng, Qiuhong; Wang, Ping; Wang, Xiao; Liu, Junxi

    2012-01-01

    In order to increase nutrient values of corn stover, effects of steam explosion (2.5 MPa, 200 s) and Aspergillus oryzae (A. oryzae) fermentation on cellulose and lignin degradation were studied. The results showed the contents of cellulose, hemicellulose and lignin in the exploded corn stover were 8.47%, 50.45% and 36.65% lower than that in the untreated one, respectively (Pcorn stover (EFCS) were decreased by 24.36% and 69.90%, compared with the untreated one (Pcorn stover. The activities of enzymes in EFCS were increased. The metabolic experiment showed that about 8% EFCS could be used to replace corn meal in broiler diets, which made EFCS become animal feedstuff possible.

  16. Naturally occurring phenanthrene degrading bacteria associated with seeds of various plant species.

    Science.gov (United States)

    Fernet, Jennifer L; Lawrence, John R; Germida, James J

    2016-01-01

    Seeds of 11 of 19 plant species tested yielded naturally occurring phenanthrene degrading bacteria when placed on phenanthrene impression plates. Seed associated phenanthrene degrading bacteria were mostly detected on caragana, Canada thistle, creeping red fescue, western wheatgrass, and tall wheat grass. Based on 16S rRNA analysis the most common bacteria isolated from these seeds were strains belonging to the genera Enterobacteria, Erwinia, Burkholderia, Pantoea, Pseudomonas, and Sphingomonas. These plants may provide an excellent source of pre-adapted bacterial-plant associations highly suitable for use in remediation of contaminated soil environments.

  17. GFP Reporter Screens for the Engineering of Amino Acid Degrading Enzymes from Libraries Expressed in Bacteria

    OpenAIRE

    Paley, Olga; Agnello, Giulia; Cantor, Jason; Yoo, Tae Hyun; Georgiou, George; Stone, Everett

    2013-01-01

    There is significant interest in engineering human amino acid degrading enzymes as non-immunogenic chemotherapeutic agents. We describe a high-throughput fluorescence activated cell sorting (FACS) assay for detecting the catalytic activity of amino acid degrading enzymes in bacteria, at the single cell level. This assay relies on coupling the synthesis of the GFP reporter to the catalytic activity of the desired amino acid degrading enzyme in an appropriate E. coli genetic background. The met...

  18. Impact of Inoculation Protocols, Salinity, and pH on the Degradation of Polycyclic Aromatic Hydrocarbons (PAHs) and Survival of PAH-Degrading Bacteria Introduced into Soil

    OpenAIRE

    Kästner, Matthias; Breuer-Jammali, Maren; Mahro, Bernd

    1998-01-01

    Degradation of polycyclic aromatic hydrocarbons (PAHs) and survival of bacteria in soil was investigated by applying different inoculation protocols. The soil was inoculated with Sphingomonas paucimobilis BA 2 and strain BP 9, which are able to degrade anthracene and pyrene, respectively. CFU of soil bacteria and of the introduced bacteria were monitored in native and sterilized soil at different pHs. Introduction with mineral medium inhibited PAH degradation by the autochthonous microflora a...

  19. Isolation and characterization of gasoline-degrading bacteria from gas station leaking-contaminated soils

    Institute of Scientific and Technical Information of China (English)

    LU Si-jin; WANG Hong-qi; YAO Zhi-hua

    2006-01-01

    The effects of culture conditions in vitro and biosurfactant detection were studied on bacterial strains capable of degrading gasoline from contaminated soils near gas station. The main results were summarized as follows. Three bacteria (strains Q10, Q14 and Q18) that were considered as efficiently degrading strains were isolated and identified as Pseudomonas sp., Flavobacterium sp. and Rhodococcus sp., respectively. The optimal growth conditions of three bacteria including pH, temperature and the concentration of gasoline were similar. The reduction in surface tension was observed with all the three bacteria, indicating the production of toluene, ethylbenzene and xylene (BTEX) could easily be degraded by the three isolates. The consortium was more effective than the individual cultures in degrading added gasoline, diesel oil, and BTEX. These results indicate that these strains have great potential for in situ remediation of soils contaminated by gas station leaking.

  20. Identification of soil bacteria able to degrade phenanthrene bound to a hydrophobic sorbent in situ

    International Nuclear Information System (INIS)

    Efficient bioremediation of PAH-contaminated sites is limited by the hydrophobic character and poor bioavailability of pollutants. In this study, stable isotope probing (SIP) was implemented to track bacteria that can degrade PAHs adsorbed on hydrophobic sorbents. Temperate and tropical soils were incubated with 13C-labeled phenanthrene, supplied by spiking or coated onto membranes. Phenanthrene mineralization was faster in microcosms with PAH-coated membranes than in microcosms containing spiked soil. Upon incubation with temperate soil, phenanthrene degraders found in the biofilms that formed on coated membranes were mainly identified as Sphingomonadaceae and Actinobacteria. In the tropical soil, uncultured Rhodocyclaceae dominated degraders bound to membranes. Accordingly, ring-hydroxylating dioxygenase sequences recovered from this soil matched PAH-specific dioxygenase genes recently found in Rhodocyclaceae. Hence, our SIP approach allowed the detection of novel degraders, mostly uncultured, which differ from those detected after soil spiking, but might play a key role in the bioremediation of PAH-polluted soils. -- Highlights: •Soil bacteria with the ability to degrade sorbent-bound PAHs were investigated. •In soil, membrane-bound phenanthrene was readily mineralized. •PAH degraders found in biofilms were different in temperate and tropical soils. •Uncultured Rhodocyclaceae were dominant phenanthrene degraders in the tropical soil. •PAH-specific ring-hydroxylating dioxygenase sequences were identified in soil DNA. -- Bacteria able to degrade PAHs bound to a hydrophobic sorbent were mainly identified as uncultured Rhodocyclaceae and Sphingomonadaceae in polluted soils from tropical and temperate area, respectively

  1. Isolation and preliminary characterization of a 3-chlorobenzoate degrading bacteria

    Institute of Scientific and Technical Information of China (English)

    QI Yun; ZHAO Lin; OJEKUNLE Z.Olusheyi; TAN Xin

    2007-01-01

    A study Was conducted to compare the diversity of 2-,3-,and 4-chlorobenzoate degraders in two pristine soils and one contaminated sewage sludge.These samples contained strikingly different populations of mono-chlorobenzoate degraders.Although fewer cultures were isolated in the uncontaminated soils than contaminated one,the ability of microbial populations to mineralize chlorobenzoate was widespread.The 3-and 4-chlorobenzoate degraders were more diverse than me 2-chlorobenzoate degraders.One of the strains isolated from the sewage sludge was obtained.Based on its phenotype.chemotaxonomic properties and 16S rRNA gene,the organism S-7was classified as Rhodococcus erythropolis.The strain can grow at temperature from 4 to 37℃.C.It can utilize several(halo)aromatic compounds.Moreover,strain S-7 can grow and use 3-chlorobenzoate as sole carbon source in a temperatures range of 10-30℃ with stoichiometric release of chloride ions.The psychrotolerant ability was significant for bioremediation in low temperature regions.Catechol and chlorocatechol 1,2-dioxygenase activities were present in cell free extracts of the strain,but no(chloro)catechol 2,3-dioxygenase activities was detected.Spectral conversion assays with extracts from R.erythropolis S-7 showed accumulation of a compound with a similar UV spectrum as chloro-cis,cis-muconate from 3-chlorobenzoate.On the basis of these results,we proposed that S-7 degraded 3-chlorobenzoate through the modified ortho-cleave pathway.

  2. Isolation and characterization of Fenitrothion-degrading bacteria from pestachio gardens in Kerman Provinance

    Directory of Open Access Journals (Sweden)

    Mehrnosh Ghafari

    2014-07-01

    Full Text Available   Introduction : Pesticides with complex structure have high persistence in ecosystem and biosphere. Pesticides have harmful effects on farmlands, human and natural resources.   Materials and methods: In this study for isolation of pesticide-degrading bacteria (Fenitrothion soil samples were collected from pistachio gardens in Kerman province. Collected soil samples were enriched in Bushnell Hass medium with this pesticide as only carbon and energy source. Isolated bacteria were identified by amplification of 16S rDNA gene by PCR and sequencing .   Results : In this study three Fenitrothion -degrading bacterial strains were isolated. These isolated bacteria were identified as: Pseudomonas fluorescens strain F1 ، Bacillus cereus strain F3 and pseudomonas aeruginosa strain F4 . The effects of pesticides concentration on each dominant bacterial strain were investigated. For Fenitrothion degrading bacterium (F4 strain growth continue until 100 ppm and then decreased. The result of Gas Chromatography (GC analysis confirmed the biodegradation ability of selected bacterial strains .   Discussion and conclusion : The results of this study demonstrated that there is a diversity of pesticide-degrading bacteria (Fenitrothion in soil ecosystem farmlands of Kerman province. It is seemed by application of these pesticide-degrading bacteria in farmlands and using bioremediation technique the ecosystem contamination of pesticide can be decreased.

  3. Comparative proteome analysis of butachlor-degrading bacteria

    Science.gov (United States)

    Wang, Jinhua; Lu, Yitong; Chen, Yingying

    2008-01-01

    A Pseudomonas putida strain, named ER1, was isolated from an agricultural soil and found to actively degrade the herbicide butachlor. The enzyme extracted from ER1 could degrade butachlor. Furthermore, incubation of ER1 in a medium containing 50 mg/kg of butachlor after 3 days resulted in the high butachlor-degrading enzyme activity of ER1. Response of ER1 to butachlor might be related to changes in protein composition at both quantitative and qualitative levels. Total proteins were extracted from control strain (incubated in the medium without butachlor) and the treated strain (incubated in the medium with butachlor). The proteins were separated by two-dimensional gel electrophoresis. Of the total number of ER1 protein, 11 spots were significantly changed under butachlor stress. Analysis by matrix-assisted laser desorption/ionization mass spectrometry and tandem mass spectrometry coupled with database searching allowed the function of some proteins which were similar to the hydrolases activity or oxidoreductase activity.

  4. Cultivation-independent identification of candidate dehalorespiring bacteria in tetrachloroethylene degradation.

    Science.gov (United States)

    Yamasaki, Shouhei; Nomura, Nobuhiko; Nakajima, Toshiaki; Uchiyama, Hiroo

    2012-07-17

    Tetrachloroethylene (PCE) is one of the major pollutants and is degraded by dissimilation by dehalorespiring bacteria. The dehalorespiring bacteria are anaerobic, and most cannot be cultured by conventional agar plating methods. Therefore, to identify the dehalorespiring bacteria that dissimilatively degrade PCE, a cultivation-independent method is required. To achieve accurate and detailed analysis of the bacteria, we developed a novel stable isotope probing (SIP) method. This technique involves 2 steps, namely, a labeling step, in which a labeled carbon source is incorporated into the sample's DNA, and an analysis step, in which the DNA is isolated, fractionated, and analyzed by polymerase chain reaction denaturing gradient gel electrophoresis (PCR-DGGE). Subsequently, 16S rRNA sequencing and phylogenetic analysis were performed to identify the bacteria. Initially, we examined the effectiveness of this method by using Dehalococcoides ethenogenes 195 consortium as a defined model system. The result indicated the method was able to correctly identify the dehalorespiring bacteria D. ethenogenes 195 from the consortium. Moreover, in an artificially contaminated microcosm experiment, we confirmed that the method was able to identify the indigenous dehalorespiring bacteria Dehalobacter sp. Thus, we concluded that this novel method was a feasible tool to identify dehalorespiring bacteria in natural environments.

  5. Photo-assisted electrochemical detection (PAED) following HPLC-UV for the determination of nitro explosives and degradation products

    Science.gov (United States)

    Fedorowski, J.; LaCourse, William R.; Lorah, Michelle M.

    2012-06-01

    Continuous efforts implemented by government agencies such as the United States Geological Survey (USGS) aim to manage and protect the integrity of the environment's natural resources. RDX is one of the most frequently utilized nitramine explosives for mining, demolition and munitions purposes in the United States (US). The degradation of RDX in natural environments is of particular importance as a result of the accumulation of consequential degradation products in nature. Specifically, RDX has the potential to be degraded by microorganisms resulting in hazardous levels of harmful degradation products in soil and groundwater. The necessity for the detection of these particular degradation products is emphasized as a consequence of their toxicity as these products are recognized as potential mutagens. Photo-assisted electrochemical detection (PAED) following HPLC-UV is used to develop an analytical method qualified for the assessment of RDX and degradation products. The technique offers unique selectivity possessed by the photochemical reactor coupled to EC detection serving to eliminate the need for repetitive analysis using different column technologies. Furthermore, on-line sample pretreatment is developed and optimized specifically for the preparation of samples consisting of RDX and degradation products. Analytical figures of merit determined for all target analytes using on-line SPE-HPLC-UV-PAED revealed detection limits in the sub part per billion range for RDX and degradation product MEDINA. The effectiveness of the method is exemplified in collaborative studies with the USGS in monitoring the degradation of RDX and formation of degradation products once the nitro explosive is subject to anaerobic microorganisms WBC-2.

  6. Isolation and characterization of Fenitrothion-degrading bacteria from pestachio gardens in Kerman Provinance

    OpenAIRE

    Mehrnosh Ghafari; Mehdi Hassanshahian; Mohammad Mahani

    2014-01-01

      Introduction : Pesticides with complex structure have high persistence in ecosystem and biosphere. Pesticides have harmful effects on farmlands, human and natural resources.   Materials and methods: In this study for isolation of pesticide-degrading bacteria (Fenitrothion) soil samples were collected from pistachio gardens in Kerman province. Collected soil samples were enriched in Bushnell Hass medium with this pesticide as only carbon and energy source. Isolated bacteria were identified b...

  7. Identification of Wastewater Bacteria Involved in the Degradation of Triclocarban and its Non-Chlorinated Congener

    OpenAIRE

    Miller, Todd R.; Colquhoun, David R.; Halden, Rolf U.

    2010-01-01

    Triclocarban (TCC) is an antimicrobial additive of personal care products that is only partially degraded during wastewater treatment. Bacteria responsible for its transformation are unknown. We obtained wastewater bacteria capable of using as the sole carbon source TCC or its non-chlorinated analog, carbanilide (NCC). Enrichments established using activated sludge amended with TCC and NCC, respectively, were maintained for one year through successive transfers. Enrichments displayed exponent...

  8. Aromatic compound degradation by iron reducing bacteria isolated from irrigated tropical paddy soils

    Institute of Scientific and Technical Information of China (English)

    LU Wenjing; WANG Hongtao; HUANG Changyong; W. Reichardt

    2008-01-01

    Forty-six candidate phenol/benzoate degrading-iron reducing bacteria were isolated from long term irrigated tropical paddy soils by enrichment procedures. Pure cultures and some prepared mixed cultures were examined for ferric oxide reduction and phenol/benzoate degradation. All the isolates were iron reducers, but only 56.5% could couple iron reduction to phenol and/or benzoate degradation, as evidenced by depletion of phenol and benzoate after one week incubation. Analysis of degradative capability using Biolog MT plates revealed that most of them could degrade other aromatic compounds such as ferulic acid, vanillic acid, and hydroxybenzoate. Mixed-cultures and soft samples displayed greater capacity for aromatic degradation and iron reduction than pure bacterial isolates, suggesting that these reactions may be coupled via a consortia-based mechanism in paddy soils.

  9. Biotransformation of nitrobenzene by bacteria containing toluene degradative pathways

    Energy Technology Data Exchange (ETDEWEB)

    Haigler, B.E.; Spain, J.C. (Air Force Civil Engineering Support Agency, Tyndall AFB, FL (United States))

    1991-11-01

    Nonpolar nitroaromatic compounds have been considered resistant to attack by oxygenases because of the electron withdrawing properties of the nitro group. The authors have investigate the ability of seven bacterial strains containing toluene degradative pathways to oxidize nitrobenzene. Cultures were induced with toluene vapor prior to incubation with nitrobenzene, and products were identified by high-performance liquid chromatography and gas chromatography-mass spectrometry. Pseudomonas cepacia G4 and a strain of Pseudomonas harboring the TOL plasmid (pTN2) did not transform nitrobenzene. Cells of Pseudomonas putida F1 and Pseudomonas sp. strain JS150 converted nitrobenzene to 3-nitrocatechol. Transformation of nitrobenzene in the presence of {sup 18}O{sub 2} indicated that the reaction in JS150 involved the incorporation of both atoms of oxygen in the 3-nitrocatechol, which suggests a dioxygenase mechanism. P. putida 39/D, a mutant strain of P. putida F1, converted nitrobenzene to a compound tentatively identified as cis-1, 2-dihydroxy-3-nitrocyclohexa-3, 5-diene. This compound was rapidly converted to 3-nitrocatechol by cells of strain JS150. Cultures of Pseudomonas mendocina KR-1 converted nitrobenzene to a mixture of 3- and 4-nitrophenol (10 and 63%, respectively). Pseudomonas pickettii PKO1 converted nitrobenzene to 3- and 4-nitrocatechol via 3- and 4-nitrophenol. The nitrocatechols were slowly degraded to unidentified metabolites. Nitrobenzene did not serve as an inducer for the enzymes that catalyzed its oxidation.

  10. POTENCY OF LIGNOCELLULOSE DEGRADING BACTERIA ISOLATED FROM BUFFALO AND HORSE GASTROINTESTINAL TRACT AND ELEPHANT DUNG FOR FEED FIBER DEGRADATION

    Directory of Open Access Journals (Sweden)

    A. Wahyudi

    2014-10-01

    Full Text Available Lignin is limiting factor for cellulose and hemicellulose degradation in rumen. Isolation andselection bacteria from buffalo and horse gastrointestinal tract and elephant dung could be foundbacteria that have superiority to degrade lignin, xylan, and cellulose. Those animals were chosenbecause they were herbivores that consume low quality crude fiber as their main energy sources.Lignocellulose degrading bacteria were isolated by Hungate selective media, by using lignin (tannicacid, xylan, and cellulose as selective substrates. The morphological identification used an enrichmentmedia by measuring color, colony size, diffusion zone, clear zone, and biochemical identification usingproduction of ligninase, xylanase, and cellulase enzymes. The best lignocellulose degrading bacteriathen was determined by the morphological and biochemical character. This study showed thatlignocellulose degrading bacteria could be found in gastrointestinal tract of buffalo and horse, andelephant dung. Highest number colony was found in samples from buffalo's colon (376, followed byhorse's cecum (203, elephant’s dung (46, buffalo’s cecum (23, buffalo's rumen (9 and horse’s colon(7. The highest isolates activity of lignolytic, xylanolytic, and cellulolytic were reached by buffalo’scecum (7.64, horse's cecum (6.27, and buffalo’s colon (2.48. Meanwhile the highest enzymesproductivities were: buffalo’s cecum (0.0400 µmol, horse’s cecum (1.3912 µmol and buffalo’s colon(0.1971 µmol. Based on morphologycal character and biochemical test, it could be concluded thatlignolytic from buffalo’s cecum, xylanolytic from horse’s cecum, and cellulolytic from buffalo’s colonwere the superior isolates and they were 99% analyzed as Enterococcus casseliflavus/gallinarumspecies.

  11. Comparison of factors influencing trichloroethylene degradation by toluene-oxidizing bacteria.

    OpenAIRE

    Leahy, J G; Byrne, A M; Olsen, R H

    1996-01-01

    The degradation of trichloroethylene (TCE) by toluene-oxidizing bacteria has been extensively studied, and yet the influence of environmental conditions and physiological characteristics of individual strains has received little attention. To consider these effects, the levels of TCE degradation by strains distinguishable on the basis of toluene and nitrate metabolism were compared under aerobic or hypoxic conditions in the presence and absence of nitrate and an exogenous electron donor, lact...

  12. Phytate Degradation by Fungi and Bacteria that Inhabit Sawdust and Coffee Residue Composts

    OpenAIRE

    Eida, Mohamed Fathallh; Nagaoka, Toshinori; Wasaki, Jun; Kouno, Kenji

    2012-01-01

    Phytate is the primary source of organic phosphorus, but it cannot be directly utilized by plants and is strongly adsorbed by the soil, reducing bioavailability. Composting is a process used to improve the bioavailability of phytate in organic wastes through degradation by microorganisms. In this study, we aimed to investigate the phytate-degrading ability of fungi and bacteria that inhabit sawdust compost and coffee residue compost, and their contribution to the composting process. In the pl...

  13. Catabolism and biotechnological applications of cholesterol degrading bacteria.

    Science.gov (United States)

    García, J L; Uhía, I; Galán, B

    2012-11-01

    Cholesterol is a steroid commonly found in nature with a great relevance in biology, medicine and chemistry, playing an essential role as a structural component of animal cell membranes. The ubiquity of cholesterol in the environment has made it a reference biomarker for environmental pollution analysis and a common carbon source for different microorganisms, some of them being important pathogens such as Mycobacterium tuberculosis. This work revises the accumulated biochemical and genetic knowledge on the bacterial pathways that degrade or transform this molecule, given that the characterization of cholesterol metabolism would contribute not only to understand its role in tuberculosis but also to develop new biotechnological processes that use this and other related molecules as starting or target materials.

  14. Abundance and activity of oil-degrading and indigenous bacteria in sediment microcosms

    International Nuclear Information System (INIS)

    The responses of bacterial community composition and degradation crude oil to applications of bioremediation products and plant detrital material were investigated in wetlands microcosms. The microcosms were constructed of sieved sediments and operated as tidal marshes. Products included nutrients, organisms, surfactants and combinations thereof; dried ground Spartina was the source of detrital material. Plate count and most probable-number techniques were used to enumerate microbial populations and GC/MS analysis of indicator petroleum hydrocarbons was used to assess oil degradation. Microbial communities were characterized by whole-genome hybridization and specific probes for bacterial groups, including Pseudomonas, Streptomycetes, Vibrio, and sulfate-reducing bacteria. Although the total microbial numbers were similar in all bioremediation treatments, the numbers of oil degraders increased two to three log units in the fertilizer and microbial-degrader-enriched treatments. Oil-degraders comprised the largest fraction of the total population in the treatment amended with microbial degraders, apparently at the expense of indigenous bacteria, as indicated by specific probes. Oil-degraders were also detected in the subsurface in all treatments except the controls. The extent of oil degradation was not consistent with bacterial numbers; only nutrient additions resulted in significantly enhanced degradation of oil. After 1 month of microcosm operation, oil-degraders had increased at least two orders of magnitude in sediment surface layers when oil was added alone or with Spartina detritus, although total bacterial numbers and the number of oil-degraders decreased to near initial levels by 2 months. The peak coincides with bacterial utilization of the alkane fraction of petroleum hydrocarbons

  15. Infrared Cross-Sections of Nitro-Derivative Vapors: New Spectroscopic Signatures of Explosive Taggants and Degradation Products

    Science.gov (United States)

    Cuisset, Arnaud; Mouret, Gaël; Pirali, Olivier; Gruet, Sébastien; Piau, Gérard Pascal; Fournier, Gilles

    2015-06-01

    Classical explosives such as RDX or TNT exhibit a very low vapor pressure at room temperature and their detection in air requires very sensitive techniques with levels usually better than 1 ppb. To overcome this difficulty, it is not the explosive itself which is detected, but another compound more volatile present in the explosive. This volatile compound can exist naturally in the explosive due to the manufacturing process. For example, in the case of DiNitroToluene (DNT), the molecule is a degradation product of TNT and is required for its manufacture. Ortho-Mononitrotoluene (2-NT) and para-mononitrotoluene (4-NT) can be also used as detection taggants for explosive detection. In this study, using the exceptional properties of the SOLEIL synchrotron source, and adapted multipass-cells, gas phase Far-IR rovibrational spectra of different isomers of mononitrotoluene and dinitrotoluene have been investigated. Room temperature Far-IR cross-sections of the 3 isomer forms of mononitrotoluene have been determined for the lowest frequency vibrational bands located below 700 wn. Cross sections and their temperature dependences have been also measured in the Mid-IR using conventional FTIR spectroscopy probing the nitro-derivatives vapors in a heated multipass-cell. J. C. Oxley, J. L. Smith, W. Luo, J. Brady, Prop. Explos. Pyrotec. 34 (2009) 539-543 A. Cuisset, S. Gruet, O. Pirali, G. Mouret, Spectrochimica Acta Part A, 132 (2014) 838-845.

  16. 2,4-Dichlorophenoxyacetic acid-degrading bacteria contain mosaics of catabolic genes.

    OpenAIRE

    Fulthorpe, R R; McGowan, C; Maltseva, O V; Holben, W E; Tiedje, J M

    1995-01-01

    DNA from 32 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria from diverse locations was probed with the first three genes of the well-known 2,4-D degradation pathway found in Alcaligenes eutrophus JMP134(pJP4). The majority of strains did not show high levels of homology to the first three genes of the 2,4-D degradation pathway, tfdA, -B, and -C. Most strains showed combinations of tfdA-, B-, and C-like elements that exhibited various degrees of homology to the gene probes. Strains h...

  17. Hydrolytic bacteria in mesophilic and thermophilic degradation of plant biomass

    Energy Technology Data Exchange (ETDEWEB)

    Zverlov, Vladimir V.; Hiegl, Wolfgang; Koeck, Daniela E.; Koellmeier, Tanja; Schwarz, Wolfgang H. [Department of Microbiology, Technische Universitaet Muenchen, Freising-Weihenstephan (Germany); Kellermann, Josef [Max Planck Institute for Biochemistry, Am Klopferspitz, Martinsried (Germany)

    2010-12-15

    Adding plant biomass to a biogas reactor, hydrolysis is the first reaction step in the chain of biological events towards methane production. Maize silage was used to enrich efficient hydrolytic bacterial consortia from natural environments under conditions imitating those in a biogas plant. At 55-60 C a more efficient hydrolyzing culture could be isolated than at 37 C. The composition of the optimal thermophilic bacterial consortium was revealed by sequencing clones from a 16S rRNA gene library. A modified PCR-RFLP pre-screening method was used to group the clones. Pure anaerobic cultures were isolated. 70% of the isolates were related to Clostridium thermocellum. A new culture-independent method for identification of cellulolytic enzymes was developed using the isolation of cellulose-binding proteins. MALDI-TOF/TOF analysis and end-sequencing of peptides from prominent protein bands revealed cellulases from the cellulosome of C. thermocellum and from a major cellulase of Clostridium stercorarium. A combined culture of C. thermocellum and C. stercorarium was shown to excellently degrade maize silage. A spore preparation method suitable for inoculation of maize silage and optimal hydrolysis was developed for the thermophilic bacterial consortium. This method allows for concentration and long-term storage of the mixed culture for instance for inoculation of biogas fermenters. (Copyright copyright 2010 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  18. SIP metagenomics identifies uncultivated Methylophilaceae as dimethylsulphide degrading bacteria in soil and lake sediment.

    Science.gov (United States)

    Eyice, Özge; Namura, Motonobu; Chen, Yin; Mead, Andrew; Samavedam, Siva; Schäfer, Hendrik

    2015-11-01

    Dimethylsulphide (DMS) has an important role in the global sulphur cycle and atmospheric chemistry. Microorganisms using DMS as sole carbon, sulphur or energy source, contribute to the cycling of DMS in a wide variety of ecosystems. The diversity of microbial populations degrading DMS in terrestrial environments is poorly understood. Based on cultivation studies, a wide range of bacteria isolated from terrestrial ecosystems were shown to be able to degrade DMS, yet it remains unknown whether any of these have important roles in situ. In this study, we identified bacteria using DMS as a carbon and energy source in terrestrial environments, an agricultural soil and a lake sediment, by DNA stable isotope probing (SIP). Microbial communities involved in DMS degradation were analysed by denaturing gradient gel electrophoresis, high-throughput sequencing of SIP gradient fractions and metagenomic sequencing of phi29-amplified community DNA. Labelling patterns of time course SIP experiments identified members of the Methylophilaceae family, not previously implicated in DMS degradation, as dominant DMS-degrading populations in soil and lake sediment. Thiobacillus spp. were also detected in (13)C-DNA from SIP incubations. Metagenomic sequencing also suggested involvement of Methylophilaceae in DMS degradation and further indicated shifts in the functional profile of the DMS-assimilating communities in line with methylotrophy and oxidation of inorganic sulphur compounds. Overall, these data suggest that unlike in the marine environment where gammaproteobacterial populations were identified by SIP as DMS degraders, betaproteobacterial Methylophilaceae may have a key role in DMS cycling in terrestrial environments.

  19. SIP metagenomics identifies uncultivated Methylophilaceae as dimethylsulphide degrading bacteria in soil and lake sediment.

    Science.gov (United States)

    Eyice, Özge; Namura, Motonobu; Chen, Yin; Mead, Andrew; Samavedam, Siva; Schäfer, Hendrik

    2015-11-01

    Dimethylsulphide (DMS) has an important role in the global sulphur cycle and atmospheric chemistry. Microorganisms using DMS as sole carbon, sulphur or energy source, contribute to the cycling of DMS in a wide variety of ecosystems. The diversity of microbial populations degrading DMS in terrestrial environments is poorly understood. Based on cultivation studies, a wide range of bacteria isolated from terrestrial ecosystems were shown to be able to degrade DMS, yet it remains unknown whether any of these have important roles in situ. In this study, we identified bacteria using DMS as a carbon and energy source in terrestrial environments, an agricultural soil and a lake sediment, by DNA stable isotope probing (SIP). Microbial communities involved in DMS degradation were analysed by denaturing gradient gel electrophoresis, high-throughput sequencing of SIP gradient fractions and metagenomic sequencing of phi29-amplified community DNA. Labelling patterns of time course SIP experiments identified members of the Methylophilaceae family, not previously implicated in DMS degradation, as dominant DMS-degrading populations in soil and lake sediment. Thiobacillus spp. were also detected in (13)C-DNA from SIP incubations. Metagenomic sequencing also suggested involvement of Methylophilaceae in DMS degradation and further indicated shifts in the functional profile of the DMS-assimilating communities in line with methylotrophy and oxidation of inorganic sulphur compounds. Overall, these data suggest that unlike in the marine environment where gammaproteobacterial populations were identified by SIP as DMS degraders, betaproteobacterial Methylophilaceae may have a key role in DMS cycling in terrestrial environments. PMID:25822481

  20. Capacity of Aromatic Compound Degradation by Bacteria from Amazon Dark Earth

    Directory of Open Access Journals (Sweden)

    Fernanda Mancini Nakamura

    2014-06-01

    Full Text Available Amazon dark earth (ADE is known for its high organic matter content, biochar concentration and microbial diversity. The biochar amount suggests the existence of microorganisms capable of degrading aromatic hydrocarbons (AHs. In an effort to investigate the influence of bacteria on the resilience and fertility of these soils, we enriched five ADE soils with naphthalene and phenanthrene, and biodegradation assays with phenanthrene and diesel oil were carried out, as well. After DNA extraction, amplification and sequencing of the 16S rRNA bacterial gene, we identified 148 isolates as the Proteobacteria, Firmicutes and Actinobacteria phyla comprising genera closely related to AHs biodegradation. We obtained 128 isolates that degrade diesel oil and 115 isolates that degrade phenanthrene. Some isolates were successful in degrading both substrates within 2 h. In conclusion, the obtained isolates from ADE have degrading aromatic compound activity, and perhaps, the biochar content has a high influence on this.

  1. Degradation behaviors of nonylphenol ethoxylates by isolated bacteria using improved isolation method

    Institute of Scientific and Technical Information of China (English)

    GU Xin; ZHANG Yu; ZHANG Jing; YANG Min; Hideyuki Tamaki; Yoichi Kamagata

    2008-01-01

    Nonylphenol ethoxylate (NPEO)-degrading bacteria were isolated from activated sludge using an improved isolation method, and the corresponding degradation behaviours were investigated. Eight NPEO-degrading strains distributed in genera Pseudomonas, Sphingomonas, Sphingobium, Cupriavidus, Ralstonia, Achromobacter, and Staphylococcus were acquired. The latter five genera have never been reported for the degradation of NPEOs. Four degradation patterns were observed for the eight pure strains. In pattern A, NPEOs were converted to short-chain NPEOs and carboxylated products, while in pattern B, lower ethoxylated oligomers appeared. Nonylphenol monoethoxylate was the main product in pattern C, while in pattern D ethoxylated units was oxidized but not shortened. Pattern C and D have not yet been reported.

  2. Petroleum Hydrocarbon Degradation Potential of Soil Bacteria Native to the Yellow River Delta

    Institute of Scientific and Technical Information of China (English)

    WANG Zhen-Yu; GAO Dong-Mei; LI Feng-Min; ZHAO Jian; XIN Yuan-Zheng; S.SIMKINS; XING Bao-Shan

    2008-01-01

    The bioremediation potential of bacteria indigenous to soils of the Yellow River Delta in China was evaluated as a treatment option for soil remediation. Petroleum hydrocarbon degraders were isolated from contaminated soil samples from the Yellow River Delta. Four microbial communities and eight isolates were obtained. The optimal temperature, salinity, pH, and the ratios of C, N, and P (C:N:P) for the maximum biodegradation of diesel oil, crude oil, n-alkanes, and polyaromatic hydrocarbons by ndigenous bacteria were determined, and the kinetics changes in microbial communities were monitored. In general, the mixed microbial consortia demonstrated wider catabolic versatility and faster overall rate of hydrocarbon degradation than individual isolates. Our experimental results demonstrated the feasibility of biodegradation of petroleum hydrocarbon by indigenous bacteria for oil remediation in the Yellow River Delta.

  3. Marine oil degrading bacteria related to oil inputs and surface currents in the western Caribbean Sea

    Energy Technology Data Exchange (ETDEWEB)

    Lizarraga-Partida, M.L.; Vicuna, F.B.I.; Chang, I.W. (Centro de Investigacion Cientifica y de Educacion Superior de Ensenada (CICESE), Ensenada (Mexico))

    1990-01-01

    The distribution of oil degrading bacteria (ODB) and its ratios to viable heterotrophic bacteria (CFU) and direct counts (AODC) were examined in relation to the surface currents of the western Caribbean Sea. High ODB/CFU and ODB/AODC ratios were found, suggesting that chronic sources of hydrocarbons in the region may have a larger impact than those in the southern Gulf of Mexico, where previous studies have been performed. It was concluded that, in western Caribbean waters, the distribution of oil degrading bacteria, or its ratios to CFU or AODC, could be useful indicators of chronic oil inputs originating at the east of the Caribbean Sea, as well as their motions afterwards. (author).

  4. Halotolerance and effect of salt on hydrophobicity in hydrocarbon-degrading bacteria.

    Science.gov (United States)

    Longang, Adégilns; Buck, Chris; Kirkwood, Kathlyn M

    2016-01-01

    Hydrocarbon-contaminated environments often also experience co-contamination with elevated levels of salt. This paper investigates the occurrence of halotolerance among several hydrocarbon-degrading bacteria, as an initial assessment of the importance of salt contamination to bioremediation strategies. Halotolerance was common, but not ubiquitous, among the 12 hydrocarbon-degrading bacteria tested, with many strains growing at up to 75 or 100 g NaCl L(-1) in rich medium. Greater sensitivity to elevated salt concentrations was observed among aromatics degraders compared to saturates degraders, and in defined medium compared to rich medium. Observed effects of high salt concentrations included increased lag times and decreased maximum growth. Many strains exhibited flocculation at elevated salt concentrations, but this did not correlate to any patterns in cell surface hydrophobicity, measured using the Bacterial Adhesion to Hydrocarbon assay. The occurrence of halotolerance in hydrocarbon-degrading bacteria suggests the potential for native microorganisms to contribute to the bioremediation of oil and salt co-contaminated sites, and indicates the need for a better understanding of the relationship between halotolerance and hydrocarbon biodegradation capabilities. PMID:26915518

  5. Isolation and characterization of diesel degrading bacteria, Sphingomonas sp. and Acinetobacter junii from petroleum contaminated soil

    Science.gov (United States)

    Zhang, Qiuzhuo; Wang, Duanchao; Li, Mengmeng; Xiang, Wei-Ning; Achal, Varenyam

    2014-03-01

    Two indigenous bacteria of petroleum contaminated soil were characterized to utilize diesel fuel as the sole carbon and energy sources in this work. 16S rRNA gene sequence analysis identified these bacteria as Sphingomonas sp. and Acinetobacter junii. The ability to degrade diesel fuel has been demonstrated for the first time by these isolates. The results of IR analyses showed that Sphingomonas sp. VA1 and A. junii VA2 degraded up to 82.6% and 75.8% of applied diesel over 15 days, respectively. In addition, Sphingomonas sp. VA1 possessed the higher cellular hydrophobicities of 94% for diesel compared to 81% by A. junii VA2. The isolates Sphingomonas sp. VA1 and A. junii VA2 exhibited 24% and 18%, respectively emulsification activity. This study reports two new diesel degrading bacterial species, which can be effectively used for bioremediation of petroleum contaminated sites.

  6. Preliminary study on PAH degradation by bacteria from contaminated sediments in Xiamen Western Sea, Fujian, China

    Institute of Scientific and Technical Information of China (English)

    MASKAOUI Khalid; ZHENG Tianling; HONG Huasheng; YU Zhiming; YUAN Jianjun; HU Zhong

    2004-01-01

    In order to estimate the biodegradation of three polycyclic aromatic hydrocarbons (PAHs) compounds, bacterial strains were isolated from marine sediments in three heavily contaminated sites (Yuandang Lake, Dongdu Port and Aquacultural zones in Maluan Bay) in Xiamen Western Sea. The results show three bacterial strains, which used pyrene as the sole carbon source, were identified as strains of Aureobacterium sp., Arthrobacter sp., Rhodococcus sp. The PAH-degrading bacteria isolated had a strong ability to degrade phenanhrene, fluoranthene and pyrene at different degradation rates. The highest degradation rate was observed when three PAH compounds were mixed with an individual strain in the medium. The three PAHs were degraded after one week with a degradation rate of 89.94 % for phenanthrene and 93.4 % for both of fluoranthene and pyrene. In addition, after 25 days of incubation, the degradation rate was 99.98 % for phenanthrene and 99.97 % for both of fluoranthene and pyrene. Optical density was measured to estimate bacterial growth during the degradation of PAHs. Highest levels of bacterial growth were observed with a three PAH mixture in the culture, suggesting that the concentration of PAHs influenced bacterial growth and the highest levels of degradation for most series were detected after one week of incubation.

  7. DETECTION OF PHENOL DEGRADING BACTERIA AND PSEUDOMONAS PUTIDA IN ACTIVATED SLUDGE BY POLYMERASE CHAIN REACTION

    Directory of Open Access Journals (Sweden)

    H. Movahedyan ، H. Khorsandi ، R. Salehi ، M. Nikaeen

    2009-04-01

    Full Text Available Phenol is one of the organic pollutants in various industrial wastewaters especially petrochemical and oil refining. Biological treatment is one of the considerable choices for removing of phenol present in these wastewaters. Identification of effective microbial species is considered as one of the important priorities for production of the biomass in order to achieve desirable kinetic of biological reactions. Basic purpose of this research is identification of phenol-degrading Pseudomonas Putida in activated sludge by polymerase chain reaction (PCR that has high speed and specificity. In this research, 10 various colonies of phenol-degrading bacteria were isolated from municipal activated sludge and the rate of phenol removal and growth rate of these bacteria were assessed in different concentrations of phenol (200 – 900 mg/L. Confirmation of the largest subunit of multicomponent phenol hydroxylase (LmPH gene and gene coding the N fragment in Pseudomonas Putida-derived methyl phenol operon (DmpN gene through PCR were used for general identification of phenol-degrading bacteria and Pseudomonas Putida, respectively. Presence of a 600 bp (base pairs bond in all of isolated strains indicated that they contain phenol hydroxylase gene. 6 of 10 isolated bacteria were Pseudomonas Putida because they produced a 199 bp PCR product by DmpN primers. According to PCR results in this study, the best phenol-degrading bacteria that can utilize 500 – 600 mg/L phenol completely after 48 hours incubation, belong to Pseudomonas Putida strains. It is clear that use of isolated bacteria can lead to considerable decrease of treatment time as well as promotion of phenol removal rate.

  8. Novel diesel-oil-degrading bacteria and fungi from the Ecuadorian Amazon rainforest.

    Science.gov (United States)

    Maddela, N R; Masabanda, M; Leiva-Mora, M

    2015-01-01

    Isolating new diesel-oil-degrading microorganisms from crude-oil contaminated sites and evaluating their degradation capacities are vitally important in the remediation of oil-polluted environments and crude-oil exploitation. In this research, new hydrocarbon-degrading bacteria and fungi were isolated from the crude-oil contaminated soil of the oil-fields in the Amazon rainforest of north-east Ecuador by using a soil enrichment technique. Degradation analysis was tracked by gas chromatography and a flame ionization detector. Under laboratory conditions, maximum degradability of the total n-alkanes reached up to 77.34 and 62.62 removal ratios after 30 days of incubation for the evaporated diesel oil by fungi (isolate-1) and bacteria (isolate-1), respectively. The 16S/18S rDNA sequence analysis indicated that the microorganisms were most closely (99-100%) related to Bacillus cereus (isolate-1), Bacillus thuringiensis (isolate-2), Geomyces pannorum (isolate-1), and Geomyces sp. (isolate-2). Therefore, these strains enable the degradation of hydrocarbons as the sole carbon source, and these findings will benefit these strains in the remediation of oil-polluted environments and oil exploitation.

  9. Bacteria and fungi can contribute to nutrients bioavailability and aggregate formation in degraded soils.

    Science.gov (United States)

    Rashid, Muhammad Imtiaz; Mujawar, Liyakat Hamid; Shahzad, Tanvir; Almeelbi, Talal; Ismail, Iqbal M I; Oves, Mohammad

    2016-02-01

    Intensive agricultural practices and cultivation of exhaustive crops has deteriorated soil fertility and its quality in agroecosystems. According to an estimate, such practices will convert 30% of the total world cultivated soil into degraded land by 2020. Soil structure and fertility loss are one of the main causes of soil degradation. They are also considered as a major threat to crop production and food security for future generations. Implementing safe and environmental friendly technology would be viable solution for achieving sustainable restoration of degraded soils. Bacterial and fungal inocula have a potential to reinstate the fertility of degraded land through various processes. These microorganisms increase the nutrient bioavailability through nitrogen fixation and mobilization of key nutrients (phosphorus, potassium and iron) to the crop plants while remediate soil structure by improving its aggregation and stability. Success rate of such inocula under field conditions depends on their antagonistic or synergistic interaction with indigenous microbes or their inoculation with organic fertilizers. Co-inoculation of bacteria and fungi with or without organic fertilizer are more beneficial for reinstating the soil fertility and organic matter content than single inoculum. Such factors are of great importance when considering bacteria and fungi inocula for restoration of degraded soils. The overview of presented mechanisms and interactions will help agriculturists in planning sustainable management strategy for reinstating the fertility of degraded soil and assist them in reducing the negative impact of artificial fertilizers on our environment.

  10. Community Analysis and Recovery of Phenol-degrading Bacteria from Drinking Water Biofilters.

    Science.gov (United States)

    Gu, Qihui; Wu, Qingping; Zhang, Jumei; Guo, Weipeng; Wu, Huiqing; Sun, Ming

    2016-01-01

    Phenol is a ubiquitous organic contaminant in drinking water. Biodegradation plays an important role in the elimination of phenol pollution in the environment, but the information about phenol removal by drinking water biofilters is still lacking. Herein, we study an acclimated bacterial community that can degrade over 80% of 300 mg/L phenol within 3 days. PCR detection of genotypes involved in bacterial phenol degradation revealed that the degradation pathways contained the initial oxidative attack by phenol hydroxylase, and subsequent ring fission by catechol 1,2-dioxygenase. Based on the PCR denatured gradient gel electrophoresis (PCR-DGGE) profiles of bacteria from biological activated carbon (BAC), the predominant bacteria in drinking water biofilters including Delftia sp., Achromobacter sp., and Agrobacterium sp., which together comprised up to 50% of the total microorganisms. In addition, a shift in bacterial community structure was observed during phenol biodegradation. Furthermore, the most effective phenol-degrading strain DW-1 that correspond to the main band in denaturing gradient gel electrophoresis (DGGE) profile was isolated and identified as Acinetobacter sp., according to phylogenetic analyses of the 16S ribosomal ribonucleic acid (rRNA) gene sequences. The strain DW-1 also produced the most important enzyme, phenol hydroxylase, and it also exhibited a good ability to degrade phenol when immobilized on granular active carbon (GAC). This study indicates that the enrichment culture has great potential application for treatment of phenol-polluted drinking water sources, and the indigenous phenol-degrading microorganism could recover from drinking water biofilters as an efficient resource for phenol removal. Therefore, the aim of this study is to draw attention to recover native phenol-degrading bacteria from drinking water biofilters, and use these native microorganisms as phenolic water remediation in drinking water sources.

  11. Community analysis and recovery of phenol-degrading bacteria from drinking water biofilters

    Directory of Open Access Journals (Sweden)

    Qihui eGu

    2016-04-01

    Full Text Available Phenol is a ubiquitous organic contaminant in drinking water. Biodegradation plays an important role in the elimination of phenol pollution in the environment, but the information about phenol removal by drinking water biofilters is still lacking. Herein, we study an acclimated bacterial community that can degrade over 80% of 300 mg/L phenol within 3 d. PCR detection of genotypes involved in bacterial phenol degradation revealed that the degradation pathways contained the initial oxidative attack by phenol hydroxylase, and subsequent ring fission by catechol 1,2-dioxygenase. Based on the PCR denatured gradient gel electrophoresis (PCR-DGGE profiles of bacteria from biological activated carbon (BAC, the predominant bacteria in drinking water biofilters including Delftia sp., Achromobacter sp., and Agrobacterium sp., which together comprised up to 50% of the total microorganisms. In addition, a shift in bacterial community structure was observed during phenol biodegradation. Furthermore, the most effective phenol-degrading strain DW-1 that correspond to the main band in DGGE profile was isolated and identified as Acinetobacter sp., according to phylogenetic analyses of the 16S ribosomal ribonucleic acid (rRNA gene sequences. The strain DW-1 also produced the most important enzyme, phenol hydroxylase, and it also exhibited a good ability to degrade phenol when immobilized on GAC. This study indicates that the enrichment culture has great potential application for treatment of phenol-polluted drinking water sources, and the indigenous phenol-degrading microorganism could recover from drinking water biofilters as an efficient resource for phenol removal. Therefore, the aim of this study is to draw attention to recover native phenol-degrading bacteria from drinking water biofilters, and use these native microorganisms as phenolic water remediation in drinking water sources.

  12. Community Analysis and Recovery of Phenol-degrading Bacteria from Drinking Water Biofilters.

    Science.gov (United States)

    Gu, Qihui; Wu, Qingping; Zhang, Jumei; Guo, Weipeng; Wu, Huiqing; Sun, Ming

    2016-01-01

    Phenol is a ubiquitous organic contaminant in drinking water. Biodegradation plays an important role in the elimination of phenol pollution in the environment, but the information about phenol removal by drinking water biofilters is still lacking. Herein, we study an acclimated bacterial community that can degrade over 80% of 300 mg/L phenol within 3 days. PCR detection of genotypes involved in bacterial phenol degradation revealed that the degradation pathways contained the initial oxidative attack by phenol hydroxylase, and subsequent ring fission by catechol 1,2-dioxygenase. Based on the PCR denatured gradient gel electrophoresis (PCR-DGGE) profiles of bacteria from biological activated carbon (BAC), the predominant bacteria in drinking water biofilters including Delftia sp., Achromobacter sp., and Agrobacterium sp., which together comprised up to 50% of the total microorganisms. In addition, a shift in bacterial community structure was observed during phenol biodegradation. Furthermore, the most effective phenol-degrading strain DW-1 that correspond to the main band in denaturing gradient gel electrophoresis (DGGE) profile was isolated and identified as Acinetobacter sp., according to phylogenetic analyses of the 16S ribosomal ribonucleic acid (rRNA) gene sequences. The strain DW-1 also produced the most important enzyme, phenol hydroxylase, and it also exhibited a good ability to degrade phenol when immobilized on granular active carbon (GAC). This study indicates that the enrichment culture has great potential application for treatment of phenol-polluted drinking water sources, and the indigenous phenol-degrading microorganism could recover from drinking water biofilters as an efficient resource for phenol removal. Therefore, the aim of this study is to draw attention to recover native phenol-degrading bacteria from drinking water biofilters, and use these native microorganisms as phenolic water remediation in drinking water sources. PMID:27148185

  13. The Cultivable Surface Microbiota of the Brown Alga Ascophyllum nodosum is Enriched in Macroalgal-Polysaccharide-Degrading Bacteria

    OpenAIRE

    Martin, Marjolaine; Barbeyron, Tristan; Martin, Renee; Portetelle, Daniel; Michel, Gurvan; Vandenbol, Micheline

    2015-01-01

    International audience; Bacteria degrading algal polysaccharides are key players in the global carbon cycle and in algal biomass recycling. Yet the water column, which has been studied largely by metagenomic approaches, is poor in such bacteria and their algal-polysaccharide-degrading enzymes. Even more surprisingly, the few published studies on seaweed-associated microbiomes have revealed low abundances of such bacteria and their specific enzymes. However, as macroalgal cell-wall polysacchar...

  14. Reconstructing metabolic pathways of hydrocarbon-degrading bacteria from the Deepwater Horizon oil spill.

    Science.gov (United States)

    Dombrowski, Nina; Donaho, John A; Gutierrez, Tony; Seitz, Kiley W; Teske, Andreas P; Baker, Brett J

    2016-01-01

    The Deepwater Horizon blowout in the Gulf of Mexico in 2010, one of the largest marine oil spills(1), changed bacterial communities in the water column and sediment as they responded to complex hydrocarbon mixtures(2-4). Shifts in community composition have been correlated to the microbial degradation and use of hydrocarbons(2,5,6), but the full genetic potential and taxon-specific metabolisms of bacterial hydrocarbon degraders remain unresolved. Here, we have reconstructed draft genomes of marine bacteria enriched from sea surface and deep plume waters of the spill that assimilate alkane and polycyclic aromatic hydrocarbons during stable-isotope probing experiments, and we identify genes of hydrocarbon degradation pathways. Alkane degradation genes were ubiquitous in the assembled genomes. Marinobacter was enriched with n-hexadecane, and uncultured Alpha- and Gammaproteobacteria populations were enriched in the polycyclic-aromatic-hydrocarbon-degrading communities and contained a broad gene set for degrading phenanthrene and naphthalene. The repertoire of polycyclic aromatic hydrocarbon use varied among different bacterial taxa and the combined capabilities of the microbial community exceeded those of its individual components, indicating that the degradation of complex hydrocarbon mixtures requires the non-redundant capabilities of a complex oil-degrading community. PMID:27572965

  15. [Lignocellulose degrading bacteria and their genes encoding cellulase/hemicellulase in rumen--a review].

    Science.gov (United States)

    Chen, Furong; Zhu, Yaxin; Dong, Xiuzhu; Liu, Lihua; Huang, Li; Dai, Xin

    2010-08-01

    Rumen of ruminant animals is known as a natural reactor involved in highly efficient lignocelluloses degradation. Rumen fibrolytic microbes have attracted an increasing attention for their potential value in biofuel research. Studies on rumen microbes have traditionally entailed the isolation of fibrolytic bacteria and subsequent analysis of fibrolytic enzymes. Developments in genomic and metagenomic approaches have made it possible to isolate directly genes and gene clusters encoding fibrolytic activities from rumen samples, permitting a global analysis of mechanisms of degradation of lignocellulose in rumen. Research in this field shows that lignocellulose degradation in rumen is a complex process involving a number of different microbes and is effected by a huge array of hydrolytic enzymes in a concerted fashion. This review briefly summarizes results from recent studies, especially metagenomic studies, on lignocellulose degradation in rumen.

  16. Multifarious activities of cellulose degrading bacteria from Koala (Phascolarctos cinereus) faeces.

    Science.gov (United States)

    Singh, Surender; Thavamani, Palanisami; Megharaj, Mallavarapu; Naidu, Ravi

    2015-01-01

    Cellulose degrading bacteria from koala faeces were isolated using caboxymethylcellulose-Congo red agar, screened in vitro for different hydrolytic enzyme activities and phylogenetically characterized using molecular tools. Bacillus sp. and Pseudomonas sp. were the most prominent bacteria from koala faeces. The isolates demonstrated good xylanase, amylase, lipase, protease, tannase and lignin peroxidase activities apart from endoglucanase activity. Furthermore many isolates grew in the presence of phenanthrene, indicating their probable application for bioremediation. Potential isolates can be exploited further for industrial enzyme production or in bioremediation of contaminated sites.

  17. Hydrocarbon-Degrading Bacteria Exhibit a Species-Specific Response to Dispersed Oil while Moderating Ecotoxicity.

    Science.gov (United States)

    Overholt, Will A; Marks, Kala P; Romero, Isabel C; Hollander, David J; Snell, Terry W; Kostka, Joel E

    2016-01-01

    The Deepwater Horizon blowout in April 2010 represented the largest accidental marine oil spill and the largest release of chemical dispersants into the environment to date. While dispersant application may provide numerous benefits to oil spill response efforts, the impacts of dispersants and potential synergistic effects with crude oil on individual hydrocarbon-degrading bacteria are poorly understood. In this study, two environmentally relevant species of hydrocarbon-degrading bacteria were utilized to quantify the response to Macondo crude oil and Corexit 9500A-dispersed oil in terms of bacterial growth and oil degradation potential. In addition, specific hydrocarbon compounds were quantified in the dissolved phase of the medium and linked to ecotoxicity using a U.S. Environmental Protection Agency (EPA)-approved rotifer assay. Bacterial treatment significantly and drastically reduced the toxicity associated with dispersed oil (increasing the 50% lethal concentration [LC50] by 215%). The growth and crude oil degradation potential of Acinetobacter were inhibited by Corexit by 34% and 40%, respectively; conversely, Corexit significantly enhanced the growth of Alcanivorax by 10% relative to that in undispersed oil. Furthermore, both bacterial strains were shown to grow with Corexit as the sole carbon and energy source. Hydrocarbon-degrading bacterial species demonstrate a unique response to dispersed oil compared to their response to crude oil, with potentially opposing effects on toxicity. While some species have the potential to enhance the toxicity of crude oil by producing biosurfactants, the same bacteria may reduce the toxicity associated with dispersed oil through degradation or sequestration. PMID:26546426

  18. Enrichment and identification of naphthalene-degrading bacteria from the Persian Gulf.

    Science.gov (United States)

    Hassanshahian, Mehdi; Boroujeni, Negar Amini

    2016-06-15

    Naphthalene is a ubiquitous pollutant of the marine environment, and naphthalene biodegradation has been receiving constant scientific consideration. For cleanup of aromatic contaminated sites, bioremediation methods are considered as economical and safe approaches for the marine environment. The aims of this research are isolation and characterization of naphthalene-degrading bacteria from some marine samples of the Persian Gulf. Fifty four naphthalene-degrading bacteria were isolated from marine samples (sediment and seawater) that are enriched in ONR7a medium with naphthalene as the only carbon source. Some screening tests such as growth at high concentration of naphthalene, bioemulsifier production and surface hydrophobicity were done to select the best and prevalent strains for naphthalene degradation. Determination of the nucleotide sequence of the gene encoding for 16S rRNA shows that these isolated strains belong to these genera: Shewanella, Salegentibacter, Halomonas, Marinobacter, Oceanicola, Idiomarina and Thalassospira. These strains can degrade half of the percentage of naphthalene in 10days of incubation. This research is the first report on isolation of these genera from the Persian Gulf as naphthalene-degrader. PMID:27114087

  19. Genetic and phenotypic diversity of carbofuran-degrading bacteria isolated from agricultural soils.

    Science.gov (United States)

    Shin, Dong-Hyeon; Kim, Dong-Uk; Seong, Chi-Nam; Song, Hong-Gyu; Ka, Jong-Ok

    2012-04-01

    Thirty-seven carbofuran-degrading bacteria were isolated from agricultural soils, and their genetic and phenotypic characteristics were investigated. The isolates were able to utilize carbofuran as a sole source of carbon and energy. Analysis of the 16S rRNA gene sequence indicated that the isolates were related to members of the genera Rhodococcus, Sphingomonas, and Sphingobium, including new types of carbofuran-degrading bacteria, Bosea and Microbacterium. Among the 37 isolates, 15 different chromosomal DNA patterns were obtained by polymerase chain reaction (PCR) amplification of repetitive extragenic palindromic (REP) sequences. Five of the 15 representative isolates were able to degrade carbofuran phenol, fenoxycarb, and carbaryl, in addition to carbofuran. Ten of the 15 representative isolates had 1 to 8 plasmids. Among the 10 plasmid-containing isolates, plasmid-cured strains were obtained from 5 strains. The cured strains could not degrade carbofuran and other pesticides anymore, suggesting that the carbofuran degradative genes were on the plasmid DNAs in these strains. When analyzed with PCR amplification and dot-blot hybridization using the primers targeting for the previously reported carbofuran hydrolase gene (mcd), all of the isolates did not show any positive signals, suggesting that their carbofuran hydrolase genes had no significant sequence homology with the mcd gene.

  20. Oxalate-Degrading Capacities of Gastrointestinal Lactic Acid Bacteria and Urinary Tract Stone Formation

    OpenAIRE

    Mohammad Kargar; Rouhi Afkari; Sadegh Ghorbani-Dalini

    2013-01-01

    Background: Calcium oxalate is one the most significant causes of human kidney stones. Increasing oxalate uptake results in increased urinary oxalate. Elevated urinary oxalate is one the most important causes of kidney stone formation. This study aims to evaluate oxalate-degrading capacity of lactic acid bacteria and its impact on incidence of kidney stone.Materials and Methods: This case-control study was conducted on serum, urinary, and fecal samples. The research population included a tota...

  1. Identification and characterisation of oil sludge degrading bacteria isolated from compost

    Directory of Open Access Journals (Sweden)

    Ubani Onyedikachi

    2016-06-01

    Full Text Available Compounds present in oil sludge such as polycyclic aromatic hydrocarbons (PAHs are known to be cytotoxic, mutagenic and potentially carcinogenic. Microorganisms including bacteria and fungi have been reported to degrade oil sludge components to innocuous compounds such as carbon dioxide, water and salts. In the present study, we isolated different bacteria with PAH-degrading capabilities from compost prepared from oil sludge and animal manures. These bacteria were isolated on a mineral base medium and mineral salt agar plates. A total of 31 morphologically distinct isolates were carefully selected from 5 different compost treatments for identification using polymerase chain reaction (PCR of the 16S rRNA gene with specific primers (universal forward 16S-P1 PCR and reverse 16S-P2 PCR. The amplicons were sequenced and sequences were compared with the known nucleotides from the GenBank. The phylogenetic analyses of the isolates showed that they belong to 3 different clades; Firmicutes, Proteobacteria and Actinobacteria. These bacteria identified were closely related to the genera Bacillus, Arthrobacter, Staphylococcus, Brevibacterium, Variovorax, Paenibacillus, Ralstonia and Geobacillus. The results showed that Bacillus species were predominant in all composts. Based on the results of the degradation of the PAHs in the composts and results of previous studies on bacterial degradation of hydrocarbons in oil, the characteristics of these bacterial isolates suggests that they may be responsible for the breakdown of PAHs of different molecular weights in the composts. Thus, they may be potentially useful for bioremediation of oil sludge during compost bioremediation.

  2. Ecological Dynamics of Toxic Microcystis spp. and Microcystin-Degrading Bacteria in Dianchi Lake, China

    OpenAIRE

    Zhu, Lin; Wu, Yanlong; Song, Lirong; Gan, Nanqin

    2014-01-01

    Toxic cyanobacterial blooms directly threaten both human safety and the ecosystem of surface waters. The widespread occurrence of these organisms, coupled with the tumor-promoting properties of the microcystin toxins that they produce, demands action to mitigate their potential impacts and, thus, a robust understanding of their ecological dynamics. In the present work, the abundance of toxic Microcystis spp. and microcystin (MC)-degrading bacteria in Dianchi Lake, located in Yunnan Province, ...

  3. Diversity of 4-Chloro-2-nitrophenol-Degrading Bacteria in a Waste Water Sample

    Directory of Open Access Journals (Sweden)

    Pankaj Kumar Arora

    2016-01-01

    Full Text Available Eighteen bacterial strains, isolated from a waste water sample collected from a chemically contaminated site, Patancheru (17°32′N 78°16′E/17.53°N 78.27°E, India, were able to decolorize 4-chloro-2-nitrophenol (4C2NP in the presence of an additional carbon source. These eighteen 4C2NP-decolorizing strains have been identified as members of four different genera, including Bacillus, Paenibacillus, Pseudomonas, and Leuconostoc based on the 16S rRNA gene sequencing and phylogenetic analysis. Most of the bacteria (10 belonged to the genus Bacillus and contributed 56% of the total 4C2NP-degrading bacteria, whereas the members of genera Paenibacillus and Pseudomonas represented 22% and 17%, respectively, of total 4C2NP-degrading isolates. There was only one species of Leuconostoc capable of degrading 4C2NP. This is the first report of the diversity of 4C2NP-decolorizing bacteria in a waste water sample. Furthermore, one bacterium, Bacillus aryabhattai strain PC-7, was able to decolorize 4C2NP up to a concentration of 2.0 mM. Gas chromatography-mass spectrometry analysis identified 5-chloro-2-methylbenzoxazole as the final product of 4C2NP decolorization in strain PC-7.

  4. Role of bacteria in the production and degradation of Microcystis cyanopeptides.

    Science.gov (United States)

    Briand, Enora; Humbert, Jean-François; Tambosco, Kevin; Bormans, Myriam; Gerwick, William H

    2016-06-01

    The freshwater cyanobacteria, Microcystis sp., commonly form large colonies with bacteria embedded in their mucilage. Positive and negative interactions between Microcystis species and their associated bacteria have been reported. However, the potential role of bacteria in the production and degradation of cyanobacterial secondary metabolites has not been investigated. In this study, a Microcystis-associated bacterial community was isolated and added to the axenic M. aeruginosaPCC7806 liquid culture. After 3 years of cocultivation, we studied the bacterial genetic diversity adapted to the PCC7806 strain and compared the intra- and extracellular concentration of major cyanopeptides produced by the cyanobacterial strain under xenic and axenic conditions. Mass spectrometric analyses showed that the intracellular concentration of peptides was not affected by the presence of bacteria. Interestingly, the produced peptides were detected in the axenic media but could not be found in the xenic media. This investigation revealed that a natural bacterial community, dominated by Alpha-proteobacteria, was able to degrade a wide panel of structurally varying cyclic cyanopeptides. PMID:26918405

  5. Exploration of hydrocarbon degrading bacteria on soils contaminated by crude oil from South Sumatera

    Directory of Open Access Journals (Sweden)

    A. Napoleon

    2014-07-01

    Full Text Available The goal of this research was to explore hydrocarbon degrading bacteria on crude oil contaminated soil with potential to degrade hydrocarbon in oil pollutant. The research started by early August 2013 till January 2014. Soil sampling for this research was taken on several places with contaminated soil location such as Benakat, Rimau, and Pengabuan all of it located in South Sumatera. Conclusion from this research Isolates obtained from three (3 sites of contaminated soil and treated using SBS medium were Bacillus cereus, Pseudomonas aeruginosa, Klebsiella pnumoniae, Streptococcus beta hemolisa, Proteus mirabilis, Staphylococcus epidermis and Acinotobacter calcoaceticus. Isolates that survived on 300 ppm of hydrocarbon concentration were Bacillus cereus, Pseudomonas aeruginosa and Acinetobacter cakciaceticus Selected isolates posses the ability to degrade hydrocarbon by breaking hydrocarbon substance as the energy source to support isolates existence up to 1,67 TPH level. Based on results accomplish by this research, we urge for further research involving the capacity of isolates to degrade wide variety of hydrocarbon substance and more to develop the potential of these bacteria for bioremediation.

  6. Bacteria-based polythene degradation products: GC-MS analysis and toxicity testing.

    Science.gov (United States)

    Shahnawaz, Mohd; Sangale, Manisha K; Ade, Avinash B

    2016-06-01

    Polythene degradation leads to the production of various by-products depending upon the type of degradation process. The polythene degradation products (PEDP) in the culture supernatant of the two bacteria (Lysinibacillus fusiformis strain VASB14/WL and Bacillus cereus strain VASB1/TS) were analyzed with GC-MS technique. The major by-products in the PEDP in the culture supernatant of L. fusiformis strain VASB14/WL (1,2,3,4 tetra methyl benzene) and B. cereus strain VASB1/TS (1,2,3 trimethyl benzene, 1 ethyl 3,5-dimethyl benzene, 1,4 di methyl 2 ethyl benzene, and dibutyl phthalate) dissolved in diethyl ether were recorded. To assess the environmental applicability of polythene degradation using L. fusiformis strain VASB14/WL and B. cereus strain VASB1/TS at in vitro level. The effect of PEDP produced after 2 months of regular shaking at room temperature on both plants and animal system was studied. No significant decrease in the percent seed germination was recorded with the PEDP of both the bacteria. PEDP produced by L. fusiformis strain VASB14/WL did not report any significant change in germination index (GI) at 10 and 25 %, but least GI (39.66 ± 13.94) was documented at 50 % concentration of PEDP. Highest elongation inhibition rate (53.83 ± 15.71) of Sorghum was also recorded with L. fusiformis and at the same concentration. PMID:26888528

  7. Ammonium-oxidizing bacteria facilitate aerobic degradation of sulfanilic acid in activated sludge.

    Science.gov (United States)

    Chen, Gang; Ginige, Maneesha P; Kaksonen, Anna H; Cheng, Ka Yu

    2014-01-01

    Sulfanilic acid (SA) is a toxic sulfonated aromatic amine commonly found in anaerobically treated azo dye contaminated effluents. Aerobic acclimatization of SA-degrading mixed microbial culture could lead to co-enrichment of ammonium-oxidizing bacteria (AOB) because of the concomitant release of ammonium from SA oxidation. To what extent the co-enriched AOB would affect SA oxidation at various ammonium concentrations was unclear. Here, a series of batch kinetic experiments were conducted to evaluate the effect of AOB on aerobic SA degradation in an acclimatized activated sludge culture capable of oxidizing SA and ammonium simultaneously. To account for the effect of AOB on SA degradation, allylthiourea was used to inhibit AOB activity in the culture. The results indicated that specific SA degradation rate of the mixed culture was negatively correlated with the initial ammonium concentration (0-93 mM, R²= 0.99). The presence of AOB accelerated SA degradation by reducing the inhibitory effect of ammonium (≥ 10 mM). The Haldane substrate inhibition model was used to correlate substrate concentration (SA and ammonium) and oxygen uptake rate. This study revealed, for the first time, that AOB could facilitate SA degradation at high concentration of ammonium (≥ 10 mM) in an enriched activated sludge culture.

  8. Isolation, Identification and Phenotypic Characterization of Microcystin-Degrading Bacteria from Lake Erie

    Science.gov (United States)

    Krishnan, A.; Mou, X. J.

    2015-12-01

    Lake Erie, the smallest and warmest lake among the Laurentian Great Lakes, is known for its problem of eutrophication and frequent occurrence of harmful cyanobacterial blooms (CyanoHABs). One major harmful effect of CyanoHABs is the production of cyanotoxins, especially microcystins. Microcystins (MC) are a group of hepatotoxins and the predominant variant of them is MC-LR. Field measurements and lab experiments indicate that MC degradation in Lake Erie is mainly carried out by indigenous bacteria. However, our knowledge on taxa involved in this process is very limited. This study aimed to fill this knowledge gap using a culture-dependent approach. Water and surface sediment samples were collected from Lake Erie in 2014 and 2015 and enriched with MC-LR. Cells were plated on a number of culturing media. The obtained pure bacterial cultures were screened for MC degrading abilities by MT2 BIO-LOG assays and by growing cells in liquid media containing MC-LR as the sole carbon source. In the latter experiment, MC concentrations were measured using HPLC. Isolates showing positive MC degradation activities in the screening steps were designated MC+ bacteria and characterized based on their phenotypic properties, including colony pigmentation, elevation, opacity, margin, gram nature and motility. The taxonomic identity of MC+ bacteria was determined by 16S rRNA gene full-length DNA sequencing. The presence of mlrA, a gene encoding MC cleavage pathway, was detected by PCR. Our culturing efforts obtained 520 pure cultures; 44 of them were identified as MC+. These MC+ isolates showed diversity in taxonomic identities and differed in their morphology, gram nature, colony characteristics and motility. PCR amplification of mlrA gene yield negative results for all MC+ isolates, indicating that the primers that were used may not be ubiquitous enough to cover the heterogeneity of mlrA genes or, more likely, alternative degradative genes/pathways were employed by Lake Erie bacteria

  9. Isolation and identification of crude oil degrading bacteria from gastropod Haustrum scobina collected from Persian Gulf (Bandar Abbas Shoreline provenance

    Directory of Open Access Journals (Sweden)

    Zinab Bayat

    2016-06-01

    Full Text Available Introduction: Biodegradation is a good alternative rather than chemical and physical methods for cleaning oil contaminated areas. Several factors like crude oil concentration, biosurfactant production, salinity and incubation time affect the biodegradation. Materials and methods: In this study, seawater sample and gastropod were collected from Persian Gulf. To isolate oil degrading bacteria from collected samples, ONR7a medium was used. The strains that had more growth and higher oil removal were selected and identified. The factors such as the effect of different concentrations of oil, incubation time, mixed cultures and salinity on the biodegradation were investigated. Results: Six crude oil degrading bacteria were isolated. Between these bacteria 2 strains were selected based on higher oil removal. These strains belonged to the genus Vibrio and Halomonas. Strains with higher Emulsification activity produce more biosurfactant and have higher oil biodegradation. Growth and oil degradation have increment pattern by prolonging the incubation time. Mixed culture of Vibrio and Halomonas strains have higher rates of degradation rather than culturing with one of them. Increase in crudeoil concentration to 2.5% caused reduction in growth of bacteria and degradation of oil. Discussion and conclusion: The results of this study show that crude oil degrading bacteria have high diversity in Persian Gulf. These bacteria have higher capability for oil degradation thus they can be used for remediation of oil contaminated areas.

  10. Isolation and identification of oil sludge degrading bacteria from production tank Number 9 Masjed Soleiman

    Directory of Open Access Journals (Sweden)

    Yalda Sheyni

    2014-07-01

    Full Text Available   Introduction: “Bioremediation” is one of the most effective methods to remove petroleum contaminants. The aim of the present study is to isolate the indigenous bacteria from the waste petroleum in the Masjed Soleiman No. 9 production tank and to examine the effect of their application on the elimination of petroleum heavy chain hydrocarbons and converting them into light compounds .   Materials and methods: Two percent of petroleum sludge was inoculated to the mineral basal medium and after proliferation of its indigenous bacteria, they were inoculated into the mixture of oil sludge and sand at level of 5%, and the amount of total hydrocarbons and residual oil were measured and compared. The isolates were identified based on biochemical tests and 16S rRNA gene sequencing. Optimization of nitrogen and phosphate sources was done based on growth curves of selected isolates. Gas chromatography was used to determine degradation of sludge hydrocarbons.   Results: In this study, 10 bacterial isolates were isolated from petroleum sludge . Measurement of petroleum total hydrocarbons, using Soxhlet-extraction method, showed that two isolates named MIS1 and MIS2 are able to decompose oil sludge hydrocarbons within 7 days, with the yields of 62% and 72%, respectively. Furthermore, the two isolates reach the end of the logarithmic phase at 48 and 120 hrs, respectively. The best source of nitrogen and phosphate for both isolates was ammonium nitrate and potassium di ­hydrogen phosphate, respectively. The isolates were identified as Arthrobacter aurescens and Pseudomonas aeruginosa , respectively. In gas chromatography analysis it was revealed that Pseudomonas aeruginosa was more potent in degradation of heavy chain hydrocarbons and their conversion to light chain compounds.   Discussion and conclusion: Resident bacteria are present in the oil sludge and are able to degrade the heavy petroleum compounds and convert them into light compounds. These

  11. Bacteria that degrade hazardous waste: The isolation of trichloroethylene-degrading methanotrophic bacteria and development of monoclonal antibodies specific to them

    International Nuclear Information System (INIS)

    Trichloroethylene (TCE), a suspected carcinogen, is one of the most frequently reported groundwater contaminants at hazardous waste sites in the US. An aerobic, methane-oxidizing bacterium was isolated that degrades TCE in pure culture at concentrations commonly observed in contaminated groundwater. Strain 46-1, a Type I methanotrophic bacterium, degraded TCE when growing on methane or methanol, producing CO2 and water-soluble products. Gas chromatography and 14C radiotracer techniques were used to determine the rate, methane dependence, and mechanism of TCE biodegradation. TCE biodegradation by strain 46-1 appears to be a co-metabolic process that occurs when the organism is actively metabolizing a suitable growth substrate such as methane or methanol. Five mouse monoclonal antibodies (MABS) that specifically bind strain 46-1 were prepared by conventional hybridoma technology. These MABS are apparently biochemically distinct and were used to develop enzyme-linked and fluorescent immunoassays to detect strain 46-1 cells in environmental samples. A fluorescent immunoassay utilizing four of these MABS easily distinguished laboratory-grown 46-1 cells from other methanotrophic and heterotrophic bacteria, but failed to detect 46-1 cells in groundwater samples and cultures

  12. Anaerobic degradation of cyclohexane by sulfate-reducing bacteria from hydrocarbon-contaminated marine sediments

    Directory of Open Access Journals (Sweden)

    Ulrike eJaekel

    2015-02-01

    Full Text Available The fate of cyclohexane, often used as a model compound for the biodegradation of cyclic alkanes due to its abundance in crude oils, in anoxic marine sediments has been poorly investigated. In the present study, we obtained an enrichment culture of cyclohexane-degrading sulfate-reducing bacteria from hydrocarbon-contaminated intertidal marine sediments. Microscopic analyses showed an apparent dominance by oval cells of 1.5×0.8 m. Analysis of a 16S rRNA gene library, followed by whole-cell hybridization with group- and sequence-specific oligonucleotide probes showed that these cells belonged to a single phylotype, and were accounting for more than 80% of the total cell number. The dominant phylotype, affiliated with the Desulfosarcina-Desulfococcus cluster of the Deltaproteobacteria, is proposed to be responsible for the degradation of cyclohexane. Quantitative growth experiments showed that cyclohexane degradation was coupled with the stoichiometric reduction of sulfate to sulfide. Substrate response tests corroborated with hybridization with a sequence-specific oligonucleotide probe suggested that the dominant phylotype apparently was able to degrade other cyclic and n-alkanes, including the gaseous alkanes propane and n-butane. Based on GC-MS analyses of culture extracts cyclohexylsuccinate was identified as a metabolite, indicating an activation of cyclohexane by addition to fumarate. Other metabolites detected were 3-cyclohexylpropionate and cyclohexanecarboxylate providing evidence that the overall degradation pathway of cyclohexane under anoxic conditions is analogous to that of n-alkanes.

  13. Photocatalytic degradation of pathogenic bacteria with AgI/TiO2 under visible light irradiation.

    Science.gov (United States)

    Hu, Chun; Guo, Jian; Qu, Jiuhui; Hu, Xuexiang

    2007-04-24

    The photocatalytic disinfection of pathogenic bacteria in water was investigated systematically with AgI/TiO2 under visible light (lambda > 420 nm) irradiation. The catalyst was found to be highly effective in killing Escherichia coli and Staphylococcus aureus. The adsorbed *OH and hVB+ on the surface of the catalyst were proposed to be the main active oxygen species by study of electron spin resonance and the effect of radical scavengers. The process of destruction of the cell wall and the cell membrane was verified by TEM, potassium ion leakage, lipid peroxidation, and FT-IR measurements. Some products from photocatalytic degradation of bacteria such as aldehydes, ketones, and carboxylic acids were identified by FT-IR spectroscopy. These results suggested that the photocatalytic degradation of the cell structure caused the cell death. The electrostatic force interaction of the bacteria-catalyst significantly affected the efficiency of disinfection on the basis of the E. coli inactivation under different conditions. PMID:17373834

  14. Interfacial interaction between methyl parathion-degrading bacteria and minerals is important in biodegradation.

    Science.gov (United States)

    Zhao, Gang; Huang, Qiaoyun; Rong, Xingmin; Cai, Peng; Liang, Wei; Dai, Ke

    2014-02-01

    In the present study, the influence of kaolinite and goethite on microbial degradation of methyl parathion was investigated. We observed that the biodegradation process was improved by kaolinite and depressed by goethite. Calorimetric data further showed that the metabolic activities of degrading cells (Pseudomonas putida) were enhanced by the presence of kaolinite and depressed by the presence of goethite. A semipermeable membrane experiment was performed and results supported the above observations: the promotive effect of kaolinite and the inhibition of goethite for microbial degradation was not found when the bacteria was enclosed by semipermeable membrane and had no direct contact with these minerals, suggesting the important function of the contact of cellular surfaces with mineral particles. The relative larger particles of kaolinite were loosely attached to the bacteria. This attachment made the cells easy to use the sorbed substrate and then stimulated biodegradation. For goethite, small particles were tightly bound to bacterial cells and limited the acquisition of substrate and nutrients, thereby inhibiting biodegradation. These results indicated that interfacial interaction between bacterial cells and minerals significantly affected the biodegradation of pesticides.

  15. Effects of surfactants on bacteria and the bacterial degradation of alkanes in crude oil

    Energy Technology Data Exchange (ETDEWEB)

    Bruheim, Per

    1998-12-31

    This thesis investigates the effects of surfactants on the bacterial degradation of alkanes in crude oil. Several alkane oxidising Gram positive and Gram negative were tested for their abilities to oxidise alkanes in crude oil emulsified with surfactants. The surfactants used to make the oil in water emulsions were either of microbial or chemical origin. Oxidation rates of resting bacteria oxidising various crude oil in water emulsions were measured by Warburg respirometry. The emulsions were compared with non-emulsified oil to see which was the preferred substrate. The bacteria were pregrown to both the exponential and stationary phase of growth before harvesting and preparation for the Warburg experiments. 123 refs., 4 figs., 14 tabs.

  16. Rapid Isolation of Phenol Degrading Bacteria by Fourier Transform Infrared (FTIR) Spectroscopy.

    Science.gov (United States)

    Li, Fei; Song, Wen-jun; Wei, Ji-ping; Wang, Su-ying; Liu, Chong-ji

    2015-05-01

    Phenol is an important chemical engineering material and ubiquitous in industry wastewater, its existence has become a thorny issue in many developed and developing country. More and more stringent standards for effluent all over the world with human realizing the toxicity of phenol have been announced. Many advanced biological methods are applied to industrial wastewater treatment with low cost, high efficiency and no secondary pollution, but the screening of function microorganisms is certain cumbersome process. In our study a rapid procedure devised for screening bacteria on solid medium can degrade phenol coupled with attenuated total reflection fourier transform infrared (ATR-FTIR) which is a detection method has the characteristics of efficient, fast, high fingerprint were used. Principal component analysis (PCA) is a method in common use to extract fingerprint peaks effectively, it couples with partial least squares (PLS) statistical method could establish a credible model. The model we created using PCA-PLS can reach 99. 5% of coefficient determination and validation data get 99. 4%, which shows the promising fitness and forecasting of the model. The high fitting model is used for predicting the concentration of phenol at solid medium where the bacteria were grown. The highly consistent result of two screening methods, solid cultural with ATR-FTIR detected and traditional liquid cultural detected by GC methods, suggests the former can rapid isolate the bacteria which can degrade substrates as well as traditional cumbersome liquid cultural method. Many hazardous substrates widely existed in industry wastewater, most of them has specialize fingerprint peaks detected by ATR-FTIR, thereby this detected method could be used as a rapid detection for isolation of functional microorganisms those can degrade many other toxic substrates. PMID:26415432

  17. Isolation and Identification of Sodium Fluoroacetate Degrading Bacteria from Caprine Rumen in Brazil

    OpenAIRE

    Camboim, Expedito K. A.; Almeida, Arthur P.; Tadra-Sfeir, Michelle Z.; Junior, Felício G.; Andrade, Paulo P.; McSweeney, Chris S.; Melo, Marcia A; Franklin Riet-Correa

    2012-01-01

    The objective of this paper was to report the isolation of two fluoroacetate degrading bacteria from the rumen of goats. The animals were adult goats, males, crossbred, with rumen fistula, fed with hay, and native pasture. The rumen fluid was obtained through the rumen fistula and immediately was inoculated 100  μ L in mineral medium added with 20 mmol L−1 sodium fluoroacetate (SF), incubated at 39°C in an orbital shaker. Pseudomonas fluorescens (strain DSM 8341) was used as positive control ...

  18. Selection of oleuropein-degrading lactic acid bacteria strains isolated from fermenting Moroccan green olives

    Energy Technology Data Exchange (ETDEWEB)

    Ghabbour, N.; Lamzira, Z.; Thonart, P.; Cidalia, P.; Markaouid, M.; Asehraoua, A.

    2011-07-01

    A total of 177 strains of lactic acid bacteria (LAB) were isolated from early-stage Moroccan Picholine green olive fermentation, including Lactobacillus plantarum (44.63%), Lactobacillus pentosus (25.99%), Lactobacillus brevis (9.61%) and Pediococcus pentosaceus (19.77%). All the isolates were screened for their tolerance to olive leaf extract and oleuropein. Most of the isolates (85.3%) were found able to degrade oleuropein, when evaluated by either oleuropein or 5-Bromo-4-chloro-3-indolyl {beta}-D-glucuronide (X-Gluc) as substrates. The biodegradation capacity of the selected strains of each species was confirmed by HPLC analysis. (Author).

  19. Selection of oleuropein-degrading lactic acid bacteria strains isolated from fermenting Moroccan green olives

    OpenAIRE

    Ghabbour, N.; Lamzira, Z.; Thonart, P.; Cidalia, P.; Markaoui, M.; Asehraou, A.

    2011-01-01

    A total of 177 strains of lactic acid bacteria (LAB) were isolated from early-stage Moroccan Picholine green olive fermentation, including Lactobacillus plantarum (44.63%), Lactobacillus pentosus (25.99%), Lactobacillus brevis (9.61%) and Pediococcus pentosaceus (19.77%). All the isolates were screened for their tolerance to olive leaf extract and oleuropein. Most of the isolates (85.3%) were found able to degrade ole...

  20. Modelling TCE degradation by a mixed culture of methane-oxidizing bacteria

    DEFF Research Database (Denmark)

    Broholm, Kim; Christensen, Thomas Højlund; Jensen, Bjørn K.

    1992-01-01

    A model describing the growth of bacteria and the degradation of methane and trichloroethylene (TCE) based on the concept of competitive inhibition is proposed. The model has been applied to laboratory batch experiments representing different initial TCE concentrations (50–4300 μg/l) and initial...... methane concentrations (0.53–3.2 mg/l). The proposed model simulated successfully the data obtained for initial methane concentration (less than 1.8 mg/l), causing constant experimental growth conditions during the experiments. This indicates that the interactions between methane and TCE degradation can...... be explained as competitive inhibition. The model simulations of the results from the experiments with the highest initial methane concentration of 3.2 mg/l failed, supposedly because the growth conditions changed during the experiments. The proposed model is a useful engineering tool for design of treatment...

  1. Molecular identification of the isolated diesel degrading bacteria and optimization studies

    Directory of Open Access Journals (Sweden)

    Janani Prathiba G

    2014-08-01

    Full Text Available Normal 0 false false false EN-US X-NONE X-NONE MicrosoftInternetExplorer4 Diesel, a refinery product of crude oil constitutes a major source of pollution in our environment. Poor solubility in water and the higher content in sediments make diesel a potential water pollutant. Bioremediation of contaminated aquatic and soil environments has arisen as an effective technology, with a range of advantages compared to more traditional methods. A total of 9 bacteria were isolated from three petroleum contaminated soil samples and isolate 3 of sample 1 showed maximum degradation potential of diesel in both primary and secondary screening tests. Hence, it was subjected for 16srDNA study and sequence alignment by BLASTN identified the isolate as Pseudomonas aeruginosa strain KEB24. The reaction conditions for efficient diesel degradation by the isolate were optimized.

  2. Isolation and Identification of Carcinogen Acenaphthene-Degrading Endemic Bacteria from Crude Oil Contaminated Soils around Abadan Refinery

    Directory of Open Access Journals (Sweden)

    Farshid Kafilzadeh

    2012-12-01

    Full Text Available Background and Objective: PAHs are non-polar organic compounds consisting of two or more fused benzene multi-rings. Among these compounds, acenaphthene is a multi-ring hydrocarbon that occurs abundantly in nature. Use of microorganisms to clean the contaminations of soil can be cheap and effective. The most important acenaphthene-degrading bacteria are pseudomonas, micrococcus, and Bacillus. The goal of this study was to isolate and identify the bacteria which degrade acenaphthene in soils around Abadan Refinery and to investigate the relation between the levels of environmental pollution with acenaphthene. Materials and Methods: Soil samples were collected from three areas around Abadan Refinery. The number of the bacteria was counted on the nutrient agar culture with and without acenaphthene. Isolation of the bacteria was done by culturing the samples on acenaphthene broth with a mineral-salt medium, and on an acenaphthene agar medium. Then, the bacteria were identified via biochemical diagnostic tests. Results: The logarithm average of the bacteria was 4.786 ± 0.073 at a medium with acenaphthene, which was 6.671 ± 0.073 less than that of the control medium. The maximum number of degrading bacteria was 7.089 ± 0.089 at Station C, and the minimum number of the degrading bacteria was 4.485 ± 0.089 at Station B. In this study, Bacillus sp, Micrococcus Luteus, Corynebacterium sp, Staphylococcus epidermidis, and Pseudomonas sp bacteria were isolated and identified in terms of frequency, respectively. Conclusion: The results of this study showed that the soil around Abadan Refinery contained a great number of acenaphthene degrading bacteria, especially Bacillus and Micrococcus.

  3. Oxalate-Degrading Capacities of Gastrointestinal Lactic Acid Bacteria and Urinary Tract Stone Formation

    Directory of Open Access Journals (Sweden)

    Mohammad Kargar

    2013-10-01

    Full Text Available Background: Calcium oxalate is one the most significant causes of human kidney stones. Increasing oxalate uptake results in increased urinary oxalate. Elevated urinary oxalate is one the most important causes of kidney stone formation. This study aims to evaluate oxalate-degrading capacity of lactic acid bacteria and its impact on incidence of kidney stone.Materials and Methods: This case-control study was conducted on serum, urinary, and fecal samples. The research population included a total of 200 subjects divided in two equal groups. They were selected from the patients with urinary tract stones, visiting urologist, and also normal people. The level of calcium, oxalate, and citrate in the urinary samples, parathyroid and calcium in the serum samples, and degrading activity of fecal lactobacillus strains of all the subjects were evaluated. Then, data analysis was carried out using SPSS-11.5, χ2 test, Fisher’s exact test, and analysis of variance. Results: The results revealed that the patients had higher urinary level of oxalate and calcium, as well as higher serum level of parathyroid hormone than normal people. In contrast, urinary level of citrate was higher in normal people. In addition, there was a significant difference between the oxalate-degrading capacities of lactobacillus isolated from the patients and their normal peers.Conclusion: Reduction of digestive lactobacillus-related oxalate-degrading capacity and increased serum level of parathyroid hormone can cause elevated urinary level of oxalate and calcium in people with kidney stone.

  4. [Bacteria that degrade low-molecular linear epsilon-caprolactam olygomers].

    Science.gov (United States)

    Esikova, T Z; Akatova, E V; Taran, S A

    2014-01-01

    Five bacterial strains with the unique ability to utilize low-molecular linear caprolactam olygomers (nylon olygomers) were isolated from soil samples contaminated with industrial wastes of epsilon-caprolactam. Based on the properties studied and also on the analysis of 16S rRNA gene nucleotide sequences, the strains BS2,BS3, BS9, BS38, and BS57 were classified to the general Arthrobacter, Brevibacterium, Microbacteriun, Gulosibacter, and Achromobacter, respectively. All of the strains also utilized 6-aminohexanoic and adipic acids, which are intermidiates of the epsilon-caprolactam catabolism. This indirectly points to the fact that degradation of olygomers in these bacteria occurs via the monomer degradation pathway. The BS9 and BS57 strains utilized only olygomers of the epsilon-caprolactam, while BS2, BS3, and BS38 also degraded epsilon-caprolactam and its homologs, enantolactam and caprylolactam, which differentiates the latter from the previously known degraders of olygomers and suggests the presence in these strains of enzymes with lactam hydrolase activity, in addition to 6-aminohexanoate-dimer hydrolase. PMID:25707105

  5. Performance and dye-degrading bacteria isolation of a hybrid membrane process

    Energy Technology Data Exchange (ETDEWEB)

    You, Sheng-Jie, E-mail: sjyou@cycu.edu.tw [Department of Bioenvironmental Engineering and R and D Center for Membrane Technology, Chung Yuan Christian University, No. 200, Rd. Chung-Pei, Chungli 320, Taiwan (China); Teng, Jun-Yu, E-mail: nickprometheus@yahoo.com.tw [Department of Civil Engineering, Chung Yuan Christian University, Chungli 320, Taiwan (China)

    2009-12-15

    Textile dyeing wastewater contains harmful compounds, which are toxic to both marine organisms and human beings if it discharged into an aquatic environmental without suitable treatment. In this study, the wastewater containing the azo dye, Reactive Black 5 (RB5), was partially treated in an anaerobic sequencing batch reactor which was further treated either in an aerobic membrane bioreactors (AOMBR) or in combined aerobic membrane bioreactor/reverse osmosis (AOMBR/RO) process. The results showed that in the anaerobic sequencing batch reactor the RB5 dye was degraded to form aromatic amine intermediate metabolites, which were further mineralized in the AOMBR. It was also observed that although all effluents from the AOMBR and AOMBR/RO processes met the Taiwan EPA's effluent criteria, irrespective of which membranes were used in the aerobic tank, the effluent from the AOMBR/RO process met the criteria for reuse for toilet flushing, landscaping, irrigation, and cooling water purposes, where as the AOMBR effluent only met the criteria for cooling water due to incomplete color removal. Five anaerobic high dye-degrading bacteria were isolated, which were identified to be the same species of Lactococcus lactis by 16S rRNA sequencing. The L. lactis showed complete degradation of RB5 and further studies showed that it can also able to degrade Reactive Red 120 and Reactive Yellow 84 efficiently within 6 h.

  6. Isolation of Cellulose-Degrading Bacteria and Determination of Their Cellulolytic Potential

    Directory of Open Access Journals (Sweden)

    Pratima Gupta

    2012-01-01

    Full Text Available Eight isolates of cellulose-degrading bacteria (CDB were isolated from four different invertebrates (termite, snail, caterpillar, and bookworm by enriching the basal culture medium with filter paper as substrate for cellulose degradation. To indicate the cellulase activity of the organisms, diameter of clear zone around the colony and hydrolytic value on cellulose Congo Red agar media were measured. CDB 8 and CDB 10 exhibited the maximum zone of clearance around the colony with diameter of 45 and 50 mm and with the hydrolytic value of 9 and 9.8, respectively. The enzyme assays for two enzymes, filter paper cellulase (FPC, and cellulase (endoglucanase, were examined by methods recommended by the International Union of Pure and Applied Chemistry (IUPAC. The extracellular cellulase activities ranged from 0.012 to 0.196 IU/mL for FPC and 0.162 to 0.400 IU/mL for endoglucanase assay. All the cultures were also further tested for their capacity to degrade filter paper by gravimetric method. The maximum filter paper degradation percentage was estimated to be 65.7 for CDB 8. Selected bacterial isolates CDB 2, 7, 8, and 10 were co-cultured with Saccharomyces cerevisiae for simultaneous saccharification and fermentation. Ethanol production was positively tested after five days of incubation with acidified potassium dichromate.

  7. Importance of Unattached Bacteria and Bacteria Attached to Sediment in Determining Potentials for Degradation of Xenobiotic Organic Contaminants in an Aerobic Aquifer

    DEFF Research Database (Denmark)

    Nielsen, Per Henning; Albrechtsen, Hans-Jørgen; Christensen, Thomas Højlund;

    1992-01-01

    The bacterial abundance, distribution, and degradation potential (in terms of degradation versus lack of degradation) for four xenobiotic compounds in an aerobic aquifer sediment have been examined in laboratory and field experiments. The xenobiotic compounds studied were benzene, toluene, o......-xylene, and naphthalene (all at concentrations of approximately 120 pg/liter). The aerobic degradation experiments ran for approximately 90 days at 10°C, which corresponded to the groundwater temperature. At the end of the experiment, the major part of the microbial biomass, quantified as acridine orange direct counts...... for studying the degradation potential for xenobiotic organic contaminants should contain sediment to obtain the highest numbers of bacteria as well as the broadest and most stable degradation. When only the fine (silt- and clay-size) particles of the sediment were used, nearly the same advantages were gained...

  8. Potential for plant growth promotion by a consortium of stress-tolerant 2,4-dinitrotoluene-degrading bacteria: isolation and characterization of a military soil.

    Science.gov (United States)

    Thijs, Sofie; Weyens, Nele; Sillen, Wouter; Gkorezis, Panagiotis; Carleer, Robert; Vangronsveld, Jaco

    2014-07-01

    The presence of explosives in soils and the interaction with drought stress and nutrient limitation are among the environmental factors that severely affect plant growth on military soils. In this study, we seek to isolate and identify the cultivable bacteria of a 2,4-dinitrotoluene (DNT) contaminated soil (DS) and an adjacent grassland soil (GS) of a military training area aiming to isolate new plant growth-promoting (PGP) and 2,4-DNT-degrading strains. Metabolic profiling revealed disturbances in Ecocarbon use in the bare DS; isolation of cultivable strains revealed a lower colony-forming-unit count and a less diverse community associated with DS in comparison with GS. New 2,4-DNT-tolerant strains were identified by selective enrichments, which were further characterized by auxanography for 2,4-DNT use, resistance to drought stress, cold, nutrient starvation and PGP features. By selecting multiple beneficial PGP and abiotic stress-resistant strains, efficient 2,4-DNT-degrading consortia were composed. After inoculation, consortium UHasselt Sofie 3 with seven members belonging to Burkholderia, Variovorax, Bacillus, Pseudomonas and Ralstonia species was capable to successfully enhance root length of Arabidopsis under 2,4-DNT stress. After 9 days, doubling of main root length was observed. Our results indicate that beneficial bacteria inhabiting a disturbed environment have the potential to improve plant growth and alleviate 2,4-DNT stress.

  9. Phenolic acid degradation potential and growth behavior of lactic acid bacteria in sunflower substrates.

    Science.gov (United States)

    Fritsch, Caroline; Heinrich, Veronika; Vogel, Rudi F; Toelstede, Simone

    2016-08-01

    Sunflower flour provides a high content of protein with a well-balanced amino acid composition and is therefore regarded as an attractive source for protein. The use for human nutrition is hindered by phenolic compounds, mainly chlorogenic acid, which can lead under specific circumstances to undesirable discolorations. In this study, growth behavior and degradation ability of chlorogenic acid of four lactic acid bacteria were explored. Data suggested that significant higher fermentation performances on sunflower flour as compared to sunflower protein concentrate were reached by Lactobacillus plantarum, Pediococcus pentosaceus, Lactobacillus gasseri and Bifidobacterium animalis subsp. lactis. In fermentation with the latter two strains reduced amounts of chlorogenic acid were observed in sunflower flour (-11.4% and -19.8%, respectively), which were more pronounced in the protein concentrate (-50.7% and -95.6%, respectively). High tolerances against chlorogenic acid and the cleavage product quinic acid with a minimum inhibitory concentration (MIC) of ≥20.48 mg/ml after 48 h were recorded for all strains except Bifidobacterium animalis subsp. lactis, which was more sensitive. The second cleavage compound, caffeic acid revealed a higher antimicrobial potential with MIC values of 0.64-5.12 mg/ml. In this proof of concept study, degradation versus inhibitory effect suggest the existence of basic mechanisms of interaction between phenolic acids in sunflower and lactic acid bacteria and a feasible way to reduce the chlorogenic acid content, which may help to avoid undesired color changes.

  10. Isolation and Identification of Sodium Fluoroacetate Degrading Bacteria from Caprine Rumen in Brazil

    Directory of Open Access Journals (Sweden)

    Expedito K. A. Camboim

    2012-01-01

    Full Text Available The objective of this paper was to report the isolation of two fluoroacetate degrading bacteria from the rumen of goats. The animals were adult goats, males, crossbred, with rumen fistula, fed with hay, and native pasture. The rumen fluid was obtained through the rumen fistula and immediately was inoculated 100 μL in mineral medium added with 20 mmol L−1 sodium fluoroacetate (SF, incubated at 39°C in an orbital shaker. Pseudomonas fluorescens (strain DSM 8341 was used as positive control for fluoroacetate dehalogenase activity. Two isolates were identified by 16S rRNA gene sequencing as Pigmentiphaga kullae (ECPB08 and Ancylobacter dichloromethanicus (ECPB09. These bacteria degraded sodium fluoroacetate, releasing 20 mmol L−1 of fluoride ion after 32 hours of incubation in Brunner medium containing 20 mmol L−1 of SF. There are no previous reports of fluoroacetate dehalogenase activity for P. kullae and A. dichloromethanicus. Control measures to prevent plant intoxication, including use of fences, herbicides, or other methods of eliminating poisonous plants, have been unsuccessful to avoid poisoning by fluoroacetate containing plants in Brazil. In this way, P. kullae and A. dichloromethanicus may be used to colonize the rumen of susceptible animals to avoid intoxication by fluoroacetate containing plants.

  11. Aquatic Organisms and Petroleum Hydrocarbon Degrading Bacteria Associated with Their Digestive System

    Directory of Open Access Journals (Sweden)

    Janina Šyvokienė

    2014-01-01

    Full Text Available Laboratory investigation was carried out on the abundance and composition of bacteria in the digestive system of a total of 35 specimens, including bivalve molluscs, i.e. swan mussel Anodonta cygnea (Linnaeus, 1758 from Lake Spėra (Širvintos district and swollen river mussel Unio tumidus (Philipson, 1788 from the Curonian Lagoon near Juodkrantė, zebra mussel (Dreissena polymorpha from the Curonian Lagoon near Juodkrantė and an anostracan – Chirocephalus josephinae (Grube, 1853 from a pond in Ilčiukai village, Utena district, and in the water of related water bodies. Studies on bivalve molluscs (swan mussel and swollen river mussel, zebra mussel and an anostracan – Chirocephalus josephinae, as well as microbiological investigation of water demonstrated that the number of microorganisms in the digestive system of mollusc and anostracan species fluctuated and varied between different species and water bodies. The greatest percentage of HDB among total heterotrophic bacteria was found in the digestive system of swollen river mussels (21.53% and in zebra mussels (19.99% caught in the Curonian Lagoon and in the water of the lagoon (24%. A considerably smaller percentage of HDB was detected in the digestive system of swan mussels from Lake Spėra (17.6% and in the water of the lake (16.66%. The smallest percentage of HDB was found in the digestive system of Chirocephalus josephinae (6.63% and in the water of the Ilčiukai pond (2.72%. According to the values of abundance of petroleum hydrocarbon-degrading bacteria (HDB and total coliform bacteria (TCFB in the digestive system of aquatic organisms we can state that the water ecosystem of Ilčiukai pond was the least contaminated with petroleum, its products and sewage water, and the Curonian Lagoon water ecosystem was the most contaminated. Abundance of petroleum hydrocarbons degrading bacteria could be used as a bioindicator reflecting the level of ecosystem pollution petroleum and its

  12. Aquatic Organisms and Petroleum Hydrocarbon Degrading Bacteria Associated with Their Digestive System

    Directory of Open Access Journals (Sweden)

    Janina Šyvokienė

    2013-12-01

    Full Text Available Laboratory investigation was carried out on the abundance and composition of bacteria in the digestive system of a total of 35 specimens, including bivalve molluscs, i.e. swan mussel Anodonta cygnea (Linnaeus, 1758 from Lake Spėra (Širvintos district and swollen river mussel Unio tumidus (Philipson, 1788 from the Curonian Lagoon near Juodkrantė, zebra mussel (Dreissena polymorpha from the Curonian Lagoon near Juodkrantė and an anostracan – Chirocephalus josephinae (Grube, 1853 from a pond in Ilčiukai village, Utena district, and in the water of related water bodies. Studies on bivalve molluscs (swan mussel and swollen river mussel, zebra mussel and an anostracan – Chirocephalus josephinae, as well as microbiological investigation of water demonstrated that the number of microorganisms in the digestive system of mollusc and anostracan species fluctuated and varied between different species and water bodies. The greatest percentage of HDB among total heterotrophic bacteria was found in the digestive system of swollen river mussels (21.53% and in zebra mussels (19.99% caught in the Curonian Lagoon and in the water of the lagoon (24%. A considerably smaller percentage of HDB was detected in the digestive system of swan mussels from Lake Spėra (17.6% and in the water of the lake (16.66%. The smallest percentage of HDB was found in the digestive system of Chirocephalus josephinae (6.63% and in the water of the Ilčiukai pond (2.72%. According to the values of abundance of petroleum hydrocarbon-degrading bacteria (HDB and total coliform bacteria (TCFB in the digestive system of aquatic organisms we can state that the water ecosystem of Ilčiukai pond was the least contaminated with petroleum, its products and sewage water, and the Curonian Lagoon water ecosystem was the most contaminated. Abundance of petroleum hydrocarbons degrading bacteria could be used as a bioindicator reflecting the level of ecosystem pollution petroleum and its

  13. Production of rhamnolipids and diesel oil degradation by bacteria isolated from soil contaminated by petroleum.

    Science.gov (United States)

    Leite, Giuseppe G F; Figueirôa, Juciane V; Almeida, Thiago C M; Valões, Jaqueline L; Marques, Walber F; Duarte, Maria D D C; Gorlach-Lira, Krystyna

    2016-03-01

    Biosurfactants are microbial secondary metabolites. The most studied are rhamnolipids, which decrease the surface tension and have emulsifying capacity. In this study, the production of biosurfactants, with emphasis on rhamnolipids, and diesel oil degradation by 18 strains of bacteria isolated from waste landfill soil contaminated by petroleum was analyzed. Among the studied bacteria, gram-positive endospore forming rods (39%), gram positive rods without endospores (17%), and gram-negative rods (44%) were found. The following methods were used to test for biosurfactant production: oil spreading, emulsification, and hemolytic activity. All strains showed the ability to disperse the diesel oil, while 77% and 44% of the strains showed hemolysis and emulsification of diesel oil, respectively. Rhamnolipids production was observed in four strains that were classified on the basis of the 16S rRNA sequences as Pseudomonas aeruginosa. Only those strains showed the rhlAB gene involved in rhamnolipids synthesis, and antibacterial activity against Escherichia coli, P. aeruginosa, Staphylococcus aureus, Bacillus cereus, Erwinia carotovora, and Ralstonia solanacearum. The highest production of rhamnolipids was 565.7 mg/L observed in mineral medium containing olive oil (pH 8). With regard to the capacity to degrade diesel oil, it was observed that 7 strains were positive in reduction of the dye 2,6-dichlorophenolindophenol (2,6-DCPIP) while 16 had the gene alkane mono-oxygenase (alkB), and the producers of rhamnolipids were positive in both tests. Several bacterial strains have shown high potential to be explored further for bioremediation purposes due to their simultaneous ability to emulsify, disperse, and degrade diesel oil. © 2015 American Institute of Chemical Engineers Biotechnol. Prog., 32:262-270, 2016. PMID:26588432

  14. Rhizosphere of Avicennia marina (Forsk.) Vierh. as a landmark for polythene degrading bacteria.

    Science.gov (United States)

    Shahnawaz, Mohd; Sangale, Manisha K; Ade, Avinash B

    2016-07-01

    Due to high durability, cheap cost, and ease of manufacture, 311 million tons of plastic-based products are manufactured around the globe per annum. The slow/least rate of plastic degradation leads to generation of million tons of plastic waste per annum, which is of great environmental concern. Of the total plastic waste generated, polythene shared about 64 %. Various methods are available in the literature to tackle with the plastic waste, and biodegradation is considered as the most accepted, eco-friendly, and cost-effective method of polythene waste disposal. In the present study, an attempt has been made to isolate, screen, and characterize the most efficient polythene degrading bacteria by using rhizosphere soil of Avicennia marina as a landmark. From 12 localities along the west coast of India, a total of 123 bacterial isolates were recorded. Maximum percent weight loss (% WL; 21.87 ± 6.37 %) was recorded with VASB14 at pH 3.5 after 2 months of shaking at room temperature. Maximum percent weight gain (13.87 ± 3.6 %) was reported with MANGB5 at pH 7. Maximum percent loss in tensile strength (% loss in TS; 87.50 ± 4.8 %) was documented with VASB1 at pH 9.5. The results based on the % loss in TS were only reproducible. Further, the level of degradation was confirmed by scanning electron microscopic (SEM) and Fourier transform infrared spectroscopy (FTIR) analysis. In SEM analysis, scions/crakes were found on the surface of the degraded polythene, and mass of bacterial cell was also recorded on the weight-gained polythene strips. Maximum reduction in carbonyl index (4.14 %) was recorded in untreated polythene strip with Lysinibacillus fusiformis strain VASB14/WL. Based on 16S ribosomal RNA (rRNA) gene sequence homology, the most efficient polythene degrading bacteria were identified as L. fusiformis strainVASB14/WL and Bacillus cereus strain VASB1/TS. PMID:27072028

  15. Genetic characterization of caffeine degradation by bacteria and its potential applications.

    Science.gov (United States)

    Summers, Ryan M; Mohanty, Sujit K; Gopishetty, Sridhar; Subramanian, Mani

    2015-05-01

    The ability of bacteria to grow on caffeine as sole carbon and nitrogen source has been known for over 40 years. Extensive research into this subject has revealed two distinct pathways, N-demethylation and C-8 oxidation, for bacterial caffeine degradation. However, the enzymological and genetic basis for bacterial caffeine degradation has only recently been discovered. This review article discusses the recent discoveries of the genes responsible for both N-demethylation and C-8 oxidation. All of the genes for the N-demethylation pathway, encoding enzymes in the Rieske oxygenase family, reside on 13.2-kb genomic DNA fragment found in Pseudomonas putida CBB5. A nearly identical DNA fragment, with homologous genes in similar orientation, is found in Pseudomonas sp. CES. Similarly, genes for C-8 oxidation of caffeine have been located on a 25.2-kb genomic DNA fragment of Pseudomonas sp. CBB1. The C-8 oxidation genes encode enzymes similar to those found in the uric acid metabolic pathway of Klebsiella pneumoniae. Various biotechnological applications of these genes responsible for bacterial caffeine degradation, including bio-decaffeination, remediation of caffeine-contaminated environments, production of chemical and fuels and development of diagnostic tests have also been demonstrated.

  16. Insights into the genetic diversity of initial dioxygenases from PAH-degrading bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Moser, R.; Stahl, U. [Technische Univ. Berlin, Inst. fuer Biotechnologie, Mikrobiologie und Genetik, Berlin (Germany)

    2001-07-01

    Alpha subunit genes of initial polyaromatic hydrocarbon (PAH) dioxygenases were used as targets for the PCR detection of PAH-degrading strains of the genera Pseudomonas, Comamonas and Rhodococcus which were obtained from activated sludge or soil samples. Sequence analysis of PCR products from several Pseudomonas strains showed that alpha subunits (nahAc allele) of this genus are highly conserved. PCR primers for the specific detection of alpha subunit genes of initial PAH dioxygenases from Pseudomonas strains were not suitable for detecting the corresponding genes from the genera Comamonas and Rhodococcus. Southern analysis using a heterologous gene probe derived from the P. putida OUS82 PAH dioxygenase alpha subunit identified segments of the PAH-degradation gene cluster from C. testosteroni strain H. Parts of this gene cluster containing three subunits of the initial PAH dioxygenase were isolated. These three subunits [ferredoxin (pahAb), alpha (pahAc) and beta (pahAd) subunit] were amplified by PCR as one fragment and expressed in Escherichia coli DH5{alpha}, resulting in an active initial dioxygenase with the ability to transform indole and phenanthrene. The DNA sequence alignment of alpha subunits from C. testosteroni H and various PAH-degrading bacteria permitted the design of new primers and oligonucleotide probes which are useful for the detection of the initial PAH dioxygenases from strains of Pseudomonas, Comamonas and Rhodococcus. (orig.)

  17. Sequential Isolation of Saturated, Aromatic, Resinic and Asphaltic Fractions Degrading Bacteria from Oil Contaminated Soil in South Sumatera

    Directory of Open Access Journals (Sweden)

    Pingkan Aditiawati

    2012-04-01

    Full Text Available Sequential isolation has been conducted to obtain isolates of saturated, aromatic, resin, and asphaltene fractions degrading bacteria from oil contaminated sites. Five soil samples were collected from South Sumatera. These were analyzed using soil extract medium enriched with oil recovery or Remaining-Oil recovery Degradated (ROD as sole carbon and energy sources according to the isolation stage. ROD at the end of every isolation stage analyzed oil fractions by use of the SARA analysis method. Six isolates of bacteria have been selected, one isolate was fraction saturates degrading bacteria that are Mycobacterium sp. T1H2D4-7 at degradation rate 0.0199 mgs/h with density 8.4x106 cfu/g from stage I. The isolate T2H1D2-4, identified as Pseudomonas sp. was fraction aromatics degrading bacteria at accelerate 0.0141 mgs/h with density 5.1x106 cfu/g are obtained at stage II. Two isolates namely Micrococcus sp. T3H2D4-2 and Pseudomonas sp. T1H1D5-5 were fraction resins degrading bacteria by accelerate 0.0088 mgs/h at density 5.6x106 cfu/g and 0.0089 mgs/h at density 5.7x106 cfu/g are obtained at stage III. Isolation of stage IV has been obtained two isolates Pseudomonas sp. T4H1D3-1and Pseudomonas sp. T4H3D5-4 were fraction asphaltenes degrading bacteria by accelerate 0.0057 mgs/h at density 5.6x106 cfu/g and accelerate 0.0058 mgs/h at density 5.7x106 cfu/g.

  18. Detection of the spectroscopic signatures of explosives and their degradation products

    Science.gov (United States)

    Florian, Vivian; Cabanzo, Andrea; Baez, Bibiana; Correa, Sandra; Irrazabal, Maik; Briano, Julio G.; Castro, Miguel E.; Hernandez-Rivera, Samuel P.

    2005-06-01

    Detection and removal of antipersonnel and antitank landmines is a great challenge and a worldwide enviromental and humanitarian problem. Sensors tuned on the spectroscopic signature of the chemicals released from mines are a potential solution. Enviromental factors (temperature, relative humidity, rainfall precipitation, wind, sun irradiation, pressure, etc.) as well as soil characteristics (water content, compaction, porosity, chemical composition, particle size distribution, topography, vegetation, etc), have a direct impact on the fate and transport of the chemicals released from landmines. Chemicals such as TNT, DNT and their degradation products, are semi-volatile, and somewhat soluble in water. Also, they may adsorb strongly to soil particles, and are susceptible to degradation by microorganisms, light, or chemical agents. Here we show an experimental procedure to quantify the effect of the above variables on the spectroscopic signature. A number of soil tanks under controlled conditions are used to study the effect of temperature, water content, relative humidity and light radiation.

  19. Harboring oil-degrading bacteria: a potential mechanism of adaptation and survival in corals inhabiting oil-contaminated reefs.

    Science.gov (United States)

    Al-Dahash, Lulwa M; Mahmoud, Huda M

    2013-07-30

    Certain coral reef systems north of the Arabian Gulf are characterized by corals with a unique ability to thrive and flourish despite the presence of crude oil continuously seeping from natural cracks in the seabed. Harboring oil-degrading bacteria as a part of the holobiont has been investigated as a potential mechanism of adaptation and survival for corals in such systems. The use of conventional and molecular techniques verified a predominance of bacteria affiliated with Gammaproteobacteria, Actinobacteria and Firmicutes in the mucus and tissues of Acropora clathrata and Porites compressa. These bacteria were capable of degrading a wide range of aliphatic (C9-C28) aromatic hydrocarbons (Phenanthrene, Biphenyl, Naphthalene) and crude oil. In addition, microcosms supplied with coral samples and various concentrations of crude oil shifted their bacterial population toward the more advantageous types of oil degraders as oil concentrations increased. PMID:23014479

  20. Toxicity of tetracyclines and tetracycline degradation products to environmentally relevant bacteria, including selected tetracycline-resistant bacteria

    DEFF Research Database (Denmark)

    Halling-Sørensen, B.; Sengeløv, G.; Tjørnelund, J.

    2002-01-01

    Tetracyclines used in veterinary therapy invariably will find their way as parent compound and degradation products to the agricultural field. Major degradation products formed due to the limited stability of parent tetracyclines (tetracycline, chlortetracycline, and oxytetracycline) in aqueous s...

  1. Influence of compost amendments on the diversity of alkane degrading bacteria in hydrocarbon contaminated soils

    Directory of Open Access Journals (Sweden)

    Michael eSchloter

    2014-03-01

    Full Text Available Alkane degrading microorganisms play an important role for bioremediation of petrogenic contaminated environments. In this study, we investigated the effects of compost addition on the diversity of alkane monooxygenase gene (alkB harboring bacteria in oil-contaminated soil originated from an industrial zone in Celje, Slovenia, to improve our understanding about the bacterial community involved in alkane degradation and the effects of amendments. Soil without any amendments (control soil and soil amended with compost of different maturation stages, i 1 year and ii 2 weeks, were incubated under controlled conditions in a microcosm experiment and sampled after 0, 6, 12 and 36 weeks of incubation. By using quantitative real-time PCR higher number of alkB genes could be detected in soil samples with compost compared to the control soil after 6, 12 and 36 weeks mainly if the less maturated compost was added. To get an insight into the composition of the alkB harboring microbial communities, we performed next generation sequencing of alkB gene fragment amplicons. Richness and diversity of alkB gene harboring prokaryotes was higher in soil mixed with compost compared to control soil after 6, 12 and 36 weeks again with stronger effects of the less maturated compost. Comparison of communities detected in different samples and time points based on principle component analysis revealed that the addition of compost in general stimulated the abundance of alkB harboring Actinobacteria during the experiment independent from the maturation stage of the compost compared to the control soils. In addition alkB harboring proteobacteria like Shewanella or Hydrocarboniphaga as well as proteobacteria of the genus Agrobacterium responded positively to the addition of compost to soil The amendment of the less maturated compost resulted in addition in a large increase of alkB harboring bacteria of the Cytophaga group (Microscilla mainly at the early sampling

  2. Phenolic acid degradation potential and growth behavior of lactic acid bacteria in sunflower substrates.

    Science.gov (United States)

    Fritsch, Caroline; Heinrich, Veronika; Vogel, Rudi F; Toelstede, Simone

    2016-08-01

    Sunflower flour provides a high content of protein with a well-balanced amino acid composition and is therefore regarded as an attractive source for protein. The use for human nutrition is hindered by phenolic compounds, mainly chlorogenic acid, which can lead under specific circumstances to undesirable discolorations. In this study, growth behavior and degradation ability of chlorogenic acid of four lactic acid bacteria were explored. Data suggested that significant higher fermentation performances on sunflower flour as compared to sunflower protein concentrate were reached by Lactobacillus plantarum, Pediococcus pentosaceus, Lactobacillus gasseri and Bifidobacterium animalis subsp. lactis. In fermentation with the latter two strains reduced amounts of chlorogenic acid were observed in sunflower flour (-11.4% and -19.8%, respectively), which were more pronounced in the protein concentrate (-50.7% and -95.6%, respectively). High tolerances against chlorogenic acid and the cleavage product quinic acid with a minimum inhibitory concentration (MIC) of ≥20.48 mg/ml after 48 h were recorded for all strains except Bifidobacterium animalis subsp. lactis, which was more sensitive. The second cleavage compound, caffeic acid revealed a higher antimicrobial potential with MIC values of 0.64-5.12 mg/ml. In this proof of concept study, degradation versus inhibitory effect suggest the existence of basic mechanisms of interaction between phenolic acids in sunflower and lactic acid bacteria and a feasible way to reduce the chlorogenic acid content, which may help to avoid undesired color changes. PMID:27052717

  3. The effect of inoculation of an indigenous bacteria on the early growth of Acacia farnesiana in a degraded area

    OpenAIRE

    Eliane Ceccon; Anayeli Almazo-Rogel; Esperanza Martínez-Romero; Ivonne Toledo

    2012-01-01

    Restoration of native vegetation and fuelwood production are important environmental pending goals for Mexico, where years of wrong management practices resulted in ecosystemic degradation and fuelwood scarcity. In degraded areas, native rhizobial strains are often undetectable, therefore, the restoration of natural vegetation associated with an effective nodulation of the leguminous trees is mostly appropriate. Sinorhizobium americanum is a native nitrogen-fixing bacteria isolated from nodul...

  4. The Cultivable Surface Microbiota of the Brown Alga Ascophyllum nodosum is Enriched in Macroalgal-Polysaccharide-Degrading Bacteria.

    Science.gov (United States)

    Martin, Marjolaine; Barbeyron, Tristan; Martin, Renee; Portetelle, Daniel; Michel, Gurvan; Vandenbol, Micheline

    2015-01-01

    Bacteria degrading algal polysaccharides are key players in the global carbon cycle and in algal biomass recycling. Yet the water column, which has been studied largely by metagenomic approaches, is poor in such bacteria and their algal-polysaccharide-degrading enzymes. Even more surprisingly, the few published studies on seaweed-associated microbiomes have revealed low abundances of such bacteria and their specific enzymes. However, as macroalgal cell-wall polysaccharides do not accumulate in nature, these bacteria and their unique polysaccharidases must not be that uncommon. We, therefore, looked at the polysaccharide-degrading activity of the cultivable bacterial subpopulation associated with Ascophyllum nodosum. From A. nodosum triplicates, 324 bacteria were isolated and taxonomically identified. Out of these isolates, 78 (~25%) were found to act on at least one tested algal polysaccharide (agar, ι- or κ-carrageenan, or alginate). The isolates "active" on algal-polysaccharides belong to 11 genera: Cellulophaga, Maribacter, Algibacter, and Zobellia in the class Flavobacteriia (41) and Pseudoalteromonas, Vibrio, Cobetia, Shewanella, Colwellia, Marinomonas, and Paraglaceciola in the class Gammaproteobacteria (37). A major part represents likely novel species. Different proportions of bacterial phyla and classes were observed between the isolated cultivable subpopulation and the total microbial community previously identified on other brown algae. Here, Bacteroidetes and Gammaproteobacteria were found to be the most abundant and some phyla (as Planctomycetes and Cyanobacteria) frequently encountered on brown algae weren't identified. At a lower taxonomic level, twelve genera, well-known to be associated with algae (with the exception for Colwellia), were consistently found on all three A. nosodum samples. Even more interesting, 9 of the 11 above mentioned genera containing polysaccharolytic isolates were predominant in this common core. The cultivable fraction of

  5. The cultivable surface microbiota of the brown alga Ascophyllum nodosum is enriched in macroalgal-polysaccharide-degrading bacteria

    Directory of Open Access Journals (Sweden)

    Marjolaine eMartin

    2015-12-01

    Full Text Available Bacteria degrading algal polysaccharides are key players in the global carbon cycle and in algal biomass recycling. Yet the water column, which has been studied largely by metagenomic approaches, is poor in such bacteria and their algal-polysaccharide-degrading enzymes. Even more surprisingly, the few published studies on seaweed-associated microbiomes have revealed low abundances of such bacteria and their specific enzymes. However, as macroalgal cell-wall polysaccharides do not accumulate in nature, these bacteria and their unique polysaccharidases must not be that uncommon. We, therefore, looked at the polysaccharide-degrading activity of the cultivable bacterial subpopulation associated with Ascophyllum nodosum. From A. nodosum triplicates, 324 bacteria were isolated and taxonomically identified. Out of these isolates, 78 (~25% were found to act on at least one tested algal polysaccharide (agar, ι- or κ-carrageenan, or alginate. The isolates active on algal-polysaccharides belong to 11 genera: Cellulophaga, Maribacter, Algibacter, and Zobellia in the class Flavobacteriia (41 and Pseudoalteromonas, Vibrio, Cobetia, Shewanella, Colwellia, Marinomonas, and Paraglaceciola in the class Gammaproteobacteria (37. A major part represents likely novel species. Different proportions of bacterial phyla and classes were observed between the isolated cultivable subpopulation and the total microbial community previously identified on other brown algae. Here, Bacteroidetes and Gammaproteobacteria were found to be the most abundant and some phyla (as Planctomycetes and Cyanobacteria frequently encountered on brown algae weren’t identified. At a lower taxonomic level, twelve genera, well-known to be associated with algae (with the exception for Colwellia, were consistently found on all three A. nosodum samples. Even more interesting, 9 of the 11 above mentioned genera containing polysaccharolytic isolates were predominant in this common core. The

  6. Characterization of marine bacteria and the activity of their enzyme systems involved in degradation of the algal storage glucan laminarin

    NARCIS (Netherlands)

    Alderkamp, A-C.; van Rijssel, M.; Bolhuis, H.

    2007-01-01

    The algal storage glucan laminarin is one of the most abundant carbon sources for marine prokaryotes. Its degradation was investigated in bacteria isolated during and after a spring phytoplankton bloom in the coastal North Sea. On average, 13% of prokaryotes detected by epifluorescence counts were a

  7. Paenibacillus tundrae sp. nov. and Paenibacillus xylanexedens sp. nov., Psychrotolerant, Xylan-Degrading, Bacteria from Alaskan Tundra

    Science.gov (United States)

    Psychrotolerant, xylan-degrading, strains of bacteria were isolated from soil beneath moist non-acidic and acidic tundra in northern Alaska. Phylogenetic analysis based on 16S rRNA gene sequences revealed that each strain belonged to the genus Paenibacillus. The highest levels of 16S rRNA gene sim...

  8. Molecular Identifi cation of Phenol-Degrading and Biofi lm-Forming Bacteria from Wastewater and Peat Soil

    Directory of Open Access Journals (Sweden)

    Arifah Khusnuryani

    2016-02-01

    Full Text Available Phenol is hazardous aromatic pollutant which needs to be treated to reduce its hazardous effects.Bioremediation using bacteria which can form biofi lm offer an alternative wastewater treatment that is cheaperand environmentally safe. Eighteen strains of phenol-degrading and biofi lm-forming bacteria were isolatedfrom peat soil, also hospital and textile wastewater. Screening for phenol degradation ability of isolates wereperformed using Folin-ciocalteau reagent, while for biofi lm formation ability were performed using microtiterplate and crystal violet dye. Based on the ability to degrade phenol and to form biofi lm, four isolates (HP3,DOK135, DL120, andATA6 were choosen as phenol-degrading bacteria as well as biofi lm-forming bacteria.Based on phenotypic and genotypic characterization, isolate HP3 was highly similar to Rhodococcus equi strainDSM20307T, while DOK135 was highly similar to Enterobacter mori strain R18-2.The results also suggested thatDL120 and ATA6 could be classifi ed to the genus of Micrococcus and Bacillus respectively

  9. Optimisation of Environmental Factors on Oil Degrading Bacteria Isolated from Coastal Water and Sediments in Sri Lanka

    Directory of Open Access Journals (Sweden)

    GY Liyanage

    2015-12-01

    Full Text Available Better understanding of the mechanisms of hydrocarbon degrading microorganisms and effect of some environmental factors is critical for the optimisation of the bioremediation processes. Temperature, pH, nitrate and phosphate are the major factors that influence there mediation process of bacterium. In the present study, optimisations some selected physico-chemical parameters (temperature, pH, nitrate and phosphate were carried out on Bacillus cereus, Enterobacter sp. and Enterobacter ludwigii which were previously isolated as potential oil degraders. The bacteria showed maximum degradation of crude oil at 33o C where the desirable pH was 8.6 for all the isolates except E. ludwigii (pH 5.4. A significant degradation (p < 0.05 of oil was detected by B. cereus (80% to 98%, Enterobacter sp. (73% to 90% and E. ludwigii (70% to 83% respectively with increasing of nitrate concentration from 0.1 to 2.5 ppm. Significant degradation of oil was not detected in the control and when bacteria were enriched with phosphate. Results of this study revealed that the bacterial remediation of oil is governed by nutritional status with special emphasis of nitrate enrichment in the environment. Thus, the results revealed that bacteria could be a useful tool to remove oil from the contaminated environment as eco-friendly, low cost application.

  10. Cultivation-dependent and cultivation-independent characterisation of hydrocarbon-degrading bacteria in Guaymas Basin sediments

    Directory of Open Access Journals (Sweden)

    Tony eGutierrez

    2015-07-01

    Full Text Available Marine hydrocarbon-degrading bacteria perform a fundamental role in the biodegradation of crude oil and its petrochemical derivatives in coastal and open ocean environments. However, there is a paucity of knowledge on the diversity and function of these organisms in deep-sea sediment. Here we used stable-isotope probing (SIP, a valuable tool to link the phylogeny and function of targeted microbial groups, to investigate polycyclic aromatic hydrocarbon (PAH-degrading bacteria under aerobic conditions in sediments from Guaymas Basin with uniformly labeled [13C]phenanthrene. The dominant sequences in clone libraries constructed from 13C-enriched bacterial DNA (from phenanthrene enrichments were identified to belong to the genus Cycloclasticus. We used quantitative PCR primers targeting the 16S rRNA gene of the SIP-identified Cycloclasticus to determine their abundance in sediment incubations amended with unlabeled phenanthrene and showed substantial increases in gene abundance during the experiments. We also isolated a strain, BG-2, representing the SIP-identified Cycloclasticus sequence (99.9% 16S rRNA gene sequence identity, and used this strain to provide direct evidence of phenanthrene degradation and mineralization. In addition, we isolated Halomonas, Thalassospira and Lutibacterium spp. with demonstrable phenanthrene-degrading capacity from Guaymas Basin sediment. This study demonstrates the value of coupling SIP with cultivation methods to identify and expand on the known diversity of PAH-degrading bacteria in the deep-sea.

  11. Cultivation-dependent and cultivation-independent characterization of hydrocarbon-degrading bacteria in Guaymas Basin sediments.

    Science.gov (United States)

    Gutierrez, Tony; Biddle, Jennifer F; Teske, Andreas; Aitken, Michael D

    2015-01-01

    Marine hydrocarbon-degrading bacteria perform a fundamental role in the biodegradation of crude oil and its petrochemical derivatives in coastal and open ocean environments. However, there is a paucity of knowledge on the diversity and function of these organisms in deep-sea sediment. Here we used stable-isotope probing (SIP), a valuable tool to link the phylogeny and function of targeted microbial groups, to investigate polycyclic aromatic hydrocarbon (PAH)-degrading bacteria under aerobic conditions in sediments from Guaymas Basin with uniformly labeled [(13)C]-phenanthrene (PHE). The dominant sequences in clone libraries constructed from (13)C-enriched bacterial DNA (from PHE enrichments) were identified to belong to the genus Cycloclasticus. We used quantitative PCR primers targeting the 16S rRNA gene of the SIP-identified Cycloclasticus to determine their abundance in sediment incubations amended with unlabeled PHE and showed substantial increases in gene abundance during the experiments. We also isolated a strain, BG-2, representing the SIP-identified Cycloclasticus sequence (99.9% 16S rRNA gene sequence identity), and used this strain to provide direct evidence of PHE degradation and mineralization. In addition, we isolated Halomonas, Thalassospira, and Lutibacterium sp. with demonstrable PHE-degrading capacity from Guaymas Basin sediment. This study demonstrates the value of coupling SIP with cultivation methods to identify and expand on the known diversity of PAH-degrading bacteria in the deep-sea. PMID:26217326

  12. Selection of oleuropein-degrading lactic acid bacteria strains isolated from fermenting Moroccan green olives

    Directory of Open Access Journals (Sweden)

    Ghabbour, N.

    2011-03-01

    Full Text Available A total of 177 strains of lactic acid bacteria (LAB were isolated from early-stage Moroccan Picholine green olive fermentation, including Lactobacillus plantarum (44.63%, Lactobacillus pentosus (25.99%, Lactobacillus brevis (9.61% and Pediococcus pentosaceus (19.77%. All the isolates were screened for their tolerance to olive leaf extract and oleuropein. Most of the isolates (85.3% were found able to degrade oleuropein, when evaluated by either oleuropein or 5-Bromo- 4-chloro-3-indolyl β-D-glucuronide (X-Gluc as substrates. The biodegradation capacity of the selected strains of each species was confirmed by HPLC analysis.

    Un total de 177 cepas de bacterias ácido lácticas (LAB fueron aisladas en las primeras etapas de la fermentación de aceitunas verdes marroquíes Picholine, incluyendo Lactobacillus plantarum (44.63%, Lactobacillus pentosus (25.99%, Lactobacillus brevis (9.61% y Pediococcus pentosaceus (19.77%. Todos los aislados fueron evaluados mediante su tolerancia a extractos de hojas de olivo y oleuropeína. La mayoría de los aislados (85,3% degradaron oleuropeína, cuando fueron evaluados usando oleuropeína o 5-Bromo-4-cloro- 3-indolil β-D-glucuronido (X-Gluc como sustrato. La capacidad de biodegradación de las cepas seleccionadas para cada especie fue confirmada mediante análisis por HPLC.

  13. Dynamics of Phenol Degrading-Iron ReducingBacteria{1mm in Intensive Rice Cropping System

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Field and greenhouse experiments were conducted to investigate theeffects of cropping season, nitrogen fertilizer input and aeratedfallow on the dynamics of phenol degrading-iron reducingbacteria (PD-IRB) in tropical irrigated rice ({ Oryza sativa L.)systems. The PD-IRB population density was monitored at different stagesof rice growth in two cropping seasons (dry and early wet) in acontinuous annual triple rice cropping system under irrigated condition.In this system, the high nitrogen input (195 and 135 kg N ha-1 indry and wet seasons, respectively) plots and control plots receiving noN fertilizer were compared to investigate the effect of nitrogen rate onpopulation size. The phenol degrading-iron reducing bacteria (PD-IRB)were abundant in soils under cropping systems of tropical irrigatedrice. However, density of the bacterial populations varied with ricegrowth stages. Cropping seasons, rhizosphere, and aerated fallow couldaffect the dynamics of PD-IRB. In the field trial, viable counts ofPD-IRB in the topsoil layer (15 cm) ranged between 102 and 108cells per gram of dry soil. A steep increase in viable counts during thesecond half of the cropping season suggested that the population densityof PD-IRB increased at advanced crop-growth stages. Population growth ofPD-IRB was accelerated during the dry season compared to the wet season.In the greenhouse experiment, the adjacent aerated fallow revealed 1-2orders of magnitude higher in most probable number (MPN) of PD-IRB thanthe wet fallow treated plots. As a prominent group of Fe reducingbacteria, PD-IRB predominated in the rhizosphere of rice, since maximumMPN of PD-IRB (2.62108 g-1 soil) was found in rhizospheresoil. Mineral N fertilizer rates showed no significant effect on PD-IRBpopulation density.

  14. Isolation and Screening of Diesel-Degrading Bacteria from the Diesel Contaminated Seawater at Kenjeran Beach, Surabaya

    Directory of Open Access Journals (Sweden)

    Pratiwi Putri Pranowo

    2016-07-01

    Full Text Available Samples of contaminated seawater by diesel were taken at Kenjeran Beach Surabaya using aseptic technique. Isolation was conducted using serial dilution and spread method on nutrient agar (NA media. The all bacteria colony were devided in to group based on with morphological characterization and gram staining. After that, those bacterial colonies were tested individually in NA media containing different concentration of diesel (2, 4, 6, 8, and 10% for up to 7 days at 30°C. The results showed that eight bacterial strains were isolated from diesel contaminated seawater in Kenjeran Beach Surabaya. Screening on diesel showed that all the isolation bacteria were capable of degrading diesel and bacteria with code of B and E haves highly percentage growth in compared to other bacterial isolation. In conclusion, bacteria with code of B and E have potential to be used in diesel bioremediation in contaminated seawater.

  15. Comparison of the degradation of 14C-labeled DHP and corn stalk lignins by micro- and macrofungi and bacteria

    International Nuclear Information System (INIS)

    To what extent and by which mode microfungi and bacteria from soil are able to degrade lignin have been investigated and their activity compared with those of white and brown rot Basidiomycetes. The experiments were made by means of specifically 14C-labeled DHPs prepared by polymerization of correspondingly labeled coniferyl alcohol. Also, a corn stalk material was used which was specifically labeled in the lignin part. This material was prepared by infusion of specifically labeled cinnamic acid compounds into growing maize plants. The potential of the organisms to degrade several specifically labeled phenols was determined and compared. White and brown rot fungi, as well as several microscopic fungi, were able to degrade phenolcarboxylic and cinnamic acids and even some phenolic compounds with completely alkylated phenolic hydroxl groups. They could also introduce hydroxl groups into benzoic and pi-hydroxybenzoic acids before ring cleavage. As compared to brown rot, the white rot fungi released higher amounts of CO2 from the aromatic and side chain carbons of DHP and plant lignins. Some brown rot fungi, however, had similar capacities in degrading DHP lignin as white rot fungi. They especially released more CO2 from methoxyl groups. This release was dependent upon the added carbohydrate source and could be either repressed or enhanced. Several bacteria, especially Nocardia spp. and Pseudomonas spp., were tested for their potential to degrade the labeled lignins or phenols. Most of these bacteria did not appreciably degrade lignins, although they were highly active in the metabolization of phenols. Some Nocardia spp., however, were found to have a noteworthy capacity in the degradation of lignins and phenols. Preliminary studies of the potentials of the organisms to attack labeled lignin sulfonates either in liquid or soil cultures are presented. (Refs. 100)

  16. Inoculation of tannin-degrading bacteria into novel hosts increases performance on tannin-rich diets.

    Science.gov (United States)

    Kohl, Kevin D; Stengel, Ashley; Dearing, M Denise

    2016-06-01

    It has been hypothesized that herbivores host tannin-degrading bacteria (TDB) to overcome the toxic challenges posed by plant tannins. While TDB have been isolated from the guts of numerous mammals, their functional significance to their hosts has never been explicitly tested. We introduced TDB into lab rats, which do not host TDB, and measured host performance on tannin-rich diets. We first isolated three species of TDB, Escherichia coli, Bacillus subtilis and Enterococcus faecalis, from the guts of the desert woodrat (Neotoma lepida), which regularly feeds on tannin-rich plants. Then, we inoculated isolated TDB, as well as full woodrat microbial communities into laboratory rats. A control group was inoculated with sterilized woodrat faeces. Recipient lab rats were fed increasing concentrations of tannic acid, and we monitored tannic acid intake, body mass and liver damage as measured by serum alanine aminotransferase activity. Lab rats given TDB as isolates or full communities exhibited increased tannic acid intake, higher maintenance of body mass and lower indicators of liver damage compared with control animals. These differences were maintained when the trial was repeated after 6 weeks of feeding on tannin-free diets. Our results are the first to demonstrate that TDB significantly increase host performance on tannin-rich diets. PMID:25753857

  17. Immobilization of degradative bacteria in polyurethane-based foams: embedding efficiency and effect on bacterial activity

    Energy Technology Data Exchange (ETDEWEB)

    Wilde, E.W. [Westinghouse Savannah River Company, Aiken, SC (United States); Radway, J.C.; Hazen, T.C.; Hermann, P. [Matrix R and D Corp., Dover, NH (United States)

    1996-09-03

    The immobilization of TCE-degrading bacterium Burkholderia cepacia was evaluated using hydrophilic polyurethane foam. The influence of several foam formulation parameters upon cell retention was examined. Surfactant type was a major determinant of retention, with a lecithin- based compound retaining more cells than pluronic or silicone based surfactants. Excessive amounts of surfactant led to increased washout of bacteria. Increasing the biomass concentration from 4.8% to 10.5% caused fewer cells to be washed out. Embedding at reduced temperature did not significantly affect retention, while the use of a silane binding agent gave inconsistent results. The optimal formulation retained all but 0.2% of total embedded cells during passage of 2 liters of water through columns containing 2 g of foam. All foam formulations tested reduced the culturability of embedded cells by several orders of magnitude. However, O{sub 2} and CO{sub 2} evolution rates of embedded cells were never less than 50% of unembedded cells. Nutrient amendments stimulated an increase in cell volume and ribosomal activity as indicated by hybridization studies using fluorescently labeled ribosomal probes. these results indicated that, although immobilized cells were nonculturable, they were metabolically active and thus could be used for biodegradation of toxic compounds.

  18. Isolation, fingerprinting and genetic identification of indigenous PAHs degrading bacteria from oil-polluted soils.

    Science.gov (United States)

    Alrumman, Sulaiman A; Hesham, Abd El-Latif; Alamri, Saad A

    2016-01-01

    In the present study, thirty five bacterial isolates were obtained from hydrocarbon-contaminated soil samples using an enrichment method. These isolates were tested to grow on mineral salt medium containing anthracene or phenanthrene as sole carbon source. Only five isolates showed the ability to degrade these compounds. RAPD-PCR fingerprinting was carried out for the five isolates, and the DNA patterns revealed that there was no similarity among the examined bacteria whenever the RFLP using four restriction enzymes HaeIII, Msp1, Hinf1 and Taq1 failed to differentiate among them. Five bacterial isolates were grown in high concentration of anthracene and phenanthrene (4% w/v). Two bacterial isolates were selected due to their high ability to grow in the presence of high concentrations of anthracene and phenanthrene. The isolates were identified as Bacillus flexus and Ochrobactrum anthropi, based on DNA sequencing of amplified 16S rRNA gene and phylogenetic analysis. Finally, the ability of these bacterial strains to tolerate and remove different PAHs looked promising for application in bioremediation technologies. PMID:26930863

  19. Isolation and Identification of Pyrene-degrading Bacteria from Soils around Landfills in Shiraz and Their Growth Kinetic Assay

    Directory of Open Access Journals (Sweden)

    Farshid Kafilzadeh

    2011-12-01

    Full Text Available Background & Objectives: Pyrene is a kind of carcinogen hydrocarbon in environment and one of the top 129 pollutants as ranked by the U.S.Environmental Pretection Agency (USEPA. Today's commodious method that is considered by many researchers is the use of microorganisms to degrade these compounds from the environment. The goal of this research is separation and identification of the indigenous bacterias which are effective in decomposition of Pyrene hydrocarbon from soils around Shiraz Landfills. Isolated bacteria growth in the presence of different concentrations of the aforesaid organic pollutant was evaluated. Materials & Methods: Taking samples from Landfills were done after transportation them to the laboratory. The numbers of the bacterias were counted in a medium including Pyrene 0.6 g/l and in another medium without Pyrene. The isolated bacterias were separated by the enriched medium of hydrocarbon Pyrene and were recognized accordance with standards methods (specialty of colony, microscopic properties, fermentation of sugars and biochemical test.The kinetic growth of the separated bacterias was evaluated every 12 hours during 7 successive days. Results: It was reported that the numbers of the bacterias in the medium without Pyrene is more than those with Pyrene (cfu/g. The separated bacterias were included Bacillus spp., Pseudomonas spp., Micrococcus spp., Mycobacterium spp. These four isolated bacterias showed the best growth with Pyrene 0.6 g/l during third and fourth days. Conclusion: The separating bacterias, effecting in decomposition of PAH, make this possibility that the modern methods with more efficiency to be created for removing the carcinogen organic polluters from the environment. Moreover, the separated bacterias (relating to this research can be applied to develop the microbial population in the areas that polluted with Pyrene.

  20. Screening of SDS-degrading Bacteria from Carwash Wastewater and the Study of the Alkylsulfatase Enzyme Activity

    Directory of Open Access Journals (Sweden)

    Razieh Shahbazi

    2013-06-01

    Full Text Available Background and Objectives: Sodium dodecyl sulfate (SDS is one of the main surfactant components in detergents and cosmetics, used in high amounts as a detergent in products such as shampoos, car wash soap and toothpaste. Therefore, its bioremediation by suitable microorganisms is important. Alkylsulfatase is an enzyme that hydrolyses sulfate -ester bonds to give inorganic sulfate and alcohol. The purpose of this study was to isolate SDS–degrading bacteria from Tehran city car wash wastewater, study bacterial alkylsulfatase enzyme activity and identify the alkylsulfatase enzyme coding gene.Materials and Methods: Screening of SDS-degrading bacteria was carried out on basal salt medium containing SDS as the sole source of carbon. Amount of SDS degraded was assayed by methylene blue active substance (MBAS.Results and Conclusion: Identification of the sdsA gene was carried by PCR and subsequent sequencing of the 16S rDNA gene and biochemical tests identified Pseudomonas aeruginosa. This bacterium is able to degrade 84% of SDS after four days incubation. Bacteria isolated from car wash wastewater were shown to carry the sdsA gene (670bp and the alkylsulfatase enzyme specific activity expressed from this gene was determined to be 24.3 unit/mg . The results presented in this research indicate that Pseudomonas aeruginosa is a suitable candidate for SDS biodegradation.

  1. Study the Optimal Condition of Fenpropathrin Degradation by Ochrobactrum Anthropi Based on Bacteria Microscopic Image Detection Method

    Directory of Open Access Journals (Sweden)

    Ning Yang

    2013-06-01

    Full Text Available In order to study fenpropathrin degrading more accurate than turbidimetry. We proposed Live Bacteria Detection method (LBD based on high precision microscopic image processing and Support Vector Machine (SVM identification to analyze the optimal condition of fenpropathrin degradation by Ochrobactrum anthropic. The optimal fenpropathrin degradation condition measured by LBD is pH 7.0 and 34°C. On the other hand, the optimal condition measured by turbidimetry is pH 8.0 and 35°C. The correlation coefficient of fenpropathrin concentration and Ochrobactrum anthropic concentration measured by both methods in this study indicate that Ochrobactrum anthropic concentration measured by LBD shows better decreasing linear relationship with fenpropathrin degradation concentration than turbidimetry.

  2. Isolation of Oxamyl-degrading Bacteria and Identification of cehA as a Novel Oxamyl Hydrolase Gene

    Science.gov (United States)

    Rousidou, Konstantina; Chanika, Eleni; Georgiadou, Dafne; Soueref, Eftychia; Katsarou, Demetra; Kolovos, Panagiotis; Ntougias, Spyridon; Tourna, Maria; Tzortzakakis, Emmanuel A.; Karpouzas, Dimitrios G.

    2016-01-01

    Microbial degradation is the main process controlling the environmental dissipation of the nematicide oxamyl. Despite that, little is known regarding the microorganisms involved in its biotransformation. We report the isolation of four oxamyl-degrading bacterial strains from an agricultural soil exhibiting enhanced biodegradation of oxamyl. Multilocus sequence analysis (MLSA) assigned the isolated bacteria to different subgroups of the genus Pseudomonas. The isolated bacteria hydrolyzed oxamyl to oxamyl oxime, which was not further transformed, and utilized methylamine as a C and N source. This was further supported by the detection of methylamine dehydrogenase in three of the four isolates. All oxamyl-degrading strains carried a gene highly homologous to a carbamate-hydrolase gene cehA previously identified in carbaryl- and carbofuran-degrading strains. Transcription analysis verified its direct involvement in the hydrolysis of oxamyl. Selected isolates exhibited relaxed degrading specificity and transformed all carbamates tested including the oximino carbamates aldicarb and methomyl (structurally related to oxamyl) and the aryl-methyl carbamates carbofuran and carbaryl which share with oxamyl only the carbamate moiety. PMID:27199945

  3. Identification of a novel enzymatic activity from lactic acid bacteria able to degrade biogenic amines in wine.

    Science.gov (United States)

    Callejón, S; Sendra, R; Ferrer, S; Pardo, I

    2014-01-01

    The main objectives of this study were the search for enzymatic activities responsible for biogenic amine (BA) degradation in lactic acid bacteria (LAB) strains isolated from wine, their identification, and the evaluation of their applicability for reducing BAs in wine. Fifty-three percent of the 76 LAB cell extracts showed activity against a mixture of histamine, tyramine, and putrescine when analyzed in-gel. The quantification of the degrading ability for each individual amine was tested in a synthetic medium and wine. Most of the bacteria analyzed were able to degrade the three amines in both conditions. The highest percentages of degradation in wine were those of putrescine: up to 41% diminution in 1 week. Enzymes responsible for amine degradation were isolated and purified from Lactobacillus plantarum J16 and Pediococcus acidilactici CECT 5930 strains and were identified as multicopper oxidases. This is the first report of an efficient BA reduction in wine by LAB. Furthermore, the identity of the enzymes involved has been revealed. PMID:23515835

  4. Isolation of oxamyl-degrading bacteria and identification of cehA as a novel oxamyl hydrolase gene

    Directory of Open Access Journals (Sweden)

    Konstantina eRousidou

    2016-04-01

    Full Text Available Microbial degradation is the main process controlling the environmental dissipation of the nematicide oxamyl. Despite that, little is known regarding the microorganisms involved in its biotransformation. We report the isolation of four oxamyl-degrading bacterial strains from an agricultural soil exhibiting enhanced biodegradation of oxamyl. Multilocus sequence analysis (MLSA assigned the isolated bacteria to different subgroups of the genus Pseudomonas. The isolated bacteria hydrolyzed oxamyl to oxamyl oxime, which was not further transformed, and utilized methylamine as a C and N source. This was further supported by the detection of methylamine dehydrogenase in three of the four isolates. All oxamyl-degrading strains carried a gene highly homologous to a carbamate-hydrolase gene cehA previously identified in carbaryl- and carbofuran-degrading strains. Transcription analysis verified its direct involvement in the hydrolysis of oxamyl. Selected isolates exhibited relaxed degrading specificity and transformed all carbamates tested including the oximino carbamates aldicarb and methomyl (structurally related to oxamyl and the aryl-methyl carbamates carbofuran and carbaryl which share with oxamyl only the carbamate moiety

  5. Screening of phenol-degradation bacteria and study of its degradation characteristics%苯酚降解菌筛选及降解特性研究

    Institute of Scientific and Technical Information of China (English)

    李鲜珠; 沈玉冰; 马溪平; 王闻烨; 李万龙; 张宏亮; 徐成斌

    2015-01-01

    According to the characteristics that there are high content of bio-refractory organic matters in the coking wastewater and the changes of water quality and water quantity during actual production are great, the authors of this paper mainly studied the treatment of wastewater containing phenol by high efficient strains.four highly efficient degradation bacteria strains which take phenol as the sole carbon source were obtained by means of domestication, isolation and screening to the activated sludge in the aeration tank, a biological treatment device, of the water treatment plant in a coking factory.Those four highly efficient degradation bacteria strains were identified and its degradation characteristics were studied.The results show that the strain h32a2, b31B, h31A and b41a are identified as Pseudomonas sp;Phenol content was measured by brominating volumetric method.The best condition of strain degradation was determined as follows: the degradation temperature was 32℃, the pH value is 7.5 , the strain incubation time was 16h, the inoculation density was 1%, and the maximum phenol degradation rate of the strain h32 a2 reached 90.55%. We can know that the degradation effect of combined four highly efficient degradation bacteria strains is the best from the degradation characteristics of single and combined strain.The treatment of wastewater containing phenol by mixed high efficient phenol-degradation bacteria was feasible.%针对焦化废水生物难降解有机物含量高、实际生产过程中的水质和水量变化大的特点,开展了高效菌株处理含酚废水的试验研究。从某焦化厂水处理车间生物处理装置曝气池活性污泥中驯化、分离和筛选得到4株以苯酚为唯一碳源的高效降解菌,并对其进行鉴定及降解特性研究。结果表明:初步鉴定h32a2、b31B、h31A和b41a为假单胞菌属( Pseudomonas sp.);通过溴化容量法测定苯酚含量,确定了菌株的

  6. Inhibition of ethanol-producing yeast and bacteria by degradation products produced during pre-treatment of biomass

    DEFF Research Database (Denmark)

    Klinke, H.B.; Thomsen, A.B.; Ahring, Birgitte Kiær

    2004-01-01

    An overview of the different inhibitors formed by pre-treatment of lignocellulosic materials and their inhibition of ethanol production in yeast and bacteria is given. Different high temperature physical pre-treatment methods are available to render the carbohydrates in lignocellulose accessible...... for ethanol fermentation. The resulting hydrolyzsates contain substances inhibitory to fermentation-depending on both the raw material (biomass) and the pre-treatment applied. An overview of the inhibitory effect on ethanol production by yeast and bacteria is presented. Apart from furans formed by sugar...... degradation, phenol monomers from lignin degradation are important co-factors in hydrolysate inhibition, and inhibitory effects of these aromatic compounds on different ethanol producing microorganisms is reviewed. The furans and phenols generally inhibited growth and ethanol production rate (Q...

  7. Degradation of methyl bromide by methanotrophic bacteria in cell suspensions and soils

    Science.gov (United States)

    Oremland, R.S.; Miller, L.G.; Culbertson, C.W.; Connell, T.L.; Jahnke, L.

    1994-01-01

    Cell suspensions of Methylococcus capsulatus mineralized methyl bromide (MeBr), as evidenced by its removal from the gas phase, the quantitative recovery of Br- in the spent medium, and the production of 14CO2 from [14C]MeBr. Methyl fluoride (MeF) inhibited oxidation of methane as well as that of [14C]MeBr. The rate of MeBr consumption by cells varied inversely with the supply of methane, which suggested a competitive relationship between these two substrates. However, MeBr did not support growth of the methanotroph. In soils exposed to high levels (10,000 ppm) of MeBr, methane oxidation was completely inhibited. At this concentration, MeBr removal rates were equivalent in killed and live controls, which indicated a chemical rather than biological removal reaction. At lower concentrations (1,000 ppm) of MeBr, methanotrophs were active and MeBr consumption rates were 10-fold higher in live controls than in killed controls. Soils exposed to trace levels (10 ppm) of MeBr demonstrated complete consumption within 5 h of incubation, while controls inhibited with MeF or incubated without O2 had 50% lower removal rates. Aerobic soils oxidized [14C]MeBr to 14CO2, and MeF inhibited oxidation by 72%. Field experiments demonstrated slightly lower MeBr removal rates in chambers containing MeF than in chambers lacking MeF. Collectively, these results show that soil methanotrophic bacteria, as well as other microbes, can degrade MeBr present in the environment.

  8. Screening and Optimization of Bio surfactant Production by the Hydrocarbon-Degrading Bacteria

    International Nuclear Information System (INIS)

    Bio surfactants are amphiphilic compounds produced by microorganisms as secondary metabolite. The unique properties of bio surfactants make them possible to replace or to be added to synthetic surfactants which are mainly used in food, cosmetics and pharmaceutical industries and in environmental applications. In this study twenty hydrocarbon-degrading bacteria were screened for bio surfactant production. All of the bacterial isolates were grown in mineral salt medium (MSM) with addition of 1 % (v/v) Tapis crude oil as carbon source. The presence of bio surfactant was determined by the drop-collapse test, microplate analysis, oil spreading technique, emulsification index (%EI24) and surface tension measurement. Only one isolate, Pseudomonas aeruginosa UKMP14T, was found to be positive for all the qualitative tests and reducing the surface tension of the medium to 49.5 dynes/ with emulsification index of 25.29 %. This isolate produced bio surfactant optimally at pH 9.0 and incubation temperature of 37 degree Celsius. Furthermore, P. aeruginosa UKMP14T when grown in MSM with addition of 1 % (v/v) glycerol and 1.3 g/ L ammonium sulphate with C/N ratio 14:1 produced bio surfactant with percentage of surface tension reduction at 55 % or 30.6 dynes/ cm with %EI24 of 43 %. This percentage of surface tension reduction represents an increasing reduction in surface tension of medium by 39 % over the value before optimization. This study showed that P. aeruginosa UKMP14T has the ability to biodegrade hydrocarbon and concurrently produce bio surfactant. (author)

  9. Pesticide Degrading Bacteria in Aquatic Environment: Bioprospecting and Evaluation of Biotechnological Potential

    Directory of Open Access Journals (Sweden)

    Daniel Rodrigues dos Santos

    2016-07-01

    Full Text Available Pesticides play an important role in the increase of productivity in agro-industry and the extensive use of these substances cause environmental, economic and social damage in time. Microbial activity is an essential part in the dynamics and the destination of pesticides in the environment. This research focuses in prospecting and characterizing bacterial strains which are potentially able to degrade/tolerate Atrazine, Chlorpyrifos, Methyl parathion and Picloram. Bacteria were isolated from water samples collected according to the degree of salinity along the Pacoti River's estuary (Ceara, located in the semi-arid region of northeastern Brazil. A total of 49 bacterial strains were isolated, all of which tolerated/ downgraded concentrations up to 200mg/L of picloram, atrazine and methyl parathion. Tested in pesticide mixtures, the percentage and tolerance level showed that 73% grew in concentrations up to 200mg/L, 17,4% tolerated/ downgraded up to 150ml/L and the remainder only grew in concentrations under 100ml/L. The strains which had the best performance against pesticides, by points, were P1 (13Db e 14D; P2 (10E; P3 (2M, 9M, 10M, 12Mb, 14M, 17M 18Mp 19M e 20M. A high percentage of isolates (67% expressed luminescence when exposed to the pesticides atrazine and methyl parathion in concentrations between 150 and 200ml/L. DOI: http://dx.doi.org/10.17807/orbital.v8i4.748

  10. A PRELIMINARY STUDY AND FIRST REPORT ON CAFFEINE DEGRADING BACTERIA ISOLATED FROM THE SOILS OF CHITTOOR AND VELLORE

    OpenAIRE

    Sharan Siddharth; Joseph Renuka Elizabeth; A Abhiroop Anja; Nayak Rounaq S; Gambhir Vrinda; Mishra Bishwambhar; Vuppu Suneetha

    2012-01-01

    An attempt on basic study of the caffeine degrading organism and screening of potential ‘caffeinase’ producing bacteria has been studied and reported. Caffeine is present in soft drinks, coffee plants, tea leaves, and kola nuts and is used extensively in human consumption. Various health and environmental demerits makes it significant to reduce the levels of caffeine into a much less harmful compound, which can be done biologically using specific microorganisms. The enzyme responsible for caf...

  11. Synergism in Degradation and Utilization of Intact Forage Cellulose, Hemicellulose, and Pectin by Three Pure Cultures of Ruminal Bacteria

    OpenAIRE

    Osborne, J. M.; Dehority, B. A.

    1989-01-01

    Pure cultures of ruminal bacteria characterized as using only a single forage polysaccharide (Fibrobacter succinogenes A3c, cellulolytic; Bacteroides ruminicola H2b, hemicellulolytic; Lachnospira multiparus D15d, pectinolytic) were inoculated separately and in all possible combinations into fermentation tubes containing orchard grass as the sole substrate. Fermentations were run to completion, and then cultures were analyzed for digestion of cellulose plus degradation and utilization of hemic...

  12. Effect of communities of ammonia-oxidizing bacteria on degradation of 17-alpha-ethynylestradiol by nitrifying activated sludge

    Energy Technology Data Exchange (ETDEWEB)

    Limpiyakorn, T.; Sermwaraphan, P.; Kurisu, F.

    2009-07-01

    An endocrine disrupting compound, 17-alpha-ethynylestradiol (EE2), is a synthetic estrogen used as a key ingredient in oral contraceptives pill. this persistent organic pollutant, no biodegradable by most microorganisms, is discharged via municipal waste streams to natural receiving waters. Recently, it was found that ammonia-oxidizing bacteria (AOB) in nitrifying activated sludge (NAS) enriched with high ammonium loads can degrade EE2 via co-metabolism during ammonia oxidation. (Author)

  13. Self-bioremediation of cork-processing wastewaters by (chloro)phenol-degrading bacteria immobilised onto residual cork particles.

    Science.gov (United States)

    del Castillo, I; Hernández, P; Lafuente, A; Rodríguez-Llorente, I D; Caviedes, M A; Pajuelo, E

    2012-04-15

    Cork manufacturing is a traditional industry in Southern Europe, being the main application of this natural product in wine stoppers and insulation. Cork processing begins at boiling the raw material. As a consequence, great volumes of dark wastewaters, with elevated concentrations of chlorophenols, are generated, which must be depurated through costly physicochemical procedures before discarding them into public water courses. This work explores the potential of bacteria, isolated from cork-boiling waters storage ponds, in bioremediation of the same effluent. The bacterial population present in cork-processing wastewaters was analysed by DGGE; low bacterial biodiversity was found. Aerobic bacteria were isolated and investigated for their tolerance against phenol and two chlorophenols. The most tolerant strains were identified by sequencing 16S rDNA. The phenol-degrading capacity was investigated by determining enzyme activities of the phenol-degrading pathway. Moreover, the capacity to form biofilms was analysed in a microtitre plate assay. Finally, the capacity to form biofilms onto the surface of residual small cork particles was evaluated by acridine staining followed by epifluorescence microscopy and by SEM. A low-cost bioremediation system, using phenol-degrading bacteria immobilised onto residual cork particles (a by-product of the industry) is proposed for the remediation of this industrial effluent (self-bioremediation).

  14. Self-bioremediation of cork-processing wastewaters by (chloro)phenol-degrading bacteria immobilised onto residual cork particles.

    Science.gov (United States)

    del Castillo, I; Hernández, P; Lafuente, A; Rodríguez-Llorente, I D; Caviedes, M A; Pajuelo, E

    2012-04-15

    Cork manufacturing is a traditional industry in Southern Europe, being the main application of this natural product in wine stoppers and insulation. Cork processing begins at boiling the raw material. As a consequence, great volumes of dark wastewaters, with elevated concentrations of chlorophenols, are generated, which must be depurated through costly physicochemical procedures before discarding them into public water courses. This work explores the potential of bacteria, isolated from cork-boiling waters storage ponds, in bioremediation of the same effluent. The bacterial population present in cork-processing wastewaters was analysed by DGGE; low bacterial biodiversity was found. Aerobic bacteria were isolated and investigated for their tolerance against phenol and two chlorophenols. The most tolerant strains were identified by sequencing 16S rDNA. The phenol-degrading capacity was investigated by determining enzyme activities of the phenol-degrading pathway. Moreover, the capacity to form biofilms was analysed in a microtitre plate assay. Finally, the capacity to form biofilms onto the surface of residual small cork particles was evaluated by acridine staining followed by epifluorescence microscopy and by SEM. A low-cost bioremediation system, using phenol-degrading bacteria immobilised onto residual cork particles (a by-product of the industry) is proposed for the remediation of this industrial effluent (self-bioremediation). PMID:22265252

  15. Screening and identification of newly isolated cellulose-degrading bacteria from the gut of xylophagous termite Microcerotermes diversus (Silvestri).

    Science.gov (United States)

    Pourramezan, Z; Ghezelbash, G R; Romani, B; Ziaei, S; Hedayatkhah, A

    2012-01-01

    The aim of the present study was to isolate and characterize the cellulose-degrading bacteria from the gut of the local termite, Microcerotermes diversus (Silvestri), inhabiting the Khuzestan province of Iran. The microorganisms capable of growing in the liquid medium containing cellulose as the only source of carbon were isolated and their cellulolytic activity on CMC-containing media was confirmed by the congo red clearing zone assay. The isolates were identified based on biochemical characteristics and the phylogenetic analysis of 16S rRNA gene fragments. The results of the present study show that three cellulose-degrading bacteria isolated from local termite guts belonged to the genera Acinetobacter, Pseudomonas and Staphylococcus and four cellulose-degrading bacteria belonged to Enterobacteriaceae and Bacillaceae families. Several isolates recovered from separate termite Microcerotermes diversus samples closely clustered in phylogenetic trees indicating high similarity and the abundance of particular cellulolytic strains. Bacillus B5B and Acinetobacter L9B hydrolyzed cellulose faster than the other isolates (with CMCase activity of 1.47 U/mL and 1.22 U/mL, respectively). The stability of CMCase produced by Bacillus B5B over a broad range of pH and high temperature indicated that the enzyme may be of great commercial value.

  16. A PRELIMINARY STUDY AND FIRST REPORT ON CAFFEINE DEGRADING BACTERIA ISOLATED FROM THE SOILS OF CHITTOOR AND VELLORE

    Directory of Open Access Journals (Sweden)

    Sharan Siddharth

    2012-03-01

    Full Text Available An attempt on basic study of the caffeine degrading organism and screening of potential ‘caffeinase’ producing bacteria has been studied and reported. Caffeine is present in soft drinks, coffee plants, tea leaves, and kola nuts and is used extensively in human consumption. Various health and environmental demerits makes it significant to reduce the levels of caffeine into a much less harmful compound, which can be done biologically using specific microorganisms. The enzyme responsible for caffeine degradation plays a major role and hence needs to be studied for caffeinase isolation and improvement of available caffeine products. Isolation of such microorganisms and their study of extent of caffeine degradation would prove to be helpful in generating an economic and safer method of caffeine removal in food products and coffee left over which could be less harmful to human health and the environment.

  17. Culture-based Identification Of Microcystin-Degrading Bacteria In the Sandusky Bay and Maumee Bay of Lake Erie

    Science.gov (United States)

    Ormiston, A.; Mou, X.

    2012-12-01

    Harmful cyanobacteria blooms (cyanoHABs) are a serious issue that affects wildlife, human health, recreation and local economics worldwide. CyanoHABs produce cyanotoxins, such as microcystins (MCs) that lead to skin irritation, illness and liver tumors. Bacterially mediated degradation of MCs plays a key role to transform these toxic substrates to less harmful metabolites in natural environments. However, only a few Sphingomonos species have been isolated for degradation of MCs and many of which are from other habitats such as water plants. This project aims to isolate and identify bacteria that can degrade MC-LR and MC-RR, two major forms of MCs found during cyanoHABs in Lake Erie. Water samples were collected from the surface of Sandusky Bay and Maumee Bay of Lake Erie and immediately filtered through 3.0 -μm-pore-size membrane filters to obtain bacterioplankton fraction. The filtrates were amended with excessive inorganic nitrogen and phosphorus compounds and incubated in the dark for a week to purposely establish a carbon-limited condition. Afterwards, enrichment microcosms were established in flasks filled with pre-incubated bacterioplankton and single MC compounds (final concentration 10 μM). Once cell growth was confirmed by flow cytometry-based cell counting, bacterial cells in enriched microcosms were transferred onto solid surfaces, i.e., GFF filter and noble agar for colony isolation. Obtained single colonies were inoculated in defined liquid media with MCs as single carbon source. DNA was extracted from each purified isolate and analyzed by restriction fragment length polymorphism analysis (RFLP). A total of 18 different RFLP banding patterns were found, indicating MC-degrading bacteria may be heterogeneous in studied water samples. 16S rRNA genes of selected bacterial isolates were PCR amplified and sequenced for taxonomic identification. Our results demonstrated that MCs can be degraded by multiple bacterial species in Lake Erie. Future directions

  18. Biogenic amines degradation by malolactic bacteria: towards a potential application in wine

    OpenAIRE

    GiuseppeSpano; VittorioCapozzi; Alvarez, Miguel A.; DanielaFiocco; FrancescoGrieco

    2012-01-01

    Biogenic amines in wine represent a toxicological risk for the health of the consumer, with several trade implications. In this study 26 strains of Lactobacillus plantarum were analysed for their ability to degrade biogenic amines commonly found during wine fermentation. Two strains of L. plantarum were selected in reason of their ability to degrade putrescine and tyramine. The degradation was assessed in vitro, both in presence of the biogenic amines and in presence of the specific chemical ...

  19. Simazine degradation in bioaugmented soil: urea impact and response of ammonia-oxidizing bacteria and other soil bacterial communities.

    Science.gov (United States)

    Guo, Qingwei; Wan, Rui; Xie, Shuguang

    2014-01-01

    The objective of this study was to investigate the impact of exogenous urea nitrogen on ammonia-oxidizing bacteria (AOB) and other soil bacterial communities in soil bioaugmented for simazine remediation. The previously isolated simazine-degrading Arthrobacter sp. strain SD1 was used to degrade the herbicide. The effect of urea on the simazine degradation capacity of the soil bioaugmented with Arthrobacter strain SD1 was assessed using quantitative PCR targeting the s-triazine-degrading trzN and atzC genes. Structures of bacterial and AOB communities were characterized using terminal restriction fragment length polymorphism. Urea fertilizer could affect simazine biodegradation and decreased the proportion of its trzN and atzC genes in soil augmented with Arthrobacter strain SD1. Bioaugmentation process could significantly alter the structures of both bacterial and AOB communities, which were strongly affected by urea amendment, depending on the dosage. This study could provide some new insights towards s-triazine bioremediation and microbial ecology in a bioaugmented system. However, further studies are necessary in order to elucidate the impact of different types and levels of nitrogen sources on s-triazine-degraders and bacterial and AOB communities in bioaugmented soil.

  20. Study the symbiotic crude oil-degrading bacteria in the mussel Mactra stultorum collected from the Persian Gulf.

    Science.gov (United States)

    Bayat, Zeynab; Hassanshahian, Mehdi; Hesni, Majid Askari

    2016-04-15

    Symbiotic associations are complex partnerships that can lead to new metabolic capabilities and the establishment of novel organisms. The diversity of these associations is very broad and there are still many mysteries about the origin and the exact relationship between the organisms that are involved in a symbiosis. The aim of the present study is to find symbiotic crude-oil degrading bacteria in the mussels that collected from the Persian Gulf. Fifteen crude-oil degrading bacteria were isolated from Mactra stultorum mussel that collected from oil contaminated area at Persian Gulf. According to high growth rate on crude oil five strains were selected from 15 isolated strains for more study. Determination of the nucleotide sequence of the gene encoding 16S rRNA show that these isolated strains belong to: Alcanivorax dieselolei strain BHA25, Idiomarina baltica strain BHA28, A. dieselolei strain BHA30, Alcanivorax sp. strain BHA32 and Vibrio azureus strain BHA36. Analysis of remaining of crude oil by Gas Chromatography (GC) confirmed that these strains can degrade: 64%, 63%, 71%, 58% and 75% of crude oil respectively. PMID:26922360

  1. Study the symbiotic crude oil-degrading bacteria in the mussel Mactra stultorum collected from the Persian Gulf.

    Science.gov (United States)

    Bayat, Zeynab; Hassanshahian, Mehdi; Hesni, Majid Askari

    2016-04-15

    Symbiotic associations are complex partnerships that can lead to new metabolic capabilities and the establishment of novel organisms. The diversity of these associations is very broad and there are still many mysteries about the origin and the exact relationship between the organisms that are involved in a symbiosis. The aim of the present study is to find symbiotic crude-oil degrading bacteria in the mussels that collected from the Persian Gulf. Fifteen crude-oil degrading bacteria were isolated from Mactra stultorum mussel that collected from oil contaminated area at Persian Gulf. According to high growth rate on crude oil five strains were selected from 15 isolated strains for more study. Determination of the nucleotide sequence of the gene encoding 16S rRNA show that these isolated strains belong to: Alcanivorax dieselolei strain BHA25, Idiomarina baltica strain BHA28, A. dieselolei strain BHA30, Alcanivorax sp. strain BHA32 and Vibrio azureus strain BHA36. Analysis of remaining of crude oil by Gas Chromatography (GC) confirmed that these strains can degrade: 64%, 63%, 71%, 58% and 75% of crude oil respectively.

  2. Carbohydrate-degrading bacteria closely associated with Tetraselmis indica: Influence on algal growth

    Digital Repository Service at National Institute of Oceanography (India)

    Arora, M.; Anil, A.C.; Delany, J.; Rajarajan, N.; Emami, K.; Mesbahi, E.

    The interactions between the algal species Tetraselmis indica and strains of bacteria are examined. Three bacterial strains were isolated and sequence analysis of the 16S rDNA indicated that the organisms belong to the genera Pseudomonas...

  3. Bioaugmentation of biological contact oxidation reactor (BCOR) with phenol-degrading bacteria for coal gasification wastewater (CGW) treatment.

    Science.gov (United States)

    Fang, Fang; Han, Hongjun; Zhao, Qian; Xu, Chunyan; Zhang, Linghan

    2013-12-01

    This study was conducted to evaluate the performance of the biological contact oxidation reactor (BCOR) treating coal gasification wastewater (CGW) after augmented with phenol degrading bacteria (PDB). The PDB were isolated with phenol, 4-methyl phenol, 3,5-dimethyl phenol and resorcinol as carbon resources. Much of the refractory phenolic compounds were converted into easily-biodegradable compounds in spite of low TOC removal. The bioaugmentation with PDB significantly enhanced the removal of COD, total phenols (TP) and NH3-N, with efficiencies from 58% to 78%, 66% to 80%, and 5% to 25%, respectively. In addition, the augmented BCOR exhibited strong recovery capability in TP and COD removal while recovery of NH3-N removal needed longer time. Microbial community analysis revealed that the PDB presented as dominant populations in the bacteria consortia, which in turn determined the overall performance of the system.

  4. Degradation Characteristics of CB3,a Chlorpyrifos Degrading Bacteria Strain%1株毒死蜱降解菌的降解特性

    Institute of Scientific and Technical Information of China (English)

    卢洁; 曹明星; 李晓花; 梁同军; 鲍海鸥

    2013-01-01

    The degradation characteristics of CB3,a chlorpyrifos degrading bacteria strain isolated from soil and waste water contaminated by organophosphorus pesticide for long-term was studied.The results showed that there was a certain synchronism between CB3 growth and chlorpyrifos degradation rate and the degradation rate could be up to 89.6% when the growth of CB3 was the maximum.The degradation rate reached a higher level when the initial concentration was 200 ~ 800 mg/L but the degradation rate decreased gradually with increase of initial concentration when the concentration was above 800 mg/L.The degradation rate of the initial concentration with 2 000 mg/L was 32% only.The degradation rate of CB3 to chlorpyrifos rose with increase of inoculation level when the inoculation level was below 1 ml and there was no significant difference in degradation rate when the inoculation level was 1~2.5 ml.The degradation rate of CB3 to chlorpyrifos under pH 6.0~7.0 and 25~35℃ reached a higher level.CB3 grew well on triazophos,grew badly on malathion or omethoate and did not grow on fenthion or acephate,which indicates that CB3 is of the selectivity to the degradation of organophosphorus pesticide.%为弄清菌株 CB3对毒死蜱的降解特性,采用摇床振荡培养等方法,对从长期受有机磷农药污染的土壤和废水中分离出的1株毒死蜱降解菌的降解特性进行了研究。结果表明:CB3生长和对毒死蜱的降解作用具有一定的同步性,当其生长量最大时,对毒死蜱的降解率达89.6%。初始浓度200~800 mg/L时,CB3对毒死蜱的降解率较高;浓度高于800 mg/L 时,随着初始浓度的增加,降解率逐渐下降;当初始浓度为2000 mg/L 时,降解率仅32%。接种量低于1 mL 时,CB3对毒死蜱的降解率随着接种量增加而提高,当接种量在1~2.5 mL 时,CB3对毒死蜱降解率无明显差异。CB3在 pH6.0~7.0,25~35℃条件下对毒

  5. Draft Genome Sequences of Sphingobium sp. Strain TCM1 and Sphingomonas sp. Strain TDK1, Haloalkyl Phosphate Flame Retardant- and Plasticizer-Degrading Bacteria

    Science.gov (United States)

    Abe, Katsumasa; Kasai, Daisuke; Fukuda, Masao; Takahashi, Shouji

    2016-01-01

    Sphingobium sp. strain TCM1 and Sphingomonas sp. strain TDK1 are haloalkyl phosphate flame retardant- and plasticizer-degrading bacteria. We report here the draft genome sequences of these strains to provide insights into the molecular mechanism underlying their degradation ability. PMID:27417843

  6. Isolation of alkali-tolerant benzene-degrading bacteria from a contaminated aquifer.

    OpenAIRE

    Fahy, A.; Ball, A.S.; Lethbridge, G; Timmis, K N; McGenity, T.J.

    2008-01-01

    AIMS: To isolate benzene-degrading strains from neutral and alkaline groundwaters contaminated by benzene, toluene, ethylbenzene, xylenes (BTEX) from the SIReN aquifer, UK, and to test their effective pH range and ability to degrade TEX. METHODS AND RESULTS: The 14 isolates studied had an optimum pH for growth of 8, and could degrade benzene to below detection level (1 microg l(-1)). Five Rhodococcus erythropolis strains were able to metabolize benzene up to pH 9, two distinct R. erythropolis...

  7. Demonstration of Carbon Catabolite Repression in Naphthalene Degrading Soil Bacteria via Raman Spectroscopy Based Stable Isotope Probing.

    Science.gov (United States)

    Kumar B N, Vinay; Guo, Shuxia; Bocklitz, Thomas; Rösch, Petra; Popp, Jürgen

    2016-08-01

    Carbon catabolite repression (CCR) is a regulatory phenomenon occurring in both lower organisms like bacteria and higher organisms like yeast, which allows them to preferentially utilize a specific carbon source to achieve highest metabolic activity and cell growth. CCR has been intensely studied in the model organisms Escherichia coli and Bacillus subtilis by following diauxic growth curves, assays to estimate the utilization or depletion of carbon sources, enzyme assays, Western blotting and mass spectrometric analysis to monitor and quantify the involvement of specific enzymes and proteins involved in CCR. In this study, we have visualized this process in three species of naphthalene degrading soil bacteria at a single cell level via Raman spectroscopy based stable isotope probing (Raman-SIP) using a single and double labeling approach. This is achieved using a combination of (2)H and (13)C isotope labeled carbon sources like glucose, galactose, fructose, and naphthalene. Time dependent metabolic flux of (13)C and (2)H isotopes has been followed via semi quantification and 2D Raman correlation analysis. For this, the relative intensities of Raman marker bands corresponding to (2)H and (13)C incorporation in newly synthesized macromolecules like proteins and lipids have been utilized. The 2D correlation analysis of time dependent Raman spectra readily identified small sequential changes resulting from isotope incorporation. Overall, we show that Raman-SIP has the potential to be used to obtain information about regulatory processes like CCR in bacteria at a single cell level within a time span of 3 h in fast growing bacteria. We also demonstrate the potential of this approach in identifying the most efficient naphthalene degraders asserting its importance for use in bioremediation. PMID:27305464

  8. Enhancing the biofiltration of geosmin by seeding sand filter columns with a consortium of geosmin-degrading bacteria.

    Science.gov (United States)

    McDowall, Bridget; Hoefel, Daniel; Newcombe, Gayle; Saint, Christopher P; Ho, Lionel

    2009-02-01

    Geosmin is a secondary metabolite that can be produced by many species of cyanobacteria and Actinomycetes. It imparts a musty/earthy taste and odour to drinking water which can result in consumer complaints and a general perception that there is a problem with the water quality. As geosmin is recalcitrant to conventional water treatment, processes are sought to ensure effective removal of this compound from potable water. Biological filtration (biofiltration) is an attractive option for geosmin removal as this compound has been shown to be biodegradable. However, effective biofiltration of geosmin can be site specific as it is highly dependent upon the types of organism present and there is often an extended acclimation period before efficient removals are achieved. We report here, a novel approach to enhance the biofiltration of geosmin by seeding sand filter columns with a bacterial consortium previously shown to be capable of effectively degrading geosmin. Geosmin removals of up to 75% were evident through sand columns which had been inoculated with the geosmin-degrading bacteria, when compared with non-inoculated sand columns where geosmin removals were as low as 25%. These low geosmin removals through the non-inoculated sand columns are consistent with previous studies and were attributed to physical/abiotic losses. The presence of an existing biofilm was shown to influence geosmin removal, as the biofilm allowed for greater attachment of the geosmin-degrading consortium (as determined by an ATP assay), and enhanced removals of geosmin. Minimal difference in geosmin removal was observed when the geosmin-degrading bacteria were inoculated into the sand columns containing either an active or inactive biofilm.

  9. The effect of inoculation of an indigenous bacteria on the early growth of Acacia farnesiana in a degraded area

    Directory of Open Access Journals (Sweden)

    Eliane Ceccon

    2012-03-01

    Full Text Available Restoration of native vegetation and fuelwood production are important environmental pending goals for Mexico, where years of wrong management practices resulted in ecosystemic degradation and fuelwood scarcity. In degraded areas, native rhizobial strains are often undetectable, therefore, the restoration of natural vegetation associated with an effective nodulation of the leguminous trees is mostly appropriate. Sinorhizobium americanum is a native nitrogen-fixing bacteria isolated from nodules of the native Acacia species in the region. Acacia farnesiana is a multipurpose leguminous shrub from Mexican seasonally dry tropical forests (SDTF. In this study we analyzed the effect of inoculation with S. americanum on A. farnesiana growth in a greenhouse and in a very degraded area and compared with non-inoculated seedlings. In a greenhouse, we measured the biomass dry weight of different parts of the plant, using destructive sampling after 15, 20, 30, 45 and 120 days of growth. We also calculated the relative growth rate (RGR and the resources allocation (root/shoot weight ratio and root length/root dry weight of seedlings. In a degraded area we measured the seedling length and survival and calculated the RGR. In the greenhouse and in the degraded area, the inoculation positively affected the growth of seedlings. However in the greenhouse, the inoculation did not have effect on resource allocation patterns. Therefore, the inoculation with Sinorhizobium americanum could improve the A. farnesiana growth and the re-establishment of important plant-soil interactions in degraded areas, being a recommendable technique for land restoration and the improvement of fuelwood production.

  10. Efficiency of the intestinal bacteria in the degradation of the toxic pesticide, chlorpyrifos

    OpenAIRE

    Harishankar, M. K.; C Sasikala; Ramya, M.

    2012-01-01

    Chlorpyrifos (CP) is the most commonly used pesticide throughout the world. Its widespread use in agriculture and its potential toxicity to humans from ingestion of CP contaminated food have raised concerns about its risk to health. Human intestinal microflora has the ability to degrade pesticides, but the exact mechanisms involved and the metabolite end-products formed are not well understood. The primary objective of this work was to analyse the in vitro degradation of CP by five model inte...

  11. Screening of Indigenous Oxalate Degrading Lactic Acid Bacteria from Human Faeces and South Indian Fermented Foods: Assessment of Probiotic Potential

    Directory of Open Access Journals (Sweden)

    Sivasamy Gomathi

    2014-01-01

    Full Text Available Lactic acid bacteria (LAB have the potential to degrade intestinal oxalate and this is increasingly being studied as a promising probiotic solution to manage kidney stone disease. In this study, oxalate degrading LAB were isolated from human faeces and south Indian fermented foods, subsequently assessed for potential probiotic property in vitro and in vivo. Based on preliminary characteristics, 251 out of 673 bacterial isolates were identified as LAB. A total of 17 strains were found to degrade oxalate significantly between 40.38% and 62.90% and were subjected to acid and bile tolerance test. Among them, nine strains exhibited considerable tolerance up to pH 3.0 and at 0.3% bile. These were identified as Lactobacillus fermentum and Lactobacillus salivarius using 16S rDNA sequencing. Three strains, Lactobacillus fermentum TY5, Lactobacillus fermentum AB1, and Lactobacillus salivarius AB11, exhibited good adhesion to HT-29 cells and strong antimicrobial activity. They also conferred resistance to kanamycin, rifampicin, and ampicillin, but were sensitive to chloramphenicol and erythromycin. The faecal recovery rate of these strains was observed as 15.16% (TY5, 6.71% (AB1, and 9.3% (AB11 which indicates the colonization ability. In conclusion, three efficient oxalate degrading LAB were identified and their safety assessments suggest that they may serve as good probiotic candidates for preventing hyperoxaluria.

  12. Screening of indigenous oxalate degrading lactic acid bacteria from human faeces and South Indian fermented foods: assessment of probiotic potential.

    Science.gov (United States)

    Gomathi, Sivasamy; Sasikumar, Ponnusamy; Anbazhagan, Kolandaswamy; Sasikumar, Sundaresan; Kavitha, Murugan; Selvi, M S; Selvam, Govindan Sadasivam

    2014-01-01

    Lactic acid bacteria (LAB) have the potential to degrade intestinal oxalate and this is increasingly being studied as a promising probiotic solution to manage kidney stone disease. In this study, oxalate degrading LAB were isolated from human faeces and south Indian fermented foods, subsequently assessed for potential probiotic property in vitro and in vivo. Based on preliminary characteristics, 251 out of 673 bacterial isolates were identified as LAB. A total of 17 strains were found to degrade oxalate significantly between 40.38% and 62.90% and were subjected to acid and bile tolerance test. Among them, nine strains exhibited considerable tolerance up to pH 3.0 and at 0.3% bile. These were identified as Lactobacillus fermentum and Lactobacillus salivarius using 16S rDNA sequencing. Three strains, Lactobacillus fermentum TY5, Lactobacillus fermentum AB1, and Lactobacillus salivarius AB11, exhibited good adhesion to HT-29 cells and strong antimicrobial activity. They also conferred resistance to kanamycin, rifampicin, and ampicillin, but were sensitive to chloramphenicol and erythromycin. The faecal recovery rate of these strains was observed as 15.16% (TY5), 6.71% (AB1), and 9.3% (AB11) which indicates the colonization ability. In conclusion, three efficient oxalate degrading LAB were identified and their safety assessments suggest that they may serve as good probiotic candidates for preventing hyperoxaluria.

  13. Stable carbon isotope fractionation in chlorinated ethene degradation by bacteria expressing three toluene oxygenases

    Directory of Open Access Journals (Sweden)

    Scott eClingenpeel

    2012-02-01

    Full Text Available One difficulty in using bioremediation at a contaminated site is demonstrating that biodegradation is actually occurring in situ. The stable isotope composition of contaminants may help with this, since they can serve as an indicator of biological activity. To use this approach it is necessary to establish how a particular biodegradation pathway affects the isotopic composition of a contaminant. This study examined bacterial strains expressing three aerobic enzymes for their effect on the 13C/12C ratio when degrading both trichloroethene (TCE and cis-1,2-dichloroethene (c-DCE: toluene 3-monoxygenase, toluene 4-monooxygenase, and toluene 2,3-dioxygenase. We found no significant differences in fractionation among the three enzymes for either compound. Aerobic degradation of c-DCE occurred with low fractionation producing δ13C enrichment factors of -0.9±0.5 to -1.2±0.5, in contrast to reported anaerobic degradation δ13C enrichment factors of -14.1‰ to -20.4‰. Aerobic degradation of TCE resulted in δ13C enrichment factors of -11.6±4.1‰ to -14.7±3.0‰ which overlap reported δ13C enrichment factors for anaerobic TCE degradation of -2.5‰ to -13.8‰. The data from this study suggest that stable isotopes could serve as a diagnostic for detecting aerobic biodegradation of TCE by toluene oxygenases at contaminated sites.

  14. Inhibition of ethanol-producing yeast and bacteria by degradation products produced during pre-treatment of biomass.

    Science.gov (United States)

    Klinke, H B; Thomsen, A B; Ahring, B K

    2004-11-01

    An overview of the different inhibitors formed by pre-treatment of lignocellulosic materials and their inhibition of ethanol production in yeast and bacteria is given. Different high temperature physical pre-treatment methods are available to render the carbohydrates in lignocellulose accessible for ethanol fermentation. The resulting hydrolyzsates contain substances inhibitory to fermentation-depending on both the raw material (biomass) and the pre-treatment applied. An overview of the inhibitory effect on ethanol production by yeast and bacteria is presented. Apart from furans formed by sugar degradation, phenol monomers from lignin degradation are important co-factors in hydrolysate inhibition, and inhibitory effects of these aromatic compounds on different ethanol producing microorganisms is reviewed. The furans and phenols generally inhibited growth and ethanol production rate (Q(EtOH)) but not the ethanol yields (Y(EtOH)) in Saccharomyces cerevisiae. Within the same phenol functional group (aldehyde, ketone, and acid) the inhibition of volumetric ethanol productivity was found to depend on the amount of methoxyl substituents and hence hydrophobicity (log P). Many pentose-utilizing strains Escherichia coli, Pichia stipititis, and Zymomonas mobilis produce ethanol in concentrated hemicellulose liquors but detoxification by overliming is needed. Thermoanaerobacter mathranii A3M3 can grow on pentoses and produce ethanol in hydrolysate without any need for detoxification. PMID:15300416

  15. Use of bromodeoxyuridine immunocapture to identify psychrotolerant phenanthrene-degrading bacteria in phenanthrene-enriched polluted Baltic Sea sediments

    Energy Technology Data Exchange (ETDEWEB)

    Edlund, A.; Jansson, J.

    2008-05-01

    The aim of this study was to enrich and identify psychrotolerant phenanthrenedegrading bacteria from polluted Baltic Sea sediments. Polyaromatic hydrocarbon (PAH)-contaminated sediments were spiked with phenanthrene and incubated for 2 months in the presence of bromodeoxyuridine that is incorporated into the DNA of replicating cells. The bromodeoxyuridine-incorporated DNA was extracted by immunocapture and analyzed by terminal-restriction fragment length polymorphism and 16S rRNA gene cloning and sequencing to identify bacterial populations that were growing. In addition, degradation genes were quantified in the bromodeoxyuridine-incorporated DNA by real-time PCR. Phenanthrene concentrations decreased after 2 months of incubation in the phenanthrene-enriched sediments and this reduction correlated to increases in copy numbers of xylE and phnAc dioxygenase genes. Representatives of Exiguobacterium, Schewanella,Methylomonas, Pseudomonas, Bacteroides and an uncultured Deltaproteobacterium and a Gammaproteobacterium dominated the growing community in the phenanthrene spiked sediments. Isolates that were closely related to three of these bacteria (two pseudomonads and an Exiguobacterium sp.) could reduce phenanthrene concentrations in pure cultures and they all harbored phnAc dioxygenase genes. These results confirm that this combination of culture-based and molecular approaches was useful for identification of actively growing bacterial species with a high potential for phenanthrene degradation.

  16. Survey of microbial oxygenases: trichloroethylene degradation by propane-oxidizing bacteria.

    OpenAIRE

    Wackett, L P; Brusseau, G A; Householder, S R; Hanson, R S

    1989-01-01

    Microorganisms that biosynthesize broad-specificity oxygenases to initiate metabolism of linear and branched-chain alkanes, nitroalkanes, cyclic ketones, alkenoic acids, and chromenes were surveyed for the ability to biodegrade trichloroethylene (TCE). The results indicated that TCE oxidation is not a common property of broad-specificity microbial oxygenases. Bacteria that contained nitropropane dioxygenase, cyclohexanone monooxygenase, cytochrome P-450 monooxygenases, 4-methoxybenzoate monoo...

  17. Gene clusters involved in isethionate degradation by terrestrial and marine bacteria.

    KAUST Repository

    Weinitschke, Sonja

    2010-01-01

    Ubiquitous isethionate (2-hydroxyethanesulfonate) is dissimilated by diverse bacteria. Growth of Cupriavidus necator H16 with isethionate was observed, as was inducible membrane-bound isethionate dehydrogenase (IseJ) and inducible transcription of the genes predicted to encode IseJ and a transporter (IseU). Biodiversity in isethionate transport genes was observed and investigated by transcription experiments.

  18. Cultivating High Efficient Bacteria of Degrading Pulping Wastewater by Ultraviolet Mutagenic Technology

    Institute of Scientific and Technical Information of China (English)

    WU Yi-ning; ZHANG Ying; LIU Shi-rui; REN Nan-qi

    2004-01-01

    Instead of pure bacteria, induction mutation of activated sludge by ultraviolet (Uv) was studied and used to treat pulping wastewater by continuous-flow. The result showed the mutagenic activated sludge had remarkable effect and application potential in pulping wastewater treatment. Comparing with common activated sludge, the mutagenic activated sludge was more suitable for lignose decomposition and had high decomposing efficiency.

  19. Reconditioning of soils degraded through oil contamination using bacteria relating to thiosphaera

    International Nuclear Information System (INIS)

    Bio-preparations based on aerobic bacteria are conventionally used to decontaminate soils of oil. There is a problem of no effect in oil decomposing by using conventional bio-preparations in soils where the depth of oil penetration into the soil exceeds 60 cm in the case of oil outflow. At deep oil penetration into the soil, the efficiency of oil biodegradation with aerobic hydrocarbon oxidizing microorganisms is limited by the factor of oxygen accessibility (oxygen limit). We used Thiosphaera pantotropha as a mono-culture and together with a culture of Pseudomonas putida to solve this problem. Pseudomonas putida being aerobes decompose oil effectively at oil concentration up to 25 g of oil in 1 kg of soil and at the depth of oil penetration into the soil up to 25-30 cm. At a deeper level of soil, the activity of Pseudomonas putida falls because of oxygen limit. At the depth of 60 cm and deeper, Pseudomonas putida stop oxidize and decompose oil because of the limited oxygen accessibility. Bacteria of Thiosphaera pantotropha being elective anaerobes decompose oil both in the presence and in the absence of oxygen, and at low concentrations of oxygen insufficient for vital functions of obligate aerobic species of bacteria. Thus, bacteria of Thiosphaera pantotropha decompose hydrocarbons independently on the depth of oil penetration into the soil. Due to special features of their metabolism, bacteria of Thiosphaera pantotropha can realize their vital functions and decompose hydrocarbons at high oil concentrations in soils at which conventionally used bio-preparations can not be effective. We found out that Thiosphaera decompose sulfurous closed-ring and aromatic compounds in oil which are chemically and thermally stable and can be hardly decomposed, and possess extremely poisonous properties, as well. The use of microorganisms of Thiosphaera pantotropha allows to purify soils polluted with oil and oil products. The results obtained are applied to the cleaning of

  20. Anaerobic BTEX degradation in oil sands tailings ponds: Impact of labile organic carbon and sulfate-reducing bacteria.

    Science.gov (United States)

    Stasik, Sebastian; Wick, Lukas Y; Wendt-Potthoff, Katrin

    2015-11-01

    The extraction of bitumen from oil sands in Alberta (Canada) produces volumes of tailings that are pumped into large anaerobic settling-basins. Beside bitumen, tailings comprise fractions of benzene, toluene, ethylbenzene and xylenes (BTEX) that derive from the application of industrial solvents. Due to their toxicity and volatility, BTEX pose a strong concern for gas- and water-phase environments in the vicinity of the ponds. The examination of two pond profiles showed that concentrations of indigenous BTEX decreased with depth, pointing at BTEX transformation in situ. With depth, the relative contribution of ethylbenzene and xylenes to total BTEX significantly decreased, while benzene increased relatively from 44% to 69%, indicating preferential hydrocarbon degradation. To predict BTEX turnover and residence time, we determined BTEX degradation rates in tailings of different depths in a 180-days microcosm study. In addition, we evaluated the impact of labile organic substrates (e.g. acetate) generally considered to stimulate hydrocarbon degradation and the contribution of sulfate-reducing bacteria (SRB) to BTEX turnover. In all depths, BTEX concentrations significantly decreased due to microbial activity, with degradation rates ranging between 4 and 9 μg kg(-1) d(-1). BTEX biodegradation decreased linearly in correlation with initial concentrations, suggesting a concentration-dependent BTEX transformation. SRB were not significantly involved in BTEX consumption, indicating the importance of methanogenic degradation. BTEX removal decreased to 70-90% in presence of organic substrates presumptively due to an accumulation of acetate that lowered BTEX turnover due to product inhibition. In those assays SRB slightly stimulated BTEX transformation by reducing inhibitory acetate levels. PMID:26066083

  1. Isolation, screening, and characterization of surface-active agent-producing, oil-degrading marine bacteria of Mumbai Harbor.

    Science.gov (United States)

    Mohanram, Rajamani; Jagtap, Chandrakant; Kumar, Pradeep

    2016-04-15

    Diverse marine bacterial species predominantly found in oil-polluted seawater produce diverse surface-active agents. Surface-active agents produced by bacteria are classified into two groups based on their molecular weights, namely biosurfactants and bioemulsifiers. In this study, surface-active agent-producing, oil-degrading marine bacteria were isolated using a modified Bushnell-Haas medium with high-speed diesel as a carbon source from three oil-polluted sites of Mumbai Harbor. Surface-active agent-producing bacterial strains were screened using nine widely used methods. The nineteen bacterial strains showed positive results for more than four surface-active agent screening methods; further, these strains were characterized using biochemical and nucleic acid sequencing methods. Based on the results, the organisms belonged to the genera Acinetobacter, Alcanivorax, Bacillus, Comamonas, Chryseomicrobium, Halomonas, Marinobacter, Nesterenkonia, Pseudomonas, and Serratia. The present study confirmed the prevalence of surface-active agent-producing bacteria in the oil-polluted waters of Mumbai Harbor. PMID:26912197

  2. Degradative Plasmid and Heavy Metal Resistance Plasmid Naturally Coexist in Phenol and Cyanide Assimilating Bacteria

    OpenAIRE

    Bahig E.  Deeb; Abdullah D. Altalhi

    2009-01-01

    Problem statement: Heavy metals are known to be powerful inhibitors of xenobiotics biodegradation activities. Alleviation the inhibitory effect of these metals on the phenol biodegradation activities in presence of heavy metals resistant plasmid was investigated. Approach: Combination of genetic systems of degradation of xenobiotic compound and heavy metal resistance was one of the approaches to the creation of polyfunctional strains for bioremediation of s...

  3. Novel Phenanthrene-Degrading Bacteria Identified by DNA-Stable Isotope Probing.

    Directory of Open Access Journals (Sweden)

    Longfei Jiang

    Full Text Available Microorganisms responsible for the degradation of phenanthrene in a clean forest soil sample were identified by DNA-based stable isotope probing (SIP. The soil was artificially amended with either 12C- or 13C-labeled phenanthrene, and soil DNA was extracted on days 3, 6 and 9. Terminal restriction fragment length polymorphism (TRFLP results revealed that the fragments of 219- and 241-bp in HaeIII digests were distributed throughout the gradient profile at three different sampling time points, and both fragments were more dominant in the heavy fractions of the samples exposed to the 13C-labeled contaminant. 16S rRNA sequencing of the 13C-enriched fraction suggested that Acidobacterium spp. within the class Acidobacteria, and Collimonas spp. within the class Betaproteobacteria, were directly involved in the uptake and degradation of phenanthrene at different times. To our knowledge, this is the first report that the genus Collimonas has the ability to degrade PAHs. Two PAH-RHDα genes were identified in 13C-labeled DNA. However, isolation of pure cultures indicated that strains of Staphylococcus sp. PHE-3, Pseudomonas sp. PHE-1, and Pseudomonas sp. PHE-2 in the soil had high phenanthrene-degrading ability. This emphasizes the role of a culture-independent method in the functional understanding of microbial communities in situ.

  4. Effect of trichloroethylene on the competitive behavior of toluene-degrading bacteria

    NARCIS (Netherlands)

    Mars, Astrid E.; Prins, Gjalt T.; Wietzes, Pieter; Koning, Wim de; Janssen, Dick B.

    1998-01-01

    The influence of trichloroethylene (TCE) on a mixed culture of four different toluene-degrading bacterial strains (Pseudomonas putida mt-2, P. putida F1, P. putida GJ31, and Burkholderia cepacia G4) was studied with a fed-batch culture. The strains were competing for toluene, which was added at a ve

  5. Lignin distribution in waterlogged archaeological Picea abies (L.) Karst degraded by erosion bacteria

    DEFF Research Database (Denmark)

    Pedersen, Nanna Bjerregaard; Schmitt, Uwe Schmitt; Koch, Gerald;

    2014-01-01

    The lignin distribution in poles of waterlogged archaeological Picea abies (L.) Karst, which was decayed by erosion bacteria (EB) under anoxic conditions for approximately 400 years, was topochemically identified by transmission electron microscopy (TEM) and high resolution UV-microspectrophotome......The lignin distribution in poles of waterlogged archaeological Picea abies (L.) Karst, which was decayed by erosion bacteria (EB) under anoxic conditions for approximately 400 years, was topochemically identified by transmission electron microscopy (TEM) and high resolution UV......-microspectrophotometry (UMSP). Lignin rich cell wall compartments such as cell corner (CC), compound middle lamella (CML), torus, initial pit border and mild compression wood (CW) appeared morphologically well preserved together with S1 and S3 layers and epithelial and ray parenchyma cells. Residual material (RM) from...

  6. Isolation and identification of oil sludge degrading bacteria from production tank Number 9 Masjed Soleiman

    OpenAIRE

    Yalda Sheyni; Hossein Motamedi; Ahmadali Pourbabaei

    2014-01-01

      Introduction: “Bioremediation” is one of the most effective methods to remove petroleum contaminants. The aim of the present study is to isolate the indigenous bacteria from the waste petroleum in the Masjed Soleiman No. 9 production tank and to examine the effect of their application on the elimination of petroleum heavy chain hydrocarbons and converting them into light compounds .   Materials and methods: Two percent of petroleum sludge was inoculated to the mineral basal medium and after...

  7. Deep-sea oil plume enriches psychrophilic oil-degrading bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Hazen, T.C.; Dubinsky, E.A.; DeSantis, T.Z.; Andersen, G.L.; Piceno, Y.M.; Singh, N.; Jansson, J.K.; Probst, A.; Borglin, S.E.; Fortney, J.L.; Stringfellow, W.T.; Bill, M.; Conrad, M.S.; Tom, L.M.; Chavarria, K.L.; Alusi, T.R.; Lamendella, R.; Joyner, D.C.; Spier, C.; Auer, M.; Zemla, M.L.; Chakraborty, R.; Sonnenthal, E.L.; D' haeseleer, P.; Holman, H.-Y. N.; Osman, S.; Lu, Z.; Van Nostrand, J.D.; Deng, Y.; Zhou, J.; Mason, O.U.

    2010-09-01

    The biological effects and expected fate of the vast amount of oil in the Gulf of Mexico from the Deepwater Horizon blowout are unknown owing to the depth and magnitude of this event. Here, we report that the dispersed hydrocarbon plume stimulated deep-sea indigenous {gamma}-Proteobacteria that are closely related to known petroleum degraders. Hydrocarbon-degrading genes coincided with the concentration of various oil contaminants. Changes in hydrocarbon composition with distance from the source and incubation experiments with environmental isolates demonstrated faster-than-expected hydrocarbon biodegradation rates at 5 C. Based on these results, the potential exists for intrinsic bioremediation of the oil plume in the deep-water column without substantial oxygen drawdown.

  8. DETECTION OF PHENOL DEGRADING BACTERIA AND PSEUDOMONAS PUTIDA IN ACTIVATED SLUDGE BY POLYMERASE CHAIN REACTION

    OpenAIRE

    H. Movahedyan ، H. Khorsandi ، R. Salehi ، M. Nikaeen

    2009-01-01

    Phenol is one of the organic pollutants in various industrial wastewaters especially petrochemical and oil refining. Biological treatment is one of the considerable choices for removing of phenol present in these wastewaters. Identification of effective microbial species is considered as one of the important priorities for production of the biomass in order to achieve desirable kinetic of biological reactions. Basic purpose of this research is identification of phenol-degrading Pseudomonas Pu...

  9. Soil bacteria showing a potential of chlorpyrifos degradation and plant growth enhancement

    OpenAIRE

    Akbar, Shamsa; Sultan, Sikander

    2016-01-01

    Background Since 1960s, the organophosphate pesticide chlorpyrifos has been widely used for the purpose of pest control. However, given its persistence and toxicity towards life forms, the elimination of chlorpyrifos from contaminated sites has become an urgent issue. For this process bioremediation is the method of choice. Results Two bacterial strains, JCp4 and FCp1, exhibiting chlorpyrifos-degradation potential were isolated from pesticide contaminated agricultural fields. These isolates w...

  10. Alkane and crude oil degrading bacteria from the petroliferous soil of India

    International Nuclear Information System (INIS)

    It has been estimated that approximately 0.5 percent of transported crude oil finds its way into seawater, largely through accidental spills and discharge of ballast and wash water from oil tankers. Some microorganisms are well known for their ability to degrade a variety of hydrocarbons present in crude oil. Oil spills at sea or on land have demonstrated the hydrocarbon-degrading potential of these organisms. Under laboratory conditions, nitrogen may be supplied in soluble form (inorganic salts of ammonia or nitrate of urea). Since most natural aquatic environments are deficient in utilizable forms of nitrogen, it is necessary to add the same exogeneously, but because of rapid dilution the added source of nitrogen does not remain effective. The need for nitrogen supplements may be overcome by appropriate choice of microbes with the genetic capacity to fix molecular nitrogen. In this paper the authors are reporting the isolation of a strain of Pseudomonas stutzeri from the petroliferous soil of India. This strain has the capacity to degrade alkane and crude oil and to fix nitrogen

  11. Isolation and Characterization of Polyacrylamide-Degrading Bacteria from Dewatered Sludge

    Directory of Open Access Journals (Sweden)

    Feng Yu

    2015-04-01

    Full Text Available Polyacrylamide (PAM is a water-soluble polymer that is widely used as a flocculant in sewage treatment. The accumulation of PAM affects the formation of dewatered sludge and potentially produces hazardous monomers. In the present study, the bacterial strain HI47 was isolated from dewatered sludge. This strain could metabolize PAM as its sole nutrient source and was subsequently identified as Pseudomonas putida. The efficiency of PAM degradation was 31.1% in 7 days and exceeded 45% under optimum culture condition (pH 7.2, 39 °C and 100 rpm. The addition of yeast extract and glucose improved the bacterial growth and PAM degradation. The degraded PAM samples were analyzed by gel-filtration chromatography, Fourier transform infrared and high-performance liquid chromatography. The results showed that high-molecular-weight PAM was partly cleaved to small molecular oligomer derivatives and part of the amide groups of PAM had been converted to carboxyl groups. The biodegradation did not accumulate acrylamide monomers. Based on the SDS-PAGE and N-terminal sequencing results, the PAM amide groups were converted into carboxyl groups by a PAM-induced extracellular enzyme from the aliphatic amidase family.

  12. Characterization of poly(L-lactide)-degrading enzyme produced by thermophilic filamentous bacteria Laceyella sacchari LP175.

    Science.gov (United States)

    Hanphakphoom, Srisuda; Maneewong, Narisara; Sukkhum, Sukhumaporn; Tokuyama, Shinji; Kitpreechavanich, Vichien

    2014-01-01

    Eleven strains of poly(L-lactide) (PLLA)-degrading thermophilic bacteria were isolated from forest soils and selected based on clear zone formation on an emulsified PLLA agar plate at 50°C. Among the isolates, strain LP175 showed the highest PLLA-degrading ability. It was closely related to Laceyella sacchari, with 99.9% similarity based on the 16S rRNA gene sequence. The PLLA-degrading enzyme produced by the strain was purified to homogeneity by 48.1% yield and specific activity of 328 U·mg-protein-1 with a 15.3-fold purity increase. The purified enzyme was strongly active against specific substrates such as casein and gelatin and weakly active against Suc-(Ala)₃-pNA. Optimum enzyme activity was exhibited at a temperature of 60°C with thermal stability up to 50°C and a pH of 9.0 with pH stability in a range of 8.5-10.5. Molecular weight of the enzyme was approximately 28.0 kDa, as determined by gel filtration and SDS-PAGE. The inhibitors phenylmethylsulfonyl fluoride (PMSF), ethylenediaminetetraacetate (EDTA), and ethylene glycol-bis(2-aminoethylether)-N,N,N',N'-tetraacetic acid (EGTA) strongly inhibited enzyme activity, but the activity was not inhibited by 1 mM 1,10-phenanthroline (1,10-phen). The N-terminal amino acid sequences had 100% homology with thermostable serine protease (thermitase) from Thermoactinomyces vulgaris. The results obtained suggest that the PLLA-degrading enzyme produced by L. sacchari strain LP175 is serine protease. PMID:24646757

  13. Identification of Rothia bacteria as gluten-degrading natural colonizers of the upper gastro-intestinal tract.

    Directory of Open Access Journals (Sweden)

    Maram Zamakhchari

    Full Text Available BACKGROUND: Gluten proteins, prominent constituents of barley, wheat and rye, cause celiac disease in genetically predisposed subjects. Gluten is notoriously difficult to digest by mammalian proteolytic enzymes and the protease-resistant domains contain multiple immunogenic epitopes. The aim of this study was to identify novel sources of gluten-digesting microbial enzymes from the upper gastro-intestinal tract with the potential to neutralize gluten epitopes. METHODOLOGY/PRINCIPAL FINDINGS: Oral microorganisms with gluten-degrading capacity were obtained by a selective plating strategy using gluten agar. Microbial speciations were carried out by 16S rDNA gene sequencing. Enzyme activities were assessed using gliadin-derived enzymatic substrates, gliadins in solution, gliadin zymography, and 33-mer α-gliadin and 26-mer γ-gliadin immunogenic peptides. Fragments of the gliadin peptides were separated by RP-HPLC and structurally characterized by mass spectrometry. Strains with high activity towards gluten were typed as Rothia mucilaginosa and Rothia aeria. Gliadins (250 µg/ml added to Rothia cell suspensions (OD(620 1.2 were degraded by 50% after ∼30 min of incubation. Importantly, the 33-mer and 26-mer immunogenic peptides were also cleaved, primarily C-terminal to Xaa-Pro-Gln (XPQ and Xaa-Pro-Tyr (XPY. The major gliadin-degrading enzymes produced by the Rothia strains were ∼70-75 kDa in size, and the enzyme expressed by Rothia aeria was active over a wide pH range (pH 3-10. CONCLUSION/SIGNIFICANCE: While the human digestive enzyme system lacks the capacity to cleave immunogenic gluten, such activities are naturally present in the oral microbial enzyme repertoire. The identified bacteria may be exploited for physiologic degradation of harmful gluten peptides.

  14. Degradation of phenolic contaminants in ground water by anaerobic bacteria: St. Louis Park, Minnesota

    Science.gov (United States)

    Ehrlich, G.G.; Goerlitz, D.F.; Godsy, E.M.; Hult, M.F.

    1982-01-01

    Coal-tar derivatives from a coal-tar distillation and wood-treating plant that operated from 1918 to 1972 at St. Louis Park, Minnesota contaminated the near-surface ground water. Solutions of phenolic compounds and a water-immiscible mixture of polynuclear aromatic compounds accumulated in wetlands near the plant site and entered the aquifer. The concentration of phenolic compounds in the aqueous phase under the wetlands is about 30 mg/1 but decreases to less than 0.2 mg/1 at a distance of 430 m immediately downgradient from the source. Concentrations of naphthalene (the predominant polynuclear compound in the ground water) and sodium (selected as a conservative tracer) range from about 20 mg/1 and 430 mg/1 in the aqueous phase at the source to about 2 mg/1 and 120 mg/1 at 430 m downgradient, respectively. Phenolic compounds and naphthalene are disappearing faster than expected if only dilution were occurring. Sorption of phenolic compounds on aquifer sediments is negligible but naphthalene is slightly sorbed. Anaerobic biodegradation of phenolic compounds is primarily responsible for the observed attenuation. Methane was found only in water samples from the contaminated zone (2-20 mg/1). Methane-producing bacteria were found only in water from the contaminated zone. Methane was produced in laboratory cultures of contaminated water inoculated with bacteria from the contaminated zone. Evidence for anaerobic biodegradation of naphthalene under either field or laboratory conditions was not obtained.

  15. Degradative Plasmid and Heavy Metal Resistance Plasmid Naturally Coexist in Phenol and Cyanide Assimilating Bacteria

    Directory of Open Access Journals (Sweden)

    Bahig E.  Deeb

    2009-01-01

    Full Text Available Problem statement: Heavy metals are known to be powerful inhibitors of xenobiotics biodegradation activities. Alleviation the inhibitory effect of these metals on the phenol biodegradation activities in presence of heavy metals resistant plasmid was investigated. Approach: Combination of genetic systems of degradation of xenobiotic compound and heavy metal resistance was one of the approaches to the creation of polyfunctional strains for bioremediation of soil after co-contamination with organic pollutants and heavy metals. Results: A bacterial strain Pseudomonas putida PhCN (pPhCN1, pPhCN2 had been obtained. This bacterium contained two plasmids, a 120 Kb catabolic plasmid that encode for breakdown of phenol (pPhCN1 and pPhCN2 plasmid (100 Kb that code for cadmium and copper resistant. Cyanide assimilation by this bacterium was encoded by chromosomal genes. The inhibitory effect of cadmium (Cd2+ or copper (Cu2+ on the degradation of phenol and cyanide by P. putida strains PhCN and PhCN1 (contained pPhCN1 were investigated. The resistant strain PhCN showed high ability to degrade phenol and cyanide in presence of Cd2+ or Cu2+ comparing with the sensitive strain PhCN1. In addition, Cd2+ or Cu2+ was also found to exert a strong inhibitory effect on the C23O dioxygenase enzyme activity in the presence of cyanide as a nitrogen source. Conclusion: The presence of heavy metal resistance plasmid alleviated the inhibitory effect of metals on the phenol and cyanide assimilation by resistant strain.

  16. Effect of trichloroethylene on the competitive behavior of toluene-degrading bacteria

    OpenAIRE

    Mars, Astrid E; Prins, Gjalt T.; Wietzes, Pieter; de Koning, Wim; Janssen, Dick B.

    1998-01-01

    The influence of trichloroethylene (TCE) on a mixed culture of four different toluene-degrading bacterial strains (Pseudomonas putida mt-2, P. putida F1, P. putida GJ31, and Burkholderia cepacia G4) was studied with a fed-batch culture. The strains were competing for toluene, which was added at a very low rate (31 nmol mg of cells [dry weight](-1) h(-1)). All four strains were maintained in the mixed culture at comparable numbers when TCE was absent. After the start of the addition of TCE, th...

  17. Identification of triclosan-degrading bacteria using stable isotope probing, fluorescence in situ hybridization and microautoradiography

    DEFF Research Database (Denmark)

    Lolas, Ihab Bishara Yousef; Chen, Xijuan; Bester, Kai;

    2012-01-01

    Triclosan is considered a ubiquitous pollutant and can be detected in a wide range of environmental samples. Triclosan removal by wastewater treatment plants has been largely attributed to biodegradation processes; however, very little is known about the micro-organisms involved. In this study, DNA......-based stable isotope probing (DNA-SIP) combined with microautoradiography-fluorescence in situ hybridization (MAR-FISH) was applied to identify active triclosan degraders in an enrichment culture inoculated with activated sludge. Clone library sequences of 16S rRNA genes derived from the heavy DNA fractions...

  18. Degradation Action of the Anaerobic Bacteria and Oxygen to the Polymer

    Institute of Scientific and Technical Information of China (English)

    LU Xiang-Guo; ZHANG Ke

    2008-01-01

    Oxygen could prohibit anaerobic bacterium in the produced water and degrade the polymer molecular chains.Aiming at problems making up aerobic polymer solution by the produced water in Daqing Oil Field, some evaluations were done on the viscosity characteristics of polymer solution and bactericide in anaerobic and aerobic environments. Reasonable aerobic concentration of the produced water was obtained. The experimental results indicate that the viscosity of polymer solution confected by the produced water in the aerobic environment is higher than that of the polymer solution confected by the produced water in the anaerobic environment, and the reasonable ments, but the sterilization effect is better in the aerobic environment.

  19. Synchrotron FT-FIR spectroscopy of nitro-derivatives vapors: New spectroscopic signatures of explosive taggants and degradation products

    Science.gov (United States)

    Cuisset, Arnaud; Gruet, Sébastien; Pirali, Olivier; Chamaillé, Thierry; Mouret, Gaël

    2014-11-01

    We report on the first successful rovibrational study of gas phase mononitrotoluene and dinitrotoluene in the TeraHertz/Far-Infrared (THz/FIR) spectral domain. Using the AILES beamline of the synchrotron SOLEIL and a Fourier Transform spectrometer connected to multipass cells, the low-energy vibrational cross-sections of the different isomers of mononitrotoluene have been measured and compared to calculated spectra with the density functional theory including the anharmonic contribution. The active FIR modes of 2,4 and 2,6 dinitrotoluene have been assigned to the vibrational bands measured by Fourier Transform FIR spectroscopy of the gas-phase molecular cloud produced in an evaporating/recondensating system. This study highlights the selectivity of gas phase THz/FIR spectroscopy allowing an unambiguous recognition and discrimination of nitro-aromatic compounds used as explosive taggants.

  20. Isolation and survey of novel fluoroacetate-degrading bacteria belonging to the phylum Synergistetes.

    Science.gov (United States)

    Davis, Carl K; Webb, Richard I; Sly, Lindsay I; Denman, Stuart E; McSweeney, Chris S

    2012-06-01

    Microbial dehalogenation of chlorinated compounds in anaerobic environments is well known, but the degradation of fluorinated compounds under similar conditions has rarely been described. Here, we report on the isolation of a bovine rumen bacterium that metabolizes fluoroacetate under anaerobic conditions, the mode of degradation and its presence in gut ecosystems. The bacterium was identified using 16S rRNA gene sequence analysis as belonging to the phylum Synergistetes and was designated strain MFA1. Growth was stimulated by amino acids with greater quantities of amino acids metabolized in the presence of fluoroacetate, but sugars were not fermented. Acetate, formate, propionate, isobutryate, isovalerate, ornithine and H(2) were end products of amino acid metabolism. Acetate was the primary end product of fluoroacetate dehalogenation, and the amount produced correlated with the stoichiometric release of fluoride which was confirmed using fluorine nuclear magnetic resonance ((19) F NMR) spectroscopy. Hydrogen and formate produced in situ were consumed during dehalogenation. The growth characteristics of strain MFA1 indicated that the bacterium may gain energy via reductive dehalogenation. This is the first study to identify a bacterium that can anaerobically dehalogenate fluoroacetate. Nested 16S rRNA gene-specific PCR assays detected the bacterium at low numbers in the gut of several herbivore species.

  1. Isolation of hydrocarbon-degrading and biosurfactant-producing bacteria and assessment their plant growth-promoting traits.

    Science.gov (United States)

    Pacwa-Płociniczak, Magdalena; Płociniczak, Tomasz; Iwan, Joanna; Żarska, Monika; Chorążewski, Mirosław; Dzida, Marzena; Piotrowska-Seget, Zofia

    2016-03-01

    Forty-two hydrocarbon-degrading bacterial strains were isolated from the soil heavily contaminated with petroleum hydrocarbons. Forty-one strains were identified based on their whole-cell fatty acid profiles using the MIDI-MIS method. Thirty-three of them belong to species Rhodococcus erythropolis, while the others to the genera Rahnella (4), Serratia (3) and Proteus (1). Isolates were screened for their ability to produce biosurfactants/bioemulsifiers. For all of them the activity of several mechanisms characteristic for plant growth-promoting bacteria was also determined. In order to investigate surface active and emulsifying abilities of isolates following methods: oil-spreading, blood agar, methylene blue agar and determination of emulsification index, were used. Among studied bacteria 12 strains (CD 112, CD 126, CD 131, CD 132, CD 135, CD 147, CD 154, CD 155, CD 158, CD 161, CD 166 and CD 167) have been chosen as promising candidates for the production of biosurfactants and/or bioemulsifiers. Among them 2 strains (R. erythropolis CD 126 and Rahnella aquatilis CD 132) had the highest potential to be used in the bioaugmentation of PH-contaminated soil. Moreover, 15 of tested strains (CD 105, CD 106, CD 108, CD 111, CD 116, CD 120, CD 124, CD 125, CD 130, CD 132, CD 134, CD 154, CD 156, CD 161 and CD 170) showed the activity of four mechanisms (ACC deaminase activity, IAA and siderophore production, phosphate solubilization) considered to be characteristic for plant growth-promoting bacteria. Two of them (R. erythropolis CD 106 and R. erythropolis CD 111) showed the highest activity of above-mentioned mechanisms and thus are considered as promising agents in microbe assisted phytoremediation. PMID:26708648

  2. High-throughput pyrosequencing analysis of bacteria relevant to cometabolic and metabolic degradation of ibuprofen in horizontal subsurface flow constructed wetlands.

    Science.gov (United States)

    Li, Yifei; Wu, Bing; Zhu, Guibing; Liu, Yu; Ng, Wun Jern; Appan, Adhityan; Tan, Soon Keat

    2016-08-15

    The potential toxicity of pharmaceutical residues including ibuprofen on the aquatic vertebrates and invertebrates has attracted growing attention to the pharmaceutical pollution control using constructed wetlands, but there lacks of an insight into the relevant microbial degradation mechanisms. This study investigated the bacteria associated with the cometabolic and metabolic degradation of ibuprofen in a horizontal subsurface flow constructed wetland system by high-throughput pyrosequencing analysis. The ibuprofen degradation dynamics, bacterial diversity and evenness, and bacterial community structure in a planted bed with Typha angustifolia and an unplanted bed (control) were compared. The results showed that the plants promoted the microbial degradation of ibuprofen, especially at the downstream zones of wetland. However, at the upstream one-third zone of wetland, the presence of plants did not significantly enhance ibuprofen degradation, probably due to the much greater contribution of cometabolic behaviors of certain non-ibuprofen-degrading microorganisms than that of the plants. By analyzing bacterial characteristics, we found that: (1) The aerobic species of family Flavobacteriaceae, family Methylococcaceae and genus Methylocystis, and the anaerobic species of family Spirochaetaceae and genus Clostridium_sensu_stricto were the most possible bacteria relevant to the cometabolic degradation of ibuprofen; (2) The family Rhodocyclaceae and the genus Ignavibacterium closely related to the plants appeared to be associated with the metabolic degradation of ibuprofen. PMID:27110975

  3. Physiological aspects of mangrove (Laguncularia racemosa) grown in microcosms with oil-degrading bacteria and oil contaminated sediment

    International Nuclear Information System (INIS)

    To assess the severity of oil spills on mangroves, diagnosis of the vegetation health is crucial. Some aspects of photosynthesis such as photochemical efficiency and leaf pigment composition together with the level of oxidative stress may constitute reliable indicators for vegetation health. To test this approach 14 month old Laguncularia racemosa were contaminated with 5 L m−2 of the marine fuel oil MF-380 and treated with an oil degrading bacterial consortium in microcosms. Contamination resulted in a 20% decrease in shoot dry weight after 128 days. Photochemical efficiency, pigment content, catalase and ascorbate peroxidase remained unchanged. Multivariate ordination of DGGE microbial community fingerprints revealed a pronounced separation between the oil contaminated and the non-contaminated samples. Further studies are necessary before physiological parameters can be recommended as indicators for plant's health in oil polluted mangroves. - Highlights: ► L. racemosa growth rate was reduced by 20% in response to a simulated oil spill of 5 L m−2 in a microcosm. ► Photochemistry was not directly affected by the oil contamination during the 128-day experiment. ► Oil contamination changed the rhizobacterial community. ► The oil degrading bacteria consortium did not affect plant growth. - Despite the need to establish methods to diagnose the health status of mangroves little is known about the impacts of petrochemicals on mangrove plants and associated rhizosphere microorganisms.

  4. Co-metabolic formation of substituted phenylacetic acids by styrene-degrading bacteria

    Directory of Open Access Journals (Sweden)

    Michel Oelschlägel

    2015-06-01

    The styrene-degrading strains Rhodococcus opacus 1CP, Pseudomonas fluorescens ST, and the novel isolates Sphingopyxis sp. Kp5.2 and Gordonia sp. CWB2 were investigated with respect to their applicability to co-metabolically produce substituted phenylacetic acids. Isolates were found to differ significantly in substrate tolerance and biotransformation yields. Especially, P. fluorescens ST was identified as a promising candidate for the production of several phenylacetic acids. The biotransformation of 4-chlorostyrene with cells of strain ST was shown to be stable over a period of more than 200 days and yielded about 38 mmolproduct gcelldryweight−1 after nearly 350 days. Moreover, 4-chloro-α-methylstyrene was predominantly converted to the (S-enantiomer of the acid with 40% enantiomeric excess.

  5. Distribution of PAHs and the PAH-degrading bacteria in the deep-sea sediments of the high-latitude Arctic Ocean

    Science.gov (United States)

    Dong, C.; Bai, X.; Sheng, H.; Jiao, L.; Zhou, H.; Shao, Z.

    2015-04-01

    Polycyclic aromatic hydrocarbons (PAHs) are common organic pollutants that can be transferred long distances and tend to accumulate in marine sediments. However, less is known regarding the distribution of PAHs and their natural bioattenuation in the open sea, especially the Arctic Ocean. In this report, sediment samples were collected at four sites from the Chukchi Plateau to the Makarov Basin in the summer of 2010. PAH compositions and total concentrations were examined with GC-MS. The concentrations of 16 EPA-priority PAHs varied from 2.0 to 41.6 ng g-1 dry weight and decreased with sediment depth and movement from the southern to the northern sites. Among the targeted PAHs, phenanthrene was relatively abundant in all sediments. The 16S rRNA gene of the total environmental DNA was analyzed with Illumina high-throughput sequencing (IHTS) to determine the diversity of bacteria involved in PAH degradation in situ. The potential degraders including Cycloclasticus, Pseudomonas, Halomonas, Pseudoalteromonas, Marinomonas, Bacillus, Dietzia, Colwellia, Acinetobacter, Alcanivorax, Salinisphaera and Shewanella, with Dietzia as the most abundant, occurred in all sediment samples. Meanwhile, enrichment with PAHs was initiated onboard and transferred to the laboratory for further enrichment and to obtain the degrading consortia. Most of the abovementioned bacteria in addition to Hahella, Oleispira, Oceanobacter and Hyphomonas occurred alternately as predominant members in the enrichment cultures from different sediments based on IHTS and PCR-DGGE analysis. To reconfirm their role in PAH degradation, 40 different bacteria were isolated and characterized, among which Cycloclasticus Pseudomonas showed the best degradation capability under low temperatures. Taken together, PAHs and PAH-degrading bacteria were widespread in the deep-sea sediments of the Arctic Ocean. We propose that bacteria of Cycloclasticus, Pseudomonas, Pseudoalteromonas, Halomonas, Marinomonas and Dietzia may

  6. Distribution of PAHs and the PAH-degrading bacteria in the deep-sea sediments of the high-latitude Arctic Ocean

    Directory of Open Access Journals (Sweden)

    C. Dong

    2014-09-01

    Full Text Available Polycyclic aromatic hydrocarbons (PAHs are persistent organic pollutants, which can be transferred to a long distance and tend to accumulation in marine sediment. However, PAHs distribution and natural bioattenuation is less known in open sea, especially in the Arctic Ocean. In this report, sediment samples were collected at four sites from the Chukchi Plateau to Makarov Basin in the summer of 2010. PAH composition and total concentrations were examined with GC-MS, we found that the concentrations of 16 EPA-priority PAHs varied from 2.0 to 41.6 ng g−1 dry weight in total and decreased with sediment depths and as well as from the southern to northern sites. Among the targeted PAHs, phenanthrene was relatively abundant in all sediments. To learn the diversity of bacteria involved in PAHs degradation in situ, the 16S rRNA gene of the total environmental DNA was analyzed with Illumina high throughput sequencing (IHTS. In all the sediments, occurred the potential degraders including Cycloclasticus, Pseudomonas, Halomonas, Pseudoalteromonas, Marinomonas, Bacillus, Dietzia, Colwellia, Acinetobacter, Alcanivorax, Salinisphaera and Shewanella, with Dietzia as the most abundant. Meanwhile on board, enrichment with PAHs was initiated and repeated transfer in laboratory to obtain the degrading consortia. Most above mentioned bacteria in addition to Hahella, Oleispira, Oceanobacter and Hyphomonas, occurred alternately as a predominant member in enrichment cultures from different sediments, as revealed with IHTS and PCR-DGGE. To reconfirm their role in PAH degradation, 40 different bacteria were isolated and characterized, among which Cycloclasticus and Pseudomonas showed the best degradation capability under low temperature. Taken together, PAHs and PAH-degrading bacteria were widespread in the deep-sea sediments of the Arctic Ocean. We propose that bacteria of Cycloclasticus, Pseudomonas, Pseudoalteromonas, Halomonas, Marinomonas and Dietzia may play the

  7. Distribution of PAHs and the PAH-degrading bacteria in the deep-sea sediments of the high-latitude Arctic Ocean

    Science.gov (United States)

    Dong, C.; Bai, X.; Sheng, H.; Jiao, L.; Zhou, H.; Shao, Z.

    2014-09-01

    Polycyclic aromatic hydrocarbons (PAHs) are persistent organic pollutants, which can be transferred to a long distance and tend to accumulation in marine sediment. However, PAHs distribution and natural bioattenuation is less known in open sea, especially in the Arctic Ocean. In this report, sediment samples were collected at four sites from the Chukchi Plateau to Makarov Basin in the summer of 2010. PAH composition and total concentrations were examined with GC-MS, we found that the concentrations of 16 EPA-priority PAHs varied from 2.0 to 41.6 ng g-1 dry weight in total and decreased with sediment depths and as well as from the southern to northern sites. Among the targeted PAHs, phenanthrene was relatively abundant in all sediments. To learn the diversity of bacteria involved in PAHs degradation in situ, the 16S rRNA gene of the total environmental DNA was analyzed with Illumina high throughput sequencing (IHTS). In all the sediments, occurred the potential degraders including Cycloclasticus, Pseudomonas, Halomonas, Pseudoalteromonas, Marinomonas, Bacillus, Dietzia, Colwellia, Acinetobacter, Alcanivorax, Salinisphaera and Shewanella, with Dietzia as the most abundant. Meanwhile on board, enrichment with PAHs was initiated and repeated transfer in laboratory to obtain the degrading consortia. Most above mentioned bacteria in addition to Hahella, Oleispira, Oceanobacter and Hyphomonas, occurred alternately as a predominant member in enrichment cultures from different sediments, as revealed with IHTS and PCR-DGGE. To reconfirm their role in PAH degradation, 40 different bacteria were isolated and characterized, among which Cycloclasticus and Pseudomonas showed the best degradation capability under low temperature. Taken together, PAHs and PAH-degrading bacteria were widespread in the deep-sea sediments of the Arctic Ocean. We propose that bacteria of Cycloclasticus, Pseudomonas, Pseudoalteromonas, Halomonas, Marinomonas and Dietzia may play the most important role

  8. Characteristics of developed granules containing selected decolourising bacteria for the degradation of textile wastewater.

    Science.gov (United States)

    Ibrahim, Z; Amin, M F M; Yahya, A; Aris, A; Muda, K

    2010-01-01

    Textile wastewater, one of the most polluted industrial effluents, generally contains substantial amount of dyes and chemicals that will cause increase in the COD, colour and toxicity of receiving water bodies if not properly treated. Current treatment methods include chemical and biological processes; the efficiency of the biological treatment method however, remains uncertain since the discharged effluent is still highly coloured. In this study, granules consisting mixed culture of decolourising bacteria were developed and the physical and morphological characteristics were determined. After the sixth week of development, the granules were 3-10 mm in diameter, having good settling property with settling velocity of 70 m/h, sludge volume index (SVI) of 90 to 130 mL/g, integrity coefficient of 3.7, and density of 66 g/l. Their abilities to treat sterilised raw textile wastewater were evaluated based on the removal efficiencies of COD (initial ranging from 200 to 3,000 mg/L), colour (initial ranging from 450 to 2000 ADMI) of sterilised raw textile wastewater with pH from 6.8 to 9.4. Using a sequential anaerobic-aerobic treatment cycle with hydraulic retention time (HRT) of 24 h, maximum removal of colour and COD achieved was 90% and 80%, respectively.

  9. Isolation and identification of α-Endosulfan degrading bacteria from insect microflora

    Directory of Open Access Journals (Sweden)

    Özlem Gür Özdal

    2016-04-01

    Full Text Available Increasing of industrialization and population has resulted in the accumulation of a wide variety of chemicals. Especially, widespread use of synthetic and toxic chemicals have led to an effort to improve new technologies to reduce or eliminate these contaminants from the environment. Chemical methods that used for the treatment of toxic materials are expensive, time-consuming and difficult, especially in extensive agricultural areas. Furthermore these methods led to formation of new chemical pollutants. Recent years, one promising alternative treatment method is to use of microorganisms for the biodegradation of these toxic chemicals. This method is effective, minimally hazardous, economical, versatile and environment friendly. In this study, we thought that microflora of insecticide resistant insects may be a potential reservoir for the isolation of new bacteria that can be used for the biodegradation of insecticides. In this research work, totally 24 bacterial isolates capable of biodegradation α-endosulsan were isolated from the body microflora of insects belong to Orthoptera, Dermaptera, Mantodea and Hymenoptera orders. Based on the some morphological, physiological and biochemical characteristics and fatty acid profiles they were identified as Stenotrophomonas, Pseudomonas, Acinetobacter, Bacillus, Brevibacillus, Flavimonas and Rhodococcus. As a result, these isolates can be used for the treatment of α-endosulfan residues at different environments.

  10. Sterilization of Exopolysaccharides Produced by Deep-Sea Bacteria: Impact on Their Stability and Degradation

    Directory of Open Access Journals (Sweden)

    Sylvia Colliec-Jouault

    2011-02-01

    Full Text Available Polysaccharides are highly heat-sensitive macromolecules, so high temperature treatments are greatly destructive and cause considerable damage, such as a great decrease in both viscosity and molecular weight of the polymer. The technical feasibility of the production of exopolysaccharides by deep-sea bacteria Vibrio diabolicus and Alteromonas infernus was previously demonstrated using a bioproduct manufacturing process. The objective of this study was to determine which sterilization method, other than heat sterilization, was the most appropriate for these marine exopolysaccharides and was in accordance with bioprocess engineering requirements. Chemical sterilization using low-temperature ethylene oxide and a mixture of ionized gases (plasmas was compared to the sterilization methods using gamma and beta radiations. The changes to both the physical and chemical properties of the sterilized exopolysaccharides were analyzed. The use of ethylene oxide can be recommended for the sterilization of polysaccharides as a weak effect on both rheological and structural properties was observed. This low-temperature gas sterilizing process is very efficient, giving a good Sterility Assurance Level (SAL, and is also well suited to large-scale compound manufacturing in the pharmaceutical industry.

  11. Enzymes for Degradation of Energetic Materials and Demilitarization of Explosives Stockpiles - SERDP Annual (Interim) Report, 12/98

    Energy Technology Data Exchange (ETDEWEB)

    Shah, M.M.

    1999-01-18

    The current stockpile of energetic materials requiring disposal contains about half a million tons. Through 2001, over 2.1 million tons are expected to pass through the stockpile for disposal. Safe and environmentally acceptable methods for disposing of these materials are needed. This project is developing safe, economical, and environmentally sound processes using biocatalyst (enzymes) to degrade energetic materials and to convert them into economically valuable products. Alternative methods for destroying these materials are hazardous, environmentally unacceptable, and expensive. These methods include burning, detonation, land and sea burial, treatment at high temperature and pressure, and treatment with harsh chemicals. Enzyme treatment operates at room temperature and atmospheric pressure in a water solution.

  12. Identification and characterization of carbosulfan degrading bacteria from different areas of Punjab

    International Nuclear Information System (INIS)

    Eight different strains (BCTL 202-209) having specific ability to degrade and utilize carbofuran insecticide for their growth, were isolated from different areas of Punjab. The optical pH and temperature of the selected bacterial isolates were 6.9-7 and 30-40 deg. C, respectively. The growth patterns of these isolates were studied on LB and M9 + glucose (50 mg/100 ml), M9 + carbosulfan (5 mg/l) medium. Typical growths patterns were observed in LB medium, where as prolong log or stationary phase were noted in M9 medium. On the basis of biochemical analysis these strains were belong to genus Planococcus, Marinococcus, Sporosarcina, Bacillus, Enterococcus and Micrococcus. All these strains showed resistance against heavy metal like Hg/sup +2/, Co/sup +2/, Cr/sup +3/ and Cu/sup +2/. The antibiotic sensitivity of the isolates were also checked against nine different antibiotics. These isolates showed resistance against ampicillin, furazolidone, and fusidic acid. These isolated can be employed in the microbe based bioremediation of insecticide contaminated soil and waste water. (author)

  13. Influence of forage phenolics on ruminal fibrolytic bacteria and in vitro fiber degradation.

    Science.gov (United States)

    Varel, V H; Jung, H J

    1986-08-01

    In vitro cultures of ruminal microorganisms were used to determine the effect of cinnamic acid and vanillin on the digestibility of cellulose and xylan. Cinnamic acid and vanillin depressed in vitro dry matter disappearance of cellulose 14 and 49%, respectively, when rumen fluid was the inoculum. The number of viable Bacteroides succinogenes cells, the predominant cellulolytic organism, was threefold higher for fermentations which contained vanillin than for control fermentations. When xylan replaced cellulose as the substrate, a 14% decrease in the digestibility of xylan was observed with vanillin added; however, the number of viable xylanolytic bacteria cultured from the batch fermentation was 10-fold greater than that of control fermentations. The doubling time of B. succinogenes was increased from 2.32 to 2.58 h when vanillin was added to cellobiose medium, and absorbance was one-half that of controls after 18 h. The growth rate of Ruminococcus albus and Ruminococcus flavefaciens was inhibited more by p-coumaric acid than by vanillin, although no reduction of final absorbance was observed in their growth cycles. Vanillin, and to a lesser extent cinnamic acid, appeared to prevent the attachment of B. succinogenes cells to cellulose particles, but did not affect dissociation of cells from the particles. B. succinogenes, R. albus, R. flavefaciens, and Butyrivibrio fibrisolvens all modified the parent monomers cinnamic acid, p-coumaric acid, ferulic acid, and vanillin, with B. fibrisolvens causing the most extensive modification. These results suggest that phenolic monomers can inhibit digestibility of cellulose and xylan, possibly by influencing attachment of the fibrolytic microorganisms to fiber particles. The reduced bacterial attachment to structural carbohydrates in the presence of vanillin may generate more free-floating fibrolytic organisms, thus giving a deceptively higher viable count.

  14. A Survey of Deepwater Horizon (DWH Oil-Degrading Bacteria from the Eastern Oyster Biome and its Surrounding Environment

    Directory of Open Access Journals (Sweden)

    Jesse eThomas

    2014-04-01

    Full Text Available The Deepwater Horizon (DWH accident led to the release of an estimated 794,936,474 liters of crude oil into the northern Gulf of Mexico over an 85 day period in 2010, resulting in the contamination of the Gulf of Mexico waters, sediments, permeable beach sands, coastal wetlands and marine life. This study examines the potential response of the Eastern oyster’s microbiome to hydrocarbon contamination and compares it with the bacterial community responses observed from the overlaying water column and the oyster bed sediments. For this purpose, microcosms seeded with DWH crude oil were established and inoculated separately with oyster tissue (OT, mantle fluid (MF, overlaying water column (WC and sediments (S collected from Apalachicola Bay, FL. Shifts in the microbial community structure in the amended microcosms was monitored over a 3-month period using automated ribosomal intergenic spacer region analysis (ARISA, which showed that the microbiome of the oyster tissue and mantle fluid were more similar to the sediment communities than those present in the overlaying water column. This pattern remained largely consistent, regardless of the concentration of crude oil or the enrichment period. Additionally, 72 oil-degrading bacteria were isolated from the microcosms containing OT, MF, WC and S and identified using 16S ribosomal RNA (rRNA gene sequencing and compared by principal component analysis (PCA which clearly showed that the water column isolates were different to those identified from the sediment. Conversely, the oyster tissue and mantle fluid isolates clustered together; a strong indication that the oyster microbiome is uniquely structured relative to its surrounding environment. When selected isolates from the OT, MF, WC and S were assessed for their oil-degrading potential, we found that the DWH oil was biodegraded between 12%-42%, under the existing conditions.

  15. Xylan utilization in human gut commensal bacteria is orchestrated by unique modular organization of polysaccharide-degrading enzymes

    KAUST Repository

    Zhang, Meiling

    2014-08-18

    Enzymes that degrade dietary and host-derived glycans represent the most abundant functional activities encoded by genes unique to the human gut microbiome. However, the biochemical activities of a vast majority of the glycan-degrading enzymes are poorly understood. Here, we use transcriptome sequencing to understand the diversity of genes expressed by the human gut bacteria Bacteroides intestinalis and Bacteroides ovatus grown in monoculture with the abundant dietary polysaccharide xylan. The most highly induced carbohydrate active genes encode a unique glycoside hydrolase (GH) family 10 endoxylanase (BiXyn10A or BACINT-04215 and BACOVA-04390) that is highly conserved in the Bacteroidetes xylan utilization system. The BiXyn10A modular architecture consists of a GH10 catalytic module disrupted by a 250 amino acid sequence of unknown function. Biochemical analysis of BiXyn10A demonstrated that such insertion sequences encode a new family of carbohydrate-binding modules (CBMs) that binds to xy-lose- configured oligosaccharide/polysaccharide ligands, the substrate of the BiXyn10A enzymatic activity. The crystal structures of CBM1 from BiXyn10A (1.8 Å), a cocomplex of BiXyn10A CBM1 with xylohexaose (1.14 Å), and the CBM fromits homolog in the Prevotella bryantii B 14 Xyn10C (1.68 Å) reveal an unanticipated mode for ligand binding. Aminimal enzyme mix, composed of the gene products of four of the most highly up-regulated genes during growth on wheat arabinoxylan, depolymerizes the polysaccharide into its component sugars. The combined biochemical and biophysical studies presented here provide a framework for understanding fiber metabolism by an important group within the commensal bacterial population known to influence human health.

  16. Microbial oil-degradation under mild hydrostatic pressure (10 MPa): which pathways are impacted in piezosensitive hydrocarbonoclastic bacteria?

    Science.gov (United States)

    Scoma, Alberto; Barbato, Marta; Hernandez-Sanabria, Emma; Mapelli, Francesca; Daffonchio, Daniele; Borin, Sara; Boon, Nico

    2016-01-01

    Oil spills represent an overwhelming carbon input to the marine environment that immediately impacts the sea surface ecosystem. Microbial communities degrading the oil fraction that eventually sinks to the seafloor must also deal with hydrostatic pressure, which linearly increases with depth. Piezosensitive hydrocarbonoclastic bacteria are ideal candidates to elucidate impaired pathways following oil spills at low depth. In the present paper, we tested two strains of the ubiquitous Alcanivorax genus, namely A. jadensis KS_339 and A. dieselolei KS_293, which is known to rapidly grow after oil spills. Strains were subjected to atmospheric and mild pressure (0.1, 5 and 10 MPa, corresponding to a depth of 0, 500 and 1000 m, respectively) providing n-dodecane as sole carbon source. Pressures equal to 5 and 10 MPa significantly lowered growth yields of both strains. However, in strain KS_293 grown at 10 MPa CO2 production per cell was not affected, cell integrity was preserved and PO4(3-) uptake increased. Analysis of its transcriptome revealed that 95% of its genes were downregulated. Increased transcription involved protein synthesis, energy generation and respiration pathways. Interplay between these factors may play a key role in shaping the structure of microbial communities developed after oil spills at low depth and limit their bioremediation potential. PMID:27020120

  17. Microbial oil-degradation under mild hydrostatic pressure (10 MPa): which pathways are impacted in piezosensitive hydrocarbonoclastic bacteria?

    Science.gov (United States)

    Scoma, Alberto; Barbato, Marta; Hernandez-Sanabria, Emma; Mapelli, Francesca; Daffonchio, Daniele; Borin, Sara; Boon, Nico

    2016-03-01

    Oil spills represent an overwhelming carbon input to the marine environment that immediately impacts the sea surface ecosystem. Microbial communities degrading the oil fraction that eventually sinks to the seafloor must also deal with hydrostatic pressure, which linearly increases with depth. Piezosensitive hydrocarbonoclastic bacteria are ideal candidates to elucidate impaired pathways following oil spills at low depth. In the present paper, we tested two strains of the ubiquitous Alcanivorax genus, namely A. jadensis KS_339 and A. dieselolei KS_293, which is known to rapidly grow after oil spills. Strains were subjected to atmospheric and mild pressure (0.1, 5 and 10 MPa, corresponding to a depth of 0, 500 and 1000 m, respectively) providing n-dodecane as sole carbon source. Pressures equal to 5 and 10 MPa significantly lowered growth yields of both strains. However, in strain KS_293 grown at 10 MPa CO2 production per cell was not affected, cell integrity was preserved and PO43‑ uptake increased. Analysis of its transcriptome revealed that 95% of its genes were downregulated. Increased transcription involved protein synthesis, energy generation and respiration pathways. Interplay between these factors may play a key role in shaping the structure of microbial communities developed after oil spills at low depth and limit their bioremediation potential.

  18. Microbial oil-degradation under mild hydrostatic pressure (10 MPa): which pathways are impacted in piezosensitive hydrocarbonoclastic bacteria?

    KAUST Repository

    Scoma, Alberto

    2016-03-29

    Oil spills represent an overwhelming carbon input to the marine environment that immediately impacts the sea surface ecosystem. Microbial communities degrading the oil fraction that eventually sinks to the seafloor must also deal with hydrostatic pressure, which linearly increases with depth. Piezosensitive hydrocarbonoclastic bacteria are ideal candidates to elucidate impaired pathways following oil spills at low depth. In the present paper, we tested two strains of the ubiquitous Alcanivorax genus, namely A. jadensis KS_339 and A. dieselolei KS_293, which is known to rapidly grow after oil spills. Strains were subjected to atmospheric and mild pressure (0.1, 5 and 10 MPa, corresponding to a depth of 0, 500 and 1000 m, respectively) providing n-dodecane as sole carbon source. Pressures equal to 5 and 10 MPa significantly lowered growth yields of both strains. However, in strain KS_293 grown at 10 MPa CO2 production per cell was not affected, cell integrity was preserved and PO43− uptake increased. Analysis of its transcriptome revealed that 95% of its genes were downregulated. Increased transcription involved protein synthesis, energy generation and respiration pathways. Interplay between these factors may play a key role in shaping the structure of microbial communities developed after oil spills at low depth and limit their bioremediation potential.

  19. Diversity and abundance of n-alkane degrading bacteria in the near surface soils of a Chinese onshore oil and gas field

    Science.gov (United States)

    Xu, K.; Tang, Y.; Ren, C.; Zhao, K.; Sun, Y.

    2012-10-01

    Alkane degrading bacteria have long been used as an important biological indicator for oil and gas prospecting, but their ecological characteristics in hydrocarbon microseep habitats are still poorly understood. In this study, the diversity and abundance of n-alkane degrading bacterial community in the near surface soils of a Chinese onshore oil and gas field were investigated using molecular techniques. Terminal restriction fragment length polymorphism (T-RFLP) analyses in combination with cloning and sequencing of alkB genes revealed that trace amount of volatile hydrocarbons migrated from oil and gas reservoirs caused a shift of the n-alkane degrading bacterial community from Gram-positive bacteria (Mycobacterium and Rhodococcus) to Gram-negative genotypes (Alcanivorax and Acinetobacter). Real-time PCR results furthermore showed that the abundance of alkB genes increased substantially in the surface soils underlying oil and gas reservoirs even though only low or undetectable concentrations of hydrocarbons were measured in these soils due to efficient microbial degradation. Our findings broadened the knowledge on the ecological characteristics of alkane degrading community in hydrocarbon microseeps and may provide a new approach for microbial prospecting for oil and gas (MPOG).

  20. Diversity and abundance of n-alkane degrading bacteria in the near surface soils of a Chinese onshore oil and gas field

    Directory of Open Access Journals (Sweden)

    K. Zhao

    2012-10-01

    Full Text Available Alkane degrading bacteria have long been used as an important biological indicator for oil and gas prospecting, but their ecological characteristics in hydrocarbon microseep habitats are still poorly understood. In this study, the diversity and abundance of n-alkane degrading bacterial community in the near surface soils of a Chinese onshore oil and gas field were investigated using molecular techniques. Terminal restriction fragment length polymorphism (T-RFLP analyses in combination with cloning and sequencing of alkB genes revealed that trace amount of volatile hydrocarbons migrated from oil and gas reservoirs caused a shift of the n-alkane degrading bacterial community from Gram-positive bacteria (Mycobacterium and Rhodococcus to Gram-negative genotypes (Alcanivorax and Acinetobacter. Real-time PCR results furthermore showed that the abundance of alkB genes increased substantially in the surface soils underlying oil and gas reservoirs even though only low or undetectable concentrations of hydrocarbons were measured in these soils due to efficient microbial degradation. Our findings broadened the knowledge on the ecological characteristics of alkane degrading community in hydrocarbon microseeps and may provide a new approach for microbial prospecting for oil and gas (MPOG.

  1. Primary explosives

    Energy Technology Data Exchange (ETDEWEB)

    Matyas, Robert; Pachman, Jiri [Pardubice Univ. (Czech Republic). Faculty of Chemical Technology

    2013-06-01

    The first chapter provides background such as the basics of initiation and differences between requirements on primary explosives used in detonators and igniters. The authors then clarify the influence of physical characteristics on explosive properties, focusing on those properties required for primary explosives. Furthermore, the issue of sensitivity is discussed. All the chapters on particular groups of primary explosives are structured in the same way, including introduction, physical and chemical properties, explosive properties, preparation and documented use.

  2. MALDI-TOF MS analysis of ribosomal proteins coded in S10 and spc operons rapidly classified the Sphingomonadaceae as alkylphenol polyethoxylate-degrading bacteria from the environment.

    Science.gov (United States)

    Hotta, Yudai; Sato, Hiroaki; Hosoda, Akifumi; Tamura, Hiroto

    2012-05-01

    Matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) using ribosomal subunit proteins coded in the S10-spc-alpha operon as biomarkers was applied for the classification of the Sphingomonadaceae from the environment. To construct a ribosomal protein database, S10-spc-alpha operon of type strains of the Sphingomonadaceae and their related alkylphenol polyethoxylate (APEO(n) )-degrading bacteria were sequenced using specific primers designed based on nucleotide sequences of genome-sequenced strains. The observed MALDI mass spectra of intact cells were compared with the theoretical mass of the constructed ribosomal protein database. The nine selected biomarkers coded in the S10-spc-alpha operon, L18, L22, L24, L29, L30, S08, S14, S17, and S19, could successfully distinguish the Sphingopyxis terrae NBRC 15098(T) and APEO(n) -degrading bacteria strain BSN20, despite only one base difference in the 16S rRNA gene sequence. This method, named the S10-GERMS (S10-spc-alpha operon gene-encoded ribosomal protein mass spectrum) method, is a significantly useful tool for bacterial discrimination of the Sphingomonadaceae at the strain level and can detect and monitor the main APEO(n) -degrading bacteria in the environment.

  3. Isolation of isoprene degrading bacteria from soils, development of isoA gene probes and identification of the active isoprene-degrading soil community using DNA-stable isotope probing.

    Science.gov (United States)

    El Khawand, Myriam; Crombie, Andrew T; Johnston, Antonia; Vavlline, Dmitrii V; McAuliffe, Joseph C; Latone, Jacob A; Primak, Yuliya A; Lee, Sang-Kyu; Whited, Gregg M; McGenity, Terry J; Murrell, J Colin

    2016-09-01

    Emissions of biogenic volatile organic compounds (bVOCs), are an important element in the global carbon cycle, accounting for a significant proportion of fixed carbon. They contribute directly and indirectly to global warming and climate change and have a major effect on atmospheric chemistry. Plants emit isoprene to the atmosphere in similar quantities to emissions of methane from all sources and each accounts for approximately one third of total VOCs. Although methanotrophs, capable of growth on methane, have been intensively studied, we know little of isoprene biodegradation. Here, we report the isolation of two isoprene-degrading strains from the terrestrial environment and describe the design and testing of polymerase chain reaction (PCR) primers targeting isoA, the gene encoding the active-site component of the conserved isoprene monooxygenase, which are capable of retrieving isoA sequences from isoprene-enriched environmental samples. Stable isotope probing experiments, using biosynthesized (13) C-labelled isoprene, identified the active isoprene-degrading bacteria in soil. This study identifies novel isoprene-degrading strains using both culture-dependent and, for the first time, culture-independent methods and provides the tools and foundations for continued investigation of the biogeography and molecular ecology of isoprene-degrading bacteria. PMID:27102583

  4. Prevalence of the gene trzN and biogeographic patterns among atrazine-degrading bacteria isolated from 13 Colombian agricultural soils.

    Science.gov (United States)

    Arbeli, Ziv; Fuentes, Cilia

    2010-09-01

    The following study evaluated the diversity and biogeography of 83 new atrazine-degrading bacteria and the composition of their atrazine degradation genes. These strains were isolated from 13 agricultural soils and grouped according to rep-PCR genomic fingerprinting into 11 major clusters, which showed biogeographic patterns. Three clusters (54 strains) belonged to the genus Arthrobacter, seven clusters (28 strains) were similar to the genus Nocardioides and only one strain was a gram-negative from the genus Ancylobacter. PCR assays for the detection of the genes atzA, B, C, D, E, F and trzN conducted with each of the 83 strains revealed that 82 strains (all gram positive) possessed trzN, 74 of them possessed the combination of trzN, atzB and atzC, while only the gram-negative strain had atzA. A similar PCR assay for the two analogous genes, atzA and trzN, responsible for the first step of atrazine degradation, was performed with DNA extracted directly from the enrichment cultures and microcosms spiked with atrazine. In these assays, the gene trzN was detected in each culture, while atzA was detected in only six out of 13 soils. These results raise an interesting hypothesis on the evolutionary ecology of the two atrazine chlorohydrolase genes (i.e. atzA and trzN) and about the biogeography of atrazine-degrading bacteria. PMID:20597985

  5. 一株纤维素降解菌的筛选与鉴定%Screening and Identification of Cellulose Degradation Bacteria

    Institute of Scientific and Technical Information of China (English)

    李艳红

    2012-01-01

    12 cellulose-degrading bacterias were enriched and isolated from the leaves of the humus layer covering the soil and a high-degrading bacteria ( X10 ) was selected from these. The optimal culture conditions of the bacteria were as follows : took the culture medium containing glucose+micrlte cellulose (1:1)as carbon sources, peptone+beef( 1:1 )as nitrogen sources, pH 7.5, under 30℃, with the culture time was 40 b, the cellulose-degrading enzyme activity was up to 57.44 U.Through its 16s rRNA sequencing,the homology of bacteria and Microbacterium oxydans were 99%.The selection of cellulose-degrading bacteria provided a new source of bacteria for the egiciem production of cellulase.%从落叶覆盖的腐殖层土壤中富集、分离得到12株纤维素降解菌,从中筛选出一株高效降解菌(X10),研究其最适宜的培养条件为:配制以葡萄糖+微晶纤维隶(1:1)为碳源、以蛋白胨+牛肉膏(1:1)为氮源的培养基,pH值7.5,30℃下培养40h,测得纤维素降解酶酶活可达到67.44U。通过对其16srRNA测序鉴定,该菌与氧化微杆菌(Microbacterium oxydans)有99%的同源性。纤维素降解菌的选育可为高效生产纤维素酶提供新的菌种来源。

  6. Bioremediation of coastal areas 5 years after the Nakhodka oil spill in the Sea of Japan: isolation and characterization of hydrocarbon-degrading bacteria

    International Nuclear Information System (INIS)

    Five years after the 1997 Nakhodka oil spill in the Sea of Japan, seven bacterial strains capable of utilizing the heavy oil spilled from the Nakhodka Russian oil tanker were isolated from three coastal areas (namely Katano Seashore of Fukui Prefecture, Osawa and Atake seashores of Ishikawa Prefecture) and the Nakhodka Russian oil tanker after a 5-year bioremediation process. All bacterial strains isolated could utilize long-chain-length alkanes efficiently, but not aromatic, and all of them were able to grow well on heavy oil. Using 16S rDNA sequencing, most of the strains were affiliated to Pseudomonas aeruginosa. Comparing between the year 1997 (at the beginning of bioremediation process) and the year 2001 (after 5 years of bioremediation), there was no significant change in morphology and size of hydrocarbon-degrading bacteria during the 5-year bioremediation. Scanning and transmission electron microscopic observations revealed that a large number of hydrocarbon- degrading bacteria still existed in the sites consisting of a variety of morphological forms of bacteria, such as coccus (Streptococcus and Staphylococcus) and bacillus (Streptobacillus). On the application of bioremediation processes on the laboratory-scale, laboratory microcosm experiments (containing seawater, beach sand, and heavy oil) under aerobic condition by two different treatments (i.e., placed inside the building and outside the building) were established for bioremediation of heavy oil to investigate the significance of the role of hydrocarbon-degrading bacteria on them. There was no significant bacterial activity differentiation in the two treatments, and removal of heavy oil by hydrocarbon degrading bacteria in the outside building was slightly greater than that in the inside building. The values of pH, Eh, EC, and dissolved oxygen (DO) in two treatments indicated that the bioremediation process took place under aerobic conditions (DO: 1-6 mg/l; Eh: 12-300 mV) and neutral

  7. Optimal Cultivation Time for Yeast and Lactic Acid Bacteria in Fermented Milk and Effects of Fermented Soybean Meal on Rumen Degradability Using Nylon Bag Technique

    Science.gov (United States)

    Polyorach, S.; Poungchompu, O.; Wanapat, M.; Kang, S.; Cherdthong, A.

    2016-01-01

    The objectives of this study were to determine an optimal cultivation time for populations of yeast and lactic acid bacteria (LAB) co-cultured in fermented milk and effects of soybean meal fermented milk (SBMFM) supplementation on rumen degradability in beef cattle using nylon bag technique. The study on an optimal cultivation time for yeast and LAB growth in fermented milk was determined at 0, 4, 8, 24, 48, 72, and 96 h post-cultivation. After fermenting for 4 days, an optimal cultivation time of yeast and LAB in fermented milk was selected and used for making the SBMFM product to study nylon bag technique. Two ruminal fistulated beef cattle (410±10 kg) were used to study on the effect of SBMFM supplementation (0%, 3%, and 5% of total concentrate substrate) on rumen degradability using in situ method at incubation times of 0, 2, 4, 6, 12, 24, 48, and 72 h according to a Completely randomized design. The results revealed that the highest yeast and LAB population culture in fermented milk was found at 72 h-post cultivation. From in situ study, the soluble fractions at time zero (a), potential degradability (a+b) and effective degradability of dry matter (EDDM) linearly (pcultivation and supplementation of SBMFM at 5% of total concentrate substrate could improve rumen degradability of beef cattle. However, further research on effect of SBMFM on rumen ecology and production performance in meat and milk should be conducted using in vivo both digestion and feeding trials. PMID:26954119

  8. Cultural condition regulations for three lignin degrading bacteria%3株细菌降解木质素的条件调控研究

    Institute of Scientific and Technical Information of China (English)

    张欢; 柴立元; 朱咏华; 陈跃辉; 靳冉

    2011-01-01

    采用苯胺蓝和RB亮蓝平板对从三国吴简腐蚀斑中分离得到的3株细菌Acinetobacter sp.B-2,Pandoraea sp.B-6和Novosphingobium sp.B-7进行脱色试验,考察这3株细菌在液体培养条件下的木质素降解性能,并对其木质素降解条件的调控进行研究,初步确定这3株菌适宜的降解条件.研究结果表明:这3株细菌具有使苯胺蓝和RB亮蓝染料脱色的能力,能够产木质素降解酶;这3株细菌的木质素降解速率较快,第5天木质素的降解基本趋于稳定;菌株适宜的降解条件如下:对Acinetobacter sp.B-2,氮源为硝酸铵,氮源浓度为0.01 mol/L,培养温度为30℃,初始pH=7.0,摇床转速为120 r/min;对Pandoraea sp.B-6,氮源为磷酸氢二铵,氮源浓度为0.03 mol/L,培养温度为30℃,初始pH=7.0,摇床转速为120 r/min;对Novosphingobium sp.B-7,氮源为硝酸铵,氮源浓度为0.01 mol/L,培养温度为30℃,初始pH为5.0,摇床转速为120 r/min.在适宜的降解条件下,这3株细菌第3天的木质素降解率均可达到30%~35%.%The decolorizing reactions of three bacteria were studied through Azure-B and Remazol Brilliant Blue dye plate, which were isolated from erosive bamboo slips of Kingdom Wu, identified as Acinetobacter sp. B-2, Pandoraea sp. B-6 and Novosphingobium sp. B-7, respectively. The lignin degrading characteristics of three bacteria were investigated in the liquid medium. The effects of culture conditions on lignin degrading ability of the three bacteria were also studied, and the appropriate culture conditions were determined. The results show that three bacteria can decolorize Azure-B and Remazol Brilliant Blue dye and produce ligninolytic enzyme. Three bacteria can degrade lignin very well with a relatively high degrading rate, and the plateau of degradation is observed after 5 d incubation. Appropriate culture conditions for Acinetobacter sp. B-2 are achieved as follows: NH4NO3 nitrogen source, 0.01 mol/L of nitrogen source

  9. Hydrocarbon-Degrading Bacteria and Paraffin from Polluted Seashores 9 Years after the Nakhodka Oil Spill in the Sea of Japan

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Pollution of petroleum hydrocarbons, in particular oil spills, has attracted much attention in the past and recent decades. Oil spills influence natural microbial community, and physical and chemical properties of the affected sites. The biodegradation of hydrocarbons by microorganisms is one of the primary ways by which oil spill is eliminated from contaminated sites. One such spill was that of the Russian tanker the Nakhodka that spilled heavy oil into the Sea of Japan on January 2, 1997. The impact of the Nakhodka oil spill resulted in a viscous sticky fluid fouling the shores and affected natural ecosystems. This paper describes the weathering of hydrocarbon-degrading bacteria (genus Pseudomonas) and crystallized organic compounds from the Nakhodka oil spill-polluted seashores after nine years. The Nakhodka oil has hardened and formed crust of crystalline paraffin wax as shown by XRD analysis (0.422, 0.377, and 0.250 nm d-spacing) in association with graphite and calcite after 9years of bioremediation. Anaerobic reverse side of the oil crust contained numerous coccus typed bacteria associated with halite. The finding of hydrocarbon-degrading bacteria and paraffin wax in the oil crust may have a significant effect on the weathering processes of the Nakhodka oil spill during the 9-year bioremediation.

  10. Diversity and abundance of n-alkane-degrading bacteria in the near-surface soils of a Chinese onshore oil and gas field

    Science.gov (United States)

    Xu, K.; Tang, Y.; Ren, C.; Zhao, K.; Sun, Y.

    2013-03-01

    Alkane-degrading bacteria have long been used as an important biological indicator for oil and gas prospecting, but their ecological characteristics in hydrocarbon microseep habitats are still poorly understood. In this study, the diversity and abundance of n-alkane-degrading bacterial community in the near-surface soils of a Chinese onshore oil and gas field were investigated using molecular techniques. Terminal restriction fragment length polymorphism (T-RFLP) analyses in combination with cloning and sequencing of alkB genes revealed that Gram-negative genotypes (Alcanivorax and Acinetobacter) dominated n-alkane-degrading bacterial communities in the near-surface soils of oil and gas reservoirs, while the dominant microbial communities were Gram-positive bacteria (Mycobacterium and Rhodococcus) in background soil. Real-time quantitative polymerase chain reaction (PCR) results furthermore showed that the abundance of alkB genes increased substantially in the surface soils above oil and gas reservoirs even though only low or undetectable concentrations of hydrocarbons were measured in these soils. The results of this study implicate that trace amounts of volatile hydrocarbons migrate from oil and gas reservoirs, and likely result in the changes of microbial communities in the near-surface soil.

  11. Diversity and abundance of n-alkane-degrading bacteria in the near-surface soils of a Chinese onshore oil and gas field

    Directory of Open Access Journals (Sweden)

    K. Xu

    2013-03-01

    Full Text Available Alkane-degrading bacteria have long been used as an important biological indicator for oil and gas prospecting, but their ecological characteristics in hydrocarbon microseep habitats are still poorly understood. In this study, the diversity and abundance of n-alkane-degrading bacterial community in the near-surface soils of a Chinese onshore oil and gas field were investigated using molecular techniques. Terminal restriction fragment length polymorphism (T-RFLP analyses in combination with cloning and sequencing of alkB genes revealed that Gram-negative genotypes (Alcanivorax and Acinetobacter dominated n-alkane-degrading bacterial communities in the near-surface soils of oil and gas reservoirs, while the dominant microbial communities were Gram-positive bacteria (Mycobacterium and Rhodococcus in background soil. Real-time quantitative polymerase chain reaction (PCR results furthermore showed that the abundance of alkB genes increased substantially in the surface soils above oil and gas reservoirs even though only low or undetectable concentrations of hydrocarbons were measured in these soils. The results of this study implicate that trace amounts of volatile hydrocarbons migrate from oil and gas reservoirs, and likely result in the changes of microbial communities in the near-surface soil.

  12. Cr-resistant rhizo- and endophytic bacteria associated with Prosopis juliflora and their potential as phytoremediation enhancing agents in metal-degraded soils

    Directory of Open Access Journals (Sweden)

    Muhammad Umar Khan

    2015-01-01

    Full Text Available Prosopis juliflora is characterized by distinct and profuse growth even in nutritionally poor soil and environmentally stressed conditions and is believed to harbor some novel heavy metal-resistant bacteria in the rhizosphere and endosphere. This study was performed to isolate and characterize Cr-resistant bacteria from the rhizosphere and endosphere of P. juliflora growing on the tannery effluent contaminated soil. A total of 5 and 21 bacterial strains were isolated from the rhizosphere and endosphere, respectively, could tolerate Cr up to 3000 mg l-1. These isolates also exhibited tolerance to other toxic heavy metals such as, Cd, Cu, Pb and Zn, and high concentration (174 g l-1 of NaCl. Moreover, most of the isolated bacterial strains showed one or more plant growth-promoting activities. The phylogenetic analysis of the 16S rRNA gene indicated a higher and wider range of population of Cr-resistant bacteria in the endosphere than rhizosphere and the predominant species included Bacillus, Staphylococcus and Aerococcus. As far as we know, this is the first report detecting rhizo- and endophytic bacterial population associated with P. juliflora growing on the tannery effluent contaminated soil. The inoculation of three isolates to ryegrass (Lolium multiflorum L. improved plant growth and heavy metal removal from the tannery effluent contaminated soil suggesting that these bacteria could enhance the establishment of the plant in contaminated soil and also improve the efficiency of phytoremediation of heavy metal-degraded soils.

  13. Optimization of Degradation Properties and Conditions of Oil-degrading Bacteria with Salt Tolerance%耐盐石油降解菌性能及降解条件优化

    Institute of Scientific and Technical Information of China (English)

    陈梅梅; 钱文; 田生; 刘光全; 郭耀峰

    2012-01-01

    从冀东油田钻井废液中筛选分离出耐盐石油降解菌Virgibacillus sp.(简称SJ菌),其在高含盐条件下对石油具有较好的降解效果,高达56.12%左右.考察了pH值、盐度、不同N和P形态等因素对SJ菌降解石油效果的影响.结果表明:SJ菌有较宽的pH值适应范围(pH值为6~10)和较好的耐盐能力(0.5%~20%),在pH值为9及NaCI质量浓度为5%时对石油类降解效果最好,其最佳利用N源和P源分别为(NH2)2CO和KH2PO4,该研究为油田高含盐含油废液处理提供了一条新途径.%Oil-degrading bacteria Virgibacillus sp (referred to as SJ bacteria) with high salt tolerance was isolated from drilling wastewater of Jidong Oilfield. It had a good degradation effect, up to about 56.12% on oil in high salt concentration conditions. This paper studied the impact of pH, salt concentration, and different nitrogen and phosphorus forms on oil degradation effects of SJ bacteria. The results showed that SJ bacteria had a wide pH range (pH 6 to 10) and a good salt tolerance (0. 5% to 20%) Oil degradation rate was the highest at pH 9 and NaCl concentration of 5%. ( NH2)2CO and KH2PO4 were the best N and P sources for SJ strain. Therefore this research supplied a new way for the treatment of oil wastewater with high salt concentration in the oilfield.

  14. Genetic and phenotypic diversity of 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils.

    OpenAIRE

    Ka, J O; Holben, W E; Tiedje, J M

    1994-01-01

    Forty-seven numerically dominant 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria were isolated at different times from 1989 through 1992 from eight agricultural plots (3.6 by 9.1 m) which were either not treated with 2,4-D or treated with 2,4-D at three different concentrations. Isolates were obtained from the most dilute positive most-probable-number tubes inoculated with soil samples from the different plots on seven sampling dates over the 3-year period. The isolates were compare...

  15. Restoration of Degraded Soil in the Nanmangalam Reserve Forest with Native Tree Species: Effect of Indigenous Plant Growth-Promoting Bacteria

    Directory of Open Access Journals (Sweden)

    Andimuthu Ramachandran

    2016-01-01

    Full Text Available Restoration of a highly degraded forest, which had lost its natural capacity for regeneration, was attempted in the Nanmangalam Reserve Forest in Eastern Ghats of India. In field experiment, 12 native tree species were planted. The restoration included inoculation with a consortium of 5 native plant growth-promoting bacteria (PGPB, with the addition of small amounts of compost and a chemical fertilizer (NPK. The experimental fields were maintained for 1080 days. The growth and biomass varied depending on the plant species. All native plants responded well to the supplementation with the native PGPB. The plants such as Pongamia pinnata, Tamarindus indica, Gmelina arborea, Wrightia tinctoria, Syzygium cumini, Albizia lebbeck, Terminalia bellirica, and Azadirachta indica performed well in the native soil. This study demonstrated, by using native trees and PGPB, a possibility to restore the degraded forest.

  16. Restoration of Degraded Soil in the Nanmangalam Reserve Forest with Native Tree Species: Effect of Indigenous Plant Growth-Promoting Bacteria

    Science.gov (United States)

    Ramachandran, Andimuthu; Radhapriya, Parthasarathy

    2016-01-01

    Restoration of a highly degraded forest, which had lost its natural capacity for regeneration, was attempted in the Nanmangalam Reserve Forest in Eastern Ghats of India. In field experiment, 12 native tree species were planted. The restoration included inoculation with a consortium of 5 native plant growth-promoting bacteria (PGPB), with the addition of small amounts of compost and a chemical fertilizer (NPK). The experimental fields were maintained for 1080 days. The growth and biomass varied depending on the plant species. All native plants responded well to the supplementation with the native PGPB. The plants such as Pongamia pinnata, Tamarindus indica, Gmelina arborea, Wrightia tinctoria, Syzygium cumini, Albizia lebbeck, Terminalia bellirica, and Azadirachta indica performed well in the native soil. This study demonstrated, by using native trees and PGPB, a possibility to restore the degraded forest. PMID:27195310

  17. Restoration of Degraded Soil in the Nanmangalam Reserve Forest with Native Tree Species: Effect of Indigenous Plant Growth-Promoting Bacteria.

    Science.gov (United States)

    Ramachandran, Andimuthu; Radhapriya, Parthasarathy

    2016-01-01

    Restoration of a highly degraded forest, which had lost its natural capacity for regeneration, was attempted in the Nanmangalam Reserve Forest in Eastern Ghats of India. In field experiment, 12 native tree species were planted. The restoration included inoculation with a consortium of 5 native plant growth-promoting bacteria (PGPB), with the addition of small amounts of compost and a chemical fertilizer (NPK). The experimental fields were maintained for 1080 days. The growth and biomass varied depending on the plant species. All native plants responded well to the supplementation with the native PGPB. The plants such as Pongamia pinnata, Tamarindus indica, Gmelina arborea, Wrightia tinctoria, Syzygium cumini, Albizia lebbeck, Terminalia bellirica, and Azadirachta indica performed well in the native soil. This study demonstrated, by using native trees and PGPB, a possibility to restore the degraded forest. PMID:27195310

  18. Assessing the hydrocarbon degrading potential of indigenous bacteria isolated from crude oil tank bottom sludge and hydrocarbon-contaminated soil of Azzawiya oil refinery, Libya.

    Science.gov (United States)

    Mansur, Abdulatif A; Adetutu, Eric M; Kadali, Krishna K; Morrison, Paul D; Nurulita, Yuana; Ball, Andrew S

    2014-09-01

    The disposal of hazardous crude oil tank bottom sludge (COTBS) represents a significant waste management burden for South Mediterranean countries. Currently, the application of biological systems (bioremediation) for the treatment of COTBS is not widely practiced in these countries. Therefore, this study aims to develop the potential for bioremediation in this region through assessment of the abilities of indigenous hydrocarbonoclastic microorganisms from Libyan Hamada COTBS for the biotreatment of Libyan COTBS-contaminated environments. Bacteria were isolated from COTBS, COTBS-contaminated soil, treated COTBS-contaminated soil, and uncontaminated soil using Bushnell Hass medium amended with Hamada crude oil (1 %) as the main carbon source. Overall, 49 bacterial phenotypes were detected, and their individual abilities to degrade Hamada crude and selected COBTS fractions (naphthalene, phenanthrene, eicosane, octadecane and hexane) were evaluated using MT2 Biolog plates. Analyses using average well colour development showed that ~90 % of bacterial isolates were capable of utilizing representative aromatic fractions compared to 51 % utilization of representative aliphatics. Interestingly, more hydrocarbonoclastic isolates were obtained from treated contaminated soils (42.9 %) than from COTBS (26.5 %) or COTBS-contaminated (30.6 %) and control (0 %) soils. Hierarchical cluster analysis (HCA) separated the isolates into two clusters with microorganisms in cluster 2 being 1.7- to 5-fold better at hydrocarbon degradation than those in cluster 1. Cluster 2 isolates belonged to the putative hydrocarbon-degrading genera; Pseudomonas, Bacillus, Arthrobacter and Brevundimonas with 57 % of these isolates being obtained from treated COTBS-contaminated soil. Overall, this study demonstrates that the potential for PAH degradation exists for the bioremediation of Hamada COTBS-contaminated environments in Libya. This represents the first report on the isolation of

  19. Enhanced Biological Trace Organic Contaminant Removal: A Lab-Scale Demonstration with Bisphenol A-Degrading Bacteria Sphingobium sp. BiD32.

    Science.gov (United States)

    Zhou, Nicolette A; Gough, Heidi L

    2016-08-01

    Discharge of trace organic contaminants (TOrCs) from wastewater treatment plants (WWTPs) may contribute to deleterious effects on aquatic life. Release to the environment occurs both through WWTP effluent discharge and runoff following land applications of biosolids. This study introduces Enhanced Biological TOrC Removal (EBTCR), which involves continuous bioaugmentation of TOrC-degrading bacteria for improved removal in WWTPs. Influence of bioaugmentation on enhanced degradation was investigated in two lab-scale sequencing batch reactors (SBRs), using bisphenol A (BPA) as the TOrC. The reactors were operated with 8 cycles per day and at two solids retention times (SRTs). Once each day, the test reactor was bioaugmented with Sphingobium sp. BiD32, a documented BPA-degrading culture. After bioaugmentation, BPA degradation (including both the dissolved and sorbed fractions) was 2-4 times higher in the test reactor than in a control reactor. Improved removal persisted for >5 cycles following bioaugmentation. By the last cycle of the day, enhanced BPA removal was lost, although it returned with the next bioaugmentation. A net loss of Sphingobium sp. BiD32 was observed in the reactors, supporting the original hypothesis that continuous bioaugmentation (rather than single-dose bioaugmentation) would be required to improve TOrCs removal during wastewater treatment. This study represents a first demonstration of a biologically based approach for enhanced TOrCs removal that both reduces concentrations in wastewater effluent and prevents transfer to biosolids. PMID:27338240

  20. Enhancing the cellulose-degrading activity of cellulolytic bacteria CTL-6 (Clostridium thermocellum) by co-culture with non-cellulolytic bacteria W2-10 (Geobacillus sp.).

    Science.gov (United States)

    Lü, Yucai; Li, Ning; Yuan, Xufeng; Hua, Binbin; Wang, Jungang; Ishii, Masaharu; Igarashi, Yasuo; Cui, Zongjun

    2013-12-01

    The effect of a non-cellulolytic bacterium W2-10 (Geobacillus sp.) on the cellulose-degrading activity of a cellulolytic bacterium CTL-6 (Clostridium thermocellum) was determined using cellulose materials (paper and straw) in peptone cellulose solution (PCS) medium under aerobic conditions. The results indicated that in the co-culture, addition of W2-10 resulted in a balanced medium pH, and may provide the required anaerobic environment for CTL-6. Overall, addition of W2-10 was beneficial to CTL-6 growth in the adverse environment of the PCS medium. In co-culture with W2-10, the CTL-6 cellulose degradation efficiency of filter paper and alkaline-treated wheat straw significantly increased up to 72.45 and 37.79 %, respectively. The CMCase activity and biomass of CTL-6 also increased from 0.23 U ml(-1) and 45.1 μg ml(-1) (DNA content) up to 0.47 U ml(-1) and 112.2 μg ml(-1), respectively. In addition, co-culture resulted in accumulation of acetate and propionate up to 4.26 and 2.76 mg ml(-1). This was a respective increase of 2.58 and 4.45 times, in comparison to the monoculture with CTL-6.

  1. Field observations on the variability of crude oil impact on indigenous hydrocarbon-degrading bacteria from sub-Antarctic intertidal sediments

    International Nuclear Information System (INIS)

    Oil pollution of the oceans has been a problem ever since man began to use fossil fuels. Biodegradation by naturally occurring populations of micro-organisms is a major mechanism for the removal of petroleum from the environment. To examine the effects of crude oil-pollution on intertidal bacteria, we repeated the same contamination experiments on nine different sub-Antarctic intertidal beaches using specifically built enclosures (PVC pipe, 15 cm in inner diameter and 30 cm in height). Despite the pristine environmental conditions, significant numbers of indigenous hydrocarbon-degrading bacteria were observed in all the studied beaches. Introduction of oil into these previously oil-free environments resulted in several orders of magnitude of increase in hydrocarbon-degrading micro-organisms within a few days in some of the studied sites but has no obvious effects on two others. The physical environment of the bacterial assemblage seems to play a major role in the biodegradation capacities. After 3 months of contamination, both remaining oil concentrations and biodegradation indexes differ strongly between the different stations. Thus, chemical and biological parameters reveal a strong heterogeneity of biodegradation capacities between the different sites. (Author)

  2. Growth kinetics and lyophilisation characteristics of a mixed population of phenol-degrading bacteria; Ueber Wachstumskinetik und Lyophilisierbarkeit einer Mischpopulation von Phenole abbauenden Bakterien

    Energy Technology Data Exchange (ETDEWEB)

    Poszich-Buscher, C.

    1993-05-01

    Reversibly inactivated microorganisms (RIM) were compared which are able to utilize the phenolic components of coking plant effluents and residues completely as a source of carbon and energy for growth. For this purpose, a mixed population of phenol-degrading bacterica - part of which come from coking residues - was cultivated in a continuously charged bioreactor with biomass recirculation in selective conditions, with phenol and cresol and xylenol isomers as the only source of carbon and energy. The degradation potential of the mixed population of bacteria was investigated as well as the applicability of this method for cultivating this mixed population of bacteria. (orig./BBR) [Deutsch] Reversibel inaktivierte Mikroorganismen (RIM), die die phenolischen Komponenten von Kokereiabwasser bzw. -altlasten vollstaendig als Kohlenstoff- und Energiequelle fuer ihr Wachstum nutzen koennen, wurden hergestellt. Dazu wurde eine phenoleabbauende Bakterienmischpopulation, die z.T. aus Kokereialtlasten stammte, in einem kontinuierlich beschickten Bioreaktor mit Biomasserueckfuehrung angezogen, und unter selektiven Bedingungen mit Phenol, den Isomeren des Kresols und des Xylenols als alleinige Kohlenstoff- und Energiequelle versorgt. Es wurde das Abbaupotential dieser Bakterienmischpopulation und die Brauchbarkeit des gewaehlten Verfahrens zur Anzucht dieser Bakterienmischpopulation untersucht. (orig./BBR)

  3. Resistance transferance of Amorimia septentrionalis poisoning in goats by ruminal transferance fluid from goats with induced resistance by the inoculation of sodium monofluoroacetate-degrading bacteria

    Directory of Open Access Journals (Sweden)

    Layze Cilmara Alves da Silva

    2015-12-01

    Full Text Available Amorimia septentrionalis is a sodium monofluoroacetate (MFA - containing plant that causes sudden death in ruminants. The aim of this study was to determine whether the resistance to A. septentrionalis poisoning in goats conferred by the intra-ruminal inoculation with the MFA-degrading bacteria Ancylobacter dichloromethanicus and Pigmentiphaga kullae can be transferred to susceptible goats by the transfaunation of rumen content. Two groups of 8 goats and 2 goats resistant to A. septentrionalis poisoning were used. Goats in Group 1 received four daily doses of 160ml of rumen content from resistant goats and subsequently ingested 8 daily doses of 5g kg-1 of A. septentrionalis. Goats from Group 2 (control received only the plant. In Group 1, only 2 goats showed mild tachycardia and mild jugular vein engorgement on the 4th and 5th day, but they subsequently returned to normal, even with the continuation of plant administration. All control goats showed severe signs of intoxication and the plant administration was suspended between the 3rd and 7th day. So, the transfer of ruminal fluid from goats previously inoculated with MFA-degrading bacteria induces resistance to poisoning by A. septentrionalis in susceptible goats.

  4. Bacterial Structure and Characterization of Plant Growth Promoting and Oil Degrading Bacteria from the Rhizospheres of Mangrove Plants

    NARCIS (Netherlands)

    do Carmo, Flavia Lima; dos Santos, Henrique Fragoso; Martins, Edir Ferreira; van Elsas, Jan Dirk; Rosado, Alexandre Soares; Peixoto, Raquel Silva

    2011-01-01

    Most oil from oceanic spills converges on coastal ecosystems, such as mangrove forests, which are threatened with worldwide disappearance. Particular bacteria that inhabit the rhizosphere of local plant species can stimulate plant development through various mechanisms; it would be advantageous if t

  5. Isolation, Identification of Chlorimuron-ethyl Degradation Bacteria and Its Degradation Characteristics%氯嘧磺隆降解细菌的分离鉴定及其降解特性

    Institute of Scientific and Technical Information of China (English)

    纪明山; 颜克成; 刘周成; 冯俊义; 黄均艳

    2012-01-01

    The aims were to solve the problem of soybean herbicide chlorimuron-ethy residues in soil for long time, and provide actinomyces source for bioremediation of soil contaminated by chlorimuron-ethy. A bacteria which was able to degrade chlorimuron-ethyl and could grow using chlorimuron-ethyl as the sole nitrogen, was isolated from the soil of applying with chlorimuron-ethyl for many years by enrichment culture, which was named SN10. Based on physiological and biochemical characteristics and 16S rRNA sequence, the strain was identified preliminarily as Bacillus cereus. The influencing factors (temperature, pH, inoculation amount and incubation time) were studied with bacteria growth mass and degradation ration as indexes. The results showed that, the optimal degradation ratio occurred at the condition of 28℃, pH 7, inoculation amount of 7%, incubation time 4 days. Under these conditions, 81.2% chlorimuron-ethyl had been degraded. By chlorimuron-ethyl degradation bacteria evaluation of the repair test, bacteria and drug treatment of maize seed germination and plant height were higher than only drug treatment, SN10 degraded obviously chlorimuron-ethyl in soil.%为了解决大豆田除草剂氯嘧磺隆在土壤中残留时间长的问题,为氯嘧磺隆污染的土壤的生物修复提供菌源,利用富集培养技术,从多年使用氯嘧磺隆的土壤中分离得到1株能以氯嘧磺隆作为唯一氮源生长的细菌,命名为SN10菌株.通过对该菌株的生理生化鉴定和16S rDNA序列分析,初步鉴定菌株SN10为蜡样芽孢杆菌(Bacillus cereus).以SN10菌体生长量、氯嘧磺隆降解率为指标,研究了(温度、pH、接菌量、培养时间)对SN10生长量和降解能力的影响.结果表明,SN10最佳生长量和降解条件为28℃,pH 7,培养时间4天,接菌量为7%,在此条件下,SN10菌株对氯嘧磺隆的降解率达到87.2%.通过氯嘧磺隆降解菌的修复效果评价试验,得出加菌加药处理组的玉米种子的

  6. Cr-resistant rhizo- and endophytic bacteria associated with Prosopis juliflora and their potential as phytoremediation enhancing agents in metal-degraded soils.

    Science.gov (United States)

    Khan, Muhammad U; Sessitsch, Angela; Harris, Muhammad; Fatima, Kaneez; Imran, Asma; Arslan, Muhammad; Shabir, Ghulam; Khan, Qaiser M; Afzal, Muhammad

    2014-01-01

    Prosopis juliflora is characterized by distinct and profuse growth even in nutritionally poor soil and environmentally stressed conditions and is believed to harbor some novel heavy metal-resistant bacteria in the rhizosphere and endosphere. This study was performed to isolate and characterize Cr-resistant bacteria from the rhizosphere and endosphere of P. juliflora growing on the tannery effluent contaminated soil. A total of 5 and 21 bacterial strains were isolated from the rhizosphere and endosphere, respectively, and were shown to tolerate Cr up to 3000 mg l(-1). These isolates also exhibited tolerance to other toxic heavy metals such as, Cd, Cu, Pb, and Zn, and high concentration (174 g l(-1)) of NaCl. Moreover, most of the isolated bacterial strains showed one or more plant growth-promoting activities. The phylogenetic analysis of the 16S rRNA gene showed that the predominant species included Bacillus, Staphylococcus and Aerococcus. As far as we know, this is the first report analyzing rhizo- and endophytic bacterial communities associated with P. juliflora growing on the tannery effluent contaminated soil. The inoculation of three isolates to ryegrass (Lolium multiflorum L.) improved plant growth and heavy metal removal from the tannery effluent contaminated soil suggesting that these bacteria could enhance the establishment of the plant in contaminated soil and also improve the efficiency of phytoremediation of heavy metal-degraded soils.

  7. 蒸汽爆破预处理降解香蕉茎秆纤维素组分的研究%Effect of Pretreatment by Steam Explosion on Degradation of the Banana Stalk Component

    Institute of Scientific and Technical Information of China (English)

    郑丽丽; 韩冰莹; 盛占武; 陈娇; 李奕星; 赵立欣

    2014-01-01

    Total solids content (TS) and volatile solids content (VS) of banana stalk were tested, and the content of cellulose, hemicellulose and lignin. Pretreatment banana stalk by steam explosion with different pressures and different time of keeping pressure. Analysis of degradation law of banana stalk hemicellulose, cellulose and lignin content after pretreatment. The samples of the treated and untreated banana stalks were with drawn to determined cellulose, hemicelluloses and lignose contents in dry matter. The results showed that when the explosion pressure was 3.5MPa, the time of maintain steam explosion pressure was 4min, degradation rate of hemicellulose, cellulose and lignin was 67.29%, 18.99%, and 55.40%, degradation rate of the overall content was 34.41%, These results indicate that pretreatment by steam explosion can degrade cellulose of banana stalks, and hemicellulose、 lignin were degraded significantly. The method of steam explosion are further advantages such as environmentally friendly and high-efficiency.%分析测试香蕉茎秆总固体含量(TS)和挥发性固体含量(VS)及香蕉茎秆固体剩余物中纤维素、半纤维素、木质素含量;采用蒸汽爆破法对香蕉茎秆进行预处理,探讨不同压力及维压时间下对香蕉茎秆中半纤维素、纤维素、木质素组分的降解程度,分析蒸汽爆破预处理优缺点。试验结果表明,经过蒸汽爆破预处理后,香蕉茎秆的组分被不同程度破坏,当压力为3.5 MPa,维压时间为4 min 时,香蕉茎秆中半纤维素含量由预处理前13.33%降至4.36%,降解率高达67.29%,纤维素含量由48.33%降至39.15%,降解率为18.99%,木质素含量由14.62%降至6.52%,降解率为55.40%,总体含量由76.28%降至50.03%,降解率为34.41%。说明蒸汽爆破技术对香蕉茎秆固体剩余物的预处理效果比较显著,有一定的优越性。

  8. Screening and characterization of purine nucleoside degrading lactic acid bacteria isolated from Chinese sauerkraut and evaluation of the serum uric acid lowering effect in hyperuricemic rats.

    Directory of Open Access Journals (Sweden)

    Ming Li

    Full Text Available Hyperuricemia is well known as the cause of gout. In recent years, it has also been recognized as a risk factor for arteriosclerosis, cerebrovascular and cardiovascular diseases, and nephropathy in diabetic patients. Foods high in purine compounds are more potent in exacerbating hyperuricemia. Therefore, the development of probiotics that efficiently degrade purine compounds is a promising potential therapy for the prevention of hyperuricemia. In this study, fifty-five lactic acid bacteria isolated from Chinese sauerkraut were evaluated for the ability to degrade inosine and guanosine, the two key intermediates in purine metabolism. After a preliminary screening based on HPLC, three candidate strains with the highest nucleoside degrading rates were selected for further characterization. The tested biological characteristics of candidate strains included acid tolerance, bile tolerance, anti-pathogenic bacteria activity, cell adhesion ability, resistance to antibiotics and the ability to produce hydrogen peroxide. Among the selected strains, DM9218 showed the best probiotic potential compared with other strains despite its poor bile resistance. Analysis of 16S rRNA sequences showed that DM9218 has the highest similarity (99% to Lactobacillus plantarum WCFS1. The acclimated strain DM9218-A showed better resistance to 0.3% bile salt, and its survival in gastrointestinal tract of rats was proven by PCR-DGGE. Furthermore, the effects of DM9218-A in a hyperuricemia rat model were evaluated. The level of serum uric acid in hyperuricemic rat can be efficiently reduced by the intragastric administration of DM9218-A (P<0.05. The preventive treatment of DM9218-A caused a greater reduction in serum uric acid concentration in hyperuricemic rats than the later treatment (P<0.05. Our results suggest that DM9218-A may be a promising candidate as an adjunctive treatment in patients with hyperuricemia during the onset period of disease. DM9218-A also has potential

  9. Carbon-dot-decorated TiO₂ nanotube arrays used for photo/voltage-induced organic pollutant degradation and the inactivation of bacteria.

    Science.gov (United States)

    Feng, Lingyan; Sun, Hanjun; Ren, Jinsong; Qu, Xiaogang

    2016-03-18

    Photoluminescent carbon dots (c-dots) have recently attracted growing interest as a new member of the carbon-nanomaterial family. Here, we report for the first time that c-dot-decorated TiO2 nanotube arrays (c-dot/TiNTs) exhibit highly enhanced abilities regarding photo/voltage-induced organic pollutant degradation and bacterial inactivation. By applying UV irradiation (365 nm) or an electrochemical potential over 3 V (versus Ag/AgCl), an organic dye and a herbicide were efficiently degraded. Moreover, the inactivation of Gram-positive S. aureus and Gram-negative E. coli bacteria was realized on a c-dot/TiNT film. The c-dots were able to absorb light efficiently resulting in multiple exciton generation and also a reduction in the recombination of the e(-)/h(+) pair produced in c-dot/TiNT film during photo/voltage-induced degradation. It was also possible to readily regenerate the surface using ultraviolet light irradiation, leaving the whole film structure undamaged and with high reproducibility and stability. PMID:26870882

  10. Carbon-dot-decorated TiO2 nanotube arrays used for photo/voltage-induced organic pollutant degradation and the inactivation of bacteria

    Science.gov (United States)

    Feng, Lingyan; Sun, Hanjun; Ren, Jinsong; Qu, Xiaogang

    2016-03-01

    Photoluminescent carbon dots (c-dots) have recently attracted growing interest as a new member of the carbon-nanomaterial family. Here, we report for the first time that c-dot-decorated TiO2 nanotube arrays (c-dot/TiNTs) exhibit highly enhanced abilities regarding photo/voltage-induced organic pollutant degradation and bacterial inactivation. By applying UV irradiation (365 nm) or an electrochemical potential over 3 V (versus Ag/AgCl), an organic dye and a herbicide were efficiently degraded. Moreover, the inactivation of Gram-positive S. aureus and Gram-negative E. coli bacteria was realized on a c-dot/TiNT film. The c-dots were able to absorb light efficiently resulting in multiple exciton generation and also a reduction in the recombination of the e-/h+ pair produced in c-dot/TiNT film during photo/voltage-induced degradation. It was also possible to readily regenerate the surface using ultraviolet light irradiation, leaving the whole film structure undamaged and with high reproducibility and stability.

  11. 氯嘧磺隆降解菌降解效果研究%Research on Degradation Effect of Chlorimuron ethyl Degradable Bacteria

    Institute of Scientific and Technical Information of China (English)

    王彦杰; 洪秀杰; 宋伟英; 王冬梅

    2012-01-01

    近年来除草剂在土壤中持续积累,对后茬敏感作物造成严重药害,导致作物减产甚至绝产,氯嘧磺隆就是其中一种广谱、超高效和残留期较长的磺酰脲类除草剂。该试验通过氯嘧磺隆降解菌的筛选并作用于受氯嘧磺隆药害的萌芽水稻种子,利用测定筛选出的氯嘧磺隆降解菌对氯嘧碘隆的降解作用来研究其对氟嘧磺隆的降解作用效果。结果表明:所筛选的氯嘧磺隆降解菌对氯嘧磺隆有一定的降解作用。在同一菌不同浓度下,氯嘧磺隆5μg·kg-1时降解效果最好。在同一氯嘧磺隆水平下,降解菌稀释倍数为100倍时降解效果最佳。%In recent years the herbicide is accumulated continually in the soil, bringing serious chemical damage to the stubble sensitive crop, which resuhed in the reduction of crop yield,even non-production. The chlorimuron ethyl is one of broad-spectrum,highly effective and sulphur ureide class weed killers. Through screening of the chlorimuron ethyl degradable bactieria and using it to affect the paddy rice seeds which were damaged by weed killer,the degeneration effect of the bactieria on the chlorimuron was studied. The result showed that the degeneration effect was the best when the dosage of chlorimuron ethyl was 5 μg·kg-1 , the best degradation effect was obtained when the bactieria was diluted 100 times at the same level of the chlorimuron ethyl dosage.

  12. Adaptation mechanisms of bacteria during the degradation of polychlorinated biphenyls in the presence of natural and synthetic terpenes as potential degradation inducers

    Energy Technology Data Exchange (ETDEWEB)

    Zoradova-Murinova, Slavomira; Dudasova, Hana; Lukacova, Lucia; Certik, Milan; Dercova, Katarina [Slovak Univ. of Technology, Bratislava (Slovakia). Inst. of Biotechnology and Food Science; Silharova, Katarina; Vrana, Branislav [Water Research Institute, Bratislava (Slovakia)

    2012-06-15

    In this study, we examined the effect of polychlorinated biphenyls (PCBs) in the presence of natural and synthetic terpenes and biphenyl on biomass production, lipid accumulation, and membrane adaptation mechanisms of two PCB-degrading bacterial strains Pseudomonas stutzeri and Burkholderia xenovorans LB400. According to the results obtained, it could be concluded that natural terpenes, mainly those contained in ivy leaves and pine needles, decreased adaptation responses induced by PCBs in these strains. The adaptation processes under investigation included growth inhibition, lipid accumulation, composition of fatty acids, cis/trans isomerization, and membrane saturation. Growth inhibition effect decreased upon addition of these natural compounds to the medium. The amount of unsaturated fatty acids that can lead to elevated membrane fluidity increased in both strains after the addition of the two natural terpene sources. The cells adaptation changes were more prominent in the presence of carvone, limonene, and biphenyl than in the presence of natural terpenes, as indicated by growth inhibition, lipid accumulation, and cis/trans isomerization. Addition of biphenyl and carvone simultaneously with PCBs increased the trans/cis ratio of fatty acids in membrane fractions probably as a result of fluidizing effects of PCBs. This stimulation is more pronounced in the presence of PCBs as a sole carbon source. This suggests that PCBs alone have a stronger effect on bacterial membrane adaptation mechanisms than when added together with biphenyl or natural or synthetic terpenes. (orig.)

  13. Degradation properties of various macromolecules of cultivable psychrophilic bacteria from the deep-sea water of the South Pacific Gyre.

    Science.gov (United States)

    Zhang, Li; Wang, Yan; Liang, Jing; Song, Qinghao; Zhang, Xiao-Hua

    2016-09-01

    The deep-sea water of the South Pacific Gyre (SPG, 20°S-45°S) is a cold and ultra-oligotrophic environment that is the source of cold-adapted enzymes. However, the characteristic features of psychrophilic enzymes derived from culturable microbes in the SPG remained largely unknown. In this study, the degradation properties of 174 cultures from the deep water of the SPG were used to determine the diversity of cold-adapted enzymes. Thus, the abilities to degrade polysaccharides, proteins, lipids, and DNA at 4, 16, and 28 °C were investigated. Most of the isolates showed one or more extracellular enzyme activities, including amylase, chitinase, cellulase, lipase, lecithinase, caseinase, gelatinase, and DNase at 4, 16, and 28 °C. Moreover, nearly 85.6 % of the isolates produced cold-adapted enzymes at 4 °C. The psychrophilic enzyme-producing isolates distributed primarily in Alteromonas and Pseudoalteromonas genera of the Gammaproteobacteria. Pseudoalteromonas degraded 9 types of macromolecules but not cellulose, Alteromonas secreted 8 enzymes except for cellulase and chitinase. Interestingly, the enzymatic activities of Gammaproteobacteria isolates at 4 °C were higher than those observed at 16 or 28 °C. In addition, we cloned and expressed a gene encoding an α-amylase (Amy2235) from Luteimonas abyssi XH031(T), and examined the properties of the recombinant protein. These cold-active enzymes may have huge potential for academic research and industrial applications. In addition, the capacity of the isolates to degrade various types of organic matter may indicate their unique ecological roles in the elemental biogeochemical cycling of the deep biosphere. PMID:27342115

  14. Natural Combination of Genetic Systems for Degradation of Phenol and Resistance to Heavy Metals in Phenol and Cyanide Assimilating Bacteria

    Directory of Open Access Journals (Sweden)

    El-Deeb, B.

    2009-01-01

    Full Text Available Combination of genetic systems of degradation of xenobiotic compound and heavy metal resistance is one of the approaches to the creation of polyfunctional strains for bioremediation of soil after co-contamination with organic pollutants and heavy metals. A bacterial strain Pseudomonas putida PhCN (pPhCN1, pPhCN2 has been obtained. This bacterium contains two plasmids, a 120-kb catabolic plasmid that encodes for breakdown of phenol (pPhCN1 and pPhCN2 plasmid that codes for cadmium and copper resistant. Cyanide assimilation by this bacterium is encoded by chromosomal genes. The inhibitory effect of cadmium (Cd2+ or copper (Cu2+ on the degradation of phenol by P. putida strains PhCN and PhCN1 (contained pPhCN1 were investigated in the presence of phenol and cyanide as a sole carbon and nitrogen source, respectively. The resistant strain PhCN showed high ability to degrade phenol and cyanide in presence of Cd2+ or Cu2+ as compared to the sensitive strain PhCN1. In addition, Cd2+ or Cu2+ was also found to exert a strong inhibitory effect on the C23O dioxygenase enzyme activity in the presence of cyanide as a nitrogen source. However, the presence of heavy metal resistance plasmid alleviated the inhibitory effect of metals on the enzyme activity in resistant strain.

  15. Cellulose degrading bacteria isolated from industrial samples and the gut of native insects from Northwest of Argentina.

    Science.gov (United States)

    Manfredi, Adriana P; Perotti, Nora I; Martínez, María A

    2015-12-01

    The raw materials used to produce bioethanol mostly are food crops, which has led to conflicts on food security. It is, therefore, recommended the gradual replacement for second generation substrates such as lignocellulosic materials. Herein, cellulolytic bacteria were isolated from the gut content of native larvae from Lepidoptera, Coleoptera, and adults of Isoptera. Few environmental samples from the pulp and paper feedstock were also assessed. A total of 233 isolates were obtained using enrichment cultures and classic criteria. Interestingly, several halo-forming colonies were found to be bacterial consortia that presented difficulties to take apart the microbial members. Those pure isolates which hydrolyzed cellulose in larger extend (45 strains) were selected and identified by means of 16S rRNA sequence analysis. Firmicutes was the prevalent phylum (62.2%) being Bacillus spp. the most frequent genus, while Paenibacillus, Brevibacillus, Cohnella, and Staphylococcus species were less frequent. The phylum Actinobacteria (6.7%) was represented by isolates related to Agromyces spp. and Microbacterium spp. Regarding Gram-negative bacteria (31.1%), the more depicted genus was Pseudomonas spp., and members of Achromobacter spp., Enterobacter spp., and Bacteroidetes phylum were also selected. These native bacterial strains are expected to enlarge the cellulolytic toolbox for efficient biomass deconstruction. PMID:26370071

  16. Cellulose degrading bacteria isolated from industrial samples and the gut of native insects from Northwest of Argentina.

    Science.gov (United States)

    Manfredi, Adriana P; Perotti, Nora I; Martínez, María A

    2015-12-01

    The raw materials used to produce bioethanol mostly are food crops, which has led to conflicts on food security. It is, therefore, recommended the gradual replacement for second generation substrates such as lignocellulosic materials. Herein, cellulolytic bacteria were isolated from the gut content of native larvae from Lepidoptera, Coleoptera, and adults of Isoptera. Few environmental samples from the pulp and paper feedstock were also assessed. A total of 233 isolates were obtained using enrichment cultures and classic criteria. Interestingly, several halo-forming colonies were found to be bacterial consortia that presented difficulties to take apart the microbial members. Those pure isolates which hydrolyzed cellulose in larger extend (45 strains) were selected and identified by means of 16S rRNA sequence analysis. Firmicutes was the prevalent phylum (62.2%) being Bacillus spp. the most frequent genus, while Paenibacillus, Brevibacillus, Cohnella, and Staphylococcus species were less frequent. The phylum Actinobacteria (6.7%) was represented by isolates related to Agromyces spp. and Microbacterium spp. Regarding Gram-negative bacteria (31.1%), the more depicted genus was Pseudomonas spp., and members of Achromobacter spp., Enterobacter spp., and Bacteroidetes phylum were also selected. These native bacterial strains are expected to enlarge the cellulolytic toolbox for efficient biomass deconstruction.

  17. Molecular application for identification of polycyclic aromatic hydrocarbons degrading bacteria (PAHD) species isolated from oil polluted soil in Dammam, Saud Arabia.

    Science.gov (United States)

    Ibrahim, Mohamed M; Al-Turki, Ameena; Al-Sewedi, Dona; Arif, Ibrahim A; El-Gaaly, Gehan A

    2015-09-01

    Soil contamination with petroleum hydrocarbon products such as diesel and engine oil is becoming one of the major environmental problems. This study describes hydrocarbons degrading bacteria (PHAD) isolated from long-standing petrol polluted soil from the eastern region, Dammam, Saudi Arabia. The isolated strains were firstly categorized by accessible shape detection, physiological and biochemistry tests. Thereafter, a technique established on the sequence analysis of a 16S rDNA gene was used. Isolation of DNA from the bacterial strains was performed, on which the PCR reaction was carried out. Strains were identified based on 16S rDNA sequence analysis, As follows amplified samples were spontaneously sequenced automatically and the attained results were matched to open databases. Among the isolated bacterial strains, S1 was identified as Staphylococcus aureus and strain S1 as Corynebacterium amycolatum. PMID:26288572

  18. Natural Combination of Genetic Systems for Degradation of Phenol and Resistance to Heavy Metals in Phenol and Cyanide Assimilating Bacteria

    OpenAIRE

    El-Deeb, B.

    2009-01-01

    Combination of genetic systems of degradation of xenobiotic compound and heavy metal resistance is one of the approaches to the creation of polyfunctional strains for bioremediation of soil after co-contamination with organic pollutants and heavy metals. A bacterial strain Pseudomonas putida PhCN (pPhCN1, pPhCN2) has been obtained. This bacterium contains two plasmids, a 120-kb catabolic plasmid that encodes for breakdown of phenol (pPhCN1) and pPhCN2 plasmid that codes for cadmium and copp...

  19. 以玉米秸秆为底物的纤维素降解菌与产电菌联合产电的可行性%Electricity generation from corn stover by cellulose degradation bacteria and exoelectrogenic bacteria

    Institute of Scientific and Technical Information of China (English)

    冯玉杰; 王鑫; 王赫名; 于艳玲; 李冬梅

    2009-01-01

    The possibility of direct electricity production from steam exploded com stover residue was studied in single chamber air-cathode microbial fuel cells ( MFCs) using two cellulose degrading bacteria ( Chaetomium sp. , Bacillus sp. ) and two cellulose degrading communities (PCS-S and H-C; stored in our laboratory) as biocatalysts. Both pure strains and mixed communities can decompose corn stover in MFCs, but little electricity ( < 90 mV , 1000Ω) was generated during this process. Increasing the temperature from 30 to 38. 5℃ did not increase voltage outputs. Using domestic wastewater solely as inoculum, electricity cannot be generated from degradation of com stover. Maximum voltage was observed in the MFC using H-C co-operated with the exoelectrogenic bacteria. The maximum power density from steam exploded com stover residue was 406 mW · m~(-2) , which was only 20% lower than the 510 mW·m~(-2) obtained using glucose as a substrate.%利用单室空气阴极微生物燃料电池(MFC)反应器,以玉米秸秆为底物.以本实验室筛选和保存的纤维素降解菌Chaetomium sp.和Bacillus sp.,以及纤维素降解混合菌PCS-S和H-C为秸秆降解的生物催化剂,探讨了以汽爆秸秆固体为底物进行微生物产电的可行性.结果表明,在MFC系统内,纤维索降解纯菌和混合菌均能使纤维素降解,但产生的电压很低(<90mV,1000Ω),升高温度(30-38.5℃)对电压输出无明显影响.单独以生活污水作为菌源不能直接降解秸秆产电.只有将H-C和生活污水(产电菌源)混合作为接种体,MFC才能获得较高的电压输出.此时得到的以汽爆秸秆固体作为底物时的最大功率密度为406mW·m-2,仅比葡萄糖作为底物时所得到的最大功率密度510 mW·m-2低20%.

  20. Isolation and Screening of Phenol Degrading Bacteria and its Degradation Rate in Petrochemical Industry Wastewater%石化工业污水中分离筛选苯酚降解菌及其降解率研究

    Institute of Scientific and Technical Information of China (English)

    丁海燕; 张国发; 武燕; 冯伟

    2015-01-01

    自然界中某些微生物具有较强的酚降解能力,利用微生物处理含酚废水的方法受到了越来越广泛的重视。该文通过梯度平板法从石化工业废水中分离筛选得到3株降解酚的细菌,苯酚降解率分别为90.9%、82.5%、74.9%。对其进一步深入研究,进而将其应用到工厂等污水处理方面,降低含苯酚的废水排出,具有一定的指导意义。%Some microorganisms in nature have a strong ability to degrade phenol. The method of treating phenol wastewater by microorganism has been paid more and more attention. In this article,three strains of bacteria were isolated and screened from the petrochemical industrial wastewater by gradient plate method. The degradation rate of phenol was 90.9%,82.5% and 74.9%. It has guiding significance for further study, and then appling to the plant and other wastewater treatment,reducing the wastewater containing phenol wastewater discharge.

  1. Characterization of Carbofuran Degrading Bacteria Obtained from Potato Cultivated Soils with Different Pesticide Application Records / Caracterización de Bacterias Degradadoras de Carbofuran Obtenidas de Suelos Bajo Cultivo de Papa y con Diferente Histor

    Directory of Open Access Journals (Sweden)

    Castellanos Rozo José

    2013-08-01

    Full Text Available Abstract. Eighty-two bacterial isolates with potential Carbofurandegradation activity (Furadan®3SC were obtained from soilscultivated with the potato variety Unica (Solanum tuberosumin Silos, Norte de Santander (Colombia, with different recordsof pesticide application. The bacteria were selected for theirability to grow at 25 °C for 72 h in media containing 200 mgL-1 of analytical Carbofuran as the sole source of carbon and/or nitrogen. The results showed that ten isolates, 12% of those obtained, grew in the culture media. Eight of theses isolates were obtained from soils with a high pesticide exposure (eight years of application, and identified, by macroscopic, microscopic and biochemical characteristics, as Sphingomonas paucimobilis. The other two were obtained from soils with three years and one year of application and were identified as Pseudomonas aeruginosa and Yersinia pseudotuberculosis, respectively. Subsequently, these bacteria were tested for their ability of hydrolytic degradation of Carbofuran; the results show that the pesticide was degraded only by the isolates of Sphingomonas paucimobilis for 72 h. The results obtained in the in vitro tests show the bacterial metabolic capacity for the biodegradation of Carbofuran, highlighting the potential use of the bacteria for future field evaluation tests in places where residues of the pesticide may exist, as an alternative to control the impact that N-methyl carbamate pesticides have on the environment and human health. / Resumen. Ochenta y dos aislamientos bacterianos con actividad potencial de degradación de Carbofuran (Furadan®3SC, fueron obtenidos de suelos, cultivados con papa (Solanum tuberosum variedad Única, del municipio de Silos, Norte de Santander (Colombia con diferente historia de aplicación del plaguicida. Las bacterias fueron seleccionadas por su capacidad para crecer a 25 °C durante 72 h, en medios de cultivo conteniendo 200 mg L-1 de Carbofuran analítico como

  2. Metabolic versatility of toluene-degrading, iron-reducing bacteria in tidal flat sediment, characterized by stable isotope probing-based metagenomic analysis.

    Science.gov (United States)

    Kim, So-Jeong; Park, Soo-Je; Cha, In-Tae; Min, Deullae; Kim, Jin-Seog; Chung, Won-Hyung; Chae, Jong-Chan; Jeon, Che Ok; Rhee, Sung-Keun

    2014-01-01

    DNA stable isotope probing and metagenomic sequencing were used to assess the metabolic potential of iron-reducing bacteria involved in anaerobic aromatic hydrocarbon degradation in oil spill-affected tidal flats. In a microcosm experiment, (13) C-toluene was degraded with the simultaneous reduction of Fe(III)-NTA, which was also verified by quasi-stoichiometric (13) C-CO2 release. The metabolic potential of the dominant member affiliated with the genus Desulfuromonas in the heavy DNA fraction was inferred using assembled scaffolds (designated TF genome, 4.40 Mbp with 58.8 GC mol%), which were obtained by Illumina sequencing. The gene clusters with peripheral pathways for toluene and benzoate conversion possessed the features of strict and facultative anaerobes. In addition to the class II-type benzoyl-CoA reductase (Bam) of strict anaerobes, the class I-type (Bcr) of facultative anaerobes was encoded. Genes related to the utilization of various anaerobic electron acceptors, including iron, nitrate (to ammonia), sulfur and fumarate, were identified. Furthermore, genes encoding terminal oxidases (caa3 , cbb3 and bd) and a diverse array of genes for oxidative stress responses were detected in the TF genome. This metabolic versatility may be an adaptation to the fluctuating availability of electron acceptors and donors in tidal flats. PMID:24118987

  3. 菠萝渣纤维素降解菌的筛选及鉴定%Screening and Identification of Cellulose Degrading-Bacteria from Fermented Pineapple Residue

    Institute of Scientific and Technical Information of China (English)

    罗萍; 陈永辉; 贺军军; 李勤奋; 刘洋; 易润华

    2011-01-01

    In order to accelerate the fermentation of pineapple residue, various cellulose degrading-bacteria were isolated from naturally fermented pineapple residue by using manifold selective media, and obtained a pineapple residue cellulose degrading strain c3bl-3 through preliminary and repeated screenings with optimal medium of protein cellulose medium (PCS).It was identified as Chryseobacterium sp.according to its morphology, physiology, bio-chemical and molecular characteristics.%为了加快菠萝渣快速发酵,通过利用多种选择性培养基,从自然发酵的菠萝渣中分离到多种纤维素分解菌,经过初筛和复筛,获得了降解菠萝渣纤维素的菌株c3b1-3,其最适合的培养基为蛋白纤维素培养基;通过形态、生理生化特征和分子综合鉴定得出c3b1-3为金黄杆菌属(Chryseobacterium sp.).

  4. 甘蔗渣纤维素降解菌的筛选及鉴定%Screening and Identification of Cellulose Degrading-Bacteria from Fermented Bagasse

    Institute of Scientific and Technical Information of China (English)

    贺军军; 罗萍; 陈永辉; 易润华; 李勤奋; 戴小红

    2011-01-01

    Several cellulose degrading-bacteria were isolated form naturally fermented bagasse at different stages using multiple selective media. Strain clg3-3, which had the capability of degrading cellulose of bagasse, was obtained through preliminary and secondary screenings, as well as the optimal PCS medium. Strain clg3-3 was identifled as Achromobacter xylosoxidans according to its morphology, physiology, bio-chemical and molecular characteristics.%通过利用多种选择性培养基,从自然发酵不同阶段的甘蔗渣中分离到多种纤雏素分解菌,经过初筛和复筛,获得了降解纤维素的功能菌株clg3-3及其最适功能培养基蛋白胨纤维素培养基(PCS),并通过形态、生理生化和分子综合鉴定得出clg3-3鉴定为木糖氧化无色杆菌(Achromobacter xylosoxidans).

  5. Visible light photo catalytic inactivation of bacteria and photo degradation of methylene blue with Ag/TiO2 nanocomposite prepared by a novel method.

    Science.gov (United States)

    Tahir, Kamran; Ahmad, Aftab; Li, Baoshan; Nazir, Sadia; Khan, Arif Ullah; Nasir, Tabassum; Khan, Zia Ul Haq; Naz, Rubina; Raza, Muslim

    2016-09-01

    Water purification is one of the worldwide problem and most of the conventional methods are associated with a number of drawbacks. Therefore it is the need of the day to develop new methods and materials to overcome the problem of water purification. In this research work we present a simple and green approach to synthesize silver decorated titanium dioxide (Ag/TiO2) nanocomposite with an efficient photo catalytic activities. Phytochemicals of the Cestrum nocturnum leaf extract were used to synthesize silver nanoparticles (AgNPs), Titanium dioxide (TiO2) and Ag/TiO2 nanocomposite. To confirm the formation, crystal structure, particle size and shape of green synthesized nanoparticles and nanocomposite, they were characterized by UV-visible spectroscopy (UV-vis), X-ray diffraction spectroscopy (XRD), high resolution transmission electron microscopy (HRTEM), Scanning electron microscopy (SEM) and Fourier transform infrared spectroscopy (FT-IR). The AgNPs, TiO2 and Ag/TiO2 were evaluated for photo degradation of methylene blue (MB) and photo inhibition of Bacteria. The bio-synthesized Ag/TiO2 nanocomposite was observed to have strong catalytic activities for photo reduction of MB and photo inactivation of bacteria as compared to bare AgNPs and TiO2. In the presence of Ag/TiO2, 90% of MB was degraded only in 40min of irradiation. Alternatively the bare AgNPs and TiO2 degraded less than 30% and 80% respectively of MB even in more than 100min of irradiation. Similarly the Ag/TiO2 has very strong photo inhibition efficiency towards Escherichia coli and Pseudomonas aeruginosa. The zone of inhibition of irradiated Ag/TiO2 nanocomposites against E. coli and P. aeruginosa was 19mm and 17mm respectively which was two times higher than in dark. These promising photocatalytic activities of nanocomposite may be due to the highly decorated AgNPs over the surface of TiO2.

  6. Visible light photo catalytic inactivation of bacteria and photo degradation of methylene blue with Ag/TiO2 nanocomposite prepared by a novel method.

    Science.gov (United States)

    Tahir, Kamran; Ahmad, Aftab; Li, Baoshan; Nazir, Sadia; Khan, Arif Ullah; Nasir, Tabassum; Khan, Zia Ul Haq; Naz, Rubina; Raza, Muslim

    2016-09-01

    Water purification is one of the worldwide problem and most of the conventional methods are associated with a number of drawbacks. Therefore it is the need of the day to develop new methods and materials to overcome the problem of water purification. In this research work we present a simple and green approach to synthesize silver decorated titanium dioxide (Ag/TiO2) nanocomposite with an efficient photo catalytic activities. Phytochemicals of the Cestrum nocturnum leaf extract were used to synthesize silver nanoparticles (AgNPs), Titanium dioxide (TiO2) and Ag/TiO2 nanocomposite. To confirm the formation, crystal structure, particle size and shape of green synthesized nanoparticles and nanocomposite, they were characterized by UV-visible spectroscopy (UV-vis), X-ray diffraction spectroscopy (XRD), high resolution transmission electron microscopy (HRTEM), Scanning electron microscopy (SEM) and Fourier transform infrared spectroscopy (FT-IR). The AgNPs, TiO2 and Ag/TiO2 were evaluated for photo degradation of methylene blue (MB) and photo inhibition of Bacteria. The bio-synthesized Ag/TiO2 nanocomposite was observed to have strong catalytic activities for photo reduction of MB and photo inactivation of bacteria as compared to bare AgNPs and TiO2. In the presence of Ag/TiO2, 90% of MB was degraded only in 40min of irradiation. Alternatively the bare AgNPs and TiO2 degraded less than 30% and 80% respectively of MB even in more than 100min of irradiation. Similarly the Ag/TiO2 has very strong photo inhibition efficiency towards Escherichia coli and Pseudomonas aeruginosa. The zone of inhibition of irradiated Ag/TiO2 nanocomposites against E. coli and P. aeruginosa was 19mm and 17mm respectively which was two times higher than in dark. These promising photocatalytic activities of nanocomposite may be due to the highly decorated AgNPs over the surface of TiO2. PMID:27376463

  7. 壬基酚降解菌的分离筛选及其降解条件的优化%Isolation, screening of NP-degrading bacteria and the optimization of degradation conditions

    Institute of Scientific and Technical Information of China (English)

    马娟; 杨芬; 唐玉斌; 陈芳艳; 王新刚

    2015-01-01

    In order to effectively control the NP-polluted water and enrich microbial resources of NP-degrading bacteria, two bacterial strains were isolated from the landfill leachate.The two NP-degrading bacteria, designat-ed strains SLY7 and SLY8.The morphology observation and 16S rDNA identification revealed that the two strains belonged to Pseudomonas stutzeri and Leclercia adecarboxylata, respectively.By shaking flasks tests, the effects of the conditions of degradation of NP by the strains was studied.SLY7 was determined that the optimum condi-tions were inoculum amount 3%, pH 8.0, and 30℃, on a shaker at 120 rpm for 3 d.Under these conditions, when the initial concentration was 10 mg/L, the degrading rate of NP reached 72.83%.SLY8 was determined that the optimum conditions were inoculum amount 5%, pH 7.0, and 35℃, on a shaker at 120 rpm.Under these conditions, the duration was 3 d, when the initial concentration was 5 mg/L, the degrading rate of NP reached 64.43%.%为了有效地对壬基酚( NP)污染水环境进行生物修复,丰富高效降解NP的微生物资源,从垃圾填埋场的垃圾渗滤液中,分离得到两株NP高效降解菌SLY7和SLY8,根据菌落的形态特征和16S rDNA序列分析,初步鉴定SLY7为施氏假单胞菌( Pseudomonas stutzeri) ,SLY8为非脱羧勒克菌( Leclercia adecarboxylata) .通过摇瓶实验考察NP的初始浓度、pH、温度以及投菌量等因素对菌株降解NP能力的影响.结果表明:菌株SLY7的最佳降解条件为温度30℃,pH为8.0,接种量3%( V/V),振荡速率120 r/min,在此条件下,历时3 d,对初始浓度为10 mg/L的NP的降解率可达72.83%;菌株SLY8的最佳降解条件为温度35℃,pH为7.0,接种量5%(V/V),振荡速率120 r/min,在此条件下,历时3 d,对初始浓度为5 mg/L的NP的降解率可达64.43%.

  8. Stable carbon isotope fractionation of trans-1,2-dichloroethylene during co-metabolic degradation by methanotrophic bacteria

    Science.gov (United States)

    Brungard, K.L.; Munakata-Marr, J.; Johnson, C.A.; Mandernack, K.W.

    2003-01-01

    Changes in the carbon isotope ratio (??13C) of trans-1,2-dichloroethylene (t-DCE) were measured during its co-metabolic degradation by Methylomonas methanica, a type I methanotroph, and Methylosinus trichosporium OB3b, a type II methanotroph. In closed-vessel incubation experiments with each bacterium, the residual t-DCE became progressively enriched in 13C, indicating isotopic fractionation. From these experiments, the biological fractionation during t-DCE co-metabolism, expressed as ??, was measured to be -3.5??? for the type I culture and -6.7??? for the type II culture. This fractionation effect and subsequent enrichment in the ??13C of the residual t-DCE can thus be applied to determine the extent of biodegradation of DCE by these organisms. Based on these results, isotopic fractionation clearly warrants further study, as measured changes in the ??13C values of chlorinated solvents could ultimately be used to monitor the extent of biodegradation in laboratory or field settings where co-metabolism by methanotrophs occurs. ?? 2002 Elsevier Science B.V. All rights reserved.

  9. Explosive laser

    International Nuclear Information System (INIS)

    This patent relates to a laser system wherein reaction products from the detonation of a condensed explosive expand to form a gaseous medium with low translational temperature but high vibration population. Thermal pumping of the upper laser level and de-excitation of the lower laser level occur during the expansion, resulting in a population inversion. The expansion may be free or through a nozzle as in a gas-dynamic configuration. In one preferred embodiment, the explosive is such that its reaction products are CO2 and other species that are beneficial or at least benign to CO2 lasing

  10. Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms.

    Science.gov (United States)

    Hausmann, Bela; Knorr, Klaus-Holger; Schreck, Katharina; Tringe, Susannah G; Glavina Del Rio, Tijana; Loy, Alexander; Pester, Michael

    2016-10-01

    Dissimilatory sulfate reduction in peatlands is sustained by a cryptic sulfur cycle and effectively competes with methanogenic degradation pathways. In a series of peat soil microcosms incubated over 50 days, we identified bacterial consortia that responded to small, periodic additions of individual fermentation products (formate, acetate, propionate, lactate or butyrate) in the presence or absence of sulfate. Under sulfate supplementation, net sulfate turnover (ST) steadily increased to 16-174 nmol cm(-3) per day and almost completely blocked methanogenesis. 16S rRNA gene and cDNA amplicon sequencing identified microorganisms whose increases in ribosome numbers strongly correlated to ST. Natively abundant (⩾0.1% estimated genome abundance) species-level operational taxonomic units (OTUs) showed no significant response to sulfate. In contrast, low-abundance OTUs responded significantly to sulfate in incubations with propionate, lactate and butyrate. These OTUs included members of recognized sulfate-reducing taxa (Desulfosporosinus, Desulfopila, Desulfomonile, Desulfovibrio) and also members of taxa that are either yet unknown sulfate reducers or metabolic interaction partners thereof. Most responsive OTUs markedly increased their ribosome content but only weakly increased in abundance. Responsive Desulfosporosinus OTUs even maintained a constantly low population size throughout 50 days, which suggests a novel strategy of rare biosphere members to display activity. Interestingly, two OTUs of the non-sulfate-reducing genus Telmatospirillum (Alphaproteobacteria) showed strongly contrasting preferences towards sulfate in butyrate-amended microcosms, corroborating that closely related microorganisms are not necessarily ecologically coherent. We show that diverse consortia of low-abundance microorganisms can perform peat soil sulfate reduction, a process that exerts control on methane production in these climate-relevant ecosystems. PMID:27015005

  11. The screening and identification of oil degradation bacteria producing surfactant%产表面活性剂石油降解菌株的筛选及鉴定

    Institute of Scientific and Technical Information of China (English)

    花莉; 洛晶晶; 胡阳阳; 彭香玉; 贾卫华

    2014-01-01

    7 strains degrading oil were isolated from long-term oil-contaminated soil and they were numbered as bacteria 2-1 ,bacteria 7-1 ,bacteria 1-2 ,bacteria5-2 ,bacteria 7-2 ,bacteria oil 3 ,bacteria oil 5 ,of which bacteria 2-1 and bacteria 7-1 were identified as Serratia marces-cens ,bacteria 1-2 as Raoultella planticola ,bacteria 5-2 ,bacteria oil 3 ,and bacteria oil 5 as Klebsiella genus ,bacteria 7-2 as Bacillus cereus by morphological observation ,Biolog identi-fication and 16S rDNA gene sequence analysis .Bacteria 1-2 ,bacteria 5-2 and bacteria 7-2 en-abled the surface tension of the fermentation liquid reduce from 36 .1 mN /m to 20 .2 mN /m ,20 .74 mN /m and 21 .78 mN/m ,indicating the surfactants produced by the bacteriums have a strong emulsification crude capacity and show great potential .%从长期受油污的土壤中分离得到了7株降解石油类菌株,其编号分别为菌2-1、菌7-1、菌1-2、菌5-2、菌7-2、菌油3及菌油5.经形态观察、Biolog鉴定和16S rDNA 基因序列分析,可鉴定菌2-1和菌7-1为粘质沙雷氏菌,菌1-2为居植物柔武氏菌,菌5-2、菌油3和菌油5都为克雷伯氏菌属,菌7-2为蜡状芽孢杆菌.其中,菌1-2、菌5-2和菌7-2能使发酵液的表面张力从36.10 m N/m降低至20.20 m N/m、20.74 m N/m、21.78 m N/m ,表明这些菌所产生的表面活性剂能具有较强的乳化原油的能力,展现了较大的应用前景.

  12. 青霉素菌渣残留降解物的蓄积毒性研究%Cumulative Toxicity of Residue Degradation Products of Penicillin Bacteria

    Institute of Scientific and Technical Information of China (English)

    孙全文; 张丹参; 薛桂平; 李凤学; 吴淑琴; 乔健

    2010-01-01

    [Objective] The research aimed to discuss the accumulation of toxic slag of penicillin bacteria residue degradation products and explore its ability to meet the aquaculture industry as a protein feed into development and utilization conditions.[Method] Through the sub-acute toxicity tests in mice strains,which were fed by different doses of penicillin bacteria residue degradation products (3% and 6%) under continuous observation of 15 weeks,recording a weekly mouse weight and death,and sampling executed after the test,animal liver and kidney function were blood test,taking heart,liver,spleen,kidney weighing,as well as liver and kidney pathology observed in the optical microscope.[Result] There were no significant differences (P > 0.05) between the test group mice body weight,mortality and liver and kidney function and the control group within 15 weeks.Low-dose test group could be seen the liver cells,renal tubular epithelial nuclei broken,and a small number of liver and kidney cells with mild edema.High-dose test group could be seen in liver tissue of mice nuclei fragmentation and a fat droplets,the majority of liver cells,edema,and only a small number of liver cells,there were no significant changes.Renal portal area showed inflammatory cell infiltration,renal tubular epithelial cells,edema and necrosis.[Conclusion] In this experimental condition,the degradation products of penicillin bacteria residue played a mild toxcity on organ parenchymal cells in mice.%[目的]初步研究青霉素菌渣残留降解物的蓄积毒性,进而探讨其是否具备作为蛋白饲料投入养殖业开发利用的条件.[方法]通过小鼠亚急性毒性试验,饲喂小鼠不同剂量的青霉素菌渣降解物(3%和6%)连续观察15周,记录每周小白鼠的体重和死亡情况;试验结束后抽样处死,取血测动物肝、肾功能,取心、肝、脾、肾称重,并在光镜下对肝、肾组织做病理学观察.[结果]试验组小白鼠体重、死亡率及肝

  13. Effect of pH on biologic degradation of Microcystis aeruginosa by alga-lysing bacteria in sequencing batch biofilm reactors

    Institute of Scientific and Technical Information of China (English)

    Hongjing LI; Mengli HAO; Jingxian LIU; Chen CHEN1; Zhengqiu FAN; Xiangrong WANG

    2012-01-01

    In this paper, the effect of pH on biological degradation of Microcystis aeruginosa by alga-lysing bacteria in laboratory-scale sequencing batch biofilm reactors (SBBRs) was investigated. After 10 d filming with waste activated sludge, the biological film could be formed, and the bioreactors in which laid polyolefin resin filler were used to treat algal culture. By comparing the removal efficiency of chlorophyll a at different aerobic time, the optimum time was determined as 5 h. Under pH 6.5, 7.5, and 8.5 conditions, the removal rates of Microcystis aeruginosa were respectively 75.9%, 83.6%, and 78.3% (in term of chlorophyll a), and that of Chemical Oxygen Demand (CODMn) were 30.6%, 35.8%, and 33.5%. While the removal efficiencies of ammonia nitrogen (NH+ -N) were all 100%. It was observed that the sequence of the removal efficiencies of algae, NH+ -N and organic matter were pH 7.5 〉 pH 8.5 〉 pH 6.5. The results showed that the dominant alga-lysing bacteria in the SBBRs was strain HM-01, which was identified as Bacillus sp. by Polymerase Chain Reaction (PCR) amplification of the 16S rRNA gene, Basic Local Alignment Search Tool (BLAST) analysis, and compar- ison with sequences in the GenBank nucleotide database. The algicidal activated substance which HM-01 strain excreted could withstand high temperature and pressure, also had better hydrophily and stronger polarity.

  14. Explosive complexes

    Science.gov (United States)

    Huynh, My Hang V.

    2009-09-22

    Lead-free primary explosives of the formula [M.sup.II(A).sub.R(B.sup.X).sub.S](C.sup.Y).sub.T, where A is 1,5-diaminotetrazole, and syntheses thereof are described. Substantially stoichiometric equivalents of the reactants lead to high yields of pure compositions thereby avoiding dangerous purification steps.

  15. Niche explosion.

    Science.gov (United States)

    Normark, Benjamin B; Johnson, Norman A

    2011-05-01

    The following syndrome of features occurs in several groups of phytophagous insects: (1) wingless females, (2) dispersal by larvae, (3) woody hosts, (4) extreme polyphagy, (5) high abundance, resulting in status as economic pests, (6) invasiveness, and (7) obligate parthenogenesis in some populations. If extreme polyphagy is defined as feeding on 20 or more families of hostplants, this syndrome is found convergently in several species of bagworm moths, tussock moths, root weevils, and 5 families of scale insects. We hypothesize that extreme polyphagy in these taxa results from "niche explosion", a positive feedback loop connecting large population size to broad host range. The niche explosion has a demographic component (sometimes called the "amplification effect" in studies of pathogens) as well as a population-genetic component, due mainly to the increased effectiveness of natural selection in larger populations. The frequent origins of parthenogenesis in extreme polyphages are, in our interpretation, a consequence of this increased effectiveness of natural selection and consequent reduced importance of sexuality. The niche explosion hypothesis makes detailed predictions about the comparative genomics and population genetics of extreme polyphages and related specialists. It has a number of potentially important implications, including an explanation for the lack of observed trade-offs between generalists and specialists, a re-interpretation of the ecological correlates of parthenogenesis, and a general expectation that Malthusian population explosions may be amplified by Darwinian effects.

  16. Screenmg and Identification of High Efficiency Oil Degrading Bacteria%高效油脂降解菌的筛选与鉴定

    Institute of Scientific and Technical Information of China (English)

    罗跃中; 兰立新; 李忠英; 吴永尧

    2012-01-01

    [目的]筛选并鉴定高效油脂降解菌。[方法]采用富集分离法从食堂下水道口的污泥、污水池、油脂加工厂和发霉菜籽饼中分离出8株具有油脂降解能力的菌种,经复筛最终得到1株降解油脂能力较高的菌株,通过从菌株形态和生理生化特征进行鉴定。[结果]菌株CS-4的初始酶活力为10 U/mL,在牛肉膏蛋白胨固体培养基上表面光滑,单菌落,湿润,革兰氏阳性杆菌,有运动性,好氧,葡萄糖发酵产酸,初步确定该菌为芽孢杆菌属。[结论]该研究为在油脂下脚料及油脂污染中采用生物降解提供一定的理论依据。%[Objective] The aim was to screen and identify high effieieney oil degrading bacteria. [Method] 8 strains that had good degradation on oil were isolated from the mud of canteen outtall,sewage tank, oil processing and mildew rapeseed meal by enrichment euhure. Through secondary screening, 1 strain that could effectively degrade oil was obtained finally. Morphological, physiologieal and biochemical characteristics were used to identify strain. [llesult] The initial enzyme activity of the strain CS-4 was 10 U/mL. The physiological and biochemical characteristics of the strain CS-4 were surfaee smooth on beef extraet peptone solid medium, single colony, wetting, gram-positive bacilli, with sports, aerobic and fermentation of glucose. [Conclusion] This study provide theoretical basis for solving grease waste and oil pollution with method of biodegradation.

  17. 纤维素降解细菌筛选及降解特性分析%Study on the screening of cellulose-degrading bacteria and the degradation characteristics

    Institute of Scientific and Technical Information of China (English)

    刘乐; 鞠美庭; 李维尊; 江洋

    2012-01-01

    In order to obtain high efficient cellulose degrading bacteria,LB medium and Congo red agar medium were used to culture and screening strains that isolated from cow dung compost. Results showed that the two obtained strains were identified as Bacillus subtilis and Bacillus licheniformis. In the filter paper decomposition experiment, the filter paper could be shaken into paste in 6 days, which indicated that the two strains had great capacity of filter paper decomposition. The sodium carboxy methyl cellulose enzyme activity of Bacillus licheniformis reached the peak value (237 U/g) at the fourth day of fermentation.%基于获得高教纤维素降解细菌的目的,通过LB培养基的培养以及刚果红培养基的筛选,从牛粪堆肥中筛选获得2株高效纤维素降解细菌.经鉴定,分别为枯草芽胞杆菌(Bacillus subtilis)和地衣芽胞杆菌(Bacillus licheniformis).所筛选得到的菌种具有很高的滤纸降解能力,可在6d内使滤纸剧烈崩溃,振摇成均匀糊状;其中,地衣芽胞杆菌的羧甲基纤维素钠酶活峰值在发酵第4天达到峰值(237 U/g).

  18. Influence of an aerobic fungus grown on solid culture on ruminal degradability and on a mixture culture of anaerobic cellulolytic bacteria.

    Science.gov (United States)

    Hernández-Díaz, R; Pimentel-González, D J; Figueira, A C; Viniegra-González, G; Campos-Montiel, R G

    2010-06-01

    In this work, the effect of a solid fungal culture of Aspergillus niger (An) grown on coffee pulp on the in situ ruminal degradability (RD) of corn stover was evaluated. In addition, the effect of its extracts on the in vitro dry matter disappearance (IVDMD) and on a mixed culture of anaerobic cellulolytic bacteria (MCACB) was also investigated. The solid ferment was a crude culture of An, grown on coffee pulp. Regarding in situ RD, a significant difference (p < 0.05) was found between treatment with 200 g/day of the solid culture and control (no solid culture added) on dry matter, crude protein and neutral detergent fibre on RD. All the water extracts (pH 4, 7 and 10) enhanced IVDMD and stimulated the cellulolytic activity on a MCACB. Ultrafiltration results showed that active compounds with a molecular weight lower than 30 kDa were responsible for the effect on MCACB. Such results suggest that the effects of the solid An culture in RD are related to the presence of water soluble compounds having a molecular weight lower than 30 kDa.

  19. Isolation of Soil Bacteria Species for Degrading Dibenzothiophene%用于降解硫芴的土壤菌种的分离

    Institute of Scientific and Technical Information of China (English)

    姜成英; 刘会洲; 谢渝春; 陈家镛

    2002-01-01

    Five bacterial strains, which are able to grow and to disintegrate dibenzothiophene (DBT) and dibenzothiophene sulfone (DBTO2) in fossil fuels, are isolated. Analysis of products of DBT metabolized by these strains shows that different bacteria strains oxidize DBT by different pathways. The isolated strains R-6, R-16, R-9 and R-8 can metabolize DBT to DBTO2 and 2-hydroxybiphenyl (HBP), which are identified as Bacillus brevis, Bacillus sphaericus, Nocardia globerula and Pseudomonas delafieldii respectively. Another strain R-12 identified as Pseudomonas sp. can degrade DBT completely but it cannot produce DBTO2 and HBP. The optimum temperature and initial pH for desulfurization by R-8 are 32℃ and 7.02 respectively and pH of the broth decreases during biodegradation. The growth of strain R-8 with different sulfur-sources indicates that this strain in DBT medium has an induction period of 3 days, which is longer than those with dimethylsulfoxide and MgSO4 media, but the growth rate of the bacterial strain in DBT is higher after the induction. Higher growth and desulfurization rates are observed in the DBT-hexadecane system than in both DBT-ethanol and DBT-dimethylformamide systems. Both strains of R-8 and R-9 also show higher desulfurization activities toward other sulfur-substrates, indicating that they have greater desulfurization potential in application.

  20. Bioreporter bacteria for landmine detection

    Energy Technology Data Exchange (ETDEWEB)

    Burlage, R.S. [Oak Ridge National Lab., TN (United States); Youngblood, T. [Frisby Technologies, Aiken, SC (United States); Lamothe, D. [American Technologies, Inc., Huntsville, AL (United States). Ordnance/Explosives Environmental Services Div.

    1998-04-01

    Landmines (and other UXO) gradually leak explosive chemicals into the soil at significant concentrations. Bacteria, which have adapted to scavenge low concentrations of nutrients, can detect these explosive chemicals. Uptake of these chemicals results in the triggering of specific bacterial genes. The authors have created genetically recombinant bioreporter bacteria that detect small concentrations of energetic chemicals. These bacteria are genetically engineered to produce a bioluminescent signal when they contact specific explosives. A gene for a brightly fluorescent compound can be substituted for increased sensitivity. By finding the fluorescent bacteria, you find the landmine. Detection might be accomplished using stand-off illumination of the minefield and GPS technology, which would result in greatly reduced risk to the deminers. Bioreporter technology has been proven at the laboratory scale, and will be tested under field conditions in the near future. They have created a bacterial strain that detects sub-micromolar concentrations of o- and p-nitrotoluene. Related bacterial strains were produced using standard laboratory protocols, and bioreporters of dinitrotoluene and trinitrotoluene were produced, screening for activity with the explosive compounds. Response time is dependent on the growth rate of the bacteria. Although frill signal production may require several hours, the bacteria can be applied over vast areas and scanned quickly, producing an equivalent detection speed that is very fast. This technology may be applicable to other needs, such as locating buried explosives at military and ordnance/explosive manufacturing facilities.

  1. 78 FR 64246 - Commerce in Explosives; List of Explosives Materials

    Science.gov (United States)

    2013-10-28

    ... isomorphously substituted inorganic salts. *ANFO . Aromatic nitro-compound explosive mixtures. Azide explosives.... Explosive mixtures containing tetranitromethane (nitroform). Explosive nitro compounds of aromatic... polyhydric alcohol explosives. Nitric acid and a nitro aromatic compound explosive. Nitric acid...

  2. Co-metabolic biodegradation of trichloroethylene by acclimated phenol degrading bacteria%三氯乙烯在苯酚菌中的共代谢降解性能研究

    Institute of Scientific and Technical Information of China (English)

    黄流雅; 胡娟; 张巍; 应维琪

    2012-01-01

    The batch experiments were carried out to investigate the co-metabolic degradation of trichloroethylene (TCE) by acclimated phenol degrading bacteria. The results showed that phenol was an essential co-substrate;the TCE degradation rate was dependent on the initial concentrations of phenol and TCE in co-metabolic degradation system. Active biodegradation of TCE followed after a short lag phase for building up a critical density of acclimated phenol degrading bacteria. A high initial TCE concentration of >9 mg/L inhibited its degradation;an initial phenol/TCE ratio of > 10-15 enhanced the final removal of TCE. The degradation curves of phenol and TCE were well represented by the Haldane inhibition model. The mixed culture bacteria had a higher affinity for phenol than TCE; phenol had competitive inhibition effect on TCE degradation;the inhibition effect of TCE to bacteria was observed in the high initial concentration runs.%通过生物降解实验考察三氯乙烯(TCE)在苯酚驯化微生物中的共代谢降解性能,并进行动力学分析.结果表明,苯酚是TCE苯酚共代谢过程必不可少的共代谢基质;TCE的共代谢降解与苯酚和TCE初始浓度有关.TCE在降解初期会出现一个短暂的迟滞期,TCE的大量降解要在苯酚被利用后才发生;高质量浓度TCE (>9 mg/L)对共代谢降解有抑制作用.苯酚/TCE(质量比)在10~15以上时,苯酚菌对TCE的去除率较大.Haldane模型能够很好地拟合苯酚和TCE的比降解速率.动力学分析表明,微生物对苯酚的亲和力要大于TCE,苯酚对TCE共降解具有竞争性抑制作用,TCE对微生物存在毒性抑制作用;结果证实了生物降解实验的结论.

  3. LABELING OF BIURET DEGRADING BACTERIA WITH GFP AND COLONIZATION OF THE BACTERIA IN CROP RHIZOSPHERE%缩二脲降解菌在作物根际的GFP标记示踪

    Institute of Scientific and Technical Information of China (English)

    平泉瑞; 陆艳娜; 黄为一

    2012-01-01

    通过三亲结合对缩二脲降解菌GW-1菌株成功进行了绿色荧光蛋白(Green fluorescent protein,GFP)基因标记,标记菌株命名为GW-1-GFP.实验证明外源质粒对宿主菌的生长未带来不利的影响,且经高效液相色谱测定该标记菌株降解缩二脲的能力与出发菌株无显著差异(p<0.05).经抗生素抗性和荧光追踪证明标记菌株GW-1-GFP能够很好地在土壤中定殖,第25天时在不同处理的土壤中标记菌株对缩二脲的降解能力都超过50%,45 d后该标记菌株在土壤中已难以检测.经标记菌株GW-1-GFP菌悬液浸润的小麦种子发芽后,通过荧光观察显示降解缩二脲的标记菌株GW-1-GFP在小麦根部定殖良好,且该标记菌株能在一定程度上缓解缩二脲对小麦的毒害作用.该研究为验证、追踪土壤中功能微生物菌剂与作物根部的亲和性和生态有效性提供了简易、直观的检测方法.%Strains of biuret-degrading bacteria GW-1 were successfully isolated and labeled with green fluorescent protein with the triparental mating method and then the GFP-tagged strains were named GW-1-GFP. The expression of GFP in Strain GW-1-GFP was visualized under the fluorescent microscope and its dynamics was analyzed and stability tested. It was found that heterogenous plasmid did not bring any adverse effect to growth of the host strain GW-1-GFP and the strain was stable. HPLC analysis did not show any significant difference (p < 0. 05 ) between the origin stain GW-1 and the tagged strain GW-1-GFP in biuret-degrading ability. The tagged strain GW-1-GFP, proved by the antibiotics resistance screening and fluorescence tracing, could colonize well in the soil and was found to have degraded 50% of the biuret in soil in all the treatments on D25 after the application of Strain GW-1-GFP. It was also found in the experiment that the tagged strain was safe to the environment and vanished from the soil after 45 days. Good colonization of Strain

  4. Identification of two high-efficiency hexadecane-degrading bacteria and their degradation characteristics%两株高效石油烃氧化菌的正十六烷降解特性

    Institute of Scientific and Technical Information of China (English)

    张洁; 王卫卫; 郭欣; 王楠; 陶发琴

    2013-01-01

    研究从长庆、延长油田油泥中分离出的两株高效石油烃氧化菌PDA2(红球菌属)和PDB3(假单胞菌属)对正十六烷的降解特性和各降解特性之间进行关联分析.测定菌株在不同温度、pH、底物浓度、接种量、盐度和H2O2条件下菌株对正十六烷的降解率,并测定降解过程中表面活性剂、乳化剂、酸的产量和细胞表面疏水性变化.PDB3在30℃,pH7,初始正十六烷浓度1%,接种量5%,H2O2600 mg/L时可以降解98.5%的正十六烷,PDA2在30℃,pH7,初始十六烷浓度1%,接种量5%,H2O2400 mg/L时,可以降解89.4%的正十六烷,PDB3培养72 h产生3.8 cm的排油圈、336mg/L的酸、55%的乳化率,PDA2培养72 h产生1.5 cm的排油圈、362 mg/L的酸、35%的乳化率,PDB3和PDA2在十六烷培养液中的疏水性与在葡萄糖培养液中的疏水性没有发生明显改变.在温度为45℃,盐度为1%~3%时,两株菌对正十六烷降解率超过50%,添加适量H2 O2促进菌株对正十六烷的降解;细胞产生的表面活性剂和乳化剂协同作用促进菌株对正十六烷的降解,表面活性剂的产生并没有增加菌株细胞表面的疏水性,疏水性弱(低于10%)的细胞产生的表面活性剂多.这两株自身产表面活性剂的菌株对后续石油烃降解的理论及应用研究具有重要意义.%To Study the hexadecane degradation characteristics of two high performance hydrocarbon oxidation bacteria strains of PDB3 (Pseudomonas sp.) and PDA2 (Rhodococcs s-p.) isolated from oil contaminated soil in Changqing and YanChang oil fields,and analyse the relationships among the characteristics.The characteristics of the two strains were conducted including etabolized surfactant,emulsifier,acid,the change of cell surface hydrophobicity and the hexadecane degradation rates under different temperature,pH,the concentration of hexadecane,inoculum size,salinity and H2O2 content.The degradation ratio of 1% hexadecane could

  5. Leidenfrost explosions

    CERN Document Server

    Moreau, F; Dorbolo, S

    2012-01-01

    We present a fluid dynamics video showing the behavior of Leidenfrost droplets composed by a mixture of water and surfactant (SDS, Sodium Dodecyl sulfate). When a droplet is released on a plate heated above a given temperature a thin layer of vapor isolates the droplet from the plate. The droplet levitates over the plate. This is called the Leidenfrost effect. In this work we study the influence of the addition of a surfactant on the Leidenfrost phenomenon. As the droplet evaporates the concentration of SDS rises up to two orders of magnitude over the Critical Micelle Concentration (CMC). An unexpected and violent explosive behavior is observed. The video presents several explosions taken with a high speed camera (IDT-N4 at 30000 fps). All the presented experiments were performed on a plate heated at 300{\\deg}C. On the other hand, the initial quantity of SDS was tuned in two ways: (i) by varying the initial concentration of SDS and (ii) by varying the initial size of the droplet. By measuring the volume of th...

  6. 一个硫酸盐还原细菌富集物对丁草胺的厌氧降解%Anaerobic degradation of butachlor by sulfate-reducing bacteria enrichment culture

    Institute of Scientific and Technical Information of China (English)

    叶央芳; 杜宇峰

    2000-01-01

    An enrichment culture of sulfate-reducing bacteria,capable of anaerabic degrading butachlor,was obtained.The degradation kinetics of butachlor by the enrichment culture was determined and the optimum concentration of butachlor,the optimum pH and temperature for degradation of butachlor were observed..%通过多次富集培养,得到一个能有效厌氧降解丁草胺的硫酸盐还原细菌(SRB)富集物,并对该富集物的生长动力学以及生长的最适丁草胺浓度、最适pH和最适温度作了探讨.

  7. 大连湾原油降解菌的分离和多样性分析%Isolation and diversity of crude oil-degrading bacteria from Dalian Bay

    Institute of Scientific and Technical Information of China (English)

    信艳娟; 吴佩春; 曹旭鹏; 薛松

    2013-01-01

    [目的]研究大连湾原油污染海域可培养原油降解菌的多样性,并获得新的原油降解菌.[方法]通过大连湾海水、海泥和海绵样品采集,以原油作为唯一碳源,培养、富集、分离筛选原油降解菌,根据16S rRNA基因序列确定其系统进化地位.[结果]通过形态观察和16S rRNA基因分析,共获得22个属的50株菌.其中,有6株菌的16S rRNA序列与最相近的菌株序列一致性仅为95%-97%,可能是潜在的新菌.单菌实验表明,45株菌具有石油降解能力.[结论]揭示了大连湾可培养原油降解菌的多样性,并获得了新的原油降解菌,为海洋石油污染的生物治理提供新资源.%[Objective] In order to investigate the diversity of crude oil-degrading bacteria in the seawater,mud and sponge samples from Dalian Bay,and obtain new oil-degrading bacteria.[Methods] Crude oil was used as sole carbon source to enrich and isolate the potential oil-degrading bacteria from samples of seawater,mud or sponge.Phylogenetic analysis was conducted by 16S rRNA gene sequences of the bacteria.[Results] After screening via morphological and 16S rRNA gene sequences analysis 50 strains belonging to 22 genera were obtained.Among them,6 strains shared 16S rRNA gene sequence identities of 95%-97% with the most similar strains,were speculated new species.Further experiments revealed oil-degrading capability of 45 strains.[Conclusion] This study demonstrated a high diversity of the cultivable oil-degrading bacteria in Dalian Bay,and obtained new resources in bioremediation of marine oil pollution.

  8. Chaotic Explosions

    CERN Document Server

    Altmann, Eduardo G; Tél, Tamás

    2015-01-01

    We investigate chaotic dynamical systems for which the intensity of trajectories might grow unlimited in time. We show that (i) the intensity grows exponentially in time and is distributed spatially according to a fractal measure with an information dimension smaller than that of the phase space,(ii) such exploding cases can be described by an operator formalism similar to the one applied to chaotic systems with absorption (decaying intensities), but (iii) the invariant quantities characterizing explosion and absorption are typically not directly related to each other, e.g., the decay rate and fractal dimensions of absorbing maps typically differ from the ones computed in the corresponding inverse (exploding) maps. We illustrate our general results through numerical simulation in the cardioid billiard mimicking a lasing optical cavity, and through analytical calculations in the baker map.

  9. Extrusion cast explosive

    Science.gov (United States)

    Scribner, Kenneth J.

    1985-01-01

    Improved, multiphase, high performance, high energy, extrusion cast explosive compositions, comprising, a crystalline explosive material; an energetic liquid plasticizer; a urethane prepolymer, comprising a blend of polyvinyl formal, and polycaprolactone; a polyfunctional isocyanate; and a catalyst are disclosed. These new explosive compositions exhibit higher explosive content, a smooth detonation front, excellent stability over long periods of storage, and lower sensitivity to mechanical stimulants.

  10. Chemical profiling of explosives

    NARCIS (Netherlands)

    G.M.H. Brust

    2014-01-01

    The primary goal of this thesis is to develop analytical methods for the chemical profiling of explosives. Current methodologies for the forensic analysis of explosives focus on identification of the explosive material. However, chemical profiling of explosives becomes increasingly important, as thi

  11. Separation of Petroleum Hydrocarbon Degrading Bacteria and its Application in Oily Sludge%石油烃降解菌的分离及在含油污泥中的应用

    Institute of Scientific and Technical Information of China (English)

    姚力芬; 李丹; 陈丽华; 李广彬; 孙盼盼; 李佳酿

    2015-01-01

    文章从甘肃陇东长庆油田污染严重的土壤中分离筛选得到六株石油烃降解菌,分别命名为a1、a2、a3、a4、a5和a6,对它们进行了常规鉴定,得到a1、a2、a3均为芽孢杆菌,a4、a6均为假单胞菌,a5为不动杆菌.通过菌剂的复活、发酵得到降解石油烃复合菌,并进行了微生物修复含油污泥的小试实验.结果表明,当土壤中的石油含量为50g/kg时,加入混合菌剂的石油降解率比没有加菌剂的降解效率高,添加4%菌剂后81d的降解率为90.20%,大于对照组(只添加有机肥)的降解率31.10%,说明该混合菌剂具有应用于实际石油污染土壤生物修复的潜力.%The isolation of six strains of petroleum degrading bacteria from contaminated Gansu Longdong Changqing Oilfield serious soil, which were named as A1, A2, A3, A4, A5 and A6 were carried out routine identification, A1, A2 and A3 were bacillus, A4, A6 were Pseudomonas A5, acinetobacter. Get the degradation of petroleum hydrocarbon compound bacteria through fermentation, resurrection, and carried out experiments of microbial remediation of oily sludge. The results show that when the oil content in soil was 50g/kg, adding oil degrading mixed inoculum rate than the degradation efficiency without inoculum, adding 4% agent 81D degradation rate was 90.20% higher than that of control group (add organic fertilizer) the degradation rate of 31.10%, indicating that the mixed bacteria agent is applied to the actual oil the potential for bioremediation of contaminated soil.

  12. Biodegradation of the Nitramine Explosive CL-20

    OpenAIRE

    Trott, Sandra; Nishino, Shirley F.; Hawari, Jalal; Spain, Jim C.

    2003-01-01

    The cyclic nitramine explosive CL-20 (2,4,6,8,10,12-hexanitro-2,4,6,8,10,12-hexaazaisowurtzitane) was examined in soil microcosms to determine whether it is biodegradable. CL-20 was incubated with a variety of soils. The explosive disappeared in all microcosms except the controls in which microbial activity had been inhibited. CL-20 was degraded most rapidly in garden soil. After 2 days of incubation, about 80% of the initial CL-20 had disappeared. A CL-20-degrading bacterial strain, Agrobact...

  13. Complete Genome Sequences of Pseudomonas monteilii SB3078 and SB3101, Two Benzene-, Toluene-, and Ethylbenzene-Degrading Bacteria Used for Bioaugmentation

    DEFF Research Database (Denmark)

    Dueholm, Morten Simonsen; Albertsen, Mads; D'Imperio, Seth;

    2014-01-01

    Pseudomonas monteilii SB3078 and SB3101 are benzene-, toluene-, and ethylbenzene-degrading strains used for bioaugmentation in relation to treatment of wastewater contaminated with petrochemical hydrocarbons. Complete genome sequencing of the bioaugmentation strains confirms that they are very...

  14. Understanding vented gas explosions

    Energy Technology Data Exchange (ETDEWEB)

    Lautkaski, R. [VTT Energy, Espoo (Finland). Energy Systems

    1997-12-31

    The report is an introduction to vented gas explosions for nonspecialists, particularly designers of plants for flammable gases and liquids. The phenomena leading to pressure generation in vented gas explosions in empty and congested rooms are reviewed. The four peak model of vented gas explosions is presented with simple methods to predict the values of the individual peaks. Experimental data on the external explosion of dust and gas explosions is discussed. The empirical equation relating the internal and external peak pressures in vented dust explosions is shown to be valid for gas explosion tests in 30 m{sup 3} and 550 m{sup 3} chambers. However, the difficulty of predicting the internal peak pressure in large chambers remains. Methods of explosion relief panel design and principles of vent and equipment layout to reduce explosion overpressures are reviewed. (orig.) 65 refs.

  15. Widespread occurrence of the tfd-II genes in soil bacteria revealed by nucleotide sequence analysis of 2,4-dichlorophenoxyacetic acid degradative plasmids pDB1 and p712.

    Science.gov (United States)

    Kim, Dong-Uk; Kim, Min-Sun; Lim, Jong-Sung; Ka, Jong-Ok

    2013-05-01

    Variovorax sp. strain DB1 and Pseudomonas pickettii strain 712 are 2,4-dicholorophenoxy-acetic acid (2,4-D)-degrading bacteria, which were isolated from agricultural soils in Republic of Korea and USA, respectively. Each strain harbors a 2,4-D degradative plasmid and is able to utilize 2,4-D as the sole source of carbon for its growth. The 2,4-D degradative plasmid pDB1 of strain DB1 consisted of a 65,269-bp circular molecule with a G+C content of 66.23% and had 68 ORFs. The 2,4-D degradative plasmid p712 of strain 712 was composed of a 62,798-bp circular molecule with a 62.11% G+C content and had 62 ORFs. The plasmids pDB1 and p712 share significantly homologous 2,4-D degradative genes with high similarity to the tfdR, tfdB-II, tfdC-II, tfdD-II, tfdE-II, tfdF-II, tfdK and tfdA genes of plasmid pJP4 of Alcaligenes eutrophus isolated from Australia. In a phylogenetic analysis with trfA, traL, and trbA genes, pDB1 belonged to IncP-1β with pJP4, while p712 belonged to IncP-1ε with pKJK5 and pEMT3. The results indicated that, in spite of the differences in their backbone regions, the 2,4-D catabolic genes of the two plasmids were closely related and also related to the well-known 2,4-D degradative plasmid pJP4 even though all were isolated from different geographic regions. Other similarities in the genetic organization and the presence of IS1071 suggested that these catabolic genes may be on a transposable element, leading to widespread occurrence in soil bacteria. PMID:23376020

  16. Fast Chromatographic Method for Explosive Profiling

    Directory of Open Access Journals (Sweden)

    Pierre-Hugues Stefanuto

    2015-05-01

    Full Text Available Security control is becoming a major global issue in strategic locations, such as airports, official buildings, and transit stations. The agencies responsible for public security need powerful and sensitive tools to detect warfare agents and explosives. Volatile signature detection is one of the fastest and easiest ways to achieve this task. However, explosive chemicals have low volatility making their detection challenging. In this research, we developed and evaluated fast chromatographic methods to improve the characterization of volatile signatures from explosives samples. The headspace of explosives was sampled with solid phase micro-extraction fiber (SPME. Following this step, classical gas chromatography (GC and comprehensive two-dimensional GC (GC×GC were used for analysis. A fast GC approach allows the elution temperature of each analyte to be decreased, resulting in decreased thermal degradation of sensitive compounds (e.g., nitro explosives. Using fast GC×GC, the limit of detection is further decreased based on the cryo-focusing effect of the modulator. Sampling of explosives and chromatographic separation were optimized, and the methods then applied to commercial explosives samples. Implementation of fast GC methods will be valuable in the future for defense and security forensics applications.

  17. Characterization of N-acylhomoserine lactone-degrading bacteria associated with the Zingiber officinale (ginger rhizosphere: Co-existence of quorum quenching and quorum sensing in Acinetobacter and Burkholderia

    Directory of Open Access Journals (Sweden)

    Chhabra Siri

    2011-03-01

    Full Text Available Abstract Background Cell-to-cell communication (quorum sensing (QS co-ordinates bacterial behaviour at a population level. Consequently the behaviour of a natural multi-species community is likely to depend at least in part on co-existing QS and quorum quenching (QQ activities. Here we sought to discover novel N-acylhomoserine lactone (AHL-dependent QS and QQ strains by investigating a bacterial community associated with the rhizosphere of ginger (Zingiber officinale growing in the Malaysian rainforest. Results By using a basal growth medium containing N-(3-oxohexanoylhomoserine lactone (3-oxo-C6-HSL as the sole source of carbon and nitrogen, the ginger rhizosphere associated bacteria were enriched for strains with AHL-degrading capabilities. Three isolates belonging to the genera Acinetobacter (GG2, Burkholderia (GG4 and Klebsiella (Se14 were identified and selected for further study. Strains GG2 and Se14 exhibited the broadest spectrum of AHL-degrading activities via lactonolysis while GG4 reduced 3-oxo-AHLs to the corresponding 3-hydroxy compounds. In GG2 and GG4, QQ was found to co-exist with AHL-dependent QS and GG2 was shown to inactivate both self-generated and exogenously supplied AHLs. GG2, GG4 and Se14 were each able to attenuate virulence factor production in both human and plant pathogens. Conclusions Collectively our data show that ginger rhizosphere bacteria which make and degrade a wide range of AHLs are likely to play a collective role in determining the QS-dependent phenotype of a polymicrobial community.

  18. Draft Genome Sequences of Pseudomonas fluorescens BS2 and Pusillimonas noertemannii BS8, Soil Bacteria That Cooperate To Degrade the Poly- -D-Glutamic Acid Anthrax Capsule

    KAUST Repository

    Stabler, R. A.

    2013-01-24

    A mixed culture of Pseudomonas fluorescens BS2 and Pusillimonas noertemannii BS8 degraded poly-γ-d-glutamic acid; when the 2 strains were cultured separately, no hydrolytic activity was apparent. Here we report the draft genome sequences of both soil isolates.

  19. Draft Genome Sequences of Pseudomonas fluorescens BS2 and Pusillimonas noertemannii BS8, Soil Bacteria That Cooperate To Degrade the Poly-γ-d-Glutamic Acid Anthrax Capsule.

    Science.gov (United States)

    Stabler, Richard A; Negus, David; Pain, Arnab; Taylor, Peter W

    2013-01-01

    A mixed culture of Pseudomonas fluorescens BS2 and Pusillimonas noertemannii BS8 degraded poly-γ-d-glutamic acid; when the 2 strains were cultured separately, no hydrolytic activity was apparent. Here we report the draft genome sequences of both soil isolates.

  20. Degradation and mineralization of petroleum by two bacteria isolated from coastal waters. Degradation and mineralization of petroleum in sea water: limitation by nitrogen and phosphorus. Technical report No. 2, January-December 1971

    Energy Technology Data Exchange (ETDEWEB)

    Atlas, R.M.; Bartha, R.

    1971-12-31

    Within the framework of a study on the oil biodegradation potential of the sea the ability of a Flavobacterium sp. and Brevibacterium sp. to metabolize a paraffinic crude oil and a chemically defined hydrocarbon mixture was investigated. Major components of the crude oil were identified by combination gas chromatography and mass spectrometry. The rate and extent of total hydrocarbon biodegradation was measured. Degradation started after a 2 to 4 day lag period, and reached its maximum within two weeks. At this time up to 60% of the crude oil was degraded. n-Paraffins were preferentially degraded as compared to branched chain hydrocarbons. Biodegradation and mineralization of petroleum, added at 1% (v/v) to freshly collected sea water, were measured using gas-liquid chromatographic, residual weight, and CO/sub 2/-evolution techniques. Only 3% of the added petroleum was biodegraded and 1% was mineralized in unamended sea water after 18 days and incubation. Added nitrate, phosphate supplements in combination increased petroleum biodegradation and mineralization. Attempts to clean up oil spills with the aid of microorganisms should take into consideration the nutritional deficiencies of sea water.

  1. Degradation of copepod fecal pellets

    DEFF Research Database (Denmark)

    Poulsen, Louise K.; Iversen, Morten

    2008-01-01

    from 22% d(-1) (July 2005) to 87% d(-1) (May). Protozooplankton (dinoflagellates and ciliates) in the size range of 20 to 100 mu m were the key degraders of the fecal pellets, contributing from 15 to 53% of the total degradation rate. Free-living in situ bacteria did not affect pellet degradation rate...

  2. Research on the Screening of Degrading Bacteria & Effect of Additives on the Film Degradation of PVA%聚乙烯醇薄膜降解菌的筛选及助剂的影响研究

    Institute of Scientific and Technical Information of China (English)

    郝喜海; 衣潇鹏; 李丁; 李贞; 邓靖; 彭笑

    2015-01-01

    利用聚乙烯醇( PVA)为唯一碳源的筛选培养基对PVA包装薄膜工厂排污口处的活性污泥进行筛选,并研究薄膜助剂对PVA降解性的影响。通过透明圈实验对菌株进行筛选,并经形态学及显微镜观察进行初步鉴定。从定性和定量角度,分别利用透明圈实验和紫外分光光度法研究薄膜助剂对PVA降解性的影响。结果表明:10株PVA降解菌中降解效果最佳的菌株XP-02鉴定为青霉菌;研究还发现,当PVA包装薄膜中的助剂浓度为0.05 g/L时,均能提高PVA的降解效果。其中, PVA包装薄膜中添加增塑剂(聚乙二醇)、表面活性剂(十二烷基苯磺酸钠)、乳化剂(吐温-80)可以使PVA的降解率分别提高5.01%,8.67%,11.21%。通过在PVA包装薄膜中添加适量聚乙二醇、十二烷基苯磺酸钠、吐温-80的可以提高PVA的生物降解率,但各组分最适比例还需要进一步研究进行确定。%Poly vinyl alcohol ( PVA) was used as the sole carbon source in the medium to isolate PVA degrading bacterium from an activated sludge of water soluble PVA packaging film factory. The effect of additives on PVA degradability was researched. The PVA degradable bacterium was screened after transparent circle experiment and was preliminary identified through morphology and optical microscope observation. From the perspective of qualitative and quantitative, the PVA degradable influence of film additives was investigated after transparent circle experiment and ultraviolet spectroscopy respectively. The results showed that the strain XP-02 had best degradation effect in ten PVA degradable bacterium and was preliminary identified as penicillium. Additives in the PVA packaging film can increase the degradable effect. By increasing the plasticizer polyethylene glycol ( PEG) , surface active agent sodium dodecyl benzene sulfonate ( SDBS ) , and emulsifying agent ( tween-80 ) , the biodegradation rate of PVA was increased by 5. 01%, 8. 67

  3. The detrimental influence of bacteria (E. coli, Shigella and Salmonella) on the degradation of organic compounds (and vice versa) in TiO2 photocatalysis and near-neutral photo-Fenton processes under simulated solar light.

    Science.gov (United States)

    Moncayo-Lasso, Alejandro; Mora-Arismendi, Luis Enrique; Rengifo-Herrera, Julián Andrés; Sanabria, Janeth; Benítez, Norberto; Pulgarin, César

    2012-05-01

    TiO2 photocatalytic and near-neutral photo-Fenton processes were tested under simulated solar light to degrade two models of natural organic matter - resorcinol (R) (which should interact strongly with TiO2 surfaces) and hydroquinone (H) - separately or in the presence of bacteria. Under similar oxidative conditions, inactivation of Escherichia coli, Shigella sonnei and Salmonella typhimurium was carried out in the absence and in the presence of 10 mg L(-1) of R and H. The 100% abatement of R and H by using a TiO2 photocatalytic process in the absence of bacteria was observed in 90 min for R and in 120 min for H, while in the presence of microorganisms abatement was only of 55% and 35% for R and H, respectively. Photo-Fenton reagent at pH 5.0 completely removed R and H in 40 min, whereas in the presence of microorganisms their degradation was of 60% to 80%. On the other hand, 2 h of TiO2 photocatalytic process inactivated S. typhimurium and E. coli cells in three and six orders of magnitude, respectively, while S. sonnei was completely inactivated in 10 min. In the presence of R or H, the bacterial inactivation via TiO2 photocatalysis was significantly decreased. With photo-Fenton reagent at pH 5 all the microorganisms tested were completely inactivated in 40 min of simulated solar light irradiation in the absence of organics. When R and H were present, bacterial photo-Fenton inactivation was less affected. The obtained results suggest that in both TiO2 and iron photo-assisted processes, there is competition between organic substances and bacteria simultaneously present for generated reactive oxygen species (ROS). This competition is most important in heterogeneous systems, mainly when there are strong organic-TiO2 surface interactions, as in the resorcinol case, suggesting that bacteria-TiO2 interactions could play a key role in photocatalytic cell inactivation processes. PMID:22370626

  4. Isolation and Identification of Lactic Acid Bacteria of Degradation of Nitrite%降解亚硝酸盐乳酸菌的分离与鉴定

    Institute of Scientific and Technical Information of China (English)

    韩梅; 王衍强; 彭帅; 崔艺久; 王悦

    2011-01-01

    Isolated Lactobacillus from water was used to degrade nitrite. The strains wyq-1, wyq-2 and wyq-3 were identified by the characteristics of morphology, physiology and biochemistrytests and 16S rRNA sequence was analysed by molecular biological method. The degradation nitritea ability was based on GB/T 5009.33-2008. The three strains were identified as Lactobacillus fermentum, Lactobacillus acidophilus and Lactobacillus plantarum. The degradation nitritea ability was detected in the hemoglobin MRS liquid medium and pork medium, the degradation rate of wyq-3 was 87.0% and 69.4%. Nitritea in meat products can be degradated well by Lactobacillus.%从水体中分离能够降解亚硝酸盐的乳酸菌.参照《伯杰细菌鉴定手册》对分离出的wyq-1、wyq-2和wyq-3株菌进行生理生化特性鉴定,并利用分子生物学方法进行16SrRNA序列分析,参照国家标准方法GB/T 5009.33-2008中的格里斯比色法测定降解亚硝酸盐的能力.结果表明:3株菌均为乳杆菌属( Lactobacillus),wyq-1为发酵乳杆菌(Lactobacillus fermentum)、wyq-2为嗜酸乳杆菌(Lactobacillus acidophilus)、wyq-3为植物乳杆菌(Lactobacillus plantarum).对3株菌在添加血红素的MRS液体培养基中和猪肉培养基中降解亚硝酸盐的能力进行了测试,菌株wyq-3降解能力最好,降解率分别为87.0%和69.4%.研究结果表明用乳酸菌降解肉制品中的亚硝酸盐可以取得较好的效果.

  5. Making lignin accessible for anaerobic digestion by wet-explosion pretreatment

    DEFF Research Database (Denmark)

    Ahring, Birgitte Kiær; Biswas, Rajib; Ahamed, Aftab;

    2015-01-01

    Lignin is a major part of the recalcitrant fraction of lignocellulose and in nature its degradation occurs through oxidative enzymes along with microbes mediated oxidative chemical actions. Oxygen assisted wet-explosion pretreatment promotes lignin solubility and leads to an increase biodegradation.......6% for untreated material indicating the oxygen assisted explosion promoted lignin degradation....

  6. Analysis of Soil Micro-environment in Nanyang Oil Field and Screening of Oil Degrading Bacteria%南阳油污土壤微环境分析及石油降解菌筛选

    Institute of Scientific and Technical Information of China (English)

    押辉远; 易力; 周胜利; 张祥胜

    2011-01-01

    Some physical and chemical properties of the polluted soil on Nanyang oil field were investigated, and the influence of the physical and chemical factors on the micro-organisms was analyzed. In addition, strains which had stronger degrading capacity were screened from oil polluted soil through the method of enrichment culture, using petroleum as the sole carbon source. The result indicated that the pH index and water content of the soil on Nanyang oil field was comparatively beneficial for the degradation of petroleum. The amount of bacteria in the polluted soil on Nanyang oil field was positively correlated with the degree of oil polution. Twenty kinds of hydrocarbon-degrading bacteria were isolated from the polluted soil.Among them, NY-2#, NY-7#, and the NY-17# strains had better degrading capacity, whose respective petroleumdegradation rate achieved 47.8%, 51.2% and 46.3% respectively.%测定了南阳油田石油污染土壤的一些理化性质,分析各种理化因子对其中的微生物的影响,并通过用以石油为单一碳源的培养基富集培养的方法从油污土壤中筛选降油菌株,还对它们的降油能力进行了评价.结果表明,南阳油田油污土壤的pH值、含水率等指标较有利于原油的降解,且南阳油田石油污染的土壤中的细菌数量与土壤的污染程度呈正相关.在这些油污土壤中共筛选到20株石油降解菌,其中NY-2、NY-7、和NY-17菌株的除油能力较强,它们的石油降解率分别达到47.8%、51.2%和463%.

  7. Isolation, Identification and Degradation Characteristics Analysis of Fomesafen Degradation Bacteria%氟磺胺草醚降解菌F-12的分离鉴定及降解特性研究

    Institute of Scientific and Technical Information of China (English)

    吴秋彩; 刘艳; 王晓萍

    2012-01-01

    In order to study the mechanism of bioremediation in fomesafen-contaminated soil, a fomesafen degradable strain was obtained from fomesafen -contaminated soil. F-12. A bacterium which could use fomesafen as sole carbon source for growth, was isolated from the soil of long term applied with fomesafen by enrichment culture. Base on colony morphology, physiological and biochemical characteristics and 16S rDNA gene sequence analysis, the strain F-12 was identified preliminarily as Klebsiella sp.. The effect of initial concentration of fomesafen, inoculation amount, temperature and pH on degradation efficiencies was studied. The optimal degrading conditions were: initial concentration of fomesafen 100 mg/L, inoculation amount of 15%, pH 6.0, respectively, under the optimal conditions, the degrading efficiency could reach more than 80% after 2 days at 35T, holding the potential of being applied in the fomesafen bioremediation of contaminated soils.%为了研究氟磺胺草醚污染土壤的生物修复机理,利用富集培养技术从长期施用氟磺胺草醚的土壤中分离得到1株能够以氟磺胺草醚为唯一碳源生长的细菌,命名为F-12.通过菌落形态、生理生化特性和16S rDNA基因序列分析,初步鉴定菌株F-12为克雷伯氏菌属(Klebsiella sp.).并分析了氟磺胺草醚的初始浓度、接种量、温度和pH对菌株F-12降解氟磺胺草醚效果的影响,确定了最佳降解条件.结果显示,该菌在氟磺胺草醚浓度为100 mg/L、接种量为15%、pH 6.0、温度35℃条件下,培养2天后对氟磺胺草醚的降解效率达到80%以上.具有应用到氟磺胺草醚污染土壤生物修复的能力.

  8. Screening and Identification of the Degradation Bacteria of Omethoate%氧化乐果降解菌的筛选与鉴定

    Institute of Scientific and Technical Information of China (English)

    夏志光; 李雪峰; 郭丹; 刘元

    2014-01-01

    By using seed culture medium,soil samples which were collected from experimental forest farm of the Northeast Forestry University were screened;1 1 strains which can degrading omethoate were obtained;through two comprehensive indicators(growth speed of strains and inhibition rate),the fungi (DL04,DL16,DL11 and DL03) which has better degradation effect were obtained.Finally,the strains which have higher degrading enzymes were conducted morphological identification;these four strains are Trichodermaharzianum,Trichoderma sp.,Penicil-liumfuniculosum and Mucor hiemalis,respectively.The research can provides resource utilization for residue of omethoate and rational use of omethoate.%采用种子培养基对采自东北林业大学试验林场的土样进行初筛,获得11株能够降解氧化乐果的菌株;通过菌种生长速度与抑制率2项指标综合评价获得降解效果较好的真菌为DL04、DL16、DL11和DL03。最后对产生降解酶较高的菌株进行形态学鉴定,这4株菌种分别为哈茨木霉(Trichoderma harzianum)、木霉属(Trichoderma sp.)、绳状青霉(Penicilliumfuniculosum)和冻土毛霉(Mucorhiemalis)。该研究为植物氧化乐果残渣的资源化利用及氧化乐果的合理利用提供依据。

  9. tfdA-Like Genes in 2,4-Dichlorophenoxyacetic Acid-Degrading Bacteria Belonging to the Bradyrhizobium-Agromonas-Nitrobacter-Afipia Cluster in α-Proteobacteria

    OpenAIRE

    Itoh, Kazuhito; Kanda, Rie; Sumita, Yoko; Kim, Hongik; Kamagata, Yoichi; Suyama, Kousuke; Yamamoto, Hiroki; Hausinger, Robert P.; Tiedje, James M.

    2002-01-01

    The 2,4-dichlorophenoxyacetate (2,4-D)/α-ketoglutarate dioxygenase gene (tfdA) homolog designated tfdAα was cloned and characterized from 2,4-D-degrading bacterial strain RD5-C2. This Japanese upland soil isolate belongs to the Bradyrhizobium-Agromonas-Nitrobacter-Afipia cluster in the α subdivision of the class Proteobacteria on the basis of its 16S ribosomal DNA sequence. Sequence analysis showed 56 to 60% identity of tfdAα to representative tfdA genes. A MalE-TfdAα fusion protein expressed...

  10. Effect of birch (Betula spp.) and associated rhizoidal bacteria on the degradation of soil polyaromatic hydrocarbons, PAH-induced changes in birch proteome and bacterial community

    Energy Technology Data Exchange (ETDEWEB)

    Tervahauta, Arja I. [Department of Biosciences, University of Kuopio, P.O. Box 1627, FIN-70211 Kuopio (Finland)], E-mail: arja.tervahauta@uku.fi; Fortelius, Carola [EVTEK University of Applied Sciences, Vantaa (Finland); Tuomainen, Marjo [Department of Biosciences, University of Kuopio, P.O. Box 1627, FIN-70211 Kuopio (Finland); Akerman, Marja-Leena [EVTEK University of Applied Sciences, Vantaa (Finland); Rantalainen, Kimmo [Department of Biosciences, University of Kuopio, P.O. Box 1627, FIN-70211 Kuopio (Finland); Sipilae, Timo [Department of Biological and Environmental Sciences, University of Helsinki (Finland); Lehesranta, Satu J.; Koistinen, Kaisa M.; Kaerenlampi, Sirpa [Department of Biosciences, University of Kuopio, P.O. Box 1627, FIN-70211 Kuopio (Finland); Yrjaelae, Kim [Department of Biological and Environmental Sciences, University of Helsinki (Finland)

    2009-01-15

    Two birch clones originating from metal-contaminated sites were exposed for 3 months to soils (sand-peat ratio 1:1 or 4:1) spiked with a mixture of polyaromatic hydrocarbons (PAHs; anthracene, fluoranthene, phenanthrene, pyrene). PAH degradation differed between the two birch clones and also by the soil type. The statistically most significant elimination (p {<=} 0.01), i.e. 88% of total PAHs, was observed in the more sandy soil planted with birch, the clearest positive effect being found with Betula pubescens clone on phenanthrene. PAHs and soil composition had rather small effects on birch protein complement. Three proteins with clonal differences were identified: ferritin-like protein, auxin-induced protein and peroxidase. Differences in planted and non-planted soils were detected in bacterial communities by 16S rRNA T-RFLP, and the overall bacterial community structures were diverse. Even though both represent complex systems, trees and rhizoidal microbes in combination can provide interesting possibilities for bioremediation of PAH-polluted soils. - Birch can enhance degradation of PAH compounds in the rhizosphere.

  11. 76 FR 64974 - Commerce in Explosives; List of Explosive Materials (2011R-18T)

    Science.gov (United States)

    2011-10-19

    ... inorganic salts. * ANFO . Aromatic nitro-compound explosive mixtures. Azide explosives. B Baranol. Baratol...). Explosive nitro compounds of aromatic hydrocarbons. Explosive organic nitrate mixtures. Explosive powders. F... explosive. Nitrated polyhydric alcohol explosives. Nitric acid and a nitro aromatic compound...

  12. 75 FR 1085 - Commerce in Explosives; List of Explosive Materials (2009R-18T)

    Science.gov (United States)

    2010-01-08

    .... *ANFO . Aromatic nitro-compound explosive mixtures. Azide explosives. B Baranol. Baratol. BEAF . Black...). Explosive nitro compounds of aromatic hydrocarbons. Explosive organic nitrate mixtures. Explosive powders. F... explosive. Nitrated polyhydric alcohol explosives. Nitric acid and a nitro aromatic compound...

  13. Screening and Isolation of Bacteria Degrading Herbicide Glyphosate and Its Degradation Efficiency%草甘膦降解菌的分离及其降解效能研究

    Institute of Scientific and Technical Information of China (English)

    尚轶; 沈慧敏; 杨顺义; 汪春益; 吴永波

    2011-01-01

    从受草甘膦污染严重的土壤中富集、筛选并分离到1株降解菌G1,采用室内测定方法,对该菌株的生物学特性、对草甘膦的降解效能及对草甘膦的耐受性进行了初步研究.结果表明,菌株G1能以草甘膦作为惟一的碳源生长.在含有草甘膦的培养基上其降解率达71.76%,最适抗草甘膦浓度为300mmol/L,对草甘膦的抗性浓度在500mmol/L以下.%Glyphosate is commonly used as an organophosphate herbicide in the world. But the continuous usage of the herbicide will pollute environment seriously. Biodegradation is an effective way of bioremedying the polluted soil. One strain capable of degrading herbicide glyphosate was screened and isolated from the glyphosate polluted soil. The strain Gl was selected and primarily studied. The results showed that glyphosate could be used as the sole carbon source of G1 ,and the degradation rate of G1 were 71.76%. G1 could grow exuberantly in glyphosate solution of 300 mmol/L, but it would be restrict when the glyphosate solution was above 500 mmol/L.

  14. Effect of birch (Betula spp.) and associated rhizoidal bacteria on the degradation of soil polyaromatic hydrocarbons, PAH-induced changes in birch proteome and bacterial community.

    Science.gov (United States)

    Tervahauta, Arja I; Fortelius, Carola; Tuomainen, Marjo; Akerman, Marja-Leena; Rantalainen, Kimmo; Sipilä, Timo; Lehesranta, Satu J; Koistinen, Kaisa M; Kärenlampi, Sirpa; Yrjälä, Kim

    2009-01-01

    Two birch clones originating from metal-contaminated sites were exposed for 3 months to soils (sand-peat ratio 1:1 or 4:1) spiked with a mixture of polyaromatic hydrocarbons (PAHs; anthracene, fluoranthene, phenanthrene, pyrene). PAH degradation differed between the two birch clones and also by the soil type. The statistically most significant elimination (p birch, the clearest positive effect being found with Betula pubescens clone on phenanthrene. PAHs and soil composition had rather small effects on birch protein complement. Three proteins with clonal differences were identified: ferritin-like protein, auxin-induced protein and peroxidase. Differences in planted and non-planted soils were detected in bacterial communities by 16S rRNA T-RFLP, and the overall bacterial community structures were diverse. Even though both represent complex systems, trees and rhizoidal microbes in combination can provide interesting possibilities for bioremediation of PAH-polluted soils.

  15. Explosive Technology Group

    Data.gov (United States)

    Federal Laboratory Consortium — The Explosive Technology Group (ETG) provides diverse technical expertise and an agile, integrated approach to solve complex challenges for all classes of energetic...

  16. 1株乙羧氟草醚降解菌的分离鉴定与降解特性研究%Isolation and Identification of a Strain of Fluoroglycofen Degradation Bacteria and Its Degradation Research

    Institute of Scientific and Technical Information of China (English)

    陈晓娟; 王青玲

    2011-01-01

    In this study, a bacterial strain using fluoroglycofen as sole carbon source was isolated from activated sludge of wastewater treatment tank in an insecticide factory. It was identified by physiological-biochemical identification and 16S rRNA gene sequences homology analysis, it belonged to Staphylococcus saprophyticus. The strain was named as YSC-1 and its growth was studied. The results showed that the optimum growth conditions for YSC-1 were 30℃ and pI-I 7. 0. The concentration of Nacl affected the growth significantly. The strain degraded fluoroglycofen at temperature of 20℃ -40℃ with the maximum fluoroglyoofen degrading rate at 30℃ and 7. 0, respectively. Increasing concentration of tluoroglycofen resulted in toxic effect on strain YSC-lto reduced the biodegradation rate. Increasing inoculums volume would speed up the degradation of tluoroglycofen. For industrial wastewater treated for seven days with final fluoroglycofen concentration of 100 mg/L, the removal rate reached 91.62%, which showed that the strain YSC-1 had a good application prospect for treatment of wastcwater.%本研究从某农药厂污水处理池的活性污泥中分离得到1株能以乙羧氟草醚为唯一碳源生长的菌株。经生理生化鉴定和16SrRNA基因序列同源性分析,将此菌株初步鉴定为腐生葡萄球茵(Staphylococcussaprophyticus),并命名为YSC.1。对菌株YSC.1的生长特性研究表明:茵株的最佳生长温度和pH分别为30℃、7.0;NaCI浓度对菌株YSC-1生长有较大的影响。菌株在20℃-40℃之间均能降解乙羧氟草醚,在30%1、pH7.0的条件下对乙羧氟草醚的降解率最高;增加乙羧氟草醚的浓度会对菌株产生毒害作用,降低其降解率;提高接种量可以加快乙羧氟草醚的降解。在乙羧氟草醚终浓度为100mg/L的工业废水经7d处理后,乙羧氟草醚的去除率达91.62%,说明菌株YSC-1在废水处理中具有很好的应用前景。

  17. 新疆油污土壤中石油烃降解菌筛选及鉴定%Screen and identification of oH-degrading bacteria from oil polluted soil in Xingjiang

    Institute of Scientific and Technical Information of China (English)

    孙玉萍; 王红英; 刘素辉; 倪萍; 马海梅

    2011-01-01

    Objective To isolate and identify petroleum-degrading bacteria from oil-polluted soil in Karamay of Xinjiang Uyghur Autonomous Region. Methods By enriching the polluted soil with petroleum hydrocarbons as the only carbon source,the oil-degradation bacterium from oil-contaminated soil was screened and identified by its 16S rDNA sequencing. Then basic local alignment search tool( BLAST) was used to indicate the sequence of the isolates from the GenBank. Results Totally 18 bacteria strains were isolated and identified from oil-polluted soil. The sequence of its 16S rDNA indicated that there were 98% of homology to the representative strains. The main strain were Pseudomonas sp. , Planococcus sp. , Arthrobacter sp. ,Psychrobacter sp. ,Brevibacillus agri sp. ,and Brevundimonas sp.. The bacteria strains from different oil-polluted soil were different and there were more bacteria strains in heavy oil-polluted soil. Conclusion The main strain was Pseudomonas sp. In oil-polluted soid and the bacteria strains were different in different oil-polluted soil.%目的 从新疆克拉玛依油田油污土壤中筛选具有降解能力的菌株,为今后构建本源石油降解微生物菌群提供技术支持和菌种储备.方法通过以石油烃为唯一碳源的选择培养基的分离培养,获得能够利用石油烃为碳源的菌株,并通过16S rDNA序列测定方法对菌株进行鉴定.结果分离得到18株能以石油作为唯一碳源和能源的石油降解菌株,通过序列分析,初步鉴定为假单胞菌属(Pseudomonas sp.)、动性球菌属(Planococcus sp.)、节杆菌属(Arthrobacter sp.)、嗜冷杆菌(Psychrobacter sp.)、短杆菌属(Brevibacillus agri sp.)等5类.在不同土壤中分离出的降解菌株不同,含油量较高的土壤中种类较多.结论新疆克拉玛依油田油污土壤中的石油降解菌株以假单胞菌属为主,而且随着污染严重程度的不同降解菌株的种类也不同.

  18. 影响降解菌W2修复异噁草酮污染土壤的三种因子的优化%Optimization of three factors affecting clomazone degradation in contaminated soils by degrading bacteria W2

    Institute of Scientific and Technical Information of China (English)

    刘亚光; 刘蕊; 唐广顺

    2011-01-01

    [Objective] To optimize the conditions for clomazone degradation in contaminated soils by degrading bacteria W2. [Method] Three factors affecting degradation rate were studied, including the soil moisture content,the amount of inoculation and fertilizer used. Based on the bioassay method, the degradation rates of bacteria W2 under different conditions were compared by using orthogonally rotational combination design. [Result] Mathematical regression model for clomazone degradation was established as follows: y= 62. 363 9 + 5. 872 8 × C1 —4.494 1 × C2 C3 — 1.262 1× C12 —4. 076 7 × C22. The results demonstrated that the significance order affecting degradation rate was: the soil moisture content, the amount of fertilize used and the amount of inoculation. [Conclusion] When the amount of inoculation ranged from 8.19 mL/kg to 11.81 mL/kg, soil moisture content ranged from 18.6% to 20.84%, and the amount of fertilizer used ranged from 1.83 g/kg to 2.52 g/kg, the degradation rate was above 60% in air-dried soils containing 500 μg/kg clomazone after 30 days, close to the highest degradation rate 65.56%.%[目的]确定降解菌W2对土壤中异噁草酮的最优生物修复条件.[方法]采用3因素5水平正交旋转组合设计,室外盆栽生物测定方法,研究降解菌W2接种量、土壤含水量和肥料添加量3种田间可控因子对降解菌W2修复异噁草酮污染土壤效果的影响.[结果]确定修复条件的优化数学回归模型为:y=62.3639+5.8728×C1-4.4941×C2C3-1.2621×C(2)1-4.0767×C(2)2,不同因子对土壤修复影响大小顺序依次为土壤含水量、肥料添加量、降解菌W2接种量.[结论]降解菌W2对土壤中异噁草酮的最优生物修复条件为:降解菌W2接种量8.19~11.81mL/㎏(A650=0.4),土壤含水量18.6%~20.84%,肥料添加量1.83~2.52g/㎏.在此范围内降解菌W2对异噁草酮有效成分浓度为500μg/㎏的风干土壤30d后的降解率可达60%以上,可接近

  19. Metagenomic insights into the RDX-degrading potential of the ovine rumen microbiome.

    Directory of Open Access Journals (Sweden)

    Robert W Li

    Full Text Available The manufacturing processes of royal demolition explosive (RDX, or hexahydro-1,3,5-trinitro-1,3,5-triazine, have resulted in serious water contamination. As a potential carcinogen, RDX can cause a broad range of harmful effects to humans and animals. The ovine rumen is capable of rapid degradation of nitroaromatic compounds, including RDX. While ruminal RDX-degrading bacteria have been identified, the genes and pathways responsible for RDX degradation in the rumen have yet to be characterized. In this study, we characterized the metabolic potential of the ovine rumen using metagenomic approaches. Sequences homologous to at least five RDX-degrading genes cloned from environmental samples (diaA, xenA, xenB, xplA, and xplB were present in the ovine rumen microbiome. Among them, diaA was the most abundant, likely reflective of the predominance of the genus Clostridium in the ovine rumen. At least ten genera known to harbor RDX-degrading microorganisms were detectable. Metagenomic sequences were also annotated using public databases, such as Pfam, COG, and KEGG. Five of the six Pfam protein families known to be responsible for RDX degradation in environmental samples were identified in the ovine rumen. However, increased substrate availability did not appear to enhance the proliferation of RDX-degrading bacteria and alter the microbial composition of the ovine rumen. This implies that the RDX-degrading capacity of the ovine rumen microbiome is likely regulated at the transcription level. Our results provide metagenomic insights into the RDX-degrading potential of the ovine rumen, and they will facilitate the development of novel and economic bioremediation strategies.

  20. Treatment of hydrocarbon-rich wastewater using oil degrading bacteria and phototrophic microorganisms in rotating biological contactor: Effect of N:P ratio

    International Nuclear Information System (INIS)

    Treatment of hydrocarbon-rich industrial wastewater in bioreactors using heterotrophic microorganisms is often associated with various operational problems. In this study, a consortium of phototrophic microorganisms and a bacterium is developed on the discs of a rotating biological contactor (RBC) for treatment of wastewater containing diesel oil. The reactor was fed with oil degrading bacterium, Burkholderia cepacia and oil tolerant phototrophic microorganisms. After biofilm formation and acclimatization to 0.6% (v/v) diesel, continuous-mode operation was initiated at 21 h hydraulic retention time (HRT). Residual diesel in the effluent was 0.003%. Advantages of this system include good total petroleum hydrocarbon (TPH) removal, no soluble carbon source requirement and good settleability of biosolids. Biofilm observations revealed the predominance of B. cepacia and cyanobacteria (Phormidium, Oscillatoria and Chroococcus). The N:P ratio affected the relative dominance of the phototrophic microorganisms and bacterial culture. This ratio was a critical factor in determining the performance efficiency of the reactor. At 21 h HRT and organic loading of 27.33 g TPH/m2 d, the N:P ratio 28.5:1 and 38:1 both yielded high and almost comparable TPH and COD removal efficiencies. This study presents a feasible technology for the treatment of hydrocarbon-rich wastewater from petrochemical industries and petroleum refineries

  1. H2O2-assisted photocatalysis on flower-like rutile TiO2 nanostructures: Rapid dye degradation and inactivation of bacteria

    Science.gov (United States)

    Kőrösi, László; Prato, Mirko; Scarpellini, Alice; Kovács, János; Dömötör, Dóra; Kovács, Tamás; Papp, Szilvia

    2016-03-01

    Hierarchically assembled flower-like rutile TiO2 (FLH-R-TiO2) nanostructures were successfully synthesized from TiCl4 at room temperature without the use of surfactants or templates. An initial sol-gel synthesis at room temperature allowed long-term hydrolysis and condensation of the precursors. The resulting FLH-R-TiO2 possessed relatively high crystallinity (85 wt%) and consisted of rod-shaped subunits assembling into cauliflower-like nanostructures. Hydrothermal evolution of FLH-R-TiO2 at different temperatures (150, 200 and 250 °C) was followed by means of X-ray diffraction, transmission and scanning electron microscopy. These FLH-R-TiO2 nanostructures were tested as photocatalysts under simulated daylight (full-spectrum lighting) in the degradation of methyl orange and in the inactivation of a multiresistant bacterium, Klebsiella pneumoniae. The effects of hydrothermal treatment on the structure, photocatalytic behavior and antibacterial activity of FLH-R-TiO2 are discussed.

  2. Steam explosion studies review

    Energy Technology Data Exchange (ETDEWEB)

    Hwang, Moon Kyu; Kim, Hee Dong

    1999-03-01

    When a cold liquid is brought into contact with a molten material with a temperature significantly higher than the liquid boiling point, an explosive interaction due to sudden fragmentation of the melt and rapid evaporation of the liquid may take place. This phenomenon is referred to as a steam explosion or vapor explosion. Depending upon the amount of the melt and the liquid involved, the mechanical energy released during a vapor explosion can be large enough to cause serious destruction. In hypothetical severe accidents which involve fuel melt down, subsequent interactions between the molten fuel and coolant may cause steam explosion. This process has been studied by many investigators in an effort to assess the likelihood of containment failure which leads to large scale release of radioactive materials to the environment. In an effort to understand the phenomenology of steam explosion, extensive studies has been performed so far. The report presents both experimental and analytical studies on steam explosion. As for the experimental studies, both small scale tests which involve usually less than 20 g of high temperature melt and medium/large scale tests which more than 1 kg of melt is used are reviewed. For the modelling part of steam explosions, mechanistic modelling as well as thermodynamic modelling is reviewed. (author)

  3. Steam explosion studies review

    International Nuclear Information System (INIS)

    When a cold liquid is brought into contact with a molten material with a temperature significantly higher than the liquid boiling point, an explosive interaction due to sudden fragmentation of the melt and rapid evaporation of the liquid may take place. This phenomenon is referred to as a steam explosion or vapor explosion. Depending upon the amount of the melt and the liquid involved, the mechanical energy released during a vapor explosion can be large enough to cause serious destruction. In hypothetical severe accidents which involve fuel melt down, subsequent interactions between the molten fuel and coolant may cause steam explosion. This process has been studied by many investigators in an effort to assess the likelihood of containment failure which leads to large scale release of radioactive materials to the environment. In an effort to understand the phenomenology of steam explosion, extensive studies has been performed so far. The report presents both experimental and analytical studies on steam explosion. As for the experimental studies, both small scale tests which involve usually less than 20 g of high temperature melt and medium/large scale tests which more than 1 kg of melt is used are reviewed. For the modelling part of steam explosions, mechanistic modelling as well as thermodynamic modelling is reviewed. (author)

  4. Explosions and static electricity

    DEFF Research Database (Denmark)

    Jonassen, Niels M

    1995-01-01

    The paper deals with the problem of electrostatic discharges as causes of ignition of vapor/gas and dust/gas mixtures. A series of examples of static-caused explosions will be discussed. The concepts of explosion limits, the incendiveness of various discharge types and safe voltages are explained...

  5. Biodegradation of the nitramine explosive CL-20.

    Science.gov (United States)

    Trott, Sandra; Nishino, Shirley F; Hawari, Jalal; Spain, Jim C

    2003-03-01

    The cyclic nitramine explosive CL-20 (2,4,6,8,10,12-hexanitro-2,4,6,8,10,12-hexaazaisowurtzitane) was examined in soil microcosms to determine whether it is biodegradable. CL-20 was incubated with a variety of soils. The explosive disappeared in all microcosms except the controls in which microbial activity had been inhibited. CL-20 was degraded most rapidly in garden soil. After 2 days of incubation, about 80% of the initial CL-20 had disappeared. A CL-20-degrading bacterial strain, Agrobacterium sp. strain JS71, was isolated from enrichment cultures containing garden soil as an inoculum, succinate as a carbon source, and CL-20 as a nitrogen source. Growth experiments revealed that strain JS71 used 3 mol of nitrogen per mol of CL-20. PMID:12620886

  6. Research topics in explosives - a look at explosives behaviors

    International Nuclear Information System (INIS)

    The behaviors of explosives under many conditions - e.g., sensitivity to inadvertent reactions, explosion, detonation - are controlled by the chemical and physical properties of the explosive materials. Several properties are considered for a range of improvised and conventional explosives. Here I compare these properties across a wide range of explosives to develop an understanding of explosive behaviors. For improvised explosives, which are generally heterogeneous mixtures of ingredients, a range of studies is identified as needed to more fully understand their behavior and properties. For conventional explosives, which are generally comprised of crystalline explosive molecules held together with a binder, I identify key material properties that determine overall sensitivity, including the extremely safe behavior of Insensitive High Explosives, and discuss an approach to predicting the sensitivity or insensitivity of an explosive.

  7. Construction of Straw Degradation Bacteria Group and Conditions Optimization of Their Highly Active Enzyme%高活性秸秆降解菌群的构建及产酶条件优化

    Institute of Scientific and Technical Information of China (English)

    昌艳萍; 耿超; 李春蕾; 武瑞兰; 薛柳青; 李红权

    2013-01-01

    The exploitation and use of cellulose should be placed before everything in this society with resource scarcity. Straw contains a lot of cellulose and lignin. It gradually becomes the focus of the renewable resources development from an agricultural waste. In order to make full use of straw resources, a mixture of cow muck, sheep droppings and soil which contains decayed leaves for material was used to set a flora with high cellulose degradation ability by limit culture method. Besides, the ability of this group of high efficiency degradation bacterium was decised by determining its activity of CMCase and filter paper activity. Then each strains of bacteria in this group was separated. What's more, physiology and biochemistry of each bacteria were analysed. The best enzyme production conditions the flora is optimized through orthogonal test. A flora with CMCase activity living up to 80 U/mL and filter paper activity is as high as 152 U/mL was achieved. The best enzyme production conditions which is using the PCS culture medium with filter paper cellulose culture medium for carbon sources, pH 5. 0,35 *C for stationary culture was achieved. It will become a new direction to screen high stable yield bacteria group for straw degradation.%纤维素的开发与利用在当今资源紧缺的社会下是当务之急,秸秆含有大量的纤维素,木质素.它从一个农业废弃物逐渐变为了再生资源开发的焦点.为了将秸秆资源充分利用起来,我们以牛粪,羊粪及含腐烂树叶土壤的混合物为材料,利用限制性培养技术,对其中能够降解纤维素的微生物进行驯化培养,并得到一组高效降解纤维素的菌群.利用CMC糖化力法和滤纸酶法测定该菌群的纤维素降解能力.对菌群进行菌种的分离,并进行生理生化试验分析各个菌株的特性.通过正交试验对该菌群的最佳产酶条件进行优化.得到的菌群CMCase酶活的高达80 U/mL,滤纸酶活高达152 U/mL.得到的最佳

  8. Study on Kinetic Parameters of Degradating Phenol by Photosynthetic Bacteria%光合细菌降解苯酚的动力学参数研究

    Institute of Scientific and Technical Information of China (English)

    刘宏芳

    2011-01-01

    苯酚是炼焦(油)、塑料、化工等行业生产过程中的主要污染物。随着经济的快速发展,各类含酚废水已经严重威胁着人类的生存环境。利用微生物处理含酚废水是一种经济有效且无二次污染的方法。本文主要研究了光合细菌-沼泽红假单胞菌降解含酚废水的动力学参数。实验结果表明,沼泽红假单胞菌对含酚废水具有很好的降解性能,正常状态下,该菌最大比生长速率μmax为8.00 mg/g.h,半速率常数Ks为247.92 mg/L,产率系数Y为5.88 mg/mg,内源呼吸系数Kd为0.29 d-1。%Phenol is the significant raw material or midst substance of coking plant,oil refining,plastic and medicine composing etc.More and more waste water containing phenol without treatment is threatening the environment heavily with the rapid development of economy.The method of microorganism biodegradation is economic and effective to treat with phenol waste water without second pollution.The kinetic parameters of the degradation of the phenol were studied with Rhodopseudomonas palustri.The experimental results show that Rhodopseudomonas palustris had excellent biodegradability for phenol wastewater.Under normal conditions,μmax is 8.00 mg/g·h,Ks is 247.92 mg/L,Y is 5.88 mg/mg and Kd is 0.29 d-1.

  9. The improvement of N-ammonia degradation of photosynthetic bacteria by protoplast fusion%采用原生质体融合技术选育提高氨氮降解效能的光合细菌

    Institute of Scientific and Technical Information of China (English)

    纪敦敦; 邱宏端; 谢航

    2011-01-01

    将高效降解氨氮的假丝酵母菌Candida sp.与高效降解亚硝酸盐氮的耐盐红螺菌Rhodaspeudomonas capsulate进行原生质体融合,探讨原生质体制备及融合的条件,并对融合子进行了筛选.结果表明,原生质体制备的优化条件如下:耐盐红螺菌,溶菌酶量为1.5 mg/mL,EDTA浓度为0.1 g/L,作用时间为45min;假丝酵母菌,蜗牛酶量为0.5 mg/mL,巯基乙醇的质量分数为0.1%,EDTA浓度为1g/L,作用时间为30 min.两种原生质体在聚乙二醇(PEG- 6000)和Ca2+的诱导下发生融合,在添加制霉菌素和链霉素的选择培养基上进行初筛,以生长稳定性及对氨氮、亚硝酸盐氮的降解效能等为指标进行复筛,获得了具有较好降解效能的融合子R1菌株.该菌株对亚硝酸盐氮的降解效能与耐盐红螺菌相同,达到90%以上;对氨氮的降解效能为63%,较耐盐红螺菌提高54%.%A protoplast fusion was conducted between two efficient photosynthetic bacteria, N-ammonia degrading Candida sp. And N-nitrite degrading Rhodospeudomonas capsulate. The conditions of the protoplast formation and fusion were optimized, and the best fusant was selected. The better protoplast formation for Rhodospeudomonas cap-sulata was found under the conditions of; lysozyme at 1.5 mg/mL, EDTA 0.1g/L and 45 min reaction time; for Candida sp. The better conditions of snail enzyme at 0.5 mg/mL, mercaptoethanol 0.1% ,EDTA 1 g/L and 30 min reaction time. The fusion was induced by PEG 6000 and Ca2+. Fusants were screened out by selective media containing added nystatin and streptomycin. The fusant R1 with better efficient degradation was selected by growth stability and degradation. The fusant Rl showed N -nitrite degradation at a rate of more than 90% , as good as for Rhodospeudomonas capsulata, but had N-ammonia degradation of only 63% , increased by 54%.

  10. Isolation and characterization of a crude oil degrading bacteria from formation water:comparative genomic analysis of environmental Ochrobactrum intermedium isolate versus clinical strains

    Institute of Scientific and Technical Information of China (English)

    Lu-jun CHAI; Du-jie HOU; Yue-hui SHE; Xia-wei JIANG; Fan ZHANG; Bei-wen ZHENG; Fu-chang SHU; Zheng-liang WANG; Qing-feng CUI; Han-ping DONG; Zhong-zhi ZHANG

    2015-01-01

    In this study, we isolated an environmental clone of Ochrobactrum intermedium, strain 2745-2, from the formation water of Changqing oilfield in Shanxi, China, which can degrade crude oil. Strain 2745-2 is aerobic and rod-shaped with optimum growth at 42 °C and pH 5.5. We sequenced the genome and found a single chromosome of 4 800 175 bp, with a G+C content of 57.63%. Sixty RNAs and 4737 protein-coding genes were identified:many of the genes are responsible for the degradation, emulsification, and metabolizing of crude oil. A comparative genomic analysis with related clinical strains (M86, 229E, and LMG3301T) showed that genes involved in virulence, disease, defense, phages, prophages, transposable elements, plasmids, and antibiotic resistance are also present in strain 2745-2.%题目:一株分离自地层水的石油降解菌的特性研究:Ochrobactrum intermedium环境分离菌株与临床分离菌株的比较基因组分析  目的:对一株地层水分离的石油降解菌 Ochrobactrum intermedium 2745-2进行生理生化特性的研究、全基因组测序以及比较基因组研究。  创新点:首次对一株分离自地层水的石油降解菌 O. inter-medium 2745-2进行了生理生化特性研究以及基因组测序,从基因组角度解释菌株2745-2对石油的降解能力。通过菌株2745-2与同种其他临床分离菌株的比较基因组学分析,表明2745-2仍具有多种与致病性相关的基因。  方法:通过微生物富集培养的方法从油井的地层水中分离石油降解微生物,通过聚合酶链反应(PCR)扩增16S核糖体RNA(rRNA)序列进行比较和分析确定菌株的分类地位属于 O. intermedium (图1)。采用Illumina HiSeq2000对菌株2745-2进行高通量测序,采用 Velvet 1.2.07和 RAST server分别进行数据组装和注释(表1)。PHAST寻找基因组中的噬菌体相关序列(图4和表2)。通过BLAST+和BRIG对环境分离菌株(2745-2

  11. Liquid explosives detection

    Science.gov (United States)

    Burnett, Lowell J.

    1994-03-01

    A Liquid Explosives Screening System capable of scanning unopened bottles for liquid explosives has been developed. The system can be operated to detect specific explosives directly, or to verify the labeled or bar-coded contents of the container. In this system nuclear magnetic resonance (NMR) is used to interrogate the liquid. NMR produces an extremely rich data set and many parameters of the NMR response can be determined simultaneously. As a result, multiple NMR signatures may be defined for any given set of liquids, and the signature complexity then selected according to the level of threat.

  12. Isolation and Degrading Properties of PAHs-Degrading Bacteria from the Contaminated Soil of a Coking Plant%焦化厂污染土壤中多环芳烃降解菌的分离及降解特性

    Institute of Scientific and Technical Information of China (English)

    卢晓霞; 吴淑可; 侯珍; 李秀利; 陈超琪; 吴蔚

    2011-01-01

    Aimed at bioremediation of the soil contaminated by a coking plant, polycyclic aromatic hydrocarbons (PAHs)-degrading bacteria were isolated from the soil and their degrading properties were studied. Streak-plating method was applied to isolate the PAHs-degrading bacteria using fluorine (3 rings), fluoranthene (4 rings) and benzo[b]-fluoranthene {5 rings) as the sole carbon source (1 mg/L), respectively. Self-made respiration flasks were employed to study the mineralization of l4C-labelled phenanthrene (5 μL/100 mL 40-60 mCi/mmol) by the obtained bacteria. Using coal-tar oil as the carbon source (1 μL/mL), batch experiments were performed to investigate the degradation of 19 PAHs by the bacteria. The obtained four strains of bacteria were identified as Bordetella sp. L1, Ochrobactrum sp. L1, Microbacterium sp. L1 and Rhodococcus sp. L1, respectively. After three weeks of mineralization experiments, the l4C-labelled phenanthrene was almost converted to I4CO, by Microbacterium sp. L1, about 60% converted by Rhodococcus sp. L1, while Bordetella sp. L1 and Ochrobactrum sp. L1 were not able to mineralize l4C-labelled phenanthrene. After five weeks of batch experiments, degradation of PAHs was most significant in the system enriched with Bordetella sp. L1, followed by Ochrobactrum sp. L1 and Microbacterium sp. L1. In the system of Rhodococcus sp. L1, the concentrations of some PAHs increased, probably due to the production of biosurfactant. It was suggested that the obtained four strains of bacteria have application potential in the bioremediation of PAHs-contaminated soil. Fig 3, Table l.Ref27%分别以芴(3环)、荧蒽(4环)和苯并[b]荧蒽(5环)为唯一碳源(1 mg/L),采用平板划线法对某焦化厂污染土壤中的多环芳烃降解菌进行分离通过自制的呼吸器,研究所得多环芳烃降解菌对14C-菲(5 μL/100 mL 40~60 mCi/mmol)的矿化情况;通过序批试验,以煤焦油为碳源(1μL/mL),研究这些菌对19种多环芳烃的降解

  13. Explosive Components Facility

    Data.gov (United States)

    Federal Laboratory Consortium — The 98,000 square foot Explosive Components Facility (ECF) is a state-of-the-art facility that provides a full-range of chemical, material, and performance analysis...

  14. Intermittent Explosive Disorder

    Directory of Open Access Journals (Sweden)

    Lut Tamam

    2011-09-01

    Full Text Available Intermittent explosive disorder is an impulse control disorder characterized by the occurrence of discrete episodes of failure to resist aggressive impulses that result in violent assault or destruction of property. Though the prevalence intermittent explosive disorder has been reported to be relatively rare in frontier studies on the field, it is now common opinion that intermittent explosive disorder is far more common than previously thought especially in clinical psychiatry settings. Etiological studies displayed the role of both psychosocial factors like childhood traumas and biological factors like dysfunctional neurotransmitter systems and genetics. In differential diagnosis of the disorder, disorders involving agression as a symptom such as alcohol and drug intoxication, antisocial and borderline personality disorders, personality changes due to general medical conditions and behavioral disorder should be considered. A combination of pharmacological and psychotherapeutic approaches are suggested in the treatment of the disorder. This article briefly reviews the historical background, diagnostic criteria, epidemiology, etiology and treatment of intermittent explosive disorder.

  15. Shock waves & explosions

    CERN Document Server

    Sachdev, PL

    2004-01-01

    Understanding the causes and effects of explosions is important to experts in a broad range of disciplines, including the military, industrial and environmental research, aeronautic engineering, and applied mathematics. Offering an introductory review of historic research, Shock Waves and Explosions brings analytic and computational methods to a wide audience in a clear and thorough way. Beginning with an overview of the research on combustion and gas dynamics in the 1970s and 1980s, the author brings you up to date by covering modeling techniques and asymptotic and perturbative methods and ending with a chapter on computational methods.Most of the book deals with the mathematical analysis of explosions, but computational results are also included wherever they are available. Historical perspectives are provided on the advent of nonlinear science, as well as on the mathematical study of the blast wave phenomenon, both when visualized as a point explosion and when simulated as the expansion of a high-pressure ...

  16. Modeling nuclear explosion

    Science.gov (United States)

    Redd, Jeremy; Panin, Alexander

    2012-10-01

    As a result of the Nuclear Test Ban Treaty, no nuclear explosion tests have been performed by the US since 1992. This appreciably limits valuable experimental data needed for improvement of existing weapons and development of new ones, as well as for use of nuclear devices in non-military applications (such as making underground oil reservoirs or compressed air energy storages). This in turn increases the value of numerical modeling of nuclear explosions and of their effects on the environment. We develop numerical codes simulating fission chain reactions in a supercritical U and Pu core and the dynamics of the subsequent expansion of generated hot plasma in order to better understand the impact of such explosions on their surroundings. The results of our simulations (of both above ground and underground explosions) of various energy yields are presented.

  17. Parametric Explosion Spectral Model

    Energy Technology Data Exchange (ETDEWEB)

    Ford, S R; Walter, W R

    2012-01-19

    Small underground nuclear explosions need to be confidently detected, identified, and characterized in regions of the world where they have never before occurred. We develop a parametric model of the nuclear explosion seismic source spectrum derived from regional phases that is compatible with earthquake-based geometrical spreading and attenuation. Earthquake spectra are fit with a generalized version of the Brune spectrum, which is a three-parameter model that describes the long-period level, corner-frequency, and spectral slope at high-frequencies. Explosion spectra can be fit with similar spectral models whose parameters are then correlated with near-source geology and containment conditions. We observe a correlation of high gas-porosity (low-strength) with increased spectral slope. The relationship between the parametric equations and the geologic and containment conditions will assist in our physical understanding of the nuclear explosion source.

  18. Aging of civil explosives (Poster)

    NARCIS (Netherlands)

    Krabbendam-La Haye, E.L.M.; Klerk, W.P.C. de; Hoen, C. 't; Krämer, R.E.

    2014-01-01

    For the Dutch MoD and police, TNO composed sets with different kinds of civil explosives to train their detection dogs. The manufacturer of these explosives guarantees several years of stability of these explosives. These sets of explosives are used under different conditions, like temperature and h

  19. Modelling of gas explosions

    OpenAIRE

    Vågsæther, Knut

    2010-01-01

    The content of this thesis is a study of gas explosions in complex geometries and presentation and validation of a method for simulating flame acceleration and deflagration to detonation transition. The thesis includes a description of the mechanisms of flame acceleration and DDT that need to be modeled when simulating all stages of gas explosions. These mechanisms are flame acceleration due to instabilities that occur in fluid flow and reactive systems, shock propagation, deflagration to det...

  20. Explosive Welding with Nitroguanidine.

    Science.gov (United States)

    Sadwin, L D

    1964-03-13

    By using the explosive nitroguanidine, continuous welds can be made between similar and dissimilar metals. Since low detonation pressures are attainable, pressure transfer media are not required between the explosive and the metal surface. The need for either a space or an angle between the metals is eliminated, and very low atmospheric pressures are not required. Successful welds have been made between tantalum and 4140 steel, 3003H14 aluminum and 4140 steel, and 304 stainless steel and 3003H14 aluminum.

  1. Chemical Explosion Database

    Science.gov (United States)

    Johansson, Peder; Brachet, Nicolas

    2010-05-01

    A database containing information on chemical explosions, recorded and located by the International Data Center (IDC) of the CTBTO, should be established in the IDC prior to entry into force of the CTBT. Nearly all of the large chemical explosions occur in connection with mining activity. As a first step towards the establishment of this database, a survey of presumed mining areas where sufficiently large explosions are conducted has been done. This is dominated by the large coal mining areas like the Powder River (U.S.), Kuznetsk (Russia), Bowen (Australia) and Ekibastuz (Kazakhstan) basins. There are also several other smaller mining areas, in e.g. Scandinavia, Poland, Kazakhstan and Australia, with large enough explosions for detection. Events in the Reviewed Event Bulletin (REB) of the IDC that are located in or close to these mining areas, and which therefore are candidates for inclusion in the database, have been investigated. Comparison with a database of infrasound events has been done as many mining blasts generate strong infrasound signals and therefore also are included in the infrasound database. Currently there are 66 such REB events in 18 mining areas in the infrasound database. On a yearly basis several hundreds of events in mining areas have been recorded and included in the REB. Establishment of the database of chemical explosions requires confirmation and ground truth information from the States Parties regarding these events. For an explosion reported in the REB, the appropriate authority in whose country the explosion occurred is encouraged, on a voluntary basis, to seek out information on the explosion and communicate this information to the IDC.

  2. 低温环境中 T-2毒素降解菌的分离鉴定及特性研究%Isolation and Identification of T-2 Toxin Degradable Bacteria and Its Characteristic in Low Temperature Environment

    Institute of Scientific and Technical Information of China (English)

    吕鹏莉; 陈海燕; 王雅玲; 孙力军; 张春辉; 施琦; 徐德峰; 叶日英

    2015-01-01

    T-2 toxin degradable bacteria( TTDB)in low-temperature environment was Isolated and screened and found out its biochemical characteristics,and probed deeply into its microbiological and biochemical features of simi-lar and dissimilar points,to provide reference for biochemical judgment during the inspection with TTDB. Aiming at exposure of low concentration T-2 toxin standard sample to - 20 ℃ low temperature environment T-2 standard toxin of low concentration,LC-MS / MS was adopted to quantitatively analyze the residual amount of T-2 toxin,using NA and PDA media,and isolated five degradable bacteria,they were identified as Bacillus vallismortis,Pseudomonas geniculata,Staphylococcus nepalensis,Bacillus cereus,and Enterobacter cloacae according to 16S rDNA and their bio-chemical characteristics,all can degrate low concentration T-2 toxin in different degrees at - 20 ℃ ,among them B. cereus had the strongest degradation with the rate as high as 91% . They have many similarities in physicochemical property,all of them cannot utilize D-tagatose(dTAG),exhibited negative to ELLMAN. B. vallismortis Bp1234-7, P. geniculata Bp24-4,S. nepalensis Bp124-5 and E. cloacae Bp123-7 decompose D-glucose,while B. cereus Bp123-7 does not.%离筛选低温环境中 T-2毒素的降解菌并探明其生化特性,探究 T-2毒素降解微生物生化特性异同点,为 T-2毒素降解微生物的检验提供生化判断参考。针对暴露于-20℃低温环境中的低浓度 T-2毒素标准品,采用 LC-MS/ MS 定量分析 T-2毒素残留量,利用营养琼脂培养基(NA)和马铃薯葡萄糖琼脂培养基(PDA)共分离出5株降解菌,16S rDNA 结合生化鉴定结果为死谷芽胞杆菌(Bacillus vallismortis)、蜡状芽胞杆菌(Bacil-lus cereus)、阴沟肠杆菌( Enterobacter cloacae)、弯曲假单胞菌( Pseudomonas geniculata)和尼泊尔葡萄球菌(Staphylococcus nepalensis)。这些分离株在-20℃条件下对低浓度 T-2毒素均

  3. Underground explosion barriers - a review

    Energy Technology Data Exchange (ETDEWEB)

    Jensen, B.; O`Beirne, T. [ACIRL Ltd., Booval, Qld. (Australia)

    1997-12-31

    The paper focuses on explosibility conditions in underground coal mines, the behaviour of explosions from initiating gas ignition to violent dust explosions and the effectiveness and limits of operation of current designs of passive explosion barriers in suppressing the flame front. The paper also discusses performance evaluations made in full scale explosion galleries and the use of alternatives to passive barriers, including the installation of active barriers under some circumstances.

  4. 耐盐石油烃降解菌的筛选鉴定及其特性研究%Isolation,Identification and Characterization of Halotolerant Petroleum-degrading Bacteria

    Institute of Scientific and Technical Information of China (English)

    吴涛; 谢文军; 依艳丽; 李小彬; 王君; 胡相明

    2012-01-01

    To obtain efficient halotolerant petroleum-degrading bacteria,39 bacteria strains were isolated from 30 petroleum contaminated saline soil samples in Yellow River Delta,an important base of petroleum production in China.One bacterium(strain BM38) was found to efficiently degrade crude oil in highly saline environments based on a series of liquid and soil incubation experiments.According to its morphology,physiochemical characteristics and 16S rDNA sequence analysis,this strain was identified as Pseudomonas putida.Moreover,a series of liquid incubation experiments were conducted to investigate its characteristics such as halotolerance,biosurfactants production and degrading efficiency for various hydrocarbons.The salt resistance test demonstrated that strain BM38 grew well at NaCl concentrations ranging from 0.5% to 6.0%.Petroleum degradation experiments showed that strain BM38 could degrade 73.5% crude oil after 7 days in a liquid culture medium containing 1.0% NaCl and remove more than 40% of total petroleum hydrocarbons after 40 days in the soil with 0.22% and 0.61% of salinity,these results proved that the strain was effective in removing petroleum hydrocarbons.Strain BM38 could produce a bioemulsifier in a liquid culture medium.The NaCl concentration had the significant effect on the EI24 of fermentation broth,which decreased sharply if the NaCl concentration was greater than 1.0%.However,the EI24 of BM38 was still quite high in the presence of 2.0% of NaCl,and the value was 61.0%.Furthermore,this strain was also able to grow in mineral liquid media amended with hexadecane,toluene,phenanthrene,isooctane and cyclohexane as the sole carbon sources.Among these hydracarbons,strain BM38 showed relatively high ability in degrading n-alkanes and aromatic hydracarbons.The results indicated that strain BM38 had potential for application in bioremediation of petroleum-contaminated saline soil.%为得到高效耐盐石油烃降解菌,从黄河三角洲石油污染

  5. The growth and petroleum degradation characteristics of bacteria in coastal beach%一株沿海滩涂细菌的降油及生长特性研究

    Institute of Scientific and Technical Information of China (English)

    王斌; 周雅飞; 张兴; 郑峰伟; 高钰婷; 何洁; 周一兵

    2012-01-01

    The bacteria that have capability to degrade crude oil were isolated from the coastal beach polluted by crude oil with the basal medium crude oil as only carbon source. The original degradation rate of diesel oil by the i-solated strains was determined. In addition, the degradation rate of diesel oil by the isolated strain was determined with the basal medium diesel oil including different concentration of glucose (0, 1,2,4,8, 16 g/L) , the different concentrations of yeast extract, peptone, carbamide, (NH4)2SO4( according to the content of nitrogen; 0. 5, 1,2 g/L) and NaH2P04(0, 4, 8 , 16 g/L) . The isolated strain was identified and growth characteristics were studied. The results showed: 5 strains bacteria grew on the basal medium crude oil as only carbon source. One of these stains had a maximum original degradation rate (19.0% ) and was numbered as Y-3. The degradation rate of Y-3 increased and reached to 79. 9% in the diesel oil medium supplemented with glucose (4 g/L). The degradation rate was increased in Y-3 in addition of yeast extract and peptone also, but not notable in added urea, (NH4)2S04 and NaH2PO4. The Y-3 was identified as Pseudomonas putida according to the result of the morphology, physiological characteristics and 16S rDNA sequence analysis. The Y-3 had fitting growth at temperature of 30 ℃ , pH 8, and NaCl concentration of 0-30 g/L.%采用以原油为唯一碳源的基础培养基,从原油污染的沿海滩涂土壤中分离筛选具有降油性能的细菌;采用柴油培养基测定分离菌株对柴油的原始降解率;通过在柴油培养基中添加不同浓度的葡萄糖(0、1、2、4、8、16 g/L),及不同浓度的酵母膏、蛋白胨、尿素、硫酸铵(以氮计,浓度为0.5、1、2 g/L)和磷酸二氢钠(0、4、8、12 g/L)后,测定分离菌株的降油性能;鉴定分离菌株并研究其生长特性.结果表明:共分离到5株能以原油为唯一碳源生长的细菌,其中1株原始降油率最高(19.0

  6. 海洋石油降解菌的筛选及复合菌系的构建%Screening of Marine Crude Oil-degrading Bacteria and Construction of Microbial Consortium

    Institute of Scientific and Technical Information of China (English)

    吴秉奇; 刘淑杰; 陈福明; 周楚莹

    2016-01-01

    For the purpose of controlling marine oil contamination by biological treatment technology,using crude oil acting as sole carbon source and enrichment and spread plate method,high-performance oil-grading bacteria were isolated from five sampling points in the sea near Shenzhen,and bacterial consortium was constructed by mixing and orthogonal experiments. Physiological and biochemical experiments and 16S rRNA gene sequence analysis were used to identify the strains. Single-factor experiment was employed to optimize the conditions of oil biodegradation by the consortium,and gas chromatography and mass spectrum(GC-MS)were utilized to analyze its biodegradation characteristics. The results showed that 22 strains of high-performance oil-degrading bacteria were isolated,and the degrading rates varied from 34.5% to 52.2%. The degrading rate by microbial consortium SQ1 composed of S1-30,S1-38,and S2-13 strains reached 68.3%. These three strains were identified as Corynebacterium sp.,Dietzia sp. and Labrenzia sp. SQ1 was able to degrade the oil by 73.5% in 11 days under optimized conditions,referring to 30℃,pH7.6,oil concentration 20 g/L. The GC-MS results showed that consortium SQ1 was able to degrade the total alkane by 91.7%,and the more refractory C21-C35 by nearly 100%. The study shows that consortium SQ1 has great application potential of bioremediation for marine oil contamination.%为采用生物法治理海洋石油污染,以原油为唯一碳源,从深圳海域5个采样点取样,通过富集、涂布平板分离高效石油降解菌,并以复配、正交等方式构建石油降解复合菌系;通过生理生化实验和16S rRNA 基因序列分析对菌株进行鉴定;采用单因素实验对复合菌系降解石油的条件进行优化,并使用气相色谱-质谱法(GC-MS)研究其对石油的降解特性。结果显示,共分离得到22株高效石油降解菌,对石油的降解率为34.5%-52.2%;由 S1-30、S1-38和 S2-13

  7. Methanotrophic bacteria.

    OpenAIRE

    Hanson, R S; Hanson, T. E.

    1996-01-01

    Methane-utilizing bacteria (methanotrophs) are a diverse group of gram-negative bacteria that are related to other members of the Proteobacteria. These bacteria are classified into three groups based on the pathways used for assimilation of formaldehyde, the major source of cell carbon, and other physiological and morphological features. The type I and type X methanotrophs are found within the gamma subdivision of the Proteobacteria and employ the ribulose monophosphate pathway for formaldehy...

  8. The flexibility of UV-inducible mutation in Deinococcus ficus as evidenced by the existence of the imuB-dnaE2 gene cassette and generation of superior feather degrading bacteria.

    Science.gov (United States)

    Zeng, You-Hong; Shen, Fo-Ting; Tan, Chen-Chung; Huang, Chieh-Chen; Young, Chiu-Chung

    2011-12-20

    The lexA-imuB-dnaE2 gene cassette contributing to the TLS (translesion synthesis) polymerase activity and can easily cause mutation after DNA damage in many bacteria. But it was previously thought that TLS polymerase activity was unlikely to exist in the radio-resistant genus Deinococcus. In our preliminary studies, the lexA-imuB-dnaE2 gene cassette was found in a newly isolated feather-degrading Deinococcus ficus. Here we have attempted to determine the imuB gene sequence from another Deinococcus species namely D. grandis, by using the newly designed primers. The destroying of either imuB or dnaE2 gene in D. ficus leads to the increase in UV sensitivity and decrease in UV-induced mutations, which demonstrated the existence of TLS polymerase activity in D. ficus. In the presence of lexA-imuB-dnaE2, it is possible to obtain mutants with various keratinolytic activities after UV exposure. The keratinolytic activity of mutant strain CC-ZG207 increased by approximately twofold during growth in liquid feather medium. In contrast, the mutant strain CC-ZG227 showed only half of the keratinolytic activity compared with the wild type strain. By utilizing SDS-PAGE and zymogram profile analysis, the change in the protease activity was observed. We have proposed that the superior mutants of D. ficus can be created under UV stress, which is mediated by the lexA-imuB-dnaE2 gene cassette.

  9. Biodegradation of the High Explosive Hexanitrohexaazaiso-wurtzitane (CL-20)

    OpenAIRE

    Steve Nicolich; Mohammed Sidhoum; Wendy Balas; Pelin Karakaya; Agamemnon Koutsospyros; Christos Christodoulatos

    2009-01-01

    The aerobic biodegradability of the high explosive CL-20 by activated sludge and the white rot fungus Phanerochaete chrysosporium has been investigated. Although activated sludge is not effective in degrading CL-20 directly, it can mineralize the alkaline hydrolysis products. Phanerochaete chrysosporium degrades CL-20 in the presence of supplementary carbon and nitrogen sources. Biodegradation studies were conducted using various nutrient media under diverse conditions. Variables included the...

  10. Use of the pre-pro part of Staphylococcus hyicus lipase as a carrier for secretion of Escherichia coli outer membrane protein A (OmpA) prevents proteolytic degradation of OmpA by cell-associated protease(s) in two different gram-positive bacteria.

    OpenAIRE

    Meens, J.; Herbort, M. (Mirco); Klein, M.; Freudl, R

    1997-01-01

    Heterologous protein secretion was studied in the gram-positive bacteria Bacillus subtilis and Staphylococcus carnosus by using the Escherichia coli outer membrane protein OmpA as a model protein. The OmpA protein was found to be translocated across the plasma membrane of both microorganisms. However, the majority of the translocated OmpA was similarly degraded in B. subtilis and S. carnosus despite the fact that the latter organism does not secrete soluble exoproteases into the culture mediu...

  11. Explosive Welding with Nitroguanidine.

    Science.gov (United States)

    Sadwin, L D

    1964-03-13

    By using the explosive nitroguanidine, continuous welds can be made between similar and dissimilar metals. Since low detonation pressures are attainable, pressure transfer media are not required between the explosive and the metal surface. The need for either a space or an angle between the metals is eliminated, and very low atmospheric pressures are not required. Successful welds have been made between tantalum and 4140 steel, 3003H14 aluminum and 4140 steel, and 304 stainless steel and 3003H14 aluminum. PMID:17833901

  12. 77 FR 58410 - Commerce in Explosives; List of Explosive Materials (2012R-10T)

    Science.gov (United States)

    2012-09-20

    ... salt lattice with isomorphously substituted inorganic salts. * ANFO . Aromatic nitro-compound explosive.... Explosive mixtures containing tetranitromethane (nitroform). Explosive nitro compounds of aromatic... polyhydric alcohol explosives. Nitric acid and a nitro aromatic compound explosive. Nitric acid...

  13. 75 FR 70291 - Commerce in Explosives; List of Explosive Materials (2010R-27T)

    Science.gov (United States)

    2010-11-17

    ... salt lattice with isomorphously substituted inorganic salts. * ANFO . Aromatic nitro-compound explosive.... Explosive mixtures containing tetranitromethane (nitroform). Explosive nitro compounds of aromatic... polyhydric alcohol explosives. Nitric acid and a nitro aromatic compound explosive. Nitric acid...

  14. Portable raman explosives detection

    Energy Technology Data Exchange (ETDEWEB)

    Moore, David Steven [Los Alamos National Laboratory; Scharff, Robert J [Los Alamos National Laboratory

    2008-01-01

    Recent advances in portable Raman instruments have dramatically increased their application to emergency response and forensics, as well as homeland defense. This paper reviews the relevant attributes and disadvantages of portable Raman spectroscopy, both essentially and instrumentally, to the task of explosives detection in the field.

  15. Biodegradation of Complex Bacteria on Phenolic Derivatives in River Water

    Institute of Scientific and Technical Information of China (English)

    GUANG-HUA LU; CHAO WANG; ZHE SUN

    2009-01-01

    Objective To isolate, incubate, and identify 4-chlorophenol-degrading complex bacteria, determine the tolerance of these bacteria to phenolic derivatives and study their synergetic metabolism as well as the aboriginal microbes and co-metabolic degradation of mixed chlorophenols in river water. Methods Microbial community of complex bacteria was identified by plate culture observation techniques and Gram stain method. Bacterial growth inhibition test was used to determine the tolerance of complex bacteria to toxicants. Biodegradability of phenolic derivatives was determined by adding 4-chlorophenol-degrading bacteria in river water. Results The complex bacteria were identified as Mycopiana, Alcaligenes, Pseudvmonas, and Flavobacterium. The domesticated complex bacteria were more tolerant to phenolic derivatives than the aboriginal bacteria from Qinhuai River. The biodegradability of chlorophenols, dihydroxybenzenes and nitrophenols under various aquatic conditions was determined and compared. The complex bacteria exhibited a higher metabolic efficiency on chemicals than the aboriginal microbes, and the final removal rate of phenolic derivatives was increased at least by 55% when the complex bacteria were added into river water. The metabolic relationship between dominant mixed bacteria and river bacteria was studied. Conclusion The complex bacteria domesticated by 4-chlorophenol can grow and be metabolized to take other chlorophenols, dihydroxybenzenes and nitrophenols as the sole carbon and energy source. There is a synergetic metabolism of most compounds between the aboriginal microbes in river water and the domesticated complex bacteria. 4-chlorophenol-degrading bacteria can co-metabolize various chlorophenols in river water.

  16. Keratinolytic activity of cutaneous and oral bacteria.

    OpenAIRE

    Mikx, F H; De Jong, M H

    1987-01-01

    A test was developed to measure the keratinolytic activity of cutaneous and oral bacteria. Keratin, labeled with fluorescein isothiocyanate, was used in a phosphate buffer (pH 7.2) with 1 mM dithiothreitol. The degradation of keratin was estimated by measuring the fluorescence of the degradation products in the supernatant of the reaction mixtures in a luminescence spectrometer. Several oral and cutaneous bacteria were investigated: Bacteroides gingivalis, Bacteroides intermedius, Treponema d...

  17. Extension of service life of rigid transfer lines /SMDC/. [explosive components for aircraft escape systems

    Science.gov (United States)

    Bement, L. J.; Kayser, E. G.; Schimmel, M. L.

    1982-01-01

    The results of a life evaluation program on rigid explosive transfer lines, which are used to initiate aircraft emergency crew escape functions, are presented in order to provide quantitative information on rigid explosive transfer lines which can contribute to responsible, conservative, service life determinations. The program involved the development of a test methodology, testing of the three types of transfer lines in use in the U.S., testing of these lines following a repeat of the thermal test conducted in the original qualification, and conducting a degradation investigation. Results from the testing of more than 800 components showed that rigid explosive transfer lines were not affected by age, service, or a repeat of the thermal qualification tests on full-service lines. The explosive degradation limits were approximated and the mechanisms examined. It is concluded that the service lives of rigid explosive transfer lines should be considered for extension in order to provide cost savings and increased system reliability.

  18. Anaerobic bacteria

    Science.gov (United States)

    Brook I, Goldstein EJ. Diseases caused by non-spore forming anaerobic bacteria. In: Goldman L, Schafer AI, eds. Goldman's Cecil Medicine . 25th ed. Philadelphia, PA: Elsevier Saunders; 2015:chap 297. Stedman's Online ...

  19. Effects of Different Bacteria Agent Treatments on Cellulose Degradation and Related Enzyme Activities of Corn Cob Fermentation Process%不同菌剂处理对玉米芯发酵过程中纤维素降解及相关酶活性的影响

    Institute of Scientific and Technical Information of China (English)

    鲜开梅

    2014-01-01

    Taking corn cob as fermentation materials and enzyme microorganism, organic matter-decomposing inoculant and Gymboree as fermentation bacteria agents, we studied effects of these three bacteria agent treatments on cellulose degradation and related enzyme activities of corn cob fermentation process. The results showed that after treating with three bacteria agents, the activity of cellulose-degrading enzyme increased, degradation ratios of cellulose and hemicellulose in corn cob substrate are higher than control, and these effects of enzyme microorganism treatment is best, moreover, the activity of peroxidase increased which could effectively enhance degradation ratio of cellulose in corn cob substrate by 21.1%-50.5%than control, and this effect of Gymboree treatment is best.%以玉米芯为发酵原料,EM酵素菌、有机物料腐熟剂、金宝贝菌剂3种市售菌剂为发酵菌剂,研究了3种菌剂处理对玉米芯发酵过程中纤维素降解及相关酶活性的影响。结果表明,不同发酵菌剂处理后,纤维素降解酶的活性均增强,玉米芯基质中的纤维素、半纤维素降解率高于对照,其中EM酵素菌处理效果最佳;3种菌剂处理使木质素过氧化物酶活性增强,可有效提高玉米芯基质中的木质素降解率,其中金宝贝菌剂处理效果最佳,与对照相比降解率提高21.1%~50.5%。

  20. 利用DGGE-菌落原位杂交法分离土壤中精喹禾灵降解菌%Isolation of Quizalofop-p-ethyl-degrading Bacteria from Soil by DGGE-Colony in situ Hybridization

    Institute of Scientific and Technical Information of China (English)

    吕欣; 彭霞薇; 呼庆; 马安周; 江泽平; 魏远

    2013-01-01

    Naturally occurring bacteria isolates capable of metabolizing pesticides have received considerable attention because they offer the possibility of both environmentally friendly and in situ remediation. The effect of herbicide quizalofop-p-ethyl on bacterial community in soil was analyzed using the technique of PCR-DGGE for isolating strains biodegrading quizalofop-p-ethyl. Results indicated that the soil bacterial community structures significantly changed after adding quizalofop-p-ethyl. The bacterial diversity of soil showed an increasing-decreasing-increasing trend. The largest changes occurred in the 9th day and then became stabilized. According to the sequencing results of bands in DGGE profiles, it inferred that members of bacterial genera Pseudomonas, Massilia and Burkholderia had tolerance to quizalofop-p-ethyl, and the potential for degradation. These microbial groups could be used to isolate and screen as the indigenous microbial resources to reduce pesticide residues. Digoxigenin-labeled probes had been synthesized based on the sequencing results of bands in the DGGE profiles, and three bacterial strains capable of biodegrading quizalofop-p-ethyl were isolated from soil by colony in situ hybridization technique. The strain named LI was able to utilize quizalofop-p-ethyl as the sole source of carbon. The strain was identified as Pseudomonas sp., based on the phylogenetic analysis of 16S rRNA. The degrading ability of strain L1 in minimal medium with quizalofop-p-ethyl was investigated by HPLC. The quizalofop-p-ethyl content decreased by almost 50% after 7 days, and the biomass of strain L1 increased while the content of quizalofop-p-ethyl was decreased. This confirmed that the strain L1 had the capacity of degradation. This result provided a basis for future research on degradation mechanism and functional genes.%从自然环境中分离到的可降解农药的土著微生物,因其对环境的友好性及原位修复的可行性,受到了高度关注.

  1. Explosive Nucleosynthesis in Hypernovae

    CERN Document Server

    Nakamura, T; Iwamoto, K; Nomoto, K; Hashimoto, M; Hix, W R; Thielemann, F K; Nakamura, Takayoshi; Umeda, Hideyuki; Iwamoto, Koichi; Nomoto, Ken'ichi; Hashimoto, Masa-aki; Thielemann, Friedrich-Karl

    2000-01-01

    We examine the characteristics of nucleosynthesis in 'hypernovae', i.e., supernovae with very large explosion energies ($ \\gsim 10^{52} $ ergs). We carry out detailed nucleosynthesis calculations for these energetic explosions and compare the yields with those of ordinary core-collapse supernovae. We find that both complete and incomplete Si-burning takes place over more extended, lower density regions, so that the alpha-rich freezeout is enhanced in comparison with ordinary supernova nucleosynthesis. In addition, oxygen and carbon burning takes place in more extended, lower density regions than in ordinary supernovae. Therefore, the fuel elements O, C, Al are less abundant while a larger amount of burning products such as Si, S, and Ar are synthesized by oxygen burning. Implications for Galactic chemical evolution and the abundances in metal-poor stars are also discussed.

  2. Explosions in November

    OpenAIRE

    Steinitz, Richard

    2011-01-01

    Explosions in November tells the story of one of Europe’s leading cultural institutions, Huddersfield Contemporary Music Festival (hcmf), through the eyes of its founder and former artistic director, Professor Richard Steinitz. From its modest beginnings in 1978, when winter fog nearly sabotaged the inaugural programme, to today’s internationally renowned event, hcmf has been a pioneering champion of the best in contemporary music. Commissioning new work, reappraising existing legacies an...

  3. Explosives signatures and analysis

    Science.gov (United States)

    Fountain, Augustus Way, III; Oyler, Jonathan M.; Ostazeski, Stanley A.

    2008-04-01

    The challenge of sampling explosive materials for various high threat military and civilian operational scenarios requires the community to identify and exploit other chemical compounds within the mixtures that may be available to support stand-off detection techniques. While limited surface and vapor phase characterization of IEDs exist, they are insufficient to guide the future development and evaluation of field deployable explosives detection (proximity and standoff) capabilities. ECBC has conducted a limited investigation of three artillery ammunition types to determine what chemical vapors, if any, are available for sensing; the relative composition of the vapors which includes the more volatile compounds in munitions, i.e., plastersizers and binders; and the sensitivity needed detect these vapors at stand-off. Also in partnership with MIT-Lincoln Laboratory, we performed a background measurement campaign at the National Training Center to determine the baseline ambient amounts and variability of nitrates and nitro-ester compounds as vapors, particulates, and on surfaces; as well as other chemical compounds related to non-energetic explosive additives. Environmental persistence studies in contexts relevant to counter-IED sensing operations, such as surface residues, are still necessary.

  4. Characteristic Research on Evaporated Explosive Film

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    The evaporation source of evaporated explosive was designed and improved based on the inherent specialties of explosive. The compatibility of explosives and addition agent with evaporation vessels was analyzed. The influence of substrate temperature on explosive was analyzed, the control method of substrate temperature was suggested. The influences of evaporation rate on formation of explosive film and mixed explosive film were confirmed. Optimum evaporation rate for evaporation explosive and the better method for evaporating mixed explosive were presented. The necessary characteristics of the evaporated explosive film were obtained by the research of the differences between the evaporated explosive and other materials.

  5. Pentaerythritol tetranitrate (PETN) profiling in post-explosion residues to constitute evidence of crime-scene presence.

    Science.gov (United States)

    Brust, Hanneke; van Asten, Arian; Koeberg, Mattijs; van der Heijden, Antoine; Kuijpers, Chris-Jan; Schoenmakers, Peter

    2013-07-10

    Pentaerythritol tetranitrate (PETN) and its degradation products are analyzed to discriminate between residues originating from PETN explosions and residues obtained under other circumstances, such as natural degradation on textile, or after handling intact PETN. The degradation products observed in post-explosion samples were identified using liquid chromatography-mass spectrometry as the less-nitrated analogues of PETN: pentaerythritol trinitrate (PETriN), pentaerythritol dinitrate (PEDiN) and pentaerythritol mononitrate (PEMN). Significant levels of these degradation products were observed in post-explosion samples, whereas only very low levels were detected in a variety of intact PETN samples and naturally degraded PETN. No significant degradation was observed after 12 weeks of storage at room temperature and the influence of high relative humidity (90%) was found to be small. Natural degradation was accelerated by storage of small amounts of PETN on different types of textile, resembling the clothing of a suspect, at elevated temperature (333K). This resulted in significant levels of PETN degradation products, but the relative amounts remained much lower than in post-explosion PETN. For PETriN the peak area relative to PETN was 0.014 (SD=0.0051) and 0.39 (SD=0.19) respectively. Based on the peak areas of PETriN, PEDiN and PEMN relative to PETN, it was possible to fully distinguish the post-explosion profiles from the profiles obtained from intact PETN or after (accelerated) natural degradation. Although more data are required to accurately assess the strength of the evidence, this work illustrates that PETN profiling may yield valuable evidence when investigating a possible link between a suspect and post-explosion PETN found on a crime scene. Due to the substantial variation in the degradation pattern between explosion experiments and even between sampling positions in one experiment, the method is not able to distinguish different PETN explosion events. PMID

  6. Gas explosions in process pipes

    OpenAIRE

    Kristoffersen, Kjetil

    2004-01-01

    In this thesis, gas explosions inside pipes are considered. Laboratory experiments and numerical simulations are the basis of the thesis. The target of the work was to study gas explosions in pipes and to develop numer- ical models that could predict accidental gas explosions inside pipes. Experiments were performed in circular steel and plexiglass pipes. The steel pipes have an inner diameter of 22.3 mm and lengths of 1, 2, 5 and 11 m. The plexiglass pipe has an inner diame...

  7. PROBABILISTIC MODELING OF EXPLOSIVE LOADING

    OpenAIRE

    Mkrtychev Oleg Vartanovich; Dorozhinskiy Vladimir Bogdanovich

    2012-01-01

    According to existing design standards, explosive loading represents a special type of loading. Explosive loading is, in most cases, local in nature, although it can exceed the loads for which buildings are designed by a dozen of times. The analysis of terrorist attacks with explosives employed demonstrates that charges have a great power and, consequently, a substantial shock wave pressure. Blast effects are predictable with a certain probability. Therefore, we cannot discuss ...

  8. Big bacteria

    DEFF Research Database (Denmark)

    Schulz, HN; Jørgensen, BB

    2001-01-01

    , the 80 x 600 mum large Epulopiscium sp. from the gut of tropical fish, are presumably living in a very nutrient-rich medium. Many large bacteria contain numerous inclusions in the cells that reduce the volume of active cytoplasm. The most striking examples of competitive advantage from large cell size...

  9. Anaerobic Metabolism and Bioremediation of Explosives-Contaminated Soil

    Science.gov (United States)

    Boopathy, Raj

    Nitroaromatic compounds pollute soil, water, and food via use of pesticides, plastics, pharmaceuticals, landfill dumping of industrial wastes, and the military use of explosives. Biotransformation of trinitrotoluene and other nitroaromatics by aerobic bacteria in the laboratory has been frequently reported, but the anaerobic bacterial metabolism of nitroaromatics has not been studied as extensively perhaps due to the difficulty in working with anaerobic cultures and the slow growth of anaerobes. Sulfate-reducing and methanogenic bacteria can metabolize nitroaromatic compounds under anaerobic conditions if appropriate electron donors and electron acceptors are present in the environment.

  10. Controlled by Distant Explosions

    Science.gov (United States)

    2007-03-01

    VLT Automatically Takes Detailed Spectra of Gamma-Ray Burst Afterglows Only Minutes After Discovery A time-series of high-resolution spectra in the optical and ultraviolet has twice been obtained just a few minutes after the detection of a gamma-ray bust explosion in a distant galaxy. The international team of astronomers responsible for these observations derived new conclusive evidence about the nature of the surroundings of these powerful explosions linked to the death of massive stars. At 11:08 pm on 17 April 2006, an alarm rang in the Control Room of ESO's Very Large Telescope on Paranal, Chile. Fortunately, it did not announce any catastrophe on the mountain, nor with one of the world's largest telescopes. Instead, it signalled the doom of a massive star, 9.3 billion light-years away, whose final scream of agony - a powerful burst of gamma rays - had been recorded by the Swift satellite only two minutes earlier. The alarm was triggered by the activation of the VLT Rapid Response Mode, a novel system that allows for robotic observations without any human intervention, except for the alignment of the spectrograph slit. ESO PR Photo 17a/07 ESO PR Photo 17a/07 Triggered by an Explosion Starting less than 10 minutes after the Swift detection, a series of spectra of increasing integration times (3, 5, 10, 20, 40 and 80 minutes) were taken with the Ultraviolet and Visual Echelle Spectrograph (UVES), mounted on Kueyen, the second Unit Telescope of the VLT. "With the Rapid Response Mode, the VLT is directly controlled by a distant explosion," said ESO astronomer Paul Vreeswijk, who requested the observations and is lead-author of the paper reporting the results. "All I really had to do, once I was informed of the gamma-ray burst detection, was to phone the staff astronomers at the Paranal Observatory, Stefano Bagnulo and Stan Stefl, to check that everything was fine." The first spectrum of this time series was the quickest ever taken of a gamma-ray burst afterglow

  11. Laser machining of explosives

    Science.gov (United States)

    Perry, Michael D.; Stuart, Brent C.; Banks, Paul S.; Myers, Booth R.; Sefcik, Joseph A.

    2000-01-01

    The invention consists of a method for machining (cutting, drilling, sculpting) of explosives (e.g., TNT, TATB, PETN, RDX, etc.). By using pulses of a duration in the range of 5 femtoseconds to 50 picoseconds, extremely precise and rapid machining can be achieved with essentially no heat or shock affected zone. In this method, material is removed by a nonthermal mechanism. A combination of multiphoton and collisional ionization creates a critical density plasma in a time scale much shorter than electron kinetic energy is transferred to the lattice. The resulting plasma is far from thermal equilibrium. The material is in essence converted from its initial solid-state directly into a fully ionized plasma on a time scale too short for thermal equilibrium to be established with the lattice. As a result, there is negligible heat conduction beyond the region removed resulting in negligible thermal stress or shock to the material beyond a few microns from the laser machined surface. Hydrodynamic expansion of the plasma eliminates the need for any ancillary techniques to remove material and produces extremely high quality machined surfaces. There is no detonation or deflagration of the explosive in the process and the material which is removed is rendered inert.

  12. Tenderizing Meat with Explosives

    Science.gov (United States)

    Gustavson, Paul K.; Lee, Richard J.; Chambers, George P.; Solomon, Morse B.; Berry, Brad W.

    2001-06-01

    Investigators at the Food Technology and Safety Laboratory have had success tenderizing meat by explosively shock loading samples submerged in water. This technique, referred to as the Hydrodynamic Pressure (HDP) Process, is being developed to improve the efficiency and reproducibility of the beef tenderization processing over conventional aging techniques. Once optimized, the process should overcome variability in tenderization currently plaguing the beef industry. Additional benefits include marketing lower quality grades of meat, which have not been commercially viable due to a low propensity to tenderization. The simplest and most successful arrangement of these tests has meat samples (50 to 75 mm thick) placed on a steel plate at the bottom of a plastic water vessel. Reported here are tests which were instrumented by Indian Head investigators. Carbon-composite resistor-gauges were used to quantify the shock profile delivered to the surface of the meat. PVDF and resistor gauges (used later in lieu of PVDF) provided data on the pressure-time history at the meat/steel interface. Resulting changes in tenderization were correlated with increasing shock duration, which were provided by various explosives.

  13. Kaliski's explosive driven fusion experiments

    International Nuclear Information System (INIS)

    An experiment performed by a group in Poland on the production of DD fusion neutrons by purely explosive means is discussed. A method for multiplying shock velocities ordinarily available from high explosives by a factor of ten is described, and its application to DD fusion experiments is discussed

  14. Lidar Detection of Explosives Traces

    Science.gov (United States)

    Bobrovnikov, Sergei M.; Gorlov, Evgeny V.; Zharkov, Victor I.; Panchenko, Yury N.

    2016-06-01

    The possibility of remote detection of traces of explosives using laser fragmentation/laser-induced fluorescence (LF/LIF) is studied. Experimental data on the remote visualization of traces of trinitrotoluene (TNT), hexogen (RDX), trotyl-hexogen (Comp B), octogen (HMX), and tetryl with a scanning lidar detector of traces of nitrogen-containing explosives at a distance of 5 m are presented.

  15. Lidar Detection of Explosives Traces

    OpenAIRE

    Bobrovnikov Sergei M.; Gorlov Evgeny V.; Zharkov Victor I.; Panchenko Yury N.

    2016-01-01

    The possibility of remote detection of traces of explosives using laser fragmentation/laser-induced fluorescence (LF/LIF) is studied. Experimental data on the remote visualization of traces of trinitrotoluene (TNT), hexogen (RDX), trotyl-hexogen (Comp B), octogen (HMX), and tetryl with a scanning lidar detector of traces of nitrogen-containing explosives at a distance of 5 m are presented.

  16. Nanosensors for trace explosive detection

    Directory of Open Access Journals (Sweden)

    Larry Senesac

    2008-03-01

    Full Text Available Selective and sensitive detection of explosives is very important in countering terrorist threats. Detecting trace explosives has become a very complex and expensive endeavor because of a number of factors, such as the wide variety of materials that can be used as explosives, the lack of easily detectable signatures, the vast number of avenues by which these weapons can be deployed, and the lack of inexpensive sensors with high sensitivity and selectivity. High sensitivity and selectivity, combined with the ability to lower the deployment cost of sensors using mass production, is essential in winning the war on explosives-based terrorism. Nanosensors have the potential to satisfy all the requirements for an effective platform for the trace detection of explosives.

  17. Degradation of Ochratoxin A by Brevibacterium Species

    OpenAIRE

    Rodriguez, Héctor; Reverón, Inés; Doria, Francesca; Costantini, Antonella; Rivas, Blanca de las; Muñoz, Rosario; García-Moruno, Emilia

    2011-01-01

    The ability to degrade ochratoxin A was studied in different bacteria with a well-known capacity to transform aromatic compounds. Strains belonging to Rhodococcus, Pseudomonas, and Brevibacterium genera were grown in liquid synthetic culture medium containing ochratoxin A. Brevibacterium spp. strains showed 100% degradation of ochratoxin A.Ochratoxin ¿ was detected and identified by high-performance liquid chromatographymass spectrometry (HPLC-MS) as a degradation product in the cellfree supe...

  18. Assessing nuclear explosions

    Science.gov (United States)

    Smith, Joseph V.

    The all-Union session on the Geophysical and Geochemical Consequences of Nuclear Explosions at the 1983 AGU Fall Meeting attracted a large audience, and many were unable to find a seat or standing room. The speakers and questioners emphasized the complexity of the processes and the need to extend the computer models. In particular, the global-circulation models presented byscientists from the National Center for Atmospheric Research showed that smoke/dust clouds should cause major changes in the weather systems with great contrast between the temperature perturbations over oceanic, coastal, and continental regions. Important developments in the models and conclusions can be expected over the next few years as AGU members from many disciplines contribute their skills.

  19. Nucleosynthesis in stellar explosions

    Energy Technology Data Exchange (ETDEWEB)

    Woosley, S.E.; Axelrod, T.S.; Weaver, T.A.

    1983-01-01

    The final evolution and explosion of stars from 10 M/sub solar/ to 10/sup 6/ M/sub solar/ are reviewed with emphasis on factors affecting the expected nucleosynthesis. We order our paper in a sequence of decreasing mass. If, as many suspect, the stellar birth function was peaked towards larger masses at earlier times (see e.g., Silk 1977; but also see Palla, Salpeter, and Stahler 1983), this sequence of masses might also be regarded as a temporal sequence. At each stage of Galactic chemical evolution stars form from the ashes of preceding generations which typically had greater mass. A wide variety of Type I supernova models, most based upon accreting white dwarf stars, are also explored using the expected light curves, spectra, and nucleosynthesis as diagnostics. No clearly favored Type I model emerges that is capable of simultaneously satisfying all three constraints.

  20. Nucleosynthesis in stellar explosions

    International Nuclear Information System (INIS)

    The final evolution and explosion of stars from 10 M/sub solar/ to 106 M/sub solar/ are reviewed with emphasis on factors affecting the expected nucleosynthesis. We order our paper in a sequence of decreasing mass. If, as many suspect, the stellar birth function was peaked towards larger masses at earlier times (see e.g., Silk 1977; but also see Palla, Salpeter, and Stahler 1983), this sequence of masses might also be regarded as a temporal sequence. At each stage of Galactic chemical evolution stars form from the ashes of preceding generations which typically had greater mass. A wide variety of Type I supernova models, most based upon accreting white dwarf stars, are also explored using the expected light curves, spectra, and nucleosynthesis as diagnostics. No clearly favored Type I model emerges that is capable of simultaneously satisfying all three constraints

  1. Mixing in explosions

    Energy Technology Data Exchange (ETDEWEB)

    Kuhl, A.L.

    1993-12-01

    Explosions always contain embedded turbulent mixing regions, for example: boundary layers, shear layers, wall jets, and unstable interfaces. Described here is one particular example of the latter, namely, the turbulent mixing occurring in the fireball of an HE-driven blast wave. The evolution of the turbulent mixing was studied via two-dimensional numerical simulations of the convective mixing processes on an adaptive mesh. Vorticity was generated on the fireball interface by baroclinic effects. The interface was unstable, and rapidly evolved into a turbulent mixing layer. Four phases of mixing were observed: (1) a strong blast wave phase; (2) and implosion phase; (3) a reshocking phase; and (4) an asymptotic mixing phase. The flowfield was azimuthally averaged to evaluate the mean and r.m.s. fluctuation profiles across the mixing layer. The vorticity decayed due to a cascade process. This caused the corresponding enstrophy parameter to increase linearly with time -- in agreement with homogeneous turbulence calculations of G.K. Batchelor.

  2. Preliminary study on nitrite degradation by nirS recombinant genetic engineering bacteria%nirS基因重组工程菌降解亚硝酸盐的初步研究

    Institute of Scientific and Technical Information of China (English)

    杨兴兴; 陈学萍; 刘冬秀; 沈洁; 陆永生

    2014-01-01

    通过基因工程手段增加厌氧氨氧化菌亚硝酸盐还原酶(nitrite reductase, nirS)的表达量,运用质粒载体pGEM-T克隆nirS基因。琼脂糖凝胶电泳检测显示, nirS基因重组工程菌在440 bp处有明显的目的条带; nirS基因重组工程菌扩大培养7~8h后即达到生长曲线稳定期,引入外加氮源后,菌体生长情况更优。通过不同菌液投加量以及处理不同初始浓度的亚硝酸钠溶液,检测nirS基因重组工程菌的性能。结果表明,当nirS基因重组工程菌投加30 mL(细菌数为2.3×107个∕mL),亚硝酸盐初始质量浓度为40 mg∕L时,亚硝酸盐去除率达到90%以上。nirS基因重组工程菌可适用于亚硝酸盐废水的处理。%In order to improve the expression quantity of nitrite reductase (nirS) in ANAMMOX bacteria through bioengineering means, nirS gene was cloned using the plasmid vector pGEM-T. A target band of 440 bp PCR products from the recombinant genetic engineering bacter was observed by agarose gel electrophoresis. The nirS recombinant genetic engineering bacteria reached stationary phase after 7-8 hours incubation, the addition of nitrogen source was advantageous to the growth of bacteria significantly. The performance of nirS recombinant genetic engineering bacteria was tested by adding different dosages of bacteria and treating sodium nitrite solu‐tion with different initial concentrations. The results showed that, when 30 mL of nirS recombinant genetic engi‐neering bacteria(2.3 × 107 cells/mL) inoculates was added to the solution with 40 mg/L of initial mass concentra‐tion of nitrite, the removal rate of nitrite reached above 90%. It was indicated that nirS recombinant genetic en‐gineering bacteria could be applied for nitrite-containing wastewater treatment in the future.

  3. Bacteria and bioremediation of marine oil spills

    International Nuclear Information System (INIS)

    Virtually all marine ecosystems harbor indigenous hydrocarbon-degrading bacteria. These hydrocarbon degraders comprise less than one percent of the bacterial community in unpolluted environments, but generally increase to one to ten percent following petroleum contamination. Various hydrocarbons are degraded by these microorganisms at different rates, so there is an evolution in the residual hydrocarbon mixture, and some hydrocarbons and asphaltic petroleum hydrocarbons remain undegraded. Fortunately, these persistent petroleum pollutants are, for the most part, insoluble or are bound to solids; hence they are not biologically available and therefore not toxic to marine organisms. Carbon dioxide, water, and cellular biomass produced by the microorganisms from the degradable hydrocarbons may be consumed by detrital feeders and comprise the end products of the natural biological degradation process. Bioremediation attempts to accelerate the natural hydrocarbon degradation rates by overcoming factors that limit bacterial hydrocarbon degrading activities

  4. Optical detection of explosives: spectral signatures for the explosive bouquet

    Science.gov (United States)

    Osborn, Tabetha; Kaimal, Sindhu; Causey, Jason; Burns, William; Reeve, Scott

    2009-05-01

    Research with canines suggests that sniffer dogs alert not on the odor from a pure explosive, but rather on a set of far more volatile species present in an explosive as impurities. Following the explosive trained canine example, we have begun examining the vapor signatures for many of these volatile impurities utilizing high resolution spectroscopic techniques in several molecular fingerprint regions. Here we will describe some of these high resolution measurements and discuss strategies for selecting useful spectral signature regions for individual molecular markers of interest.

  5. Literature review of the lifetime of DOE materials: Aging of plastic bonded explosives and the explosives and polymers contained therein

    Energy Technology Data Exchange (ETDEWEB)

    Burgess, C.E.; Woodyard, J.D. [West Texas A and M Univ., Canyon, TX (United States); Rainwater, K.A. [Texas Tech Univ., Lubbock, TX (United States); Lightfoot, J.M. [Pantex Plant, Amarillo, TX (United States); Richardson, B.R. [Engineered Carbons, Inc., Borger, TX (United States)

    1998-09-01

    There are concerns about the lifetime of the nation`s stockpile of high explosives (HEs) and their components. The DOE`s Core Surveillance and Enhanced Surveillance programs specifically target degradation of HE, binders, and plastic-bonded explosives (PBXs) for determination of component lifetimes and handling procedures. The principal goal of this project is to identify the decomposition mechanisms of HEs, plasticizers, and plastic polymer binders resulting from exposure to ionizing radiation, heat, and humidity. The primary HEs of concern are 1,3,5-triamino-2,4,6-trinitrobenzene (TATB) and 1,3,5,7-tetranitro-1,3,5,7-tetraazocyclooctane (HMX). Hexahydro-1,3,5-triazine (RDX) is closely related to these two compounds and is also included in the literature review. Both Kel-F 800 and Estane are polymers of interest. A stabilizer, Irganox 1010, and an energetic plasticizer that is a blend of acetaldehyde 2,2-dinitropropyl acetal, are also of interest, but the focus of this report will be on the explosives and polymers. This presents a literature review that provides background on the synthesis, degradation, and techniques to analyze TATB, HMX, RDX, Kel-F 800, Estane, and the PBXs of these compounds. As there are many factors that can influence degradation of materials, the degradation discussion will be divided into sections based on each factor and how it might affect the degradation mechanism. The factors reviewed that influence the degradation of these materials are exposure to heat, UV- and {gamma}-irradiation, and the chemistry of these compounds. The report presents a recently compiled accounting of the available literature. 80 refs., 7 figs.

  6. Research on the Biochemical Degradation of Ammonia Nitrogen in Wastewater with High Salinity by Salt Tolerant Nitrifying Bacteria Liquid%利用耐盐硝化菌液强化高盐废水氨氮生化降解的研究

    Institute of Scientific and Technical Information of China (English)

    许一平; 李亮; 李超; 付春明; 郝润秋; 阮晓磊

    2015-01-01

    The activated sludge was acclimated into high salt tolerant sludge through increasing the concentration of sodium chloride and ammonia nitrogen periodically. Ammonia nitrogen was degraded from 100 mg/L to below 15 mg/L by the high salt tolerant sludge in 24 h, when the sodium chloride content of influent was 30 mg/L. Bacteria liquid containing salt tolerant nitrifying bacteria were cultured by the salt tolerant nitrifying bacteria enriched and screened from high salt tolerant sludge. The quantity of bacteria in the bacteria liquid was largest when the growth time was 24 h. The ammonia nitrogen biodegradation process was effectively enhanced after the 24 h growth bacteria liquid was put into wastewater with high salinity in a certain proportion. The removal rate of ammonia nitrogen was proportionate to the dosage of the salt tolerant nitrifying bacteria liquid.%通过阶段性提高氯化钠和氨氮浓度,将生活污水二沉池活性污泥驯化成为耐盐硝化污泥。在进水 NaCl含量为30 mg/L的条件下,经过24 h处理后,耐盐硝化污泥可以将氨氮从100 mg/L降解到15 mg/L以下。对该污泥进行富集筛选出耐盐硝化菌。利用分离出的菌种培养出含有耐盐硝化菌的菌液。菌液生长时间24 h时,细菌数量最大。将生长24 h的耐盐硝化菌液以一定比例投入高含盐的废水中,可以有效强化氨氮的生化降解过程,并且氨氮的去除率与耐盐硝化菌液的投加量成正比关系。

  7. Bacteria Provide Cleanup of Oil Spills, Wastewater

    Science.gov (United States)

    2010-01-01

    Through Small Business Innovation Research (SBIR) contracts with Marshall Space Flight Center, Micro-Bac International Inc., of Round Rock, Texas, developed a phototrophic cell for water purification in space. Inside the cell: millions of photosynthetic bacteria. Micro-Bac proceeded to commercialize the bacterial formulation it developed for the SBIR project. The formulation is now used for the remediation of wastewater systems and waste from livestock farms and food manufacturers. Strains of the SBIR-derived bacteria also feature in microbial solutions that treat environmentally damaging oil spills, such as that resulting from the catastrophic 2010 Deepwater Horizon oil rig explosion in the Gulf of Mexico.

  8. Approach for Service Life Extension of Explosive Devices for Aircraft Escape Systems

    Science.gov (United States)

    Bement, L. J.; Schimmel, M. L.

    1985-01-01

    The service life evaluation of explosive devices used in a wide variety of aircraft escape systems is described. The purpose was to develop a service extension approach, supported by tests on candidate devices, to evaluate the effects of service, age, and degradation, and allow responsible, conservative, service life determinations. An overview is given on the recommended approach and experimental procedures for accurate service evaluations with test results on rigid and flexible explosive transfer lines, one-way transfers, and flexible linear shaped charges.

  9. Explosive signatures: Pre & post blast

    Science.gov (United States)

    Bernier, Evan Thomas

    Manuscripts 1 and 2 of this dissertation both involve the pre-blast detection of trace explosive material. The first manuscript explores the analysis of human hair as an indicator of exposure to explosives. Field analysis of hair for trace explosives is quick and non-invasive, and could prove to be a powerful linkage to physical evidence in the form of bulk explosive material. Individuals tested were involved in studies which required handling or close proximity to bulk high explosives such as TNT, PETN, and RDX. The second manuscript reports the results of research in the design and application of canine training aids for non-traditional, peroxide-based explosives. Organic peroxides such as triacetonetriperoxide (TATP) and hexamethylenetriperoxidediamine (HMTD) can be synthesized relatively easily with store-bought ingredients and have become popular improvised explosives with many terrorist groups. Due to the hazards of handling such sensitive compounds, this research established methods for preparing training aids which contained safe quantities of TATP and HMTD for use in imprinting canines with their characteristic odor. Manuscripts 3 and 4 of this dissertation focus on research conducted to characterize pipe bombs during and after an explosion (post-blast). Pipe bombs represent a large percentage of domestic devices encountered by law enforcement. The current project has involved the preparation and controlled explosion of over 90 pipe bombs of different configurations in order to obtain data on fragmentation patterns, fragment velocity, blast overpressure, and fragmentation distance. Physical data recorded from the collected fragments, such as mass, size, and thickness, was correlated with the relative power of the initial device. Manuscript 4 explores the microstructural analysis of select pipe bomb fragments. Shock-loading of the pipe steel led to plastic deformation and work hardening in the steel grain structure as evidenced by optical microscopy and

  10. Radiologic diagnosis of explosion casualties.

    Science.gov (United States)

    Eastridge, Brian J; Blackbourne, Lorne; Wade, Charles E; Holcomb, John B

    2008-01-01

    The threat of terrorist events on domestic soil remains an ever-present risk. Despite the notoriety of unconventional weapons, the mainstay in the armament of the terrorist organization is the conventional explosive. Conventional explosives are easily weaponized and readily obtainable, and the recipes are widely available over the Internet. According to the US Department of State and the Federal Bureau of Investigation, over one half of the global terrorist events involve explosions, averaging two explosive events per day worldwide in 2005 (Terrorism Research Center. Available at www.terrorism.com. Accessed April 1, 2007). The Future of Emergency Care in the United States Health System: Emergency Medical Services at the Crossroads, published by the Institute of Medicine, states that explosions were the most common cause of injuries associated with terrorism (Institute of Medicine Report: The Future of Emergency Care in the United States Health System: Emergency Medical Services at the Crossroads. Washington DC: National Academic Press, 2007). Explosive events have the potential to inflict numerous casualties with multiple injuries. The complexity of this scenario is exacerbated by the fact that few providers or medical facilities have experience with mass casualty events in which human and material resources can be rapidly overwhelmed. Care of explosive-related injury is based on same principles as that of standard trauma management paradigms. The basic difference between explosion-related injury and other injury mechanisms are the number of patients and multiplicity of injuries, which require a higher allocation of resources. With this caveat, the appropriate utilization of radiology resources has the potential to impact in-hospital diagnosis and triage and is an essential element in optimizing the management of the explosive-injured patients. PMID:19069034

  11. 不同盐浓度、培养基和微量元素对嗜蜡菌PWⅠ降解固体石蜡的影响研究%Study on the Effects of Different Salt Concentration, Culture Media and Trace Elements on the Degradation of Paraffin Wax by Paraffin-thirsty Bacteria PWⅠ

    Institute of Scientific and Technical Information of China (English)

    侯巨梅; 刘铜

    2014-01-01

    The degradation effects of paraffin by paraffin-thirsty bacteria PWⅠ under the concentrations of different salt concentration, culture media and trace elements were studied. The results showed that the degradation rate of paraffin by paraffin-thirsty bacteria PWⅠreached the maximum (47.31%) when salt concentration was 1%. And the degradation rate of paraffin in liquid culture medium of paraffin was 47.76%. Different trace elements had obvious effects on the degradation of paraffin. The degradation rates of paraffin when Cu2+concentration, Zn2+concentration and Fe2+concentration were 0.10, 0.07 and 0.55μmol/L respectively reached the maximum values, being 48.30%, 47.95% and 45.26% respectively. These results will be helpful for applying PWⅠin paraffin removal and control of oil well in biological technology and enhancing the oil productivity of oil well.%对嗜蜡菌PWⅠ在不同盐浓度、培养基和微量元素中降解石蜡的效果进行了研究。结果表明,嗜蜡菌PWⅠ在盐浓度为1%时对石蜡降解率达到最大,其石蜡降解率为47.31%;在石蜡液体培养基中降解率为47.76%;不同微量元素对石蜡降解有较明显的影响,Cu2+、Zn2+、Fe2+离子浓度分别在0.10、0.07和0.55μmol/L时,对石蜡降解率最高,分别为48.30%、47.95%和45.26%。上述研究结果将有助于该菌应用于油藏油井的生物清蜡防蜡技术中,并可提高油井的采油率。

  12. Rumen bacteria

    International Nuclear Information System (INIS)

    The rumen is the most extensively studied gut community and is characterized by its high population density, wide diversity and complexity of interactions. This complex, mixed microbial culture is comprised of prokaryote organisms including methane-producing archaebacteria, eukaryote organisms, such as ciliate and flagellate protozoa, anaerobic phycomycete fungi and bacteriophage. Bacteria are predominant (up to 1011 viable cells per g comprising 200 species) but a variety of ciliate protozoa occur widely (104-106/g distributed over 25 genera). The anaerobic fungi are also widely distributed (zoospore population densities of 102-104/g distributed over 5 genera). The occurrence of bacteriophage is well documented (107-109 particles/g). This section focuses primarily on the widely used methods for the cultivation and the enumeration of rumen microbes, especially bacteria, which grow under anaerobic conditions. Methods that can be used to measure hydrolytic enzymes (cellulases, xylanases, amylases and proteinases) are also described, along with cell harvesting and fractionation procedures. Brief reference is also made to fungi and protozoa, but detailed explanations for culturing and enumerating these microbes is presented in Chapters 2.4 and 2.5

  13. Active explosion barrier performance against methane and coal dust explosions

    Institute of Scientific and Technical Information of China (English)

    J J L du Plessis

    2015-01-01

    Preventing the propagation of methane or coal dust explosions through the use of active explosion-suppression systems remains one of the most underutilised explosion controls in underground coal mines. As part of the effort to develop better technologies to safeguard mines, the use of active barrier systems was investigated at Kloppersbos in South Africa. The system is designed to meet the requirements of the European Standard (EN 14591-4 2007) as well as the Mine Safety Standardisation in the Ministry of Coal Industry, Coal Industrial l Standard of the Peoples Republic of China (MT 694-1997). From the tests conducted, it can be concluded that the ExploSpot System was successful in stopping flame propagation for both methane and methane and coal dust hybrid explosions when ammonium phosphate powder was used as the suppression material. The use of this barrier will provide coal mine management with an additional explosion control close to the point of ignition and may find application within longwall faces further protecting mines against the risk of an explosion propagating throughout a mine.

  14. Bacterial isolates degrading aliphatic polycarbonates.

    Science.gov (United States)

    Suyama, T; Hosoya, H; Tokiwa, Y

    1998-04-15

    Bacteria that degrade an aliphatic polycarbonate, poly(hexamethylene carbonate), were isolated from river water in Ibaraki. Prefecture, Japan, after enrichment in liquid medium containing poly(hexamethylene carbonate) suspensions as carbon source, and dilution to single cells. Four of the strains, 35L, WFF52, 61A and 61B2, degraded poly(hexamethylene carbonate) on agar plate containing suspended poly(hexamethylene carbonate). Degradation of poly(hexamethylene carbonate) was confirmed by gel permeation chromatography. Besides poly(hexamethylene carbonate), the strains were found to degrade poly(tetramethylene carbonate). The strains were characterized morphologically, physiologically, and by 16S rDNA sequence analysis. Strains 35L and WFF52 were tentatively identified as Pseudomonas sp. and Variovorax sp., respectively, while strains 61A and 61B2 constitute an unidentified branch within the beta subclass of the Proteobacteria.

  15. Explosive Contagion in Networks

    Science.gov (United States)

    Gómez-Gardeñes, J.; Lotero, L.; Taraskin, S. N.; Pérez-Reche, F. J.

    2016-01-01

    The spread of social phenomena such as behaviors, ideas or products is an ubiquitous but remarkably complex phenomenon. A successful avenue to study the spread of social phenomena relies on epidemic models by establishing analogies between the transmission of social phenomena and infectious diseases. Such models typically assume simple social interactions restricted to pairs of individuals; effects of the context are often neglected. Here we show that local synergistic effects associated with acquaintances of pairs of individuals can have striking consequences on the spread of social phenomena at large scales. The most interesting predictions are found for a scenario in which the contagion ability of a spreader decreases with the number of ignorant individuals surrounding the target ignorant. This mechanism mimics ubiquitous situations in which the willingness of individuals to adopt a new product depends not only on the intrinsic value of the product but also on whether his acquaintances will adopt this product or not. In these situations, we show that the typically smooth (second order) transitions towards large social contagion become explosive (first order). The proposed synergistic mechanisms therefore explain why ideas, rumours or products can suddenly and sometimes unexpectedly catch on.

  16. Disaster management following explosion.

    Science.gov (United States)

    Sharma, B R

    2008-01-01

    Explosions and bombings remain the most common deliberate cause of disasters involving large numbers of casualties, especially as instruments of terrorism. These attacks are virtually always directed against the untrained and unsuspecting civilian population. Unlike the military, civilians are poorly equipped or prepared to handle the severe emotional, logistical, and medical burdens of a sudden large casualty load, and thus are completely vulnerable to terrorist aims. To address the problem to the maximum benefit of mass disaster victims, we must develop collective forethought and a broad-based consensus on triage and these decisions must reach beyond the hospital emergency department. It needs to be realized that physicians should never be placed in a position of individually deciding to deny treatment to patients without the guidance of a policy or protocol. Emergency physicians, however, may easily find themselves in a situation in which the demand for resources clearly exceeds supply and for this reason, emergency care providers, personnel, hospital administrators, religious leaders, and medical ethics committees need to engage in bioethical decision-making. PMID:18522253

  17. Furball Explosive Breakout Test

    Energy Technology Data Exchange (ETDEWEB)

    Carroll, Joshua David [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2015-08-05

    For more than 30 years the Onionskin test has been the primary way to study the surface breakout of a detonation wave. Currently the Onionskin test allows for only a small, one dimensional, slice of the explosive in question to be observed. Asymmetrical features are not observable with the Onionskin test and its one dimensional view. As a result, in 2011, preliminary designs for the Hairball and Furball were developed then tested. The Hairball used shorting pins connected to an oscilloscope to determine the arrival time at 24 discrete points. This limited number of data points, caused by the limited number of oscilloscope channels, ultimately led to the Hairball’s demise. Following this, the Furball was developed to increase the number of data points collected. Instead of shorting pins the Furball uses fiber optics imaged by a streak camera to determine the detonation wave arrival time for each point. The original design was able to capture the detonation wave’s arrival time at 205 discrete points with the ability to increase the number of data points if necessary.

  18. The Cambrian explosion.

    Science.gov (United States)

    Briggs, Derek E G

    2015-10-01

    The sudden appearance of fossils that marks the so-called 'Cambrian explosion' has intrigued and exercised biologists since Darwin's time. In On the Origin of Species, Darwin made it clear that he believed that ancestral forms 'lived long before' their first fossil representatives. While he considered such an invisible record necessary to explain the level of complexity already seen in the fossils of early trilobites, Darwin was at a loss to explain why there were no corresponding fossils of these earlier forms. In chapter 9 of the Origin, entitled 'On the imperfection of the geological record', he emphasized the 'poorness of our palaeontological collections' and stated categorically that 'no organism wholly soft can be preserved'. Fortunately much has been discovered in the last 150 years, not least multiple examples of Cambrian and Precambrian soft-bodied fossils. We now know that the sudden appearance of fossils in the Cambrian (541-485 million years ago) is real and not an artefact of an imperfect fossil record: rapid diversification of animals coincided with the evolution of biomineralized shells. And although fossils in earlier rocks are rare, they are not absent: their rarity reflects the low diversity of life at this time, as well as the low preservation potential of Precambrian organisms (see Primer by Butterfield, in this issue). PMID:26439348

  19. Explosive Blast Neuropathology and Seizures

    Directory of Open Access Journals (Sweden)

    S. Krisztian eKovacs

    2014-04-01

    Full Text Available Traumatic brain injury (TBI due to explosive blast exposure is a leading combat casualty. It is also implicated as a key contributor to war related mental health diseases. A clinically important consequence of all types of TBI is a high risk for development of seizures and epilepsy. Seizures have been reported in patients who have suffered blast injuries in the Global War on Terror but the exact prevalence is unknown. The occurrence of seizures supports the contention that explosive blast leads to both cellular and structural brain pathology. Unfortunately, the exact mechanism by which explosions cause brain injury is unclear, which complicates development of meaningful therapies and mitigation strategies. To help improve understanding, detailed neuropathological analysis is needed. For this, histopathological techniques are extremely valuable and indispensable. In the following we will review the pathological results, including those from immunohistochemical and special staining approaches, from recent preclinical explosive blast studies.

  20. Suppression of stratified explosive interactions

    Energy Technology Data Exchange (ETDEWEB)

    Meeks, M.K.; Shamoun, B.I.; Bonazza, R.; Corradini, M.L. [Wisconsin Univ., Madison, WI (United States). Dept. of Nuclear Engineering and Engineering Physics

    1998-01-01

    Stratified Fuel-Coolant Interaction (FCI) experiments with Refrigerant-134a and water were performed in a large-scale system. Air was uniformly injected into the coolant pool to establish a pre-existing void which could suppress the explosion. Two competing effects due to the variation of the air flow rate seem to influence the intensity of the explosion in this geometrical configuration. At low flow rates, although the injected air increases the void fraction, the concurrent agitation and mixing increases the intensity of the interaction. At higher flow rates, the increase in void fraction tends to attenuate the propagated pressure wave generated by the explosion. Experimental results show a complete suppression of the vapor explosion at high rates of air injection, corresponding to an average void fraction of larger than 30%. (author)

  1. Explosion modelling for complex geometries

    Science.gov (United States)

    Nehzat, Naser

    A literature review suggested that the combined effects of fuel reactivity, obstacle density, ignition strength, and confinement result in flame acceleration and subsequent pressure build-up during a vapour cloud explosion (VCE). Models for the prediction of propagating flames in hazardous areas, such as coal mines, oil platforms, storage and process chemical areas etc. fall into two classes. One class involves use of Computation Fluid Dynamics (CFD). This approach has been utilised by several researchers. The other approach relies upon a lumped parameter approach as developed by Baker (1983). The former approach is restricted by the appropriateness of sub-models and numerical stability requirements inherent in the computational solution. The latter approach raises significant questions regarding the validity of the simplification involved in representing the complexities of a propagating explosion. This study was conducted to investigate and improve the Computational Fluid Dynamic (CFD) code EXPLODE which has been developed by Green et al., (1993) for use on practical gas explosion hazard assessments. The code employs a numerical method for solving partial differential equations by using finite volume techniques. Verification exercises, involving comparison with analytical solutions for the classical shock-tube and with experimental (small-scale, medium and large-scale) results, demonstrate the accuracy of the code and the new combustion models but also identify differences between predictions and the experimental results. The project has resulted in a developed version of the code (EXPLODE2) with new combustion models for simulating gas explosions. Additional features of this program include the physical models necessary to simulate the combustion process using alternative combustion models, improvement to the numerical accuracy and robustness of the code, and special input for simulation of different gas explosions. The present code has the capability of

  2. Lidar Detection of Explosives Traces

    Directory of Open Access Journals (Sweden)

    Bobrovnikov Sergei M.

    2016-01-01

    Full Text Available The possibility of remote detection of traces of explosives using laser fragmentation/laser-induced fluorescence (LF/LIF is studied. Experimental data on the remote visualization of traces of trinitrotoluene (TNT, hexogen (RDX, trotyl-hexogen (Comp B, octogen (HMX, and tetryl with a scanning lidar detector of traces of nitrogen-containing explosives at a distance of 5 m are presented.

  3. Novel methods for detecting buried explosive devices

    Energy Technology Data Exchange (ETDEWEB)

    Kercel, S.W.; Burlage, R.S.; Patek, D.R.; Smith, C.M. [Oak Ridge National Lab., TN (United States); Hibbs, A.D.; Rayner, T.J. [Quantum Magnetics, Inc., San Diego, CA (United States)

    1997-04-01

    Oak Ridge National Laboratory (ORNL) and Quantum Magnetics, Inc. (QM) are exploring novel landmine detection technologies. Technologies considered here include bioreporter bacteria, swept acoustic resonance, nuclear quadrupole resonance (NQR), and semiotic data fusion. Bioreporter bacteria look promising for third-world humanitarian applications; they are inexpensive, and deployment does not require high-tech methods. Swept acoustic resonance may be a useful adjunct to magnetometers in humanitarian demining. For military demining, NQR is a promising method for detecting explosive substances; of 50,000 substances that have been tested, none has an NQR signature that can be mistaken for RDX or TNT. For both military and commercial demining, sensor fusion entails two daunting tasks, identifying fusible features in both present-day and emerging technologies, and devising a fusion algorithm that runs in real-time on cheap hardware. Preliminary research in these areas is encouraging. A bioreporter bacterium for TNT detection is under development. Investigation has just started in swept acoustic resonance as an approach to a cheap mine detector for humanitarian use. Real-time wavelet processing appears to be a key to extending NQR bomb detection into mine detection, including TNT-based mines. Recent discoveries in semiotics may be the breakthrough that will lead to a robust fused detection scheme.

  4. Novel methods for detecting buried explosive devices

    Science.gov (United States)

    Kercel, Stephen W.; Burlage, Robert S.; Patek, David R.; Smith, Cyrus M.; Hibbs, Andrew D.; Rayner, Timothy J.

    1997-07-01

    Oak Ridge National Laboratory and Quantum Magnetics, Inc. are exploring novel landmine detection technologies. Technologies considered here include bioreporter bacteria, swept acoustic resonance, nuclear quadrupole resonance (NQR), and semiotic data fusion. Bioreporter bacteria look promising for third-world humanitarian applications; they are inexpensive, and deployment does not require high-tech methods. Swept acoustic resonance may be a useful adjunct to magnetometers in humanitarian demining. For military demining, NQR is a promising method for detecting explosive substances; of 50,000 substances that have been tested, one has an NQR signature that can be mistaken for RDX or TNT. For both military and commercial demining, sensor fusion entails two daunting tasks, identifying fusible features in both present-day and emerging technologies, and devising a fusion algorithm that runs in real-time on cheap hardware. Preliminary research in these areas is encouraging. A bioreporter bacterium for TNT detection is under development. Investigation has just started in swept acoustic resonance as an approach to a cheap mine detector for humanitarian use. Real-time wavelet processing appears to be a key to extending NQR bomb detection into mine detection, including TNT-based mines. Recent discoveries in semiotics may be the breakthrough that will lead to a robust fused detection scheme.

  5. 一株降解芘的苍白杆菌的分离、鉴定及性能表征%Isolation, identification and characteristics of pyrene degrading bacteria Ochrobactrum sp.

    Institute of Scientific and Technical Information of China (English)

    谢文娟; 林爱军; 杨晓进; 王凤花; SHIM Hojae

    2011-01-01

    A pyrene-degrading bacterium strain named PW was isolated from the soils contaminated with polycyclic aromatic hydrocarbons (PAHs) in Beijing Coking Plant using an enrichment culture. It was identified according to its morphology and molecular biology analysis. This bacterium belongs to the strain Ochrobactrum sp. This strain was domesticated for a period of time by a large dose method, and then shake flask experiments were used to study the influence of environmental conditions on the degradation extent of pyrene. The results showed that after domestication the degradation extent increased from 62. 3% to 92. 7% on the 5th day. The bacterium strain PW could degrade pyrene at temperatures ranging from 20 to 40 ℃, and the degradation extent at 30 ℃ was the highest. The degradation extents were above 45% in cultural mediums at a wide range of pH from 5 to 10. The results also indicated that the pyrene degradation could be affected by salt concentration and the degradation effects were better when the mass fraction of NaCl in the culture medium was less than 3%. Further study showed that the strain PW could was resistant to high concentrations of some heavy metal ions.%采用富集培养的方法从北京焦化厂多环芳烃(PAHs)污染土壤中筛选到一株高效降解芘的微生物,命名为PW,分子生物学等手段鉴定此菌株属于苍白杆菌属(Ochrobactrum sp.).经一次性大剂量方法对此菌株进行驯化后,考察了摇瓶条件下环境因素对此菌株降解芘效率的影响.结果表明,驯化培养使得菌株5d内对0.5mmol/L芘的降解率由62.3%提高到92.7%.此外,该菌株的环境耐受性好,在环境温度为20 ̄40℃下该菌株对芘均具有一定的降解能力,30℃培养时降解效果最好;在pH为5~10的培养基中,PW对芘的降解率均在45%以上;当盐度小于3%时,此菌株对芘降解率在60%以上;同时菌株PW还可耐受一定浓度的重金属.

  6. Simulation Analysis of Indoor Gas Explosion Damage

    Institute of Scientific and Technical Information of China (English)

    钱新明; 陈林顺; 冯长根

    2003-01-01

    The influence factors and process of indoor gas explosion are studied with AutoReaGas explosion simulator. The result shows that venting pressure has great influence on the indoor gas explosion damage. The higher the venting pressure is, the more serious the hazard consequence will be. The ignition location has also evident effect on the gas explosion damage. The explosion static overpressure would not cause major injury to person and serious damage to structure in the case of low venting pressure (lower than 2 kPa). The high temperature combustion after the explosion is the major factor to person injury in indoor gas explosion accidents.

  7. 纤维素降解菌株的筛选及其产酶条件优化%Studies on Screening of Methane Fermentation Cellulose degrading Bacteria and its Optimization of Culture Conditions

    Institute of Scientific and Technical Information of China (English)

    高星爱; 黄枭; 张永锋; 赵新颖; 程孟秋; 刘鹏; 刘思言

    2012-01-01

    为了寻求快速有效降解沼气发酵有机质中的高分子化合物,本实验从腐殖质土壤中筛选到一株高效降解纤维素菌株,在以羧甲基纤维素钠为唯一碳源的液体培养基中培养,所产生的纤维素酶对玉米芯和滤纸均表现出较强降解能力.其次做了对菌株培养条件优化的实验,结果表明,菌株的最佳降解纤维素条件为反应温度30℃、发酵液接种量为1%、0.75%羧甲基纤维素钠为碳源、1.5%胰蛋白胨为氮源,优化菌株培养条件后,纤维素酶活力增加了2.8倍.%In order to be effective, rapid degradation of organic polymer compound biogas fermentation, from soil degradation to a plant screening high efficiency degradation cellulose strain. In sodium carboxyl methyl cellulose as the only carbon source of liquid medium training strains, the cellulose enzyme produced for several and filter paper are show have better degradation ability. Next to the optimization of the strains of the culture condition experiment results show that the best cellulolytic strains of the conditions for the reaction temperature 30°C, fermented liquid 1% inoculated quantity, carbon source sodium carboxyl methyl cellulose 0.75%, had 1.5% nitrogen pancreatic specially designed, and so on. Optimization strains after the culture condition, cellulose enzyme activity has increased 2.8times.

  8. Degradation of TATP, TNT, and RDX using mechanically alloyed metals

    Science.gov (United States)

    Clausen, Christian (Inventor); Geiger, Cherie (Inventor); Sigman, Michael (Inventor); Fidler, Rebecca (Inventor)

    2012-01-01

    Bimetallic alloys prepared in a ball milling process, such as iron nickel (FeNi), iron palladium (FePd), and magnesium palladium (MgPd) provide in situ catalyst system for remediating and degrading nitro explosive compounds. Specifically, munitions, such as, 2,4,6-trinitrotoluene (TNT), cyclo-1,3,5-trimethylene-2,4,6-trinitramine (RDX), nitrocellulose and nitroglycerine that have become contaminants in groundwater, soil, and other structures are treated on site to remediate explosive contamination.

  9. Tagging of Explosives for Detection

    Directory of Open Access Journals (Sweden)

    J. S. Gharia

    2000-01-01

    Full Text Available This paper gives the results of a study on estimation of shelf life of2,3-dimethyI2,3-dinitrobutane (DMNB-tagged RDX and PETN expiosives by monitoring DMNB depletion by high performanceliquid chromatography and simultaneously recording the detectability of the tagged explosive composition using explosive vapoUf detector Model-97 HS. DMNB was incorporated in the explosive using methanol as solvent for DMNB and the explosive compositions were stored at 35,55 and 75 °C over a long period. Methods developed for preparing the homogeneously tagged composition with DMNB at 0.5 per cent level and for the analysis ofDMNB for ensuring homogeneity of DMNB in the composition are described. The results show no change in compatibility and sensitivity on the incorporation of DMNB in the explosive. Estimation of shelf life of DMNB in the explosive was done for a period of storage of 202-304 days at different temperatures.

  10. How Bacteria Turn Fiber into Food

    OpenAIRE

    Martens, Eric C.; Lowe, Elisabeth C.; Chiang, Herbert; Nicholas A Pudlo; Wu, Meng; McNulty, Nathan P.; Abbott, D Wade; Henrissat, Bernard; Gilbert, Harry J.; Bolam, David N.; Jeffrey I Gordon

    2011-01-01

    Symbiotic bacteria inhabiting the human gut have evolved under intense pressure to utilize complex carbohydrates, primarily plant cell wall glycans in our diets. These polysaccharides are not digested by human enzymes, but are processed to absorbable short chain fatty acids by gut bacteria. The Bacteroidetes, one of two dominant bacterial phyla in the adult gut, possess broad glycan-degrading abilities. These species use a series of membrane protein complexes, termed Sus-like systems, for cat...

  11. 辽河口湿地耐盐石油降解菌作用效果与条件优化研究%A STUDY ON THE EFFECT AND OPTIMAL CONDITIONS OF SALT TOLERANT PETROLEUM-DEGRADING BACTERIA FROM LIAOHE ESTUARY WETLANDS

    Institute of Scientific and Technical Information of China (English)

    潘益锋; 白洁; 钟丽华; 陈田

    2013-01-01

    In order to explore the optimal conditions of salt tolerant high efficiency petroleum-degrading bacteria, which were screened and isolated the from polluted soil samples from Liaohe Estuary Wetlands, hydrogen peroxide, Tween-80 and activated carbon fibers were used in the culture medium. The survey showed that, the optimum dosages of the three media mentioned above were 150mg/L, 160mg/ L, and 6g/L respectively. Under these optimal conditions, the oil degradation efficiencies were all increased. The oil degradation rates of salt tolerant strain were over 40% at 10℃ after one week, while the degradation rates could achieve over 80% at the optimal temperature (30℃).%采用投加过氧化氢、吐温-80和活性炭纤维等方法对筛选、分离自辽河口湿地石油污染土壤样品的耐盐高效石油降解菌的优化条件进行研究.结果表明,过氧化氢的最佳投加量为150 mg/L;吐温-80的最佳投加量为160mg/L;活性炭纤维的最佳投加量为6 g/L.3种优化条件下石油降解率均有增加,培养1周后,耐盐菌株在10℃下的石油降解率在40%以上,而在最适温度30℃下的石油降解率达到80%以上.

  12. Analysis of anionic post-blast residues of low explosives from soil samples of forensic interest

    International Nuclear Information System (INIS)

    The growing threats and terrorist activities in recent years have urged the need for rapid and accurate forensic investigation on post-blast samples. The analysis of explosives and their degradation products in soils are important to enable forensic scientist to identify the explosives used in the bombing and establish possible links to their likely origin. Anions of interest for post-blast identification of low explosives were detected and identified using ion chromatography (IC). IC separations of five anions (Cl-, NO2-, NO3-, SO42-, SCN-) employed a Metrosep Anion Dual 2 column with carbonate eluent. The anions were separated within 17 minutes. Sampling of post blast residues was carried out in Rompin, Pahang. The post-blast explosive residues were extracted from soil samples collected at the seat of three simulated explosion points. The homemade explosives comprised of black powder of various amounts (100 g, 150 g and 200 g) packed in small plastic sauce bottles. In black powder standard, three anions (Cl-, NO3-, SO42-) were identified. However, low amounts of nitrite (NO2-) were found present in post-blast soil samples. The amounts of anions were generally found to be decreased with decreasing amount of black powder explosive used. The anions analysis was indicative that nitrates were being used as one of the black powder explosive ingredients. (author)

  13. 甲胺磷生物降解酶对韭菜中农残生物修复效果研究1)%Bioremediation from Enzyme of Methamidophos Pesticide Degrading Bacteria to Chives

    Institute of Scientific and Technical Information of China (English)

    张娜; 郭庆启; 刘晓飞; 黄文秀; 宋琨; 王双; 李爽

    2013-01-01

    The research uses a Staphylococcus Rosehbach XY‐C separated in the alkaline cold black soil in Daqing .Liquid culture is used to make Staphylococcus Rosehbach XY‐C produce methamidophos dgrada‐tion enzyme .Degradation technological parameters of the coarse enzyme to methamidophos pesticide resi‐dues are determined according to single factor test .The technological parameters use degradation ratio of methamidophos as evaluation indicator .Based on the experimental data ,the optimum degradation condi‐tions of coarse enzyme to the biodegradation of methamidophos in chives are obtained .The optimum con‐ditions are :optimal temperature is 45℃ ,optimal enzyme dosage is 20mL ,spray three times respective and optimal reaction time is 20min .Degradation ratio of coarse enzyme to methamidophos pesticide resi‐dues was 67 .17 ± 1 .17% based on the optimum degradation conditions .%  利用大庆碱性寒地黑土分离得到的一株葡萄球菌XY‐C ,采用含甲胺磷的液态培养基对该菌株代谢产酶。通过单因素确定该酶对韭菜中甲胺磷农药残留的降解工艺参数,以甲胺磷降解率作为评价指标。获得了粗酶液对韭菜中甲胺磷农药降解的最佳降解条件为:降解温度45℃,酶液添加量20mL ,分别喷洒3次,于45℃降解反应20min ,采用最优降解条件,粗酶液对韭菜中甲胺磷农药的实际降解率达到67.17±1.17%。

  14. Genetically engineered microorganisms for the detection of explosives' residues

    Directory of Open Access Journals (Sweden)

    Benjamin eShemer

    2015-10-01

    Full Text Available The manufacture and use of explosives throughout the past century has resulted in the extensive pollution of soils and groundwater, and the widespread interment of landmines imposes a major humanitarian risk and prevents civil development of large areas. As most current landmine detection technologies require actual presence at the surveyed areas, thus posing a significant risk to personnel, diverse research efforts are aimed at the development of remote detection solutions. One possible means proposed to fulfill this objective is the use of microbial bioreporters: genetically engineered microorganisms tailored to generate an optical signal in the presence of explosives’ vapors. The use of such sensor bacteria will allow to pinpoint the locations of explosive devices in a minefield. While no study has yet resulted in a commercially operational system, significant progress has been made in the design and construction of explosives-sensing bacterial strains. In this article we review the attempts to construct microbial bioreporters for the detection of explosives, and analyze the steps that need to be undertaken for this strategy to be applicable for landmine detection.

  15. Effects of oral administration of metronidazole and doxycycline on olfactory capabilities of explosives detection dogs.

    Science.gov (United States)

    Jenkins, Eileen K; Lee-Fowler, Tekla M; Angle, T Craig; Behrend, Ellen N; Moore, George E

    2016-08-01

    OBJECTIVE To determine effects of oral administration of metronidazole or doxycycline on olfactory function in explosives detection (ED) dogs. ANIMALS 18 ED dogs. PROCEDURES Metronidazole was administered (25 mg/kg, PO, q 12 h for 10 days); the day prior to drug administration was designated day 0. Odor detection threshold was measured with a standard scent wheel and 3 explosives (ammonium nitrate, trinitrotoluene, and smokeless powder; weight, 1 to 500 mg) on days 0, 5, and 10. Lowest repeatable weight detected was recorded as the detection threshold. There was a 10-day washout period, and doxycycline was administered (5 mg/kg, PO, q 12 h for 10 days) and the testing protocol repeated. Degradation changes in the detection threshold for dogs were assessed. RESULTS Metronidazole administration resulted in degradation of the detection threshold for 2 of 3 explosives (ammonium nitrate and trinitrotoluene). Nine of 18 dogs had a degradation of performance in response to 1 or more explosives (5 dogs had degradation on day 5 or 10 and 4 dogs had degradation on both days 5 and 10). There was no significant degradation during doxycycline administration. CONCLUSIONS AND CLINICAL RELEVANCE Degradation in the ability to detect odors of explosives during metronidazole administration at 25 mg/kg, PO, every 12 hours, indicated a potential risk for use of this drug in ED dogs. Additional studies will be needed to determine whether lower doses would have the same effect. Doxycycline administered at the tested dose appeared to be safe for use in ED dogs. PMID:27463556

  16. He-Ne激光诱变选育高效石油烃降解菌的研究%Study on screening of a highly petroleum hydrocarbon-degrading bacteria by He-Ne laser induced mutation

    Institute of Scientific and Technical Information of China (English)

    张子间; 刘勇弟; 卢杰; 张立辉

    2012-01-01

    采用He-Ne激光器对绿针假单胞菌(Pseudomonas chlororaphis)进行激光诱变育种。在激光照射功率10 mW,时间10 min条件下,筛选到一株遗传性状稳定的高效石油烃降解菌PS 2。摇瓶实验发现当培养液中初始柴油含量为0.2%~0.5%(V/V)、温度为30℃左右、pH值为7~8的条件下,突变菌PS 2对石油烃的降解效果最好。在最适生长条件下,突变菌PS 2在120 h内将培养液中的石油烃完全降解且不存在延滞期,比出发菌株少用24 h。结果表明,He-Ne激光诱变育种技术是获得高效石油烃降解菌的有效途径之一。%The Pseudomonas chlororaphis was irradiated at 10 mW for 10 minutes using He-Ne laser.A mutant PS 2 with steady genetic characteristics and high degradation rate of petroleum hydrocarbon was obtained.The result showed that degradation efficiency is satisfactory when the content of petroleum hydrocarbon is 0.2%-0.5%(V/V),temperture is about 30℃,pH is 7-8 in the batch culture experiment.Under these conditions for optimum growth,petroleum hydrocarbon could be completely degraded by mutant PS 2 within 120 h without lag phase.The results showed that laser inducing was one of effective ways for screening excellent petroleum hydrocarbon-degrading strains.

  17. THE INFLUENCE OF BARRIERS ON FLAME AND EXPLOSION WAVE IN GAS EXPLOSION

    Institute of Scientific and Technical Information of China (English)

    林柏泉; 周世宁; 张仁贵

    1998-01-01

    This paper researches into the influence of barriers on flame and explosion wave in gasexplosion on the basis of experiment. The result shows that the barrier is very important to thetransmission of flame and explosion wave in gas explosion. When there are barriers, the speed oftransmission would be very fast and shock wave will appear in gas explosion, which would in-crease gas explosion power. The result of research is very important to prevent gas explosion anddecrease the power of it.

  18. Explosion limits for combustible gases

    Institute of Scientific and Technical Information of China (English)

    TONG Min-ming; WU Guo-qing; HAO Ji-fei; DAI Xin-lian

    2009-01-01

    Combustible gases in coal mines are composed of methane, hydrogen, some multi-carbon alkane gases and other gases. Based on a numerical calculation, the explosion limits of combustible gases were studied, showing that these limits are related to the concentrations of different components in the mixture. With an increase of C4H10 and C6H14, the Lower ExplosionLimit (LEL) and Upper Explosion-Limit (UEL) of a combustible gas mixture will decrease clearly. For every 0.1% increase in C4H10 and C6H14, the LEL decreases by about 0.19% and the UEL by about 0.3%. The results also prove that, by increasing the amount of H2, the UEL of a combustible gas mixture will increase considerably. If the level of H2 increases by 0.1%, the UEL will increase by about 0.3%. However, H2 has only a small effect on the LEL of the combustible gas mixture. Our study provides a theoretical foundation for judging the explosion risk of an explosive gas mixture in mines.

  19. Chryseobacterium indologenes, novel mannanase-producing bacteria

    Directory of Open Access Journals (Sweden)

    Surachai Rattanasuk

    2009-10-01

    Full Text Available Mannanase is a mannan degrading enzyme which is produced by microorganisms, including bacteria. This enzyme can be used in many industrial processes as well as for improving the quality of animal feeds. The aim of the present study was toscreen and characterize the mannanase-producing bacteria. Two genera of bacteria were isolated from Thai soil samples,fermented coconut, and fertilizer. Screening was carried out on agar plates containing mannan stained with iodine solution.The bacteria were identified by partial 16S rRNA gene sequence, biochemical test and morphology, respectively. The mannanase activity was determined by zymogram and DNS method. Two strains of bacteria with mannanase activity were identified as Bacillus and Chryseobacterium. This is the first report of mannanase-producing Chryseobacterium.

  20. The Quiet Explosion

    Science.gov (United States)

    2008-07-01

    A European-led team of astronomers are providing hints that a recent supernova may not be as normal as initially thought. Instead, the star that exploded is now understood to have collapsed into a black hole, producing a weak jet, typical of much more violent events, the so-called gamma-ray bursts. The object, SN 2008D, is thus probably among the weakest explosions that produce very fast moving jets. This discovery represents a crucial milestone in the understanding of the most violent phenomena observed in the Universe. Black Hole ESO PR Photo 23a/08 A Galaxy and two Supernovae These striking results, partly based on observations with ESO's Very Large Telescope, will appear tomorrow in Science Express, the online version of Science. Stars that were at birth more massive than about 8 times the mass of our Sun end their relatively short life in a cosmic, cataclysmic firework lighting up the Universe. The outcome is the formation of the densest objects that exist, neutron stars and black holes. When exploding, some of the most massive stars emit a short cry of agony, in the form of a burst of very energetic light, X- or gamma-rays. In the early afternoon (in Europe) of 9 January 2008, the NASA/STFC/ASI Swift telescope discovered serendipitously a 5-minute long burst of X-rays coming from within the spiral galaxy NGC 2770, located 90 million light-years away towards the Lynx constellation. The Swift satellite was studying a supernova that had exploded the previous year in the same galaxy, but the burst of X-rays came from another location, and was soon shown to arise from a different supernova, named SN 2008D. Researchers at the Italian National Institute for Astrophysics (INAF), the Max-Planck Institute for Astrophysics (MPA), ESO, and at various other institutions have observed the supernova at great length. The team is led by Paolo Mazzali of INAF's Padova Observatory and MPA. "What made this event very interesting," says Mazzali, "is that the X-ray signal was very

  1. 外源微生物对土壤中烟嘧磺隆的降解作用研究%Bioremediation of exogenous degrading bacteria to the nicosulfuron-contaminated soil

    Institute of Scientific and Technical Information of China (English)

    马晓亮; 于佩博; 高鹤南; 张浩

    2011-01-01

    为了探索外源微生物N80(Serratia marcecens)对烟嘧磺隆污染土壤生物修复的可行性,在实验室条件下,分析了温度、土壤pH值、接菌量、农药初始质量比等因素对N80降解烟嘧磺隆效果的影响.同时以小白菜、甜菜、菠菜为供试作物,采用室内盆栽试验法处理污染土壤,液相色谱仪(UVD)测定土壤中烟嘧磺降残留量.结果表明:1)向污染土壤中添加外源微生物菌株N80可以促进土壤中烟嘧磺隆的降解,第30d时,最高降解率可达79.7%;2)N80降解污染土壤中烟嘧磺隆的最适宜条件为25℃,pH=7.0,接种量108 cfu/g,初始质量比10mg/kg.研究表明,向污染土壤中接种一定量的外源微生物菌株N80可以有效降低土壤中烟嘧磺隆的残留量,减轻烟嘧磺隆对敏感作物的药害,达到了预期的生物修复效果.%The present essay is to give a general introduction to our experimental study of the bioremediation for the nicosulfuron contaminated soil by using exogenous microbial N80 (serratia marcecens, isolated in our lab). First of all, we have examined the bioremediate function of N80 strain-a kind of serratia marcecens in the nicosulfuron contaminated soil under laboratory conditions. Analyzing it carefully let us make clear that of all the essential factors of degrading nicosulfuron by N80, the temperature, pH of the soil, the inoculation and initial nicosulfuron concentration are the key ones. It has also become possible to measure the soil residues of the nicosulfuron because of using the liquid chromatography ( UVD). The results of our measurements indicate that N80 grows with nicosulfuron as the unique nitrogen source at the optimal temperature range of 25 ℃ with its pH value being 7.0 in the soil. As a result of the nicosulfuron degradation by N80, the enzyme activity tends to be reduced by the improper temperature and pH value. However, adding N80 can speed up the nicosulfuron degradation in the soil at a rate of 10 mg

  2. Coulomb explosion of "hot spot"

    CERN Document Server

    Oreshkin, V I; Chaikovsky, S A; Artyomov, A P

    2016-01-01

    The study presented in this paper has shown that the generation of hard x rays and high-energy ions, which are detected in pinch implosion experiments, may be associated with the Coulomb explosion of the hot spot that is formed due to the outflow of the material from the pinch cross point. During the process of material outflow, the temperature of the hot spot plasma increases, and conditions arise for the plasma electrons to become continuously accelerated. The runaway of electrons from the hot spot region results in the buildup of positive space charge in this region followed by a Coulomb explosion. The conditions for the hot spot plasma electrons to become continuously accelerated have been revealed and estimates have been obtained for the kinetic energy of the ions generated by the Coulomb explosion.

  3. Seismic coupling of nuclear explosions

    International Nuclear Information System (INIS)

    The new Giant Magnet Experimental Facility employing digital recording of explosion induced motion has been constructed and successfully tested. Particle velocity and piezoresistance gage responses can be measured simultaneously thus providing the capability for determining the multi-component stress-strain history in the test material. This capability provides the information necessary for validation of computer models used in simulation of nuclear underground testing, chemical explosion testing, dynamic structural response, earth penetration response, and etc. This report discusses fully coupled and cavity decoupled explosions of the same energy (0.622 kJ) were carried out as experiments to study wave propagation and attenuation in polymethylmethacrylate (PMMA). These experiments produced particle velocity time histories at strains from 2 x 10-3 to as low as 5.8 x 10-6. Other experiments in PMMA, reported recently by Stout and Larson8 provide additional particle velocity data to strains of 10-1

  4. Evidence for Nearby Supernova Explosions

    CERN Document Server

    Benítez, N; Canelles, M; Benitez, Narciso; Maiz-Apellaniz, Jesus; Canelles, Matilde

    2002-01-01

    Supernova explosions are one of the most energetic--and potentially lethal--phenomena in the Universe. Scientists have speculated for decades about the possible consequences for life on Earth of a nearby supernova, but plausible candidates for such an event were lacking. Here we show that the Scorpius-Centaurus OB association, a group of young stars currently located at~130 parsecs from the Sun, has generated 20 SN explosions during the last 11 Myr, some of them probably as close as 40 pc to our planet. We find that the deposition on Earth of 60Fe atoms produced by these explosions can explain the recent measurements of an excess of this isotope in deep ocean crust samples. We propose that ~2 Myr ago, one of the SNe exploded close enough to Earth to seriously damage the ozone layer, provoking or contributing to the Pliocene-Pleistocene boundary marine extinction.

  5. Optimal dynamic detection of explosives

    Energy Technology Data Exchange (ETDEWEB)

    Moore, David Steven [Los Alamos National Laboratory; Mcgrane, Shawn D [Los Alamos National Laboratory; Greenfield, Margo T [Los Alamos National Laboratory; Scharff, R J [Los Alamos National Laboratory; Rabitz, Herschel A [PRINCETON UNIV; Roslund, J [PRINCETON UNIV

    2009-01-01

    The detection of explosives is a notoriously difficult problem, especially at stand-off distances, due to their (generally) low vapor pressure, environmental and matrix interferences, and packaging. We are exploring optimal dynamic detection to exploit the best capabilities of recent advances in laser technology and recent discoveries in optimal shaping of laser pulses for control of molecular processes to significantly enhance the standoff detection of explosives. The core of the ODD-Ex technique is the introduction of optimally shaped laser pulses to simultaneously enhance sensitivity of explosives signatures while reducing the influence of noise and the signals from background interferents in the field (increase selectivity). These goals are being addressed by operating in an optimal nonlinear fashion, typically with a single shaped laser pulse inherently containing within it coherently locked control and probe sub-pulses. With sufficient bandwidth, the technique is capable of intrinsically providing orthogonal broad spectral information for data fusion, all from a single optimal pulse.

  6. Biodegradation of Asphalt Cement-20 by Aerobic Bacteria

    OpenAIRE

    Pendrys, John P.

    1989-01-01

    Seven gram-negative, aerobic bacteria were isolated from a mixed culture enriched for asphalt-degrading bacteria. The predominant genera of these isolates were Pseudomonas, Acinetobacter, Alcaligenes, Flavimonas, and Flavobacterium. The mixed culture preferentially degraded the saturate and naphthene aromatic fractions of asphalt cement-20. A residue remained on the surface which was resistant to biodegradation and protected the underlying asphalt from biodegradation. The most potent asphalt-...

  7. Managing water addition to a degraded core

    International Nuclear Information System (INIS)

    In this paper the authors present an approach to the development of an accident management plan for adding water to a degraded core. Under certain degraded core conditions, adding water may lead to enhanced hydrogen production, changes in core geometry that would complicate recovery, steam explosions, or recriticality of the reactor core if unborated water is used. Therefore, a primary requisite for the development of an accident management plan for adding water to a degraded core is to ensure that undesirable consequences of water addition are understood so that: (1) their effects can be minimized and an accident can be terminated at the earliest possible stage, and (2) plant personnel can be better prepared to deal with plant responses that appear contrary to desired outcomes when water is added during a core degradation transient. The approach presented here addresses these concerns in the development of an accident management plan

  8. Screening and characterization analysis of oil degrading bacteria producing biosurfactant%产生物表面活性剂石油降解菌筛选及特性研究

    Institute of Scientific and Technical Information of China (English)

    李琦; 黄廷林; 宋进喜; 陈大年

    2012-01-01

    目的 获得产高效生物表面活性剂的菌株,并判定表面活性剂的结构及探索其特性.方法 通过从富油土壤中采用富集培养、血平板分离、排油活性等方法筛选高产表面活性剂菌株并鉴定;采用萃取和柱层析法提纯后HPLC-MS法分析产物结构并分析其理化性质.结果 筛选出产生物表面活性剂高效菌BD-5,经鉴定为铜绿假单胞菌;所产生物表面活性剂为8种鼠李糖脂同系物的混合物;鼠李糖脂溶液对液体石蜡、柴油和甲苯都具有较强的乳化能力;当鼠李糖脂浓度高于临界胶束浓度(CMC)时,长链烷烃和多环芳烃在水相中的表观溶解度随鼠李糖脂浓度的增大而增大,摩尔增溶比(MSR)的变化关系为正十六烷>萘>菲>芘.结论 BD-5菌株产生的生物表面活性剂活性突出,有良好的应用前景.%Aim To get one strain of bacterium producing high-efficient biosurfactant and decern the structure and characteristics of biosurfactant. Methods The high bacteria surfactant of BD-5 in oily soil is determined through twice selection from some processes of enrichment culture, blood plate separation and surface tension test. Simultaneously , on the basis of purification by extraction and column chromatography, the structure as well as physical and chemical properties of biosurfactant must be determined using HPLC-MS. Results The selected high bacteria surfactant of BD-5 from oily soil is termed as pseudomonas aeruginosa; on the basis of HPLC-MS test, the high bacteria surfactant of BD-5 is examined as the mixture of 8 kinds of rhamnolipid homologues; it is found that the rhamno-lipid solution has strong emulsion effect on liquid paraffin, diesel and toluene. The variation of the molar solubiliza-tion ratio is thexadecane > naphthalene > phenanthrene > pyrene. Conclusion The above results showed that the BD-5 strain has a greater potential for Soil bioremediation.

  9. Biodegradation of explosives. (Latest citations from the NTIS bibliographic database). Published Search

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-08-01

    The bibliography contains citations concerning the biodegradation of explosives or propellants. Mechanisms and pathways of degradation in soil or water are discussed, as well as regulations governing disposal. Bioremediation of other hazardous materials is discussed in a separate bibliography. (Contains 50-250 citations and includes a subject term index and title list.) (Copyright NERAC, Inc. 1995)

  10. ENHANCED RHIZODEGRADATION OF MUNITIONS EXPLOSIVES TNT AND RDX BY SELECTED PLANT SPECIES

    Science.gov (United States)

    Soil and water contamination by the military munitions explosives TNT (2,4.6-trinitrotoluene)and RDX (1,3,5-hexahydro-1,3,5-trinitrotriazine)and their degradation products have raised many public health and environmental concerns. Phytoremediation techniques could provide a potential cost-effective...

  11. Optimization of protoplast fusion conditions of bacteria able to de-grade bensulfuron-methyl and butachlor%苄嘧磺隆和丁草胺降解菌原生质体融合条件优化

    Institute of Scientific and Technical Information of China (English)

    李春艳; 吴志洋; 冯丽萍; 熊明华; 成小松

    2014-01-01

    In this study, functional fusants with dual functions to simultaneously degrade bensulfuron-methyl and butachlor were constructed through protoplast fusion of Rhodococcus sp. BX2 and Acinetobacter sp.LYC-1. The protoplast fusion condition was optimized and finally the fusion frequency reached to 2.67 × 10-7 under the following condition:40%of PEG4000, 10 min, 35℃, 500μL of freshly-prepared calcium phosphate, pH 7.5. The fusant F1 was obtained with the use of penicillin G and fosfomycin as selection markers and determined to be able to pass more than eight generations stablely on the plates containing bensulfuron-methyl and butachlor. The fusant F1 had respective high degradation rate of 65.35%BSM and 62.41%butachlor in mineral medium supplemented by BSM 100 mg·L-1 and butachlor 100 mg·L-1.%研究以苄嘧磺隆降解菌Rhodococcus sp. BX2与丁草胺降解菌Acinetobacter sp. LYC-1为亲本,优化用于构建可同时降解苄嘧磺隆与丁草胺的融合子的原生质体融合条件。通过单因素试验和正交试验,确定原生质体融合的最佳条件:PEG400040%、35℃、10 min,500μL新生磷酸钙溶液,pH 7.5,此条件下融合频率达到2.67×10-7。以青霉素和磷霉素作为筛选的遗传标记,最终获得在含有上述两种除草剂的无机盐培养基中可稳定继代培养8代以上的融合子F1。该融合子在含有100 mg·mL-1苄嘧磺隆和100 mg·mL-1丁草胺的无机盐培养基中,F1的降解率分别为65.35%和62.41%。

  12. Evaluación de la diversidad de bacterias degradadoras de hidrocarburos aisladas de suelos de las cuencas de los ríos Otún y La Vieja / Evaluation of hydrocarbon degrading bacteria diversity isolated from soils of Otún and La Vieja river basins

    OpenAIRE

    Yanine Suárez, Habib Fernando

    2010-01-01

    Se evaluó el efecto del uso del suelo, sobre la densidad y diversidad de bacterias degradadoras de hidrocarburos (HC). Se seleccionaron los usos: bosque, pastizal y cafetal en la cuenca del río La Vieja (Valle del Cauca y Quindío), y bosque, cebollar y plantación forestal en la cuenca del río Otún (Risaralda) y se realizaron dos eventos de muestreo. La densidad se evaluó mediante la técnica de NMP en medio Bushnell-Hass, suplementado con diesel y usando XTT como indicador de actividad. Las ba...

  13. Lead-free primary explosives

    Science.gov (United States)

    Huynh, My Hang V.

    2010-06-22

    Lead-free primary explosives of the formula (cat).sub.Y[M.sup.II(T).sub.X(H.sub.2O).sub.6-X].sub.Z, where T is 5-nitrotetrazolate, and syntheses thereof are described. Substantially stoichiometric equivalents of the reactants lead to high yields of pure compositions thereby avoiding dangerous purification steps.

  14. Explosion mitigation by water mist

    NARCIS (Netherlands)

    Wal, R. van der; Cargill, S.; Longbottom, A.; Rhijnsburger, M.P.M.; Erkel, A.G. van

    2010-01-01

    The internal explosion of an anti-ship missile or stored ammunition is a potentially catastrophic threat for a navy vessel. These events generally cause heavy blast loading and fragments to perforate the ship structure. As a solution to reduce the blast loading, the compartment can be filled with wa

  15. Turbulent Combustion in SDF Explosions

    Energy Technology Data Exchange (ETDEWEB)

    Kuhl, A L; Bell, J B; Beckner, V E

    2009-11-12

    A heterogeneous continuum model is proposed to describe the dispersion and combustion of an aluminum particle cloud in an explosion. It combines the gas-dynamic conservation laws for the gas phase with a continuum model for the dispersed phase, as formulated by Nigmatulin. Inter-phase mass, momentum and energy exchange are prescribed by phenomenological models. It incorporates a combustion model based on the mass conservation laws for fuel, air and products; source/sink terms are treated in the fast-chemistry limit appropriate for such gasdynamic fields, along with a model for mass transfer from the particle phase to the gas. The model takes into account both the afterburning of the detonation products of the C-4 booster with air, and the combustion of the Al particles with air. The model equations were integrated by high-order Godunov schemes for both the gas and particle phases. Numerical simulations of the explosion fields from 1.5-g Shock-Dispersed-Fuel (SDF) charge in a 6.6 liter calorimeter were used to validate the combustion model. Then the model was applied to 10-kg Al-SDF explosions in a an unconfined height-of-burst explosion. Computed pressure histories are compared with measured waveforms. Differences are caused by physical-chemical kinetic effects of particle combustion which induce ignition delays in the initial reactive blast wave and quenching of reactions at late times. Current simulations give initial insights into such modeling issues.

  16. Episodic Explosions in Interstellar Ices

    CERN Document Server

    Rawlings, J M C; Viti, S; Cecchi-Pestellini, C

    2013-01-01

    We present a model for the formation of large organic molecules in dark clouds. The molecules are produced in the high density gas-phase that exists immediately after ice mantles are explosively sublimated. The explosions are initiated by the catastrophic recombination of trapped atomic hydrogen. We propose that, in molecular clouds, the processes of freeze-out onto ice mantles, accumulation of radicals, explosion and then rapid (three-body) gas-phase chemistry occurs in a cyclic fashion. This can lead to a cumulative molecular enrichment of the interstellar medium. A model of the time-dependent chemistries, based on this hypothesis, shows that significant abundances of large molecular species can be formed, although the complexity of the species is limited by the short expansion timescale in the gas, immediately following mantle explosion. We find that this mechanism may be an important source of smaller organic species, such as methanol and formaldehyde, as well as precursors to bio-molecule formation. Most...

  17. Explosive micro-bubble actuator

    NARCIS (Netherlands)

    Broek, van den D.M.; Elwenspoek, M.

    2008-01-01

    Explosive evaporation occurs when a liquid is exposed to extremely high heat-fluxes. Within a few microseconds a bubble in the form vapour film is generated, followed by rapid growth due to the pressure impulse and finally the bubbles collapse. This effect, which already has proven its use in curren

  18. Explosive micro-bubble actuator

    NARCIS (Netherlands)

    Broek, van den D.M.; Elwenspoek, M.C.

    2007-01-01

    Explosive evaporation occurs when a thin layer of liquid reaches a very high temperature in a very short time. At these temperatures homogeneous nucleation takes place. The nucleated bubbles almost instantly coalesce forming a vapour film followed by rapid growth due to the pressure impulse and fina

  19. Polysaccharide Degradation

    Science.gov (United States)

    Stone, Bruce A.; Svensson, Birte; Collins, Michelle E.; Rastall, Robert A.

    An overview of current and potential enzymes used to degrade polysaccharides is presented. Such depolymerases are comprised of glycoside hydrolases, glycosyl transferases, phosphorylases and lyases, and their classification, active sites and action patterns are discussed. Additionally, the mechanisms that these enzymes use to cleave glycosidic linkages is reviewed as are inhibitors of depolymerase activity; reagents which react with amino acid residues, glycoside derivatives, transition state inhibitors and proteinaceous inhibitors. The characterization of various enzymes of microbial, animal or plant origin has led to their widespread use in the production of important oligosaccharides which can be incorporated into food stuffs. Sources of polysaccharides of particular interest in this chapter are those from plants and include inulin, dextran, xylan and pectin, as their hydrolysis products are purported to be functional foods in the context of gastrointestinal health. An alternative use of degraded polysaccharides is in the treatment of disease. The possibility exists to treat bacterial exopolysaccharide with lyases from bacteriophage to produce oligosaccharides exhibiting bioactive sequences. Although this area is currently in its infancy the knowledge is available to investigate further.

  20. Statistical estimation of loads from gas explosions

    OpenAIRE

    Høiset, Stian

    1998-01-01

    In the design of structures in the offshore and process industries, the possibility of a gas explosion must always be considered. This is usually incorporated by performing explosion simulations. However, estimations based on such calculations introduce uncertainties in the design process. The main uncertainties in explosion simulations are the assumption of the gas cloud,the location of the ignition point and the properties of the explosion simulator itself. In this thesis, we try to investi...

  1. Degradation and induction specificity in actinomycetes that degrade p-nitrophenol.

    OpenAIRE

    1993-01-01

    We have isolated two soil bacteria (identified as Arthrobacter aurescens TW17 and Nocardia sp. strain TW2) capable of degrading p-nitrophenol (PNP) and numerous other phenolic compounds. A. aurescens TW17 contains a large plasmid which correlated with the PNP degradation phenotype. Degradation of PNP by A. aurescens TW17 was induced by preexposure to PNP, 4-nitrocatechol, 3-methyl-4-nitrophenol, or m-nitrophenol, whereas PNP degradation by Nocardia sp. strain TW2 was induced by PNP, 4-nitroca...

  2. Suppression of Chemotactic Explosion by Mixing

    Science.gov (United States)

    Kiselev, Alexander; Xu, Xiaoqian

    2016-11-01

    Chemotaxis plays a crucial role in a variety of processes in biology and ecology. In many instances, processes involving chemical attraction take place in fluids. One of the most studied PDE models of chemotaxis is given by the Keller-Segel equation, which describes a population density of bacteria or mold which is attracted chemically to substance they secrete. Solutions of the Keller-Segel equation can exhibit dramatic collapsing behavior, where density concentrates positive mass in a measure zero region. A natural question is whether the presence of fluid flow can affect singularity formation by mixing the bacteria thus making concentration harder to achieve. In this paper, we consider the parabolic-elliptic Keller-Segel equation in two and three dimensions with an additional advection term modeling ambient fluid flow. We prove that for any initial data, there exist incompressible fluid flows such that the solution to the equation stays globally regular. On the other hand, it is well known that when the fluid flow is absent, there exists initial data leading to finite time blow up. Thus the presence of fluid flow can prevent the singularity formation. We discuss two classes of flows that have the explosion arresting property. Both classes are known as very efficient mixers. The first class are the relaxation enhancing (RE) flows of (Ann Math:643-674, 2008). These flows are stationary. The second class of flows are the Yao-Zlatos near-optimal mixing flows (Mixing and un-mixing by incompressible flows. arXiv:1407.4163, 2014), which are time dependent. The proof is based on the nonlinear version of the relaxation enhancement construction of (Ann Math:643-674, 2008), and on some variations of the global regularity estimate for the Keller-Segel model.

  3. Suppression of Chemotactic Explosion by Mixing

    Science.gov (United States)

    Kiselev, Alexander; Xu, Xiaoqian

    2016-06-01

    Chemotaxis plays a crucial role in a variety of processes in biology and ecology. In many instances, processes involving chemical attraction take place in fluids. One of the most studied PDE models of chemotaxis is given by the Keller-Segel equation, which describes a population density of bacteria or mold which is attracted chemically to substance they secrete. Solutions of the Keller-Segel equation can exhibit dramatic collapsing behavior, where density concentrates positive mass in a measure zero region. A natural question is whether the presence of fluid flow can affect singularity formation by mixing the bacteria thus making concentration harder to achieve. In this paper, we consider the parabolic-elliptic Keller-Segel equation in two and three dimensions with an additional advection term modeling ambient fluid flow. We prove that for any initial data, there exist incompressible fluid flows such that the solution to the equation stays globally regular. On the other hand, it is well known that when the fluid flow is absent, there exists initial data leading to finite time blow up. Thus the presence of fluid flow can prevent the singularity formation. We discuss two classes of flows that have the explosion arresting property. Both classes are known as very efficient mixers. The first class are the relaxation enhancing (RE) flows of (Ann Math:643-674, 2008). These flows are stationary. The second class of flows are the Yao-Zlatos near-optimal mixing flows (Mixing and un-mixing by incompressible flows. arXiv:1407.4163, 2014), which are time dependent. The proof is based on the nonlinear version of the relaxation enhancement construction of (Ann Math:643-674, 2008), and on some variations of the global regularity estimate for the Keller-Segel model.

  4. 30 CFR 77.1301 - Explosives; magazines.

    Science.gov (United States)

    2010-07-01

    ... 30 Mineral Resources 1 2010-07-01 2010-07-01 false Explosives; magazines. 77.1301 Section 77.1301... and Blasting § 77.1301 Explosives; magazines. (a) Detonators and explosives other than blasting agents shall be stored in magazines. (b) Detonators shall not be stored in the same magazine with...

  5. 77 FR 55108 - Explosive Siting Requirements

    Science.gov (United States)

    2012-09-07

    ... where solid propellants, energetic liquids, or other explosives are located to prepare launch vehicles... locations and facilities at a launch site where solid propellants, liquid propellants or other explosives... a launch site where solid propellants, energetic liquids, or other explosives are stored or...

  6. 14 CFR 420.63 - Explosive siting.

    Science.gov (United States)

    2010-01-01

    ... launch site boundary; (2) A listing of the maximum quantities of liquid and solid propellants and other explosives to be located at each explosive hazard facility, including the class and division for each solid explosive and the hazard and compatibility group for each liquid propellant; and (3) A description of...

  7. Anaerobic biodegradation of TCBPA in river sediment and the role of Sulfate Reducing Bacteria (SRB) in TCBPA′s degradation%河道底泥中四氯双酚A的厌氧降解及硫酸盐还原菌对其降解效率的影响

    Institute of Scientific and Technical Information of China (English)

    刘世诚; 李玲玲; 任源; 黄志立; 张丽君

    2014-01-01

    In this research, serum bottle experiments were established to investigate the anaerobic transformation of TCBPA with Lianjiang River sediments ( Guiyu Town, Guangdong Province) , and the changes of sulfate-reducing bacteria ( SRB) in this process. The results showed that the order of anaerobic degradation rates of TCBPA in the sediments under different reducing conditions was methanogenic condition> sulfate-reducing condition> inoculated control. The degradation rate constants of each condition were 0. 0844 d-1 , 0. 0694 d-1 , and 0. 0561 d-1 , while their half-lives were 8.2 d, 10.0 d, and 12.4 d, respectively. The degradation rate of TCBPA was enhanced by the addition of electron donors. Compared with the inoculated control sample, the degradation rate constant increased to 0. 0722 d-1 and the half-life decreased to 9. 6 d. On the other hand, the degradation was inhibited by the addition of butyl phthalate. The degradation rate constant decreased to 0.0491 d-1, and the half-life increased to 14.1 d. Real time PCR experiment proved the positive role of SRB in the process of TCBPA degradation.%本文采用血清瓶实验研究了贵屿镇练江底泥TCBPA的厌氧降解特性以及该过程中硫酸盐还原菌的变化情况.结果表明,在不同还原条件下,TCBPA 降解效率顺序为:产甲烷环境>硫酸盐还原环境>接种控制,对应降解速率常数分别为:0.0844 d-1、0.0694 d-1、0.0561 d-1,半衰期分别为:8.2 d、10.0 d、12.4 d.与接种控制组相比,加入电子供体可加速TCBPA降解,降解速率常数可达0.0722 d-1,半衰期为9.6 d.加入邻苯二甲酸丁酯后,TCBPA降解受到抑制,降解速率常数为0.0491 d-1,半衰期为14.1 d.使用Comparative Ct法进行荧光定量PCR实验,结果表明硫酸盐还原菌在TCBPA降解过程中起到了积极的作用.

  8. Isolated Culture of A Hydrolyzed Polyacrylamide Degrading Bacteria Strain and its Phylogenesis%一株聚丙烯酰胺降解菌株的分离培养及其系统发育分析

    Institute of Scientific and Technical Information of China (English)

    魏利; 马放; 张忠智; 赵立军; 李维国

    2007-01-01

    应用Hungate厌氧技术,从大庆油田聚合物配注站的母液罐中分离到一株水溶性超高分子量聚丙烯酰胺(HPAM)的降解菌株I8,该菌株为短杆状,G-,黑色圆形菌落,最适温度为38℃,最佳pH值为7.8,具有硫酸盐还原功能,产H2S气体,兼性厌氧.研究表明,该菌株能以HPAM为唯一碳源,降解侧链,部分官能团发生改变;浓度为600 mg/L时,20 d菌株生物降解率为63.17%,其溶液粘度下降效果显著.16S rDNA序列与Enterobacter cloacae(ECL251469)的相似性为98%,通过形态、生理生化、G+C含量以及16S rDNA序列鉴定,初步鉴定可能为肠杆菌属的一个新种,暂时命名为Enterobacter HPAM Dcgraded Bacteria I8,I8菌株的分离为HPAM的生物降解提供了新的微生物资源.图4,参14.

  9. Bacteria in crude oil survived autoclaving and stimulated differentially by exogenous bacteria.

    Science.gov (United States)

    Gong, Xiao-Cui; Liu, Ze-Shen; Guo, Peng; Chi, Chang-Qiao; Chen, Jian; Wang, Xing-Biao; Tang, Yue-Qin; Wu, Xiao-Lei; Liu, Chun-Zhong

    2012-01-01

    Autoclaving of crude oil is often used to evaluate the hydrocarbon-degrading abilities of bacteria. This may be potentially useful for bioaugmentation and microbial enhanced oil recovery (MEOR). However, it is not entirely clear if "endogenous" bacteria (e.g., spores) in/on crude oil survive the autoclaving process, or influence subsequent evaluation of the hydrocarbon-degradation abilities of the "exogenous" bacterial strains. To test this, we inoculated autoclaved crude oil medium with six exogenous bacterial strains (three Dietzia strains, two Acinetobacter strains, and one Pseudomonas strain). The survival of the spore-forming Bacillus and Paenibacillus and the non-spore-forming mesophilic Pseudomonas, Dietzia, Alcaligenes, and Microbacterium was detected using a 16S rRNA gene clone library and terminal restriction fragment length polymorphism (T-RFLP) analysis. However, neither bacteria nor bacterial activity was detected in three controls consisting of non-inoculated autoclaved crude oil medium. These results suggest that detection of endogenous bacteria was stimulated by the six inoculated strains. In addition, inoculation with Acinetobacter spp. stimulated detection of Bacillus, while inoculation with Dietzia spp. and Pseudomonas sp. stimulated the detection of more Pseudomonas. In contrast, similar exogenous bacteria stimulated similar endogenous bacteria at the genus level. Based on these results, special emphasis should be applied to evaluate the influence of bacteria capable of surviving autoclaving on the hydrocarbon-degrading abilities of exogenous bacteria, in particular, with regard to bioaugmentation and MEOR. Bioaugmentation and MEOR technologies could then be developed to more accurately direct the growth of specific endogenous bacteria that may then improve the efficiency of treatment or recovery of crude oil. PMID:23028421

  10. Bacteria in crude oil survived autoclaving and stimulated differentially by exogenous bacteria.

    Directory of Open Access Journals (Sweden)

    Xiao-Cui Gong

    Full Text Available Autoclaving of crude oil is often used to evaluate the hydrocarbon-degrading abilities of bacteria. This may be potentially useful for bioaugmentation and microbial enhanced oil recovery (MEOR. However, it is not entirely clear if "endogenous" bacteria (e.g., spores in/on crude oil survive the autoclaving process, or influence subsequent evaluation of the hydrocarbon-degradation abilities of the "exogenous" bacterial strains. To test this, we inoculated autoclaved crude oil medium with six exogenous bacterial strains (three Dietzia strains, two Acinetobacter strains, and one Pseudomonas strain. The survival of the spore-forming Bacillus and Paenibacillus and the non-spore-forming mesophilic Pseudomonas, Dietzia, Alcaligenes, and Microbacterium was detected using a 16S rRNA gene clone library and terminal restriction fragment length polymorphism (T-RFLP analysis. However, neither bacteria nor bacterial activity was detected in three controls consisting of non-inoculated autoclaved crude oil medium. These results suggest that detection of endogenous bacteria was stimulated by the six inoculated strains. In addition, inoculation with Acinetobacter spp. stimulated detection of Bacillus, while inoculation with Dietzia spp. and Pseudomonas sp. stimulated the detection of more Pseudomonas. In contrast, similar exogenous bacteria stimulated similar endogenous bacteria at the genus level. Based on these results, special emphasis should be applied to evaluate the influence of bacteria capable of surviving autoclaving on the hydrocarbon-degrading abilities of exogenous bacteria, in particular, with regard to bioaugmentation and MEOR. Bioaugmentation and MEOR technologies could then be developed to more accurately direct the growth of specific endogenous bacteria that may then improve the efficiency of treatment or recovery of crude oil.

  11. Degradation of 2,4,6-trinitrotoluene by P. aeruginosa and characterization of some metabolites

    Directory of Open Access Journals (Sweden)

    Hatice Aysun Mercimek

    2015-03-01

    Full Text Available Degradation of 2,4,6-trinitrotoluene (TNT, a nitroaromatic explosive found in the soil and ground water, was investigated using Pseudomonas aeruginosa in in vitroexperiments. Biodegradable abilitiy of this bacteria was performed with 50 and 75 mg L−1 TNT concentrations in a defined liquid medium for 96 h time period. Treatment of TNT in supernatant samples taken at 0, 6, 12, 24, 48, 72 and 96 h from agitated vessels was followed by reverse-phase high-performance liquid chromatography (HPLC. In cultures supplemented with 50 and 75 mgL−1 TNT, after 96 h of incubation 46% and 59% reduction were detected respectively. Two metabolites as degradation intermediates with nitrite release into the medium, 2,4-dinitrotoluene (2,4-DNT and 4-aminodinitrotoluene (4-ADNT, were elucidated by thin layer chromatography (TLC and gas chromatography-mass spectrometry (GC-MS. These findings clearly indicate that Pseudomonas aeruginosa can be used in bioremediation of TNT contaminated sites.

  12. Safe, in situ methodologies for the destruction of triacetone triperoxide and other explosive peroxides

    Science.gov (United States)

    Clausen, III, Christian (Inventor); Geiger, Cherie L. (Inventor); Sigman, Michael (Inventor); Fidler, Rebecca (Inventor)

    2011-01-01

    Triacetone triperoxide (TATP) and other explosives of the peroxide family are safely degraded in situ. Nano and micron size metal particles in an elemental state include pure iron and magnesium or iron and magnesium particles that are mechanically alloyed with palladium and nickel. The metal particles are used in both the elemental state and in emulsions that are made from water, a hydrophobic solvent, such as corn oil, and a food-grade nonionic surfactant. The neat metals and emulsified zero valent metals (EZVM) safely degrade TATP with the major degradation product being acetone. The EZVM system absorbs and dissolves the TATP into the emulsion droplets where TATP degradation occurs. EZVM systems are ideal for degrading dry TATP crystals that may be present on a carpet or door entrance. Both the neat metal system and the emulsion system (EZVM) degrade TATP in an aqueous slurry.

  13. Screen and Identification of Alkane Degrading Bacteria and Characteristics of a Predominant Strain%烷烃降解茵的筛选、鉴定及优势菌株的降解特性

    Institute of Scientific and Technical Information of China (English)

    郭娜; 李志敏; 叶勤

    2011-01-01

    以正庚烷为唯一碳源,从长期受到石油污染的土壤中筛选获得可利用正庚烷的微生物14株.通过形态观察和16S rDNA序列比对,鉴定G2、G9、G14为红球菌属,G3、G27为人苍白杆菌属,G4、G7为芽孢杆菌属,G5、G10、G15、G25为节杆菌属,G16为缺陷短波单胞菌,G17、G22为嗜麦芽寡养单胞菌属.通过考察其降解烷烃的能力,确定Rhodococcus sp.G2为烷烃降解优势菌株.该菌株可代谢庚烷获得最大菌体浓度D600nm=7.51.同时该菌对不同碳链长度的烷烃,如十二烷、十六烷、煤油和二甲苯均具有较强的降解能力,以十二烷为碳源的最大比生长速率为0.37 h-1,最高菌体浓度为D600nm= 12.00,在正十六烷中生长,最大比生长速率为0.23 h-1,在煤油中生长,最大比生长速率为0.14 h-l,在以二甲苯为唯一碳源时,D600nm也可达到1.00左右.研究表明该菌株对于石油污染土壤的生物修复有很大的应用前景.%Using n-heptane as sole carbon source, 14 strains were enriched and isolated from oil-polluted soil, and their potential in bioremediation was investigated. The results of 16S rDNA sequence analysis and morphological observation showed that G2, G9 and G14 belonged to the genus Rhodococcus; G3 and G27 belonged to Ochrobactrum; G4 and G7 belonged to Bacillus; G5, G10, G15, and G25 belonged to Arthrobacter; G16 belonged to Brevundimonas diminuta; and G17 and G22 belonged to Stenotrophomonas. Among them, Rhodococcus sp. G2 was one of the predominant alkane-degrading strains, which could obtain the maximum D600nm 7.51 with n-heptane as sole carbon source. In addition, the maximum specific growth rate (μmax) was 0.37 h1 and D600nm was 12.00 in n-dodecane, whereas the μmax is 0.23 h-1 in n-hexadecane and 0.14 h"1 in kerosene, respectively. G2 even could utilize xylene to achieve D600nm1.00. The results show that G2 can degrade alkane with different carbon chain length including n-heptane, n-dodecane, n

  14. Numerical computation algorithm of explosion equations and thermodynamics parameters of mine explosives

    Institute of Scientific and Technical Information of China (English)

    李守巨; 刘迎曦; 何翔; 周圆π

    2001-01-01

    A new numerical algorithm is presented to simulate the explosion reaction process of mine explosives based on the equation of state, the equation of mass conservation and thermodynamics balance equation of explosion products. With the affection of reversible reaction of explosion products to explosion reaction equations and thermodynamics parameters considered, the computer program has been developed. The computation values show that computer simulation results are identical with the testinq ones.

  15. Numerical computation algorithm of explosion equations and thermodynamics parameters of mine explosives

    Institute of Scientific and Technical Information of China (English)

    LI Shou-ju; LIU Ying-xi; HE Xiang; ZHOU Y uan-pai

    2001-01-01

    A new numerical algorithm is presented to simulate the explosion reacti on process of mine explosives based on the equation of state, the equation of ma ss conservation and thermodynamics balance equation of explosion products. With the affection of reversible reaction of explosion products to explosion reaction equations and thermodynamics parameters considered, the computer program has be en developed. The computation values show that computer simulation results are i dentical with the testing ones.

  16. Development and validation of an isotope dilution ultra-high performance liquid chromatography tandem mass spectrometry method for the reliable quantification of 1,3,5-Triamino-2,4,6-trinitrobenzene (TATB) and 14 other explosives and their degradation products in environmental water samples.

    Science.gov (United States)

    Schramm, Sébastien; Léonço, Daniel; Hubert, Cécile; Tabet, Jean-Claude; Bridoux, Maxime

    2015-10-01

    A comprehensive method for the determination and characterization of 15 common explosive compounds in water samples by ultra-high pressure liquid chromatography-atmospheric pressure chemical ionization-tandem mass spectrometry (APCI-MS/MS) is presented. The method allows the determination of 10 nitroaromatics, two nitroamines and three nitrate ester compounds. Among these, 1,3,5-Triamino-2,4,6-trinitrobenzene (TATB) was quantified and detected for the first time in our knowledge at trace levels (0.2 µg/L). Furthermore, the collision induced dissociation (CID) mass spectrum of TATB is discussed and a fragmentation mechanism is proposed. The signal for each explosive was normalized by isotopically-enriched congeners used as internal standards. The limits of detection (LOD) reached 20 ng/L, depending on the type of energetic molecule, which are adequate for water samples and the linearity was verified from 1.4 to 2 orders of magnitude. The sensitivity of the UHPLC-APCI-MS/MS approach allows direct injection of aqueous samples without preceding extraction for concentration. Besides, the method displays a good reliability with low signal suppression in various matrices such as spring water, mineral water, acidified water or ground water. The effectiveness of the method is demonstrated by the analysis of underground water samples containing traces of explosives from test fields in France. PMID:26078159

  17. Damage Effects of Shelled Explosive Explosion in Concrete

    Directory of Open Access Journals (Sweden)

    Liu Yan

    2010-10-01

    Full Text Available The damage of concrete subjected to explosion loading is an important issue in defense engineering. The damage degree of concrete is related to many factors, such as the type of explosive charge, the depth of burial and the parameters of concrete. In this paper, three factors are considered for experiments of shelled explosives in concrete targets, which are the filling coefficient, length-to-diameter ratio and the depth of burial. The filling coefficient is from 0.1 to 1 by changing thickness of shell, and length-to-diameter ratio is from 2.5 to 10. The unconfined compressive strength of concrete target for test is 35MPa. The experimental results showed that the sizes of craters of concretes are varied as the filling coefficient, length-to-diameter ratio and the depth of burial. The optimal values of filling coefficient, length-to-diameter ratio and the depth of burial of shelled charges were obtained to get largest damage regions of concrete targets. This work provides a base for evaluating the damage of concrete and designing the penetrating warhead.Defence Science Journal, 2010, 60(6, pp.672-677, DOI:http://dx.doi.org/10.14429/dsj.60.434

  18. Remediating explosive-contaminated groundwater by in situ redox manipulation (ISRM) of aquifer sediments.

    Science.gov (United States)

    Boparai, H K; Comfort, S D; Shea, P J; Szecsody, J E

    2008-03-01

    In situ chemical reduction of clays and iron oxides in subsurface environments is an emerging technology for treatment of contaminated groundwater. Our objective was to determine the efficacy of dithionite-reduced sediments from the perched Pantex Aquifer (Amarillo, TX) to abiotically degrade the explosives RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine), HMX (octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine), and TNT (2,4,6-trinitrotoluene). The effects of dithionite/buffer concentrations, sediments-solution ratios, and the contribution of Fe(II) were evaluated in batch experiments. Results showed that reduced Pantex sediments were highly effective in degrading all three high explosives. Degradation rates increased with increasing dithionite/buffer concentrations and soil to solution ratios (1:80-1:10 w/v). When Fe(II) was partially removed from the reduced sediments by washing (citrate-bicarbonate buffer), RDX degradation slowed, but degradation efficiency could be restored by adding Fe(II) back to the treated sediments and maintaining an alkaline pH. These data support in situ redox manipulation as a remedial option for treating explosive-contaminated groundwater at the Pantex site. PMID:18086486

  19. Hazards of explosives dusts: Particle size effects

    Energy Technology Data Exchange (ETDEWEB)

    Cashdollar, K L; Hertzberg, M; Green, G M

    1992-02-01

    At the request of the Department of Energy, the Bureau of Mines has investigated the hazards of military explosives dispersed as dust clouds in a 20-L test chamber. In this report, the effect of particle size for HMX, HNS, RDX, TATB, and TNT explosives dusts is studied in detail. The explosibility data for these dusts are also compared to those for pure fuel dusts. The data show that all of the sizes of the explosives dusts that were studied were capable of sustaining explosions as dust clouds dispersed in air. The finest sizes (<10 [mu]m) of explosives dusts were less reactive than the intermediate sizes (20 to 60 [mu]m); this is opposite to the particle size effect observed previously for the pure fuel dusts. At the largest sizes studied, the explosives dusts become somewhat less reactive as dispersed dust clouds. The six sizes of the HMX dust were also studied as dust clouds dispersed in nitrogen.

  20. Protein degradation in bovine milk caused by Streptococcus agalactiae.

    Science.gov (United States)

    Åkerstedt, Maria; Wredle, Ewa; Lam, Vo; Johansson, Monika

    2012-08-01

    Streptococcus (Str.) agalactiae is a contagious mastitis bacterium, often associated with cases of subclinical mastitis. Different mastitis bacteria have been evaluated previously from a diagnostic point of view, but there is a lack of knowledge concerning their effect on milk composition. Protein composition is important in achieving optimal yield and texture when milk is processed to fermented products, such as cheese and yoghurt, and is thus of great economic value. The aim of this in vitro study was to evaluate protein degradation mainly caused by exogenous proteases originating from naturally occurring Str. agalactiae. The samples were incubated at 37°C to imitate degradation caused by the bacteria in the udder. Protein degradation caused by different strains of Str. agalactiae was also investigated. Protein degradation was observed to occur when Str. agalactiae was added to milk, but there were variations between strains of the bacteria. Caseins, the most economically important proteins in milk, were degraded up to 75% in milk inoculated with Str. agalactiae in relation to sterile ultra-high temperature (UHT) milk, used as control milk. The major whey proteins, α-lactalbumin and β-lactoglobulin, were degraded up to 21% in relation to the sterile control milk. These results suggest that different mastitis bacteria but also different strains of mastitis bacteria should be evaluated from a milk quality perspective to gain knowledge about their ability to degrade the economically important proteins in milk. PMID:22850579

  1. Screening and identification of bacteria for organic pollutant degradation in sediment of marine cage fish farming area%网箱养殖沉积环境中有机污染物降解菌的筛选与鉴定

    Institute of Scientific and Technical Information of China (English)

    孟霞; 黄洪辉; 贾晓平; 古小莉

    2011-01-01

    This paper is aimed to present our study on the screening and identification of effective organic pollutant degrading bacteria in the sediment of a heavily organic polluted marine cage fish farm. As a matter of fact, the marine cage fish farming first began in Guangdong coastal waters of China at the end of 1970s, and it has grown dramatically during the last three decades and become one of the important marine aquaculture industries in China. However, marine cage fish farming generates high pollution loadings especially in the sea bottom, where the high sediment oxygen demand, anoxic sediments, production of toxic gases and decrease in benthic diversity may result. For bioremediation of polluted sediment environment in marine cage farm, six bacteria strains were isolated after 2 months of selective enrichment incubation under intermittent aeration condition from the sediment in the marine cage fish farm in Dapeng Ao Cove,east coast of Shenzhen City. Through the ability test for degradation to the liquid wild trash fish culture medium, four bacteria strains which were capable of degrading the organic trash fish pollutant rapidly and efficiently, were obtained. The 7 d incubation of biochemical oxygen demand (BOD7) were between 1 040- 1 140 mg/l, the 5 d incubation for the average CODMn removing rate ( 1 - COD5/COD0 ) were between 13.58% -46.9% and the biochemical degradation rate (BOD5/COD0) were between 81.56% -89.43%. The 5 d incubation for average CODMn degradation rate of pair-strain mixed bacteria was64.91% (6.51%, which was 2 times higher than that 30.60 (13.63% of single strain; and BOD5/COD0 were between 86.10% -89.13%. There were no obvious differences if compared with those of single strain. Sequence analysis based on partial 16S rDNA and performed by BLASTN and FASTA showed that 2 strains belonged to genus of Staphylococcus sp. and Halornonas sp. The other 2 strains maybe belonged to genus of Halomonas sp. and Pseudomonas sp

  2. Underwater explosions and cavitation phenomena

    International Nuclear Information System (INIS)

    Some aspects of underwater explosions and cavitation phenomena have been studied by using a thermodynamic equation of state for water and a one-dimensional Lagrangian hydrocode. The study showed that surface cavitation is caused by the main blast wave and a bubble pulse from rebound of a release wave moving toward the center of the exploding bubble. Gravity has little effect on the surface cavitation. In nuclear explosions the bubble is bounded by a two-phase region rather than a gas-water interface. The two-phase region cavitates as the bubble expands, changing the optical absorption coefficient by many orders of magnitude and significantly affecting the optical signature. In assessing cavitation damage, it is concluded that a water jet of unstable bubble collapse erodes solid walls. The study leads to suggestions for future research

  3. RANCHERO explosive pulsed power experiments

    CERN Document Server

    Goforth, J H; Armijo, E V; Atchison, W L; Bartos, Yu; Clark, D A; Day, R D; Deninger, W J; Faehl, R J; Fowler, C M; García, F P; García, O F; Herrera, D H; Herrera, T J; Keinigs, R K; King, J C; Lindemuth, I R; López, E; Martínez, E C; Martínez, D; McGuire, J A; Morgan, D; Oona, H; Oro, D M; Parker, J V; Randolph, R B; Reinovsky, R E; Rodríguez, G; Stokes, J L; Sena, F C; Tabaka, L J; Tasker, D G; Taylor, A J; Torres, D T; Anderson, H D; Broste, W B; Johnson, J B; Kirbie, H C

    1999-01-01

    The authors are developing the RANCHERO high explosive pulsed power (HEPP) system to power cylindrically imploding solid-density liners for hydrodynamics experiments. Their near-term goal is to conduct experiments in the regime pertinent to the Atlas capacitor bank. That is, they will attempt to implode liners of ~50 g mass at velocities approaching 15 km/sec. The basic building block of the HEPP system is a coaxial generator with a 304.8 mm diameter stator, and an initial armature diameter of 152 mm. The armature is expanded by a high explosive (HE) charge detonated simultaneously along its axis. The authors have reported a variety of experiments conducted with generator modules 43 cm long and have presented an initial design for hydrodynamic liner experiments. In this paper, they give a synopsis of their first system test, and a status report on the development of a generator module that is 1.4 m long. (6 refs).

  4. Waves from an underground explosion

    Science.gov (United States)

    Krymskii, A. V.; Lyakhov, G. M.

    1984-05-01

    The problem of the propagation of a spherical detonation wave in water-saturated soil was solved in [1, 2] by using a model of a liquid porous multicomponent medium with bulk viscosity. Experiments show that soils which are not water saturated are solid porous multicomponent media having a viscosity, nonlinear bulk compression limit diagrams, and irreversible deformations. Taking account of these properties, and using the model in [2], we have solved the problem of the propagation of a spherical detonation wave from an underground explosion. The solution was obtained by computer, using the finite difference method [3]. The basic wave parameters were determined at various distances from the site of the explosion. The values obtained are in good agreement with experiment. Models of soils as viscous media which take account of the dependence of deformations on the rate of loading were proposed in [4 7] also. In [8] a model was proposed corresponding to a liquid multicomponent medium with a variable viscosity.

  5. EXPLOSION RISK ASSESSMENTS FOR FACILITIES

    Directory of Open Access Journals (Sweden)

    Martin KULICH

    2015-12-01

    Full Text Available In the first part of the article we discuss the possibilities and analytical tools that can deal with the classification of space into zones with danger of explosion for devices with the presence of compressed flammable gases. Then we continue with specifications of possibilities for practical utilization linked to variables such as ventilation degree, hypothetical volume etc., including the examples. At the end we also give a brief overview of software for modelling gas leak, including examples of an outcome.

  6. Explosive Formulation Code Naming SOP

    Energy Technology Data Exchange (ETDEWEB)

    Martz, H. E. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2014-09-19

    The purpose of this SOP is to provide a procedure for giving individual HME formulations code names. A code name for an individual HME formulation consists of an explosive family code, given by the classified guide, followed by a dash, -, and a number. If the formulation requires preparation such as packing or aging, these add additional groups of symbols to the X-ray specimen name.

  7. Causes of the Cambrian Explosion.

    OpenAIRE

    Smith, M P; Harper, D.A.T.

    2013-01-01

    In the last decade, at least thirty individual hypotheses have been invoked to explain the Cambrian Explosion, ranging from starbursts in the Milky Way to intrinsic genomic reorganization and developmental patterning. It has been noted (1) that recent hypotheses fall into three categories: a) developmental/genetic, b) ecologic and c) abiotic environmental, with geochemical hypotheses forming an abundant and distinctive subset of the last. With a few notable exceptions, a significant majority ...

  8. Nuclear Explosions 1945-1998

    International Nuclear Information System (INIS)

    The main part of this report is a list of nuclear explosions conducted by the United States, the Soviet Union, the United Kingdom, France, China, India and Pakistan in 1945-98. The list includes all known nuclear test explosions and is compiled from a variety of sources including officially published information from the USA, Russia and France. The details given for each explosion (date, origin time, location, yield, type, etc.) are often compiled from more than one source because the individual sources do not give complete information. The report includes a short background to nuclear testing and provides brief information on the Comprehensive Nuclear-Test-Ban Treaty and the verification regime now being established to verify compliance with the treaty. It also summarizes nuclear testing country by country. The list should be used with some caution because its compilation from a variety of sources means that some of the data could be incorrect. This report is the result of cooperation between the Defence Research Establishment (FOA) and the Stockholm International Peace Research Institute (SIPRI)

  9. Nuclear Explosions 1945-1998

    Energy Technology Data Exchange (ETDEWEB)

    Bergkvist, Nils-Olov; Ferm, Ragnhild

    2000-07-01

    The main part of this report is a list of nuclear explosions conducted by the United States, the Soviet Union, the United Kingdom, France, China, India and Pakistan in 1945-98. The list includes all known nuclear test explosions and is compiled from a variety of sources including officially published information from the USA, Russia and France. The details given for each explosion (date, origin time, location, yield, type, etc.) are often compiled from more than one source because the individual sources do not give complete information. The report includes a short background to nuclear testing and provides brief information on the Comprehensive Nuclear-Test-Ban Treaty and the verification regime now being established to verify compliance with the treaty. It also summarizes nuclear testing country by country. The list should be used with some caution because its compilation from a variety of sources means that some of the data could be incorrect. This report is the result of cooperation between the Defence Research Establishment (FOA) and the Stockholm International Peace Research Institute (SIPRI)

  10. Thermodynamic States in Explosion Fields

    Energy Technology Data Exchange (ETDEWEB)

    Kuhl, A L

    2010-03-12

    We investigate the thermodynamic states occurring in explosion fields from condensed explosive charges. These states are often modeled with a Jones-Wilkins-Lee (JWL) function. However, the JWL function is not a Fundamental Equation of Thermodynamics, and therefore cannot give a complete specification of such states. We use the Cheetah code of Fried to study the loci of states of the expanded detonation products gases from C-4 charges, and their combustion products air. In the Le Chatelier Plane of specific-internal-energy versus temperature, these loci are fit with a Quadratic Model function u(T), which has been shown to be valid for T < 3,000 K and p < 1k-bar. This model is used to derive a Fundamental Equation u(v,s) for C-4. Given u(v,s), one can use Maxwell's Relations to derive all other thermodynamic functions, such as temperature: T(v,s), pressure: p(v,s), enthalpy: h(v,s), Gibbs free energy: g(v,s) and Helmholz free energy: f(v,s); these loci are displayed in figures for C-4. Such complete equations of state are needed for numerical simulations of blast waves from explosive charges, and their reflections from surfaces.

  11. Assessment of steam explosion impact on KNGR plant

    Energy Technology Data Exchange (ETDEWEB)

    Hwang, Moon Kyu; Park, Soo Yong; Park, Ik Kyu

    1999-03-01

    In present day light water reactors, if complete and prolonged failure of normal and emergency coolant flow occurs, fission product decay heat could cause melting of the reactor fuel. If the molten fuel mass accumulates it may relocate into reactor lower plenum and if the lower head fails it may eventually be brought into the reactor cavity. In such course of core melt relocation, the opportunity for fuel-coolant interactions (FCI) arises as the core melt relocates into water pool in reactor vessel as well as in reactor cavity and also, as a consequence of implementing accident management strategies involving water addition to a degraded or molten core. This report presents the methodologies and their results for assessment of steam explosion impact on KNGR plant integrity. Both in-vessel and ex-vessel phenomena are addressed. For in-vessel steam explosion, TRACER-II code is used for assessment of pressure load, while bounding calculations are applied for ex-vessel analysis. Analysis shows that the integrity of reactor pressure vessel lower head is preserved during the in-vessel event and the probability that the containment integrity is challenged is very low, even when ex-vessel steam explosion is allowed due to reactor vessel failure. (Author). 15 refs., 2 tabs., 4 figs.

  12. Service life evaluation of rigid explosive transfer lines

    Science.gov (United States)

    Bement, L. J.; Kayser, E. G.; Schimmel, M. L.

    1983-01-01

    This paper describes a joint Army/NASA-sponsored research program on the service life evaluation of rigid explosive transfer lines. These transfer lines are used to initiate emergency crew escape functions on a wide variety of military and NASA aircraft. The purpose of this program was to determine quantitatively the effects of service, age, and degradation on rigid explosive transfer lines to allow responsible, conservative, service life determination. More than 800 transfer lines were removed from the U.S. Army AH-1G and AH-1S, the U.S. Air Force B-1 and F-111, and the U.S. Navy F-14 aircraft for testing. The results indicated that the lines were not adversely affected by age, service, or a repeat of the thermal qualification tests on full-service lines. Extension of the service life of rigid explosive transfer lines should be considered, since considerable cost savings could be realized with no measurable decrease in system reliability.

  13. Determination of Nanogram Microparticles from Explosives after Real Open-Air Explosions by Confocal Raman Microscopy.

    Science.gov (United States)

    Zapata, Félix; García-Ruiz, Carmen

    2016-07-01

    Explosives are increasingly being used for terrorist attacks to cause devastating explosions. The detection of their postblast residues after an explosion is a high challenge, which has been barely investigated, particularly using spectroscopic techniques. In this research, a novel methodology using confocal Raman microscopy has been developed for the analysis of postblast residues from 10 open-air explosions caused by 10 different explosives (TNT, RDX, PETN, TATP, HMTD, dynamite, black powder, ANFO, chloratite, and ammonal) commonly used in improvised explosive devices. The methodology for the determination of postblast particles from explosives consisted of examining the samples surfaces with both the naked eye, first, and microscopically (10× and 50×), immediately afterward; and finally, analyzing the selected residues by confocal Raman spectroscopy in order to identify the postblast particles from explosives. Interestingly, confocal Raman microscopy has demonstrated to be highly suitable to rapidly, selectively, and noninvasively analyze postblast microscopic particles from explosives up to the nanogram range.

  14. Bacteria isolated from amoebae/bacteria consortium

    Science.gov (United States)

    Tyndall, Richard L.

    1995-01-01

    New protozoan derived microbial consortia and method for their isolation are provided. Consortia and bacteria isolated therefrom are useful for treating wastes such as trichloroethylene and trinitrotoluene. Consortia, bacteria isolated therefrom, and dispersants isolated therefrom are useful for dispersing hydrocarbons such as oil, creosote, wax, and grease.

  15. Soil bacteria for remediation of polluted soils

    Energy Technology Data Exchange (ETDEWEB)

    Springael, D.; Bastiaens, L.; Carpels, M.; Mergaey, M.; Diels, L.

    1996-09-18

    Soil bacteria, specifically adapted to contaminated soils, may be used for the remediation of polluted soils. The Flemish research institute VITO has established a collection of bacteria, which were isolated from contaminated areas. This collection includes microbacteria degrading mineral oils (Pseudomonas sp., Acinetobacter sp. and others), microbacteria degrading polycyclic aromatic hydrocarbons (genera Sphingomonas and Mycobacterium), microbacteria degrading polychlorobiphenyls (genus Ralstonia and strains related to beta-Proteobacteria), and metal resistant bacteria with plasmid borne resistances to Cd, Zn, Ni, Co, Cu, Hg, and Cr. Bench-scale reactors were developed to investigate the industrial feasibility of bioremediation. Batch Stirred Tank Reactors were used to evaluate the efficiency of oil degraders. Soils, contaminated with non-ferrous metals, were treated using a Bacterial Metal Slurry Reactor. It was found that the reduction of the Cd concentration may vary strongly from sample to sample: reduction factors vary from 95 to 50%. Is was shown that Cd contained in metallic sinter and biologically unavailable Cd could not be removed.

  16. Isolation and Identification of Nitrite- oxidizing Bacteria

    Institute of Scientific and Technical Information of China (English)

    Yulong; CHEN; Wenyong; TAN; Da; YANG

    2015-01-01

    In order to select the strain that can degrade nitrite,we use the screening plate with nitrite as the sole nitrogen source to select the strain with ability to degrade nitrite,and get a strain with nitrite degrading capacity from the silt of shrimp farming pond in Hepu City,Guangxi Zhuang Autonomous Region. By identifying the strain from colony morphology,physiological and biochemical characteristics and 16 S r RNA sequence,we finally get a bacteria strain that can degrade nitrite,and this strain can grow well on the culture medium with nitrite concentration of 2 g / L. Based on morphology,nitrogen source requirements and evolutionary tree analysis of the above 16 S r RNA sequence,it is found that this strain belongs to Pannonibacter phragmitetus. According to the screening location,it is named HPPP007 strain.

  17. 培养法和免培养法联合检测油藏环境烃降解菌和产甲烷菌群多样性%Culture-dependent and culture-independent characterization of alkane-degrading bacteria and methanogens consortium diversity associated with petroleum reservoir

    Institute of Scientific and Technical Information of China (English)

    李辉; 林匡飞; 牟伯中; 张卫; 顾继光; 李洋洋

    2011-01-01

    The alkane-degrading bacterium and methanogenic were the important functional populations in oil reservoirs and their diversities were investigated by FISH and DGGE, respectively. The DGGE profiles showed great difference between the alkB genes in samples. And the major bands detected in injection wells were obviously more than them in production wells. The FISH results indicated that the quantity of archaea was much more than bacteria in the samples and they had close spatial distribution in situ. The results indicated that alkane-degrading bacterium and methanogenic populations were diverse in oil reservoirs and formed compact aggregates in situ. The incubation of Shengli oilfield production water degraded more than 50% residual oil during 130 d culture, with the production rate of methane reaching up to 1.57x10-2 mmol/(L'd). Molecular analysis of the functional populations of microbial community in oilfield will provide the information for better application of microbial enhanced oil recovery.%烃降解菌和产甲烷菌是油藏环境微生物生态系统中重要的功能菌群,采用DGGE和FISH方法分析了不同油藏样品中两类菌群的多样性和产甲烷活性.DGGE结果表明,不同水样的alkB基因多样性相差较大,而且注水井条带明显多于采油井.FISH结果表明,油藏水样中产甲烷菌含量明显高于烃降解菌,且两者空间分布的位置较近;说明油藏环境中烃降解菌和产甲烷菌结成一定的相互关系.富集培养表明,胜利油田产出液接种物培养130 d后,石油烃降解率达到50%以上,产甲烷的最大速率达到1.57×10-2mmol/(L·d).利用分子生物学方法分析油藏环境功能菌群的多样性,可以为开展微生物采油技术的应用提供有用信息.

  18. Data base of chemical explosions in Kazakhstan

    Energy Technology Data Exchange (ETDEWEB)

    Demin, V.N. [National Nuclear Center of Republic of Kazakhstan Institute of Geophysical Researches (Kazakhstan); Malahova, M.N. [National Nuclear Center of Republic of Kazakhstan Institute of Geophysical Researches (Kazakhstan); Martysevich, P.N. [National Nuclear Center of Republic of Kazakhstan Institute of Geophysical Researches (Kazakhstan); Mihaylova, N.N. [National Nuclear Center of Republic of Kazakhstan Institute of Geophysical Researches (Kazakhstan); Nurmagambetov, A. [National Nuclear Center of Republic of Kazakhstan Institute of Geophysical Researches (Kazakhstan); Kopnichev, Yu.F. D. [National Nuclear Center of Republic of Kazakhstan Institute of Geophysical Researches (Kazakhstan); Edomin, V.I. [National Nuclear Center of Republic of Kazakhstan Institute of Geophysical Researches (Kazakhstan)

    1996-12-01

    Within the bounds of this report, the following works were done: (1) Information about explosion quarries, located in Southern, Eastern and Northern Kasakstan was summarized. (2) The general information about seismicity of areas of location of explosion quarries was adduced. (3) The system of observation and seismic apparatus, recording the local earthquakes and quarry explosions at the territory of Kazakstan were described. (4) Data base of quarry explosions, that were carried out in Southern, Eastern and Northern Kazakstan during 1995 and first half of 1996 year was adduced. (5) Upon the data of registration of explosions in Southern Kazakstan the correlative dependences between power class of explosions and summary weight of charge were constructed. (6) Seismic records of quarry explosions were adduced. It is necessary to note, that the collection of data about quarry explosions in Kazakstan in present time is very difficult task. Organizations, that makes these explosions, are always suffering reorganizations and sometimes it is actually impossible to receive all the necessary information. Some quarries are situated in remote, almost inaccessible regions, and within the bounds of supplier financing not the every quarry was in success to visit. So the present data base upon the chemical explosions for 1995 is not full and in further it`s expansion is possible.

  19. Explosion risks linked to red oils in the spent fuels reprocessing plants

    International Nuclear Information System (INIS)

    This paper presents the risk of explosion associated with reactions between tributyl phosphate (TBP) and its degradation products and nitrates from nitric acid or associated with heavy metals (uranium and plutonium); These reactions may lead to the formation of unstable compounds known as 'red oils'. The feedback explosions linked to the formation of such compounds occurring in spent fuel reprocessing plants round the world, is briefly discussed. The main measures to control these risks, implemented in French factories concerned are also presented. (N.C.)

  20. Bleach vs. Bacteria

    Science.gov (United States)

    ... Articles | Inside Life Science Home Page Bleach vs. Bacteria By Sharon Reynolds Posted April 2, 2014 Your ... hypochlorous acid to help kill invading microbes, including bacteria. Researchers funded by the National Institutes of Health ...

  1. Advanced Oxidation Degradation of Diclofenac

    International Nuclear Information System (INIS)

    Advanced oxidation/reduction processes (AO/RPs), utilize free radical reactions to directly degrade chemical contaminants as an alternative to traditional water treatment. This study reports the absolute rate constants for reaction of diclofenac sodium and the model compound (2, 6-dichloraniline) with the two major AO/RP radicals; the hydroxyl radical (•OH) and hydrated electron (e-aq). The bimolecular reaction rate constants (M-1 s-1) for diclofenac for •OH was (9.29 ± 0.11) x 109, and, for e- aq was (1.53 ± 0.03) x109. Preliminary degradation mechanisms are suggested based on product analysis using 60Co γ-irradiation and LC-MS for reaction by-product identification. The toxicity of products was evaluated using the Vibrio fischeri luminescent bacteria method. (author)

  2. Thermal explosion in oscillating ambient conditions

    Science.gov (United States)

    Novozhilov, Vasily

    2016-07-01

    Thermal explosion problem for a medium with oscillating ambient temperature at its boundaries is considered. This is a new problem in thermal explosion theory, not previously considered in a distributed system formulation, but important for combustion and fire science. It describes autoignition of wide range of fires (such as but not limited to piles of biosolids and other organic matter; storages of munitions, explosives, propellants) subjected to temperature variations, such as seasonal or day/night variation. The problem is considered in formulation adopted in classical studies of thermal explosion. Critical conditions are determined by frequency and amplitude of ambient temperature oscillations, as well as by a number of other parameters. Effects of all the parameters on critical conditions are quantified. Results are presented for the case of planar symmetry. Development of thermal explosion in time is also considered, and a new type of unsteady thermal explosion development is discovered where thermal runaway occurs after several periods of temperature oscillations within the medium.

  3. Explosives Detection: Exploitation of the Physical Signatures

    Science.gov (United States)

    Atkinson, David

    2010-10-01

    Explosives based terrorism is an ongoing threat that is evolving with respect to implementation, configuration and materials used. There are a variety of devices designed to detect explosive devices, however, each technology has limitations and operational constraints. A full understanding of the signatures available for detection coupled with the array of detection choices can be used to develop a conceptual model of an explosives screening operation. Physics based sensors provide a robust approach to explosives detection, typically through the identification of anomalies, and are currently used for screening in airports around the world. The next generation of detectors for explosives detection will need to be more sensitive and selective, as well as integrate seamlessly with devices focused on chemical signatures. An appreciation for the details of the physical signature exploitation in cluttered environments with time, space, and privacy constraints is necessary for effective explosives screening of people, luggage, cargo, and vehicles.

  4. APPLICATION OF EXPLOSIVE ENERGY IN METALWORKING

    Directory of Open Access Journals (Sweden)

    Vječislav Bohanek

    2013-07-01

    Full Text Available When an explosive charge is detonate, considerable amount of energy in a very short period of time is released. Energy, released in this way, is used for performing various kinds of useful work. Most explosives are consumed to obtain mineral raw materials in the mining industry and for various excavations in the construction industry. One of the specific areas of application explosive energy is an area of explosive metalworking. Using energy of explosive metal is welded, formed, cuts, harden etc. This paper presents an overview of the existing explosive metalworking methods. Methods are explained and comparative advantages in comparison to conventional metalworking methods are given (the paper is published in Croatian.

  5. New Dark Matter Detector using Nanoscale Explosives

    OpenAIRE

    Lopez, Alejandro; Drukier, Andrzej; Freese, Katherine; Kurdak, Cagliyan; Tarle, Gregory

    2014-01-01

    We present nanoscale explosives as a novel type of dark matter detector and study the ignition properties. When a Weakly Interacting Massive Particle WIMP from the Galactic Halo elastically scatters off of a nucleus in the detector, the small amount of energy deposited can trigger an explosion. For specificity, this paper focuses on a type of two-component explosive known as a nanothermite, consisting of a metal and an oxide in close proximity. When the two components interact they undergo a ...

  6. Analysis of TROI-13 Steam Explosion Experiment

    OpenAIRE

    Mitja Uršič; Matjaž Leskovar

    2008-01-01

    The prediction of steam explosion inducing loads in nuclear power plants must be based on results of experimental research programmes and on simulations using validated fuel-coolant interaction codes. In this work, the TROI-13 steam explosion experiment was analysed with the fuel-coolant interaction MC3D computer code. The TROI-13 experiment is one of several experiments performed in the TROI research program and resulted in a spontaneous steam explosion using corium melt. First, the TROI-13 ...

  7. Is a Cambrian Explosion Coming for Robotics?

    OpenAIRE

    Gill A. Pratt

    2015-01-01

    About half a billion years ago, life on earth experienced a short period of very rapid diversification called the "Cambrian Explosion." Many theories have been proposed for the cause of the Cambrian Explosion, one of the most provocative being the evolution of vision, allowing animals to dramatically increase their ability to hunt and find mates. Today, technological developments on several fronts are fomenting a similar explosion in the diversification and applicability of robotics. Many of ...

  8. Shock Initiation of Damaged Explosives

    Energy Technology Data Exchange (ETDEWEB)

    Chidester, S K; Vandersall, K S; Tarver, C M

    2009-10-22

    Explosive and propellant charges are subjected to various mechanical and thermal insults that can increase their sensitivity over the course of their lifetimes. To quantify this effect, shock initiation experiments were performed on mechanically and thermally damaged LX-04 (85% HMX, 15% Viton by weight) and PBX 9502 (95% TATB, 5% Kel-F by weight) to obtain in-situ manganin pressure gauge data and run distances to detonation at various shock pressures. We report the behavior of the HMX-based explosive LX-04 that was damaged mechanically by applying a compressive load of 600 psi for 20,000 cycles, thus creating many small narrow cracks, or by cutting wedge shaped parts that were then loosely reassembled, thus creating a few large cracks. The thermally damaged LX-04 charges were heated to 190 C for long enough for the beta to delta solid - solid phase transition to occur, and then cooled to ambient temperature. Mechanically damaged LX-04 exhibited only slightly increased shock sensitivity, while thermally damaged LX-04 was much more shock sensitive. Similarly, the insensitive explosive PBX 9502 was mechanically damaged using the same two techniques. Since PBX 9502 does not undergo a solid - solid phase transition but does undergo irreversible or 'rachet' growth when thermally cycled, thermal damage to PBX 9502 was induced by this procedure. As for LX-04, the thermally damaged PBX 9502 demonstrated a greater shock sensitivity than mechanically damaged PBX 9502. The Ignition and Growth reactive flow model calculated the increased sensitivities by igniting more damaged LX-04 and PBX 9502 near the shock front based on the measured densities (porosities) of the damaged charges.

  9. Stellar Explosions: Hydrodynamics and Nucleosynthesis

    Science.gov (United States)

    José, Jordi

    2015-12-01

    Stars are the main factories of element production in the universe through a suite of complex and intertwined physical processes. Such stellar alchemy is driven by multiple nuclear interactions that through eons have transformed the pristine, metal-poor ashes leftover by the Big Bang into a cosmos with 100 distinct chemical species. The products of stellar nucleosynthesis frequently get mixed inside stars by convective transport or through hydrodynamic instabilities, and a fraction of them is eventually ejected into the interstellar medium, thus polluting the cosmos with gas and dust. The study of the physics of the stars and their role as nucleosynthesis factories owes much to cross-fertilization of different, somehow disconnected fields, ranging from observational astronomy, computational astrophysics, and cosmochemistry to experimental and theoretical nuclear physics. Few books have simultaneously addressed the multidisciplinary nature of this field in an engaging way suitable for students and young scientists. Providing the required multidisciplinary background in a coherent way has been the driving force for Stellar Explosions: Hydrodynamics and Nucleosynthesis. Written by a specialist in stellar astrophysics, this book presents a rigorous but accessible treatment of the physics of stellar explosions from a multidisciplinary perspective at the crossroads of computational astrophysics, observational astronomy, cosmochemistry, and nuclear physics. Basic concepts from all these different fields are applied to the study of classical and recurrent novae, type I and II supernovae, X-ray bursts and superbursts, and stellar mergers. The book shows how a multidisciplinary approach has been instrumental in our understanding of nucleosynthesis in stars, particularly during explosive events.

  10. Bacterial degradation of polychlorinted biphenyls in sludge from an industrial sewer lagoon

    Science.gov (United States)

    Kim, W. S.; Takacs, A. M.; Kuivinen, D. E.

    1983-01-01

    A laboratory experiment was conducted to determine if polychlorinated biphenyls (PCB's) found in an industrial sewer sludge can be effectively degraded by mutant bacteria. The aerated sludge was inoculated daily with mutant bacteria in order to augment the existing bacteria with bacteria that were considered to be capable of degrading PCB's. The pH, nitrogen, and phosphorus levels were monitored daily to maintain an optimum growing medium for the bacteria. A gas chromatographic method was used to determine the PCB concentrations of the sludge initially and also throughout the experiment. Results and discussion of the bacterial treatment of polychlorinated biphenyls are presented.

  11. The gas dynamics of explosions

    CERN Document Server

    Lee,\tJohn H S

    2016-01-01

    Explosions, and the non-steady shock propagation associated with them, continue to interest researchers working in different fields of physics and engineering (such as astrophysics and fusion). Based on the author's course in shock dynamics, this book describes the various analytical methods developed to determine non-steady shock propagation. These methods offer a simple alternative to the direct numerical integration of the Euler equations and offer a better insight into the physics of the problem. Professor Lee presents the subject systematically and in a style that is accessible to graduate students and researchers working in shock dynamics, combustion, high-speed aerodynamics, propulsion and related topics.

  12. Explosive demolition of activated concrete

    International Nuclear Information System (INIS)

    This paper describes the removal of a radiologically contaminated concrete pad. This pad was removed during 1979 by operating personnel under the direction of the Waste Management Program of EG and G Idaho, Inc. The concrete pad was the foundation for the Organic Moderated Reactor Experiment (OMRE) reactor vessel located at the Idaho National Engineering Laboratory (INEL). The pad consisted of a cylindrical concrete slab 15 ft in diameter, 2 ft thick, and reinforced with steel bar. It was poured directly onto basalt rocks approximately 20 ft below grade. The entire pad contained induced radioactivity and was therefore demolished, boxed, and buried rather than being decontaminated. The pad was demolished by explosive blasting

  13. Detonation Propagation Characteristics of Superposition Explosive Materials

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    In order to investigate detonation propagation characteristics of different charge patterns,the detonation velocities of superposition strip-shaped charges made up of a detonating cord and explosives were measured by a detonation velocity measuring instrument under conditions of different ignition.The experimental results and theoretical analysis show that the maximum detonation propagation velocity depends on the explosive materials with the maximum velocity among all the explosive materials.Using detonating cord in a superposition charge can shorten detonation propagation time and improve the efficiency of explosive energy.The measurement method of detonation propagation velocity and experimental results are presented and investigated.

  14. High Explosives Research and Development (HERD) Facility

    Data.gov (United States)

    Federal Laboratory Consortium — The purpose is to provide high explosive formulation, chemical analysis, safety and performance testing, processing, X-ray, quality control and loading support for...

  15. Analysis of TROI-13 Steam Explosion Experiment

    Directory of Open Access Journals (Sweden)

    Mitja Uršič

    2008-01-01

    Full Text Available The prediction of steam explosion inducing loads in nuclear power plants must be based on results of experimental research programmes and on simulations using validated fuel-coolant interaction codes. In this work, the TROI-13 steam explosion experiment was analysed with the fuel-coolant interaction MC3D computer code. The TROI-13 experiment is one of several experiments performed in the TROI research program and resulted in a spontaneous steam explosion using corium melt. First, the TROI-13 premixing simulations were performed to determine the initial conditions for the steam explosion simulations and to evaluate the melt droplets hydrodynamic fragmentation model. Next, a number of steam explosion simulations were performed, varying the steam explosion triggering position and the melt droplets mass participating in the steam explosion. The simulation results revealed that there is an important influence of the participating melt droplets mass on the calculated pressure loads, whereas the influence of the steam explosion triggering position on the steam explosion development was less expressive.

  16. Explosive Field Visualization Based on Image Fusion

    Institute of Scientific and Technical Information of China (English)

    ZHANG Wen-yao; JIANG Ling-shuang

    2009-01-01

    m the composite sequence. Experimental results show that the new images integrate the advantages of sources, effectively improve the visualization, and disclose more information about explosive field.

  17. Intracellular Bacteria in Protozoa

    Science.gov (United States)

    Görtz, Hans-Dieter; Brigge, Theo

    Intracellular bacteria in humans are typically detrimental, and such infections are regarded by the patients as accidental and abnormal. In protozoa it seems obvious that many bacteria have coevolved with their hosts and are well adapted to the intracellular way of life. Manifold interactions between hosts and intracellular bacteria are found, and examples of antibacterial resistance of unknown mechanisms are observed. The wide diversity of intracellular bacteria in protozoa has become particularly obvious since they have begun to be classified by molecular techniques. Some of the bacteria are closely related to pathogens; others are responsible for the production of toxins.

  18. 27 CFR 555.181 - Reporting of plastic explosives.

    Science.gov (United States)

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 3 2010-04-01 2010-04-01 false Reporting of plastic..., FIREARMS, AND EXPLOSIVES, DEPARTMENT OF JUSTICE EXPLOSIVES COMMERCE IN EXPLOSIVES Marking of Plastic Explosives § 555.181 Reporting of plastic explosives. All persons, other than an agency of the United...

  19. 30 CFR 75.1310 - Explosives and blasting equipment.

    Science.gov (United States)

    2010-07-01

    ... 30 Mineral Resources 1 2010-07-01 2010-07-01 false Explosives and blasting equipment. 75.1310... SAFETY AND HEALTH MANDATORY SAFETY STANDARDS-UNDERGROUND COAL MINES Explosives and Blasting § 75.1310 Explosives and blasting equipment. (a) Only permissible explosives, approved sheathed explosive units,...

  20. Chernobyl: Anatomy of the explosion

    International Nuclear Information System (INIS)

    On Friday, 26 April 1986, it was planned to shut down the fourth unit of the Chernobyl Atomic Power Station, U.S.S.R., for periodic maintenance. The procedure supplied the opportunity to perform a further experiment; operation of the turbine in free rotation regime, which occurs when the steam is cut down while the turbine is still running. It so happened that carrying out this experiment turned out to be the worst accident in the history of nuclear power industry. The first part of the article proceeds to a second by second detailed analysis of the causes of the catastrophe. The analysis uses official data and reports. The author covers the sequence of events, which led up to two explosions in the second hour of that tragic morning. In the second part of the article, the author provides hints and suggestions, so that 'the tragedy of Chernobyl does not become a useless lesson'. With regard to what, so far, has been published, the novelty of the article may be a diagram showing the excessive changes that affected the main parameters (power, water flow through circulating pumps, steam pressure in separators, and length of the immersed part of control rods) in the fourth unit during the last seconds before the explosion. If may be noteworthy to mention that the curves supplied here are based on data stored in the computer 'SCALA'. 2 figs