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Sample records for bacteria degrade explosives

  1. Bacteria and lignin degradation

    Institute of Scientific and Technical Information of China (English)

    Jing LI; Hongli YUAN; Jinshui YANG

    2009-01-01

    Lignin is both the most abundant aromatic (phenolic) polymer and the second most abundant raw material.It is degraded and modified by bacteria in the natural world,and bacteria seem to play a leading role in decomposing lignin in aquatic ecosystems.Lignin-degrading bacteria approach the polymer by mechanisms such as tunneling,erosion,and cavitation.With the advantages of immense environmental adaptability and biochemical versatility,bacteria deserve to be studied for their ligninolytic potential.

  2. Chitin Degradation In Marine Bacteria

    DEFF Research Database (Denmark)

    Paulsen, Sara; Machado, Henrique; Gram, Lone

    2015-01-01

    Introduction: Chitin is the most abundant polymer in the marine environment and the second most abundant in nature. Chitin does not accumulate on the ocean floor, because of microbial breakdown. Chitin degrading bacteria could have potential in the utilization of chitin as a renewable carbon...... and nitrogen source in the fermentation industry.Methods: Here, whole genome sequenced marine bacteria were screened for chitin degradation using phenotypic and in silico analyses.Results: The in silico analyses revealed the presence of three to nine chitinases in each strain, however the number of chitinases...... chitin regulatory system.Conclusions: This study has provided insight into the ecology of chitin degradation in marine bacteria. It also served as a basis for choosing a more efficient chitin degrading production strain e.g. for the use of chitin waste for large-scale fermentations....

  3. Hydrocarbon degradation by antarctic bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Cavanagh, J.A.E.; Nichols, P.D.; McMeekin, T.A.; Franzmann, P.D. [Univ. of Tasmania (Australia)] [and others

    1996-12-31

    Bacterial cultures obtained from sediment samples collected during a trial oil spill experiment conducted at Airport beach, Eastern Antarctica were selectively enriched for n-alkane-degrading and phenanthrenedegrading bacteria. Samples were collected from a control site and sites treated with different hydrocarbon mixtures - Special Antarctic blend (SAB), BP-Visco and orange roughy oils. One set of replicate sites was also treated with water from Organic Lake which had previously been shown to contain hydrocarbon-degrading bacteria. No viable bacteria were obtained from samples collected from sites treated with orange roughy oil. Extensive degradation of n-alkanes by enrichment cultures obtained from sites treated with SAB and BP-Visco occurred at both 25{degrees}C and 10{degrees}C. Extensive degradation of phenanthrene also occurred in enrichment cultures from these sites grown at 25{degrees}C. Concurrent increases of polar lipid in these cultures were also observed. The presence of 1,4-naphthaquinone and 1-naphthol during the growth of the cultures on phenanthrene is unusual and warrants further investigation of the mechanism of phenanthrene-degradation by these Antarctic bacteria.

  4. Serological studies on chloridazon-degrading bacteria.

    Science.gov (United States)

    Layh, G; Böhm, R; Eberspächer, J; Lingens, F

    1983-01-01

    Agglutination tests and immunofluorescence tests with antisera against four strains of chloridazon-degrading bacteria revealed the serological uniformity of a group of 22 chloridazon-degrading bacterial strains. No serological relationship could be found between chloridazon-degrading bacteria and representatives of other Gram-negative bacteria. This was demonstrated by agglutination tests, including testing of the antiserum against Acinetobacter calcoaceticus, and by immunofluorescence tests, including testing of the sera against Pseudomonas and Acinetobacter strains. The tests were performed with 31 representatives of different Gram-negative bacteria, and with 22 strains of chloridazon-degrading bacteria as antigens. Differences in the extent of agglutination reactions and antibody titres among chloridazon-degrading bacterial strains together with cross-adsorption xperiments, suggest a rough classification of chloridazon-degrading bacteria into two subgroups. On the basis of immunofluorescence data, a linkage-map was worked out to represent serological relationships in the group of chloridazon-degrading strains.

  5. Bacteria-mediated bisphenol A degradation.

    Science.gov (United States)

    Zhang, Weiwei; Yin, Kun; Chen, Lingxin

    2013-07-01

    Bisphenol A (BPA) is an important monomer in the manufacture of polycarbonate plastics, food cans, and other daily used chemicals. Daily and worldwide usage of BPA and BPA-contained products led to its ubiquitous distribution in water, sediment/soil, and atmosphere. Moreover, BPA has been identified as an environmental endocrine disruptor for its estrogenic and genotoxic activity. Thus, BPA contamination in the environment is an increasingly worldwide concern, and methods to efficiently remove BPA from the environment are urgently recommended. Although many factors affect the fate of BPA in the environment, BPA degradation is mainly depended on the metabolism of bacteria. Many BPA-degrading bacteria have been identified from water, sediment/soil, and wastewater treatment plants. Metabolic pathways of BPA degradation in specific bacterial strains were proposed, based on the metabolic intermediates detected during the degradation process. In this review, the BPA-degrading bacteria were summarized, and the (proposed) BPA degradation pathway mediated by bacteria were referred.

  6. Hydrocarbon Degrading Bacteria: Isolation and Identification

    Directory of Open Access Journals (Sweden)

    Lies Indah Sutiknowati

    2007-11-01

    Full Text Available There is little information how to identify hydrocarbon degrading bacteria for bioremediation of marine oil spills. We have used gravel which contaminated oil mousse from Beach Simulator Tank, in Marine Biotechnology Institute, Kamaishi, Japan, and grown on enrichment culture. Biostimulation with nutrients (N and P was done to analyze biodegradation of hydrocarbon compounds: Naphthalene, Phenanthrene, Trichlorodibenzofuran and Benzo[a]pyrene. Community of bacteria from enrichment culture was determined by DGGE. Isolating and screening the bacteria on inorganic medium contain hydrocarbon compounds and determination of bacteria by DAPI (number of cells and CFU. DNA was extracted from colonies of bacteria and sequence determination of the 16S rDNA was amplified by primers U515f and U1492r. Twenty nine strains had been sequence and have similarity about 90-99% to their closest taxa by homology Blast search and few of them have suspected as new species.

  7. HYDROCARBON-DEGRADING BACTERIA AND SURFACTANT ACTIVITY

    Energy Technology Data Exchange (ETDEWEB)

    Brigmon, R; Topher Berry, T; Grazyna A. Plaza, G; jacek Wypych, j

    2006-08-15

    Fate of benzene ethylbenzene toluene xylenes (BTEX) compounds through biodegradation was investigated using two different bacteria, Ralstonia picketti (BP-20) and Alcaligenes piechaudii (CZOR L-1B). These bacteria were isolated from extremely polluted petroleum hydrocarbon contaminated soils. PCR and Fatty Acid Methyl Ester (FAME) were used to identify the isolates. Biodegradation was measured using each organism individually and in combination. Both bacteria were shown to degrade each of the BTEX compounds. Alcaligenes piechaudii biodegraded BTEXs more efficiently while mixed with BP-20 and individually. Biosurfactant production was observed by culture techniques. In addition 3-hydroxy fatty acids, important in biosurfactant production, was observed by FAME analysis. In the all experiments toluene and m+p- xylenes were better growth substrates for both bacteria than the other BTEX compounds. In addition, the test results indicate that the bacteria could contribute to bioremediation of aromatic hydrocarbons (BTEX) pollution increase biodegradation through the action by biosurfactants.

  8. Hydrocarbon degradation by Antarctic coastal bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Cavanagh, J.E. [University of Tasmania, Hobart (Australia). Antarctic Cooperative Research Centre; CSIRO Div of Marine Research, Hobart (Australia); University of Tasmania, Hobart (Australia). Dept. of Agricultural Science; Nichols, P.D. [University of Tasmania, Hobart (Australia). Antarctic Cooperative Research Centre; CSIRO Div. of Marine Research, Hobart (Australia); Franzmann, P.D. [CSIRO Land and Water, Wembley (Australia); McMeekin, T.A. [University of Tasmania, Hobart (Australia). Antarctic Cooperative Research Centre

    1999-07-01

    Bacterial cultures obtained through selective enrichment of beach sand collected 60 days and one year after treatment of sites in a pilot oil spill trial conducted at Airport Beach, Vestfold Hills, East Antarctica, were examined for the ability to degrade n-alkanes and phenanthrene. The effects of different hydrocarbon mixtures (Special Antarctic Blend [SAB] and BP-Visco), (fish oil [orange roughy]) and inoculation of replicate sites with water from Organic Lake, (previously shown to contain hydrocarbon-degrading bacteria) on the indigenous microbial population, were examined. Of the cultures obtained, those from sites treated with SAB and BP-Visco degraded n-alkanes most consistently and typically to the greatest extent. Two mixed cultures obtained from samples collected at 60 days and two isolates obtained from these cultures extensively degraded phenanthrene. 1-Hydroxy-naphthoic acid formed the major phenanthrene metabolite. Lower levels of salicyclic acid, 1-naphthol, 1,4-naphthaquinone and phenanthrene 9-10 dihydrodiol were detected in extracts of phenanthrene grown cultures. This study shows that under laboratory conditions indigenous Antarctica bacteria can degrade n-alkanes and the more recalcitrant polycyclic aromatic hydrocarbon, phenanthrene. The enrichment of hydrocarbon degrading microorganisms in Antarctic ecosystems exposed to hydrocarbons, is relevant for the long term fate of hydrocarbon spills in this environment. (author)

  9. Contribution of ethylamine degrading bacteria to atrazine degradation in soils.

    Science.gov (United States)

    Smith, Daniel; Crowley, David E

    2006-11-01

    Bacterial communities that cooperatively degrade atrazine commonly consist of diverse species in which the genes for atrazine dechlorination and dealkylation are variously distributed among different species. Normally, the first step in degradation of atrazine involves dechlorination mediated by atzA, followed by stepwise dealkylation to yield either N-ethylammelide or N-isopropylammelide. As the liberated alkylamine moieties are constituents of many organic molecules other than atrazine, it is possible that a large number of alkylamine-degrading bacteria other than those previously described might contribute to this key step in atrazine degradation. To examine this hypothesis, we isolated 82 bacterial strains from soil by plating soil water extracts on agar media with ethylamine as a sole carbon source. Among the relatively large number of isolates, only 3 were able to degrade N-ethylammelide, and in each case were shown to carry the atzB gene and atzC genes. The isolates, identified as Rhizobium leguminosarum, Flavobacterium sp., and Arthrobacter sp., were all readily substituted into an atrazine-degrading consortium to carry out N-ethylammelide degradation. The distribution of these genes among many different species in the soil microbial population suggests that these genes are highly mobile and over time may lead to generation of various atrazine-degrading consortia.

  10. Estuarine ecology of phenanthrene-degrading bacteria

    Science.gov (United States)

    Guerin, William F.; Jones, Galen E.

    1989-08-01

    Phenanthrene degrading bacteria were ubiquitously distributed in waters and sediments of the Great Bay Estuary, NH, as determined using a 14C-phenanthrene mineralization assay. Similar activities were observed in water samples collected in March and June when these were incubated at 18 °C even though ambient water temperatures were 1-4 °C and 10-22 °C, respectively. This observation indicated the constant presence of a mesophilic phenanthrene-degrading bacterial population in the estuary. Among water samples, the highest biodegradation activities were associated with samples collected downstream from a dredging operation which introduced high concentrations of coal tar PAH (polycyclic aromatic hydrocarbons) into the Cocheco River, and in areas receiving PAH from pleasure and commercial boating activities. Mid-estuarine maxima in biodegradation activity during both sampling trips suggested adaptation of the microbial flora to the salinities prevailing in the low turnover, high residence time portion of the Estuary at the time of sampling. Despite the hydrophobicity of phenanthrene, no correlation between biodegradation rates and particulate matter concentrations were observed. Similarly, concentrations of nutrients and dissolved and particulate organic matter correlated poorly with biodegradation rates. Better agreements between 14C-phenanthrene mineralization potentials and plate counts on a phenanthrene/toluene agar (PTA) medium were observed. Phenanthrene biodegradative activities and numbers of culturable bacteria growing on PTA were governed by the degree of previous exposure to PAH.

  11. Biodegradation of Mixed PAHs by PAH-Degrading Endophytic Bacteria

    OpenAIRE

    Xuezhu Zhu; Xue Ni; Michael Gatheru Waigi; Juan Liu; Kai Sun; Yanzheng Gao

    2016-01-01

    Endophytic bacteria can promote plant growth, induce plant defence mechanisms, and increase plant resistance to organic contaminants. The aims of the present study were to isolate highly PAH-degrading endophytic bacteria from plants growing at PAH-contaminated sites and to evaluate the capabilities of these bacteria to degrade polycyclic aromatic hydrocarbons (PAHs) in vitro, which will be beneficial for re-colonizing target plants and reducing plant PAH residues through the inoculation of pl...

  12. Method Designed To Detect Alginate-Degrading Bacteria

    OpenAIRE

    Kitamikado, Manabu; Yamaguchi, Kuniko; Tseng, Chao-Huang; Okabe, Bun'Ichi

    1990-01-01

    A simple turbidimetric method was developed to detect alginate degradation. Bacteria were grown in alginate-containing media, and culture fluids were mixed with an acidic albumin solution. Failure to develop a white turbidity indicated an alginate degrader. The method showed alginate degradation by Vibrio alginolyticus ATCC 17749, in contrast to prior descriptions.

  13. Nitrogen acquisition in Agave tequilana from degradation of endophytic bacteria

    OpenAIRE

    Beltran-Garcia, Miguel J.; White, JR; Prado, Fernanda M; Prieto, Katia R.; Yamaguchi, Lydia F.; Torres, Monica S.; Kato, Massuo J.; Medeiros, Marisa H. G.; Di Mascio,Paolo

    2014-01-01

    Plants form symbiotic associations with endophytic bacteria within tissues of leaves, stems, and roots. It is unclear whether or how plants obtain nitrogen from these endophytic bacteria. Here we present evidence showing nitrogen flow from endophytic bacteria to plants in a process that appears to involve oxidative degradation of bacteria. In our experiments we employed Agave tequilana and its seed-transmitted endophyte Bacillus tequilensis to elucidate organic nitrogen transfer from 15N-labe...

  14. Nitrogen acquisition in Agave tequilana from degradation of endophytic bacteria.

    Science.gov (United States)

    Beltran-Garcia, Miguel J; White, James F; Prado, Fernanda M; Prieto, Katia R; Yamaguchi, Lydia F; Torres, Monica S; Kato, Massuo J; Medeiros, Marisa H G; Di Mascio, Paolo

    2014-11-06

    Plants form symbiotic associations with endophytic bacteria within tissues of leaves, stems, and roots. It is unclear whether or how plants obtain nitrogen from these endophytic bacteria. Here we present evidence showing nitrogen flow from endophytic bacteria to plants in a process that appears to involve oxidative degradation of bacteria. In our experiments we employed Agave tequilana and its seed-transmitted endophyte Bacillus tequilensis to elucidate organic nitrogen transfer from (15)N-labeled bacteria to plants. Bacillus tequilensis cells grown in a minimal medium with (15)NH4Cl as the nitrogen source were watered onto plants growing in sand. We traced incorporation of (15)N into tryptophan, deoxynucleosides and pheophytin derived from chlorophyll a. Probes for hydrogen peroxide show its presence during degradation of bacteria in plant tissues, supporting involvement of reactive oxygen in the degradation process. In another experiment to assess nitrogen absorbed as a result of endophytic colonization of plants we demonstrated that endophytic bacteria potentially transfer more nitrogen to plants and stimulate greater biomass in plants than heat-killed bacteria that do not colonize plants but instead degrade in the soil. Findings presented here support the hypothesis that some plants under nutrient limitation may degrade and obtain nitrogen from endophytic microbes.

  15. Anaerobic degradation of benzoate by sulfate-reducing bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Silva, S.P.; Adorno, M.A.T.; Moraes, E.M.; Varesche, M.B.A. [Sao Paulo Univ., Sao Carlos, SP (Brazil). Biological Processes Laboratory

    2004-07-01

    Anaerobic processes are an efficient way to degrade aromatic compounds in industrial wastewater, such as phenol, cresol and benzoate. This study characterized the bacteria that degrades benzoate, an anaerobic degradation intermediate of several complex aromatic compounds. In particular, the study assessed the capacity to use benzoate with sulfate reducing bacteria in mesophilic conditions. Biofilm from polyurethane foam matrices of a fixed bed reactor was used as the cellular inoculum to treat industrial wastewater containing organic peroxide. Dilution techniques were used to purify the material and obtain cultures of cocci. The benzoate consumption capacity in sulfidogenic conditions was observed when the purified inoculum was applied to batch reactors with different benzoate/sulfate relations. Results indicate that purification was positive to bacteria that can degrade aromatic compounds. Desulfococcus multivorans bacteria was identified following the physiologic and kinetic experiments. The 0.6 benzoate/sulfate relation was considered ideal for complete consumption of carbon and total use of sulfur. 10 refs., 3 figs.

  16. Do feather-degrading bacteria affect sexually selected plumage color?

    Science.gov (United States)

    Shawkey, Matthew D.; Pillai, Shreekumar R.; Hill, Geoffrey E.

    2009-01-01

    Models of parasite-mediated sexual selection propose that males with more elaborate sexual traits will have fewer parasites. These models have generally been tested using metazoan or protozoan parasites of the blood, gut, or integument. Fewer studies have examined sexual ornaments in relation to bacterial infections. While most surface bacteria are harmless or beneficial, feather-degrading bacteria may have detrimental effects. In this study, we examined the relationships between overall bacterial load, feather-degrading bacterial load, and sexually selected carotenoid-based plumage color in a wild population of house finches ( Carpodacus mexicanus). We found that males with the redder plumage preferred by females had similar overall bacterial loads, but lower feather-degrading bacterial loads, than males with less red plumage. These data suggest that plumage color can signal abundance of feather-degrading bacteria to potential mates. It remains unclear whether feather-degrading bacteria directly or indirectly affect plumage color, but the observed correlations suggest that feather-degrading bacteria may play some role in sexual selection.

  17. Biodegradation of Mixed PAHs by PAH-Degrading Endophytic Bacteria.

    Science.gov (United States)

    Zhu, Xuezhu; Ni, Xue; Waigi, Michael Gatheru; Liu, Juan; Sun, Kai; Gao, Yanzheng

    2016-08-09

    Endophytic bacteria can promote plant growth, induce plant defence mechanisms, and increase plant resistance to organic contaminants. The aims of the present study were to isolate highly PAH-degrading endophytic bacteria from plants growing at PAH-contaminated sites and to evaluate the capabilities of these bacteria to degrade polycyclic aromatic hydrocarbons (PAHs) in vitro, which will be beneficial for re-colonizing target plants and reducing plant PAH residues through the inoculation of plants with endophytic bacteria. Two endophytic bacterial strains P₁ (Stenotrophomonas sp.) and P₃ (Pseudomonas sp.), which degraded more than 90% of phenanthrene (PHE) within 7 days, were isolated from Conyza canadensis and Trifolium pretense L., respectively. Both strains could use naphthalene (NAP), PHE, fluorene (FLR), pyrene (PYR), and benzo(a)pyrene (B(a)P) as the sole sources of carbon and energy. Moreover, these bacteria reduced the contamination of mixed PAHs at high levels after inoculation for 7 days; strain P₁ degraded 98.0% NAP, 83.1% FLR, 87.8% PHE, 14.4% PYR, and 1.6% B(a)P, and strain P₃ degraded 95.3% NAP, 87.9% FLR, 90.4% PHE, 6.9% PYR, and negligible B(a)P. Notably, the biodegradation of PAHs could be promoted through additional carbon and nitrogen nutrients; therein, beef extract was suggested as the optimal co-substrate for the degradation of PAHs by these two strains (99.1% PHE was degraded within 7 days). Compared with strain P₁, strain P₃ has more potential for the use in the removal of PAHs from plant tissues. These results provide a novel perspective in the reduction of plant PAH residues in PAH-contaminated sites through inoculating plants with highly PAH-degrading endophytic bacteria.

  18. Biodegradation of Mixed PAHs by PAH-Degrading Endophytic Bacteria

    Directory of Open Access Journals (Sweden)

    Xuezhu Zhu

    2016-08-01

    Full Text Available Endophytic bacteria can promote plant growth, induce plant defence mechanisms, and increase plant resistance to organic contaminants. The aims of the present study were to isolate highly PAH-degrading endophytic bacteria from plants growing at PAH-contaminated sites and to evaluate the capabilities of these bacteria to degrade polycyclic aromatic hydrocarbons (PAHs in vitro, which will be beneficial for re-colonizing target plants and reducing plant PAH residues through the inoculation of plants with endophytic bacteria. Two endophytic bacterial strains P1 (Stenotrophomonas sp. and P3 (Pseudomonas sp., which degraded more than 90% of phenanthrene (PHE within 7 days, were isolated from Conyza canadensis and Trifolium pretense L., respectively. Both strains could use naphthalene (NAP, PHE, fluorene (FLR, pyrene (PYR, and benzo(apyrene (B(aP as the sole sources of carbon and energy. Moreover, these bacteria reduced the contamination of mixed PAHs at high levels after inoculation for 7 days; strain P1 degraded 98.0% NAP, 83.1% FLR, 87.8% PHE, 14.4% PYR, and 1.6% B(aP, and strain P3 degraded 95.3% NAP, 87.9% FLR, 90.4% PHE, 6.9% PYR, and negligible B(aP. Notably, the biodegradation of PAHs could be promoted through additional carbon and nitrogen nutrients; therein, beef extract was suggested as the optimal co-substrate for the degradation of PAHs by these two strains (99.1% PHE was degraded within 7 days. Compared with strain P1, strain P3 has more potential for the use in the removal of PAHs from plant tissues. These results provide a novel perspective in the reduction of plant PAH residues in PAH-contaminated sites through inoculating plants with highly PAH-degrading endophytic bacteria.

  19. Isolation and identification of novel geosmin-degrading bacteria.

    Science.gov (United States)

    Xue, Qiang; Chen, Gang; Shimizu, Kazuya; Sakharkar, Meena Kishore; Utsumi, Motoo; Chen, Honghan; Li, Miao; Zhang, Zhenya; Sugiura, Norio

    2011-06-01

    Three novel geosmin-degrading bacteria were isolated from the sediments of Lake Kasumigaura, Japan. All strains were identified as Acinetobacter spp. by 16S rRNA gene sequence analysis and can biodegrade geosmin at an initial geosmin concentration of 2 mg/L after 2 days. Furthermore, at an initial geosmin concentration of 40 microg/L, geosmin removal was more than 68per cent by GSM-2 strain, and the degradation mechanism followed a pseudo-first-order mode. A rate constant of 0.026 reveals rapid geosmin degradation. This is the first report on geosmin degradation by by Acinetobacter spp.

  20. ISOLATION AND IDENTIFICATION OF ACR YLAMIDE DEGRADING BACTERIA FROM SOIL

    Directory of Open Access Journals (Sweden)

    Nidhi Jain

    2013-02-01

    Full Text Available Acrylamide is an aliphatic amide, which is produced by industrial processes and during heating of food. It is neurotoxic and a suspected carcinogen. In the present study an attempt was made to isolate acrylamide degrading bacteria from soil. The optimum growth conditions and physiological characteristics for the isolated acrylamide degrading bacteria were investigated. The isolated bacterium was identified as Bacillus clausii strain 1779 based on full 16S rRNA molecular phylogeny. The bacteria can degrade 800 mg l-1acrylamide after eight days of incubation with concomitant cell growth. In addition to above, it also grows optimally at a concentration of acrylamide between 500-2000 mg l-1between pH 8-10 and temperature and 25 – 45 0C. Thus the isolate would be useful in the bioremediation of environment from acrylamide in alkali conditions.

  1. 'Rare biosphere' bacteria as key phenanthrene degraders in coastal seawaters.

    Science.gov (United States)

    Sauret, Caroline; Séverin, Tatiana; Vétion, Gilles; Guigue, Catherine; Goutx, Madeleine; Pujo-Pay, Mireille; Conan, Pascal; Fagervold, Sonja K; Ghiglione, Jean-François

    2014-11-01

    By coupling DNA-SIP and pyrosequencing approaches, we identified Cycloclasticus sp. as a keystone degrader of polycyclic aromatic hydrocarbons (PAH) despite being a member of the 'rare biosphere' in NW Mediterranean seawaters. We discovered novel PAH-degrading bacteria (Oceanibaculum sp., Sneathiella sp.) and we identified other groups already known to possess this function (Alteromonas sp., Paracoccus sp.). Together with Cycloclasticus sp., these groups contributed to potential in situ phenanthrene degradation at a rate >0.5 mg l(-1) day(-1), sufficient to account for a considerable part of PAH degradation. Further, we characterized the PAH-tolerant bacterial communities, which were much more diverse in the polluted site by comparison to unpolluted marine references. PAH-tolerant bacteria were also members of the rare biosphere, such as Glaciecola sp. Collectively, these data show the complex interactions between PAH-degraders and PAH-tolerant bacteria and provide new insights for the understanding of the functional ecology of marine bacteria in polluted waters.

  2. Do marine bacteria degrade. alpha. -hexachlorocyclohexane stereoselectively

    Energy Technology Data Exchange (ETDEWEB)

    Faller, J.; Huehnerfuss, H.; Koenig, W.A.; Krebber, R.; Ludwig, P. (Univ. Hamburg (West Germany))

    1991-04-01

    The enantiomeric ratio of a chiral organic pollutant has been determined gas chromatographically for the first time at low concentrations as encountered in a North Sea water sample by using heptakis (3-O-butyryl-2,6-di-O-pentyl)-{beta}-cyclodextrin as a chiral stationary phase. As an example, the separation of the enantiomers of {alpha}-hexachlorocyclo-hexane ({alpha}-HCH) is shown herein. However, the method is expected to be generally applicable to many environmental problems that are related to chiral biogenic and anthropogenic substances and chiral degradation products. The potential of this experimental approach for a discrimination between enzymatic and nonenzymatic processes in marine and terrestric ecosystems is discussed.

  3. Isolation and identification of Profenofos degrading bacteria

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    Saadatullah Malghani

    2009-12-01

    Full Text Available An enrichment culture technique was used to isolate bacterial strains responsible for the biodegradation of profenofos in a soil from Hubei province of central China. Two pure bacterial cultures, named W and Y, were isolated and subsequently characterized by sequencing of 16S rRNA genes and biochemical tests. Isolate W showed 96% similarity to the 16S rRNA gene of a Pseudomonas putida unlike Y which showed 99% similarity to the 16S rRNA gene of Burkholderia gladioli. Both strains grew well at pH 5.5-7.2 with a broad temperature profile ranging from 28º to 36 ºC. Bioremediation of profenofos-contaminated soil was examined using soil treated with 200 ug g-1; profenofos resulted in a higher degradation rate than control soils without inoculation. In a mineral salt medium (FTW reduction in profenofos concentration was 90% within 96 hours of incubation. A literature survey revealed that no data is available regarding the role of Burkholderia gladioli on pesticide biodegradation as well as on profenofos.

  4. Biotransformation of geosmin by terpene-degrading bacteria.

    Science.gov (United States)

    Two terpene-degrading bacteria that are able to transform geosmin have been identified. Pseudomonas sp. SBR3-tpnb, isolated on -terpinene, converts geosmin to several products; the major products are keto-geosmins. This geosmin transformation ability is inducible by -terpinene. Rhodococcus wratisl...

  5. Isolation of Asphaltene-Degrading Bacteria from Sludge Oil

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    Pingkan Aditiawati

    2015-03-01

    Full Text Available Sludge oil contains 30%–50% hydrocarbon fractions that comprise saturated fractions, aromatics, resins, and asphaltene. Asphaltene fraction is the most persistent fraction. In this research, the indigenous bacteria that can degrade asphaltene fractions from a sludge oil sample from Balikpapan that was isolated using BHMS medium (Bushnell-Hass Mineral Salt with 0.01% (w/v yeast extract, 2% (w/v asphaltene extract, and 2% (w/v sludge oil. The ability of the four isolates to degrade asphaltene fractions was conducted by the biodegradation asphaltene fractions test using liquid cultures in a BHMS medium with 0.01% (w/v yeast extract and 2% (w/v asphaltene extract as a carbon source. The parameters measured during the process of biodegradation of asphaltene fractions include the quantification of Total Petroleum Hydrocarbon (g, log total number of bacteria (CFU/ml, and pH. There are four bacteria (isolates 1, 2, 3, and 4 that have been characterized to degrade asphaltic fraction and have been identified as Bacillus sp. Lysinibacillus fusiformes, Acinetobacter sp., and Mycobacterium sp., respectively. The results showed that the highest ability to degrade asphaltene fractions is that of Bacillus sp. (isolate 1 and Lysinibacillus fusiformes (Isolate 2, with biodegradation percentages of asphaltene fractions being 50% and 55%, respectively, and growth rate at the exponential phase is 7.17x107 CFU/mL.days and 4.21x107 CFU/mL.days, respectively.

  6. Cariogenic bacteria degrade dental resin composites and adhesives.

    Science.gov (United States)

    Bourbia, M; Ma, D; Cvitkovitch, D G; Santerre, J P; Finer, Y

    2013-11-01

    A major reason for dental resin composite restoration replacement is related to secondary caries promoted by acid production from bacteria including Streptococcus mutans (S. mutans). We hypothesized that S. mutans has esterase activities that degrade dental resin composites and adhesives. Standardized specimens of resin composite (Z250), total-etch (Scotchbond Multipurpose, SB), and self-etch (Easybond, EB) adhesives were incubated with S. mutans UA159 or uninoculated culture medium (control) for up to 30 days. Quantification of the BisGMA-derived biodegradation by-product, bishydroxy-propoxy-phenyl-propane (BisHPPP), was performed by high-performance liquid chromatography. Surface analysis of the specimens was performed by scanning electron microscopy (SEM). S. mutans was shown to have esterase activities in levels comparable with those found in human saliva. A trend of increasing BisHPPP release throughout the incubation period was observed for all materials and was more elevated in the presence of bacteria vs. control medium for EB and Z250, but not for SB (p < .05). SEM confirmed the increased degradation of all materials with S. mutans UA159 vs. control. S. mutans has esterase activities at levels that degrade resin composites and adhesives; degree of degradation was dependent on the material's chemical formulation. This finding suggests that the resin-dentin interface could be compromised by oral bacteria that contribute to the progression of secondary caries.

  7. Biotransformations of (+/-)-geosmin by terpene-degrading bacteria.

    Science.gov (United States)

    Eaton, Richard W; Sandusky, Peter

    2010-02-01

    Two terpene-degrading bacteria able to transform (+/-)-geosmin have been identified. Pseudomonas sp. SBR3-tpnb, following growth on gamma-terpinene, converts (+/-)-geosmin to several products; the major products are ketogeosmins. Rhodococcus wratislaviensis DLC-cam, isolated on D-camphor, also converts (+/-)-geosmin to several oxidation products, primarily ketogeosmins identical to those produced by strain SBR3-tpnb as well as hydroxygeosmins. This conversion appears to be inducible by (+/-)-geosmin and not by D-camphor.

  8. Biotransformations of 2-Methylisoborneol by Camphor-Degrading Bacteria

    OpenAIRE

    2008-01-01

    Many camphor-degrading bacteria that are able to transform 2-methylisoborneol (2-MIB) have been identified. Three of these strains have been examined in detail. Rhodococcus ruber T1 metabolizes camphor through 6-hydroxycamphor but converts 2-MIB to 3-hydroxy-2-MIB. Pseudomonas putida G1, which metabolizes camphor through 5-hydroxycamphor, converts MIB primarily to 6-hydroxy-2-MIB. Rhodococcus wratislaviensis DLC-cam converts 2-MIB through 5-hydroxy-2-MIB to 5-keto-2-MIB. Together, these three...

  9. Straw bio-degradation by acidogenic bacteria and composite fungi

    Institute of Scientific and Technical Information of China (English)

    ZHANG Ke-qiang; CHEN Xiu-wei; JI Min; NING An-rong; FAN Huan; ZHOU Ke

    2004-01-01

    A composite microbial system, including a strain of Candida tropicalis ( W3 ), a strain of Lactobacillus plantarm(WY3) and three strains of basidiomycete pL104, pL113 and C33, was chosen to degrade corn straw.The final pH was acid owing to the inoculation of acidogenic bacteria, and under this condition the composite fungi system could produce complex enzyme to destroy the compact structure of corn straw. The experimental results showed that the biomass of composite fungi could reach up to maximum when the pH value was 4.5. Through the bio-degradation by combining acidogenic bacteria with the composite fungi system, the cellulose, hemi-cellulose and lignin degradation rates of corn straw powder were 26.36%, 43.30% and 26.96%, respectively. And the gross crude protein content increased 60.41%. This study provided the evidence for the feasibility of developing a composite microbial system with high capability of degrading straw lignocelluloses in order to make reasonable use of straw resource and protect rural eco-environment.

  10. [Isolation identification and characterization of halotolerant petroleum-degrading bacteria].

    Science.gov (United States)

    Wu, Tao; Xie, Wen-Jun; Yi, Yan-Li; Li, Xiao-Bin; Wang, Jun; Hu, Xiang-Ming

    2012-11-01

    To obtain efficient halotolerant petroleum-degrading bacteria, 39 bacteria strains were isolated from 30 petroleum contaminated saline soil samples in Yellow River Delta, an important base of petroleum production in China. One bacterium (strain BM38) was found to efficiently degrade crude oil in highly saline environments based on a series of liquid and soil incubation experiments. According to its morphology, physiochemical characteristics and 16S rDNA sequence analysis, this strain was identified as Pseudomonas putida. Moreover, a series of liquid incubation experiments were conducted to investigate its characteristics such as halotolerance, biosurfactants production and degrading efficiency for various hydrocarbons. The salt resistance test demonstrated that strain BM38 grew well at NaCl concentrations ranging from 0.5% to 6.0%. Petroleum degradation experiments showed that strain BM38 could degrade 73.5% crude oil after 7 days in a liquid culture medium containing 1.0% NaCl and remove more than 40% of total petroleum hydrocarbons after 40 days in the soil with 0.22% and 0.61% of salinity, these results proved that the strain was effective in removing petroleum hydrocarbons. Strain BM38 could produce a bioemulsifier in a liquid culture medium. The NaCl concentration had the significant effect on the EI24 of fermentation broth, which decreased sharply if the NaCl concentration was greater than 1.0%. However, the EI24 of BM38 was still quite high in the presence of 2.0% of NaCl, and the value was 61.0%. Furthermore, this strain was also able to grow in mineral liquid media amended with hexadecane, toluene, phenanthrene, isooctane and cyclohexane as the sole carbon sources. Among these hydracarbons, strain BM38 showed relatively high ability in degrading n-alkanes and aromatic hydracarbons. The results indicated that strain BM38 had potential for application in bioremediation of petroleum-contaminated saline soil.

  11. Individually and Synergistic Degradation of Hydrocarbons by Biosurfactant Producing Bacteria

    Directory of Open Access Journals (Sweden)

    Amirarsalan Kavyanifard

    2016-02-01

    Full Text Available Background: Increasing worldwide contamination with hydrocarbons has urged environmental remediation using biological agents such as bacteria. Our goal here was to study the phylogenetic relationship of two crude oil degrader bacteria and investigation of their ability to degrade hydrocarbons. Materials and Methods: Phylogenetic relationship of isolates was determined using morphological and biochemical characteristics and 16S rDNA gene sequencing. Optimum conditions of each isolate for crude oil degradation were investigated using one factor in time method. The rate of crude oil degradation by individual and consortium bacteria was assayed via Gas chromatography–mass spectrometry (GC-MS analysis. Biosurfactant production was measured by Du Noüy ring method using Krüss-K6 tensiometer. Results: The isolates were identified as Dietzia cinnamea KA1 and Dietzia cinnamea AP and clustered separately, while both are closely related to each other and with other isolates of Dietzia cinnamea. The optimal conditions for D. cinnamea KA1 were 35°C, pH9.0, 510 mM NaCl, and minimal requirement of 46.5 mM NH4Cl and 2.10 mM NaH2PO4. In the case of D. cinnamea AP, the values were 30°C, pH8.0, 170 mM NaCl, and minimal requirement of 55.8 mM NH4Cl and 2.10 mM NaH2PO4, respectively. Gas chromatography – Mass Spectroscopy (GC-MS analysis showed that both isolates were able to utilize various crude oil compounds, but D. cinnamea KA1 was more efficient individually and consortium of isolates was the most. The isolates were able to grow and produce biosurfactant when cultured in MSM supplemented with crude oil and optimization of MSM conditions lead to increase in biosurfactant production. Conclusion: To the best of our knowledge this is the first report of synergistic relationship between two strains of D. cinnamea in biodegradation of crude oil components, including poisonous and carcinogenic compound in a short time.

  12. Anaerobic degradation of benzene by marine sulfate-reducing bacteria

    Science.gov (United States)

    Musat, Florin; Wilkes, Heinz; Musat, Niculina; Kuypers, Marcel; Widdel, Friedrich

    2010-05-01

    Benzene, the archetypal aromatic hydrocarbon is a common constituent of crude oil and oil-refined products. As such, it can enter the biosphere through natural oil seeps or as a consequence of exploitation of fossil fuel reservoirs. Benzene is chemically very stable, due to the stabilizing aromatic electron system and to the lack of functional groups. Although the anaerobic degradation of benzene has been reported under denitrifying, sulfate-reducing and methanogenic conditions, the microorganisms involved and the initial biochemical steps of degradation remain insufficiently understood. Using marine sediment from a Mediterranean lagoon a sulfate-reducing enrichment culture with benzene as the sole organic substrate was obtained. Application of 16S rRNA gene-based methods showed that the enrichment was dominated (more than 85% of total cells) by a distinct phylotype affiliated with a clade of Deltaproteobacteria that include degraders of other aromatic hydrocarbons, such as naphthalene, ethylbenzene and m-xylene. Using benzoate as a soluble substrate in agar dilution series, several pure cultures closely related to Desulfotignum spp. and Desulfosarcina spp. were isolated. None of these strains was able to utilize benzene as a substrate and hybridizations with specific oligonucleotide probes showed that they accounted for as much as 6% of the total cells. Incubations with 13C-labeled benzene followed by Halogen in situ Hybridization - Secondary Ion Mass Spectroscopy (HISH-SIMS) analysis showed that cells of the dominant phylotype were highly enriched in 13C, while the accompanying bacteria had little or no 13C incorporation. These results demonstrate that the dominant phylotype was indeed the apparent benzene degrader. Dense-cell suspensions of the enrichment culture did not show metabolic activity toward added phenol or toluene, suggesting that benzene degradation did not proceed through anaerobic hydroxylation or methylation. Instead, benzoate was identified in

  13. [Degradation and biosynthesis of L-phenylalanine by chloridazon-degrading bacteria].

    Science.gov (United States)

    Buck, R; Eberspächer, J; Lingens, F

    1979-07-01

    Incubating chloridazon-degrading bacteria with L-phenylalanine leads to the accumulation of L-2,3-dihydroxyphenylalanine, o-tyrosine and m-tyrosine in the medium. Incubating the bacteria with N-acetyl-L-phenylalanine leads to N-acetyl-(2,3-dihydroxyphenyl)alanine. Using phenylacetic acid as substrate leads to the accumulation of malonic acid. The products are isolated by gel chromatography and high performance liquid chromatography. 2,3-Dihydroxy-L-phenylalanine is attacked by a catechol 2,3-dioxygenase in the presence of Fe2. An unstable yellow compound is formed in this reaction. This meta-cleavage-product is again cleaved by a hydrolase, leading to aspartic acid and 4-hydroxy-2-oxovaleric acid. Both products were isolated fromthe reaction buffer by amino acid analysis and high performance liquid chromatography. The dioxygenase and hydrolase were partially purified and characterized. A new degradation pathway for phenylalanine is discussed and compared with known pathways. The enzymes chorismate mutase, prephenate dehydratase and prephenate dehydrogenase are characterized and inhibition as well as repression are investigated. Only prephenate dehydrogenase is inhibited by phenylalanine, tyrosine and tryptophane. Chorismate mutase is repressed by phenylalanine, prephenate dehydrogenase by phenylalanine and tyrosine. Prephenate dehydratase is not repressed by aromatic amino acids. Regulation of aromatic amino acid biosynthesis in connection with phenylalanine degradation is discussed.

  14. Isolation and characterization of endosulfan-degrading bacteria from contaminated agriculture soils

    Directory of Open Access Journals (Sweden)

    Mehdi Hassanshahian

    2016-04-01

    Full Text Available Objective: To isolate and characterize endosulfan-degrading bacteria from Kerman pistachio orchards. Methods: Endosulfan-degrading bacteria were enriched in Bushnell-Hass medium. Identification and sequencing of prevalent degrading strains was performed by using PCR based on amplifying 16S rDNA. Results: The results showed that the soils of pistachio orchards have some degrading bacteria that are suitable for elimination of endosulfan from soils and the environment. Four endosulfandegrading bacteria strains belong to Achromobacter xylosoxidans (strain EN3, Pseudomonas azotoformans (strain EN4, Pseudomonas brassicacearum (strain EN7 and Pseudomonas thivervalensis (strain EN8, respectively. The best degrading strain (EN7, up to 100 mg/L, illustrated a good growth, whereas the growth was reduced in concentration higher than 100 mg/L. The results of gas chromatography confirmed the decomposition of organic pesticide by degrading-bacteria. Conclusions: By using these strains and other biological reclamation methods we can eliminate bio-environmental problems.

  15. Different Abilities of Eight Mixed Cultures of Methane-oxidizing Bacteria to Degrade TCE

    DEFF Research Database (Denmark)

    Broholm, Kim; Christensen, Thomas Højlund; Jensen, Bjørn K.

    1993-01-01

    The ability of eight mixed cultures of methane-oxidizing bacteria to degrade trichloroethylene (TCE) was examined in laboratory batch experiments. This is one of the first reported works studying TCE degradation by mixed cultures of methane-oxidizing bacteria at 10°C, a common temperature for soils...

  16. Isolation of Soil Bacteria Species for Degrading Dibenzothiophene

    Institute of Scientific and Technical Information of China (English)

    JIANGChengying; LIUHuizhou; 等

    2002-01-01

    Five bacterial strains,which are able to grow and to disintegrate dibenzothiophene (DBT) and dibenzothiophene sulfone (DBTO2) in fossil fuels,are isolated.Analysis of products of DBT metabolized by these strains shows that different bacteria strains oxidize DBT by different pathways.The isolated strains R-6,R-16,R-9 and R-8 can metabolize DBT to DBTO2 and 2-hydroxybiphenyl(HBP),which are identified as Bacillus brevis,Bacillus sphaericus,Nocardia globerula and Pseudomonas delafieldii respectively.Another strain R-12 identified as Pseudomonas sp. can degrade DBT completely but it cannot produce DBTO2 and HBP. The optimum temperature and initial pH for desulfurization by R-8 are 32℃ and 7.02 respectively and pH of the broth decreases during biodegradation.The growth of strain R-8 with different sulfur-sources indicates that this strain in DBT medium has an induction period of 3 days,which is longer than those with dimethylsulfoxide and MgSO4 media,but the growth rate of the bacterial strain in DBT is higher after the induction.Higher growth and desulfurization rates are observed in the DBT-hexadecane system than in both DBT-ethanol and DBT-dimethylformamide systems.Both strains of R-8 and R-9 also show higher desulfurization activities toward other sulfur-substrates,indicating that they have greater desulfurization potential in application.

  17. Selection of the Bacteria Being Able to Degrade Kerosene and Study on the Growth Conditions of the Bacteria

    Institute of Scientific and Technical Information of China (English)

    LI; Ping; ZHUO; Feng-ping; GAO; Li-hong; CAI; Ming

    2012-01-01

    [Objective] The study aimed at selecting the predominant strains being able to degrade kerosene and studying its best growth conditions. [Method] Choosing kerosene as the only carbon source, we selected and separated the predominant strains being able to degrade kerosene from the contaminated soil near petrochemical plants, and then optimized the grow conditions of the bacteria. [Result] The best conditions for the bacteria growth were determined as follows, that is, temperature was 30 ℃, pH=7, salinity was 2.5%, and the rotational speed of the thermostatic shake was 190 r/min. Under the optimal conditions, the degradation rate of kerosene by the bacteria cultured for three days reached 42.6%. [Conclusion] The research could provide scientific references for the restoration of polluted soil by kerosene.

  18. Effect of steam explosion and microbial fermentation on cellulose and lignin degradation of corn stover.

    Science.gov (United States)

    Chang, Juan; Cheng, Wei; Yin, Qingqiang; Zuo, Ruiyu; Song, Andong; Zheng, Qiuhong; Wang, Ping; Wang, Xiao; Liu, Junxi

    2012-01-01

    In order to increase nutrient values of corn stover, effects of steam explosion (2.5 MPa, 200 s) and Aspergillus oryzae (A. oryzae) fermentation on cellulose and lignin degradation were studied. The results showed the contents of cellulose, hemicellulose and lignin in the exploded corn stover were 8.47%, 50.45% and 36.65% lower than that in the untreated one, respectively (Pcorn stover (EFCS) were decreased by 24.36% and 69.90%, compared with the untreated one (Pcorn stover. The activities of enzymes in EFCS were increased. The metabolic experiment showed that about 8% EFCS could be used to replace corn meal in broiler diets, which made EFCS become animal feedstuff possible.

  19. Microbial Degradation of Polycyclic Aromatic Hydrocarbons and Characterization of Bacteria

    Science.gov (United States)

    Tikilili, P. V.; Chirwa, E. M. N.

    2010-01-01

    Biodegradation of polycyclic aromatic hydrocarbons was studied. Naphthalene was used as a model compound to represent these compounds. Low initial concentrations of naphthalene in a range of 30-60 mg/L were completely degraded after incubation for 15 hrs by consortia from a landfill soil while consortia from minewater took more that 29 hrs to reach complete degradation.

  20. Enrichment and isolation of crude oil degrading bacteria from some mussels collected from the Persian Gulf.

    Science.gov (United States)

    Bayat, Zeynab; Hassanshahian, Mehdi; Hesni, Majid Askari

    2015-12-15

    To date, little is known about existing relationships between mussels and bacteria in hydrocarbon-contaminated marine environments. The aim of this study is to find crude oil degrading bacteria in some mussels at the Persian Gulf. Twenty eight crude oil degrading bacteria were isolated from three mussels species collected from oil contaminated area at Persian Gulf. According to high growth and degradation of crude oil four strains were selected between 28 isolated strains for more study. Determination the nucleotide sequence of the gene encoding for 16S rRNA show that these isolated strains belong to: Shewanella algae isolate BHA1, Micrococcus luteus isolate BHA7, Pseudoalteromonas sp. isolate BHA8 and Shewanella haliotis isolate BHA35. The residual crude oil in culture medium was analysis by Gas Chromatography (GC). The results confirmed that these strains can degrade: 47.24%, 66.08%, 27.13% and 69.17% of crude oil respectively. These strains had high emulsification activity and biosurfactant production. Also, the effects of some factors on crude oil degradation by isolated strains were studied. The results show that the optimum concentration of crude oil was 2.5% and the best degradation take place at 12% of salinity. This research is the first reports on characterization of crude oil degrading bacteria from mussels at Persian Gulf and by using of these bacteria in the field the effect of oil pollution can be reduce on this marine environment.

  1. Isolation and characterization of endosulfan-degrading bacteria from contaminated agriculture soils

    Institute of Scientific and Technical Information of China (English)

    Mehdi Hassanshahian; Zahra Shahi

    2016-01-01

    Objective: To isolate and characterize endosulfan-degrading bacteria from Kerman pistachio orchards. Methods: Endosulfan-degrading bacteria were enriched in Bushnell-Hass medium. Identification and sequencing of prevalent degrading strains was performed by usingPCR based on amplifying16S rDNA. Results: The results showed that the soils of pistachio orchards have some degrading bacteria that are suitable for elimination of endosulfan from soils and the environment. Four endosulfan-degrading bacteria strains belong toAchromobacter xylosoxidans (strain EN3),Pseudomonas azotoformans (strain EN4),Pseudomonas brassicacearum (strain EN7) andPseudomonas thivervalensis (strain EN8), respectively. The best degrading strain (EN7), up to 100 mg/L, illustrated a good growth, whereas the growth was reduced in concentration higher than 100 mg/L. The results of gas chromatography confirmed the decomposition of organic pesticide by degrading-bacteria. Conclusions: By using these strains and other biological reclamation methods we can eliminate bio-environmental problems.

  2. Crude oil degradation by phosphate-solubilizing bacteria

    Digital Repository Service at National Institute of Oceanography (India)

    DeSouza, M.J.B.D.; Nair, S.; David, J.J.; Chandramohan, D.

    Phosphate-solubilizing bacteria were isolated from tropical areas around the Indian peninsula. Two of the isolates showed high phosphatase activity. The isolates were identified as Klebsiella pneumoniae and Bacillus pumilus, and they showed high...

  3. Naturally occurring phenanthrene degrading bacteria associated with seeds of various plant species.

    Science.gov (United States)

    Fernet, Jennifer L; Lawrence, John R; Germida, James J

    2016-01-01

    Seeds of 11 of 19 plant species tested yielded naturally occurring phenanthrene degrading bacteria when placed on phenanthrene impression plates. Seed associated phenanthrene degrading bacteria were mostly detected on caragana, Canada thistle, creeping red fescue, western wheatgrass, and tall wheat grass. Based on 16S rRNA analysis the most common bacteria isolated from these seeds were strains belonging to the genera Enterobacteria, Erwinia, Burkholderia, Pantoea, Pseudomonas, and Sphingomonas. These plants may provide an excellent source of pre-adapted bacterial-plant associations highly suitable for use in remediation of contaminated soil environments.

  4. Isolation and characterization of gasoline-degrading bacteria from gas station leaking-contaminated soils

    Institute of Scientific and Technical Information of China (English)

    LU Si-jin; WANG Hong-qi; YAO Zhi-hua

    2006-01-01

    The effects of culture conditions in vitro and biosurfactant detection were studied on bacterial strains capable of degrading gasoline from contaminated soils near gas station. The main results were summarized as follows. Three bacteria (strains Q10, Q14 and Q18) that were considered as efficiently degrading strains were isolated and identified as Pseudomonas sp., Flavobacterium sp. and Rhodococcus sp., respectively. The optimal growth conditions of three bacteria including pH, temperature and the concentration of gasoline were similar. The reduction in surface tension was observed with all the three bacteria, indicating the production of toluene, ethylbenzene and xylene (BTEX) could easily be degraded by the three isolates. The consortium was more effective than the individual cultures in degrading added gasoline, diesel oil, and BTEX. These results indicate that these strains have great potential for in situ remediation of soils contaminated by gas station leaking.

  5. Biostimulation Reveals Functional Redundancy of Anthracene-Degrading Bacteria in Polycyclic Aromatic Hydrocarbon-Contaminated Soil.

    Science.gov (United States)

    Dunlevy, Sage R; Singleton, David R; Aitken, Michael D

    2013-11-01

    Stable-isotope probing was previously used to identify bacterial anthracene-degraders in untreated soil from a former manufactured gas plant site. However, subsequent pyrosequence analyses of total bacterial communities and quantification of 16S rRNA genes indicated that relative abundances of the predominant anthracene-degrading bacteria (designated Anthracene Group 1) diminished as a result of biological treatment conditions in lab-scale, aerobic bioreactors. This study identified Alphaproteobacterial anthracene-degrading bacteria in bioreactor-treated soil which were dissimilar to those previously identified. The largest group of sequences was from the Alterythrobacter genus while other groups of sequences were associated with bacteria within the order Rhizobiales and the genus Bradyrhizobium. Conditions in the bioreactor enriched for organisms capable of degrading anthracene which were not the same as those identified as dominant degraders in the untreated soil. Further, these data suggest that identification of polycyclic aromatic hydrocarbon-degrading bacteria in contaminated but untreated soil may be a poor indicator of the most active degraders during biological treatment.

  6. Probing the diversity of chloromethane-degrading bacteria by comparative genomics and isotopic fractionation.

    Science.gov (United States)

    Nadalig, Thierry; Greule, Markus; Bringel, Françoise; Keppler, Frank; Vuilleumier, Stéphane

    2014-01-01

    Chloromethane (CH3Cl) is produced on earth by a variety of abiotic and biological processes. It is the most important halogenated trace gas in the atmosphere, where it contributes to ozone destruction. Current estimates of the global CH3Cl budget are uncertain and suggest that microorganisms might play a more important role in degrading atmospheric CH3Cl than previously thought. Its degradation by bacteria has been demonstrated in marine, terrestrial, and phyllospheric environments. Improving our knowledge of these degradation processes and their magnitude is thus highly relevant for a better understanding of the global budget of CH3Cl. The cmu pathway, for chloromethane utilisation, is the only microbial pathway for CH3Cl degradation elucidated so far, and was characterized in detail in aerobic methylotrophic Alphaproteobacteria. Here, we reveal the potential of using a two-pronged approach involving a combination of comparative genomics and isotopic fractionation during CH3Cl degradation to newly address the question of the diversity of chloromethane-degrading bacteria in the environment. Analysis of available bacterial genome sequences reveals that several bacteria not yet known to degrade CH3Cl contain part or all of the complement of cmu genes required for CH3Cl degradation. These organisms, unlike bacteria shown to grow with CH3Cl using the cmu pathway, are obligate anaerobes. On the other hand, analysis of the complete genome of the chloromethane-degrading bacterium Leisingera methylohalidivorans MB2 showed that this bacterium does not contain cmu genes. Isotope fractionation experiments with L. methylohalidivorans MB2 suggest that the unknown pathway used by this bacterium for growth with CH3Cl can be differentiated from the cmu pathway. This result opens the prospect that contributions from bacteria with the cmu and Leisingera-type pathways to the atmospheric CH3Cl budget may be teased apart in the future.

  7. Probing the diversity of chloromethane-degrading bacteria by comparative genomics and isotopic fractionation

    Directory of Open Access Journals (Sweden)

    Thierry eNADALIG

    2014-10-01

    Full Text Available Chloromethane (CH3Cl is produced on earth by a variety of abiotic and biological processes. It is the most important halogenated trace gas in the atmosphere, where it contributes to ozone destruction. Current estimates of the global CH3Cl budget are uncertain and suggest that microorganisms might play a more important role in degrading atmospheric CH3Cl than previously thought. Its degradation by bacteria has been demonstrated in marine, terrestrial and phyllospheric environments. Improving our knowledge of these degradation processes and its magnitude is thus highly relevant for a better understanding of the global budget of CH3Cl.The cmu pathway, for chloromethane utilisation, is the only microbial pathway for CH3Cl degradation elucidated so far, and was characterised in detail in aerobic methylotrophic Alphaproteobacteria. Here, we reveal the potential of using a two-pronged approach involving a combination of comparative genomics and isotopic fractionation during CH3Cl degradation to newly address the question of the diversity of chloromethane-degrading bacteria in the environment.Analysis of available bacterial genome sequences reveals that several bacteria not yet known to degrade CH3Cl contain part or all of the complement of cmu genes required for CH3Cl degradation. These organisms, unlike bacteria shown to grow with CH3Cl using the cmu pathway, are obligate anaerobes. On the other hand, analysis of the complete genome of the chloromethane-degrading bacterium Leisingera methylohalidivorans showed that this bacterium does not contain cmu genes. Isotope fractionation experiments with L. methylohalidivorans suggest that the unknown pathway used by this bacterium for growth with CH3Cl can be differentiated from the cmu pathway. This result opens the prospect that contributions from bacteria with the cmu and Leisingera-type pathways to the atmospheric CH3Cl budget may be teased apart in the future.

  8. [Isolation and Identification of Petroleum Degradation Bacteria and Interspecific Interactions Among Four Bacillus Strains].

    Science.gov (United States)

    Wang, Jia-nan; Shi, Yan-yun; Zheng, Li-yan; Wang, Zhe; Cai, Zhang; Liu, Jie

    2015-06-01

    Six petroleum-degrading strains were isolated from oil-contaminated soil at Dagang oil field and oil sewage on Bohai offshore drilling platform in Tianjin using enrichment culture and isolation method. The physiological biochemical test together with 16S rDNA sequencing analysis indicated that they belonged to Bacillus (S1, S2, S3, S4), Pseudomonas (W1) and Ochrobactrum (W2), respectively. The strain S3 had the maximum degradation rate of alkane (41.3%) and aromatic hydrocarbon (30.9%) among all isolated strains showing the better degradation efficiency by endogenous bacteria when compared to that by the exogenous bacteria. The four Bacillus strains were used to construct microbiome, thereafter subjected to petroleum degradation efficiency test and analyzed. The results showed that microbiome F3 consisting of S1 and S4 had the maximum degradation rates of alkane (50.5%) and aromatic hydrocarbon (54.0%), which were 69.9% and 156.1% higher than those by single bacterium, respectively. Furthermore, they were 22.1% and 74.6% respectively higher than those by the most optimal degradation bacterium S3. Microbiome F4 consisting of S2 and S3 had the minimum degradation rates of alkane (18.5%) and aromatic hydrocarbon (18.9%) which were 55.3% and 39.0% lower than the degradation rates of single bacterium, respectively. The results also demonstrated that there were both microbial synergy promotion and antagonism inhibition among bacteria of the same genus in the petroleum degradation period. Bacteria with close affinity in Bacillus genus displayed mainly promoted petroleum degradation effect.

  9. Isolation and preliminary characterization of a 3-chlorobenzoate degrading bacteria

    Institute of Scientific and Technical Information of China (English)

    QI Yun; ZHAO Lin; OJEKUNLE Z.Olusheyi; TAN Xin

    2007-01-01

    A study Was conducted to compare the diversity of 2-,3-,and 4-chlorobenzoate degraders in two pristine soils and one contaminated sewage sludge.These samples contained strikingly different populations of mono-chlorobenzoate degraders.Although fewer cultures were isolated in the uncontaminated soils than contaminated one,the ability of microbial populations to mineralize chlorobenzoate was widespread.The 3-and 4-chlorobenzoate degraders were more diverse than me 2-chlorobenzoate degraders.One of the strains isolated from the sewage sludge was obtained.Based on its phenotype.chemotaxonomic properties and 16S rRNA gene,the organism S-7was classified as Rhodococcus erythropolis.The strain can grow at temperature from 4 to 37℃.C.It can utilize several(halo)aromatic compounds.Moreover,strain S-7 can grow and use 3-chlorobenzoate as sole carbon source in a temperatures range of 10-30℃ with stoichiometric release of chloride ions.The psychrotolerant ability was significant for bioremediation in low temperature regions.Catechol and chlorocatechol 1,2-dioxygenase activities were present in cell free extracts of the strain,but no(chloro)catechol 2,3-dioxygenase activities was detected.Spectral conversion assays with extracts from R.erythropolis S-7 showed accumulation of a compound with a similar UV spectrum as chloro-cis,cis-muconate from 3-chlorobenzoate.On the basis of these results,we proposed that S-7 degraded 3-chlorobenzoate through the modified ortho-cleave pathway.

  10. Isolation and characterization of Fenitrothion-degrading bacteria from pestachio gardens in Kerman Provinance

    Directory of Open Access Journals (Sweden)

    Mehrnosh Ghafari

    2014-07-01

    Full Text Available   Introduction : Pesticides with complex structure have high persistence in ecosystem and biosphere. Pesticides have harmful effects on farmlands, human and natural resources.   Materials and methods: In this study for isolation of pesticide-degrading bacteria (Fenitrothion soil samples were collected from pistachio gardens in Kerman province. Collected soil samples were enriched in Bushnell Hass medium with this pesticide as only carbon and energy source. Isolated bacteria were identified by amplification of 16S rDNA gene by PCR and sequencing .   Results : In this study three Fenitrothion -degrading bacterial strains were isolated. These isolated bacteria were identified as: Pseudomonas fluorescens strain F1 ، Bacillus cereus strain F3 and pseudomonas aeruginosa strain F4 . The effects of pesticides concentration on each dominant bacterial strain were investigated. For Fenitrothion degrading bacterium (F4 strain growth continue until 100 ppm and then decreased. The result of Gas Chromatography (GC analysis confirmed the biodegradation ability of selected bacterial strains .   Discussion and conclusion : The results of this study demonstrated that there is a diversity of pesticide-degrading bacteria (Fenitrothion in soil ecosystem farmlands of Kerman province. It is seemed by application of these pesticide-degrading bacteria in farmlands and using bioremediation technique the ecosystem contamination of pesticide can be decreased.

  11. Comparative proteome analysis of butachlor-degrading bacteria

    Science.gov (United States)

    Wang, Jinhua; Lu, Yitong; Chen, Yingying

    2008-01-01

    A Pseudomonas putida strain, named ER1, was isolated from an agricultural soil and found to actively degrade the herbicide butachlor. The enzyme extracted from ER1 could degrade butachlor. Furthermore, incubation of ER1 in a medium containing 50 mg/kg of butachlor after 3 days resulted in the high butachlor-degrading enzyme activity of ER1. Response of ER1 to butachlor might be related to changes in protein composition at both quantitative and qualitative levels. Total proteins were extracted from control strain (incubated in the medium without butachlor) and the treated strain (incubated in the medium with butachlor). The proteins were separated by two-dimensional gel electrophoresis. Of the total number of ER1 protein, 11 spots were significantly changed under butachlor stress. Analysis by matrix-assisted laser desorption/ionization mass spectrometry and tandem mass spectrometry coupled with database searching allowed the function of some proteins which were similar to the hydrolases activity or oxidoreductase activity.

  12. Phytate degradation by fungi and bacteria that inhabit sawdust and coffee residue composts.

    Science.gov (United States)

    Fathallh Eida, Mohamed; Nagaoka, Toshinori; Wasaki, Jun; Kouno, Kenji

    2013-01-01

    Phytate is the primary source of organic phosphorus, but it cannot be directly utilized by plants and is strongly adsorbed by the soil, reducing bioavailability. Composting is a process used to improve the bioavailability of phytate in organic wastes through degradation by microorganisms. In this study, we aimed to investigate the phytate-degrading ability of fungi and bacteria that inhabit sawdust compost and coffee residue compost, and their contribution to the composting process. In the plate assay, the fungi that formed clear zones around their colonies belonged to the genera Mucor, Penicillium, Galactomyces, Coniochaeta, Aspergillus, and Fusarium, while the bacteria belonged to the genera Pseudomonas, Enterobacter, Chitinophaga, and Rahnella. Eight fungal isolates (genera Mucor, Penicillium, Galactomyces, and Coniochaeta) and four bacterial isolates (genera Pseudomonas, Enterobacter, and Rahnella) were selected to evaluate phytase activity in their liquid culture and their ability to degrade phytate in organic materials composed of mushroom media residue and rice bran. The selected fungi degraded phytate in organic materials to varying degrees. Penicillium isolates showed the highest degradation ability and Coniochaeta isolate exhibited relatively high degradation ability. The clear zone diameters of these fungal isolates displayed significantly positive and negative correlations with inorganic and phytate phosphorus contents in the organic materials after incubation, respectively; however, none of the selected bacteria reduced phytate phosphorus in organic materials. It is therefore possible that fungi are major contributors to phytate degradation during composting.

  13. Degradation of alkenones by aerobic heterotrophic bacteria: Selective or not ?

    Digital Repository Service at National Institute of Oceanography (India)

    Rontani, J-F.; Harji, R.; Guasco, S.; Prahl, F.G.; Volkman, J.K.; Bhosle, N.B.; Bonin, P.

    of alkenones by aerobic heterotrophic bacteria: selective or not? Jean-François Rontani a *, Ranjita Harji a,b , Sophie Guasco a , Fredrick G. Prahl c , John K. Volkman d , Narayan B. Bhosle b , Patricia Bonin a a Laboratoire de Microbiologie de..., Corvallis, OR 97331-5503, US. d CSIRO Marine and Atmospheric Research, GPO Box 1538, Hobart, Tasmania 7001, Australia * Corresponding author. Tel.: +33-4-91-82-96-51; fax: +33-4-91-82-96-41. E-mail address: jean-francois.rontani@com.univmed.fr (J...

  14. Infrared Cross-Sections of Nitro-Derivative Vapors: New Spectroscopic Signatures of Explosive Taggants and Degradation Products

    Science.gov (United States)

    Cuisset, Arnaud; Mouret, Gaël; Pirali, Olivier; Gruet, Sébastien; Piau, Gérard Pascal; Fournier, Gilles

    2015-06-01

    Classical explosives such as RDX or TNT exhibit a very low vapor pressure at room temperature and their detection in air requires very sensitive techniques with levels usually better than 1 ppb. To overcome this difficulty, it is not the explosive itself which is detected, but another compound more volatile present in the explosive. This volatile compound can exist naturally in the explosive due to the manufacturing process. For example, in the case of DiNitroToluene (DNT), the molecule is a degradation product of TNT and is required for its manufacture. Ortho-Mononitrotoluene (2-NT) and para-mononitrotoluene (4-NT) can be also used as detection taggants for explosive detection. In this study, using the exceptional properties of the SOLEIL synchrotron source, and adapted multipass-cells, gas phase Far-IR rovibrational spectra of different isomers of mononitrotoluene and dinitrotoluene have been investigated. Room temperature Far-IR cross-sections of the 3 isomer forms of mononitrotoluene have been determined for the lowest frequency vibrational bands located below 700 wn. Cross sections and their temperature dependences have been also measured in the Mid-IR using conventional FTIR spectroscopy probing the nitro-derivatives vapors in a heated multipass-cell. J. C. Oxley, J. L. Smith, W. Luo, J. Brady, Prop. Explos. Pyrotec. 34 (2009) 539-543 A. Cuisset, S. Gruet, O. Pirali, G. Mouret, Spectrochimica Acta Part A, 132 (2014) 838-845.

  15. Cultivation-independent identification of candidate dehalorespiring bacteria in tetrachloroethylene degradation.

    Science.gov (United States)

    Yamasaki, Shouhei; Nomura, Nobuhiko; Nakajima, Toshiaki; Uchiyama, Hiroo

    2012-07-17

    Tetrachloroethylene (PCE) is one of the major pollutants and is degraded by dissimilation by dehalorespiring bacteria. The dehalorespiring bacteria are anaerobic, and most cannot be cultured by conventional agar plating methods. Therefore, to identify the dehalorespiring bacteria that dissimilatively degrade PCE, a cultivation-independent method is required. To achieve accurate and detailed analysis of the bacteria, we developed a novel stable isotope probing (SIP) method. This technique involves 2 steps, namely, a labeling step, in which a labeled carbon source is incorporated into the sample's DNA, and an analysis step, in which the DNA is isolated, fractionated, and analyzed by polymerase chain reaction denaturing gradient gel electrophoresis (PCR-DGGE). Subsequently, 16S rRNA sequencing and phylogenetic analysis were performed to identify the bacteria. Initially, we examined the effectiveness of this method by using Dehalococcoides ethenogenes 195 consortium as a defined model system. The result indicated the method was able to correctly identify the dehalorespiring bacteria D. ethenogenes 195 from the consortium. Moreover, in an artificially contaminated microcosm experiment, we confirmed that the method was able to identify the indigenous dehalorespiring bacteria Dehalobacter sp. Thus, we concluded that this novel method was a feasible tool to identify dehalorespiring bacteria in natural environments.

  16. Influence of Environmental Stressors on the Physiology of Pollutant Degrading Bacteria

    DEFF Research Database (Denmark)

    Svenningsen, Nanna Bygvraa

    of model degrader bacteria to nutrient- and oxidative stress, two highly relevant stress scenarios in natural environments, and at evaluating the impact of these environmental stress conditions on catabolic gene expression. The results suggest that environmental bacteria, here represented by the toluene......Bacteria and other microorganisms play an important role for removal of pollutants released into the environment, either deliberately or accidentally. In particular, soils are reservoirs for microorganisms carrying the catalytic potential for breakdown of otherwise toxic and often recalcitrant...... to expression of catabolic genes. Hence, even though environmental bacteria are able to deal with many stressful situations, environmental stressors can be bottlenecks for pollutant degradation by influencing directly on the level of catabolic gene expression. Finally the study investigated whether findings...

  17. Direct Injection of Seawater for the Analysis of Nitroaromatic Explosives and their Degradation Products by Micellar Electrokinetic Chromatography

    Science.gov (United States)

    2010-01-01

    micellar electrokinetic chromatography Braden C. Giordanoa,∗, Dean S. Burgib, Greg E. Collinsa a Uanited States Naval Research Laboratory, Chemistry...threats to our coastal regions. Micellar electrokinetic chromatography (MEKC) has been demonstrated to be a useful analytical tool in the anal- ysis of...injection of seawater for the analysis of nitroaromatic explosives and their degradation products by micellar electrokinetic chromatography 5a. CONTRACT

  18. Aromatic compound degradation by iron reducing bacteria isolated from irrigated tropical paddy soils

    Institute of Scientific and Technical Information of China (English)

    LU Wenjing; WANG Hongtao; HUANG Changyong; W. Reichardt

    2008-01-01

    Forty-six candidate phenol/benzoate degrading-iron reducing bacteria were isolated from long term irrigated tropical paddy soils by enrichment procedures. Pure cultures and some prepared mixed cultures were examined for ferric oxide reduction and phenol/benzoate degradation. All the isolates were iron reducers, but only 56.5% could couple iron reduction to phenol and/or benzoate degradation, as evidenced by depletion of phenol and benzoate after one week incubation. Analysis of degradative capability using Biolog MT plates revealed that most of them could degrade other aromatic compounds such as ferulic acid, vanillic acid, and hydroxybenzoate. Mixed-cultures and soft samples displayed greater capacity for aromatic degradation and iron reduction than pure bacterial isolates, suggesting that these reactions may be coupled via a consortia-based mechanism in paddy soils.

  19. Degradation of Polycyclic Aromatic Hydrocarbons (PAHs) by Bacteria Isolated from Light Oil Polluted Soils

    Science.gov (United States)

    Ohnuma, T.; Suto, K.; Inoue, C.

    2007-03-01

    Polycyclic aromatic hydrocarbons (PAHs) have polluted soil and groundwater widely and for long term because of their low solubility at normal temperature. Several microorganisms, such as Pseudomonas sp., Sphigomonas sp., a white-rot fungus and so on, being able to decompose PAHs, have been isolated and researched. This study reported to investigate biodegradation of low molecule PAH by isolated bacteria from light oil polluted soil. 12 isolates were obtained from a light oil polluted soil using naphthalene, fluorene and anthracene as sole carbon source, of which 4 isolates grew with naphthalene, 4 isolates did with fluorene and 4 isolates did with anthracene. Among them 3 isolates showed the ability to degrade phenanthrene additionally. These phenanthrene degradation and growth rates were almost same as that of S. yanoikuyae (DSM6900), which is the typical bacteria of PAHs degrader. Therefore, the isolate seemed to have an expectation for PAHs degradation.

  20. Phagosomal degradation increases TLR access to bacterial ligands and enhances macrophage sensitivity to bacteria

    Science.gov (United States)

    Wolf, Andrea J.; Arruda, Andrea; Reyes, Christopher N.; Kaplan, Amber T.; Shimada, Takahiro; Shimada, Kenichi; Arditi, Moshe; Liu, George; Underhill, David M.

    2011-01-01

    Signaling by innate immune receptors initiates and orchestrates the overall immune responses to infection. Macrophage receptors recognizing pathogens can be broadly grouped into surface receptors and receptors restricted to intracellular compartments, such as phagosomes and the cytoplasm. There is an expectation that ingestion and degradation of microorganisms by phagocytes contributes to activation of intracellular innate receptors, although direct demonstrations of this are rare and many model ligands are studied in soluble form, outside of their microbial context. By comparing a wild-type strain of Staphylococcus aureus and a lysozyme-sensitive mutant, we have been able to directly address the role of degradation of live bacteria by mouse macrophages in determining the overall innate cellular inflammatory response. Our investigations revealed a biphasic response to S. aureus that consisted of an initial signal resulting from the engagement of surface TLR2, followed by a later, second wave on inflammatory gene induction. This second wave of inflammatory signaling was dependent on and correlated with the timing of bacterial degradation in phagosomes. We found that TLR2 signaling followed by TLR2/TLR9 signaling enhanced sensitivity to small numbers of bacteria. We further found that treating wild-type bacteria with the peptidoglycan synthesis-inhibiting antibiotic vancomycin made S. aureus more susceptible to degradation and resulted in increased inflammatory responses, similar to those observed for mutant degradation-sensitive bacteria. PMID:22031762

  1. Biotransformation of nitrobenzene by bacteria containing toluene degradative pathways

    Energy Technology Data Exchange (ETDEWEB)

    Haigler, B.E.; Spain, J.C. (Air Force Civil Engineering Support Agency, Tyndall AFB, FL (United States))

    1991-11-01

    Nonpolar nitroaromatic compounds have been considered resistant to attack by oxygenases because of the electron withdrawing properties of the nitro group. The authors have investigate the ability of seven bacterial strains containing toluene degradative pathways to oxidize nitrobenzene. Cultures were induced with toluene vapor prior to incubation with nitrobenzene, and products were identified by high-performance liquid chromatography and gas chromatography-mass spectrometry. Pseudomonas cepacia G4 and a strain of Pseudomonas harboring the TOL plasmid (pTN2) did not transform nitrobenzene. Cells of Pseudomonas putida F1 and Pseudomonas sp. strain JS150 converted nitrobenzene to 3-nitrocatechol. Transformation of nitrobenzene in the presence of {sup 18}O{sub 2} indicated that the reaction in JS150 involved the incorporation of both atoms of oxygen in the 3-nitrocatechol, which suggests a dioxygenase mechanism. P. putida 39/D, a mutant strain of P. putida F1, converted nitrobenzene to a compound tentatively identified as cis-1, 2-dihydroxy-3-nitrocyclohexa-3, 5-diene. This compound was rapidly converted to 3-nitrocatechol by cells of strain JS150. Cultures of Pseudomonas mendocina KR-1 converted nitrobenzene to a mixture of 3- and 4-nitrophenol (10 and 63%, respectively). Pseudomonas pickettii PKO1 converted nitrobenzene to 3- and 4-nitrocatechol via 3- and 4-nitrophenol. The nitrocatechols were slowly degraded to unidentified metabolites. Nitrobenzene did not serve as an inducer for the enzymes that catalyzed its oxidation.

  2. Phytate Degradation by Fungi and Bacteria that Inhabit Sawdust and Coffee Residue Composts

    OpenAIRE

    2012-01-01

    Phytate is the primary source of organic phosphorus, but it cannot be directly utilized by plants and is strongly adsorbed by the soil, reducing bioavailability. Composting is a process used to improve the bioavailability of phytate in organic wastes through degradation by microorganisms. In this study, we aimed to investigate the phytate-degrading ability of fungi and bacteria that inhabit sawdust compost and coffee residue compost, and their contribution to the composting process. In the pl...

  3. Exploring the microbiota dynamics related to vegetable biomasses degradation and study of lignocellulose-degrading bacteria for industrial biotechnological application

    Science.gov (United States)

    Ventorino, Valeria; Aliberti, Alberto; Faraco, Vincenza; Robertiello, Alessandro; Giacobbe, Simona; Ercolini, Danilo; Amore, Antonella; Fagnano, Massimo; Pepe, Olimpia

    2015-02-01

    The aims of this study were to evaluate the microbial diversity of different lignocellulosic biomasses during degradation under natural conditions and to isolate, select, characterise new well-adapted bacterial strains to detect potentially improved enzyme-producing bacteria. The microbiota of biomass piles of Arundo donax, Eucalyptus camaldulensis and Populus nigra were evaluated by high-throughput sequencing. A highly complex bacterial community was found, composed of ubiquitous bacteria, with the highest representation by the Actinobacteria, Proteobacteria, Bacteroidetes and Firmicutes phyla. The abundances of the major and minor taxa retrieved during the process were determined by the selective pressure produced by the lignocellulosic plant species and degradation conditions. Moreover, cellulolytic bacteria were isolated using differential substrates and screened for cellulase, cellobiase, xylanase, pectinase and ligninase activities. Forty strains that showed multienzymatic activity were selected and identified. The highest endo-cellulase activity was seen in Promicromonospora sukumoe CE86 and Isoptericola variabilis CA84, which were able to degrade cellulose, cellobiose and xylan. Sixty-two percent of bacterial strains tested exhibited high extracellular endo-1,4-ß-glucanase activity in liquid media. These approaches show that the microbiota of lignocellulosic biomasses can be considered an important source of bacterial strains to upgrade the feasibility of lignocellulose conversion for the `greener' technology of second-generation biofuels.

  4. Enzymatic degradation of collagen-guided tissue regeneration membranes by periodontal bacteria.

    Science.gov (United States)

    Sela, Michael N; Kohavi, David; Krausz, Emanuela; Steinberg, Doron; Rosen, Graciela

    2003-06-01

    Bacterial infection in the vicinity of guided tissue regeneration barrier membranes was shown to have a negative effect on the clinical outcomes of this increasingly used technique. Several oral and specifically periodontal bacteria were shown to adhere to such membranes in vivo and in vitro with a higher affinity to membranes constructed from collagen. The present study examined the role of periodontal bacteria and their enzymes in the degradation of commercially used collagen membranes. Degradation of two collagen membranes [Biomend (Calcitek, Colla-Tec Inc., Plainsboro, NJ) and Bio-Gide (Geistlich Biomaterials, Wolhousen, Switzerland)] labeled by fluorescein isothiocyanate was examined by measuring soluble fluorescence. Porphyromonas gingivalis, Treponema denticola and Actinobacillus actinomycetemcomitans and their enzymes were evaluated. Collagenase from Clostridium hystolyticum was used as a positive control. While whole cells of P. gingivalis were able to degrade both types of membranes, T. denticola could degrade Bio-Gide membranes only and A. actinomycetemcomitans whole cells could degrade none of the membranes. Fractionation of P. gingivalis cells revealed that cell membrane associated proteases were responsible for the degradation of the two collagen membranes. In T. denticola, the purified major phenylalanine protease was found to be responsible for the degradation of Bio-Gide membranes. These results suggest that proteolytic bacterial enzymes may take part in the degradation of collagen barrier membranes used for guided tissue regeneration.

  5. POTENCY OF LIGNOCELLULOSE DEGRADING BACTERIA ISOLATED FROM BUFFALO AND HORSE GASTROINTESTINAL TRACT AND ELEPHANT DUNG FOR FEED FIBER DEGRADATION

    Directory of Open Access Journals (Sweden)

    A. Wahyudi

    2014-10-01

    Full Text Available Lignin is limiting factor for cellulose and hemicellulose degradation in rumen. Isolation andselection bacteria from buffalo and horse gastrointestinal tract and elephant dung could be foundbacteria that have superiority to degrade lignin, xylan, and cellulose. Those animals were chosenbecause they were herbivores that consume low quality crude fiber as their main energy sources.Lignocellulose degrading bacteria were isolated by Hungate selective media, by using lignin (tannicacid, xylan, and cellulose as selective substrates. The morphological identification used an enrichmentmedia by measuring color, colony size, diffusion zone, clear zone, and biochemical identification usingproduction of ligninase, xylanase, and cellulase enzymes. The best lignocellulose degrading bacteriathen was determined by the morphological and biochemical character. This study showed thatlignocellulose degrading bacteria could be found in gastrointestinal tract of buffalo and horse, andelephant dung. Highest number colony was found in samples from buffalo's colon (376, followed byhorse's cecum (203, elephant’s dung (46, buffalo’s cecum (23, buffalo's rumen (9 and horse’s colon(7. The highest isolates activity of lignolytic, xylanolytic, and cellulolytic were reached by buffalo’scecum (7.64, horse's cecum (6.27, and buffalo’s colon (2.48. Meanwhile the highest enzymesproductivities were: buffalo’s cecum (0.0400 µmol, horse’s cecum (1.3912 µmol and buffalo’s colon(0.1971 µmol. Based on morphologycal character and biochemical test, it could be concluded thatlignolytic from buffalo’s cecum, xylanolytic from horse’s cecum, and cellulolytic from buffalo’s colonwere the superior isolates and they were 99% analyzed as Enterococcus casseliflavus/gallinarumspecies.

  6. Catabolism and biotechnological applications of cholesterol degrading bacteria.

    Science.gov (United States)

    García, J L; Uhía, I; Galán, B

    2012-11-01

    Cholesterol is a steroid commonly found in nature with a great relevance in biology, medicine and chemistry, playing an essential role as a structural component of animal cell membranes. The ubiquity of cholesterol in the environment has made it a reference biomarker for environmental pollution analysis and a common carbon source for different microorganisms, some of them being important pathogens such as Mycobacterium tuberculosis. This work revises the accumulated biochemical and genetic knowledge on the bacterial pathways that degrade or transform this molecule, given that the characterization of cholesterol metabolism would contribute not only to understand its role in tuberculosis but also to develop new biotechnological processes that use this and other related molecules as starting or target materials.

  7. Molecular screening of wine lactic acid bacteria degrading hydroxycinnamic acids.

    Science.gov (United States)

    de las Rivas, Blanca; Rodríguez, Héctor; Curiel, José Antonio; Landete, José María; Muñoz, Rosario

    2009-01-28

    The potential to produce volatile phenols from hydroxycinnamic acids was investigated for lactic acid bacteria (LAB) isolated from Spanish grape must and wine. A PCR assay was developed for the detection of LAB that potentially produce volatile phenols. Synthetic degenerate oligonucleotides for the specific detection of the pdc gene encoding a phenolic acid decarboxylase were designed. The pdc PCR assay amplifies a 321 bp DNA fragment from phenolic acid decarboxylase. The pdc PCR method was applied to 85 strains belonging to the 6 main wine LAB species. Lactobacillus plantarum, Lactobacillus brevis, and Pediococcus pentosaceus strains produce a positive response in the pdc PCR assay, whereas Oenococcus oeni, Lactobacillus hilgardii, and Leuconostoc mesenteroides strains did not produce the expected PCR product. The production of vinyl and ethyl derivatives from hydroxycinnamic acids in culture media was determined by high-performance liquid chromatography. A relationship was found between pdc PCR amplification and volatile phenol production, so that the LAB strains that gave a positive pdc PCR response produce volatile phenols, whereas strains that did not produce a PCR amplicon did not produce volatile phenols. The proposed method could be useful for a preliminary identification of LAB strains able to produce volatile phenols in wine.

  8. Hydrolytic bacteria in mesophilic and thermophilic degradation of plant biomass

    Energy Technology Data Exchange (ETDEWEB)

    Zverlov, Vladimir V.; Hiegl, Wolfgang; Koeck, Daniela E.; Koellmeier, Tanja; Schwarz, Wolfgang H. [Department of Microbiology, Technische Universitaet Muenchen, Freising-Weihenstephan (Germany); Kellermann, Josef [Max Planck Institute for Biochemistry, Am Klopferspitz, Martinsried (Germany)

    2010-12-15

    Adding plant biomass to a biogas reactor, hydrolysis is the first reaction step in the chain of biological events towards methane production. Maize silage was used to enrich efficient hydrolytic bacterial consortia from natural environments under conditions imitating those in a biogas plant. At 55-60 C a more efficient hydrolyzing culture could be isolated than at 37 C. The composition of the optimal thermophilic bacterial consortium was revealed by sequencing clones from a 16S rRNA gene library. A modified PCR-RFLP pre-screening method was used to group the clones. Pure anaerobic cultures were isolated. 70% of the isolates were related to Clostridium thermocellum. A new culture-independent method for identification of cellulolytic enzymes was developed using the isolation of cellulose-binding proteins. MALDI-TOF/TOF analysis and end-sequencing of peptides from prominent protein bands revealed cellulases from the cellulosome of C. thermocellum and from a major cellulase of Clostridium stercorarium. A combined culture of C. thermocellum and C. stercorarium was shown to excellently degrade maize silage. A spore preparation method suitable for inoculation of maize silage and optimal hydrolysis was developed for the thermophilic bacterial consortium. This method allows for concentration and long-term storage of the mixed culture for instance for inoculation of biogas fermenters. (Copyright copyright 2010 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  9. Degradation of neohesperidin dihydrochalcone by human intestinal bacteria.

    Science.gov (United States)

    Braune, Annett; Engst, Wolfram; Blaut, Michael

    2005-03-09

    The degradation of neohesperidin dihydrochalcone by human intestinal microbiota was studied in vitro. Human fecal slurries converted neohesperidin dihydrochalcone anoxically to 3-(3-hydroxy-4-methoxyphenyl)propionic acid or 3-(3,4-dihydroxyphenyl)propionic acid. Two transient intermediates were identified as hesperetin dihydrochalcone 4'-beta-d-glucoside and hesperetin dihydrochalcone. These metabolites suggest that neohesperidin dihydrochalcone is first deglycosylated to hesperetin dihydrochalcone 4'-beta-d-glucoside and subsequently to the aglycon hesperetin dihydrochalcone. The latter is hydrolyzed to the corresponding 3-(3-hydroxy-4-methoxyphenyl)propionic acid and probably phloroglucinol. Eubacterium ramulus and Clostridium orbiscindens were not capable of converting neohesperidin dihydrochalcone. However, hesperetin dihydrochalcone 4'-beta-d-glucoside was converted by E. ramulus to hesperetin dihydrochalcone and further to 3-(3-hydroxy-4-methoxyphenyl)propionic acid, but not by C. orbiscindens. In contrast, hesperetin dihydrochalcone was cleaved to 3-(3-hydroxy-4-methoxyphenyl)propionic acid by both species. The latter reaction was shown to be catalyzed by the phloretin hydrolase from E. ramulus.

  10. SIP metagenomics identifies uncultivated Methylophilaceae as dimethylsulphide degrading bacteria in soil and lake sediment.

    Science.gov (United States)

    Eyice, Özge; Namura, Motonobu; Chen, Yin; Mead, Andrew; Samavedam, Siva; Schäfer, Hendrik

    2015-11-01

    Dimethylsulphide (DMS) has an important role in the global sulphur cycle and atmospheric chemistry. Microorganisms using DMS as sole carbon, sulphur or energy source, contribute to the cycling of DMS in a wide variety of ecosystems. The diversity of microbial populations degrading DMS in terrestrial environments is poorly understood. Based on cultivation studies, a wide range of bacteria isolated from terrestrial ecosystems were shown to be able to degrade DMS, yet it remains unknown whether any of these have important roles in situ. In this study, we identified bacteria using DMS as a carbon and energy source in terrestrial environments, an agricultural soil and a lake sediment, by DNA stable isotope probing (SIP). Microbial communities involved in DMS degradation were analysed by denaturing gradient gel electrophoresis, high-throughput sequencing of SIP gradient fractions and metagenomic sequencing of phi29-amplified community DNA. Labelling patterns of time course SIP experiments identified members of the Methylophilaceae family, not previously implicated in DMS degradation, as dominant DMS-degrading populations in soil and lake sediment. Thiobacillus spp. were also detected in (13)C-DNA from SIP incubations. Metagenomic sequencing also suggested involvement of Methylophilaceae in DMS degradation and further indicated shifts in the functional profile of the DMS-assimilating communities in line with methylotrophy and oxidation of inorganic sulphur compounds. Overall, these data suggest that unlike in the marine environment where gammaproteobacterial populations were identified by SIP as DMS degraders, betaproteobacterial Methylophilaceae may have a key role in DMS cycling in terrestrial environments.

  11. Phylogenetic affiliation of soil bacteria that degrade aliphatic polyesters available commercially as biodegradable plastics.

    Science.gov (United States)

    Suyama, T; Tokiwa, Y; Ouichanpagdee, P; Kanagawa, T; Kamagata, Y

    1998-12-01

    Thirty-nine morphologically different soil bacteria capable of degrading poly(beta-hydroxyalkanoate), poly(epsilon-caprolactone), poly(hexamethylene carbonate), or poly(tetramethylene succinate) were isolated. Their phylogenetic positions were determined by 16S ribosomal DNA sequencing, and all of them fell into the classes Firmicutes and Proteobacteria. Determinations of substrate utilization revealed characteristic patterns of substrate specificities.

  12. In vitro degradation and fermentation of three dietary fiber sources by human colonic bacteria

    Science.gov (United States)

    Although clinical benefits of dietary fiber supplementation seem to depend in part on the extent of fiber degradation and fermentation by colonic bacteria, little is known about the effect of the type of supplemented fiber on bacterial metabolism. In an experiment using a non-adapted human bacterial...

  13. Capacity of Aromatic Compound Degradation by Bacteria from Amazon Dark Earth

    Directory of Open Access Journals (Sweden)

    Fernanda Mancini Nakamura

    2014-06-01

    Full Text Available Amazon dark earth (ADE is known for its high organic matter content, biochar concentration and microbial diversity. The biochar amount suggests the existence of microorganisms capable of degrading aromatic hydrocarbons (AHs. In an effort to investigate the influence of bacteria on the resilience and fertility of these soils, we enriched five ADE soils with naphthalene and phenanthrene, and biodegradation assays with phenanthrene and diesel oil were carried out, as well. After DNA extraction, amplification and sequencing of the 16S rRNA bacterial gene, we identified 148 isolates as the Proteobacteria, Firmicutes and Actinobacteria phyla comprising genera closely related to AHs biodegradation. We obtained 128 isolates that degrade diesel oil and 115 isolates that degrade phenanthrene. Some isolates were successful in degrading both substrates within 2 h. In conclusion, the obtained isolates from ADE have degrading aromatic compound activity, and perhaps, the biochar content has a high influence on this.

  14. Degradation behaviors of nonylphenol ethoxylates by isolated bacteria using improved isolation method

    Institute of Scientific and Technical Information of China (English)

    GU Xin; ZHANG Yu; ZHANG Jing; YANG Min; Hideyuki Tamaki; Yoichi Kamagata

    2008-01-01

    Nonylphenol ethoxylate (NPEO)-degrading bacteria were isolated from activated sludge using an improved isolation method, and the corresponding degradation behaviours were investigated. Eight NPEO-degrading strains distributed in genera Pseudomonas, Sphingomonas, Sphingobium, Cupriavidus, Ralstonia, Achromobacter, and Staphylococcus were acquired. The latter five genera have never been reported for the degradation of NPEOs. Four degradation patterns were observed for the eight pure strains. In pattern A, NPEOs were converted to short-chain NPEOs and carboxylated products, while in pattern B, lower ethoxylated oligomers appeared. Nonylphenol monoethoxylate was the main product in pattern C, while in pattern D ethoxylated units was oxidized but not shortened. Pattern C and D have not yet been reported.

  15. Biogenic amines degradation by malolactic bacteria: towards a potential application in wine

    Directory of Open Access Journals (Sweden)

    Vittorio eCapozzi

    2012-04-01

    Full Text Available Biogenic amines in wine represent a toxicological risk for the health of the consumer, with several trade implications. In this study 26 strains of Lactobacillus plantarum were analysed for their ability to degrade biogenic amines commonly found during wine fermentation. Two strains of L. plantarum were selected in reason of their ability to degrade putrescine and tyramine. The degradation was assessed in vitro, both in presence of the biogenic amines and in presence of the specific chemical precursor and of producer bacteria. The two L. plantarum biotypes were found capable to work synergically. In addition, the survival in wine-like medium and the aptitude to degrade malic acid after alcoholic fermentation of the selected L. plantarum strains was analysed. Our results suggest the potential application of wine L. plantarum strains to design malolactic starter cultures able to degrade biogenic amines in wine.

  16. Petroleum Hydrocarbon Degradation Potential of Soil Bacteria Native to the Yellow River Delta

    Institute of Scientific and Technical Information of China (English)

    WANG Zhen-Yu; GAO Dong-Mei; LI Feng-Min; ZHAO Jian; XIN Yuan-Zheng; S.SIMKINS; XING Bao-Shan

    2008-01-01

    The bioremediation potential of bacteria indigenous to soils of the Yellow River Delta in China was evaluated as a treatment option for soil remediation. Petroleum hydrocarbon degraders were isolated from contaminated soil samples from the Yellow River Delta. Four microbial communities and eight isolates were obtained. The optimal temperature, salinity, pH, and the ratios of C, N, and P (C:N:P) for the maximum biodegradation of diesel oil, crude oil, n-alkanes, and polyaromatic hydrocarbons by ndigenous bacteria were determined, and the kinetics changes in microbial communities were monitored. In general, the mixed microbial consortia demonstrated wider catabolic versatility and faster overall rate of hydrocarbon degradation than individual isolates. Our experimental results demonstrated the feasibility of biodegradation of petroleum hydrocarbon by indigenous bacteria for oil remediation in the Yellow River Delta.

  17. Application of fluorescent antibody and enzyme-linked immunosorbent assays for TCE and PAH degrading bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Brigmon, R.L.; Franck, M.; Brey, J.; Scott, D.; Lanclos, K.; Fliermans, C.

    1996-07-01

    Historically, methods used to identify methanotrophic and polyaromatic hydrocarbon-degrading (PAH) bacteria in environmental samples have been inadequate because isolation and identification procedures are time-consuming and often fail to separate specific bacteria from other environmental microorganisms. Methanotrophic bacteria have been isolated and characterized from TCE-contaminated soils (Bowman et al. 1993; Fliermans et al., 1988). Fliermans et al., (1988) and others demonstrated that cultures enriched with methane and propane could cometabolically degrade a wide variety of chlorinated aliphatic hydrocarbons including ethylene; 1,2-cisdichloroethylene (c-DCE); 1,2-trans-dichloroethylene (t-DCE); vinyl chloride (VC); toluene; phenol and cresol. Characterization of select microorganisms in the natural setting is important for the evaluation of bioremediation potential and its effectiveness. This realization has necessitated techniques that are selective, sensitive and easily applicable to soils, sediments, and groundwater (Fliermans, et al., 1994). Additionally these techniques can identify and quantify microbial types in situ in real time

  18. Marine oil degrading bacteria related to oil inputs and surface currents in the western Caribbean Sea

    Energy Technology Data Exchange (ETDEWEB)

    Lizarraga-Partida, M.L.; Vicuna, F.B.I.; Chang, I.W. (Centro de Investigacion Cientifica y de Educacion Superior de Ensenada (CICESE), Ensenada (Mexico))

    1990-01-01

    The distribution of oil degrading bacteria (ODB) and its ratios to viable heterotrophic bacteria (CFU) and direct counts (AODC) were examined in relation to the surface currents of the western Caribbean Sea. High ODB/CFU and ODB/AODC ratios were found, suggesting that chronic sources of hydrocarbons in the region may have a larger impact than those in the southern Gulf of Mexico, where previous studies have been performed. It was concluded that, in western Caribbean waters, the distribution of oil degrading bacteria, or its ratios to CFU or AODC, could be useful indicators of chronic oil inputs originating at the east of the Caribbean Sea, as well as their motions afterwards. (author).

  19. [Isolation and identification of degradation bacteria Enterobacter aerogenes for pyrethriods pesticide residues and its degradation characteristics].

    Science.gov (United States)

    Liao, Min; Zhang, Hai-jun; Xie, Xiao-mei

    2009-08-15

    By incubation experiment, the bacterial strain labeled as M6R9 was isolated from the tame sludge in water course of Pesticide Factory of Hangzhou, and was identified as Enterobacter aerogenes, which had highly efficient degradation for Bifenthrin, Fenpropathrin and Cypermethrin. By investigating the physiological characteristics of the strain, the results show that the bacterium is a gram-negative aerobe bacilli, size is (0.8-1.9) microm x (0.5-1.0) microm, and is capable of utilizing Bifenthrin, Fenpropathrin and Cypermethrin as sole carbon source. Under the condition of ventilation, (25-30) degrees C, inoculated amount at D(415 nm) 0.2, pH 7.0, pesticide concentration 100 mg x L(-1) and vibrational speed 180 r x min(-1), the degradation efficiencies to Bifenthrin, Fenpropathrin and Cypermethrin are the highest by strain M6R9. Under such condition, in the mixture culture medium with 100 mg x L(-1) Bifenthrin, Fenpropathrin and Cypermethrin, the degradation ratios are 55.74%, 55.11% and 55.96% after culturing 3 d, respectively, the degradation processes are fitted for first-order kinetic equation and the half lives (t(1/2)) are 65.4,70.7 and 68.6 h respectively. The degradation ability of Enterobacter aerogenes M6R9 on Bifenthrin, Fenpropathrin and Cypermethrin is positively correlated to inoculated amount,vibrational speed and ventilation.

  20. Preliminary study on PAH degradation by bacteria from contaminated sediments in Xiamen Western Sea, Fujian, China

    Institute of Scientific and Technical Information of China (English)

    MASKAOUI Khalid; ZHENG Tianling; HONG Huasheng; YU Zhiming; YUAN Jianjun; HU Zhong

    2004-01-01

    In order to estimate the biodegradation of three polycyclic aromatic hydrocarbons (PAHs) compounds, bacterial strains were isolated from marine sediments in three heavily contaminated sites (Yuandang Lake, Dongdu Port and Aquacultural zones in Maluan Bay) in Xiamen Western Sea. The results show three bacterial strains, which used pyrene as the sole carbon source, were identified as strains of Aureobacterium sp., Arthrobacter sp., Rhodococcus sp. The PAH-degrading bacteria isolated had a strong ability to degrade phenanhrene, fluoranthene and pyrene at different degradation rates. The highest degradation rate was observed when three PAH compounds were mixed with an individual strain in the medium. The three PAHs were degraded after one week with a degradation rate of 89.94 % for phenanthrene and 93.4 % for both of fluoranthene and pyrene. In addition, after 25 days of incubation, the degradation rate was 99.98 % for phenanthrene and 99.97 % for both of fluoranthene and pyrene. Optical density was measured to estimate bacterial growth during the degradation of PAHs. Highest levels of bacterial growth were observed with a three PAH mixture in the culture, suggesting that the concentration of PAHs influenced bacterial growth and the highest levels of degradation for most series were detected after one week of incubation.

  1. Preliminary study on PAH degradation by bacteria from contaminated sediments in Xiamen Western Sea, Fujian, China

    Science.gov (United States)

    Khalid, Maskaoui; Zheng, Tianling; Hong, Huasheng; Yu, Zhiming; Yuan, Jianjun; Hu, Zhong

    2004-12-01

    In order to estimate the biodegradation of three polycyclic aromatic hydrocarbons (PAHs) compounds, bacterial strains were isolated from marine sediments in three heavily contaminated sites (Yuandang Lake, Dongdu Port and Aquacultural zones in Maluan Bay) in Xiamen Western Sea. The results show three bacterial strains, which used pyrene as the sole carbon source, were identified as strains of Aureobacterium sp., Arthrobacter sp., Rhodococcus sp. The PAH-degrading bacteria isolated had a strong ability to degrade phenanhrene, fluoranthene and pyrene at different degradation rates. The highest degradation rate was observed when three PAH compounds were mixed with an individual strain in the medium. The three PAHs were degraded after one week with a degradation rate of 89.94% for phenanthrene and 93.4% for both of fluoranthene and pyrene. In addition, after 25 days of incubation, the degradation rate was 99.98% for phenanthrene and 99.97% for both of fluoranthene and pyrene. Optical density was measured to estimate bacterial growth during the degradation of PAHs. Highest levels of bacterial growth were observed with a three PAH mixture in the culture, suggesting that the concentration of PAHs influenced bacterial growth and the highest levels of degradation for most series were detected after one week of incubation.

  2. Isolation and characterization of diesel degrading bacteria, Sphingomonas sp. and Acinetobacter junii from petroleum contaminated soil

    Science.gov (United States)

    Zhang, Qiuzhuo; Wang, Duanchao; Li, Mengmeng; Xiang, Wei-Ning; Achal, Varenyam

    2014-03-01

    Two indigenous bacteria of petroleum contaminated soil were characterized to utilize diesel fuel as the sole carbon and energy sources in this work. 16S rRNA gene sequence analysis identified these bacteria as Sphingomonas sp. and Acinetobacter junii. The ability to degrade diesel fuel has been demonstrated for the first time by these isolates. The results of IR analyses showed that Sphingomonas sp. VA1 and A. junii VA2 degraded up to 82.6% and 75.8% of applied diesel over 15 days, respectively. In addition, Sphingomonas sp. VA1 possessed the higher cellular hydrophobicities of 94% for diesel compared to 81% by A. junii VA2. The isolates Sphingomonas sp. VA1 and A. junii VA2 exhibited 24% and 18%, respectively emulsification activity. This study reports two new diesel degrading bacterial species, which can be effectively used for bioremediation of petroleum contaminated sites.

  3. Ecological dynamics of toxic Microcystis spp. and microcystin-degrading bacteria in Dianchi Lake, China.

    Science.gov (United States)

    Zhu, Lin; Wu, Yanlong; Song, Lirong; Gan, Nanqin

    2014-03-01

    Toxic cyanobacterial blooms directly threaten both human safety and the ecosystem of surface waters. The widespread occurrence of these organisms, coupled with the tumor-promoting properties of the microcystin toxins that they produce, demands action to mitigate their potential impacts and, thus, a robust understanding of their ecological dynamics. In the present work, the abundance of toxic Microcystis spp. and microcystin (MC)-degrading bacteria in Dianchi Lake, located in Yunnan Province, China, was studied using quantitative PCR. Samples were taken at monthly intervals from June 2010 to December 2011 at three sampling stations within this freshwater lake. Results revealed that variation in the abundance of both total Microcystis spp. and toxic Microcystis spp. exhibited similar trends during the period of the algal bloom, including the reinvasion, pelagic growth, sedimentation, and overwintering periods, and that the proportion of toxic Microcystis was highest during the bloom and lowest in winter. Importantly, we observed that peaks in mlrA gene copy numbers of MC-degrading bacteria occurred in the months following observed peaks in MC concentrations. To understand this phenomenon, we added MCs to the MC-degrading bacteria (designated strains HW and SW in this study) and found that MCs significantly enhanced mlrA gene copy numbers over the number for the control by a factor of 5.2 for the microcystin-RR treatment and a factor of 3.7 for the microcystin-LR treatment. These results indicate that toxic Microcystis and MC-degrading bacteria exert both direct and indirect effects on each other and that MC-degrading bacteria also mediate a shift from toxic to nontoxic populations of Microcystis.

  4. DETECTION OF PHENOL DEGRADING BACTERIA AND PSEUDOMONAS PUTIDA IN ACTIVATED SLUDGE BY POLYMERASE CHAIN REACTION

    Directory of Open Access Journals (Sweden)

    H. Movahedyan ، H. Khorsandi ، R. Salehi ، M. Nikaeen

    2009-04-01

    Full Text Available Phenol is one of the organic pollutants in various industrial wastewaters especially petrochemical and oil refining. Biological treatment is one of the considerable choices for removing of phenol present in these wastewaters. Identification of effective microbial species is considered as one of the important priorities for production of the biomass in order to achieve desirable kinetic of biological reactions. Basic purpose of this research is identification of phenol-degrading Pseudomonas Putida in activated sludge by polymerase chain reaction (PCR that has high speed and specificity. In this research, 10 various colonies of phenol-degrading bacteria were isolated from municipal activated sludge and the rate of phenol removal and growth rate of these bacteria were assessed in different concentrations of phenol (200 – 900 mg/L. Confirmation of the largest subunit of multicomponent phenol hydroxylase (LmPH gene and gene coding the N fragment in Pseudomonas Putida-derived methyl phenol operon (DmpN gene through PCR were used for general identification of phenol-degrading bacteria and Pseudomonas Putida, respectively. Presence of a 600 bp (base pairs bond in all of isolated strains indicated that they contain phenol hydroxylase gene. 6 of 10 isolated bacteria were Pseudomonas Putida because they produced a 199 bp PCR product by DmpN primers. According to PCR results in this study, the best phenol-degrading bacteria that can utilize 500 – 600 mg/L phenol completely after 48 hours incubation, belong to Pseudomonas Putida strains. It is clear that use of isolated bacteria can lead to considerable decrease of treatment time as well as promotion of phenol removal rate.

  5. Novel diesel-oil-degrading bacteria and fungi from the Ecuadorian Amazon rainforest.

    Science.gov (United States)

    Maddela, N R; Masabanda, M; Leiva-Mora, M

    2015-01-01

    Isolating new diesel-oil-degrading microorganisms from crude-oil contaminated sites and evaluating their degradation capacities are vitally important in the remediation of oil-polluted environments and crude-oil exploitation. In this research, new hydrocarbon-degrading bacteria and fungi were isolated from the crude-oil contaminated soil of the oil-fields in the Amazon rainforest of north-east Ecuador by using a soil enrichment technique. Degradation analysis was tracked by gas chromatography and a flame ionization detector. Under laboratory conditions, maximum degradability of the total n-alkanes reached up to 77.34 and 62.62 removal ratios after 30 days of incubation for the evaporated diesel oil by fungi (isolate-1) and bacteria (isolate-1), respectively. The 16S/18S rDNA sequence analysis indicated that the microorganisms were most closely (99-100%) related to Bacillus cereus (isolate-1), Bacillus thuringiensis (isolate-2), Geomyces pannorum (isolate-1), and Geomyces sp. (isolate-2). Therefore, these strains enable the degradation of hydrocarbons as the sole carbon source, and these findings will benefit these strains in the remediation of oil-polluted environments and oil exploitation.

  6. Bacteria and fungi can contribute to nutrients bioavailability and aggregate formation in degraded soils.

    Science.gov (United States)

    Rashid, Muhammad Imtiaz; Mujawar, Liyakat Hamid; Shahzad, Tanvir; Almeelbi, Talal; Ismail, Iqbal M I; Oves, Mohammad

    2016-02-01

    Intensive agricultural practices and cultivation of exhaustive crops has deteriorated soil fertility and its quality in agroecosystems. According to an estimate, such practices will convert 30% of the total world cultivated soil into degraded land by 2020. Soil structure and fertility loss are one of the main causes of soil degradation. They are also considered as a major threat to crop production and food security for future generations. Implementing safe and environmental friendly technology would be viable solution for achieving sustainable restoration of degraded soils. Bacterial and fungal inocula have a potential to reinstate the fertility of degraded land through various processes. These microorganisms increase the nutrient bioavailability through nitrogen fixation and mobilization of key nutrients (phosphorus, potassium and iron) to the crop plants while remediate soil structure by improving its aggregation and stability. Success rate of such inocula under field conditions depends on their antagonistic or synergistic interaction with indigenous microbes or their inoculation with organic fertilizers. Co-inoculation of bacteria and fungi with or without organic fertilizer are more beneficial for reinstating the soil fertility and organic matter content than single inoculum. Such factors are of great importance when considering bacteria and fungi inocula for restoration of degraded soils. The overview of presented mechanisms and interactions will help agriculturists in planning sustainable management strategy for reinstating the fertility of degraded soil and assist them in reducing the negative impact of artificial fertilizers on our environment.

  7. Community Analysis and Recovery of Phenol-degrading Bacteria from Drinking Water Biofilters.

    Science.gov (United States)

    Gu, Qihui; Wu, Qingping; Zhang, Jumei; Guo, Weipeng; Wu, Huiqing; Sun, Ming

    2016-01-01

    Phenol is a ubiquitous organic contaminant in drinking water. Biodegradation plays an important role in the elimination of phenol pollution in the environment, but the information about phenol removal by drinking water biofilters is still lacking. Herein, we study an acclimated bacterial community that can degrade over 80% of 300 mg/L phenol within 3 days. PCR detection of genotypes involved in bacterial phenol degradation revealed that the degradation pathways contained the initial oxidative attack by phenol hydroxylase, and subsequent ring fission by catechol 1,2-dioxygenase. Based on the PCR denatured gradient gel electrophoresis (PCR-DGGE) profiles of bacteria from biological activated carbon (BAC), the predominant bacteria in drinking water biofilters including Delftia sp., Achromobacter sp., and Agrobacterium sp., which together comprised up to 50% of the total microorganisms. In addition, a shift in bacterial community structure was observed during phenol biodegradation. Furthermore, the most effective phenol-degrading strain DW-1 that correspond to the main band in denaturing gradient gel electrophoresis (DGGE) profile was isolated and identified as Acinetobacter sp., according to phylogenetic analyses of the 16S ribosomal ribonucleic acid (rRNA) gene sequences. The strain DW-1 also produced the most important enzyme, phenol hydroxylase, and it also exhibited a good ability to degrade phenol when immobilized on granular active carbon (GAC). This study indicates that the enrichment culture has great potential application for treatment of phenol-polluted drinking water sources, and the indigenous phenol-degrading microorganism could recover from drinking water biofilters as an efficient resource for phenol removal. Therefore, the aim of this study is to draw attention to recover native phenol-degrading bacteria from drinking water biofilters, and use these native microorganisms as phenolic water remediation in drinking water sources.

  8. Community analysis and recovery of phenol-degrading bacteria from drinking water biofilters

    Directory of Open Access Journals (Sweden)

    Qihui eGu

    2016-04-01

    Full Text Available Phenol is a ubiquitous organic contaminant in drinking water. Biodegradation plays an important role in the elimination of phenol pollution in the environment, but the information about phenol removal by drinking water biofilters is still lacking. Herein, we study an acclimated bacterial community that can degrade over 80% of 300 mg/L phenol within 3 d. PCR detection of genotypes involved in bacterial phenol degradation revealed that the degradation pathways contained the initial oxidative attack by phenol hydroxylase, and subsequent ring fission by catechol 1,2-dioxygenase. Based on the PCR denatured gradient gel electrophoresis (PCR-DGGE profiles of bacteria from biological activated carbon (BAC, the predominant bacteria in drinking water biofilters including Delftia sp., Achromobacter sp., and Agrobacterium sp., which together comprised up to 50% of the total microorganisms. In addition, a shift in bacterial community structure was observed during phenol biodegradation. Furthermore, the most effective phenol-degrading strain DW-1 that correspond to the main band in DGGE profile was isolated and identified as Acinetobacter sp., according to phylogenetic analyses of the 16S ribosomal ribonucleic acid (rRNA gene sequences. The strain DW-1 also produced the most important enzyme, phenol hydroxylase, and it also exhibited a good ability to degrade phenol when immobilized on GAC. This study indicates that the enrichment culture has great potential application for treatment of phenol-polluted drinking water sources, and the indigenous phenol-degrading microorganism could recover from drinking water biofilters as an efficient resource for phenol removal. Therefore, the aim of this study is to draw attention to recover native phenol-degrading bacteria from drinking water biofilters, and use these native microorganisms as phenolic water remediation in drinking water sources.

  9. Isolation of PAH-degrading bacteria from mangrove sediments and their biodegradation potential.

    Science.gov (United States)

    Guo, C L; Zhou, H W; Wong, Y S; Tam, N F Y

    2005-01-01

    Surface sediment samples were collected from seven mangrove swamps in Hong Kong SAR with different degrees of contamination. The total concentrations of 16 PAHs in these sediments ranged from 169.41 to 1058.37 ng g(-1) with the highest concentration found in Ma Wan and the lowest in Kei Ling Ha Lo Wai mangrove swamp. In each swamp, three bacterial consortia were enriched from sediments using phenanthrene (Phe) as the sole carbon and energy source, and individual bacterial colony showing Phe degradation was isolated and identified by 16S rDNA gene sequence. The consortia enriched from Sai Keng and Ho Chung sediments had highest ability to degrade mixed PAHs in liquid medium, with 90% Phe and Fla (fluoranthene) degraded in 7 days. On the other hand, Kei Ling Ha Lo Wai-enriched consortia degraded less than 40% Phe and Fla. Pyrene (Pyr) was hardly degraded by the consortia enriched from sediments. Bacterial isolates, namely Rhodococcus (HCCS), Sphingomonas (MWFG) and Paracoccus (SPNT) were capable to degrade mixed PAHs (Phe + Fla + Pyr). Their degradation percentages could be lower, comparable or even higher than their respective enriched consortia, depending on the consortium and the type of PAH compounds. These results suggest that PAH-degrading bacteria enriched from mangrove sediments, either as a mixed culture or as a single isolate could be used for PAHs bioremediation.

  10. Distribution of hydrocarbon-degrading bacteria in the soil environment and their contribution to bioremediation.

    Science.gov (United States)

    Fukuhara, Yuki; Horii, Sachie; Matsuno, Toshihide; Matsumiya, Yoshiki; Mukai, Masaki; Kubo, Motoki

    2013-05-01

    A real-time PCR quantification method for indigenous hydrocarbon-degrading bacteria (HDB) carrying the alkB gene in the soil environment was developed to investigate their distribution in soil. The detection limit of indigenous HDB by the method was 1 × 10(6) cells/g-soil. The indigenous HDB were widely distributed throughout the soil environment and ranged from 3.7 × 10(7) to 5.0 × 10(8) cells/g-soil, and the ratio to total bacteria was 0.1-4.3 %. The dynamics of total bacteria, indigenous HDB, and Rhodococcus erythropolis NDKK6 (carrying alkB R2) during bioremediation were analyzed. During bioremediation with an inorganic nutrient treatment, the numbers of these bacteria were slightly increased. The numbers of HDB (both indigenous bacteria and strain NDKK6) were gradually decreased from the middle stage of bioremediation. Meanwhile, the numbers of these bacteria were highly increased and were maintained during bioremediation with an organic nutrient. The organic treatment led to activation of not only the soil bacteria but also the HDB, so an efficient bioremediation was carried out.

  11. [Lignocellulose degrading bacteria and their genes encoding cellulase/hemicellulase in rumen--a review].

    Science.gov (United States)

    Chen, Furong; Zhu, Yaxin; Dong, Xiuzhu; Liu, Lihua; Huang, Li; Dai, Xin

    2010-08-01

    Rumen of ruminant animals is known as a natural reactor involved in highly efficient lignocelluloses degradation. Rumen fibrolytic microbes have attracted an increasing attention for their potential value in biofuel research. Studies on rumen microbes have traditionally entailed the isolation of fibrolytic bacteria and subsequent analysis of fibrolytic enzymes. Developments in genomic and metagenomic approaches have made it possible to isolate directly genes and gene clusters encoding fibrolytic activities from rumen samples, permitting a global analysis of mechanisms of degradation of lignocellulose in rumen. Research in this field shows that lignocellulose degradation in rumen is a complex process involving a number of different microbes and is effected by a huge array of hydrolytic enzymes in a concerted fashion. This review briefly summarizes results from recent studies, especially metagenomic studies, on lignocellulose degradation in rumen.

  12. Hydrocarbon-Degrading Bacteria Exhibit a Species-Specific Response to Dispersed Oil while Moderating Ecotoxicity

    Science.gov (United States)

    Overholt, Will A.; Marks, Kala P.; Romero, Isabel C.; Hollander, David J.; Snell, Terry W.

    2015-01-01

    The Deepwater Horizon blowout in April 2010 represented the largest accidental marine oil spill and the largest release of chemical dispersants into the environment to date. While dispersant application may provide numerous benefits to oil spill response efforts, the impacts of dispersants and potential synergistic effects with crude oil on individual hydrocarbon-degrading bacteria are poorly understood. In this study, two environmentally relevant species of hydrocarbon-degrading bacteria were utilized to quantify the response to Macondo crude oil and Corexit 9500A-dispersed oil in terms of bacterial growth and oil degradation potential. In addition, specific hydrocarbon compounds were quantified in the dissolved phase of the medium and linked to ecotoxicity using a U.S. Environmental Protection Agency (EPA)-approved rotifer assay. Bacterial treatment significantly and drastically reduced the toxicity associated with dispersed oil (increasing the 50% lethal concentration [LC50] by 215%). The growth and crude oil degradation potential of Acinetobacter were inhibited by Corexit by 34% and 40%, respectively; conversely, Corexit significantly enhanced the growth of Alcanivorax by 10% relative to that in undispersed oil. Furthermore, both bacterial strains were shown to grow with Corexit as the sole carbon and energy source. Hydrocarbon-degrading bacterial species demonstrate a unique response to dispersed oil compared to their response to crude oil, with potentially opposing effects on toxicity. While some species have the potential to enhance the toxicity of crude oil by producing biosurfactants, the same bacteria may reduce the toxicity associated with dispersed oil through degradation or sequestration. PMID:26546426

  13. Genetic and phenotypic diversity of carbofuran-degrading bacteria isolated from agricultural soils.

    Science.gov (United States)

    Shin, Dong-Hyeon; Kim, Dong-Uk; Seong, Chi-Nam; Song, Hong-Gyu; Ka, Jong-Ok

    2012-04-01

    Thirty-seven carbofuran-degrading bacteria were isolated from agricultural soils, and their genetic and phenotypic characteristics were investigated. The isolates were able to utilize carbofuran as a sole source of carbon and energy. Analysis of the 16S rRNA gene sequence indicated that the isolates were related to members of the genera Rhodococcus, Sphingomonas, and Sphingobium, including new types of carbofuran-degrading bacteria, Bosea and Microbacterium. Among the 37 isolates, 15 different chromosomal DNA patterns were obtained by polymerase chain reaction (PCR) amplification of repetitive extragenic palindromic (REP) sequences. Five of the 15 representative isolates were able to degrade carbofuran phenol, fenoxycarb, and carbaryl, in addition to carbofuran. Ten of the 15 representative isolates had 1 to 8 plasmids. Among the 10 plasmid-containing isolates, plasmid-cured strains were obtained from 5 strains. The cured strains could not degrade carbofuran and other pesticides anymore, suggesting that the carbofuran degradative genes were on the plasmid DNAs in these strains. When analyzed with PCR amplification and dot-blot hybridization using the primers targeting for the previously reported carbofuran hydrolase gene (mcd), all of the isolates did not show any positive signals, suggesting that their carbofuran hydrolase genes had no significant sequence homology with the mcd gene.

  14. Polycyclic aromatic hydrocarbon-degrading bacteria from aviation fuel spill site at Ibeno, Nigeria.

    Science.gov (United States)

    John, R C; Essien, J P; Akpan, S B; Okpokwasili, G C

    2012-06-01

    Polycyclic aromatic hydrocarbon (PAH)-degrading bacteria were isolated from aviation fuel contaminated soil at Inua Eyet Ikot in Ibeno, Nigeria. PAH-degrading bacteria in the contaminated soil were isolated by enrichment culture technique. Isolates with high PAH degrading potential characterized by their extensive growth on PAH-supplemented minimal salt medium were screened for their naphthalene, phenanthrene and chrysene degradability. The screening medium which contained selected PAHs as the sole source of carbon and energy showed that Micrococcus varians AFS-2, Pseudomonas putida AFS-3 and Alcaligenes faecalis AFS-5 exhibited a concentration-dependent growth in all the PAH-compounds tested. There were visible changes in the color of growth medium suggesting the production of different metabolites. Their acclimation to different PAH substrates was also evident as A. faecalis AFS-5 isolated from chrysene grew well on other less complex aromatic compounds. The isolate exhibited best growth (0.44 OD(600)) when exposed to 10 ppm of chrysene for 5 days and could utilize up to 90 ppm of chrysene. This isolate and others with strong PAH-degrading potentials are recommended for bioremediation of PAHs in aviation fuel-contaminated sites in the tropics.

  15. Identification and characterisation of oil sludge degrading bacteria isolated from compost

    Directory of Open Access Journals (Sweden)

    Ubani Onyedikachi

    2016-06-01

    Full Text Available Compounds present in oil sludge such as polycyclic aromatic hydrocarbons (PAHs are known to be cytotoxic, mutagenic and potentially carcinogenic. Microorganisms including bacteria and fungi have been reported to degrade oil sludge components to innocuous compounds such as carbon dioxide, water and salts. In the present study, we isolated different bacteria with PAH-degrading capabilities from compost prepared from oil sludge and animal manures. These bacteria were isolated on a mineral base medium and mineral salt agar plates. A total of 31 morphologically distinct isolates were carefully selected from 5 different compost treatments for identification using polymerase chain reaction (PCR of the 16S rRNA gene with specific primers (universal forward 16S-P1 PCR and reverse 16S-P2 PCR. The amplicons were sequenced and sequences were compared with the known nucleotides from the GenBank. The phylogenetic analyses of the isolates showed that they belong to 3 different clades; Firmicutes, Proteobacteria and Actinobacteria. These bacteria identified were closely related to the genera Bacillus, Arthrobacter, Staphylococcus, Brevibacterium, Variovorax, Paenibacillus, Ralstonia and Geobacillus. The results showed that Bacillus species were predominant in all composts. Based on the results of the degradation of the PAHs in the composts and results of previous studies on bacterial degradation of hydrocarbons in oil, the characteristics of these bacterial isolates suggests that they may be responsible for the breakdown of PAHs of different molecular weights in the composts. Thus, they may be potentially useful for bioremediation of oil sludge during compost bioremediation.

  16. Oxalate-Degrading Capacities of Gastrointestinal Lactic Acid Bacteria and Urinary Tract Stone Formation

    OpenAIRE

    Mohammad Kargar; Rouhi Afkari; Sadegh Ghorbani-Dalini

    2013-01-01

    Background: Calcium oxalate is one the most significant causes of human kidney stones. Increasing oxalate uptake results in increased urinary oxalate. Elevated urinary oxalate is one the most important causes of kidney stone formation. This study aims to evaluate oxalate-degrading capacity of lactic acid bacteria and its impact on incidence of kidney stone.Materials and Methods: This case-control study was conducted on serum, urinary, and fecal samples. The research population included a tota...

  17. [Degradation of L-phenylalanine and of aromatic carboxylic acids by chloridazon-degrading bacteria. Combination of side chain degradation and dioxygenase pathway].

    Science.gov (United States)

    Wegst, W; Lingens, F

    1981-09-01

    Strain N of Chloridazon-degrading bacteria degrades phenylalanine via cis-2,3-dihydro-2,3-dihydroxyphenylalanine,2,3-dihydroxyphenylalanine aspartate and 4-hydroxy-2-oxovalerate [Hoppe-Seyler's Z. Physiol. Chem. 360, 957--969, (1979); Biochem. J. 194, 679--684 (1981)]. cis-2,3-Dihydro-2,3-dihydroxyphenylalanine and 2,3-dihydroxyphenylalanine as well as phenylpyruvate, cis-2,3-dihydro-2,3-dihydroxyphenylpyruvate, 2,3-dihydroxyphenylpyruvate, cis-2,3-dihydro-2,3-dihydroxyphenylacetate, 2,3-dihydroxyphenylacetate and 2,3-dihydroxybenzaldehyde are detectable in the medium of strain E during growth on phenylalanine. Incubation with phenylacetate, 3-phenylpropionate or 4-phenylbutyrate leads to the accumulation of the corresponding cis-2,3-dihydro-2,3-dihydroxyphenyl derivatives. These compounds are transformed with dihydrodiol dehydrogenase to 2,3-dihydroxyphenylacetate, 3-(2,3-dihydroxyphenyl)propionate and 4-(2,3-dihydroxyphenyl)-butyrate, 3-(2,3-dihydroxyphenyl)propionate is attacked by a catechol 2,3-dioxygenase and the meta-cleavage product is again cleaved by a hydrolase yielding succinate. In a similar reaction sequence the degradation of 4-phenylbutyrate leads to the formation of glutarate. From the growth medium of strain E on phenylacetate also small amounts of 2-, 3- and 4-hydroxyphenylacetate were isolated. Resting cells were shown to metabolize 3- and 4-hydroxyphenylacetate via homogentisate and 3,4-dihydroxyphenylacetate. In the culture medium of strain K2AP benzoate could be detected. Pathways for the degradation of phenylalanine and aromatic carboxylic acids in chloridazon degrading bacteria are proposed.

  18. Isolation and characterization of heavy polycyclic aromatic hydrocarbon-degrading bacteria adapted to electrokinetic conditions.

    Science.gov (United States)

    Li, Fengmei; Guo, Shuhai; Hartog, Niels; Yuan, Ye; Yang, Xuelian

    2016-02-01

    Polycyclic aromatic hydrocarbon (PAH)-degrading bacteria capable of growing under electrokinetic conditions were isolated using an adjusted acclimation and enrichment procedure based on soil contaminated with heavy PAHs in the presence of an electric field. Their ability to degrade heavy PAHs under an electric field was individually investigated in artificially contaminated soils. The results showed that strains PB4 (Pseudomonas fluorescens) and FB6 (Kocuria sp.) were the most efficient heavy PAH degraders under electrokinetic conditions. They were re-inoculated into a polluted soil from an industrial site with a PAH concentration of 184.95 mg kg(-1). Compared to the experiments without an electric field, the degradation capability of Pseudomonas fluorescens and Kocuria sp. was enhanced in the industrially polluted soil under electrokinetic conditions. The degradation extents of total PAHs were increased by 15.4 and 14.0% in the electrokinetic PB4 and FB6 experiments (PB4 + EK and FB6 + EK) relative to the PB4 and FB6 experiments without electrokinetic conditions (PB4 and FB6), respectively. These results indicated that P. fluorescens and Kocuria sp. could efficiently degrade heavy PAHs under electrokinetic conditions and have the potential to be used for the electro-bioremediation of PAH-contaminated soil, especially if the soil is contaminated with heavy PAHs.

  19. Ammonium-oxidizing bacteria facilitate aerobic degradation of sulfanilic acid in activated sludge.

    Science.gov (United States)

    Chen, Gang; Ginige, Maneesha P; Kaksonen, Anna H; Cheng, Ka Yu

    2014-01-01

    Sulfanilic acid (SA) is a toxic sulfonated aromatic amine commonly found in anaerobically treated azo dye contaminated effluents. Aerobic acclimatization of SA-degrading mixed microbial culture could lead to co-enrichment of ammonium-oxidizing bacteria (AOB) because of the concomitant release of ammonium from SA oxidation. To what extent the co-enriched AOB would affect SA oxidation at various ammonium concentrations was unclear. Here, a series of batch kinetic experiments were conducted to evaluate the effect of AOB on aerobic SA degradation in an acclimatized activated sludge culture capable of oxidizing SA and ammonium simultaneously. To account for the effect of AOB on SA degradation, allylthiourea was used to inhibit AOB activity in the culture. The results indicated that specific SA degradation rate of the mixed culture was negatively correlated with the initial ammonium concentration (0-93 mM, R²= 0.99). The presence of AOB accelerated SA degradation by reducing the inhibitory effect of ammonium (≥ 10 mM). The Haldane substrate inhibition model was used to correlate substrate concentration (SA and ammonium) and oxygen uptake rate. This study revealed, for the first time, that AOB could facilitate SA degradation at high concentration of ammonium (≥ 10 mM) in an enriched activated sludge culture.

  20. Exploration of hydrocarbon degrading bacteria on soils contaminated by crude oil from South Sumatera

    Directory of Open Access Journals (Sweden)

    A. Napoleon

    2014-07-01

    Full Text Available The goal of this research was to explore hydrocarbon degrading bacteria on crude oil contaminated soil with potential to degrade hydrocarbon in oil pollutant. The research started by early August 2013 till January 2014. Soil sampling for this research was taken on several places with contaminated soil location such as Benakat, Rimau, and Pengabuan all of it located in South Sumatera. Conclusion from this research Isolates obtained from three (3 sites of contaminated soil and treated using SBS medium were Bacillus cereus, Pseudomonas aeruginosa, Klebsiella pnumoniae, Streptococcus beta hemolisa, Proteus mirabilis, Staphylococcus epidermis and Acinotobacter calcoaceticus. Isolates that survived on 300 ppm of hydrocarbon concentration were Bacillus cereus, Pseudomonas aeruginosa and Acinetobacter cakciaceticus Selected isolates posses the ability to degrade hydrocarbon by breaking hydrocarbon substance as the energy source to support isolates existence up to 1,67 TPH level. Based on results accomplish by this research, we urge for further research involving the capacity of isolates to degrade wide variety of hydrocarbon substance and more to develop the potential of these bacteria for bioremediation.

  1. Bacteria-based polythene degradation products: GC-MS analysis and toxicity testing.

    Science.gov (United States)

    Shahnawaz, Mohd; Sangale, Manisha K; Ade, Avinash B

    2016-06-01

    Polythene degradation leads to the production of various by-products depending upon the type of degradation process. The polythene degradation products (PEDP) in the culture supernatant of the two bacteria (Lysinibacillus fusiformis strain VASB14/WL and Bacillus cereus strain VASB1/TS) were analyzed with GC-MS technique. The major by-products in the PEDP in the culture supernatant of L. fusiformis strain VASB14/WL (1,2,3,4 tetra methyl benzene) and B. cereus strain VASB1/TS (1,2,3 trimethyl benzene, 1 ethyl 3,5-dimethyl benzene, 1,4 di methyl 2 ethyl benzene, and dibutyl phthalate) dissolved in diethyl ether were recorded. To assess the environmental applicability of polythene degradation using L. fusiformis strain VASB14/WL and B. cereus strain VASB1/TS at in vitro level. The effect of PEDP produced after 2 months of regular shaking at room temperature on both plants and animal system was studied. No significant decrease in the percent seed germination was recorded with the PEDP of both the bacteria. PEDP produced by L. fusiformis strain VASB14/WL did not report any significant change in germination index (GI) at 10 and 25 %, but least GI (39.66 ± 13.94) was documented at 50 % concentration of PEDP. Highest elongation inhibition rate (53.83 ± 15.71) of Sorghum was also recorded with L. fusiformis and at the same concentration.

  2. Isolation and genetic identification of PAH degrading bacteria from a microbial consortium.

    Science.gov (United States)

    Molina, M Carmen; González, Natalia; Bautista, L Fernando; Sanz, Raquel; Simarro, Raquel; Sánchez, Irene; Sanz, José L

    2009-11-01

    Polycyclic aromatic hydrocarbons (PAH; naphthalene, anthracene and phenanthrene) degrading microbial consortium C2PL05 was obtained from a sandy soil chronically exposed to petroleum products, collected from a petrochemical complex in Puertollano (Ciudad Real, Spain). The consortium C2PL05 was highly efficient degrading completely naphthalene, phenanthrene and anthracene in around 18 days of cultivation. The toxicity (Microtox method) generated by the PAH and by the intermediate metabolites was reduced to levels close to non-toxic in almost 40 days of cultivation. The identified bacteria from the contaminated soil belonged to gamma-proteobacteria and could be include in Enterobacter and Pseudomonas genus. DGGE analysis revealed uncultured Stenotrophomonas ribotypes as a possible PAH degrader in the microbial consortium. The present work shows the potential use of these microorganisms and the total consortium for the bioremediation of PAH polluted areas since the biodegradation of these chemicals takes place along with a significant decrease in toxicity.

  3. Isolation and identification of quercetin degrading bacteria from human fecal microbes.

    Directory of Open Access Journals (Sweden)

    Zhichao Zhang

    Full Text Available Quercetin has a wide range of biological properties. The gut microflora can often modulate its biological activity and their potential health effects. There still is a lack of information about gut bacteria involving in this process. The strains of gut microbes from human feces that can transform quercetin were isolated and identified by in vitro fermentation. The results showed that Escherichia coli, Stretococcus lutetiensis, Lactobacillus acidophilus, Weissella confusa, Enterococcus gilvus, Clostridium perfringens and Bacteroides fragilis have the various ability of degrading quercetin. Among them, C. perfringens and B. fragilis were discovered to have the strongest ability of degrading quercetin. Additionally, quercetin can't inhibit the growth of C. perfringens. In conclusion, many species of gut microbiota can degrade quercetin, but their ability are different.

  4. Isolation and characterization of bacteria degrading polychlorinated biphenyls from transformer oil.

    Science.gov (United States)

    Rojas-Avelizapa, N G; Rodríguez-Vázquez, R; Martínez-Cruz, J; Esparza-García, F; Montes de Oca-García, A; Ríos-Leal, E; Fernández-Villagómez, G

    1999-01-01

    Polychlorinated biphenyls from transformer oil were degraded in liquid culture under aerobic conditions using a mixed bacterial culture isolated from a transformer oil sample with a high content of polychlorinated biphenyls and other hydrocarbons. Four strains were identified, three of them corresponded to genus Bacillus, the other one to Erwinia. Bacteria in the transformer oil could remove as much as 65% of polychlorinated biphenyls (88% W/V in the transformer oil). Additional data showed that the two isolated strains of B. lentus were able to grow on transformer oil and degrade polychlorinated biphenyls by 80 and 83%. Our results provide evidence that microorganisms occurring in transformer oil have the potential to degrade polychlorinated biphenyls.

  5. TAML activator/peroxide-catalyzed facile oxidative degradation of the persistent explosives trinitrotoluene and trinitrobenzene in micellar solutions.

    Science.gov (United States)

    Kundu, Soumen; Chanda, Arani; Khetan, Sushil K; Ryabov, Alexander D; Collins, Terrence J

    2013-05-21

    TAML activators are well-known for their ability to activate hydrogen peroxide to oxidize persistent pollutants in water. The trinitroaromatic explosives, 2,4,6-trinitrotoluene (TNT) and 1,3,5-trinitrobenzene (TNB), are often encountered together as persistent, toxic pollutants. Here we show that an aggressive TAML activator with peroxides boosts the effectiveness of the known surfactant/base promoted breakdown of TNT and transforms the surfactant induced nondestructive binding of base to TNB into an extensive multistep degradation process. Treatment of basic cationic surfactant solutions of either TNT or TNB with TAML/peroxide (hydrogen peroxide and tert-butylhydroperoxide, TBHP) gave complete pollutant removal for both in 75% of the nitrogen and ≥20% of the carbon converted to nitrite/nitrate and formate, respectively. For TNT, the TAML advantage is to advance the process toward mineralization. Basic surfactant solutions of TNB gave the colored solutions typical of known Meisenheimer complexes which did not progress to degradation products over many hours. However with added TAML activator, the color was bleached quickly and the TNB starting compound was degraded extensively toward minerals within an hour. A slower surfactant-free TAML activator/peroxide process also degrades TNT/TNB effectively. Thus, TAML/peroxide amplification effectively advances TNT and TNB water treatment giving reason to explore the environmental applicability of the approach.

  6. Isolation, Identification and Phenotypic Characterization of Microcystin-Degrading Bacteria from Lake Erie

    Science.gov (United States)

    Krishnan, A.; Mou, X. J.

    2015-12-01

    Lake Erie, the smallest and warmest lake among the Laurentian Great Lakes, is known for its problem of eutrophication and frequent occurrence of harmful cyanobacterial blooms (CyanoHABs). One major harmful effect of CyanoHABs is the production of cyanotoxins, especially microcystins. Microcystins (MC) are a group of hepatotoxins and the predominant variant of them is MC-LR. Field measurements and lab experiments indicate that MC degradation in Lake Erie is mainly carried out by indigenous bacteria. However, our knowledge on taxa involved in this process is very limited. This study aimed to fill this knowledge gap using a culture-dependent approach. Water and surface sediment samples were collected from Lake Erie in 2014 and 2015 and enriched with MC-LR. Cells were plated on a number of culturing media. The obtained pure bacterial cultures were screened for MC degrading abilities by MT2 BIO-LOG assays and by growing cells in liquid media containing MC-LR as the sole carbon source. In the latter experiment, MC concentrations were measured using HPLC. Isolates showing positive MC degradation activities in the screening steps were designated MC+ bacteria and characterized based on their phenotypic properties, including colony pigmentation, elevation, opacity, margin, gram nature and motility. The taxonomic identity of MC+ bacteria was determined by 16S rRNA gene full-length DNA sequencing. The presence of mlrA, a gene encoding MC cleavage pathway, was detected by PCR. Our culturing efforts obtained 520 pure cultures; 44 of them were identified as MC+. These MC+ isolates showed diversity in taxonomic identities and differed in their morphology, gram nature, colony characteristics and motility. PCR amplification of mlrA gene yield negative results for all MC+ isolates, indicating that the primers that were used may not be ubiquitous enough to cover the heterogeneity of mlrA genes or, more likely, alternative degradative genes/pathways were employed by Lake Erie bacteria

  7. Isolation and identification of crude oil degrading bacteria from gastropod Haustrum scobina collected from Persian Gulf (Bandar Abbas Shoreline provenance

    Directory of Open Access Journals (Sweden)

    Zinab Bayat

    2016-06-01

    Full Text Available Introduction: Biodegradation is a good alternative rather than chemical and physical methods for cleaning oil contaminated areas. Several factors like crude oil concentration, biosurfactant production, salinity and incubation time affect the biodegradation. Materials and methods: In this study, seawater sample and gastropod were collected from Persian Gulf. To isolate oil degrading bacteria from collected samples, ONR7a medium was used. The strains that had more growth and higher oil removal were selected and identified. The factors such as the effect of different concentrations of oil, incubation time, mixed cultures and salinity on the biodegradation were investigated. Results: Six crude oil degrading bacteria were isolated. Between these bacteria 2 strains were selected based on higher oil removal. These strains belonged to the genus Vibrio and Halomonas. Strains with higher Emulsification activity produce more biosurfactant and have higher oil biodegradation. Growth and oil degradation have increment pattern by prolonging the incubation time. Mixed culture of Vibrio and Halomonas strains have higher rates of degradation rather than culturing with one of them. Increase in crudeoil concentration to 2.5% caused reduction in growth of bacteria and degradation of oil. Discussion and conclusion: The results of this study show that crude oil degrading bacteria have high diversity in Persian Gulf. These bacteria have higher capability for oil degradation thus they can be used for remediation of oil contaminated areas.

  8. Isolation and identification of oil sludge degrading bacteria from production tank Number 9 Masjed Soleiman

    Directory of Open Access Journals (Sweden)

    Yalda Sheyni

    2014-07-01

    Full Text Available   Introduction: “Bioremediation” is one of the most effective methods to remove petroleum contaminants. The aim of the present study is to isolate the indigenous bacteria from the waste petroleum in the Masjed Soleiman No. 9 production tank and to examine the effect of their application on the elimination of petroleum heavy chain hydrocarbons and converting them into light compounds .   Materials and methods: Two percent of petroleum sludge was inoculated to the mineral basal medium and after proliferation of its indigenous bacteria, they were inoculated into the mixture of oil sludge and sand at level of 5%, and the amount of total hydrocarbons and residual oil were measured and compared. The isolates were identified based on biochemical tests and 16S rRNA gene sequencing. Optimization of nitrogen and phosphate sources was done based on growth curves of selected isolates. Gas chromatography was used to determine degradation of sludge hydrocarbons.   Results: In this study, 10 bacterial isolates were isolated from petroleum sludge . Measurement of petroleum total hydrocarbons, using Soxhlet-extraction method, showed that two isolates named MIS1 and MIS2 are able to decompose oil sludge hydrocarbons within 7 days, with the yields of 62% and 72%, respectively. Furthermore, the two isolates reach the end of the logarithmic phase at 48 and 120 hrs, respectively. The best source of nitrogen and phosphate for both isolates was ammonium nitrate and potassium di ­hydrogen phosphate, respectively. The isolates were identified as Arthrobacter aurescens and Pseudomonas aeruginosa , respectively. In gas chromatography analysis it was revealed that Pseudomonas aeruginosa was more potent in degradation of heavy chain hydrocarbons and their conversion to light chain compounds.   Discussion and conclusion: Resident bacteria are present in the oil sludge and are able to degrade the heavy petroleum compounds and convert them into light compounds. These

  9. Screening, selection and characterization of phytic acid degrading lactic acid bacteria from chicken intestine.

    Science.gov (United States)

    Raghavendra, Ponnala; Halami, Prakash M

    2009-07-31

    This study was undertaken to screen and select potent phytate degrading lactic acid bacteria and to evaluate their additional characteristic features. Forty lactic acid bacterial strains were isolated from different sources and screened for their ability to degrade myo-inositol hexaphosphate or IP(6) by cobalt chloride staining (plate assay) method, using calcium or sodium salt of phytic acid as substrate. All the forty isolates were able to degrade calcium phytate. However, only two Pediococcus pentosaceus strains (CFR R38 and CFR R35) were found to degrade sodium phytate. These strains showed phytase activity of 213 and 89 U at 50 degrees C, respectively and poor acid phosphatase activity. These strains were further evaluated for additional characteristic features. At pH 2, P. pentosaceus strains CFR R38 and CFR R35 showed 50.7 and 48.5 percentage survivability after 2 h of incubation respectively and they could also withstand 0.3% ox-bile. These cultures exhibited 54.6 and 44.8% of hydrophobicity to xylene, antibacterial activity against food borne pathogens and possessed beta-galactosidase activity. The resistance pattern to several antibiotics was also analyzed. The present study indicates that these strains, having phytate degrading ability and other characteristic features can be exploited as starter cultures in fermented foods to improve the mineral bioavailability.

  10. Anaerobic degradation of cyclohexane by sulfate-reducing bacteria from hydrocarbon-contaminated marine sediments

    Directory of Open Access Journals (Sweden)

    Ulrike eJaekel

    2015-02-01

    Full Text Available The fate of cyclohexane, often used as a model compound for the biodegradation of cyclic alkanes due to its abundance in crude oils, in anoxic marine sediments has been poorly investigated. In the present study, we obtained an enrichment culture of cyclohexane-degrading sulfate-reducing bacteria from hydrocarbon-contaminated intertidal marine sediments. Microscopic analyses showed an apparent dominance by oval cells of 1.5×0.8 m. Analysis of a 16S rRNA gene library, followed by whole-cell hybridization with group- and sequence-specific oligonucleotide probes showed that these cells belonged to a single phylotype, and were accounting for more than 80% of the total cell number. The dominant phylotype, affiliated with the Desulfosarcina-Desulfococcus cluster of the Deltaproteobacteria, is proposed to be responsible for the degradation of cyclohexane. Quantitative growth experiments showed that cyclohexane degradation was coupled with the stoichiometric reduction of sulfate to sulfide. Substrate response tests corroborated with hybridization with a sequence-specific oligonucleotide probe suggested that the dominant phylotype apparently was able to degrade other cyclic and n-alkanes, including the gaseous alkanes propane and n-butane. Based on GC-MS analyses of culture extracts cyclohexylsuccinate was identified as a metabolite, indicating an activation of cyclohexane by addition to fumarate. Other metabolites detected were 3-cyclohexylpropionate and cyclohexanecarboxylate providing evidence that the overall degradation pathway of cyclohexane under anoxic conditions is analogous to that of n-alkanes.

  11. The diversity of PAH-degrading bacteria in a deep-sea water column above the Southwest Indian Ridge.

    Science.gov (United States)

    Yuan, Jun; Lai, Qiliang; Sun, Fengqin; Zheng, Tianling; Shao, Zongze

    2015-01-01

    The bacteria involved in organic pollutant degradation in pelagic deep-sea environments are largely unknown. In this report, the diversity of polycyclic aromatic hydrocarbon (PAH)-degrading bacteria was analyzed in deep-sea water on the Southwest Indian Ridge (SWIR). After enrichment with a PAH mixture (phenanthrene, anthracene, fluoranthene, and pyrene), nine bacterial consortia were obtained from depths of 3946-4746 m. While the consortia degraded all four PAHs when supplied in a mixture, when PAHs were tested individually, only phenanthrene supported growth. Thus, degradation of the PAH mixture reflected a cometabolism of anthracene, fluoranthene, and pyrene with phenanthrene. Further, both culture-dependent and independent methods revealed many new bacteria involved in PAH degradation. Specifically, the alpha and gamma subclasses of Proteobacteria were confirmed as the major groups within the communities. Additionally, Actinobacteria, the CFB group and Firmicutes were detected. Denaturing Gradient Gel Electrophoresis (DGGE) analysis showed that bacteria closely affiliated with Alcanivorax, Novosphingobium, and Rhodovulum occurred most frequently in different PAH-degrading consortia. By using general heterotrophic media, 51 bacteria were isolated from the consortia and of these 34 grew with the PAH mixture as a sole carbon source. Of these, isolates most closely related to Alterierythrobacter, Citricella, Erythrobacter, Idiomarina, Lutibacterium, Maricaulis, Marinobacter, Martelella, Pseudidiomarina, Rhodobacter, Roseovarius, Salipiger, Sphingopyxis, and Stappia were found to be PAH degraders. To the best of our knowledge, this is the first time these bacteria have been identified in this context. In summary, this report revealed significant diversity among the PAH-degrading bacteria in the deep-sea water column. These bacteria may play a role in PAH removal in deep-sea environments.

  12. Enhanced degradation activity by endophytic bacteria of plants growing in hydrocarbon contaminated soil

    Energy Technology Data Exchange (ETDEWEB)

    Phillips, L.; Germida, J.J. [Saskatchewan Univ., Saskatoon, SK (Canada); Greer, C.W. [National Research Council of Canada, Montreal, PQ (Canada). Biotechnology Research Inst.

    2006-07-01

    The feasibility of using phytoremediation for cleaning soils contaminated with petroleum hydrocarbons was discussed. Petroleum hydrocarbons are problematic because of their toxicity, mobility and persistence in the environment. Appropriate clean-up methods are needed, given that 60 per cent of Canada's contaminated sites contain these compounds. Phytoremediation is an in situ biotechnology in which plants are used to facilitate contaminant removal. The approach relies on a synergistic relationship between plants and their root-associated microbial communities. Previous studies on phytoremediation have focussed on rhizosphere communities. However, it is believed that endophytic microbes may also play a vital role in organic contaminant degradation. This study investigated the structural and functional dynamics of both rhizosphere and endophytic microbial communities of plants from a phytoremediation field site in south-eastern Saskatchewan. The former flare pit contains up to 10,000 ppm of F3 to F4 hydrocarbon fractions. Root samples were collected from tall wheatgrass, wild rye, saltmeadow grass, perennial ryegrass, and alfalfa. Culture-based and culture-independent methods were used to evaluate the microbial communities associated with these roots. Most probable number assays showed that the rhizosphere communities contained more n-hexadecane, diesel fuel, and PAH degraders. However, mineralization assays with 14C labelled n-hexadecane, naphthalene, and phenanthrene showed that endophytic communities had more degradation activities per standardized initial degrader populations. Total community DNA samples taken from bulk, rhizosphere, and endophytic samples, were analyzed by denaturing gradient gel electrophoresis. It was shown that specific bacteria increased in endophytic communities compared to rhizosphere communities. It was suggested plants may possibly recruit specific bacteria in response to hydrocarbon contamination, thereby increasing degradation

  13. Phytate degrading activities of lactic acid bacteria isolated from traditional fermented food

    Science.gov (United States)

    Damayanti, Ema; Ratisiwi, Febiyani Ndaru; Istiqomah, Lusty; Sembiring, Langkah; Febrisiantosa, Andi

    2017-03-01

    The objective of this study was to determine the potential of LAB with phytate degrading activity from fermented traditional food grain-based and legume-based. Lactic acid bacteria were isolated from different sources of traditional fermented food from Gunungkidul Yogyakarta Indonesia such as gembus tempeh (tofu waste), soybean tempeh, lamtoro tempeh (Leucaena bean) and kara tempeh. Isolation of LAB was performed using Total Plate Count (TPC) on de Man Rogosa Sharpe Agar (MRSA) medium supplemented with CaCO3. They were screened for their ability to degrade myo-inositol hexaphosphate or IP6 by using qualitative streak platemethod with modified de Man Rogosa-MorpholinoPropanesulfonic Acid Sharpe (MRS-MOPS) medium contained sodium salt of phytic acid as substrate and cobalt chloride staining (plate assay) method. The selected isolates were further assayed for phytase activities using quantitative method with spectrophotometer and the two selected isolates growth were optimized. Furthermore, thhe isolates that shown the highest phytase activity was characterized and identified using API 50 CH kitand 16S rRNA gene sequencing. The results showed that there were 18 LAB isolates obtained from samplesand 13 isolates were able to degrade sodium phytate based on qualitative screening. According to quantitative assay, the highest phytate degrading activities were found in TG-2(23.562 U/mL) and TG-1 (19.641 U/mL) isolated from gembus tempeh. The phytate activity of TG-2 was optimum at 37 °C with agitation, while the phytate activity of TG-1 was optimum at 45 °C without agitation. Characterization and identification of TG-2 isolate with the highest phytate degrading activity using API 50 CH and 16S rRNA showed that TG-2had homology with Lactobacillus fermentum. It could be concluded that LAB from from fermented traditional food grain-based and legume-based produced the extracellular phytase. Keywords: lactic acid bacteria, tempeh, phytatedegrading activity

  14. Bacteria encapsulated in layered double hydroxides: towards an efficient bionanohybrid for pollutant degradation.

    Science.gov (United States)

    Halma, Matilte; Mousty, Christine; Forano, Claude; Sancelme, Martine; Besse-Hoggan, Pascale; Prevot, Vanessa

    2015-02-01

    A soft chemical process was successfully used to immobilize Pseudomonas sp. strain ADP (ADP), a well-known atrazine (herbicide) degrading bacterium, within a Mg2Al-layered double hydroxide host matrix. This approach is based on a simple, quick and ecofriendly direct coprecipitation of metal salts in the presence of a colloidal suspension of bacteria in water. It must be stressed that by this process the mass ratio between inorganic and biological components was easily tuned ranging from 2 to 40. This ratio strongly influenced the biological activity of the bacteria towards atrazine degradation. The better results were obtained for ratios of 10 or lower, leading to an enhanced atrazine degradation rate and percentage compared to free cells. Moreover the biohybrid material maintained this biodegradative activity after four cycles of reutilization and 3 weeks storage at 4°C. The ADP@MgAl-LDH bionanohybrid materials were completely characterized by X-ray diffraction (XRD), FTIR spectroscopy, thermogravimetric analysis and scanning and transmission electronic microscopy (SEM and TEM) evidencing the successful immobilization of ADP within the inorganic matrix. This synthetic approach could be readily extended to other microbial whole-cell immobilization of interest for new developments in biotechnological systems.

  15. Degradation of terpenes and terpenoids from Mediterranean rangelands by mixed rumen bacteria in vitro.

    Science.gov (United States)

    Malecky, M; Albarello, H; Broudiscou, L P

    2012-04-01

    This in vitro study aimed at estimating the disappearance rates of 14 terpenes and terpenoids after 24-h incubation with mixed bacteria from caprine rumens. These compounds comprised nine monoterpene hydrocarbons (δ-3-carene, p-cymene, β-myrcene, (E)- and (Z)-β-ocimene, α-phellandrene, α-terpinene, γ-terpinene and α-terpinolene), four oxygenated monoterpenes ((E)- and (Z)-linalool oxide, 4-terpinenol, α + γ terpineol) and one sesquiterpene hydrocarbon (β-cedrene). They were individually exposed to goat rumen microflora for 24 h in 70 ml culture tubes at an input level of 0.5 ml/l. Terpenoids were the least degraded, 100% of (E)-linalool oxide, 95% of (Z)-linalool oxide, 91% of 4-terpinenol and 75% of terpineol remained intact after 24-h incubation. In contrast, α-terpinolene concentration in fermentation broth extracts was below quantification limit, thus indicating an extensive, if not complete, degradation by rumen bacteria. Only 2% of the initial amounts of α-phellandrene were recovered. The other monoterpenes and β-cedrene were partly degraded, with losses ranging from 67% for δ-3-carene to 90% for (E)-β-ocimene. The corresponding rates of disappearance were between 2.67 and 4.08 μmol/ml inoculum per day.

  16. Interfacial interaction between methyl parathion-degrading bacteria and minerals is important in biodegradation.

    Science.gov (United States)

    Zhao, Gang; Huang, Qiaoyun; Rong, Xingmin; Cai, Peng; Liang, Wei; Dai, Ke

    2014-02-01

    In the present study, the influence of kaolinite and goethite on microbial degradation of methyl parathion was investigated. We observed that the biodegradation process was improved by kaolinite and depressed by goethite. Calorimetric data further showed that the metabolic activities of degrading cells (Pseudomonas putida) were enhanced by the presence of kaolinite and depressed by the presence of goethite. A semipermeable membrane experiment was performed and results supported the above observations: the promotive effect of kaolinite and the inhibition of goethite for microbial degradation was not found when the bacteria was enclosed by semipermeable membrane and had no direct contact with these minerals, suggesting the important function of the contact of cellular surfaces with mineral particles. The relative larger particles of kaolinite were loosely attached to the bacteria. This attachment made the cells easy to use the sorbed substrate and then stimulated biodegradation. For goethite, small particles were tightly bound to bacterial cells and limited the acquisition of substrate and nutrients, thereby inhibiting biodegradation. These results indicated that interfacial interaction between bacterial cells and minerals significantly affected the biodegradation of pesticides.

  17. Effects of surfactants on bacteria and the bacterial degradation of alkanes in crude oil

    Energy Technology Data Exchange (ETDEWEB)

    Bruheim, Per

    1998-12-31

    This thesis investigates the effects of surfactants on the bacterial degradation of alkanes in crude oil. Several alkane oxidising Gram positive and Gram negative were tested for their abilities to oxidise alkanes in crude oil emulsified with surfactants. The surfactants used to make the oil in water emulsions were either of microbial or chemical origin. Oxidation rates of resting bacteria oxidising various crude oil in water emulsions were measured by Warburg respirometry. The emulsions were compared with non-emulsified oil to see which was the preferred substrate. The bacteria were pregrown to both the exponential and stationary phase of growth before harvesting and preparation for the Warburg experiments. 123 refs., 4 figs., 14 tabs.

  18. Potential for plant growth promotion by a consortium of stress-tolerant 2,4-dinitrotoluene-degrading bacteria: isolation and characterization of a military soil.

    Science.gov (United States)

    Thijs, Sofie; Weyens, Nele; Sillen, Wouter; Gkorezis, Panagiotis; Carleer, Robert; Vangronsveld, Jaco

    2014-07-01

    The presence of explosives in soils and the interaction with drought stress and nutrient limitation are among the environmental factors that severely affect plant growth on military soils. In this study, we seek to isolate and identify the cultivable bacteria of a 2,4-dinitrotoluene (DNT) contaminated soil (DS) and an adjacent grassland soil (GS) of a military training area aiming to isolate new plant growth-promoting (PGP) and 2,4-DNT-degrading strains. Metabolic profiling revealed disturbances in Ecocarbon use in the bare DS; isolation of cultivable strains revealed a lower colony-forming-unit count and a less diverse community associated with DS in comparison with GS. New 2,4-DNT-tolerant strains were identified by selective enrichments, which were further characterized by auxanography for 2,4-DNT use, resistance to drought stress, cold, nutrient starvation and PGP features. By selecting multiple beneficial PGP and abiotic stress-resistant strains, efficient 2,4-DNT-degrading consortia were composed. After inoculation, consortium UHasselt Sofie 3 with seven members belonging to Burkholderia, Variovorax, Bacillus, Pseudomonas and Ralstonia species was capable to successfully enhance root length of Arabidopsis under 2,4-DNT stress. After 9 days, doubling of main root length was observed. Our results indicate that beneficial bacteria inhabiting a disturbed environment have the potential to improve plant growth and alleviate 2,4-DNT stress.

  19. Steam explosion pretreatment of wheat straw to improve methane yields: investigation of the degradation kinetics of structural compounds during anaerobic digestion.

    Science.gov (United States)

    Theuretzbacher, Franz; Lizasoain, Javier; Lefever, Christopher; Saylor, Molly K; Enguidanos, Ramon; Weran, Nikolaus; Gronauer, Andreas; Bauer, Alexander

    2015-03-01

    Wheat straw can serve as a low-cost substrate for energy production without competing with food or feed production. This study investigated the effect of steam explosion pretreatment on the biological methane potential and the degradation kinetics of wheat straw during anaerobic digestion. It was observed that the biological methane potential of the non steam exploded, ground wheat straw (276 l(N) kg VS(-1)) did not significantly differ from the best steam explosion treated sample (286 l(N) kg VS(-1)) which was achieved at a pretreatment temperature of 140°C and a retention time of 60 min. Nevertheless degradation speed was improved by the pretreatment. Furthermore it was observed that compounds resulting from chemical reactions during the pretreatment and classified as pseudo-lignin were also degraded during the anaerobic batch experiments. Based on the rumen simulation technique, a model was developed to characterise the degradation process.

  20. Selection of oleuropein-degrading lactic acid bacteria strains isolated from fermenting Moroccan green olives

    Energy Technology Data Exchange (ETDEWEB)

    Ghabbour, N.; Lamzira, Z.; Thonart, P.; Cidalia, P.; Markaouid, M.; Asehraoua, A.

    2011-07-01

    A total of 177 strains of lactic acid bacteria (LAB) were isolated from early-stage Moroccan Picholine green olive fermentation, including Lactobacillus plantarum (44.63%), Lactobacillus pentosus (25.99%), Lactobacillus brevis (9.61%) and Pediococcus pentosaceus (19.77%). All the isolates were screened for their tolerance to olive leaf extract and oleuropein. Most of the isolates (85.3%) were found able to degrade oleuropein, when evaluated by either oleuropein or 5-Bromo-4-chloro-3-indolyl {beta}-D-glucuronide (X-Gluc) as substrates. The biodegradation capacity of the selected strains of each species was confirmed by HPLC analysis. (Author).

  1. Lignin distribution in waterlogged archaeological Picea abies (L.) Karst degraded by erosion bacteria

    DEFF Research Database (Denmark)

    Pedersen, Nanna Bjerregaard; Schmitt, Uwe Schmitt; Koch, Gerald

    2014-01-01

    degraded S2 showed a varied lignin distribution as evidenced by the different local UV-absorbance intensities. However, evaluation of UV-absorbance line spectra of RM revealed no change in conjugation of the aromatic ring system. Presence of RM with both very low and very high lignin absorbances showed......The lignin distribution in poles of waterlogged archaeological Picea abies (L.) Karst, which was decayed by erosion bacteria (EB) under anoxic conditions for approximately 400 years, was topochemically identified by transmission electron microscopy (TEM) and high resolution UV...... evidence for disassembly of lignin during degradation combined with aggregation of lignin fragments and physical movement of these fractions. In contrast to TEM analysis, locally decreasing lignin content was found by UMSP in CML regions....

  2. Molecular identification of the isolated diesel degrading bacteria and optimization studies

    Directory of Open Access Journals (Sweden)

    Janani Prathiba G

    2014-08-01

    Full Text Available Normal 0 false false false EN-US X-NONE X-NONE MicrosoftInternetExplorer4 Diesel, a refinery product of crude oil constitutes a major source of pollution in our environment. Poor solubility in water and the higher content in sediments make diesel a potential water pollutant. Bioremediation of contaminated aquatic and soil environments has arisen as an effective technology, with a range of advantages compared to more traditional methods. A total of 9 bacteria were isolated from three petroleum contaminated soil samples and isolate 3 of sample 1 showed maximum degradation potential of diesel in both primary and secondary screening tests. Hence, it was subjected for 16srDNA study and sequence alignment by BLASTN identified the isolate as Pseudomonas aeruginosa strain KEB24. The reaction conditions for efficient diesel degradation by the isolate were optimized.

  3. Modelling TCE degradation by a mixed culture of methane-oxidizing bacteria

    DEFF Research Database (Denmark)

    Broholm, Kim; Christensen, Thomas Højlund; Jensen, Bjørn K.

    1992-01-01

    A model describing the growth of bacteria and the degradation of methane and trichloroethylene (TCE) based on the concept of competitive inhibition is proposed. The model has been applied to laboratory batch experiments representing different initial TCE concentrations (50–4300 μg/l) and initial...... methane concentrations (0.53–3.2 mg/l). The proposed model simulated successfully the data obtained for initial methane concentration (less than 1.8 mg/l), causing constant experimental growth conditions during the experiments. This indicates that the interactions between methane and TCE degradation can...... be explained as competitive inhibition. The model simulations of the results from the experiments with the highest initial methane concentration of 3.2 mg/l failed, supposedly because the growth conditions changed during the experiments. The proposed model is a useful engineering tool for design of treatment...

  4. Isolation and Identification of Carcinogen Acenaphthene-Degrading Endemic Bacteria from Crude Oil Contaminated Soils around Abadan Refinery

    Directory of Open Access Journals (Sweden)

    Farshid Kafilzadeh

    2012-12-01

    Full Text Available Background and Objective: PAHs are non-polar organic compounds consisting of two or more fused benzene multi-rings. Among these compounds, acenaphthene is a multi-ring hydrocarbon that occurs abundantly in nature. Use of microorganisms to clean the contaminations of soil can be cheap and effective. The most important acenaphthene-degrading bacteria are pseudomonas, micrococcus, and Bacillus. The goal of this study was to isolate and identify the bacteria which degrade acenaphthene in soils around Abadan Refinery and to investigate the relation between the levels of environmental pollution with acenaphthene. Materials and Methods: Soil samples were collected from three areas around Abadan Refinery. The number of the bacteria was counted on the nutrient agar culture with and without acenaphthene. Isolation of the bacteria was done by culturing the samples on acenaphthene broth with a mineral-salt medium, and on an acenaphthene agar medium. Then, the bacteria were identified via biochemical diagnostic tests. Results: The logarithm average of the bacteria was 4.786 ± 0.073 at a medium with acenaphthene, which was 6.671 ± 0.073 less than that of the control medium. The maximum number of degrading bacteria was 7.089 ± 0.089 at Station C, and the minimum number of the degrading bacteria was 4.485 ± 0.089 at Station B. In this study, Bacillus sp, Micrococcus Luteus, Corynebacterium sp, Staphylococcus epidermidis, and Pseudomonas sp bacteria were isolated and identified in terms of frequency, respectively. Conclusion: The results of this study showed that the soil around Abadan Refinery contained a great number of acenaphthene degrading bacteria, especially Bacillus and Micrococcus.

  5. Performance and dye-degrading bacteria isolation of a hybrid membrane process

    Energy Technology Data Exchange (ETDEWEB)

    You, Sheng-Jie, E-mail: sjyou@cycu.edu.tw [Department of Bioenvironmental Engineering and R and D Center for Membrane Technology, Chung Yuan Christian University, No. 200, Rd. Chung-Pei, Chungli 320, Taiwan (China); Teng, Jun-Yu, E-mail: nickprometheus@yahoo.com.tw [Department of Civil Engineering, Chung Yuan Christian University, Chungli 320, Taiwan (China)

    2009-12-15

    Textile dyeing wastewater contains harmful compounds, which are toxic to both marine organisms and human beings if it discharged into an aquatic environmental without suitable treatment. In this study, the wastewater containing the azo dye, Reactive Black 5 (RB5), was partially treated in an anaerobic sequencing batch reactor which was further treated either in an aerobic membrane bioreactors (AOMBR) or in combined aerobic membrane bioreactor/reverse osmosis (AOMBR/RO) process. The results showed that in the anaerobic sequencing batch reactor the RB5 dye was degraded to form aromatic amine intermediate metabolites, which were further mineralized in the AOMBR. It was also observed that although all effluents from the AOMBR and AOMBR/RO processes met the Taiwan EPA's effluent criteria, irrespective of which membranes were used in the aerobic tank, the effluent from the AOMBR/RO process met the criteria for reuse for toilet flushing, landscaping, irrigation, and cooling water purposes, where as the AOMBR effluent only met the criteria for cooling water due to incomplete color removal. Five anaerobic high dye-degrading bacteria were isolated, which were identified to be the same species of Lactococcus lactis by 16S rRNA sequencing. The L. lactis showed complete degradation of RB5 and further studies showed that it can also able to degrade Reactive Red 120 and Reactive Yellow 84 efficiently within 6 h.

  6. Anaerobic benzene degradation by Gram-positive sulfate-reducing bacteria.

    Science.gov (United States)

    Abu Laban, Nidal; Selesi, Drazenka; Jobelius, Carsten; Meckenstock, Rainer U

    2009-06-01

    Despite its high chemical stability, benzene is known to be biodegradable with various electron acceptors under anaerobic conditions. However, our understanding of the initial activation reaction and the responsible prokaryotes is limited. In the present study, we enriched a bacterial culture that oxidizes benzene to carbon dioxide under sulfate-reducing conditions. Community analysis using terminal restriction fragment length polymorphism, 16S rRNA gene sequencing and FISH revealed 95% dominance of one phylotype that is affiliated to the Gram-positive bacterial genus Pelotomaculum showing that sulfate-reducing Gram-positive bacteria are involved in anaerobic benzene degradation. In order to get indications of the initial activation mechanism, we tested the substrate utilization, performed cometabolism tests and screened for putative metabolites. Phenol, toluene, and benzoate could not be utilized as alternative carbon sources by the benzene-degrading culture. Cometabolic degradation experiments resulted in retarded rates of benzene degradation in the presence of phenol whereas toluene had no effect on benzene metabolism. Phenol, 2-hydroxybenzoate, 4-hydroxybenzoate, and benzoate were identified as putative metabolites in the enrichment culture. However, hydroxylated aromatics were shown to be formed abiotically. Thus, the finding of benzoate as an intermediate compound supports a direct carboxylation of benzene as the initial activation mechanism but additional reactions leading to its formation cannot be excluded definitely.

  7. Oxalate-Degrading Capacities of Gastrointestinal Lactic Acid Bacteria and Urinary Tract Stone Formation

    Directory of Open Access Journals (Sweden)

    Mohammad Kargar

    2013-10-01

    Full Text Available Background: Calcium oxalate is one the most significant causes of human kidney stones. Increasing oxalate uptake results in increased urinary oxalate. Elevated urinary oxalate is one the most important causes of kidney stone formation. This study aims to evaluate oxalate-degrading capacity of lactic acid bacteria and its impact on incidence of kidney stone.Materials and Methods: This case-control study was conducted on serum, urinary, and fecal samples. The research population included a total of 200 subjects divided in two equal groups. They were selected from the patients with urinary tract stones, visiting urologist, and also normal people. The level of calcium, oxalate, and citrate in the urinary samples, parathyroid and calcium in the serum samples, and degrading activity of fecal lactobacillus strains of all the subjects were evaluated. Then, data analysis was carried out using SPSS-11.5, χ2 test, Fisher’s exact test, and analysis of variance. Results: The results revealed that the patients had higher urinary level of oxalate and calcium, as well as higher serum level of parathyroid hormone than normal people. In contrast, urinary level of citrate was higher in normal people. In addition, there was a significant difference between the oxalate-degrading capacities of lactobacillus isolated from the patients and their normal peers.Conclusion: Reduction of digestive lactobacillus-related oxalate-degrading capacity and increased serum level of parathyroid hormone can cause elevated urinary level of oxalate and calcium in people with kidney stone.

  8. Degradation of Polycyclic Aromatic Hydrocarbon Pyrene by Biosurfactant-Producing Bacteria Gordonia cholesterolivorans AMP 10

    Directory of Open Access Journals (Sweden)

    Tri Handayani Kurniati

    2016-12-01

    Full Text Available Pyrene degradation and biosurfactant activity by a new strain identified as Gordonia cholesterolivorans AMP 10 were studied. The strain grew well and produced effective biosurfactants in the presence of glucose, sucrose, and crude oil. The biosurfactants production was detected by the decreased surface tension of the medium and emulsification activity.  Analysis of microbial growth parameters showed that AMP10 grew best at 50 µg mL-1 pyrene concentration, leading to 96 % degradation of pyrene within 7 days. The result of nested PCR analysis revealed that this isolate possessed the nahAc gene which encodes dioxygenase enzyme for initial degradation of Polycyclic Aromatic Hydrocarbon (PAH. Observation of both tensio-active and emulsifying activities indicated that biosurfactants which produced by AMP 10 when grown on glucose could lower the surface tension of medium from 71.3 mN/m to 24.7 mN/m and formed a stable emulsion in used lubricant oil with an emulsification index (E24 of 74%. According to the results, it is suggested that the bacterial isolates G. cholesterolivorans AMP10 are suitable candidates for bioremediation of PAH-contaminated environments.How to CiteKurniati, T. H.,  Rusmana, I. Suryani, A. & Mubarik, N. R. (2016. Degradation of Polycyclic Aromatic Hydrocarbon Pyrene by Biosurfactant-Producing Bacteria Gordonia cholesterolivorans AMP 10. Biosaintifika: Journal of Biology & Biology Education, 8(3, 336-343. 

  9. Isolation and Identification of Sodium Fluoroacetate Degrading Bacteria from Caprine Rumen in Brazil

    Directory of Open Access Journals (Sweden)

    Expedito K. A. Camboim

    2012-01-01

    Full Text Available The objective of this paper was to report the isolation of two fluoroacetate degrading bacteria from the rumen of goats. The animals were adult goats, males, crossbred, with rumen fistula, fed with hay, and native pasture. The rumen fluid was obtained through the rumen fistula and immediately was inoculated 100 μL in mineral medium added with 20 mmol L−1 sodium fluoroacetate (SF, incubated at 39°C in an orbital shaker. Pseudomonas fluorescens (strain DSM 8341 was used as positive control for fluoroacetate dehalogenase activity. Two isolates were identified by 16S rRNA gene sequencing as Pigmentiphaga kullae (ECPB08 and Ancylobacter dichloromethanicus (ECPB09. These bacteria degraded sodium fluoroacetate, releasing 20 mmol L−1 of fluoride ion after 32 hours of incubation in Brunner medium containing 20 mmol L−1 of SF. There are no previous reports of fluoroacetate dehalogenase activity for P. kullae and A. dichloromethanicus. Control measures to prevent plant intoxication, including use of fences, herbicides, or other methods of eliminating poisonous plants, have been unsuccessful to avoid poisoning by fluoroacetate containing plants in Brazil. In this way, P. kullae and A. dichloromethanicus may be used to colonize the rumen of susceptible animals to avoid intoxication by fluoroacetate containing plants.

  10. Phenolic acid degradation potential and growth behavior of lactic acid bacteria in sunflower substrates.

    Science.gov (United States)

    Fritsch, Caroline; Heinrich, Veronika; Vogel, Rudi F; Toelstede, Simone

    2016-08-01

    Sunflower flour provides a high content of protein with a well-balanced amino acid composition and is therefore regarded as an attractive source for protein. The use for human nutrition is hindered by phenolic compounds, mainly chlorogenic acid, which can lead under specific circumstances to undesirable discolorations. In this study, growth behavior and degradation ability of chlorogenic acid of four lactic acid bacteria were explored. Data suggested that significant higher fermentation performances on sunflower flour as compared to sunflower protein concentrate were reached by Lactobacillus plantarum, Pediococcus pentosaceus, Lactobacillus gasseri and Bifidobacterium animalis subsp. lactis. In fermentation with the latter two strains reduced amounts of chlorogenic acid were observed in sunflower flour (-11.4% and -19.8%, respectively), which were more pronounced in the protein concentrate (-50.7% and -95.6%, respectively). High tolerances against chlorogenic acid and the cleavage product quinic acid with a minimum inhibitory concentration (MIC) of ≥20.48 mg/ml after 48 h were recorded for all strains except Bifidobacterium animalis subsp. lactis, which was more sensitive. The second cleavage compound, caffeic acid revealed a higher antimicrobial potential with MIC values of 0.64-5.12 mg/ml. In this proof of concept study, degradation versus inhibitory effect suggest the existence of basic mechanisms of interaction between phenolic acids in sunflower and lactic acid bacteria and a feasible way to reduce the chlorogenic acid content, which may help to avoid undesired color changes.

  11. Phytic acid degrading lactic acid bacteria in tef-injera fermentation.

    Science.gov (United States)

    Fischer, Maren M; Egli, Ines M; Aeberli, Isabelle; Hurrell, Richard F; Meile, Leo

    2014-11-03

    Ethiopian injera, a soft pancake, baked from fermented batter, is preferentially prepared from tef (Eragrostis tef) flour. The phytic acid (PA) content of tef is high and is only partly degraded during the fermentation step. PA chelates with iron and zinc in the human digestive tract and strongly inhibits their absorption. With the aim to formulate a starter culture that would substantially degrade PA during injera preparation, we assessed the potential of microorganisms isolated from Ethiopian household-tef fermentations to degrade PA. Lactic acid bacteria (LAB) were found to be among the dominating microorganisms. Seventy-six isolates from thirteen different tef fermentations were analyzed for phytase activity and thirteen different isolates of seven different species were detected to be positive in a phytase screening assay. In 20-mL model tef fermentations, out of these thirteen isolates, the use of Lactobacillus (L.) buchneri strain MF58 and Pediococcus pentosaceus strain MF35 resulted in lowest PA contents in the fermented tef of 41% and 42%, respectively of its initial content. In comparison 59% of PA remained when spontaneously fermented. Full scale tef fermentation (0.6L) and injera production using L. buchneri MF58 as culture additive decreased PA in cooked injera from 1.05 to 0.34±0.02 g/100 g, representing a degradation of 68% compared to 42% in injera from non-inoculated traditional fermentation. The visual appearance of the pancakes was similar. The final molar ratios of PA to iron of 4 and to zinc of 12 achieved with L. buchneri MF58 were decreased by ca. 50% compared to the traditional fermentation. In conclusion, selected LAB strains in tef fermentations can degrade PA, with L. buchneri MF58 displaying the highest PA degrading potential. The 68% PA degradation achieved by the application of L. buchneri MF58 would be expected to improve human zinc absorption from tef-injera, but further PA degradation is probably necessary if iron absorption has to

  12. The Diversity of PAH-degrading bacteria in a deep-sea water column above the Southwest Indian Ridge

    Directory of Open Access Journals (Sweden)

    Zongze eShao

    2015-08-01

    Full Text Available The bacteria involved in organic pollutant degradation in pelagic deep-sea environments are largely unknown. In this report, the diversity of polycyclic aromatic hydrocarbon ( PAH-degrading bacteria was analyzed in deep-sea water on the Southwest Indian Ridge (SWIR. After enrichment with a PAH mixture (phenanthrene, anthracene, fluoranthene and pyrene, 9 nine bacterial consortia were obtained from depths of 3946 m to 4746 m. PAH degradation occurred to all components of the mixture, but when using a single PAH as the sole carbon and energy source, only phenanthrene can be degraded obviously. This indicates the cometabolism of anthracene, fluoranthene and pyrene with phenanthreneWhile the consortia degraded all four PAHs when supplied in a mixture, when PAHs were tested individually, only phenanthrene supported growth. Thus, degradation of the PAH mixture reflected a cometabolism of anthracene, fluoranthene and pyrene with phenanthrene. Further, both culture-dependent and independent methods revealed many new bacteria involved in PAH degradation. Specifically, the alpha and gamma subclasses of Proteobacteria were confirmed as the major groups within the communities. Additionally, Actinobacteria, the CFB group and Firmicutes were detected. Denaturing Gradient Gel Electrophoresis (DGGE analysis showed that bacteria closely affiliated with Alcanivorax, Novosphingobium and Rhodovulum occurred most frequently in different PAH-degrading consortia. More than half of the isolates (34 of 51 isolates were confirmed to have the ability to grow with the PAH mixture By using general heterotrophic media, 51 bacteria were isolated from the consortia and of these 34 grew with the PAH mixture as a sole carbon source. Of these, isolates most closely related to Alterierythrobacter, Citricella, Erythrobacter, Idiomarina, Lutibacterium, Maricaulis, Marinobacter, Martelella, Pseudidiomarina, Rhodobacter, Roseovarius, Salipiger, Sphingopyxis and Stappia were found to

  13. Importance of Unattached Bacteria and Bacteria Attached to Sediment in Determining Potentials for Degradation of Xenobiotic Organic Contaminants in an Aerobic Aquifer

    DEFF Research Database (Denmark)

    Nielsen, Per Henning; Albrechtsen, Hans-Jørgen; Christensen, Thomas Højlund;

    1992-01-01

    , was attached to the groundwater sediment (18 x 106 to 25 x 106 cells per g [dry weight]), and only a minor part was unattached in the groundwater (0.6 x 106 to 5.5 x 106 cells per ml). Experiments involving aquifer sediment suspensions showed identical degradation potentials in the laboratory and in the field...... for studying the degradation potential for xenobiotic organic contaminants should contain sediment to obtain the highest numbers of bacteria as well as the broadest and most stable degradation. When only the fine (silt- and clay-size) particles of the sediment were used, nearly the same advantages were gained...

  14. Aquatic Organisms and Petroleum Hydrocarbon Degrading Bacteria Associated with Their Digestive System

    Directory of Open Access Journals (Sweden)

    Janina Šyvokienė

    2013-12-01

    Full Text Available Laboratory investigation was carried out on the abundance and composition of bacteria in the digestive system of a total of 35 specimens, including bivalve molluscs, i.e. swan mussel Anodonta cygnea (Linnaeus, 1758 from Lake Spėra (Širvintos district and swollen river mussel Unio tumidus (Philipson, 1788 from the Curonian Lagoon near Juodkrantė, zebra mussel (Dreissena polymorpha from the Curonian Lagoon near Juodkrantė and an anostracan – Chirocephalus josephinae (Grube, 1853 from a pond in Ilčiukai village, Utena district, and in the water of related water bodies. Studies on bivalve molluscs (swan mussel and swollen river mussel, zebra mussel and an anostracan – Chirocephalus josephinae, as well as microbiological investigation of water demonstrated that the number of microorganisms in the digestive system of mollusc and anostracan species fluctuated and varied between different species and water bodies. The greatest percentage of HDB among total heterotrophic bacteria was found in the digestive system of swollen river mussels (21.53% and in zebra mussels (19.99% caught in the Curonian Lagoon and in the water of the lagoon (24%. A considerably smaller percentage of HDB was detected in the digestive system of swan mussels from Lake Spėra (17.6% and in the water of the lake (16.66%. The smallest percentage of HDB was found in the digestive system of Chirocephalus josephinae (6.63% and in the water of the Ilčiukai pond (2.72%. According to the values of abundance of petroleum hydrocarbon-degrading bacteria (HDB and total coliform bacteria (TCFB in the digestive system of aquatic organisms we can state that the water ecosystem of Ilčiukai pond was the least contaminated with petroleum, its products and sewage water, and the Curonian Lagoon water ecosystem was the most contaminated. Abundance of petroleum hydrocarbons degrading bacteria could be used as a bioindicator reflecting the level of ecosystem pollution petroleum and its

  15. Correlations between PAH bioavailability, degrading bacteria, and soil characteristics during PAH biodegradation in five diffusely contaminated dissimilar soils.

    Science.gov (United States)

    Crampon, M; Bureau, F; Akpa-Vinceslas, M; Bodilis, J; Machour, N; Le Derf, F; Portet-Koltalo, F

    2014-01-01

    The natural biodegradation of seven polycyclic aromatic hydrocarbons (PAHs) by native microorganisms was studied in five soils from Normandy (France) from diffusely polluted areas, which can also pose a problem in terms of surfaces and amounts of contaminated soils. Bioavailability tests using cyclodextrin-based extractions were performed. The natural degradation of low molecular weight (LMW) PAHs was not strongly correlated to their bioavailability due to their sorption to geosorbents. Conversely, the very low degradation of high molecular weight (HMW) PAHs was partly correlated to their poor availability, due to their sorption on complexes of organic matter and kaolinites or smectites. A principal component analysis allowed us to distinguish between the respective degradation behaviors of LMW and HMW PAHs. LMW PAHs were degraded in less than 2-3 months and were strongly influenced by the relative percentage of phenanthrene-degrading bacteria over total bacteria in soils. HMW PAHs were not significantly degraded, not only because they were less bioavailable but also because of a lack of degrading microorganisms. Benzo[a]pyrene stood apart since it was partly degraded in acidic soils, probably because of a catabolic cooperation between bacteria and fungi.

  16. Detection of the spectroscopic signatures of explosives and their degradation products

    Science.gov (United States)

    Florian, Vivian; Cabanzo, Andrea; Baez, Bibiana; Correa, Sandra; Irrazabal, Maik; Briano, Julio G.; Castro, Miguel E.; Hernandez-Rivera, Samuel P.

    2005-06-01

    Detection and removal of antipersonnel and antitank landmines is a great challenge and a worldwide enviromental and humanitarian problem. Sensors tuned on the spectroscopic signature of the chemicals released from mines are a potential solution. Enviromental factors (temperature, relative humidity, rainfall precipitation, wind, sun irradiation, pressure, etc.) as well as soil characteristics (water content, compaction, porosity, chemical composition, particle size distribution, topography, vegetation, etc), have a direct impact on the fate and transport of the chemicals released from landmines. Chemicals such as TNT, DNT and their degradation products, are semi-volatile, and somewhat soluble in water. Also, they may adsorb strongly to soil particles, and are susceptible to degradation by microorganisms, light, or chemical agents. Here we show an experimental procedure to quantify the effect of the above variables on the spectroscopic signature. A number of soil tanks under controlled conditions are used to study the effect of temperature, water content, relative humidity and light radiation.

  17. Production of rhamnolipids and diesel oil degradation by bacteria isolated from soil contaminated by petroleum.

    Science.gov (United States)

    Leite, Giuseppe G F; Figueirôa, Juciane V; Almeida, Thiago C M; Valões, Jaqueline L; Marques, Walber F; Duarte, Maria D D C; Gorlach-Lira, Krystyna

    2016-03-01

    Biosurfactants are microbial secondary metabolites. The most studied are rhamnolipids, which decrease the surface tension and have emulsifying capacity. In this study, the production of biosurfactants, with emphasis on rhamnolipids, and diesel oil degradation by 18 strains of bacteria isolated from waste landfill soil contaminated by petroleum was analyzed. Among the studied bacteria, gram-positive endospore forming rods (39%), gram positive rods without endospores (17%), and gram-negative rods (44%) were found. The following methods were used to test for biosurfactant production: oil spreading, emulsification, and hemolytic activity. All strains showed the ability to disperse the diesel oil, while 77% and 44% of the strains showed hemolysis and emulsification of diesel oil, respectively. Rhamnolipids production was observed in four strains that were classified on the basis of the 16S rRNA sequences as Pseudomonas aeruginosa. Only those strains showed the rhlAB gene involved in rhamnolipids synthesis, and antibacterial activity against Escherichia coli, P. aeruginosa, Staphylococcus aureus, Bacillus cereus, Erwinia carotovora, and Ralstonia solanacearum. The highest production of rhamnolipids was 565.7 mg/L observed in mineral medium containing olive oil (pH 8). With regard to the capacity to degrade diesel oil, it was observed that 7 strains were positive in reduction of the dye 2,6-dichlorophenolindophenol (2,6-DCPIP) while 16 had the gene alkane mono-oxygenase (alkB), and the producers of rhamnolipids were positive in both tests. Several bacterial strains have shown high potential to be explored further for bioremediation purposes due to their simultaneous ability to emulsify, disperse, and degrade diesel oil. © 2015 American Institute of Chemical Engineers Biotechnol. Prog., 32:262-270, 2016.

  18. Degradation pathways of low-ethoxylated nonylphenols by isolated bacteria using an improved method.

    Science.gov (United States)

    Zhang, Yu; Gu, Xin; Zhang, Jing; Yang, Min

    2014-01-01

    Nonylphenol ethoxylates (NPEOs) with low ethoxylation degree (NPav₂EO; containing two ethoxy units on average) and estrogenic properties are the intermediate products of nonionic surfactant NPEOs. To better understand the environmental fate of low-ethoxylated NPEOs, phylogenetically diverse low-ethoxylated NPEO-degrading bacteria were isolated from activated sludge using gellan gum as the gelling reagent. Four isolates belonging to four genera, i.e., Pseudomonas sp. NP522b in γ-Proteobacteria, Variovorax sp. NP427b and Ralstonia sp. NP47a in β-Proteobacteria, and Sphingomonas sp. NP42a in α-Proteobacteria were acquired. Ralstonia sp. NP47a or Sphingomonas sp. NP42a, have not been reported for the degradation of low-ethoxylated NPEOs previously. The biotransformation pathways of these isolates were investigated. The first three strains (NP522b, NP427b, and NP47a) exhibited high NPav₂EO oxidation ability by oxidizing the polyethoxy (EO) chain to form low-ethoxylated nonylphenoxy carboxylates, and then further oxidizing the alkyl chain to form carboxyalkylphenol polyethoxycarboxylates. Furthermore, Sphingomonas sp. NP42a degraded NPav2EO through a nonoxidative pathway with nonylphenol monoethoxylate as the dominant product.

  19. Genetic characterization of caffeine degradation by bacteria and its potential applications.

    Science.gov (United States)

    Summers, Ryan M; Mohanty, Sujit K; Gopishetty, Sridhar; Subramanian, Mani

    2015-05-01

    The ability of bacteria to grow on caffeine as sole carbon and nitrogen source has been known for over 40 years. Extensive research into this subject has revealed two distinct pathways, N-demethylation and C-8 oxidation, for bacterial caffeine degradation. However, the enzymological and genetic basis for bacterial caffeine degradation has only recently been discovered. This review article discusses the recent discoveries of the genes responsible for both N-demethylation and C-8 oxidation. All of the genes for the N-demethylation pathway, encoding enzymes in the Rieske oxygenase family, reside on 13.2-kb genomic DNA fragment found in Pseudomonas putida CBB5. A nearly identical DNA fragment, with homologous genes in similar orientation, is found in Pseudomonas sp. CES. Similarly, genes for C-8 oxidation of caffeine have been located on a 25.2-kb genomic DNA fragment of Pseudomonas sp. CBB1. The C-8 oxidation genes encode enzymes similar to those found in the uric acid metabolic pathway of Klebsiella pneumoniae. Various biotechnological applications of these genes responsible for bacterial caffeine degradation, including bio-decaffeination, remediation of caffeine-contaminated environments, production of chemical and fuels and development of diagnostic tests have also been demonstrated.

  20. Flow injection analysis of organic peroxide explosives using acid degradation and chemiluminescent detection of released hydrogen peroxide.

    Science.gov (United States)

    Mahbub, Parvez; Zakaria, Philip; Guijt, Rosanne; Macka, Mirek; Dicinoski, Greg; Breadmore, Michael; Nesterenko, Pavel N

    2015-10-01

    The applicability of acid degradation of organic peroxides into hydrogen peroxide in a pneumatically driven flow injection system with chemiluminescence reaction with luminol and Cu(2+) as a catalyst (FIA-CL) was investigated for the fast and sensitive detection of organic peroxide explosives (OPEs). The target OPEs included hexamethylene triperoxide diamine (HMTD), triacetone triperoxide (TATP) and methylethyl ketone peroxide (MEKP). Under optimised conditions maximum degradations of 70% and 54% for TATP and HMTD, respectively were achieved at 162 µL min(-1), and 9% degradation for MEKP at 180 µL min(-1). Flow rates were precisely controlled in this single source pneumatic pressure driven multi-channel FIA system by model experiments on mixing of easily detectable component solutions. The linear range for detection of TATP, HMTD and H2O2 was 1-200 µM (r(2)=0.98-0.99) at both flow rates, while that for MEKP was 20-200 µM (r(2)=0.97) at 180 µL min(-1). The detection limits (LODs) obtained were 0.5 µM for TATP, HMTD and H2O2 and 10 µM for MEKP. The detection times varied from 1.5 to 3 min in this FIA-CL system. Whilst the LOD for H2O2 was comparable with those reported by other investigators, the LODs and analysis times for TATP and HMTD were superior, and significantly, this is the first time the detection of MEKP has been reported by FIA-CL.

  1. Sequential Isolation of Saturated, Aromatic, Resinic and Asphaltic Fractions Degrading Bacteria from Oil Contaminated Soil in South Sumatera

    Directory of Open Access Journals (Sweden)

    Pingkan Aditiawati

    2012-04-01

    Full Text Available Sequential isolation has been conducted to obtain isolates of saturated, aromatic, resin, and asphaltene fractions degrading bacteria from oil contaminated sites. Five soil samples were collected from South Sumatera. These were analyzed using soil extract medium enriched with oil recovery or Remaining-Oil recovery Degradated (ROD as sole carbon and energy sources according to the isolation stage. ROD at the end of every isolation stage analyzed oil fractions by use of the SARA analysis method. Six isolates of bacteria have been selected, one isolate was fraction saturates degrading bacteria that are Mycobacterium sp. T1H2D4-7 at degradation rate 0.0199 mgs/h with density 8.4x106 cfu/g from stage I. The isolate T2H1D2-4, identified as Pseudomonas sp. was fraction aromatics degrading bacteria at accelerate 0.0141 mgs/h with density 5.1x106 cfu/g are obtained at stage II. Two isolates namely Micrococcus sp. T3H2D4-2 and Pseudomonas sp. T1H1D5-5 were fraction resins degrading bacteria by accelerate 0.0088 mgs/h at density 5.6x106 cfu/g and 0.0089 mgs/h at density 5.7x106 cfu/g are obtained at stage III. Isolation of stage IV has been obtained two isolates Pseudomonas sp. T4H1D3-1and Pseudomonas sp. T4H3D5-4 were fraction asphaltenes degrading bacteria by accelerate 0.0057 mgs/h at density 5.6x106 cfu/g and accelerate 0.0058 mgs/h at density 5.7x106 cfu/g.

  2. Occurrence of Tn4371-related mobile elements and sequences in (chloro)biphenyl-degrading bacteria.

    Science.gov (United States)

    Springael, D; Ryngaert, A; Merlin, C; Toussaint, A; Mergeay, M

    2001-01-01

    Tn4371, a 55-kb transposable element involved in the degradation and biphenyl or 4-chlorobiphenyl identified in Ralstonia eutropha A5, displays a modular structure including a phage-like integrase gene (int), a Pseudomonas-like (chloro)biphenyl catabolic gene cluster (bph), and RP4- and Ti-plasmid-like transfer genes (trb) (C. Merlin, D. Springael, and A. Toussaint, Plasmid 41:40-54, 1999). Southern blot hybridization was used to examine the presence of different regions of Tn4371 in a collection of (chloro)biphenyl-degrading bacteria originating from different habitats and belonging to different bacterial genera. Tn4371-related sequences were never detected on endogenous plasmids. Although the gene probes containing only bph sequences hybridized to genomic DNA from most strains tested, a limited selection of strains, all beta-proteobacteria, displayed hybridization patterns similar to the Tn4371 bph cluster. Homology between Tn4371 and DNA of two of those strains, originating from the same area as strain A5, extended outside the catabolic genes and covered the putative transfer region of Tn4371. On the other hand, none of the (chloro)biphenyl degraders hybridized with the outer left part of Tn4371 containing the int gene. The bph catabolic determinant of the two strains displaying homology to the Tn4371 transfer genes and a third strain isolated from the A5 area could be mobilized to a R. eutropha recipient, after insertion into an endogenous or introduced IncP1 plasmid. The mobilized DNA of those strains included all Tn4371 homologous sequences previously identified in their genome. Our observations show that the bph genes present on Tn4371 are highly conserved between different (chloro)biphenyl-degrading hosts, isolated globally but belonging mainly to the beta-proteobacteria. On the other hand, Tn4371-related mobile elements carrying bph genes are apparently only found in isolates from the environment that provided the Tn4371-bearing isolate A5.

  3. Toxicity of tetracyclines and tetracycline degradation products to environmentally relevant bacteria, including selected tetracycline-resistant bacteria

    DEFF Research Database (Denmark)

    Halling-Sørensen, B.; Sengeløv, G.; Tjørnelund, J.

    2002-01-01

    Tetracyclines used in veterinary therapy invariably will find their way as parent compound and degradation products to the agricultural field. Major degradation products formed due to the limited stability of parent tetracyclines (tetracycline, chlortetracycline, and oxytetracycline) in aqueous s...

  4. Influence of compost amendments on the diversity of alkane degrading bacteria in hydrocarbon contaminated soils

    Directory of Open Access Journals (Sweden)

    Michael eSchloter

    2014-03-01

    Full Text Available Alkane degrading microorganisms play an important role for bioremediation of petrogenic contaminated environments. In this study, we investigated the effects of compost addition on the diversity of alkane monooxygenase gene (alkB harboring bacteria in oil-contaminated soil originated from an industrial zone in Celje, Slovenia, to improve our understanding about the bacterial community involved in alkane degradation and the effects of amendments. Soil without any amendments (control soil and soil amended with compost of different maturation stages, i 1 year and ii 2 weeks, were incubated under controlled conditions in a microcosm experiment and sampled after 0, 6, 12 and 36 weeks of incubation. By using quantitative real-time PCR higher number of alkB genes could be detected in soil samples with compost compared to the control soil after 6, 12 and 36 weeks mainly if the less maturated compost was added. To get an insight into the composition of the alkB harboring microbial communities, we performed next generation sequencing of alkB gene fragment amplicons. Richness and diversity of alkB gene harboring prokaryotes was higher in soil mixed with compost compared to control soil after 6, 12 and 36 weeks again with stronger effects of the less maturated compost. Comparison of communities detected in different samples and time points based on principle component analysis revealed that the addition of compost in general stimulated the abundance of alkB harboring Actinobacteria during the experiment independent from the maturation stage of the compost compared to the control soils. In addition alkB harboring proteobacteria like Shewanella or Hydrocarboniphaga as well as proteobacteria of the genus Agrobacterium responded positively to the addition of compost to soil The amendment of the less maturated compost resulted in addition in a large increase of alkB harboring bacteria of the Cytophaga group (Microscilla mainly at the early sampling

  5. Isolation and characterization of alkane degrading bacteria from petroleum reservoir waste water in Iran (Kerman and Tehran provenances).

    Science.gov (United States)

    Hassanshahian, Mehdi; Ahmadinejad, Mohammad; Tebyanian, Hamid; Kariminik, Ashraf

    2013-08-15

    Petroleum products spill and leakage have become two major environmental challenges in Iran. Sampling was performed in the petroleum reservoir waste water of Tehran and Kerman Provinces of Iran. Alkane degrading bacteria were isolated by enrichment in a Bushnel-Hass medium, with hexadecane as sole source of carbon and energy. The isolated strains were identified by amplification of 16S rDNA gene and sequencing. Specific primers were used for identification of alkane hydroxylase gene. Fifteen alkane degrading bacteria were isolated and 8 strains were selected as powerful degradative bacteria. These 8 strains relate to Rhodococcus jostii, Stenotrophomonas maltophilia, Achromobacter piechaudii, Tsukamurella tyrosinosolvens, Pseudomonas fluorescens, Rhodococcus erythropolis, Stenotrophomonas maltophilia, Pseudomonas aeruginosa genera. The optimum concentration of hexadecane that allowed high growth was 2.5%. Gas chromatography results show that all strains can degrade approximately half of hexadecane in one week of incubation. All of the strains have alkane hydroxylase gene which are important for biodegradation. As a result, this study indicates that there is a high diversity of degradative bacteria in petroleum reservoir waste water in Iran.

  6. Microcosm studies of subsurface PAH-degrading bacteria from a former manufactured gas plant

    Science.gov (United States)

    Durant, Neal D.; Wilson, Liza P.; Bouwer, Edward J.

    1995-01-01

    A study was conducted to evaluate the potential for natural in situ biodegradation of polycyclic aromatic hydrocarbons (PAH's) in the subsurface at the site of a former manufactured gas plant. Fifty-seven samples of unconsolidated subsurface sediments were aseptically obtained from five boreholes across the site. Bacteria capable of aerobically degrading PAH's without an acclimation period were detected throughout shallow (2.7 m) and deep (24.7 m) areas of the subsurface in both relatively clean (biodegradation (7±1% to 13±2%) in the presence of N03 was observed in two samples. Compound removals were first order with respect to substrate concentration during the first 10-15 days of incubation. Compound biodegradation plateaued in the later stages of incubation (15-40 days), most likely from diminishing bioavailability and nutrient and oxygen depletion. Population densities in the sediments were typically low, with viable aerobic counts ranging from 0 to 10 5 CFU gdw -1, viable anaerobic counts ranging from 0 to 104 CFU gdw -1, and total counts (AODC) usually 10-fold greater than viable counts. Total counts exhibited a strong ( p Bacteria were metabolically active in samples from groundwaters with low pH (3.7) and high naphthalene concentrations (11,000 μg L -1). Data from these enumeration and microcosm studies suggest that natural in situ biodegradation is occurring at the site.

  7. Co-culturing Effects of Coexisting Bacteria on Wood Degradation by Trametes versicolor.

    Science.gov (United States)

    Kamei, Ichiro

    2017-01-01

    White-rot fungi are the main decomposers of wood cell-wall polymer in forest ecosystems. Little is known, however, about the interactions between white-rot fungi and other coexisting microorganisms in decayed wood. A white-rot fungus, Trametes versicolor strain TN6F, was isolated from a fruit body, and 44 strains of coexisting cultivable bacteria were isolated from its substrate, natural white rot-decayed wood. The effects of these bacteria on fungal growth were examined by an in vitro confrontation growth assay. Among the isolates, nine bacterial strains inhibited the growth of strain TN6F, while 35 strains did not affect the growth of TN6F. However, when co-cultured with strain TN6F on wood powder, many bacterial strains promoted the weight loss of the substrate. A subsequent chemical composition analysis showed that co-culturing accelerated delignification. Higher laccase activity was detected when strain TN6F was co-cultured on wood powder medium with bacterial strains TN6W-26 or TN6W-27. These results indicate that some bacterial strains might promote wood degradation.

  8. Growth, induction, and substrate specificity of dehydroabietic acid-degrading bacteria isolated from a kraft mill effluent enrichment.

    Science.gov (United States)

    Bicho, P A; Martin, V; Saddler, J N

    1995-09-01

    We investigated resin acid degradation in five bacteria isolated from a bleach kraft mill effluent enrichment. All of the bacteria grew on dehydroabietic acid (DHA), a resin acid routinely detected in pulping effluents, or glycerol as the sole carbon source. None of the strains grew on acetate or methanol. Glycerol-grown, high-density, resting-cell suspensions were found to undergo a lag for 2 to 4 h before DHA degradation commenced, suggesting that this activity was inducible. This was further investigated by spiking similar cultures with tetracycline, a protein synthesis inhibitor, at various times during the DHA disappearance curve. Cultures to which the antibiotic was added prior to the lag did not degrade DHA. Those that were spiked with the antibiotic after the lag phase (4 h) degraded DHA at the same rate as did controls with no added tetracycline. Therefore, de novo protein synthesis was required for DHA biodegradation, confirming that this activity is inducible. The five strains were also evaluated for their ability to degrade other resin acids. All strains behaved in a similar fashion. Unchlorinated abietane-type resin acids (abietic acid, DHA, and 7-oxo-DHA) were completely degraded within 7 days, whereas pimarane resin acids (sandaracopimaric acid, isopimaric acid, and pimaric acid) were poorly degraded (25% or less). Chlorination of DHA affected biodegradation, with both 12,14-dichloro-DHA and 14-chloro-DHA showing resistance to degradation. However, 50 to 60% of the 12-chloro-DHA was consumed within the same period.

  9. Isolation, Identification and Growth Characteristics of Four Tribenuron-methyl Degrading Bacterias

    Directory of Open Access Journals (Sweden)

    TIAN Shuang

    2014-10-01

    Full Text Available Four bacterias named B1, B2, B3 and B4 which were able to degrade tribenuron-methyl, were isolated from the soil of long term applied with tribenuron-methyl by enrichment culture. Based on physiological and biochemical characteristics and 16S rDNA sequence anal-ysis, the strain B1 was identified preliminarily as Pseudomonas aeruginosa, the strain B2 was identified preliminarily as Delftia sp., the strain B3 was identified preliminarily as Microbacterium sp., and the strain B4 was identified preliminarily as Alcaligenes sp.The effect of tempera-ture, initial pH, inoculation amount, initial concentration of tribenuron-methyl, medium volume, nitrogen source, carbon source and Mg 2+concentration on growth efficiencies was studied. The results showed that B1 optimal temperature was 35 ℃, the rest were 30 ℃. B3 optimal initial pH was 8.0, the others were 7.0. B1 and B3 optimal inoculation amount were 15%, B2 and B4 optimal inoculation amount were 10%.B3 optimal initial concentration of tribenuron-methyl was 100 mg· L-1, the other three were 200 mg· L -1. The four bacterias optimal medium volume all were 75 mL, optimal nitrogen source were ammonium nitrate and optimal carbon source were glucose. B2 optimal Mg 2+ concentra-tion was 100 mg·L -1, the others were 200 mg·L v. B1 and B4 optimal sodium chloride concentration were 20 g· L -1 while B2 could grow well from 5 g·L -1 to 30 g·L-1, B3 optimal sodium chloride concentration was 50 g·L -1. The results provide theoretical basis for using bacterias in situ bioremediation of soil pollution of tribenuron-methyl.

  10. Effects of rhamnolipids on cell surface hydrophobicity of PAH degrading bacteria and the biodegradation of phenanthrene.

    Science.gov (United States)

    Zhao, Zhenyong; Selvam, Ammaiyappan; Wong, Jonathan Woon-Chung

    2011-03-01

    The effects of rhamnolipids produced by Pseudomonas aeruginosa ATCC9027 on the cell surface hydrophobicity (CSH) and the biodegradation of phenanthrene by two thermophilic bacteria, Bacillus subtilis BUM and P. aeruginosa P-CG3, and mixed inoculation of these two strains were investigated. Rhamnolipids significantly reduced the CSH of the hydrophobic BUM and resulted in a noticeable lag period in the biodegradation. However, they significantly increased the CSH and enhanced the biodegradation for the hydrophilic P-CG3. In the absence of rhamnolipids, a mixed inoculation of BUM and P-CG3 removed 82.2% of phenanthrene within 30 days and the major contributor of the biodegradation was BUM (rapid degrader) while the growth of P-CG3 (slow degrader) was suppressed. Addition of rhamnolipids promoted the surfactant-mediated-uptake of phenanthrene by P-CG3 but inhibited the uptake through direct contact by BUM. This resulted in the domination of P-CG3 during the initial stage of biodegradation and enhanced the biodegradation to 92.7%.

  11. Effect of nitrogen supplementation on aerobic degradation of linear alkylbenzene sulfonate by consortia of bacteria

    Directory of Open Access Journals (Sweden)

    Kehinde I. Temitope Eniola

    2012-05-01

    Full Text Available Untreated detergent bearing wastes discharged into the environment are sources of linear alkylbenzene sulfonate (LAS. Detergent wastes usually do not contain nitrogen or contain very low amounts. Biostimulation by introducing limiting nutrient element can be useful in biotreatment of such waste. The effect of inorganic and organic nitrogen supplements on aerobic degradation of LAS by LAS-utilizing bacteria was examined. Phosphate-buffered LAS mineral media were prepared and supplemented with different nitrogen sources: NPK fertilizer (inorganic and urea fertilizer (organic. Individual and various consortia of pure cultures of Alcaligenes odorans, Citrobacter diversus, Micrococcus luteus and Pseudomonas putida, previously isolated from a detergent effluent polluted stream, were used. Biodegradation of LAS was monitored in terms of half-life (t½ of the surfactant. The rates of biodegradation by the consortia can be ranked as: 4-membered (t½=8-12 days >3-membered (t½=8-13 days >2-membered consortia (t½=10-15 days >individuals (t½=9-16 days. The inorganic nitrogen source enhanced utilization of the surfactant, while organic nitrogen supplementation generally slowed degradation of the surfactant. In undertaking biotreatment of detergent bearing effluent, inorganic nitrogen should be used as biostimulant.

  12. Combined use of alkane-degrading and plant growth-promoting bacteria enhanced phytoremediation of diesel contaminated soil.

    Science.gov (United States)

    Tara, Nain; Afzal, Muhammad; Ansari, Tariq M; Tahseen, Razia; Iqbal, Samina; Khan, Qaiser M

    2014-01-01

    Inoculation of plants with pollutant-degrading and plant growth-promoting microorganisms is a simple strategy to enhance phytoremediation activity. The objective of this study was to determine the effect of inoculation of different bacterial strains, possessing alkane-degradation and 1-amino-cyclopropane-1 -carboxylic acid (ACC) deaminase activity, on plant growth and phytoremediation activity. Carpet grass (Axonopus affinis) was planted in soil spiked with diesel (1% w/w) for 90 days and inoculated with different bacterial strains, Pseudomonas sp. ITRH25, Pantoea sp. BTRH79 and Burkholderia sp. PsJN, individually and in combination. Generally, bacterial application increased total numbers of culturable hydrocarbon-degrading bacteria in the rhizosphere ofcarpet grass, plant biomass production, hydrocarbon degradation and reduced genotoxicity. Bacterial strains possessing different beneficial traits affect plant growth and phytoremediation activity in different ways. Maximum bacterial population, plant biomass production and hydrocarbon degradation were achieved when carpet grass was inoculated with a consortium of three strains. Enhanced plant biomass production and hydrocarbon degradation were associated with increased numbers of culturable hydrocarbon-degrading bacteria in the rhizosphere of carpet grass. The present study revealed that the combined use of different bacterial strains, exhibiting different beneficial traits, is a highly effective strategy to improve plant growth and phytoremediation activity.

  13. Penicillin V acylases from gram-negative bacteria degrade N-acylhomoserine lactones and attenuate virulence in Pseudomonas aeruginosa

    NARCIS (Netherlands)

    Sunder, Avinash Vellore; Utari, Putri Dwi; Ramasamy, Sureshkumar; van Merkerk, Ronald; Quax, Wim J.; Pundle, Archana

    2016-01-01

    Virulence pathways in gram-negative pathogenic bacteria are regulated by quorum sensing mechanisms, through the production and sensing of N-acylhomoserine lactone (AHL) signal molecules. Enzymatic degradation of AHLs leading to attenuation of virulence (quorum quenching) could pave the way for the d

  14. Paenibacillus tundrae sp. nov. and Paenibacillus xylanexedens sp. nov., Psychrotolerant, Xylan-Degrading, Bacteria from Alaskan Tundra

    Science.gov (United States)

    Psychrotolerant, xylan-degrading, strains of bacteria were isolated from soil beneath moist non-acidic and acidic tundra in northern Alaska. Phylogenetic analysis based on 16S rRNA gene sequences revealed that each strain belonged to the genus Paenibacillus. The highest levels of 16S rRNA gene sim...

  15. INFLUENCE OF ORGANIC NUTRIENTS AND COCULTURES ON THE COMPETITIVE BEHAVIOR OF 1,2-DICHLOROETHANE-DEGRADING BACTERIA

    NARCIS (Netherlands)

    Wijngaard, Arjan J. van den; Kleij, Roelof G. van der; Doornweerd, Rianne E.; Janssen, Dick B.

    1993-01-01

    The effects of organic nutrients and cocultures on substrate removal by and competitive behavior of 1,2-dichloroethane-degrading bacteria were investigated. Xanthobacter autotrophicus GJ10 needed biotin for optimal growth on 1,2-dichloroethane. In continuous culture, dilution of biotin to a concentr

  16. Seasonally chancing preen-wax composition : Red Knots' (Calidris canutus) flexible defense against feather-degrading bacteria?

    NARCIS (Netherlands)

    Reneerkens, Jeroen; Versteegh, Maaike A.; Schneider, Amy M.; Piersma, Theunis; Burtt, Edward H.; James, H.F.

    2008-01-01

    During incubation, ground-breeding sandpipers such as Red Knots (Calidris canutus) create a warm, humid micro-climate in the nest, conditions that favor the growth of feather-degrading bacteria present in their plumage. just before incubation, the composition of waxes secreted by the uropygial gland

  17. Diversity of flavin-binding monooxygenase genes (almA) in marine bacteria capable of degradation long-chain alkanes.

    Science.gov (United States)

    Wang, Wanpeng; Shao, Zongze

    2012-06-01

    Many bacteria have been reported as degraders of long-chain (LC) n-alkanes, but the mechanism is poorly understood. Flavin-binding monooxygenase (AlmA) was recently found to be involved in LC-alkane degradation in bacteria of the Acinetobacter and Alcanivorax genera. However, the diversity of this gene and the role it plays in other bacteria remains unclear. In this study, we surveyed the diversity of almA in marine bacteria and in bacteria found in oil-enrichment communities. To identify the presence of this gene, a pair of degenerate PCR primers were was designed based on conserved motifs of the almA gene sequences in public databases. Using this approach, we identified diverse almA genes in the hydrocarbon-degrading bacteria and in bacterial communities from the surface seawater of the Xiamen coastal area, the South China Sea, the Indian Ocean, and the Atlantic Ocean. As a result, almA was positively detected in 35 isolates belonging to four genera, and a total of 39 different almA sequences were obtained. Five isolates were confirmed to harbor two to three almA genes. From the Xiamen coastal area and the Atlantic Ocean oil-enrichment communities, a total of 60 different almA sequences were obtained. These sequences mainly formed two clusters in the phylogenetic tree, named Class I and Class II, and these shared 45-56% identity at the amino acid level. Class I contained 11 sequences from bacteria represented by the Salinisphaera and Parvibaculum genera. Class II was larger and more diverse, and it was composed of 88 sequences from Proteobacteria, Gram-negative bacteria, and the enriched bacterial communities. These communities were represented by the Alcanivorax and Marinobacter genera, which are the two most popular genera hosting the almA gene. AlmA was also detected across a wide geographical range, as determined by the origin of the bacterial host. Our results demonstrate the diversity of almA and confirm its high rate of occurrence in hydrocarbon-degrading

  18. Cultivation-dependent and cultivation-independent characterisation of hydrocarbon-degrading bacteria in Guaymas Basin sediments

    Directory of Open Access Journals (Sweden)

    Tony eGutierrez

    2015-07-01

    Full Text Available Marine hydrocarbon-degrading bacteria perform a fundamental role in the biodegradation of crude oil and its petrochemical derivatives in coastal and open ocean environments. However, there is a paucity of knowledge on the diversity and function of these organisms in deep-sea sediment. Here we used stable-isotope probing (SIP, a valuable tool to link the phylogeny and function of targeted microbial groups, to investigate polycyclic aromatic hydrocarbon (PAH-degrading bacteria under aerobic conditions in sediments from Guaymas Basin with uniformly labeled [13C]phenanthrene. The dominant sequences in clone libraries constructed from 13C-enriched bacterial DNA (from phenanthrene enrichments were identified to belong to the genus Cycloclasticus. We used quantitative PCR primers targeting the 16S rRNA gene of the SIP-identified Cycloclasticus to determine their abundance in sediment incubations amended with unlabeled phenanthrene and showed substantial increases in gene abundance during the experiments. We also isolated a strain, BG-2, representing the SIP-identified Cycloclasticus sequence (99.9% 16S rRNA gene sequence identity, and used this strain to provide direct evidence of phenanthrene degradation and mineralization. In addition, we isolated Halomonas, Thalassospira and Lutibacterium spp. with demonstrable phenanthrene-degrading capacity from Guaymas Basin sediment. This study demonstrates the value of coupling SIP with cultivation methods to identify and expand on the known diversity of PAH-degrading bacteria in the deep-sea.

  19. Optimisation of Environmental Factors on Oil Degrading Bacteria Isolated from Coastal Water and Sediments in Sri Lanka

    Directory of Open Access Journals (Sweden)

    GY Liyanage

    2015-12-01

    Full Text Available Better understanding of the mechanisms of hydrocarbon degrading microorganisms and effect of some environmental factors is critical for the optimisation of the bioremediation processes. Temperature, pH, nitrate and phosphate are the major factors that influence there mediation process of bacterium. In the present study, optimisations some selected physico-chemical parameters (temperature, pH, nitrate and phosphate were carried out on Bacillus cereus, Enterobacter sp. and Enterobacter ludwigii which were previously isolated as potential oil degraders. The bacteria showed maximum degradation of crude oil at 33o C where the desirable pH was 8.6 for all the isolates except E. ludwigii (pH 5.4. A significant degradation (p < 0.05 of oil was detected by B. cereus (80% to 98%, Enterobacter sp. (73% to 90% and E. ludwigii (70% to 83% respectively with increasing of nitrate concentration from 0.1 to 2.5 ppm. Significant degradation of oil was not detected in the control and when bacteria were enriched with phosphate. Results of this study revealed that the bacterial remediation of oil is governed by nutritional status with special emphasis of nitrate enrichment in the environment. Thus, the results revealed that bacteria could be a useful tool to remove oil from the contaminated environment as eco-friendly, low cost application.

  20. The Use of a Combination of alkB Primers to Better Characterize the Distribution of Alkane-Degrading Bacteria.

    Directory of Open Access Journals (Sweden)

    Diogo Jurelevicius

    Full Text Available The alkane monooxygenase AlkB, which is encoded by the alkB gene, is a key enzyme involved in bacterial alkane degradation. To study the alkB gene within bacterial communities, researchers need to be aware of the variations in alkB nucleotide sequences; a failure to consider the sequence variations results in the low representation of the diversity and richness of alkane-degrading bacteria. To minimize this shortcoming, the use of a combination of three alkB-targeting primers to enhance the detection of the alkB gene in previously isolated alkane-degrading bacteria was proposed. Using this approach, alkB-related PCR products were detected in 79% of the strains tested. Furthermore, the chosen set of primers was used to study alkB richness and diversity in different soils sampled in Carmópolis, Brazil and King George Island, Antarctica. The DNA extracted from the different soils was PCR amplified with each set of alkB-targeting primers, and clone libraries were constructed, sequenced and analyzed. A total of 255 alkB phylotypes were detected. Venn diagram analyses revealed that only low numbers of alkB phylotypes were shared among the different libraries derived from each primer pair. Therefore, the combination of three alkB-targeting primers enhanced the richness of alkB phylotypes detected in the different soils by 45% to 139%, when compared to the use of a single alkB-targeting primer. In addition, a dendrogram analysis and beta diversity comparison of the alkB composition showed that each of the sampling sites studied had a particular set of alkane-degrading bacteria. The use of a combination of alkB primers was an efficient strategy for enhancing the detection of the alkB gene in cultivable bacteria and for better characterizing the distribution of alkane-degrading bacteria in different soil environments.

  1. The Use of a Combination of alkB Primers to Better Characterize the Distribution of Alkane-Degrading Bacteria

    Science.gov (United States)

    Jurelevicius, Diogo; Alvarez, Vanessa Marques; Peixoto, Raquel; Rosado, Alexandre S.; Seldin, Lucy

    2013-01-01

    The alkane monooxygenase AlkB, which is encoded by the alkB gene, is a key enzyme involved in bacterial alkane degradation. To study the alkB gene within bacterial communities, researchers need to be aware of the variations in alkB nucleotide sequences; a failure to consider the sequence variations results in the low representation of the diversity and richness of alkane-degrading bacteria. To minimize this shortcoming, the use of a combination of three alkB-targeting primers to enhance the detection of the alkB gene in previously isolated alkane-degrading bacteria was proposed. Using this approach, alkB-related PCR products were detected in 79% of the strains tested. Furthermore, the chosen set of primers was used to study alkB richness and diversity in different soils sampled in Carmópolis, Brazil and King George Island, Antarctica. The DNA extracted from the different soils was PCR amplified with each set of alkB-targeting primers, and clone libraries were constructed, sequenced and analyzed. A total of 255 alkB phylotypes were detected. Venn diagram analyses revealed that only low numbers of alkB phylotypes were shared among the different libraries derived from each primer pair. Therefore, the combination of three alkB-targeting primers enhanced the richness of alkB phylotypes detected in the different soils by 45% to 139%, when compared to the use of a single alkB-targeting primer. In addition, a dendrogram analysis and beta diversity comparison of the alkB composition showed that each of the sampling sites studied had a particular set of alkane-degrading bacteria. The use of a combination of alkB primers was an efficient strategy for enhancing the detection of the alkB gene in cultivable bacteria and for better characterizing the distribution of alkane-degrading bacteria in different soil environments. PMID:23825163

  2. Dynamics of Phenol Degrading-Iron ReducingBacteria{1mm in Intensive Rice Cropping System

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Field and greenhouse experiments were conducted to investigate theeffects of cropping season, nitrogen fertilizer input and aeratedfallow on the dynamics of phenol degrading-iron reducingbacteria (PD-IRB) in tropical irrigated rice ({ Oryza sativa L.)systems. The PD-IRB population density was monitored at different stagesof rice growth in two cropping seasons (dry and early wet) in acontinuous annual triple rice cropping system under irrigated condition.In this system, the high nitrogen input (195 and 135 kg N ha-1 indry and wet seasons, respectively) plots and control plots receiving noN fertilizer were compared to investigate the effect of nitrogen rate onpopulation size. The phenol degrading-iron reducing bacteria (PD-IRB)were abundant in soils under cropping systems of tropical irrigatedrice. However, density of the bacterial populations varied with ricegrowth stages. Cropping seasons, rhizosphere, and aerated fallow couldaffect the dynamics of PD-IRB. In the field trial, viable counts ofPD-IRB in the topsoil layer (15 cm) ranged between 102 and 108cells per gram of dry soil. A steep increase in viable counts during thesecond half of the cropping season suggested that the population densityof PD-IRB increased at advanced crop-growth stages. Population growth ofPD-IRB was accelerated during the dry season compared to the wet season.In the greenhouse experiment, the adjacent aerated fallow revealed 1-2orders of magnitude higher in most probable number (MPN) of PD-IRB thanthe wet fallow treated plots. As a prominent group of Fe reducingbacteria, PD-IRB predominated in the rhizosphere of rice, since maximumMPN of PD-IRB (2.62108 g-1 soil) was found in rhizospheresoil. Mineral N fertilizer rates showed no significant effect on PD-IRBpopulation density.

  3. Impact of mycelia on the accessibility of fluorene to PAH-degrading bacteria.

    Science.gov (United States)

    Schamfuß, Susan; Neu, Thomas R; van der Meer, Jan Roelof; Tecon, Robin; Harms, Hauke; Wick, Lukas Y

    2013-07-02

    Mycelia have been recently shown to actively transport polycyclic aromatic hydrocarbons (PAH) in water-unsaturated soil over the range of centimeters, thereby efficiently mobilizing hydrophobic PAH beyond their purely diffusive transport in air and water. However, the question if mycelia-based PAH transport has an effect on PAH biodegradation was so far unsolved. To address this, we developed a laboratory model microcosm mimicking air-water interfaces in soil. Chemical analyses demonstrated transport of the PAH fluorene (FLU) by the mycelial oomycete Pythium ultimum that was grown along the air-water interfaces. Furthermore, degradation of mycelia-transported FLU by the bacterium Burkholderia sartisoli RP037-mChe was indicated. Since this organism expresses eGFP in response to a FLU flux to the cell, it was also as a bacterial reporter of FLU bioavailability in the vicinity of mycelia. Confocal laser scanning microscopy (CLSM) and image analyses revealed a significant increase of eGFP expression in the presence of P. ultimum compared to controls without mycelia or FLU. Hence, we could show that physically separated FLU becomes bioavailable to bacteria after transport by mycelia. Experiments with silicon coated glass fibers capturing mycelia-transported FLU guided us to propose a three-step mechanism of passive uptake, active transport and diffusion-driven release. These experiments were also used to evaluate the contributions of these individual steps to the overall mycelial FLU transport rate.

  4. Isolation and characterization of agar-degrading endophytic bacteria from plants.

    Science.gov (United States)

    Song, Tao; Zhang, Weijia; Wei, Congchong; Jiang, Tengfei; Xu, Hui; Cao, Yi; Cao, Yu; Qiao, Dairong

    2015-02-01

    Agar is a polysaccharide extracted from the cell walls of some macro-algaes. Among the reported agarases, most of them come from marine environment. In order to better understand different sources of agarases, it is important to search new non-marine native ones. In this study, seven agar-degrading bacteria were first isolated from the tissues of plants, belonging to three genera, i.e., Paenibacillus sp., Pseudomonas sp., and Klebsiella sp. Among them, the genus Klebsiella was first reported to have agarolytic ability and the genus Pseudomonas was first isolated from non-marine environment with agarase activity. Besides, seven strains were characterized by investigating the growth and agarase production in the presence of various polysaccharides. The results showed that they could grow on several polysaccharides such as araban, carrageenan, chitin, starch, and xylan. Besides, they could also produce agarase in the presence of different polysaccharides other than agar. Extracellular agarases from seven strains were further analyzed by SDS-PAGE combined with activity staining and estimated to be 75 kDa which has great difference from most reported agarases.

  5. Distribution of alkB genes within n-alkane-degrading bacteria.

    Science.gov (United States)

    Vomberg, A; Klinner, U

    2000-08-01

    Fifty-four bacterial strains belonging to 37 species were tested for their ability to assimilate short chain and/or medium chain liquid n-alkanes. A gene probe derived from the alkB gene of Pseudomonas oleovorans ATCC 29347 was utilized in hybridization experiments. Results of Southern hybridization of PCR-amplificates were compared with those of colony hybridization and dot blot hybridization. Strongest signals were received only from Gram-negative bacteria growing solely with short n-alkanes (C10). Hybridization results with soil isolates growing with n-alkanes of different chain lengths suggested as well that alkB genes seem to be widespread only in solely short-chain n-alkane-degrading pseudomonads. PCR products of Rhodococcus sp., Nocardioides sp., Gordona sp. and Sphingomonas sp. growing additionally or solely with medium-chain n-alkane as hexadecane had only few sequence identity with alkB though hybridizing with the gene probe. The derived amino acid sequence of the alkB-amplificate of Pseudomonas aureofaciens showed high homology (95%) with AlkB from Ps. oleovorans. alkB gene disruptants were not able to grow with decane.

  6. Immobilization of degradative bacteria in polyurethane-based foams: embedding efficiency and effect on bacterial activity

    Energy Technology Data Exchange (ETDEWEB)

    Wilde, E.W. [Westinghouse Savannah River Company, Aiken, SC (United States); Radway, J.C.; Hazen, T.C.; Hermann, P. [Matrix R and D Corp., Dover, NH (United States)

    1996-09-03

    The immobilization of TCE-degrading bacterium Burkholderia cepacia was evaluated using hydrophilic polyurethane foam. The influence of several foam formulation parameters upon cell retention was examined. Surfactant type was a major determinant of retention, with a lecithin- based compound retaining more cells than pluronic or silicone based surfactants. Excessive amounts of surfactant led to increased washout of bacteria. Increasing the biomass concentration from 4.8% to 10.5% caused fewer cells to be washed out. Embedding at reduced temperature did not significantly affect retention, while the use of a silane binding agent gave inconsistent results. The optimal formulation retained all but 0.2% of total embedded cells during passage of 2 liters of water through columns containing 2 g of foam. All foam formulations tested reduced the culturability of embedded cells by several orders of magnitude. However, O{sub 2} and CO{sub 2} evolution rates of embedded cells were never less than 50% of unembedded cells. Nutrient amendments stimulated an increase in cell volume and ribosomal activity as indicated by hybridization studies using fluorescently labeled ribosomal probes. these results indicated that, although immobilized cells were nonculturable, they were metabolically active and thus could be used for biodegradation of toxic compounds.

  7. Case study of the relationship between fungi and bacteria associated with high-molecular-weight polycyclic aromatic hydrocarbon degradation.

    Science.gov (United States)

    Wang, Shuozhi; Nomura, Nobuhiko; Nakajima, Toshiaki; Uchiyama, Hiroo

    2012-05-01

    Although bacteria play dominant roles in microbial bioremediation, few of them have been reported that were capable of utilizing high-molecular-weight (HMW) organic pollutants as their sole sources of carbon and energy. However, many soil fungi can metabolize those of pollutants, although they rarely complete mineralization. In this paper, we investigated the dynamic relationship between fungi and bacteria associated with degradation of HMW-polycyclic aromatic hydrocarbons (PAHs). Artificial fungal-bacterial mixed cultures were constructed to simulate the environment of actual polluted sites. Four bacterial strains and seven fungal strains were isolated that related to the removal of phenanthrene, fluoranthene and pyrene in the soil. Furthermore, these strains were used to create mixed culture of bacteria (Bact-mix), mixed culture of fungi (Fung-mix), fungal-bacterial co-cultures (Fung-Bact), respectively. The maximal pyrene removal rate (67%, 28days) was observed in the Fung-Bact, compared with cultures of Fung-mix (39%) and Bact-mix (56%). The same tendency was also indicated in the degradation of phenanthrene and fluoranthene. In addition, a dynamic relationship during the degradation process between fungi and bacteria was monitored through using polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) method.

  8. Succession of hydrocarbon-degrading bacteria in the aftermath of the deepwater horizon oil spill in the gulf of Mexico.

    Science.gov (United States)

    Dubinsky, Eric A; Conrad, Mark E; Chakraborty, Romy; Bill, Markus; Borglin, Sharon E; Hollibaugh, James T; Mason, Olivia U; M Piceno, Yvette; Reid, Francine C; Stringfellow, William T; Tom, Lauren M; Hazen, Terry C; Andersen, Gary L

    2013-10-01

    The Deepwater Horizon oil spill produced large subsurface plumes of dispersed oil and gas in the Gulf of Mexico that stimulated growth of psychrophilic, hydrocarbon degrading bacteria. We tracked succession of plume bacteria before, during and after the 83-day spill to determine the microbial response and biodegradation potential throughout the incident. Dominant bacteria shifted substantially over time and were dependent on relative quantities of different hydrocarbon fractions. Unmitigated flow from the wellhead early in the spill resulted in the highest proportions of n-alkanes and cycloalkanes at depth and corresponded with dominance by Oceanospirillaceae and Pseudomonas. Once partial capture of oil and gas began 43 days into the spill, petroleum hydrocarbons decreased, the fraction of aromatic hydrocarbons increased, and Colwellia, Cycloclasticus, and Pseudoalteromonas increased in dominance. Enrichment of Methylomonas coincided with positive shifts in the δ(13)C values of methane in the plume and indicated significant methane oxidation occurred earlier than previously reported. Anomalous oxygen depressions persisted at plume depths for over six weeks after well shut-in and were likely caused by common marine heterotrophs associated with degradation of high-molecular-weight organic matter, including Methylophaga. Multiple hydrocarbon-degrading bacteria operated simultaneously throughout the spill, but their relative importance was controlled by changes in hydrocarbon supply.

  9. Screening of SDS-degrading Bacteria from Carwash Wastewater and the Study of the Alkylsulfatase Enzyme Activity

    Directory of Open Access Journals (Sweden)

    Razieh Shahbazi

    2013-06-01

    Full Text Available Background and Objectives: Sodium dodecyl sulfate (SDS is one of the main surfactant components in detergents and cosmetics, used in high amounts as a detergent in products such as shampoos, car wash soap and toothpaste. Therefore, its bioremediation by suitable microorganisms is important. Alkylsulfatase is an enzyme that hydrolyses sulfate -ester bonds to give inorganic sulfate and alcohol. The purpose of this study was to isolate SDS–degrading bacteria from Tehran city car wash wastewater, study bacterial alkylsulfatase enzyme activity and identify the alkylsulfatase enzyme coding gene.Materials and Methods: Screening of SDS-degrading bacteria was carried out on basal salt medium containing SDS as the sole source of carbon. Amount of SDS degraded was assayed by methylene blue active substance (MBAS.Results and Conclusion: Identification of the sdsA gene was carried by PCR and subsequent sequencing of the 16S rDNA gene and biochemical tests identified Pseudomonas aeruginosa. This bacterium is able to degrade 84% of SDS after four days incubation. Bacteria isolated from car wash wastewater were shown to carry the sdsA gene (670bp and the alkylsulfatase enzyme specific activity expressed from this gene was determined to be 24.3 unit/mg . The results presented in this research indicate that Pseudomonas aeruginosa is a suitable candidate for SDS biodegradation.

  10. Isolation and Identification of Pyrene-degrading Bacteria from Soils around Landfills in Shiraz and Their Growth Kinetic Assay

    Directory of Open Access Journals (Sweden)

    Farshid Kafilzadeh

    2011-12-01

    Full Text Available Background & Objectives: Pyrene is a kind of carcinogen hydrocarbon in environment and one of the top 129 pollutants as ranked by the U.S.Environmental Pretection Agency (USEPA. Today's commodious method that is considered by many researchers is the use of microorganisms to degrade these compounds from the environment. The goal of this research is separation and identification of the indigenous bacterias which are effective in decomposition of Pyrene hydrocarbon from soils around Shiraz Landfills. Isolated bacteria growth in the presence of different concentrations of the aforesaid organic pollutant was evaluated. Materials & Methods: Taking samples from Landfills were done after transportation them to the laboratory. The numbers of the bacterias were counted in a medium including Pyrene 0.6 g/l and in another medium without Pyrene. The isolated bacterias were separated by the enriched medium of hydrocarbon Pyrene and were recognized accordance with standards methods (specialty of colony, microscopic properties, fermentation of sugars and biochemical test.The kinetic growth of the separated bacterias was evaluated every 12 hours during 7 successive days. Results: It was reported that the numbers of the bacterias in the medium without Pyrene is more than those with Pyrene (cfu/g. The separated bacterias were included Bacillus spp., Pseudomonas spp., Micrococcus spp., Mycobacterium spp. These four isolated bacterias showed the best growth with Pyrene 0.6 g/l during third and fourth days. Conclusion: The separating bacterias, effecting in decomposition of PAH, make this possibility that the modern methods with more efficiency to be created for removing the carcinogen organic polluters from the environment. Moreover, the separated bacterias (relating to this research can be applied to develop the microbial population in the areas that polluted with Pyrene.

  11. A simple strategy for investigating the diversity and hydrocarbon degradation abilities of cultivable bacteria from contaminated soil.

    Science.gov (United States)

    Bučková, Maria; Puškarová, Andrea; Chovanová, Katarína; Kraková, Lucia; Ferianc, Peter; Pangallo, Domenico

    2013-06-01

    The use of indigenous bacterial strains is a valuable bioremediation strategy for cleaning the environment from hydrocarbon pollutants. The isolation and selection of hydrocarbon-degrading bacteria is therefore crucial for obtaining the most promising strains for site decontamination. Two different media, a minimal medium supplemented with a mixture of polycyclic aromatic hydrocarbons and a MS medium supplemented with triphenyltetrazolium chloride, were used for the isolation of bacterial strains from two hydrocarbon contaminated soils and from their enrichment phases. The hydrocarbon degradation abilities of these bacterial isolates were easily and rapidly assessed using the 2,6-dichlorophenol indophenol assay. The diversity of the bacterial communities isolated from these two soil samples and from their enrichment phases was evaluated by the combination of a bacterial clustering method, fluorescence ITS-PCR, and bacterial identification by 16S rRNA sequencing. Different PCR-based assays were performed in order to detect the genes responsible for hydrocarbon degradation. The best hydrocarbon-degrading bacteria, including Arthrobacter sp., Enterobacter sp., Sphingomonas sp., Pseudomonas koreensis, Pseudomonas putida and Pseudomonas plecoglossicida, were isolated directly from the soil samples on minimal medium. The nahAc gene was detected only in 13 Gram-negative isolates and the sequences of nahAc-like genes were obtained from Enterobacter, Stenotrophomonas, Pseudomonas brenneri, Pseudomonas entomophila and P. koreensis strains. The combination of isolation on minimal medium with the 2,6-dichlorophenol indophenol assay was effective in selecting different hydrocarbon-degrading strains from 353 isolates.

  12. Isolation of oxamyl-degrading bacteria and identification of cehA as a novel oxamyl hydrolase gene

    Directory of Open Access Journals (Sweden)

    Konstantina eRousidou

    2016-04-01

    Full Text Available Microbial degradation is the main process controlling the environmental dissipation of the nematicide oxamyl. Despite that, little is known regarding the microorganisms involved in its biotransformation. We report the isolation of four oxamyl-degrading bacterial strains from an agricultural soil exhibiting enhanced biodegradation of oxamyl. Multilocus sequence analysis (MLSA assigned the isolated bacteria to different subgroups of the genus Pseudomonas. The isolated bacteria hydrolyzed oxamyl to oxamyl oxime, which was not further transformed, and utilized methylamine as a C and N source. This was further supported by the detection of methylamine dehydrogenase in three of the four isolates. All oxamyl-degrading strains carried a gene highly homologous to a carbamate-hydrolase gene cehA previously identified in carbaryl- and carbofuran-degrading strains. Transcription analysis verified its direct involvement in the hydrolysis of oxamyl. Selected isolates exhibited relaxed degrading specificity and transformed all carbamates tested including the oximino carbamates aldicarb and methomyl (structurally related to oxamyl and the aryl-methyl carbamates carbofuran and carbaryl which share with oxamyl only the carbamate moiety

  13. Identification of a novel enzymatic activity from lactic acid bacteria able to degrade biogenic amines in wine.

    Science.gov (United States)

    Callejón, S; Sendra, R; Ferrer, S; Pardo, I

    2014-01-01

    The main objectives of this study were the search for enzymatic activities responsible for biogenic amine (BA) degradation in lactic acid bacteria (LAB) strains isolated from wine, their identification, and the evaluation of their applicability for reducing BAs in wine. Fifty-three percent of the 76 LAB cell extracts showed activity against a mixture of histamine, tyramine, and putrescine when analyzed in-gel. The quantification of the degrading ability for each individual amine was tested in a synthetic medium and wine. Most of the bacteria analyzed were able to degrade the three amines in both conditions. The highest percentages of degradation in wine were those of putrescine: up to 41% diminution in 1 week. Enzymes responsible for amine degradation were isolated and purified from Lactobacillus plantarum J16 and Pediococcus acidilactici CECT 5930 strains and were identified as multicopper oxidases. This is the first report of an efficient BA reduction in wine by LAB. Furthermore, the identity of the enzymes involved has been revealed.

  14. Isolation of Oxamyl-degrading Bacteria and Identification of cehA as a Novel Oxamyl Hydrolase Gene

    Science.gov (United States)

    Rousidou, Konstantina; Chanika, Eleni; Georgiadou, Dafne; Soueref, Eftychia; Katsarou, Demetra; Kolovos, Panagiotis; Ntougias, Spyridon; Tourna, Maria; Tzortzakakis, Emmanuel A.; Karpouzas, Dimitrios G.

    2016-01-01

    Microbial degradation is the main process controlling the environmental dissipation of the nematicide oxamyl. Despite that, little is known regarding the microorganisms involved in its biotransformation. We report the isolation of four oxamyl-degrading bacterial strains from an agricultural soil exhibiting enhanced biodegradation of oxamyl. Multilocus sequence analysis (MLSA) assigned the isolated bacteria to different subgroups of the genus Pseudomonas. The isolated bacteria hydrolyzed oxamyl to oxamyl oxime, which was not further transformed, and utilized methylamine as a C and N source. This was further supported by the detection of methylamine dehydrogenase in three of the four isolates. All oxamyl-degrading strains carried a gene highly homologous to a carbamate-hydrolase gene cehA previously identified in carbaryl- and carbofuran-degrading strains. Transcription analysis verified its direct involvement in the hydrolysis of oxamyl. Selected isolates exhibited relaxed degrading specificity and transformed all carbamates tested including the oximino carbamates aldicarb and methomyl (structurally related to oxamyl) and the aryl-methyl carbamates carbofuran and carbaryl which share with oxamyl only the carbamate moiety. PMID:27199945

  15. The development of geotextiles incorporating slow-release phosphate beads for the maintenance of oil degrading bacteria in permeable pavements.

    Science.gov (United States)

    Spicer, G E; Lynch, D E; Coupe, S J

    2006-01-01

    The development of a self-fertilising geotextile mat designed to provide a sustained slow-release of required inorganic nutrients for the growth of oil degrading microorganisms in porous pavement systems (PPS) is reported. The system comprises a geotextile spun from polymer fibres containing spherical phosphated polymer beads that release phosphate upon contact with water at a desirable level for microbial growth. Initial results using model PPS have shown that the self-fertilising geotextile system works extremely effectively as increased microbial activity has been observed throughout the experiment, illustrating that the oil-degrading bacteria can effectively utilise this polymer composite as a suitable nutrient source.

  16. Alkane-degrading bacteria at the soil-litter interface: comparing isolates with T-RFLP-based community profiles.

    Science.gov (United States)

    Giebler, Julia; Wick, Lukas Y; Chatzinotas, Antonis; Harms, Hauke

    2013-10-01

    Alkane-degrading bacteria were isolated from uncontaminated soil microcosms, which had been incubated with maize litter as natural alkane source. The isolates served to understand spatio-temporal community changes at the soil-litter interface, which had been detected using alkB as a functional marker gene for bacterial alkane degraders. To obtain a large spectrum of isolates, liquid subcultivation was combined with a matrix-assisted enrichment (Teflon membranes, litter). Elevated cell numbers of alkane degraders were detected by most probable number counting indicating enhanced alkane degradation potential in soil in response to litter treatment. Partial 16S rRNA gene sequencing of 395 isolates revealed forty different phylogenetic groups [operational taxonomic units (OTUs)] and spatio-temporal shifts in community composition. Ten OTUs comprised so far unknown alkane degraders, and five OTUs represented putative new bacterial genera. The combination of enrichment methods yielded a higher diversity of isolates than liquid subcultivation alone. Comparison of 16S rRNA gene T-RFLP profiles indicated that many alkane degraders present in the enrichments were not detectable in the DNA extracts from soil microcosms. These possibly rare specialists might represent a seed bank for the alkane degradation capacity in uncontaminated soil. This relevant ecosystem function can be fostered by the formation of the soil-litter interface.

  17. Inhibition of ethanol-producing yeast and bacteria by degradation products produced during pre-treatment of biomass

    DEFF Research Database (Denmark)

    Klinke, H.B.; Thomsen, A.B.; Ahring, Birgitte Kiær

    2004-01-01

    An overview of the different inhibitors formed by pre-treatment of lignocellulosic materials and their inhibition of ethanol production in yeast and bacteria is given. Different high temperature physical pre-treatment methods are available to render the carbohydrates in lignocellulose accessible...... for ethanol fermentation. The resulting hydrolyzsates contain substances inhibitory to fermentation-depending on both the raw material (biomass) and the pre-treatment applied. An overview of the inhibitory effect on ethanol production by yeast and bacteria is presented. Apart from furans formed by sugar...... degradation, phenol monomers from lignin degradation are important co-factors in hydrolysate inhibition, and inhibitory effects of these aromatic compounds on different ethanol producing microorganisms is reviewed. The furans and phenols generally inhibited growth and ethanol production rate (Q...

  18. Pesticide Degrading Bacteria in Aquatic Environment: Bioprospecting and Evaluation of Biotechnological Potential

    Directory of Open Access Journals (Sweden)

    Daniel Rodrigues dos Santos

    2016-07-01

    Full Text Available Pesticides play an important role in the increase of productivity in agro-industry and the extensive use of these substances cause environmental, economic and social damage in time. Microbial activity is an essential part in the dynamics and the destination of pesticides in the environment. This research focuses in prospecting and characterizing bacterial strains which are potentially able to degrade/tolerate Atrazine, Chlorpyrifos, Methyl parathion and Picloram. Bacteria were isolated from water samples collected according to the degree of salinity along the Pacoti River's estuary (Ceara, located in the semi-arid region of northeastern Brazil. A total of 49 bacterial strains were isolated, all of which tolerated/ downgraded concentrations up to 200mg/L of picloram, atrazine and methyl parathion. Tested in pesticide mixtures, the percentage and tolerance level showed that 73% grew in concentrations up to 200mg/L, 17,4% tolerated/ downgraded up to 150ml/L and the remainder only grew in concentrations under 100ml/L. The strains which had the best performance against pesticides, by points, were P1 (13Db e 14D; P2 (10E; P3 (2M, 9M, 10M, 12Mb, 14M, 17M 18Mp 19M e 20M. A high percentage of isolates (67% expressed luminescence when exposed to the pesticides atrazine and methyl parathion in concentrations between 150 and 200ml/L. DOI: http://dx.doi.org/10.17807/orbital.v8i4.748

  19. Rhizobium borbori sp. nov., aniline-degrading bacteria isolated from activated sludge.

    Science.gov (United States)

    Zhang, Guo Xia; Ren, Sui Zhou; Xu, Mei Ying; Zeng, Guo Qu; Luo, Hui Dong; Chen, Jin Lin; Tan, Zhi Yuan; Sun, Guo Ping

    2011-04-01

    Three aniline-degrading bacteria, strains DN316(T), DN316-1 and DN365, were isolated from activated sludge. According to 16S rRNA gene sequence-based phylogenetic analysis, the isolates belonged to the genus Rhizobium, with Rhizobium ( = Agrobacterium) radiobacter LMG 140(T) as the closest relative, with 96.5 % sequence similarity. Phylogenetic analysis of the representative strain DN316(T) using sequences of the glnA, thrC and recA genes and the 16S-23S intergenic spacer region confirmed the phylogenetic arrangement obtained from analysis of the 16S rRNA gene. DNA-DNA relatedness between DN316(T) and R. radiobacter LMG 140(T) was 43.7 %, clearly indicating that the representative strain DN316(T) represents a novel species. Phenotypic and biochemical characterization of the isolates and insertion sequence-PCR fingerprinting patterns showed several distinctive features that differentiated them from closely related species. The major components of the cellular fatty acids were C(18 : 1)ω7c (57.10 %), C(16 : 0) (11.31 %) and C(19 : 0) cyclo ω8c (10.13 %). Based on our taxonomic analysis, the three isolates from activated sludge represent a novel species of the genus Rhizobium, for which the name Rhizobium borbori sp. nov. is proposed. The type strain is DN316(T) ( = CICC 10378(T)  = LMG 23925(T)).

  20. Screening and identification of newly isolated cellulose-degrading bacteria from the gut of xylophagous termite Microcerotermes diversus (Silvestri).

    Science.gov (United States)

    Pourramezan, Z; Ghezelbash, G R; Romani, B; Ziaei, S; Hedayatkhah, A

    2012-01-01

    The aim of the present study was to isolate and characterize the cellulose-degrading bacteria from the gut of the local termite, Microcerotermes diversus (Silvestri), inhabiting the Khuzestan province of Iran. The microorganisms capable of growing in the liquid medium containing cellulose as the only source of carbon were isolated and their cellulolytic activity on CMC-containing media was confirmed by the congo red clearing zone assay. The isolates were identified based on biochemical characteristics and the phylogenetic analysis of 16S rRNA gene fragments. The results of the present study show that three cellulose-degrading bacteria isolated from local termite guts belonged to the genera Acinetobacter, Pseudomonas and Staphylococcus and four cellulose-degrading bacteria belonged to Enterobacteriaceae and Bacillaceae families. Several isolates recovered from separate termite Microcerotermes diversus samples closely clustered in phylogenetic trees indicating high similarity and the abundance of particular cellulolytic strains. Bacillus B5B and Acinetobacter L9B hydrolyzed cellulose faster than the other isolates (with CMCase activity of 1.47 U/mL and 1.22 U/mL, respectively). The stability of CMCase produced by Bacillus B5B over a broad range of pH and high temperature indicated that the enzyme may be of great commercial value.

  1. Isolation and Identification of Crude Oil Degrading and Biosurfactant Producing Bacteria from the Oil-Contaminated Soils of Gachsaran

    Directory of Open Access Journals (Sweden)

    Seyyedeh Zahra Hashemi

    2016-03-01

    Full Text Available Background and Objectives: Petroleum hydrocarbons are harmful to the environment, human health, and all other living creatures. Oil and its byproducts in contact with water block sunshine to phytoplanktons and thus break the food chain and damage the marine food source. This study aims to isolate the crude oil degrading and biosurfactant producing bacteria from the oil contaminated soils of Gachsaran, Iran. Materials and Methods: Isolation was performed in peptone-water medium with yeast extract. Oil displacement area, emulsification index and bacterial phylogeny using 16S rRNA analysis were studied. Results and Conclusion: Three isolates were able to degrade the crude oil. In the first day, there were two phases in the medium; after a few days, these three bacteria degraded the crude oil until there was only one phase left in the medium. One strain was selected as a superior strain by homogenizing until the medium became clear and transparent. This method confirmed that the strain produces biosurfactant. According to the morphological and biochemical tests, the strain isolated from the oil contaminated soils is a member of Bacillus subtilis, so to study the bacterial phylogeny and taxonomy of the strain, an analysis of 16S rRNA was carried out, and the phylogenic tree confirmed them. The results verified that oil contaminated soils are good source for isolation of the biosurfactant producing bacteria.

  2. Self-bioremediation of cork-processing wastewaters by (chloro)phenol-degrading bacteria immobilised onto residual cork particles.

    Science.gov (United States)

    del Castillo, I; Hernández, P; Lafuente, A; Rodríguez-Llorente, I D; Caviedes, M A; Pajuelo, E

    2012-04-15

    Cork manufacturing is a traditional industry in Southern Europe, being the main application of this natural product in wine stoppers and insulation. Cork processing begins at boiling the raw material. As a consequence, great volumes of dark wastewaters, with elevated concentrations of chlorophenols, are generated, which must be depurated through costly physicochemical procedures before discarding them into public water courses. This work explores the potential of bacteria, isolated from cork-boiling waters storage ponds, in bioremediation of the same effluent. The bacterial population present in cork-processing wastewaters was analysed by DGGE; low bacterial biodiversity was found. Aerobic bacteria were isolated and investigated for their tolerance against phenol and two chlorophenols. The most tolerant strains were identified by sequencing 16S rDNA. The phenol-degrading capacity was investigated by determining enzyme activities of the phenol-degrading pathway. Moreover, the capacity to form biofilms was analysed in a microtitre plate assay. Finally, the capacity to form biofilms onto the surface of residual small cork particles was evaluated by acridine staining followed by epifluorescence microscopy and by SEM. A low-cost bioremediation system, using phenol-degrading bacteria immobilised onto residual cork particles (a by-product of the industry) is proposed for the remediation of this industrial effluent (self-bioremediation).

  3. A PRELIMINARY STUDY AND FIRST REPORT ON CAFFEINE DEGRADING BACTERIA ISOLATED FROM THE SOILS OF CHITTOOR AND VELLORE

    Directory of Open Access Journals (Sweden)

    Sharan Siddharth

    2012-03-01

    Full Text Available An attempt on basic study of the caffeine degrading organism and screening of potential ‘caffeinase’ producing bacteria has been studied and reported. Caffeine is present in soft drinks, coffee plants, tea leaves, and kola nuts and is used extensively in human consumption. Various health and environmental demerits makes it significant to reduce the levels of caffeine into a much less harmful compound, which can be done biologically using specific microorganisms. The enzyme responsible for caffeine degradation plays a major role and hence needs to be studied for caffeinase isolation and improvement of available caffeine products. Isolation of such microorganisms and their study of extent of caffeine degradation would prove to be helpful in generating an economic and safer method of caffeine removal in food products and coffee left over which could be less harmful to human health and the environment.

  4. Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps.

    Science.gov (United States)

    Kleindienst, Sara; Herbst, Florian-Alexander; Stagars, Marion; von Netzer, Frederick; von Bergen, Martin; Seifert, Jana; Peplies, Jörg; Amann, Rudolf; Musat, Florin; Lueders, Tillmann; Knittel, Katrin

    2014-10-01

    Biogeochemical and microbiological data indicate that the anaerobic oxidation of non-methane hydrocarbons by sulfate-reducing bacteria (SRB) has an important role in carbon and sulfur cycling at marine seeps. Yet, little is known about the bacterial hydrocarbon degraders active in situ. Here, we provide the link between previous biogeochemical measurements and the cultivation of degraders by direct identification of SRB responsible for butane and dodecane degradation in complex on-site microbiota. Two contrasting seep sediments from Mediterranean Amon mud volcano and Guaymas Basin (Gulf of California) were incubated with (13)C-labeled butane or dodecane under sulfate-reducing conditions and analyzed via complementary stable isotope probing (SIP) techniques. Using DNA- and rRNA-SIP, we identified four specialized clades of alkane oxidizers within Desulfobacteraceae to be distinctively active in oxidation of short- and long-chain alkanes. All clades belong to the Desulfosarcina/Desulfococcus (DSS) clade, substantiating the crucial role of these bacteria in anaerobic hydrocarbon degradation at marine seeps. The identification of key enzymes of anaerobic alkane degradation, subsequent β-oxidation and the reverse Wood-Ljungdahl pathway for complete substrate oxidation by protein-SIP further corroborated the importance of the DSS clade and indicated that biochemical pathways, analog to those discovered in the laboratory, are of great relevance for natural settings. The high diversity within identified subclades together with their capability to initiate alkane degradation and growth within days to weeks after substrate amendment suggest an overlooked potential of marine benthic microbiota to react to natural changes in seepage, as well as to massive hydrocarbon input, for example, as encountered during anthropogenic oil spills.

  5. Culture-based Identification Of Microcystin-Degrading Bacteria In the Sandusky Bay and Maumee Bay of Lake Erie

    Science.gov (United States)

    Ormiston, A.; Mou, X.

    2012-12-01

    Harmful cyanobacteria blooms (cyanoHABs) are a serious issue that affects wildlife, human health, recreation and local economics worldwide. CyanoHABs produce cyanotoxins, such as microcystins (MCs) that lead to skin irritation, illness and liver tumors. Bacterially mediated degradation of MCs plays a key role to transform these toxic substrates to less harmful metabolites in natural environments. However, only a few Sphingomonos species have been isolated for degradation of MCs and many of which are from other habitats such as water plants. This project aims to isolate and identify bacteria that can degrade MC-LR and MC-RR, two major forms of MCs found during cyanoHABs in Lake Erie. Water samples were collected from the surface of Sandusky Bay and Maumee Bay of Lake Erie and immediately filtered through 3.0 -μm-pore-size membrane filters to obtain bacterioplankton fraction. The filtrates were amended with excessive inorganic nitrogen and phosphorus compounds and incubated in the dark for a week to purposely establish a carbon-limited condition. Afterwards, enrichment microcosms were established in flasks filled with pre-incubated bacterioplankton and single MC compounds (final concentration 10 μM). Once cell growth was confirmed by flow cytometry-based cell counting, bacterial cells in enriched microcosms were transferred onto solid surfaces, i.e., GFF filter and noble agar for colony isolation. Obtained single colonies were inoculated in defined liquid media with MCs as single carbon source. DNA was extracted from each purified isolate and analyzed by restriction fragment length polymorphism analysis (RFLP). A total of 18 different RFLP banding patterns were found, indicating MC-degrading bacteria may be heterogeneous in studied water samples. 16S rRNA genes of selected bacterial isolates were PCR amplified and sequenced for taxonomic identification. Our results demonstrated that MCs can be degraded by multiple bacterial species in Lake Erie. Future directions

  6. [Purification and properties of two chloridazondihydrodiol dehydrogenases from chloridazon degrading bacteria].

    Science.gov (United States)

    Eberspächer, J; Lingens, F

    1978-10-01

    A cell-free extract of Chloridazon-degrading soil bacteria catalyzes the conversion of the dihydrodiol derivative of chloridazon to the corresponding catechol derivative. NAD is required as hydrogen acceptor. Chromatography of the crude extract on DEAE-cellulose results in the elution of two different enzymes (enzyme A and enzyme B, respectively) with the same catalytic capacity. Both enzymes were purified to homogeneity in disc-gel electrophoresis and their properties were compared. The molecular weight was found to be 220 000 for both enzymes. Dodecyl sulphate polyacrylamide gel electrophoresis indicated subunits of molecular weight 50 000 in both cases. The synthesis of the enzymes does not seem to be under inductive control. The two dehydrogenases differ in heat-stability, pH-optimum, Km-values for the substrate and in their sensitivity to inhibitors. Enzyme A shows relatively high heat lability, a pH-optimum at pH 9.5, and a Km-value of 0.25 mM for the dihydrodiol derivative of chloridazon. The catalytic activity of enzyme A is not influenced by p-chloromercuribenzoate or by N-bromosuccinimide. In contrast enzyme B is relatively stable at high temperatures, showing a pH-optimum of 7.0, and a Km for the dihydrodiol derivative of chloridazon of 1.0 mM. Enzyme B can be completely inhibited by even small amounts of p-chloromercuribenzoate and by N-bromosuccinimide. Striking differences were found in the substrate specificities of the two dehydrogenases. Whereas enzyme A exhibits a high specificity towards dihydrodiols derived from aromates of the chloridazon or phenazon type, enzyme B is much less specific and is also able to convert the dihydrodiols of benzene, toluene or chlorobenzene into the corresponding catechols. Both enzymes are competitively inhibited by the reaction product, the catechol of chloridazon. Other catechols differed in their inhibitory effect on the two dehydrogenases. These differences are correlated with the different substrate

  7. Temporal metagenomic and metabolomic characterisation of fresh perennial ryegrass degradation by rumen bacteria

    Directory of Open Access Journals (Sweden)

    Olga Mayorga

    2016-11-01

    Full Text Available Understanding the relationship between ingested plant material and the attached microbiome is essential for developing methodologies to improve ruminant nutrient use efficiency. We have previously shown that perennial ryegrass (PRG rumen bacterial colonisation events follow a primary (up to 4 h and secondary (after 4 h pattern based on the differences in diversity of the attached bacteria. In this study we investigated temporal niche specialisation of primary and secondary populations of attached rumen microbiota using metagenomic shotgun sequencing as well as monitoring changes in the plant chemistry using mid-infrared spectroscopy (FT-IR. Metagenomic Rapid Annotation using Subsystem Technology (MG-RAST taxonomical analysis of shotgun metagenomic sequences showed that the genera Butyrivibrio, Clostridium, Eubacterium, Prevotella and Selenomonas dominated the attached microbiome irrespective of time. MG-RAST also showed that Acidaminococcus, Bacillus, Butyrivibrio and Prevotella rDNA increased in read abundance during secondary colonisation, whilst Blautia decreased in read abundance. MG-RAST Clusters of Orthologous Groups (COG functional analysis also showed that the primary function of the attached microbiome was categorised broadly within ‘metabolism’; predominantly amino acid, carbohydrate, and lipid metabolism and transport. Most sequence read abundances (51.6, 43.8, and 50.0% of COG families pertaining to amino acid, carbohydrate and lipid metabolism, respectively within these categories were higher in abundance during secondary colonisation. Kyoto encyclopedia of genes and genomes (KEGG pathways analysis confirmed that the PRG- attached microbiota present at 1 and 4 h of rumen incubation possess a similar functional capacity, with only a few pathways being uniquely found in only one incubation time point only. FT-IR data for the plant residues also showed that the main changes in plant chemistry between primary and secondary

  8. Simazine degradation in bioaugmented soil: urea impact and response of ammonia-oxidizing bacteria and other soil bacterial communities.

    Science.gov (United States)

    Guo, Qingwei; Wan, Rui; Xie, Shuguang

    2014-01-01

    The objective of this study was to investigate the impact of exogenous urea nitrogen on ammonia-oxidizing bacteria (AOB) and other soil bacterial communities in soil bioaugmented for simazine remediation. The previously isolated simazine-degrading Arthrobacter sp. strain SD1 was used to degrade the herbicide. The effect of urea on the simazine degradation capacity of the soil bioaugmented with Arthrobacter strain SD1 was assessed using quantitative PCR targeting the s-triazine-degrading trzN and atzC genes. Structures of bacterial and AOB communities were characterized using terminal restriction fragment length polymorphism. Urea fertilizer could affect simazine biodegradation and decreased the proportion of its trzN and atzC genes in soil augmented with Arthrobacter strain SD1. Bioaugmentation process could significantly alter the structures of both bacterial and AOB communities, which were strongly affected by urea amendment, depending on the dosage. This study could provide some new insights towards s-triazine bioremediation and microbial ecology in a bioaugmented system. However, further studies are necessary in order to elucidate the impact of different types and levels of nitrogen sources on s-triazine-degraders and bacterial and AOB communities in bioaugmented soil.

  9. Isolation and characterization of resin acid degrading bacteria found in effluent from a bleached kraft pulp mill.

    Science.gov (United States)

    Morgan, C A; Wyndham, R C

    1996-05-01

    Thirteen resin acid degrading bacteria enriched on abietic or dehydroabietic acids were isolated from waste water from the aerated stabilization basin of a bleached kraft pulp mill. Standard biochemical tests were used to characterize each isolate. Each isolate was tested for its ability to degrade six abietane- and pimarane-type resin acids. Resin acid concentrations were determined by high pressure liquid chromatography and UV absorbance. Cluster analysis based on phenotypic characteristics identified two distinct clusters of degraders that differed in their ability to utilize carbohydrates as carbon sources. Fatty acid methyl ester analysis of representative isolates from each cluster identified A19-6a and D11-13 as Comamonas and Alcaligenes species, respectively. To determine genotypic relatedness, enterobacterial repetitive intergenic consensus sequences were used to amplify genomic DNA fragments from 10 isolates. These results supported the phenotypic analysis for all isolates tested except A19-5 and A19-6b. These two organisms were clustered closely together based on phenotype but had distinctly different banding patterns, suggesting that they are not related genotypically. All isolates degraded a subset of the six resin acid congeners. Isolates A19-3, A19-6a, A19-6b, and D11-37 were the most effective at degrading all six congeners.

  10. Air-borne xylene degradation by Bougainvillea buttiana and the role of epiphytic bacteria in the degradation.

    Science.gov (United States)

    Sangthong, S; Suksabye, P; Thiravetyan, P

    2016-04-01

    The efficiency of xylene removal from contaminated air by thirteen perennial plants was studied. The results showed that Bougainvillea buttiana had the highest xylene removal efficiency. Different parts of B. buttiana such as stems, epicuticular waxes, and plant stomata (including microorganism-associated plant leaves) can uptake xylene 53.1±1.9%, 32.3±0.9, and 14.6±0.0%, respectively. Metabolite products found in treated plants may result from stress or defense compounds triggered by exposure to xylene. Moreover, possible degradation products in B. buttiana stems were analyzed after treatment with xylene at 100 ppm. Various metabolites in B. buttiana stems such as 2,6-dimethoxyphenol, 4-hydroxy-3,5-dimethoxy benzoic acid, 1-isopropyl-4-methylbenzene, p-tolualdehyde, 2,5-dimethoxy-4-methylbenzaldehyde, 2,4-dihydroxy-2,5-dimethyl-3(2H)-furanone, 3-methyl-2-butenal, dihydroxy acetone, propanedial, and many organic acids are related to the xylene degradation pathway. In addition, microorganism-associated B. buttiana leaves especially Enterobacter cloacae LSRC11, Staphylococcus sp. A1 and Pseudomonas aeruginosa enhanced the plant resulting in quicker xylene removal.

  11. Photocatalytic degradation of methylene blue and inactivation of pathogenic bacteria using silver nanoparticles modified titanium dioxide thin films.

    Science.gov (United States)

    Ibrahim, Haytham M M

    2015-07-01

    Titanium dioxide (TiO2) is a well-studied photocatalyst that is known to break down organic molecules upon ultraviolet irradiation. TiO2 thin films were fabricated on glass substrates using the doctor-blade procedure, the film surface was modified with silver nanoparticles to increase its visible light response. The Ag-TiO2 films were characterized by transmission electron microscopy, scanning electron microscopy equipped with energy dispersive spectrometry and X-ray diffraction. The photocatalytic degradation of methylene blue (MB) and inactivation of Gram-negative bacteria Escherichia coli and Gram-positive bacteria Staphylococcus aureus were studied. The modified films presented enhanced photocatalytic efficiency and can decompose MB solution two-times faster than the unmodified TiO2 films, under illumination of sunlight. A nominal degradation (15 %) was observed in control MB under sunlight. The degradation efficiency of Ag-TiO2 films slightly decreased after five consecutive experiments. Ag-TiO2 films revealed very effective bactericidal activity against both E. coli and S. aureus. The photocatalytic inactivation toward E. coli and S. aureus showed a similar trend with much higher effectiveness toward E. coli under the same experimental conditions. The inactivation efficiency was maximized and reached 95 % for S. aureus and 97 % for E. coli, after 180 min incubation. These results demonstrate the potential of application of Ag-TiO2 photocatalysis as a method for treatment of diluted waste waters in textile industries.

  12. Study the symbiotic crude oil-degrading bacteria in the mussel Mactra stultorum collected from the Persian Gulf.

    Science.gov (United States)

    Bayat, Zeynab; Hassanshahian, Mehdi; Hesni, Majid Askari

    2016-04-15

    Symbiotic associations are complex partnerships that can lead to new metabolic capabilities and the establishment of novel organisms. The diversity of these associations is very broad and there are still many mysteries about the origin and the exact relationship between the organisms that are involved in a symbiosis. The aim of the present study is to find symbiotic crude-oil degrading bacteria in the mussels that collected from the Persian Gulf. Fifteen crude-oil degrading bacteria were isolated from Mactra stultorum mussel that collected from oil contaminated area at Persian Gulf. According to high growth rate on crude oil five strains were selected from 15 isolated strains for more study. Determination of the nucleotide sequence of the gene encoding 16S rRNA show that these isolated strains belong to: Alcanivorax dieselolei strain BHA25, Idiomarina baltica strain BHA28, A. dieselolei strain BHA30, Alcanivorax sp. strain BHA32 and Vibrio azureus strain BHA36. Analysis of remaining of crude oil by Gas Chromatography (GC) confirmed that these strains can degrade: 64%, 63%, 71%, 58% and 75% of crude oil respectively.

  13. DEGRADATION OF PETROLEUM REFINERY WASTE BY A CONSORTIUM OF HYDROCARBONOCLASTIC BACTERIA ON SEVERAL C:N:P RATIO

    Directory of Open Access Journals (Sweden)

    Syukria I Zam

    2012-01-01

    Full Text Available Bioremediation is an alternative method to treat petroleum waste using microorganism into nontoxic end product. The method is relatively cheap, effective, and environmental friendly. A key factor influencing bioremediation process for petroleum refinery waste treatment is C:N:P ratio of bacterial growth medium. The objective of this research was to obtain C:N:P ratio of Stone Mineral Salt Solution (SMSS medium that allow optimal degradation of petroleum refinery waste by consortium of hydrocarbonoclastic bacteria. C:N:P ratio of SMSS medium was adjusted to ratio of 100:10:1, 100:10:0.5, 100:5:1, and 100:5:0.5. We demonstrate that optimal degradation of petroleum refinery waste by a consortium of hydrocarbonoclastic bacteria was achieved in SMSS medium with C:N:P ratio of 100:5:1. It allowed 66.55% degradation of total petroleum hydrocarbon (TPH and 85.18 % decrease of chemical oxygen demand (COD value.

  14. Bioaugmentation of biological contact oxidation reactor (BCOR) with phenol-degrading bacteria for coal gasification wastewater (CGW) treatment.

    Science.gov (United States)

    Fang, Fang; Han, Hongjun; Zhao, Qian; Xu, Chunyan; Zhang, Linghan

    2013-12-01

    This study was conducted to evaluate the performance of the biological contact oxidation reactor (BCOR) treating coal gasification wastewater (CGW) after augmented with phenol degrading bacteria (PDB). The PDB were isolated with phenol, 4-methyl phenol, 3,5-dimethyl phenol and resorcinol as carbon resources. Much of the refractory phenolic compounds were converted into easily-biodegradable compounds in spite of low TOC removal. The bioaugmentation with PDB significantly enhanced the removal of COD, total phenols (TP) and NH3-N, with efficiencies from 58% to 78%, 66% to 80%, and 5% to 25%, respectively. In addition, the augmented BCOR exhibited strong recovery capability in TP and COD removal while recovery of NH3-N removal needed longer time. Microbial community analysis revealed that the PDB presented as dominant populations in the bacteria consortia, which in turn determined the overall performance of the system.

  15. The effect of inoculation of an indigenous bacteria on the early growth of Acacia farnesiana in a degraded area

    Directory of Open Access Journals (Sweden)

    Eliane Ceccon

    2012-03-01

    Full Text Available Restoration of native vegetation and fuelwood production are important environmental pending goals for Mexico, where years of wrong management practices resulted in ecosystemic degradation and fuelwood scarcity. In degraded areas, native rhizobial strains are often undetectable, therefore, the restoration of natural vegetation associated with an effective nodulation of the leguminous trees is mostly appropriate. Sinorhizobium americanum is a native nitrogen-fixing bacteria isolated from nodules of the native Acacia species in the region. Acacia farnesiana is a multipurpose leguminous shrub from Mexican seasonally dry tropical forests (SDTF. In this study we analyzed the effect of inoculation with S. americanum on A. farnesiana growth in a greenhouse and in a very degraded area and compared with non-inoculated seedlings. In a greenhouse, we measured the biomass dry weight of different parts of the plant, using destructive sampling after 15, 20, 30, 45 and 120 days of growth. We also calculated the relative growth rate (RGR and the resources allocation (root/shoot weight ratio and root length/root dry weight of seedlings. In a degraded area we measured the seedling length and survival and calculated the RGR. In the greenhouse and in the degraded area, the inoculation positively affected the growth of seedlings. However in the greenhouse, the inoculation did not have effect on resource allocation patterns. Therefore, the inoculation with Sinorhizobium americanum could improve the A. farnesiana growth and the re-establishment of important plant-soil interactions in degraded areas, being a recommendable technique for land restoration and the improvement of fuelwood production.

  16. Enhancing the biofiltration of geosmin by seeding sand filter columns with a consortium of geosmin-degrading bacteria.

    Science.gov (United States)

    McDowall, Bridget; Hoefel, Daniel; Newcombe, Gayle; Saint, Christopher P; Ho, Lionel

    2009-02-01

    Geosmin is a secondary metabolite that can be produced by many species of cyanobacteria and Actinomycetes. It imparts a musty/earthy taste and odour to drinking water which can result in consumer complaints and a general perception that there is a problem with the water quality. As geosmin is recalcitrant to conventional water treatment, processes are sought to ensure effective removal of this compound from potable water. Biological filtration (biofiltration) is an attractive option for geosmin removal as this compound has been shown to be biodegradable. However, effective biofiltration of geosmin can be site specific as it is highly dependent upon the types of organism present and there is often an extended acclimation period before efficient removals are achieved. We report here, a novel approach to enhance the biofiltration of geosmin by seeding sand filter columns with a bacterial consortium previously shown to be capable of effectively degrading geosmin. Geosmin removals of up to 75% were evident through sand columns which had been inoculated with the geosmin-degrading bacteria, when compared with non-inoculated sand columns where geosmin removals were as low as 25%. These low geosmin removals through the non-inoculated sand columns are consistent with previous studies and were attributed to physical/abiotic losses. The presence of an existing biofilm was shown to influence geosmin removal, as the biofilm allowed for greater attachment of the geosmin-degrading consortium (as determined by an ATP assay), and enhanced removals of geosmin. Minimal difference in geosmin removal was observed when the geosmin-degrading bacteria were inoculated into the sand columns containing either an active or inactive biofilm.

  17. Modified sublimation to isolate phenanthrene-degrading bacteria of the genera Sphingomonas and Burkholderia from Xiamen oil port.

    Science.gov (United States)

    Huang, X; Tian, Y; Luo, Y R; Liu, H J; Zheng, Wei; Zheng, T L

    2008-01-01

    Sublimation was developed by Alley and Brown (2000) in order to isolate bacterial strains that were capable of degrading water insoluble compounds. In this study, sublimation was modified by the use of nutritional agar plates, instead of mineral salt agar, to isolate phenanthrene-degrading bacteria from a mixed culture that had been enriched under the selective pressure of high phenanthrene content. Five strains were obtained with different morphology and degradation ability. Based on the 16S rDNA sequence, two of them were classified as species of the genus Sphingomonas; the others as species of the genus Burkholderia. Denaturing gradient gel electrophoresis (DGGE) was introduced to detect dynamic changes in the bacterial community during enrichment batch culture, and to determine any correlation between the five isolates and the phenanthrene-degrading consortium. The DGGE profile indicated that these five isolates corresponded to four dominant bands of the consortium. Compared to traditional means of isolation, we concluded that modified sublimation is effective and more convenient.

  18. Screening of indigenous oxalate degrading lactic acid bacteria from human faeces and South Indian fermented foods: assessment of probiotic potential.

    Science.gov (United States)

    Gomathi, Sivasamy; Sasikumar, Ponnusamy; Anbazhagan, Kolandaswamy; Sasikumar, Sundaresan; Kavitha, Murugan; Selvi, M S; Selvam, Govindan Sadasivam

    2014-01-01

    Lactic acid bacteria (LAB) have the potential to degrade intestinal oxalate and this is increasingly being studied as a promising probiotic solution to manage kidney stone disease. In this study, oxalate degrading LAB were isolated from human faeces and south Indian fermented foods, subsequently assessed for potential probiotic property in vitro and in vivo. Based on preliminary characteristics, 251 out of 673 bacterial isolates were identified as LAB. A total of 17 strains were found to degrade oxalate significantly between 40.38% and 62.90% and were subjected to acid and bile tolerance test. Among them, nine strains exhibited considerable tolerance up to pH 3.0 and at 0.3% bile. These were identified as Lactobacillus fermentum and Lactobacillus salivarius using 16S rDNA sequencing. Three strains, Lactobacillus fermentum TY5, Lactobacillus fermentum AB1, and Lactobacillus salivarius AB11, exhibited good adhesion to HT-29 cells and strong antimicrobial activity. They also conferred resistance to kanamycin, rifampicin, and ampicillin, but were sensitive to chloramphenicol and erythromycin. The faecal recovery rate of these strains was observed as 15.16% (TY5), 6.71% (AB1), and 9.3% (AB11) which indicates the colonization ability. In conclusion, three efficient oxalate degrading LAB were identified and their safety assessments suggest that they may serve as good probiotic candidates for preventing hyperoxaluria.

  19. Screening of Indigenous Oxalate Degrading Lactic Acid Bacteria from Human Faeces and South Indian Fermented Foods: Assessment of Probiotic Potential

    Directory of Open Access Journals (Sweden)

    Sivasamy Gomathi

    2014-01-01

    Full Text Available Lactic acid bacteria (LAB have the potential to degrade intestinal oxalate and this is increasingly being studied as a promising probiotic solution to manage kidney stone disease. In this study, oxalate degrading LAB were isolated from human faeces and south Indian fermented foods, subsequently assessed for potential probiotic property in vitro and in vivo. Based on preliminary characteristics, 251 out of 673 bacterial isolates were identified as LAB. A total of 17 strains were found to degrade oxalate significantly between 40.38% and 62.90% and were subjected to acid and bile tolerance test. Among them, nine strains exhibited considerable tolerance up to pH 3.0 and at 0.3% bile. These were identified as Lactobacillus fermentum and Lactobacillus salivarius using 16S rDNA sequencing. Three strains, Lactobacillus fermentum TY5, Lactobacillus fermentum AB1, and Lactobacillus salivarius AB11, exhibited good adhesion to HT-29 cells and strong antimicrobial activity. They also conferred resistance to kanamycin, rifampicin, and ampicillin, but were sensitive to chloramphenicol and erythromycin. The faecal recovery rate of these strains was observed as 15.16% (TY5, 6.71% (AB1, and 9.3% (AB11 which indicates the colonization ability. In conclusion, three efficient oxalate degrading LAB were identified and their safety assessments suggest that they may serve as good probiotic candidates for preventing hyperoxaluria.

  20. Degradation of Polycyclic Aromatic Hydrocarbon Pyrene by Biosurfactant-Producing Bacteria Gordonia cholesterolivorans AMP 10

    OpenAIRE

    2016-01-01

    Pyrene degradation and biosurfactant activity by a new strain identified as Gordonia cholesterolivorans AMP 10 were studied. The strain grew well and produced effective biosurfactants in the presence of glucose, sucrose, and crude oil. The biosurfactants production was detected by the decreased surface tension of the medium and emulsification activity.  Analysis of microbial growth parameters showed that AMP10 grew best at 50 µg mL-1 pyrene concentration, leading to 96 % degradation of pyrene...

  1. Identification of triclosan-degrading bacteria in a triclosan enrichment culture using stable isotope probing.

    Science.gov (United States)

    Lee, Do Gyun; Cho, Kun-Ching; Chu, Kung-Hui

    2014-02-01

    Triclosan, a widely used antimicrobial agent, is an emerging contaminant in the environment. Despite its antimicrobial character, biodegradation of triclosan has been observed in pure cultures, soils and activated sludge. However, little is known about the microorganisms responsible for the degradation in mixed cultures. In this study, active triclosan degraders in a triclosan-degrading enrichment culture were identified using stable isotope probing (SIP) with universally (13)C-labeled triclosan. Eleven clones contributed from active microorganisms capable of uptake the (13)C in triclosan were identified. None of these clones were similar to known triclosan-degraders/utilizers. These clones distributed among α-, β-, or γ-Proteobacteria: one belonging to Defluvibacter (α-Proteobacteria), seven belonging to Alicycliphilus (β-Proteobacteria), and three belonging to Stenotrophomonas (γ-Proteobacteria). Successive additions of triclosan caused a significant shift in the microbial community structure of the enrichment culture, with dominant ribotypes belonging to the genera Alicycliphilus and Defluvibacter. Application of SIP has successfully identified diverse uncultivable triclosan-degrading microorganisms in an activated sludge enrichment culture. The results of this study not only contributed to our understanding of the microbial ecology of triclosan biodegradation in wastewater, but also suggested that triclosan degraders are more phylogenetically diverse than previously reported.

  2. Co-metabolic conversion of toluene in anaerobic n-alkane-degrading bacteria.

    Science.gov (United States)

    Rabus, Ralf; Jarling, René; Lahme, Sven; Kühner, Simon; Heider, Johann; Widdel, Friedrich; Wilkes, Heinz

    2011-09-01

    Diverse microorganisms have been described to degrade petroleum hydrocarbons anaerobically. Strains able to utilize n-alkanes do not grow with aromatic hydrocarbons, whereas strains able to utilize aromatic hydrocarbons do not grow with n-alkanes. To investigate this specificity in more detail, three anaerobic n-alkane degraders (two denitrifying, one sulfate-reducing) and eight anaerobic alkylbenzene degraders (five denitrifying, three sulfate-reducing) were incubated with mixtures of n-alkanes and toluene. Whereas the toluene degradationers formed only the characteristic toluene-derived benzylsuccinate and benzoate, but no n-alkane-derived metabolites, the n-alkane degraders formed toluene-derived benzylsuccinate, 4-phenylbutanoate, phenylacetate and benzoate besides the regular n-alkane-derived (1-methylalkyl)succinates and methyl-branched alkanoates. The co-metabolic conversion of toluene by anaerobic n-alkane degraders to the level of benzoate obviously follows the anaerobic n-alkane degradation pathway with C-skeleton rearrangement and decarboxylation rather than the β-oxidation pathway of anaerobic toluene metabolism. Hence, petroleum-derived aromatic metabolites detectable in anoxic environments may not be exclusively formed by genuine alkylbenzene degraders. In addition, the hitherto largely unexplored fate of fumarate hydrogen during the activation reactions was examined with (2,3-(2) H(2) )fumarate as co-substrate. Deuterium was completely exchanged with hydrogen at the substituted carbon atom (C-2) of the succinate adducts of n-alkanes, whereas it is retained in toluene-derived benzylsuccinate, regardless of the type of enzyme catalysing the fumarate addition reaction.

  3. Stable carbon isotope fractionation in chlorinated ethene degradation by bacteria expressing three toluene oxygenases

    Directory of Open Access Journals (Sweden)

    Scott eClingenpeel

    2012-02-01

    Full Text Available One difficulty in using bioremediation at a contaminated site is demonstrating that biodegradation is actually occurring in situ. The stable isotope composition of contaminants may help with this, since they can serve as an indicator of biological activity. To use this approach it is necessary to establish how a particular biodegradation pathway affects the isotopic composition of a contaminant. This study examined bacterial strains expressing three aerobic enzymes for their effect on the 13C/12C ratio when degrading both trichloroethene (TCE and cis-1,2-dichloroethene (c-DCE: toluene 3-monoxygenase, toluene 4-monooxygenase, and toluene 2,3-dioxygenase. We found no significant differences in fractionation among the three enzymes for either compound. Aerobic degradation of c-DCE occurred with low fractionation producing δ13C enrichment factors of -0.9±0.5 to -1.2±0.5, in contrast to reported anaerobic degradation δ13C enrichment factors of -14.1‰ to -20.4‰. Aerobic degradation of TCE resulted in δ13C enrichment factors of -11.6±4.1‰ to -14.7±3.0‰ which overlap reported δ13C enrichment factors for anaerobic TCE degradation of -2.5‰ to -13.8‰. The data from this study suggest that stable isotopes could serve as a diagnostic for detecting aerobic biodegradation of TCE by toluene oxygenases at contaminated sites.

  4. Use of bromodeoxyuridine immunocapture to identify psychrotolerant phenanthrene-degrading bacteria in phenanthrene-enriched polluted Baltic Sea sediments

    Energy Technology Data Exchange (ETDEWEB)

    Edlund, A.; Jansson, J.

    2008-05-01

    The aim of this study was to enrich and identify psychrotolerant phenanthrenedegrading bacteria from polluted Baltic Sea sediments. Polyaromatic hydrocarbon (PAH)-contaminated sediments were spiked with phenanthrene and incubated for 2 months in the presence of bromodeoxyuridine that is incorporated into the DNA of replicating cells. The bromodeoxyuridine-incorporated DNA was extracted by immunocapture and analyzed by terminal-restriction fragment length polymorphism and 16S rRNA gene cloning and sequencing to identify bacterial populations that were growing. In addition, degradation genes were quantified in the bromodeoxyuridine-incorporated DNA by real-time PCR. Phenanthrene concentrations decreased after 2 months of incubation in the phenanthrene-enriched sediments and this reduction correlated to increases in copy numbers of xylE and phnAc dioxygenase genes. Representatives of Exiguobacterium, Schewanella,Methylomonas, Pseudomonas, Bacteroides and an uncultured Deltaproteobacterium and a Gammaproteobacterium dominated the growing community in the phenanthrene spiked sediments. Isolates that were closely related to three of these bacteria (two pseudomonads and an Exiguobacterium sp.) could reduce phenanthrene concentrations in pure cultures and they all harbored phnAc dioxygenase genes. These results confirm that this combination of culture-based and molecular approaches was useful for identification of actively growing bacterial species with a high potential for phenanthrene degradation.

  5. Cultivating High Efficient Bacteria of Degrading Pulping Wastewater by Ultraviolet Mutagenic Technology

    Institute of Scientific and Technical Information of China (English)

    WU Yi-ning; ZHANG Ying; LIU Shi-rui; REN Nan-qi

    2004-01-01

    Instead of pure bacteria, induction mutation of activated sludge by ultraviolet (Uv) was studied and used to treat pulping wastewater by continuous-flow. The result showed the mutagenic activated sludge had remarkable effect and application potential in pulping wastewater treatment. Comparing with common activated sludge, the mutagenic activated sludge was more suitable for lignose decomposition and had high decomposing efficiency.

  6. Gene clusters involved in isethionate degradation by terrestrial and marine bacteria.

    KAUST Repository

    Weinitschke, Sonja

    2010-01-01

    Ubiquitous isethionate (2-hydroxyethanesulfonate) is dissimilated by diverse bacteria. Growth of Cupriavidus necator H16 with isethionate was observed, as was inducible membrane-bound isethionate dehydrogenase (IseJ) and inducible transcription of the genes predicted to encode IseJ and a transporter (IseU). Biodiversity in isethionate transport genes was observed and investigated by transcription experiments.

  7. Soil bacteria showing a potential of chlorpyrifos degradation and plant growth enhancement

    Directory of Open Access Journals (Sweden)

    Shamsa Akbar

    Full Text Available ABSTRACT Background: Since 1960s, the organophosphate pesticide chlorpyrifos has been widely used for the purpose of pest control. However, given its persistence and toxicity towards life forms, the elimination of chlorpyrifos from contaminated sites has become an urgent issue. For this process bioremediation is the method of choice. Results: Two bacterial strains, JCp4 and FCp1, exhibiting chlorpyrifos-degradation potential were isolated from pesticide contaminated agricultural fields. These isolates were able to degrade 84.4% and 78.6% of the initial concentration of chlorpyrifos (100 mg L-1 within a period of only 10 days. Based on 16S rRNA sequence analysis, these strains were identified as Achromobacter xylosoxidans (JCp4 and Ochrobactrum sp. (FCp1. These strains exhibited the ability to degrade chlorpyrifos in sterilized as well as non-sterilized soils, and were able to degrade 93-100% of the input concentration (200 mg kg-1 within 42 days. The rate of degradation in inoculated soils ranged from 4.40 to 4.76 mg-1 kg-1 d-1 with rate constants varying between 0.047 and 0.069 d-1. These strains also displayed substantial plant growth promoting traits such as phosphate solubilization, indole acetic acid production and ammonia production both in absence as well as in the presence of chlorpyrifos. However, presence of chlorpyrifos (100 and 200 mg L-1 was found to have a negative effect on indole acetic acid production and phosphate solubilization with percentage reduction values ranging between 2.65-10.6% and 4.5-17.6%, respectively. Plant growth experiment demonstrated that chlorpyrifos has a negative effect on plant growth and causes a decrease in parameters such as percentage germination, plant height and biomass. Inoculation of soil with chlorpyrifos-degrading strains was found to enhance plant growth significantly in terms of plant length and weight. Moreover, it was noted that these strains degraded chlorpyrifos at an increased rate (5

  8. Effect of Degradation Compounds from Steam Explosion Pretreatment of Popular Biomass on Kluyveromyces marxianus; Efecto de los productos de degradacion originados en la explosion por vapor de biomasa de chopo sobre Kluyveromyces marxianus

    Energy Technology Data Exchange (ETDEWEB)

    Oliva Dominguez, J. M.

    2003-07-01

    The Simultaneous Saccharificationa and Fermentation (SSF) process has been suggested as one of the most promising methods to obtain ethanol from lignocellulose. This SSF process requires a previous pretreatment step in order to increase accessibility of cellulose to enzymatic hydrolysis. Auto hydrolysis steam explosion pretreatment has been recognised as a cost-effective method for p retreating lignocellulosic biomass. During the steam explosion pretreatment of lignocellulose substrates various toxic compounds, that could inhibit microbial fermentation, are formed. These inhibitor compounds belong to three major groups: weak acids, furans and phenolic compounds. In this study, the filtrate from steam-pretreated poplar was analysed to identify degradation compounds. The effect of identified compounds on growth and ethanol production by Kluyveromyces marxianus CECT 10875 was tested in experiments where those compounds were added individually or in combination to a synthetic medium. The level of inhibition on yeast strain growth and ethanolic fermentation was determined. The effect of initial pH on toxicity of organic acids and assimilation of these compounds by the yeast was also studied. At concentrations found in the pre hydrolysate none of individual compounds significantly effect the fermentation. For all tested compounds ethanol production was inhibited to a lesser extent than growth. Finally, different detoxification methods were applied to the liquid fraction in order to use it as fermentation broth. the detoxification methods included: treatment with alkali (sodium hydroxide or calcium hydroxide), evaporation (25%, 50% or 75% of the initial volume), advanced oxidation process (Fenton's reaction) and detoxification with zeolites. The changes in the concentration of toxic compounds were determined and the fermentability of the detoxified liquid fraction was assayed after applying those detoxification methods. (Author)

  9. Diverse bacteria with lignin degrading potentials isolated from two ranks of coal

    Directory of Open Access Journals (Sweden)

    Lu Wang

    2016-09-01

    Full Text Available Taking natural coal as a seed bank of bacterial strains able to degrade lignin that is with molecular structure similar to coal components, we isolated 393 and 483 bacterial strains from a meager lean coal sample from Hancheng coalbed and a brown coal sample from Bayannaoer coalbed, respectively by using different media. Statistical analysis showed that isolates were significantly more site-specific than medium-specific. Of the 876 strains belonging to 27 genera in Actinobacteria, Firmicutes, and Proteobacteria, 612 were positive for lignin degradation function, including 218 strains belonging to 35 species in Hancheng and 394 strains belonging to 19 species in Zhongqi. Among them, the dominant lignin-degrading strains were Thauera (Hancheng, Arthrobacter (Zhongqi and Rhizobium (both. The genes encoding the laccases- or laccase-like multicopper oxidases, key enzymes in lignin production and degradation, were detected in three genera including Massilia for the first time, which was in high expression by real time PCR (qRT-PCR detection, confirming coal as a good seed bank.

  10. Identification of triclosan-degrading bacteria using stable isotope probing, fluorescence in situ hybridization and microautoradiography

    DEFF Research Database (Denmark)

    Lolas, Ihab Bishara Lolas; Chen, Xijuan; Bester, Kai

    2012-01-01

    -based stable isotope probing (DNA-SIP) combined with microautoradiography-fluorescence in situ hybridization (MAR-FISH) was applied to identify active triclosan degraders in an enrichment culture inoculated with activated sludge. Clone library sequences of 16S rRNA genes derived from the heavy DNA fractions...

  11. Novel Phenanthrene-Degrading Bacteria Identified by DNA-Stable Isotope Probing.

    Directory of Open Access Journals (Sweden)

    Longfei Jiang

    Full Text Available Microorganisms responsible for the degradation of phenanthrene in a clean forest soil sample were identified by DNA-based stable isotope probing (SIP. The soil was artificially amended with either 12C- or 13C-labeled phenanthrene, and soil DNA was extracted on days 3, 6 and 9. Terminal restriction fragment length polymorphism (TRFLP results revealed that the fragments of 219- and 241-bp in HaeIII digests were distributed throughout the gradient profile at three different sampling time points, and both fragments were more dominant in the heavy fractions of the samples exposed to the 13C-labeled contaminant. 16S rRNA sequencing of the 13C-enriched fraction suggested that Acidobacterium spp. within the class Acidobacteria, and Collimonas spp. within the class Betaproteobacteria, were directly involved in the uptake and degradation of phenanthrene at different times. To our knowledge, this is the first report that the genus Collimonas has the ability to degrade PAHs. Two PAH-RHDα genes were identified in 13C-labeled DNA. However, isolation of pure cultures indicated that strains of Staphylococcus sp. PHE-3, Pseudomonas sp. PHE-1, and Pseudomonas sp. PHE-2 in the soil had high phenanthrene-degrading ability. This emphasizes the role of a culture-independent method in the functional understanding of microbial communities in situ.

  12. Effect of trichloroethylene on the competitive behavior of toluene-degrading bacteria

    NARCIS (Netherlands)

    Mars, Astrid E.; Prins, Gjalt T.; Wietzes, Pieter; Koning, Wim de; Janssen, Dick B.

    1998-01-01

    The influence of trichloroethylene (TCE) on a mixed culture of four different toluene-degrading bacterial strains (Pseudomonas putida mt-2, P. putida F1, P. putida GJ31, and Burkholderia cepacia G4) was studied with a fed-batch culture. The strains were competing for toluene, which was added at a ve

  13. Isolation and Characterization of Methyl Parathion-degrading Bacteria Based on Microbial Sensor Construction

    Directory of Open Access Journals (Sweden)

    GENG Fang-fang

    2014-12-01

    Full Text Available Methyl parathion (MP, a kind of typical organophosphates pesticides (OPs, is widely used as agricultural insecticides. However, due to their neurotoxic effects on humans, the elimination of OPs has become increasingly important. Microbial sensors are consisted of biological components and transducers. Owing to their attractive advantages including low cost, easy of miniaturization and excellent selectivity, they have been widely used for environmental analysis. In this paper, four novel bacterial strains capable of utilizing methyl parathion as the sole carbon source were isolated from pesticide contaminated soils. These four isolates were identified based on morphological characteristics and 16S rRNA gene sequences analysis, and their capability of degrading methyl parathion were investigated by high performance liquid chromatography. The highest degrading efficiency strain was selected for further study of degrading mechanism. The results indicated that degradation rate of these four strains were all over 78% after incubation at 30 ℃, pH 7.0 for 7 d with the original concentration of methyl parathion 50 mg·L-1. The highest degradation rate was up to 100%. 16S rRNA gene sequences indicated that strain MP-6 was affiliated into the genus klebsiella. The LC-MS results indicated that methyl parathion was hydrolyzed to dimethyl thiophosphoric acid and p-nitrophenol by MP-6. A little of p-nitrophenol molecules could be further metabolized to 4-nitrocatechol and 1, 2, 4-benzenetrio. The results indicated that based on detecting the potential signal of intermediate product p-nitrophenol, the strain MP-6 could be used to construct microbial sensors for determination of organophosphorus pesticides in environment.

  14. Phylogenetic and functional diversity of alkane degrading bacteria associated with Italian ryegrass (Lolium multiflorum) and Birdsfoot trefoil (Lotus corniculatus) in a petroleum oil-contaminated environment.

    Science.gov (United States)

    Yousaf, Sohail; Andria, Verania; Reichenauer, Thomas G; Smalla, Kornelia; Sessitsch, Angela

    2010-12-15

    Twenty-six different plant species were analyzed regarding their performance in soil contaminated with petroleum oil. Two well-performing species, Italian ryegrass (Lolium multiflorum var. Taurus), Birdsfoot trefoil (Lotus corniculatus var. Leo) and the combination of these two plants were selected to study the ecology of plant-associated, culturable alkane-degrading bacteria. Hydrocarbon degrading bacteria were isolated from the rhizosphere, root interior and shoot interior and subjected to the analysis of 16S rRNA gene, the 16S and 23S rRNA intergenic spacer region and alkane hydroxylase genes. Furthermore, we investigated whether alkane hydroxylase genes are plasmid located. Higher numbers of culturable, alkane-degrading bacteria were associated with Italian ryegrass, which were also characterized by a higher diversity, particularly in the plant interior. Only half of the isolated bacteria hosted known alkane hydroxylase genes (alkB and cytochrome P153-like). Degradation genes were found both on plasmids as well as in the chromosome. In regard to application of plants for rhizodegradation, where support of numerous degrading bacteria is essential for efficient break-down of pollutants, Italian ryegrass seems to be more appropriate than Birdsfoot trefoil.

  15. Synchrotron FT-FIR spectroscopy of nitro-derivatives vapors: New spectroscopic signatures of explosive taggants and degradation products

    Science.gov (United States)

    Cuisset, Arnaud; Gruet, Sébastien; Pirali, Olivier; Chamaillé, Thierry; Mouret, Gaël

    2014-11-01

    We report on the first successful rovibrational study of gas phase mononitrotoluene and dinitrotoluene in the TeraHertz/Far-Infrared (THz/FIR) spectral domain. Using the AILES beamline of the synchrotron SOLEIL and a Fourier Transform spectrometer connected to multipass cells, the low-energy vibrational cross-sections of the different isomers of mononitrotoluene have been measured and compared to calculated spectra with the density functional theory including the anharmonic contribution. The active FIR modes of 2,4 and 2,6 dinitrotoluene have been assigned to the vibrational bands measured by Fourier Transform FIR spectroscopy of the gas-phase molecular cloud produced in an evaporating/recondensating system. This study highlights the selectivity of gas phase THz/FIR spectroscopy allowing an unambiguous recognition and discrimination of nitro-aromatic compounds used as explosive taggants.

  16. Deep-sea oil plume enriches psychrophilic oil-degrading bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Hazen, T.C.; Dubinsky, E.A.; DeSantis, T.Z.; Andersen, G.L.; Piceno, Y.M.; Singh, N.; Jansson, J.K.; Probst, A.; Borglin, S.E.; Fortney, J.L.; Stringfellow, W.T.; Bill, M.; Conrad, M.S.; Tom, L.M.; Chavarria, K.L.; Alusi, T.R.; Lamendella, R.; Joyner, D.C.; Spier, C.; Auer, M.; Zemla, M.L.; Chakraborty, R.; Sonnenthal, E.L.; D' haeseleer, P.; Holman, H.-Y. N.; Osman, S.; Lu, Z.; Van Nostrand, J.D.; Deng, Y.; Zhou, J.; Mason, O.U.

    2010-09-01

    The biological effects and expected fate of the vast amount of oil in the Gulf of Mexico from the Deepwater Horizon blowout are unknown owing to the depth and magnitude of this event. Here, we report that the dispersed hydrocarbon plume stimulated deep-sea indigenous {gamma}-Proteobacteria that are closely related to known petroleum degraders. Hydrocarbon-degrading genes coincided with the concentration of various oil contaminants. Changes in hydrocarbon composition with distance from the source and incubation experiments with environmental isolates demonstrated faster-than-expected hydrocarbon biodegradation rates at 5 C. Based on these results, the potential exists for intrinsic bioremediation of the oil plume in the deep-water column without substantial oxygen drawdown.

  17. Effect of Direct Electric Current on the Cell Surface Properties of Phenol-Degrading Bacteria

    OpenAIRE

    Luo, Qishi; Wang, Hui; Zhang, Xihui; Qian, Yi

    2005-01-01

    The change in cell surface properties in the presence of electric currents is of critical concern when the potential to manipulate bacterial movement with electric fields is evaluated. In this study, the effects of different direct electric currents on the cell surface properties involved in bacterial adhesion were investigated by using a mixed phenol-degrading bacterial culture in the exponential growth phase. The traits investigated were surface hydrophobicity (measured by adherence to n-oc...

  18. Symbiotic bacteria living in the hoopoe's uropygial gland prevent feather degradation.

    Science.gov (United States)

    Ruiz-Rodríguez, M; Valdivia, E; Soler, Juan J; Martín-Vivaldi, M; Martín-Platero, A M; Martínez-Bueno, M

    2009-11-01

    Among potential agents that might damage bird feathers are certain microorganisms which secrete enzymes that digest keratin, as is the case of the ubiquitous bacterium Bacillus licheniformis, present in both the feathers and skin of wild birds. It is therefore a good candidate for testing the effects of bird defences against feather-degrading microorganisms. One of these defences is the oil secreted by the uropygial gland, which birds use to protect their feathers against parasites. In previous studies we have shown how Enterococcus faecalis strains isolated from nestling hoopoes exert antagonistic effects against B. licheniformis, mediated by the production of bacteriocins. Consequently we hypothesized that this enterococcus and the bacteriocins it engenders might act as a defence against feather-degrading microorganisms in hoopoes. We investigated this hypothesis in a series of laboratory experiments and evaluated the extent to which the keratinolytic effects caused by B. licheniformis were reduced by the E. faecalis MRR10-3 strain, isolated from hoopoes, and its bacteriocins. In different treatments, feathers or pure keratin was incubated with B. licheniformis, B. licheniformis together with E. faecalis MRR10-3, and B. licheniformis together with the bacteriocins produced by E. faecalis MRR10-3. Our results were in accordance with the predicted effects on hoopoe feathers. There was a significant decrease both in pure keratin loss and in feather degradation in the presence of the symbiotic bacterium or its bacteriocin. These results suggest that by preening their feathers hoopoes benefit from their symbiotic relationship with bacteriocin-producing enterococci, which constitute a chemical defence against feather degradation.

  19. Aerobic TCE degradation by encapsulated toluene-oxidizing bacteria, Pseudomonas putida and Bacillus spp.

    Science.gov (United States)

    Kim, Seungjin; Bae, Wookeun; Hwang, Jungmin; Park, Jaewoo

    2010-01-01

    The degradation rates of toluene and trichloroethylene (TCE) by Pseudomonas putida and Bacillus spp. that were encapsulated in polyethylene glycol (PEG) polymers were evaluated in comparison with the results of exposure to suspended cultures. PEG monomers were polymerized together with TCE-degrading microorganisms, such that the cells were encapsulated in and protected by the matrices of the PEG polymers. TCE concentrations were varied from 0.1 to 1.5 mg/L. In the suspended cultures of P. putida, the TCE removal rate decreased as the initial TCE concentration increased, revealing TCE toxicity or a limitation of reducing power, or both. When the cells were encapsulated, an initial lag period of about 10-20 h was observed for toluene degradation. Once acclimated, the encapsulated P. putida cultures were more tolerant to TCE at an experimental range of 0.6-1.0 mg/L and gave higher transfer efficiencies (mass TCE transformed/mass toluene utilized). When the TCE concentration was low (e.g., 0.1 mg/L) the removal of TCE per unit mass of cells (specific removal) was significantly lower, probably due to a diffusion limitation into the PEG pellet. Encapsulated Bacillus spp. were able to degrade TCE cometabolically. The encapsulated Bacillus spp. gave significantly higher values than did P. putida in the specific removal and the transfer efficiency, particularly at relatively high TCE concentration of approximately 1.0±0.5 mg/L. The transfer efficiency by encapsulated Bacillus spp. in this study was 0.27 mgTCE/mgToluene, which was one to two orders of magnitude greater than the reported values.

  20. Isolation and Characterization of Polyacrylamide-Degrading Bacteria from Dewatered Sludge

    Directory of Open Access Journals (Sweden)

    Feng Yu

    2015-04-01

    Full Text Available Polyacrylamide (PAM is a water-soluble polymer that is widely used as a flocculant in sewage treatment. The accumulation of PAM affects the formation of dewatered sludge and potentially produces hazardous monomers. In the present study, the bacterial strain HI47 was isolated from dewatered sludge. This strain could metabolize PAM as its sole nutrient source and was subsequently identified as Pseudomonas putida. The efficiency of PAM degradation was 31.1% in 7 days and exceeded 45% under optimum culture condition (pH 7.2, 39 °C and 100 rpm. The addition of yeast extract and glucose improved the bacterial growth and PAM degradation. The degraded PAM samples were analyzed by gel-filtration chromatography, Fourier transform infrared and high-performance liquid chromatography. The results showed that high-molecular-weight PAM was partly cleaved to small molecular oligomer derivatives and part of the amide groups of PAM had been converted to carboxyl groups. The biodegradation did not accumulate acrylamide monomers. Based on the SDS-PAGE and N-terminal sequencing results, the PAM amide groups were converted into carboxyl groups by a PAM-induced extracellular enzyme from the aliphatic amidase family.

  1. Bacteria capable of degrading anthracene, phenanthrene, and fluoranthene as revealed by DNA based stable-isotope probing in a forest soil.

    Science.gov (United States)

    Song, Mengke; Jiang, Longfei; Zhang, Dayi; Luo, Chunling; Wang, Yan; Yu, Zhiqiang; Yin, Hua; Zhang, Gan

    2016-05-05

    Information on microorganisms possessing the ability to metabolize different polycyclic aromatic hydrocarbons (PAHs) in complex environments helps in understanding PAHs behavior in natural environment and developing bioremediation strategies. In the present study, stable-isotope probing (SIP) was applied to investigate degraders of PAHs in a forest soil with the addition of individually (13)C-labeled phenanthrene, anthracene, and fluoranthene. Three distinct phylotypes were identified as the active phenanthrene-, anthracene- and fluoranthene-degrading bacteria. The putative phenanthrene degraders were classified as belonging to the genus Sphingomona. For anthracene, bacteria of the genus Rhodanobacter were the putative degraders, and in the microcosm amended with fluoranthene, the putative degraders were identified as belonging to the phylum Acidobacteria. Our results from DNA-SIP are the first to directly link Rhodanobacter- and Acidobacteria-related bacteria with anthracene and fluoranthene degradation, respectively. The results also illustrate the specificity and diversity of three- and four-ring PAHs degraders in forest soil, contributes to our understanding on natural PAHs biodegradation processes, and also proves the feasibility and practicality of DNA-based SIP for linking functions with identity especially uncultured microorganisms in complex microbial biota.

  2. Composition and conservation of the mRNA-degrading machinery in bacteria

    Directory of Open Access Journals (Sweden)

    Kaberdin Vladimir R

    2011-03-01

    Full Text Available Abstract RNA synthesis and decay counteract each other and therefore inversely regulate gene expression in pro- and eukaryotic cells by controlling the steady-state level of individual transcripts. Genetic and biochemical data together with recent in depth annotation of bacterial genomes indicate that many components of the bacterial RNA decay machinery are evolutionarily conserved and that their functional analogues exist in organisms belonging to all kingdoms of life. Here we briefly review biological functions of essential enzymes, their evolutionary conservation and multienzyme complexes that are involved in mRNA decay in Escherichia coli and discuss their conservation in evolutionarily distant bacteria.

  3. [The microflora of sourdough. XVIII. The protein degrading capabilities of lactic acid bacteria in sourdough].

    Science.gov (United States)

    Spicher, G; Nierle, W

    1984-05-01

    Acidification of the dough by the use of sourdough or acidifiers is necessary not only for good baking quality of rye flour but it is also very important for development of the typical sensory characteristics of rye bread. We confirmed that the lactic acid bacteria of sour dough are proteolytic. Proteolytic effects are observed in the increase of the amino acid content during fermentation. A marked increase was found in the content of leucine, alanine, valine, isoleucine, glutamic acid, glutamine, arginine, lysine, methionine, phenylalanine, tyrosine and serine. Lactobacillus plantarum showed a higher proteolytic activity than L. brevis ssp. lindneri or L. fructivorans.

  4. Degradation of phenolic contaminants in ground water by anaerobic bacteria: St. Louis Park, Minnesota

    Science.gov (United States)

    Ehrlich, G.G.; Goerlitz, D.F.; Godsy, E.M.; Hult, M.F.

    1982-01-01

    Coal-tar derivatives from a coal-tar distillation and wood-treating plant that operated from 1918 to 1972 at St. Louis Park, Minnesota contaminated the near-surface ground water. Solutions of phenolic compounds and a water-immiscible mixture of polynuclear aromatic compounds accumulated in wetlands near the plant site and entered the aquifer. The concentration of phenolic compounds in the aqueous phase under the wetlands is about 30 mg/1 but decreases to less than 0.2 mg/1 at a distance of 430 m immediately downgradient from the source. Concentrations of naphthalene (the predominant polynuclear compound in the ground water) and sodium (selected as a conservative tracer) range from about 20 mg/1 and 430 mg/1 in the aqueous phase at the source to about 2 mg/1 and 120 mg/1 at 430 m downgradient, respectively. Phenolic compounds and naphthalene are disappearing faster than expected if only dilution were occurring. Sorption of phenolic compounds on aquifer sediments is negligible but naphthalene is slightly sorbed. Anaerobic biodegradation of phenolic compounds is primarily responsible for the observed attenuation. Methane was found only in water samples from the contaminated zone (2-20 mg/1). Methane-producing bacteria were found only in water from the contaminated zone. Methane was produced in laboratory cultures of contaminated water inoculated with bacteria from the contaminated zone. Evidence for anaerobic biodegradation of naphthalene under either field or laboratory conditions was not obtained.

  5. Degradative Plasmid and Heavy Metal Resistance Plasmid Naturally Coexist in Phenol and Cyanide Assimilating Bacteria

    Directory of Open Access Journals (Sweden)

    Bahig E.  Deeb

    2009-01-01

    Full Text Available Problem statement: Heavy metals are known to be powerful inhibitors of xenobiotics biodegradation activities. Alleviation the inhibitory effect of these metals on the phenol biodegradation activities in presence of heavy metals resistant plasmid was investigated. Approach: Combination of genetic systems of degradation of xenobiotic compound and heavy metal resistance was one of the approaches to the creation of polyfunctional strains for bioremediation of soil after co-contamination with organic pollutants and heavy metals. Results: A bacterial strain Pseudomonas putida PhCN (pPhCN1, pPhCN2 had been obtained. This bacterium contained two plasmids, a 120 Kb catabolic plasmid that encode for breakdown of phenol (pPhCN1 and pPhCN2 plasmid (100 Kb that code for cadmium and copper resistant. Cyanide assimilation by this bacterium was encoded by chromosomal genes. The inhibitory effect of cadmium (Cd2+ or copper (Cu2+ on the degradation of phenol and cyanide by P. putida strains PhCN and PhCN1 (contained pPhCN1 were investigated. The resistant strain PhCN showed high ability to degrade phenol and cyanide in presence of Cd2+ or Cu2+ comparing with the sensitive strain PhCN1. In addition, Cd2+ or Cu2+ was also found to exert a strong inhibitory effect on the C23O dioxygenase enzyme activity in the presence of cyanide as a nitrogen source. Conclusion: The presence of heavy metal resistance plasmid alleviated the inhibitory effect of metals on the phenol and cyanide assimilation by resistant strain.

  6. Degradation Action of the Anaerobic Bacteria and Oxygen to the Polymer

    Institute of Scientific and Technical Information of China (English)

    LU Xiang-Guo; ZHANG Ke

    2008-01-01

    Oxygen could prohibit anaerobic bacterium in the produced water and degrade the polymer molecular chains.Aiming at problems making up aerobic polymer solution by the produced water in Daqing Oil Field, some evaluations were done on the viscosity characteristics of polymer solution and bactericide in anaerobic and aerobic environments. Reasonable aerobic concentration of the produced water was obtained. The experimental results indicate that the viscosity of polymer solution confected by the produced water in the aerobic environment is higher than that of the polymer solution confected by the produced water in the anaerobic environment, and the reasonable ments, but the sterilization effect is better in the aerobic environment.

  7. Degradation of reactive dyes by ozonation and oxalic acid-assimilating bacteria isolated from soil.

    Science.gov (United States)

    Kurosumi, Akihiro; Kaneko, Erika; Nakamura, Yoshitoshi

    2008-07-01

    Ozonation and treatment of wastewaters with oxalic acid-assimilating bacterium was attempted for the complete degradation of reactive dyes. Oxalic acid-assimilating bacterium, Pandoraea sp. strain EBR-01, was newly isolated from soil under bamboo grove and was identified to be a member of the genus Pandoraea by physicochemical and biochemical tests including 16S rDNA sequence analysis. The bacterium was grown optimally at pH 7 and temperature of 30 degrees C under the laboratory conditions. Reactive Red 120 (RR120), Reactive Green 19 (RG19), Reactive Black 5 (RB5) and Remazol Brilliant Blue R (RBBR) were used in degradation experiments. At the initial reactive dye concentrations of 500 mg/l and the ozonation time of 80 min, it was confirmed that 75-90 mg/l oxalic acid was generated from reactive dyes by ozonation. Microbial treatment using EBR-01 greatly decreased the amount of oxalic acid in the mixture after 48 h, but it was not removed completely. TOC/TOC(0) of reactive dye solutions was also decreased to 80-90% and 20-40% by ozonation and microbial treatment using EBR-01, respectively. The study confirmed that consecutive treatments by ozone and microorganisms are efficient methods to mineralize reactive dyes.

  8. Isolation and survey of novel fluoroacetate-degrading bacteria belonging to the phylum Synergistetes.

    Science.gov (United States)

    Davis, Carl K; Webb, Richard I; Sly, Lindsay I; Denman, Stuart E; McSweeney, Chris S

    2012-06-01

    Microbial dehalogenation of chlorinated compounds in anaerobic environments is well known, but the degradation of fluorinated compounds under similar conditions has rarely been described. Here, we report on the isolation of a bovine rumen bacterium that metabolizes fluoroacetate under anaerobic conditions, the mode of degradation and its presence in gut ecosystems. The bacterium was identified using 16S rRNA gene sequence analysis as belonging to the phylum Synergistetes and was designated strain MFA1. Growth was stimulated by amino acids with greater quantities of amino acids metabolized in the presence of fluoroacetate, but sugars were not fermented. Acetate, formate, propionate, isobutryate, isovalerate, ornithine and H(2) were end products of amino acid metabolism. Acetate was the primary end product of fluoroacetate dehalogenation, and the amount produced correlated with the stoichiometric release of fluoride which was confirmed using fluorine nuclear magnetic resonance ((19) F NMR) spectroscopy. Hydrogen and formate produced in situ were consumed during dehalogenation. The growth characteristics of strain MFA1 indicated that the bacterium may gain energy via reductive dehalogenation. This is the first study to identify a bacterium that can anaerobically dehalogenate fluoroacetate. Nested 16S rRNA gene-specific PCR assays detected the bacterium at low numbers in the gut of several herbivore species.

  9. High-throughput pyrosequencing analysis of bacteria relevant to cometabolic and metabolic degradation of ibuprofen in horizontal subsurface flow constructed wetlands.

    Science.gov (United States)

    Li, Yifei; Wu, Bing; Zhu, Guibing; Liu, Yu; Ng, Wun Jern; Appan, Adhityan; Tan, Soon Keat

    2016-08-15

    The potential toxicity of pharmaceutical residues including ibuprofen on the aquatic vertebrates and invertebrates has attracted growing attention to the pharmaceutical pollution control using constructed wetlands, but there lacks of an insight into the relevant microbial degradation mechanisms. This study investigated the bacteria associated with the cometabolic and metabolic degradation of ibuprofen in a horizontal subsurface flow constructed wetland system by high-throughput pyrosequencing analysis. The ibuprofen degradation dynamics, bacterial diversity and evenness, and bacterial community structure in a planted bed with Typha angustifolia and an unplanted bed (control) were compared. The results showed that the plants promoted the microbial degradation of ibuprofen, especially at the downstream zones of wetland. However, at the upstream one-third zone of wetland, the presence of plants did not significantly enhance ibuprofen degradation, probably due to the much greater contribution of cometabolic behaviors of certain non-ibuprofen-degrading microorganisms than that of the plants. By analyzing bacterial characteristics, we found that: (1) The aerobic species of family Flavobacteriaceae, family Methylococcaceae and genus Methylocystis, and the anaerobic species of family Spirochaetaceae and genus Clostridium_sensu_stricto were the most possible bacteria relevant to the cometabolic degradation of ibuprofen; (2) The family Rhodocyclaceae and the genus Ignavibacterium closely related to the plants appeared to be associated with the metabolic degradation of ibuprofen.

  10. Enzymes for Degradation of Energetic Materials and Demilitarization of Explosives Stockpiles - SERDP Annual (Interim) Report, 12/98

    Energy Technology Data Exchange (ETDEWEB)

    Shah, M.M.

    1999-01-18

    The current stockpile of energetic materials requiring disposal contains about half a million tons. Through 2001, over 2.1 million tons are expected to pass through the stockpile for disposal. Safe and environmentally acceptable methods for disposing of these materials are needed. This project is developing safe, economical, and environmentally sound processes using biocatalyst (enzymes) to degrade energetic materials and to convert them into economically valuable products. Alternative methods for destroying these materials are hazardous, environmentally unacceptable, and expensive. These methods include burning, detonation, land and sea burial, treatment at high temperature and pressure, and treatment with harsh chemicals. Enzyme treatment operates at room temperature and atmospheric pressure in a water solution.

  11. Co-metabolic formation of substituted phenylacetic acids by styrene-degrading bacteria

    Directory of Open Access Journals (Sweden)

    Michel Oelschlägel

    2015-06-01

    The styrene-degrading strains Rhodococcus opacus 1CP, Pseudomonas fluorescens ST, and the novel isolates Sphingopyxis sp. Kp5.2 and Gordonia sp. CWB2 were investigated with respect to their applicability to co-metabolically produce substituted phenylacetic acids. Isolates were found to differ significantly in substrate tolerance and biotransformation yields. Especially, P. fluorescens ST was identified as a promising candidate for the production of several phenylacetic acids. The biotransformation of 4-chlorostyrene with cells of strain ST was shown to be stable over a period of more than 200 days and yielded about 38 mmolproduct gcelldryweight−1 after nearly 350 days. Moreover, 4-chloro-α-methylstyrene was predominantly converted to the (S-enantiomer of the acid with 40% enantiomeric excess.

  12. Multiple DNA extractions coupled with stable-isotope probing of anthracene-degrading bacteria in contaminated soil.

    Science.gov (United States)

    Jones, Maiysha D; Singleton, David R; Sun, Wei; Aitken, Michael D

    2011-05-01

    In many of the DNA-based stable-isotope probing (SIP) studies published to date in which soil communities were investigated, a single DNA extraction was performed on the soil sample, usually using a commercial DNA extraction kit, prior to recovering the (13)C-labeled (heavy) DNA by density-gradient ultracentrifugation. Recent evidence suggests, however, that a single extraction of a soil sample may not lead to representative recovery of DNA from all of the organisms in the sample. To determine whether multiple DNA extractions would affect the DNA yield, the eubacterial 16S rRNA gene copy number, or the identification of anthracene-degrading bacteria, we performed seven successive DNA extractions on the same aliquot of contaminated soil either untreated or enriched with [U-(13)C]anthracene. Multiple extractions were necessary to maximize the DNA yield and 16S rRNA gene copy number from both untreated and anthracene-enriched soil samples. Sequences within the order Sphingomonadales, but unrelated to any previously described genus, dominated the 16S rRNA gene clone libraries derived from (13)C-enriched DNA and were designated "anthracene group 1." Sequences clustering with Variovorax spp., which were also highly represented, and sequences related to the genus Pigmentiphaga were newly associated with anthracene degradation. The bacterial groups collectively identified across all seven extracts were all recovered in the first extract, although quantitative PCR analysis of SIP-identified groups revealed quantitative differences in extraction patterns. These results suggest that performing multiple DNA extractions on soil samples improves the extractable DNA yield and the number of quantifiable eubacterial 16S rRNA gene copies but have little qualitative effect on the identification of the bacterial groups associated with the degradation of a given carbon source by SIP.

  13. Sterilization of Exopolysaccharides Produced by Deep-Sea Bacteria: Impact on Their Stability and Degradation

    Directory of Open Access Journals (Sweden)

    Sylvia Colliec-Jouault

    2011-02-01

    Full Text Available Polysaccharides are highly heat-sensitive macromolecules, so high temperature treatments are greatly destructive and cause considerable damage, such as a great decrease in both viscosity and molecular weight of the polymer. The technical feasibility of the production of exopolysaccharides by deep-sea bacteria Vibrio diabolicus and Alteromonas infernus was previously demonstrated using a bioproduct manufacturing process. The objective of this study was to determine which sterilization method, other than heat sterilization, was the most appropriate for these marine exopolysaccharides and was in accordance with bioprocess engineering requirements. Chemical sterilization using low-temperature ethylene oxide and a mixture of ionized gases (plasmas was compared to the sterilization methods using gamma and beta radiations. The changes to both the physical and chemical properties of the sterilized exopolysaccharides were analyzed. The use of ethylene oxide can be recommended for the sterilization of polysaccharides as a weak effect on both rheological and structural properties was observed. This low-temperature gas sterilizing process is very efficient, giving a good Sterility Assurance Level (SAL, and is also well suited to large-scale compound manufacturing in the pharmaceutical industry.

  14. Characteristics of developed granules containing selected decolourising bacteria for the degradation of textile wastewater.

    Science.gov (United States)

    Ibrahim, Z; Amin, M F M; Yahya, A; Aris, A; Muda, K

    2010-01-01

    Textile wastewater, one of the most polluted industrial effluents, generally contains substantial amount of dyes and chemicals that will cause increase in the COD, colour and toxicity of receiving water bodies if not properly treated. Current treatment methods include chemical and biological processes; the efficiency of the biological treatment method however, remains uncertain since the discharged effluent is still highly coloured. In this study, granules consisting mixed culture of decolourising bacteria were developed and the physical and morphological characteristics were determined. After the sixth week of development, the granules were 3-10 mm in diameter, having good settling property with settling velocity of 70 m/h, sludge volume index (SVI) of 90 to 130 mL/g, integrity coefficient of 3.7, and density of 66 g/l. Their abilities to treat sterilised raw textile wastewater were evaluated based on the removal efficiencies of COD (initial ranging from 200 to 3,000 mg/L), colour (initial ranging from 450 to 2000 ADMI) of sterilised raw textile wastewater with pH from 6.8 to 9.4. Using a sequential anaerobic-aerobic treatment cycle with hydraulic retention time (HRT) of 24 h, maximum removal of colour and COD achieved was 90% and 80%, respectively.

  15. Diversity of alkane degrading bacteria associated with plants in a petroleum oil-contaminated environment and expression of alkane monooxygenase (alkB) genes

    Science.gov (United States)

    Andria, V.; Yousaf, S.; Reichenauer, T. G.; Smalla, K.; Sessitsch, A.

    2009-04-01

    Among twenty-six different plant species, Italian ryegrass (Lolium multiflorum var. Taurus), Birdsfoot trefoil (Lotus corniculatus var. Leo), and the combination of both plants performed well in a petroleum oil contaminated soil. Hydrocarbon degrading bacteria were isolated from the rhizosphere, root interior and shoot interior and subjected to the analysis of 16S rRNA, the 16S and 23S rRNA intergenic spacer region and alkane hydroxylase genes. Higher numbers of culturable, degrading bacteria were associated with Italian ryegrass, which were also characterized by a higher diversity, particularly in the plant interior. Only half of the isolated bacteria hosted known alkane hydroxylase genes (alkB and cytochrome P153-like). Our results indicated that alkB genes have spread through horizontal gene transfer, particularly in the Italian ryegrass rhizosphere, and suggested mobility of catabolic genes between Gram-negative and Gram-positive bacteria. We furthermore studied the colonization behaviour of selected hydrocarbon-degrading strains (comprising an endopyhte and a rhizosphere strain) as well as the expression of their alkane monooxygenase genes in association with Italian ryegrass. Results showed that the endophyte strain better colonized the plant, particularly the plant interior, and also showed higher expression of alkB genes suggesting a more efficient degradation of the pollutant. Furthermore, plants inoculated with the endophyte were better able to grow in the presence of diesel. The rhizosphere strain colonized primarily the rhizosphere and showed low alkB gene expression in the plant interior.

  16. Photocatalytic degradation of methylene blue and inactivation of gram-negative bacteria by TiO2 nanoparticles in aqueous suspension

    Science.gov (United States)

    The photocatalytic degradation of methylene blue (MB) and inactivation of Gram-negative bacteria E. coli K12 and P. aeruginosa by TiO2 nanoparticles in aqueous suspension were studied. TiO2 resulted in significant reduction in MB absorption and a shift of MB absorption peak from 664 nm to 658 nm aft...

  17. Influence of forage phenolics on ruminal fibrolytic bacteria and in vitro fiber degradation.

    Science.gov (United States)

    Varel, V H; Jung, H J

    1986-08-01

    In vitro cultures of ruminal microorganisms were used to determine the effect of cinnamic acid and vanillin on the digestibility of cellulose and xylan. Cinnamic acid and vanillin depressed in vitro dry matter disappearance of cellulose 14 and 49%, respectively, when rumen fluid was the inoculum. The number of viable Bacteroides succinogenes cells, the predominant cellulolytic organism, was threefold higher for fermentations which contained vanillin than for control fermentations. When xylan replaced cellulose as the substrate, a 14% decrease in the digestibility of xylan was observed with vanillin added; however, the number of viable xylanolytic bacteria cultured from the batch fermentation was 10-fold greater than that of control fermentations. The doubling time of B. succinogenes was increased from 2.32 to 2.58 h when vanillin was added to cellobiose medium, and absorbance was one-half that of controls after 18 h. The growth rate of Ruminococcus albus and Ruminococcus flavefaciens was inhibited more by p-coumaric acid than by vanillin, although no reduction of final absorbance was observed in their growth cycles. Vanillin, and to a lesser extent cinnamic acid, appeared to prevent the attachment of B. succinogenes cells to cellulose particles, but did not affect dissociation of cells from the particles. B. succinogenes, R. albus, R. flavefaciens, and Butyrivibrio fibrisolvens all modified the parent monomers cinnamic acid, p-coumaric acid, ferulic acid, and vanillin, with B. fibrisolvens causing the most extensive modification. These results suggest that phenolic monomers can inhibit digestibility of cellulose and xylan, possibly by influencing attachment of the fibrolytic microorganisms to fiber particles. The reduced bacterial attachment to structural carbohydrates in the presence of vanillin may generate more free-floating fibrolytic organisms, thus giving a deceptively higher viable count.

  18. Isolation of Inositol Hexaphosphate (IHP)-Degrading Bacteria from Arbuscular Mycorrhizal Fungal Hyphal Compartments Using a Modified Baiting Method Involving Alginate Beads Containing IHP

    Science.gov (United States)

    Hara, Shintaro; Saito, Masanori

    2016-01-01

    Phytate (inositol hexaphosphate; IHP)-degrading microbes have been suggested to contribute to arbuscular mycorrhizal fungi (AMF)-mediated P transfer from IHP to plants; however, no IHP degrader involved in AMF-mediated P transfer has been isolated to date. We herein report the isolation of IHP-degrading bacteria using a modified baiting method. We applied alginate beads as carriers of IHP powder, and used them as recoverable IHP in the AM fungal compartment of plant cultivation experiments. P transfer from IHP in alginate beads via AMF was confirmed, and extracted DNA from alginate beads was analyzed by denaturing gradient gel electrophoresis targeting the 16S rRNA gene and a clone library method for the beta-propeller phytase (BPP) gene. The diversities of the 16S rRNA and BPP genes of microbes growing on IHP beads were simple and those of Sphingomonas spp. and Caulobacter spp. dominated. A total of 187 IHP-utilizing bacteria were isolated and identified, and they were consistent with the results of DNA analysis. Furthermore, some isolated Sphingomonas spp. and Caulobacter sp. showed IHP-degrading activity. Therefore, we successfully isolated dominant IHP-degrading bacteria from IHP in an AMF hyphal compartment. These strains may contribute to P transfer from IHP via AMF. PMID:27383681

  19. Xylan utilization in human gut commensal bacteria is orchestrated by unique modular organization of polysaccharide-degrading enzymes

    KAUST Repository

    Zhang, Meiling

    2014-08-18

    Enzymes that degrade dietary and host-derived glycans represent the most abundant functional activities encoded by genes unique to the human gut microbiome. However, the biochemical activities of a vast majority of the glycan-degrading enzymes are poorly understood. Here, we use transcriptome sequencing to understand the diversity of genes expressed by the human gut bacteria Bacteroides intestinalis and Bacteroides ovatus grown in monoculture with the abundant dietary polysaccharide xylan. The most highly induced carbohydrate active genes encode a unique glycoside hydrolase (GH) family 10 endoxylanase (BiXyn10A or BACINT-04215 and BACOVA-04390) that is highly conserved in the Bacteroidetes xylan utilization system. The BiXyn10A modular architecture consists of a GH10 catalytic module disrupted by a 250 amino acid sequence of unknown function. Biochemical analysis of BiXyn10A demonstrated that such insertion sequences encode a new family of carbohydrate-binding modules (CBMs) that binds to xy-lose- configured oligosaccharide/polysaccharide ligands, the substrate of the BiXyn10A enzymatic activity. The crystal structures of CBM1 from BiXyn10A (1.8 Å), a cocomplex of BiXyn10A CBM1 with xylohexaose (1.14 Å), and the CBM fromits homolog in the Prevotella bryantii B 14 Xyn10C (1.68 Å) reveal an unanticipated mode for ligand binding. Aminimal enzyme mix, composed of the gene products of four of the most highly up-regulated genes during growth on wheat arabinoxylan, depolymerizes the polysaccharide into its component sugars. The combined biochemical and biophysical studies presented here provide a framework for understanding fiber metabolism by an important group within the commensal bacterial population known to influence human health.

  20. A survey of deepwater horizon (DWH) oil-degrading bacteria from the Eastern oyster biome and its surrounding environment.

    Science.gov (United States)

    Thomas, Jesse C; Wafula, Denis; Chauhan, Ashvini; Green, Stefan J; Gragg, Richard; Jagoe, Charles

    2014-01-01

    The deepwater horizon (DWH) accident led to the release of an estimated 794,936,474 L of crude oil into the northern Gulf of Mexico over an 85 day period in 2010, resulting in the contamination of the Gulf of Mexico waters, sediments, permeable beach sands, coastal wetlands, and marine life. This study examines the potential response of the Eastern oyster's microbiome to hydrocarbon contamination and compares it with the bacterial community responses observed from the overlaying water column (WC) and the oyster bed sediments. For this purpose, microcosms seeded with DWH crude oil were established and inoculated separately with oyster tissue (OT), mantle fluid (MF), overlaying WC, and sediments (S) collected from Apalachicola Bay, FL, USA. Shifts in the microbial community structure in the amended microcosms was monitored over a 3-month period using automated ribosomal intergenic spacer region analysis, which showed that the microbiome of the OT and MF were more similar to the sediment communities than those present in the overlaying WC. This pattern remained largely consistent, regardless of the concentration of crude oil or the enrichment period. Additionally, 72 oil-degrading bacteria were isolated from the microcosms containing OT, MF, WC, and S and identified using 16S ribosomal RNA gene sequencing and compared by principal component analysis, which clearly showed that the WC isolates were different to those identified from the sediment. Conversely, the OT and MF isolates clustered together; a strong indication that the oyster microbiome is uniquely structured relative to its surrounding environment. When selected isolates from the OT, MF, WC, and S were assessed for their oil-degrading potential, we found that the DWH oil was biodegraded between 12 and 42%, under the existing conditions.

  1. A Survey of Deepwater Horizon (DWH Oil-Degrading Bacteria from the Eastern Oyster Biome and its Surrounding Environment

    Directory of Open Access Journals (Sweden)

    Jesse eThomas

    2014-04-01

    Full Text Available The Deepwater Horizon (DWH accident led to the release of an estimated 794,936,474 liters of crude oil into the northern Gulf of Mexico over an 85 day period in 2010, resulting in the contamination of the Gulf of Mexico waters, sediments, permeable beach sands, coastal wetlands and marine life. This study examines the potential response of the Eastern oyster’s microbiome to hydrocarbon contamination and compares it with the bacterial community responses observed from the overlaying water column and the oyster bed sediments. For this purpose, microcosms seeded with DWH crude oil were established and inoculated separately with oyster tissue (OT, mantle fluid (MF, overlaying water column (WC and sediments (S collected from Apalachicola Bay, FL. Shifts in the microbial community structure in the amended microcosms was monitored over a 3-month period using automated ribosomal intergenic spacer region analysis (ARISA, which showed that the microbiome of the oyster tissue and mantle fluid were more similar to the sediment communities than those present in the overlaying water column. This pattern remained largely consistent, regardless of the concentration of crude oil or the enrichment period. Additionally, 72 oil-degrading bacteria were isolated from the microcosms containing OT, MF, WC and S and identified using 16S ribosomal RNA (rRNA gene sequencing and compared by principal component analysis (PCA which clearly showed that the water column isolates were different to those identified from the sediment. Conversely, the oyster tissue and mantle fluid isolates clustered together; a strong indication that the oyster microbiome is uniquely structured relative to its surrounding environment. When selected isolates from the OT, MF, WC and S were assessed for their oil-degrading potential, we found that the DWH oil was biodegraded between 12%-42%, under the existing conditions.

  2. Microbial oil-degradation under mild hydrostatic pressure (10 MPa): which pathways are impacted in piezosensitive hydrocarbonoclastic bacteria?

    KAUST Repository

    Scoma, Alberto

    2016-03-29

    Oil spills represent an overwhelming carbon input to the marine environment that immediately impacts the sea surface ecosystem. Microbial communities degrading the oil fraction that eventually sinks to the seafloor must also deal with hydrostatic pressure, which linearly increases with depth. Piezosensitive hydrocarbonoclastic bacteria are ideal candidates to elucidate impaired pathways following oil spills at low depth. In the present paper, we tested two strains of the ubiquitous Alcanivorax genus, namely A. jadensis KS_339 and A. dieselolei KS_293, which is known to rapidly grow after oil spills. Strains were subjected to atmospheric and mild pressure (0.1, 5 and 10 MPa, corresponding to a depth of 0, 500 and 1000 m, respectively) providing n-dodecane as sole carbon source. Pressures equal to 5 and 10 MPa significantly lowered growth yields of both strains. However, in strain KS_293 grown at 10 MPa CO2 production per cell was not affected, cell integrity was preserved and PO43− uptake increased. Analysis of its transcriptome revealed that 95% of its genes were downregulated. Increased transcription involved protein synthesis, energy generation and respiration pathways. Interplay between these factors may play a key role in shaping the structure of microbial communities developed after oil spills at low depth and limit their bioremediation potential.

  3. Microbial oil-degradation under mild hydrostatic pressure (10 MPa): which pathways are impacted in piezosensitive hydrocarbonoclastic bacteria?

    Science.gov (United States)

    Scoma, Alberto; Barbato, Marta; Hernandez-Sanabria, Emma; Mapelli, Francesca; Daffonchio, Daniele; Borin, Sara; Boon, Nico

    2016-03-01

    Oil spills represent an overwhelming carbon input to the marine environment that immediately impacts the sea surface ecosystem. Microbial communities degrading the oil fraction that eventually sinks to the seafloor must also deal with hydrostatic pressure, which linearly increases with depth. Piezosensitive hydrocarbonoclastic bacteria are ideal candidates to elucidate impaired pathways following oil spills at low depth. In the present paper, we tested two strains of the ubiquitous Alcanivorax genus, namely A. jadensis KS_339 and A. dieselolei KS_293, which is known to rapidly grow after oil spills. Strains were subjected to atmospheric and mild pressure (0.1, 5 and 10 MPa, corresponding to a depth of 0, 500 and 1000 m, respectively) providing n-dodecane as sole carbon source. Pressures equal to 5 and 10 MPa significantly lowered growth yields of both strains. However, in strain KS_293 grown at 10 MPa CO2 production per cell was not affected, cell integrity was preserved and PO43- uptake increased. Analysis of its transcriptome revealed that 95% of its genes were downregulated. Increased transcription involved protein synthesis, energy generation and respiration pathways. Interplay between these factors may play a key role in shaping the structure of microbial communities developed after oil spills at low depth and limit their bioremediation potential.

  4. Fate of invading bacteria in soil and survival of transformants after simulated uptake of transgenes, as evaluated by a model system based on lindane degradation.

    Science.gov (United States)

    Zhang, Xiaojun; Nesme, Joseph; Simonet, Pascal; Frostegård, Asa

    2012-04-01

    Emergence of bacteria carrying new traits resulting from mutations, gene synthesis by gene-shuffling or acquisition of exogenous DNA underpins the need to better understand factors influencing their spread and establishment. Studies of soils may be difficult, since the gene of interest is often already present in high numbers. The gene linA, responsible for the first dechlorination steps during degradation of lindane (γ-hexachlorocyclohexane), has low background levels in soil and is simple to detect. Development of transgenic plants containing linA and newly proposed approaches to bioremediation by in situ electrotransformation after addition of a vector carrying this gene call for documentation on the fate of bacteria that incorporate it. We inserted linA into the broad-host-range conjugative RP4-plasmid and transferred it to different soil bacteria which were inoculated into soil microcosms in the presence/absence of lindane. Similar experiments were performed using Sphingobium francense Sp+, which carries all genes for complete lindane degradation. This strain increased in numbers during lindane mineralization, but other bacteria increased more, resulting in a modified bacterial community structure. The engineered strains decreased below the detection limit, but rose in numbers after nutrient addition, demonstrating that new invading bacteria may persist in soil in the form of small populations over extended time periods.

  5. Degradative capacities of bacteria and fungi isolated from a fuel-contaminated soil. Capacites degradatives de bacteries et de champignons isoles d'un sol contamine par un fuel

    Energy Technology Data Exchange (ETDEWEB)

    Oudot, J.; Fusey, P.; Abdelouahid, D.E.; Haloui, S.; Roquebert, M.F. (Museum national d' histoire naturelle, Cedex (France))

    1987-01-01

    The long-term influence of a fuel spill on the bacterial and fungal communities of an agricultural soil was studied. Three years after the contamination, biodegradation of the fuel in the soil was achieved and after 5 years the residual compounds had no significant effect on the density and the specific composition of the microbial populations of the soil. Hydrocarbon-oxidizing bacteria Corynebacterium and Nocardia spp. were isolated. Most of the active fungi were Aspergillus and Penicillium spp., but strains of Paecilomyces, Acremonium, Fusarium, and Gliocladium were also identified. In laboratory experiments, the biodegration rate of a reference crude oil by pure cultures of oil-degrading strains was nearly the same as in mixed cultures. The biodegradation potential of the strains isolated from the control plot was as high as strains isolated from the oiled plot. In the soil, as in laboratory cultures, the saturate hydrocarbons were more degraded than the aromatics, whereas the resins and asphaltenes were resistant to microbial attack, as were polycyclic alkanes, steranes and triterpanes. Nocardia degraded preferentially the aromatics and attacked significantly the asphaltenes, as did Fusarium oxysporum. Aspergillus niger, Aspergillus flavus, and Fusarium oxysporum degraded part of the resins. The spectrum of the initial degradation of petroleum by the most active fungi and bacteria was identical, and it appears that the enzymatic equipment necessary to oxidize hydrocarbons is quite complete in these strains. 21 refs., 9 figs., 5 tabs.

  6. Exploring the Role of Nanoscale Zero Valent Iron and Bacteria on the Degradation of a Multi-component Chlorinated Solvent at the Field Scale

    Science.gov (United States)

    Kocur, C. M.; Lomheim, L.; Boparai, H.; Chowdhury, A. I.; Weber, K.; Austrins, L. M.; Sleep, B. E.; Edwards, E.; O'Carroll, D. M.

    2013-12-01

    Nanoscale zero valent iron (nZVI) has advanced as a technology for the remediation of priority source zone contaminants in response to early laboratory studies that showed rapid rates of compound degradation. The challenges associated with the delivery of nZVI particles (eg. rapid aggregation and settling) were partially resolved with the addition of a polyelectrolyte polymers, like Carboxymethyl cellulose, that significantly improves the colloidal stability of particles allowing for more controlled injection and transport in the subsurface. Following nZVI application and abiotic contaminant degradation nZVI oxidizes and yields reducing conditions. These reducing conditions are ideal for many dechlorinating bacteria. Given this, application of nZVI for abiotic contaminant degradation followed by bioremediation has become an area of active research interest. In this study nZVI was injected into a contaminated sandy subsurface area. Concentrations of a range of chlorinated compounds, including chlorinated ethenes, ethanes, and methanes were monitored in detail following nano-particle injection in order to access short term abiotic degradation. Monitoring continued over a 2 year period to evaluate the long term effects of nZVI injection on the bacterial communities and the biotic degradation of targeted chlorinated compounds. The study focusses on the degradation and evolution of intermediate compounds from reaction with targeted contaminant compounds along the nZVI flow path. Bacterial populations were quantified before injection to confirm that beneficial chloride reducing bacteria were present on site. The microbiological response to the injection of nZVI was studied and the performance of bacteria along the nZVI flow path and outside the nZVI affected area will be compared.

  7. MALDI-TOF MS analysis of ribosomal proteins coded in S10 and spc operons rapidly classified the Sphingomonadaceae as alkylphenol polyethoxylate-degrading bacteria from the environment.

    Science.gov (United States)

    Hotta, Yudai; Sato, Hiroaki; Hosoda, Akifumi; Tamura, Hiroto

    2012-05-01

    Matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) using ribosomal subunit proteins coded in the S10-spc-alpha operon as biomarkers was applied for the classification of the Sphingomonadaceae from the environment. To construct a ribosomal protein database, S10-spc-alpha operon of type strains of the Sphingomonadaceae and their related alkylphenol polyethoxylate (APEO(n) )-degrading bacteria were sequenced using specific primers designed based on nucleotide sequences of genome-sequenced strains. The observed MALDI mass spectra of intact cells were compared with the theoretical mass of the constructed ribosomal protein database. The nine selected biomarkers coded in the S10-spc-alpha operon, L18, L22, L24, L29, L30, S08, S14, S17, and S19, could successfully distinguish the Sphingopyxis terrae NBRC 15098(T) and APEO(n) -degrading bacteria strain BSN20, despite only one base difference in the 16S rRNA gene sequence. This method, named the S10-GERMS (S10-spc-alpha operon gene-encoded ribosomal protein mass spectrum) method, is a significantly useful tool for bacterial discrimination of the Sphingomonadaceae at the strain level and can detect and monitor the main APEO(n) -degrading bacteria in the environment.

  8. 一株纤维素降解菌的筛选与鉴定%Screening and Identification of Cellulose Degradation Bacteria

    Institute of Scientific and Technical Information of China (English)

    李艳红

    2012-01-01

    12 cellulose-degrading bacterias were enriched and isolated from the leaves of the humus layer covering the soil and a high-degrading bacteria ( X10 ) was selected from these. The optimal culture conditions of the bacteria were as follows : took the culture medium containing glucose+micrlte cellulose (1:1)as carbon sources, peptone+beef( 1:1 )as nitrogen sources, pH 7.5, under 30℃, with the culture time was 40 b, the cellulose-degrading enzyme activity was up to 57.44 U.Through its 16s rRNA sequencing,the homology of bacteria and Microbacterium oxydans were 99%.The selection of cellulose-degrading bacteria provided a new source of bacteria for the egiciem production of cellulase.%从落叶覆盖的腐殖层土壤中富集、分离得到12株纤维素降解菌,从中筛选出一株高效降解菌(X10),研究其最适宜的培养条件为:配制以葡萄糖+微晶纤维隶(1:1)为碳源、以蛋白胨+牛肉膏(1:1)为氮源的培养基,pH值7.5,30℃下培养40h,测得纤维素降解酶酶活可达到67.44U。通过对其16srRNA测序鉴定,该菌与氧化微杆菌(Microbacterium oxydans)有99%的同源性。纤维素降解菌的选育可为高效生产纤维素酶提供新的菌种来源。

  9. 南极石油烃降解嗜冷菌的筛选及其降解特性的研究%Antarctic Psychrophile Bacteria Screening for Oil Degradation and Their Degrading Characteristics

    Institute of Scientific and Technical Information of China (English)

    郑洲; 金青; 缪锦来; 刘芳明

    2008-01-01

    从 385 株南极海洋细菌中筛选出 2 株石油烃降解菌,并对其降解特性进行了初步研究.以柴油为唯一碳源进行降解实验的结果表明,南极嗜冷菌 NJ276 和 NJ341 在 5 °C、20 d 内对柴油的降解率分别达到 23.47 % 和32.15 %,在 15 °C、20 d 内降解率分别达到 43.95 % 和 62.47 %,其降解能力随着培养温度的升高而显著增强;石油烃降解残油组分的GC~MS分析表明,柴油经过 NJ276 降解后的残油组分中能检测到 C15~C21 七种烷烃,柴油经过 NJ341 降解后的残油组分只能检测到少量 C16,C17 和 C18 三种烷烃.对它们进行 16S rDNA 基因序列的同源性和系统发育分析表明,菌株 NJ276 属于假交替单胞菌属( Pseudoalteromonas),NJ341 属于科尔韦尔氏属(Colwellia).%Two hydrocarbon degrading bacteria NJ276 and NJ341 were screened from 385 Antarctic marine bacteria and their degrading characteristics were studied.Diesel oil as sole carbon source was used in this study.The results showed that the oil degradation rates of Antarctic psychrophile bacteria NJ276 and NJ341 were 23.47 % and 32.15 %,respectively,after 20 days culturation at 5 °C,and the rates were 43.95 % and 62.47 % respectively after 20 days culturation at 15 °C.The oil degradation abilities were enhanced remarkably with the increasing culture temperature.GC-MSs indicated the residual oil contained C15-C21 7 alkyls after degradation by NJ276,and C16,C17 and C18 3 alkyls after degradation by NJ341.The 16S rDNA gene sequences homology and phylogenetic analysis of the two Antarctic psychrophile bacteria showed that NJ276 belonged to the described genus Pseudoalteromonas and NJ341 belonged to the genus Colwellia.

  10. Bioremediation of coastal areas 5 years after the Nakhodka oil spill in the Sea of Japan: isolation and characterization of hydrocarbon-degrading bacteria.

    Science.gov (United States)

    Chaerun, S Khodijah; Tazaki, Kazue; Asada, Ryuji; Kogure, Kazuhiro

    2004-09-01

    Five years after the 1997 Nakhodka oil spill in the Sea of Japan, seven bacterial strains capable of utilizing the heavy oil spilled from the Nakhodka Russian oil tanker were isolated from three coastal areas (namely Katano Seashore of Fukui Prefecture, Osawa and Atake seashores of Ishikawa Prefecture) and the Nakhodka Russian oil tanker after a 5-year bioremediation process. All bacterial strains isolated could utilize long-chain-length alkanes efficiently, but not aromatic, and all of them were able to grow well on heavy oil. Using 16S rDNA sequencing, most of the strains were affiliated to Pseudomonas aeruginosa. Comparing between the year 1997 (at the beginning of bioremediation process) and the year 2001 (after 5 years of bioremediation), there was no significant change in morphology and size of hydrocarbon-degrading bacteria during the 5-year bioremediation. Scanning and transmission electron microscopic observations revealed that a large number of hydrocarbon-degrading bacteria still existed in the sites consisting of a variety of morphological forms of bacteria, such as coccus (Streptococcus and Staphylococcus) and bacillus (Streptobacillus). On the application of bioremediation processes on the laboratory-scale, laboratory microcosm experiments (containing seawater, beach sand, and heavy oil) under aerobic condition by two different treatments (i.e., placed the inside building and the outside building) were established for bioremediation of heavy oil to investigate the significance of the role of hydrocarbon-degrading bacteria on them. There was no significant bacterial activity differentiation in the two treatments, and removal of heavy oil by hydrocarbon-degrading bacteria in the outside building was slightly greater than that in the inside building. The values of pH, Eh, EC, and dissolved oxygen (DO) in two treatments indicated that the bioremediation process took place under aerobic conditions (DO: 1-6 mg/l; Eh: 12-300 mV) and neutral

  11. Bioremediation of coastal areas 5 years after the Nakhodka oil spill in the Sea of Japan: isolation and characterization of hydrocarbon-degrading bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Chaerun, S. Khodijah [Kanazawa Univ., Graduate School of Natural Science and Technology, Kanazawa (Japan); Tazaki, Kazue; Asada, Ryuji [Kanazawa Univ., Dept. of Earth Sciences, Kanazawa (Japan); Kogure, Kazuhiro [Tokyo Univ., Ocean Research Inst., Nakano, Tokyo (Japan)

    2004-09-01

    Five years after the 1997 Nakhodka oil spill in the Sea of Japan, seven bacterial strains capable of utilizing the heavy oil spilled from the Nakhodka Russian oil tanker were isolated from three coastal areas (namely Katano Seashore of Fukui Prefecture, Osawa and Atake seashores of Ishikawa Prefecture) and the Nakhodka Russian oil tanker after a 5-year bioremediation process. All bacterial strains isolated could utilize long-chain-length alkanes efficiently, but not aromatic, and all of them were able to grow well on heavy oil. Using 16S rDNA sequencing, most of the strains were affiliated to Pseudomonas aeruginosa. Comparing between the year 1997 (at the beginning of bioremediation process) and the year 2001 (after 5 years of bioremediation), there was no significant change in morphology and size of hydrocarbon-degrading bacteria during the 5-year bioremediation. Scanning and transmission electron microscopic observations revealed that a large number of hydrocarbon- degrading bacteria still existed in the sites consisting of a variety of morphological forms of bacteria, such as coccus (Streptococcus and Staphylococcus) and bacillus (Streptobacillus). On the application of bioremediation processes on the laboratory-scale, laboratory microcosm experiments (containing seawater, beach sand, and heavy oil) under aerobic condition by two different treatments (i.e., placed inside the building and outside the building) were established for bioremediation of heavy oil to investigate the significance of the role of hydrocarbon-degrading bacteria on them. There was no significant bacterial activity differentiation in the two treatments, and removal of heavy oil by hydrocarbon degrading bacteria in the outside building was slightly greater than that in the inside building. The values of pH, Eh, EC, and dissolved oxygen (DO) in two treatments indicated that the bioremediation process took place under aerobic conditions (DO: 1-6 mg/l; Eh: 12-300 mV) and neutral

  12. Hydrocarbon-Degrading Bacteria and Paraffin from Polluted Seashores 9 Years after the Nakhodka Oil Spill in the Sea of Japan

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Pollution of petroleum hydrocarbons, in particular oil spills, has attracted much attention in the past and recent decades. Oil spills influence natural microbial community, and physical and chemical properties of the affected sites. The biodegradation of hydrocarbons by microorganisms is one of the primary ways by which oil spill is eliminated from contaminated sites. One such spill was that of the Russian tanker the Nakhodka that spilled heavy oil into the Sea of Japan on January 2, 1997. The impact of the Nakhodka oil spill resulted in a viscous sticky fluid fouling the shores and affected natural ecosystems. This paper describes the weathering of hydrocarbon-degrading bacteria (genus Pseudomonas) and crystallized organic compounds from the Nakhodka oil spill-polluted seashores after nine years. The Nakhodka oil has hardened and formed crust of crystalline paraffin wax as shown by XRD analysis (0.422, 0.377, and 0.250 nm d-spacing) in association with graphite and calcite after 9years of bioremediation. Anaerobic reverse side of the oil crust contained numerous coccus typed bacteria associated with halite. The finding of hydrocarbon-degrading bacteria and paraffin wax in the oil crust may have a significant effect on the weathering processes of the Nakhodka oil spill during the 9-year bioremediation.

  13. Cr-resistant rhizo- and endophytic bacteria associated with Prosopis juliflora and their potential as phytoremediation enhancing agents in metal-degraded soils

    Directory of Open Access Journals (Sweden)

    Muhammad Umar Khan

    2015-01-01

    Full Text Available Prosopis juliflora is characterized by distinct and profuse growth even in nutritionally poor soil and environmentally stressed conditions and is believed to harbor some novel heavy metal-resistant bacteria in the rhizosphere and endosphere. This study was performed to isolate and characterize Cr-resistant bacteria from the rhizosphere and endosphere of P. juliflora growing on the tannery effluent contaminated soil. A total of 5 and 21 bacterial strains were isolated from the rhizosphere and endosphere, respectively, could tolerate Cr up to 3000 mg l-1. These isolates also exhibited tolerance to other toxic heavy metals such as, Cd, Cu, Pb and Zn, and high concentration (174 g l-1 of NaCl. Moreover, most of the isolated bacterial strains showed one or more plant growth-promoting activities. The phylogenetic analysis of the 16S rRNA gene indicated a higher and wider range of population of Cr-resistant bacteria in the endosphere than rhizosphere and the predominant species included Bacillus, Staphylococcus and Aerococcus. As far as we know, this is the first report detecting rhizo- and endophytic bacterial population associated with P. juliflora growing on the tannery effluent contaminated soil. The inoculation of three isolates to ryegrass (Lolium multiflorum L. improved plant growth and heavy metal removal from the tannery effluent contaminated soil suggesting that these bacteria could enhance the establishment of the plant in contaminated soil and also improve the efficiency of phytoremediation of heavy metal-degraded soils.

  14. Restoration of Degraded Soil in the Nanmangalam Reserve Forest with Native Tree Species: Effect of Indigenous Plant Growth-Promoting Bacteria

    Directory of Open Access Journals (Sweden)

    Andimuthu Ramachandran

    2016-01-01

    Full Text Available Restoration of a highly degraded forest, which had lost its natural capacity for regeneration, was attempted in the Nanmangalam Reserve Forest in Eastern Ghats of India. In field experiment, 12 native tree species were planted. The restoration included inoculation with a consortium of 5 native plant growth-promoting bacteria (PGPB, with the addition of small amounts of compost and a chemical fertilizer (NPK. The experimental fields were maintained for 1080 days. The growth and biomass varied depending on the plant species. All native plants responded well to the supplementation with the native PGPB. The plants such as Pongamia pinnata, Tamarindus indica, Gmelina arborea, Wrightia tinctoria, Syzygium cumini, Albizia lebbeck, Terminalia bellirica, and Azadirachta indica performed well in the native soil. This study demonstrated, by using native trees and PGPB, a possibility to restore the degraded forest.

  15. Restoration of Degraded Soil in the Nanmangalam Reserve Forest with Native Tree Species: Effect of Indigenous Plant Growth-Promoting Bacteria

    Science.gov (United States)

    Ramachandran, Andimuthu; Radhapriya, Parthasarathy

    2016-01-01

    Restoration of a highly degraded forest, which had lost its natural capacity for regeneration, was attempted in the Nanmangalam Reserve Forest in Eastern Ghats of India. In field experiment, 12 native tree species were planted. The restoration included inoculation with a consortium of 5 native plant growth-promoting bacteria (PGPB), with the addition of small amounts of compost and a chemical fertilizer (NPK). The experimental fields were maintained for 1080 days. The growth and biomass varied depending on the plant species. All native plants responded well to the supplementation with the native PGPB. The plants such as Pongamia pinnata, Tamarindus indica, Gmelina arborea, Wrightia tinctoria, Syzygium cumini, Albizia lebbeck, Terminalia bellirica, and Azadirachta indica performed well in the native soil. This study demonstrated, by using native trees and PGPB, a possibility to restore the degraded forest. PMID:27195310

  16. 蒸汽爆破预处理和微生物发酵对玉米秸秆降解率的影响%Effects of steam explosion and microbial fermentation on corn straw degradation

    Institute of Scientific and Technical Information of China (English)

    常娟; 尹清强; 任天宝; 张百良; 宋安东; 左瑞雨; 卢敏; 刘俊熙

    2011-01-01

    为了提高玉米秸秆的利用效率,首先对玉米秸秆进行蒸汽爆破预处理(压力2.5 Mpa,维压200 s),然后再进行米曲霉发酵,研究物理和生物学处理对秸秆成分及相关酶活变化的影响.结果表明,蒸汽爆破使秸秆中纤维素、半纤维素和木质素的降解率分别达到8.47%、50.45%和36.65%(p<0.05).爆破预处理的秸秆再经米曲霉发酵6 d后,秸秆中纤维素和半纤维素的降解率分别为27.89%和64.80%(p<0.05),发酵秸秆中的滤纸酶、羧甲基纤维素酶、淀粉酶和蛋白酶活力分别达到335.10、1138.92、1954.20和201.99 U/g.爆破预处理后进行米曲霉发酵,对于提高玉米秸秆的降解率具有非常重要的意义.%The effects of steam explosion (2.5 MPa, 200 s) and Aspergillus oryzae fermentation on corn straw degradation were evaluated according to the changes of compositions and enzyme activities in the fermented products.The results showed that the steam explosion pre-treatment for com straw could make the degradation rates of cellose,hemicelluloses and lignin reach to 8.47%, 50.45% and 36.65%, respectively (P<0.05).After pretreated with steam explosion the corn straw was fermented by Aspergillus oryzae for 6 days, the contents of cellulose and hemicellulose in the fermented com straw were decreased by 27.89% and 64.80% respectively, compared with the original corn straw (P<0.05).The filter paper cellulase, CMCase, amylase and protease activities in the fermented products were 335.10,1 138.92, 1954.20 and 201.99 U/g, respectively.Pre-treating with steam explosion and followed by Aspergillus oryzae fermentation seems to be a prospective method for eom straw degradation and application.

  17. Assessing the hydrocarbon degrading potential of indigenous bacteria isolated from crude oil tank bottom sludge and hydrocarbon-contaminated soil of Azzawiya oil refinery, Libya.

    Science.gov (United States)

    Mansur, Abdulatif A; Adetutu, Eric M; Kadali, Krishna K; Morrison, Paul D; Nurulita, Yuana; Ball, Andrew S

    2014-09-01

    The disposal of hazardous crude oil tank bottom sludge (COTBS) represents a significant waste management burden for South Mediterranean countries. Currently, the application of biological systems (bioremediation) for the treatment of COTBS is not widely practiced in these countries. Therefore, this study aims to develop the potential for bioremediation in this region through assessment of the abilities of indigenous hydrocarbonoclastic microorganisms from Libyan Hamada COTBS for the biotreatment of Libyan COTBS-contaminated environments. Bacteria were isolated from COTBS, COTBS-contaminated soil, treated COTBS-contaminated soil, and uncontaminated soil using Bushnell Hass medium amended with Hamada crude oil (1 %) as the main carbon source. Overall, 49 bacterial phenotypes were detected, and their individual abilities to degrade Hamada crude and selected COBTS fractions (naphthalene, phenanthrene, eicosane, octadecane and hexane) were evaluated using MT2 Biolog plates. Analyses using average well colour development showed that ~90 % of bacterial isolates were capable of utilizing representative aromatic fractions compared to 51 % utilization of representative aliphatics. Interestingly, more hydrocarbonoclastic isolates were obtained from treated contaminated soils (42.9 %) than from COTBS (26.5 %) or COTBS-contaminated (30.6 %) and control (0 %) soils. Hierarchical cluster analysis (HCA) separated the isolates into two clusters with microorganisms in cluster 2 being 1.7- to 5-fold better at hydrocarbon degradation than those in cluster 1. Cluster 2 isolates belonged to the putative hydrocarbon-degrading genera; Pseudomonas, Bacillus, Arthrobacter and Brevundimonas with 57 % of these isolates being obtained from treated COTBS-contaminated soil. Overall, this study demonstrates that the potential for PAH degradation exists for the bioremediation of Hamada COTBS-contaminated environments in Libya. This represents the first report on the isolation of

  18. Anaerobic biodegradation of 13C6-phenol: Analysis of bacteria population involved in two different degradation kinetics

    OpenAIRE

    Hoyos Hernandez, C.; Limam, I.; Desmond, E.; Bouchez, T.; Mazeas, L.

    2013-01-01

    International audience; Biodegradation of 13C6-phenol until mineralisation was observed under mesophilic and thermophilic conditions during the degradation of municipal solid waste. In Mesophilic conditions, as well as in thermophilic, two types of degradation kinetics were obtained. One follows a first order kinetic and the other follows a lag-phase model. The pyrosequencing analysis shows that in the fastest kinetic Clostridium sp. and Anaerobranca sp. were the microorganisms majorly presen...

  19. Applications of aerobic and anaerobic bacteria in the fields of biological degradation of contaminants and biological wastewater treatment

    OpenAIRE

    Jovcic, Alexander

    2003-01-01

    In the work here presented four distinctly different problems were investigated. The first problem was an investigation into the degradation of Dichloroethylene (DCE) and 1,1-bis (p-Chlorophenyl)-2-dichloroethylene (DDE) utilising pure bacterial cultures. The second investigation dealt with the degradation of DDE and polychlorinated Biphenyl’s (PCB’s) utilising anaerobic sediments and soils from New Zealand. The third investigation worked on the Granulation of anaerobic River-sediments in Upf...

  20. Enhancing the cellulose-degrading activity of cellulolytic bacteria CTL-6 (Clostridium thermocellum) by co-culture with non-cellulolytic bacteria W2-10 (Geobacillus sp.).

    Science.gov (United States)

    Lü, Yucai; Li, Ning; Yuan, Xufeng; Hua, Binbin; Wang, Jungang; Ishii, Masaharu; Igarashi, Yasuo; Cui, Zongjun

    2013-12-01

    The effect of a non-cellulolytic bacterium W2-10 (Geobacillus sp.) on the cellulose-degrading activity of a cellulolytic bacterium CTL-6 (Clostridium thermocellum) was determined using cellulose materials (paper and straw) in peptone cellulose solution (PCS) medium under aerobic conditions. The results indicated that in the co-culture, addition of W2-10 resulted in a balanced medium pH, and may provide the required anaerobic environment for CTL-6. Overall, addition of W2-10 was beneficial to CTL-6 growth in the adverse environment of the PCS medium. In co-culture with W2-10, the CTL-6 cellulose degradation efficiency of filter paper and alkaline-treated wheat straw significantly increased up to 72.45 and 37.79 %, respectively. The CMCase activity and biomass of CTL-6 also increased from 0.23 U ml(-1) and 45.1 μg ml(-1) (DNA content) up to 0.47 U ml(-1) and 112.2 μg ml(-1), respectively. In addition, co-culture resulted in accumulation of acetate and propionate up to 4.26 and 2.76 mg ml(-1). This was a respective increase of 2.58 and 4.45 times, in comparison to the monoculture with CTL-6.

  1. Two-colour fluorescence fluorimetric analysis for direct quantification of bacteria and its application in monitoring bacterial growth in cellulose degradation systems.

    Science.gov (United States)

    Duedu, Kwabena O; French, Christopher E

    2017-04-01

    Monitoring bacterial growth is an important technique required for many applications such as testing bacteria against compounds (e.g. drugs), evaluating bacterial composition in the environment (e.g. sewage and wastewater or food suspensions) and testing engineered bacteria for various functions (e.g. cellulose degradation). T?=1,^FigItem(1) ^ReloadFigure=Yesraditionally, rapid estimation of bacterial growth is performed using spectrophotometric measurement at 600nm (OD600) but this estimation does not differentiate live and dead cells or other debris. Colony counting enumerates live cells but the process is laborious and not suitable for large numbers of samples. Enumeration of live bacteria by flow cytometry is a more suitable rapid method with the use of dual staining with SYBR I Green nucleic acid gel stain and Propidium Iodide (SYBR-I/PI). Flow cytometry equipment and maintenance costs however are relatively high and this technique is unavailable in many laboratories that may require a rapid method for evaluating bacteria growth. We therefore sought to adapt and evaluate the SYBR-I/PI technique of enumerating live bacterial cells for a cheaper platform, a fluorimeter. The fluorimetry adapted SYBR-I/PI enumeration of bacteria in turbid growth media had direct correlations with OD600 (p>0.001). To enable comparison of fluorescence results across labs and instruments, a fluorescence intensity standard unit, the equivalent fluorescent DNA (EFD) was proposed, evaluated and found useful. The technique was further evaluated for its usefulness in enumerating bacteria in turbid media containing insoluble particles. Reproducible results were obtained which OD600 could not give. An alternative method based on the assessment of total protein using the Pierce Coomassie Plus (Bradford) Assay was also evaluated and compared. In all, the SYBR-I/PI method was found to be the quickest and most reliable. The protocol is potentially useful for high-throughput applications such as

  2. Effect of Pretreatment by Steam Explosion on Degradation of the Banana Stalk Component%蒸汽爆破预处理降解香蕉茎秆纤维素组分的研究

    Institute of Scientific and Technical Information of China (English)

    郑丽丽; 韩冰莹; 盛占武; 陈娇; 李奕星; 赵立欣

    2014-01-01

    分析测试香蕉茎秆总固体含量(TS)和挥发性固体含量(VS)及香蕉茎秆固体剩余物中纤维素、半纤维素、木质素含量;采用蒸汽爆破法对香蕉茎秆进行预处理,探讨不同压力及维压时间下对香蕉茎秆中半纤维素、纤维素、木质素组分的降解程度,分析蒸汽爆破预处理优缺点。试验结果表明,经过蒸汽爆破预处理后,香蕉茎秆的组分被不同程度破坏,当压力为3.5 MPa,维压时间为4 min 时,香蕉茎秆中半纤维素含量由预处理前13.33%降至4.36%,降解率高达67.29%,纤维素含量由48.33%降至39.15%,降解率为18.99%,木质素含量由14.62%降至6.52%,降解率为55.40%,总体含量由76.28%降至50.03%,降解率为34.41%。说明蒸汽爆破技术对香蕉茎秆固体剩余物的预处理效果比较显著,有一定的优越性。%Total solids content (TS) and volatile solids content (VS) of banana stalk were tested, and the content of cellulose, hemicellulose and lignin. Pretreatment banana stalk by steam explosion with different pressures and different time of keeping pressure. Analysis of degradation law of banana stalk hemicellulose, cellulose and lignin content after pretreatment. The samples of the treated and untreated banana stalks were with drawn to determined cellulose, hemicelluloses and lignose contents in dry matter. The results showed that when the explosion pressure was 3.5MPa, the time of maintain steam explosion pressure was 4min, degradation rate of hemicellulose, cellulose and lignin was 67.29%, 18.99%, and 55.40%, degradation rate of the overall content was 34.41%, These results indicate that pretreatment by steam explosion can degrade cellulose of banana stalks, and hemicellulose、 lignin were degraded significantly. The method of steam explosion are further advantages such as environmentally friendly and high-efficiency.

  3. Simultaneous photocatalytic and microbial degradation of dye-containing wastewater by a novel g-C3N4-P25/photosynthetic bacteria composite

    Science.gov (United States)

    Zhang, Xinying; Wu, Yan; Xiao, Gao; Tang, Zhenping; Wang, Meiyin; Liu, Fuchang; Zhu, Xuefeng

    2017-01-01

    Azo dyes are very resistant to light-induced fading and biodegradation. Existing advanced oxidative pre-treatment methods based on the generation of non-selective radicals cannot efficiently remove these dyes from wastewater streams, and post-treatment oxidative dye removal is problematic because it may leave many byproducts with unknown toxicity profiles in the outgoing water, or cause expensive complete mineralization. These problems could potentially be overcome by combining photocatalysis and biodegradation. A novel visible-light-responsive hybrid dye removal agent featuring both photocatalysts (g-C3N4-P25) and photosynthetic bacteria encapsulated in calcium alginate beads was prepared by self-assembly. This system achieved a removal efficiency of 94% for the dye reactive brilliant red X-3b and also reduced the COD of synthetic wastewater samples by 84.7%, successfully decolorized synthetic dye-contaminated wastewater and reduced its COD, demonstrating the advantages of combining photocatalysis and biocatalysis for wastewater purification. The composite apparently degrades X-3b by initially converting the dye into aniline and phenol derivatives whose aryl moieties are then attacked by free radicals to form alkyl derivatives, preventing the accumulation of aromatic hydrocarbons that might suppress microbial activity. These alkyl intermediates are finally degraded by the photosynthetic bacteria. PMID:28273118

  4. Growth kinetics and lyophilisation characteristics of a mixed population of phenol-degrading bacteria; Ueber Wachstumskinetik und Lyophilisierbarkeit einer Mischpopulation von Phenole abbauenden Bakterien

    Energy Technology Data Exchange (ETDEWEB)

    Poszich-Buscher, C.

    1993-05-01

    Reversibly inactivated microorganisms (RIM) were compared which are able to utilize the phenolic components of coking plant effluents and residues completely as a source of carbon and energy for growth. For this purpose, a mixed population of phenol-degrading bacterica - part of which come from coking residues - was cultivated in a continuously charged bioreactor with biomass recirculation in selective conditions, with phenol and cresol and xylenol isomers as the only source of carbon and energy. The degradation potential of the mixed population of bacteria was investigated as well as the applicability of this method for cultivating this mixed population of bacteria. (orig./BBR) [Deutsch] Reversibel inaktivierte Mikroorganismen (RIM), die die phenolischen Komponenten von Kokereiabwasser bzw. -altlasten vollstaendig als Kohlenstoff- und Energiequelle fuer ihr Wachstum nutzen koennen, wurden hergestellt. Dazu wurde eine phenoleabbauende Bakterienmischpopulation, die z.T. aus Kokereialtlasten stammte, in einem kontinuierlich beschickten Bioreaktor mit Biomasserueckfuehrung angezogen, und unter selektiven Bedingungen mit Phenol, den Isomeren des Kresols und des Xylenols als alleinige Kohlenstoff- und Energiequelle versorgt. Es wurde das Abbaupotential dieser Bakterienmischpopulation und die Brauchbarkeit des gewaehlten Verfahrens zur Anzucht dieser Bakterienmischpopulation untersucht. (orig./BBR)

  5. Bacterial Structure and Characterization of Plant Growth Promoting and Oil Degrading Bacteria from the Rhizospheres of Mangrove Plants

    NARCIS (Netherlands)

    do Carmo, Flavia Lima; dos Santos, Henrique Fragoso; Martins, Edir Ferreira; van Elsas, Jan Dirk; Rosado, Alexandre Soares; Peixoto, Raquel Silva

    2011-01-01

    Most oil from oceanic spills converges on coastal ecosystems, such as mangrove forests, which are threatened with worldwide disappearance. Particular bacteria that inhabit the rhizosphere of local plant species can stimulate plant development through various mechanisms; it would be advantageous if t

  6. Isolation, Identification of Chlorimuron-ethyl Degradation Bacteria and Its Degradation Characteristics%氯嘧磺隆降解细菌的分离鉴定及其降解特性

    Institute of Scientific and Technical Information of China (English)

    纪明山; 颜克成; 刘周成; 冯俊义; 黄均艳

    2012-01-01

    The aims were to solve the problem of soybean herbicide chlorimuron-ethy residues in soil for long time, and provide actinomyces source for bioremediation of soil contaminated by chlorimuron-ethy. A bacteria which was able to degrade chlorimuron-ethyl and could grow using chlorimuron-ethyl as the sole nitrogen, was isolated from the soil of applying with chlorimuron-ethyl for many years by enrichment culture, which was named SN10. Based on physiological and biochemical characteristics and 16S rRNA sequence, the strain was identified preliminarily as Bacillus cereus. The influencing factors (temperature, pH, inoculation amount and incubation time) were studied with bacteria growth mass and degradation ration as indexes. The results showed that, the optimal degradation ratio occurred at the condition of 28℃, pH 7, inoculation amount of 7%, incubation time 4 days. Under these conditions, 81.2% chlorimuron-ethyl had been degraded. By chlorimuron-ethyl degradation bacteria evaluation of the repair test, bacteria and drug treatment of maize seed germination and plant height were higher than only drug treatment, SN10 degraded obviously chlorimuron-ethyl in soil.%为了解决大豆田除草剂氯嘧磺隆在土壤中残留时间长的问题,为氯嘧磺隆污染的土壤的生物修复提供菌源,利用富集培养技术,从多年使用氯嘧磺隆的土壤中分离得到1株能以氯嘧磺隆作为唯一氮源生长的细菌,命名为SN10菌株.通过对该菌株的生理生化鉴定和16S rDNA序列分析,初步鉴定菌株SN10为蜡样芽孢杆菌(Bacillus cereus).以SN10菌体生长量、氯嘧磺隆降解率为指标,研究了(温度、pH、接菌量、培养时间)对SN10生长量和降解能力的影响.结果表明,SN10最佳生长量和降解条件为28℃,pH 7,培养时间4天,接菌量为7%,在此条件下,SN10菌株对氯嘧磺隆的降解率达到87.2%.通过氯嘧磺隆降解菌的修复效果评价试验,得出加菌加药处理组的玉米种子的

  7. Cr-resistant rhizo- and endophytic bacteria associated with Prosopis juliflora and their potential as phytoremediation enhancing agents in metal-degraded soils.

    Science.gov (United States)

    Khan, Muhammad U; Sessitsch, Angela; Harris, Muhammad; Fatima, Kaneez; Imran, Asma; Arslan, Muhammad; Shabir, Ghulam; Khan, Qaiser M; Afzal, Muhammad

    2014-01-01

    Prosopis juliflora is characterized by distinct and profuse growth even in nutritionally poor soil and environmentally stressed conditions and is believed to harbor some novel heavy metal-resistant bacteria in the rhizosphere and endosphere. This study was performed to isolate and characterize Cr-resistant bacteria from the rhizosphere and endosphere of P. juliflora growing on the tannery effluent contaminated soil. A total of 5 and 21 bacterial strains were isolated from the rhizosphere and endosphere, respectively, and were shown to tolerate Cr up to 3000 mg l(-1). These isolates also exhibited tolerance to other toxic heavy metals such as, Cd, Cu, Pb, and Zn, and high concentration (174 g l(-1)) of NaCl. Moreover, most of the isolated bacterial strains showed one or more plant growth-promoting activities. The phylogenetic analysis of the 16S rRNA gene showed that the predominant species included Bacillus, Staphylococcus and Aerococcus. As far as we know, this is the first report analyzing rhizo- and endophytic bacterial communities associated with P. juliflora growing on the tannery effluent contaminated soil. The inoculation of three isolates to ryegrass (Lolium multiflorum L.) improved plant growth and heavy metal removal from the tannery effluent contaminated soil suggesting that these bacteria could enhance the establishment of the plant in contaminated soil and also improve the efficiency of phytoremediation of heavy metal-degraded soils.

  8. Screening and characterization of purine nucleoside degrading lactic acid bacteria isolated from Chinese sauerkraut and evaluation of the serum uric acid lowering effect in hyperuricemic rats.

    Directory of Open Access Journals (Sweden)

    Ming Li

    Full Text Available Hyperuricemia is well known as the cause of gout. In recent years, it has also been recognized as a risk factor for arteriosclerosis, cerebrovascular and cardiovascular diseases, and nephropathy in diabetic patients. Foods high in purine compounds are more potent in exacerbating hyperuricemia. Therefore, the development of probiotics that efficiently degrade purine compounds is a promising potential therapy for the prevention of hyperuricemia. In this study, fifty-five lactic acid bacteria isolated from Chinese sauerkraut were evaluated for the ability to degrade inosine and guanosine, the two key intermediates in purine metabolism. After a preliminary screening based on HPLC, three candidate strains with the highest nucleoside degrading rates were selected for further characterization. The tested biological characteristics of candidate strains included acid tolerance, bile tolerance, anti-pathogenic bacteria activity, cell adhesion ability, resistance to antibiotics and the ability to produce hydrogen peroxide. Among the selected strains, DM9218 showed the best probiotic potential compared with other strains despite its poor bile resistance. Analysis of 16S rRNA sequences showed that DM9218 has the highest similarity (99% to Lactobacillus plantarum WCFS1. The acclimated strain DM9218-A showed better resistance to 0.3% bile salt, and its survival in gastrointestinal tract of rats was proven by PCR-DGGE. Furthermore, the effects of DM9218-A in a hyperuricemia rat model were evaluated. The level of serum uric acid in hyperuricemic rat can be efficiently reduced by the intragastric administration of DM9218-A (P<0.05. The preventive treatment of DM9218-A caused a greater reduction in serum uric acid concentration in hyperuricemic rats than the later treatment (P<0.05. Our results suggest that DM9218-A may be a promising candidate as an adjunctive treatment in patients with hyperuricemia during the onset period of disease. DM9218-A also has potential

  9. Underground Explosions

    Science.gov (United States)

    2015-09-09

    continuous media including, thermal effects, electromagnetic and nuclear radiation, as well as the formation of different types of waves (shock...front’, sometimes called “hydrodynamic separation” together with reconstruction of the hydrodynamic flow due to formation of thermal boundary layer...of the charge; or pre-explosion excavation; or some other techniques. For loosening, dilatant , or retarc-producing explosions, the height of the

  10. Metal-tolerant PAH-degrading bacteria: development of suitable test medium and effect of cadmium and its availability on PAH biodegradation.

    Science.gov (United States)

    Thavamani, Palanisami; Megharaj, Mallavarapu; Naidu, Ravi

    2015-06-01

    The use of metal-tolerant polyaromatic hydrocarbon (PAH)-degrading bacteria is viable for mitigating metal inhibition of organic compound biodegradation in the remediation of mixed contaminated sites. Many microbial growth media used for toxicity testing contain high concentrations of metal-binding components such as phosphates that can reduce solution-phase metal concentrations thereby underestimate the real toxicity. In this study, we isolated two PAHs-degrading bacterial consortia from long-term mixed contaminated soils. We have developed a new mineral medium by optimising the concentrations of medium components to allow the bacterial growth and at the same time maintain high bioavailable metal (Cd(2+) as a model metal) in the medium. This medium has more than 60 % Cd as Cd(2+) at pH 6.5 as measured by an ion selective electrode and visual MINTEQ model. The Cd-tolerant patterns of the consortia were tested and minimum inhibitory concentration (MIC) derived. The consortium-5 had the highest MIC of 5 mg l(-1) Cd followed by consortium-9. Both cultures were able to completely metabolise 200 mg l(-1) phenanthrene in less than 4 days in the presence of 5 mg l(-1) Cd. The isolated metal-tolerant PAH-degrading bacterial cultures have great potential for bioremediation of mixed contaminated soils.

  11. Carbon-dot-decorated TiO2 nanotube arrays used for photo/voltage-induced organic pollutant degradation and the inactivation of bacteria

    Science.gov (United States)

    Feng, Lingyan; Sun, Hanjun; Ren, Jinsong; Qu, Xiaogang

    2016-03-01

    Photoluminescent carbon dots (c-dots) have recently attracted growing interest as a new member of the carbon-nanomaterial family. Here, we report for the first time that c-dot-decorated TiO2 nanotube arrays (c-dot/TiNTs) exhibit highly enhanced abilities regarding photo/voltage-induced organic pollutant degradation and bacterial inactivation. By applying UV irradiation (365 nm) or an electrochemical potential over 3 V (versus Ag/AgCl), an organic dye and a herbicide were efficiently degraded. Moreover, the inactivation of Gram-positive S. aureus and Gram-negative E. coli bacteria was realized on a c-dot/TiNT film. The c-dots were able to absorb light efficiently resulting in multiple exciton generation and also a reduction in the recombination of the e-/h+ pair produced in c-dot/TiNT film during photo/voltage-induced degradation. It was also possible to readily regenerate the surface using ultraviolet light irradiation, leaving the whole film structure undamaged and with high reproducibility and stability.

  12. Adaptation mechanisms of bacteria during the degradation of polychlorinated biphenyls in the presence of natural and synthetic terpenes as potential degradation inducers.

    Science.gov (United States)

    Zorádová-Murínová, Slavomíra; Dudášová, Hana; Lukáčová, Lucia; Certík, Milan; Silharová, Katarína; Vrana, Branislav; Dercová, Katarína

    2012-06-01

    In this study, we examined the effect of polychlorinated biphenyls (PCBs) in the presence of natural and synthetic terpenes and biphenyl on biomass production, lipid accumulation, and membrane adaptation mechanisms of two PCB-degrading bacterial strains Pseudomonas stutzeri and Burkholderia xenovorans LB400. According to the results obtained, it could be concluded that natural terpenes, mainly those contained in ivy leaves and pine needles, decreased adaptation responses induced by PCBs in these strains. The adaptation processes under investigation included growth inhibition, lipid accumulation, composition of fatty acids, cis/trans isomerization, and membrane saturation. Growth inhibition effect decreased upon addition of these natural compounds to the medium. The amount of unsaturated fatty acids that can lead to elevated membrane fluidity increased in both strains after the addition of the two natural terpene sources. The cells adaptation changes were more prominent in the presence of carvone, limonene, and biphenyl than in the presence of natural terpenes, as indicated by growth inhibition, lipid accumulation, and cis/trans isomerization. Addition of biphenyl and carvone simultaneously with PCBs increased the trans/cis ratio of fatty acids in membrane fractions probably as a result of fluidizing effects of PCBs. This stimulation is more pronounced in the presence of PCBs as a sole carbon source. This suggests that PCBs alone have a stronger effect on bacterial membrane adaptation mechanisms than when added together with biphenyl or natural or synthetic terpenes.

  13. Occurrence of diverse alkane hydroxylase alkB genes in indigenous oil-degrading bacteria of Baltic Sea surface water.

    Science.gov (United States)

    Viggor, Signe; Jõesaar, Merike; Vedler, Eve; Kiiker, Riinu; Pärnpuu, Liis; Heinaru, Ain

    2015-12-30

    Formation of specific oil degrading bacterial communities in diesel fuel, crude oil, heptane and hexadecane supplemented microcosms of the Baltic Sea surface water samples was revealed. The 475 sequences from constructed alkane hydroxylase alkB gene clone libraries were grouped into 30 OPFs. The two largest groups were most similar to Pedobacter sp. (245 from 475) and Limnobacter sp. (112 from 475) alkB gene sequences. From 56 alkane-degrading bacterial strains 41 belonged to the Pseudomonas spp. and 8 to the Rhodococcus spp. having redundant alkB genes. Together 68 alkB gene sequences were identified. These genes grouped into 20 OPFs, half of them being specific only to the isolated strains. Altogether 543 diverse alkB genes were characterized in the brackish Baltic Sea water; some of them representing novel lineages having very low sequence identities with corresponding genes of the reference strains.

  14. Natural Combination of Genetic Systems for Degradation of Phenol and Resistance to Heavy Metals in Phenol and Cyanide Assimilating Bacteria

    Directory of Open Access Journals (Sweden)

    El-Deeb, B.

    2009-01-01

    Full Text Available Combination of genetic systems of degradation of xenobiotic compound and heavy metal resistance is one of the approaches to the creation of polyfunctional strains for bioremediation of soil after co-contamination with organic pollutants and heavy metals. A bacterial strain Pseudomonas putida PhCN (pPhCN1, pPhCN2 has been obtained. This bacterium contains two plasmids, a 120-kb catabolic plasmid that encodes for breakdown of phenol (pPhCN1 and pPhCN2 plasmid that codes for cadmium and copper resistant. Cyanide assimilation by this bacterium is encoded by chromosomal genes. The inhibitory effect of cadmium (Cd2+ or copper (Cu2+ on the degradation of phenol by P. putida strains PhCN and PhCN1 (contained pPhCN1 were investigated in the presence of phenol and cyanide as a sole carbon and nitrogen source, respectively. The resistant strain PhCN showed high ability to degrade phenol and cyanide in presence of Cd2+ or Cu2+ as compared to the sensitive strain PhCN1. In addition, Cd2+ or Cu2+ was also found to exert a strong inhibitory effect on the C23O dioxygenase enzyme activity in the presence of cyanide as a nitrogen source. However, the presence of heavy metal resistance plasmid alleviated the inhibitory effect of metals on the enzyme activity in resistant strain.

  15. Cellulose degrading bacteria isolated from industrial samples and the gut of native insects from Northwest of Argentina.

    Science.gov (United States)

    Manfredi, Adriana P; Perotti, Nora I; Martínez, María A

    2015-12-01

    The raw materials used to produce bioethanol mostly are food crops, which has led to conflicts on food security. It is, therefore, recommended the gradual replacement for second generation substrates such as lignocellulosic materials. Herein, cellulolytic bacteria were isolated from the gut content of native larvae from Lepidoptera, Coleoptera, and adults of Isoptera. Few environmental samples from the pulp and paper feedstock were also assessed. A total of 233 isolates were obtained using enrichment cultures and classic criteria. Interestingly, several halo-forming colonies were found to be bacterial consortia that presented difficulties to take apart the microbial members. Those pure isolates which hydrolyzed cellulose in larger extend (45 strains) were selected and identified by means of 16S rRNA sequence analysis. Firmicutes was the prevalent phylum (62.2%) being Bacillus spp. the most frequent genus, while Paenibacillus, Brevibacillus, Cohnella, and Staphylococcus species were less frequent. The phylum Actinobacteria (6.7%) was represented by isolates related to Agromyces spp. and Microbacterium spp. Regarding Gram-negative bacteria (31.1%), the more depicted genus was Pseudomonas spp., and members of Achromobacter spp., Enterobacter spp., and Bacteroidetes phylum were also selected. These native bacterial strains are expected to enlarge the cellulolytic toolbox for efficient biomass deconstruction.

  16. Phylogeny of Cyclic Nitramine-Degrading Psychrophilic Bacteria in Marine Sediment and Their Potential Role in the Natural Attenuation of Explosives

    Science.gov (United States)

    2004-01-01

    isolates. The phylogenetic tree was generated ba neighbor-joining method included in the MEGA2 software package. The ba node is the statistical bootstrap...25 30 35 HAW-EB5 R D X c o n ce n tr at io n ( µM ) M etab o lite co n cen tratio n (µM ) (N 2 O , % o f to tal N ) 3.3. Cyclic nitramine...Press, New York. [28] Kumar, S., Tamura, K., Jakobsen, I.B. and Nei, M. (2001) MEGA2: molecular evolutionary genetics analysis software

  17. Phylogenetic diversity of carbohydrate degrading culturable bacteria from Mandovi and Zuari estuaries, Goa, west coast of India

    Digital Repository Service at National Institute of Oceanography (India)

    Khandeparker, R.; Verma, P.; Meena, R.; Deobagkar, D.D.

    %). The isolation of large number of carbohydrate degraders belonging to different groups highlights the important role of these micro organisms in carbohydrate turnover in Mandovi and Zuary estuary. It has been reported by Beleneva et al. (2010) that the strains...–516. �� Miranda, C.A.C., O.B., Martins., Clementino, M.M., 2008 Species-level identification of Bacillus strains isolates from marine sediments by conventional biochemical,16S rRNA 10 gene sequencing and inter-tRNA gene sequence lengths analysis. Antonie van...

  18. 以玉米秸秆为底物的纤维素降解菌与产电菌联合产电的可行性%Electricity generation from corn stover by cellulose degradation bacteria and exoelectrogenic bacteria

    Institute of Scientific and Technical Information of China (English)

    冯玉杰; 王鑫; 王赫名; 于艳玲; 李冬梅

    2009-01-01

    The possibility of direct electricity production from steam exploded com stover residue was studied in single chamber air-cathode microbial fuel cells ( MFCs) using two cellulose degrading bacteria ( Chaetomium sp. , Bacillus sp. ) and two cellulose degrading communities (PCS-S and H-C; stored in our laboratory) as biocatalysts. Both pure strains and mixed communities can decompose corn stover in MFCs, but little electricity ( < 90 mV , 1000Ω) was generated during this process. Increasing the temperature from 30 to 38. 5℃ did not increase voltage outputs. Using domestic wastewater solely as inoculum, electricity cannot be generated from degradation of com stover. Maximum voltage was observed in the MFC using H-C co-operated with the exoelectrogenic bacteria. The maximum power density from steam exploded com stover residue was 406 mW · m~(-2) , which was only 20% lower than the 510 mW·m~(-2) obtained using glucose as a substrate.%利用单室空气阴极微生物燃料电池(MFC)反应器,以玉米秸秆为底物.以本实验室筛选和保存的纤维素降解菌Chaetomium sp.和Bacillus sp.,以及纤维素降解混合菌PCS-S和H-C为秸秆降解的生物催化剂,探讨了以汽爆秸秆固体为底物进行微生物产电的可行性.结果表明,在MFC系统内,纤维索降解纯菌和混合菌均能使纤维素降解,但产生的电压很低(<90mV,1000Ω),升高温度(30-38.5℃)对电压输出无明显影响.单独以生活污水作为菌源不能直接降解秸秆产电.只有将H-C和生活污水(产电菌源)混合作为接种体,MFC才能获得较高的电压输出.此时得到的以汽爆秸秆固体作为底物时的最大功率密度为406mW·m-2,仅比葡萄糖作为底物时所得到的最大功率密度510 mW·m-2低20%.

  19. A simple and effective plating method to screen polycyclic aromatic hydrocarbon-degrading bacteria under various redox conditions.

    Science.gov (United States)

    Um, Youngsoon; Chang, Matthew Wook; Holoman, Tracey Pulliam

    2010-09-01

    Agar plates with a polycyclic aromatic hydrocarbon (PAH) layer have been used to screen for microorganisms that degrade PAHs, leaving clear zones around colonies; however, there are several problems with previous methods such as undesired contamination in the fume hood and difficulty in controlling the amount of PAH on the plates. In this study, we developed a modified screening method to address the drawbacks encountered with previous screening methods. A uniform white layer of PAHs was generated by spreading PAHs dissolved in volatile solvents over a surface of solidified agar medium, followed by the evaporation of the solvents. An inoculation was then performed by spreading a molten agar medium containing microbial samples over the solidified agar medium with a PAH layer. Subsequently, the white PAH layer migrated to the surface of the molten agar medium. This essential modification enabled us not only to solve problems of the previous screening methods but also to prepare an agar plate with a PAH layer without a complicated experimental scheme in the anaerobic chamber. After solidification of the molten agar medium and incubation of the plates, clear zones were successfully detected around colonies with aerobic and anaerobic PAH-degrading microbial cultures.

  20. Persistence and degrading activity of free and immobilised allochthonous bacteria during bioremediation of hydrocarbon-contaminated soils.

    Science.gov (United States)

    Rivelli, Valentina; Franzetti, Andrea; Gandolfi, Isabella; Cordoni, Sergio; Bestetti, Giuseppina

    2013-02-01

    Rhodococcus sp. and Pseudomonas sp. bioremediation experiments were carried out using free and immobilized cells on natural carrier material (corncob powder) in order to evaluate the feasibility of its use in the bioremediation of hydrocarbon-contaminated soils. Terminal restriction fragment length polymorphism analysis was performed on the 16S rRNA gene as molecular fingerprinting method in order to assess the persistence of inoculated strains in the soil over time. Immobilized Pseudomonas cells degraded hydrocarbons more efficiently in the short term compared to the free ones. Immobilization seemed also to increase cell growth and stability in the soil. Free and immobilized Rhodococcus cells showed comparable degradation percentages, probably due to the peculiarity of Rhodococcus cells to aggregate into irregular clusters in the presence of hydrocarbons as sole carbon source. It is likely that the cells were not properly adsorbed on the porous matrix as a result of the small size of its pores. When Rhodococcus and Pseudomonas cells were co-immobilized on the matrix, a competition established between the two strains, that probably ended in the exclusion of Pseudomonas cells from the pores. The organic matrix might act as protective agent, but it also possibly limited cell density. Nevertheless, when the cells were properly adsorbed on the porous matrix, the immobilization became a suitable bioremediation strategy.

  1. Characterization of Carbofuran Degrading Bacteria Obtained from Potato Cultivated Soils with Different Pesticide Application Records / Caracterización de Bacterias Degradadoras de Carbofuran Obtenidas de Suelos Bajo Cultivo de Papa y con Diferente Histor

    Directory of Open Access Journals (Sweden)

    Castellanos Rozo José

    2013-08-01

    Full Text Available Abstract. Eighty-two bacterial isolates with potential Carbofurandegradation activity (Furadan®3SC were obtained from soilscultivated with the potato variety Unica (Solanum tuberosumin Silos, Norte de Santander (Colombia, with different recordsof pesticide application. The bacteria were selected for theirability to grow at 25 °C for 72 h in media containing 200 mgL-1 of analytical Carbofuran as the sole source of carbon and/or nitrogen. The results showed that ten isolates, 12% of those obtained, grew in the culture media. Eight of theses isolates were obtained from soils with a high pesticide exposure (eight years of application, and identified, by macroscopic, microscopic and biochemical characteristics, as Sphingomonas paucimobilis. The other two were obtained from soils with three years and one year of application and were identified as Pseudomonas aeruginosa and Yersinia pseudotuberculosis, respectively. Subsequently, these bacteria were tested for their ability of hydrolytic degradation of Carbofuran; the results show that the pesticide was degraded only by the isolates of Sphingomonas paucimobilis for 72 h. The results obtained in the in vitro tests show the bacterial metabolic capacity for the biodegradation of Carbofuran, highlighting the potential use of the bacteria for future field evaluation tests in places where residues of the pesticide may exist, as an alternative to control the impact that N-methyl carbamate pesticides have on the environment and human health. / Resumen. Ochenta y dos aislamientos bacterianos con actividad potencial de degradación de Carbofuran (Furadan®3SC, fueron obtenidos de suelos, cultivados con papa (Solanum tuberosum variedad Única, del municipio de Silos, Norte de Santander (Colombia con diferente historia de aplicación del plaguicida. Las bacterias fueron seleccionadas por su capacidad para crecer a 25 °C durante 72 h, en medios de cultivo conteniendo 200 mg L-1 de Carbofuran analítico como

  2. Microcalorimetric investigation of the effect of non-ionic surfactant on biodegradation of pyrene by PAH-degrading bacteria Burkholderia cepacia.

    Science.gov (United States)

    Chen, Ke; Zhu, Qing; Qian, Yiguang; Song, Ying; Yao, Jun; Choi, Martin M F

    2013-12-01

    Polycyclic aromatic hydrocarbons (PAHs) are widespread in various ecosystems and are pollutants of great concern due to their potential toxicity, mutagenecity and carcinogenicity. Surfactant has become a hot topic for its wide application in the bioremediation of PAHs. The aim of this work is to explore a microcalorimetric method to determine the toxic effect of pyrene on Bacillus subtilis (B. subtilis) and the PAH-degrading bacteria Burkholderia cepacia (B. cepacia) and to evaluate the effect of Tween 80 on biodegradation of pyrene. Power-time curves were studied and calorimetric parameters including the growth rate constant (k), half inhibitory concentration (IC₅₀), and total thermal effect (Q(T)) were determined. B. subtilis, B. cepacia and B. cepacia with Tween 80 were completely inhibited when the concentration of pyrene were 200, 800 and 1600 µg mL⁻¹, respectively. B. cepacia shows better tolerance to pyrene than B. subtilis. Tween 80 significantly improves the biodegradation of pyrene by increasing the bioavailability of pyrene. In addition, the expression of catechol 2,3-dioxygenase (C23O) in B. cepacia is responsible for the degradation of pyrene and plays an important role in improving the biodegradation of pyrene. Moreover, the activity of C23O increases with the application of Tween 80. The enhanced bioavailability and biodegradation of pyrene by Tween 80 shows the potential use of Tween 80 in the PAHs bioremediation.

  3. 菠萝渣纤维素降解菌的筛选及鉴定%Screening and Identification of Cellulose Degrading-Bacteria from Fermented Pineapple Residue

    Institute of Scientific and Technical Information of China (English)

    罗萍; 陈永辉; 贺军军; 李勤奋; 刘洋; 易润华

    2011-01-01

    In order to accelerate the fermentation of pineapple residue, various cellulose degrading-bacteria were isolated from naturally fermented pineapple residue by using manifold selective media, and obtained a pineapple residue cellulose degrading strain c3bl-3 through preliminary and repeated screenings with optimal medium of protein cellulose medium (PCS).It was identified as Chryseobacterium sp.according to its morphology, physiology, bio-chemical and molecular characteristics.%为了加快菠萝渣快速发酵,通过利用多种选择性培养基,从自然发酵的菠萝渣中分离到多种纤维素分解菌,经过初筛和复筛,获得了降解菠萝渣纤维素的菌株c3b1-3,其最适合的培养基为蛋白纤维素培养基;通过形态、生理生化特征和分子综合鉴定得出c3b1-3为金黄杆菌属(Chryseobacterium sp.).

  4. 甘蔗渣纤维素降解菌的筛选及鉴定%Screening and Identification of Cellulose Degrading-Bacteria from Fermented Bagasse

    Institute of Scientific and Technical Information of China (English)

    贺军军; 罗萍; 陈永辉; 易润华; 李勤奋; 戴小红

    2011-01-01

    Several cellulose degrading-bacteria were isolated form naturally fermented bagasse at different stages using multiple selective media. Strain clg3-3, which had the capability of degrading cellulose of bagasse, was obtained through preliminary and secondary screenings, as well as the optimal PCS medium. Strain clg3-3 was identifled as Achromobacter xylosoxidans according to its morphology, physiology, bio-chemical and molecular characteristics.%通过利用多种选择性培养基,从自然发酵不同阶段的甘蔗渣中分离到多种纤雏素分解菌,经过初筛和复筛,获得了降解纤维素的功能菌株clg3-3及其最适功能培养基蛋白胨纤维素培养基(PCS),并通过形态、生理生化和分子综合鉴定得出clg3-3鉴定为木糖氧化无色杆菌(Achromobacter xylosoxidans).

  5. Isolation and identification of atrazine-degrading bacteria and its degradation characteristics%阿特拉津高效降解菌株的筛选和降解特性研究

    Institute of Scientific and Technical Information of China (English)

    朱静; 李铁晶

    2012-01-01

    用富集培养法从城市污水处理厂的污泥中分离得到一株能够降解除草剂阿特拉津的降解菌株,命名为L-1.接种于500mg·L-1的阿特拉津无机盐培养基,96h对阿特拉津的降解率达到94.8%,降解效果理想,对其进行菌种的初步鉴定并对其降解特性进行研究.结果表明,该菌株被鉴定为节杆菌( Arthrobacter sp.).通过室内降解效果优化试验,确定菌株L-1对阿特拉津最佳降解条件:温度为30℃,初始pH值范围为7~8.%One atrazine-degrading bacteria named L-l was isolated from sludge of municipal sewage treatment plant by enrichment culture.After 96 hours, L-l could degrade atrazine of 500rag-L"' up to 94.8%.Based on physiological and biochemical testing and 16S rRNA gene sequence analysis, L-lwas identified as Arthrobacter sp.. The optimum degradation conditions were optimized as followinguhe temperature was 301C and the initial pH was 7-8.

  6. Explosive Start

    Institute of Scientific and Technical Information of China (English)

    FRANCISCO; LITTLE

    2006-01-01

    I ducked involuntarily as the first set of explosions went off and made my way in double time to the street corner, where I had spotted an arcade that could be used for shelter. Running quickly in a crouched, military maneuver while inhaling gunpowder fumes, I was totally oblivious to the laughter and head-shaking coming

  7. Niche explosion.

    Science.gov (United States)

    Normark, Benjamin B; Johnson, Norman A

    2011-05-01

    The following syndrome of features occurs in several groups of phytophagous insects: (1) wingless females, (2) dispersal by larvae, (3) woody hosts, (4) extreme polyphagy, (5) high abundance, resulting in status as economic pests, (6) invasiveness, and (7) obligate parthenogenesis in some populations. If extreme polyphagy is defined as feeding on 20 or more families of hostplants, this syndrome is found convergently in several species of bagworm moths, tussock moths, root weevils, and 5 families of scale insects. We hypothesize that extreme polyphagy in these taxa results from "niche explosion", a positive feedback loop connecting large population size to broad host range. The niche explosion has a demographic component (sometimes called the "amplification effect" in studies of pathogens) as well as a population-genetic component, due mainly to the increased effectiveness of natural selection in larger populations. The frequent origins of parthenogenesis in extreme polyphages are, in our interpretation, a consequence of this increased effectiveness of natural selection and consequent reduced importance of sexuality. The niche explosion hypothesis makes detailed predictions about the comparative genomics and population genetics of extreme polyphages and related specialists. It has a number of potentially important implications, including an explanation for the lack of observed trade-offs between generalists and specialists, a re-interpretation of the ecological correlates of parthenogenesis, and a general expectation that Malthusian population explosions may be amplified by Darwinian effects.

  8. Degradation of paraoxon (VX chemical agent simulant) and bacteria by magnesium oxide depends on the crystalline structure of magnesium oxide.

    Science.gov (United States)

    Sellik, A; Pollet, T; Ouvry, L; Briançon, S; Fessi, H; Hartmann, D J; Renaud, F N R

    2016-11-22

    In this work, our goal was to study the capability of a single metallic oxide to neutralize a chemical agent and to exhibit an antibacterial effect. We tested two types of magnesium oxides, MgO. The first MgO sample tested, which commercial data size characteristic was -325 mesh (MgO-1) destroyed in 3 h, 89.7% of paraoxon and 93.2% of 4-nitrophenol, the first degradation product. The second MgO sample, which commercial data size was <50 nm (MgO-2) neutralized in the same time, 19.5% of paraoxon and 10.9% of 4-nitrophenol. For MgO-1 no degradation products could be detected by GC-MS. MgO-1 had a bactericidal activity on Escherichia coli (6 log in 1 h), and showed a decrease of almost 3 log on a Staphylococcus aureus population in 3 h. MgO-2 caused a decrease of 2 log of a E.coli culture but had no activity against S. aureus. Neither of these two products had an activity on Bacillus subtilis spores. Analytical investigations showed that the real sizes of MgO nanoparticles were 11 nm for MgO-1 and 25 nm for MgO-2. Moreover, their crystalline structures were different. These results highlighted the importance of the size of the nanoparticles and their microscopic arrangements to detoxify chemical products and to inhibit or kill microbial strains.

  9. Visible light photo catalytic inactivation of bacteria and photo degradation of methylene blue with Ag/TiO2 nanocomposite prepared by a novel method.

    Science.gov (United States)

    Tahir, Kamran; Ahmad, Aftab; Li, Baoshan; Nazir, Sadia; Khan, Arif Ullah; Nasir, Tabassum; Khan, Zia Ul Haq; Naz, Rubina; Raza, Muslim

    2016-09-01

    Water purification is one of the worldwide problem and most of the conventional methods are associated with a number of drawbacks. Therefore it is the need of the day to develop new methods and materials to overcome the problem of water purification. In this research work we present a simple and green approach to synthesize silver decorated titanium dioxide (Ag/TiO2) nanocomposite with an efficient photo catalytic activities. Phytochemicals of the Cestrum nocturnum leaf extract were used to synthesize silver nanoparticles (AgNPs), Titanium dioxide (TiO2) and Ag/TiO2 nanocomposite. To confirm the formation, crystal structure, particle size and shape of green synthesized nanoparticles and nanocomposite, they were characterized by UV-visible spectroscopy (UV-vis), X-ray diffraction spectroscopy (XRD), high resolution transmission electron microscopy (HRTEM), Scanning electron microscopy (SEM) and Fourier transform infrared spectroscopy (FT-IR). The AgNPs, TiO2 and Ag/TiO2 were evaluated for photo degradation of methylene blue (MB) and photo inhibition of Bacteria. The bio-synthesized Ag/TiO2 nanocomposite was observed to have strong catalytic activities for photo reduction of MB and photo inactivation of bacteria as compared to bare AgNPs and TiO2. In the presence of Ag/TiO2, 90% of MB was degraded only in 40min of irradiation. Alternatively the bare AgNPs and TiO2 degraded less than 30% and 80% respectively of MB even in more than 100min of irradiation. Similarly the Ag/TiO2 has very strong photo inhibition efficiency towards Escherichia coli and Pseudomonas aeruginosa. The zone of inhibition of irradiated Ag/TiO2 nanocomposites against E. coli and P. aeruginosa was 19mm and 17mm respectively which was two times higher than in dark. These promising photocatalytic activities of nanocomposite may be due to the highly decorated AgNPs over the surface of TiO2.

  10. 壬基酚降解菌的分离筛选及其降解条件的优化%Isolation, screening of NP-degrading bacteria and the optimization of degradation conditions

    Institute of Scientific and Technical Information of China (English)

    马娟; 杨芬; 唐玉斌; 陈芳艳; 王新刚

    2015-01-01

    In order to effectively control the NP-polluted water and enrich microbial resources of NP-degrading bacteria, two bacterial strains were isolated from the landfill leachate.The two NP-degrading bacteria, designat-ed strains SLY7 and SLY8.The morphology observation and 16S rDNA identification revealed that the two strains belonged to Pseudomonas stutzeri and Leclercia adecarboxylata, respectively.By shaking flasks tests, the effects of the conditions of degradation of NP by the strains was studied.SLY7 was determined that the optimum condi-tions were inoculum amount 3%, pH 8.0, and 30℃, on a shaker at 120 rpm for 3 d.Under these conditions, when the initial concentration was 10 mg/L, the degrading rate of NP reached 72.83%.SLY8 was determined that the optimum conditions were inoculum amount 5%, pH 7.0, and 35℃, on a shaker at 120 rpm.Under these conditions, the duration was 3 d, when the initial concentration was 5 mg/L, the degrading rate of NP reached 64.43%.%为了有效地对壬基酚( NP)污染水环境进行生物修复,丰富高效降解NP的微生物资源,从垃圾填埋场的垃圾渗滤液中,分离得到两株NP高效降解菌SLY7和SLY8,根据菌落的形态特征和16S rDNA序列分析,初步鉴定SLY7为施氏假单胞菌( Pseudomonas stutzeri) ,SLY8为非脱羧勒克菌( Leclercia adecarboxylata) .通过摇瓶实验考察NP的初始浓度、pH、温度以及投菌量等因素对菌株降解NP能力的影响.结果表明:菌株SLY7的最佳降解条件为温度30℃,pH为8.0,接种量3%( V/V),振荡速率120 r/min,在此条件下,历时3 d,对初始浓度为10 mg/L的NP的降解率可达72.83%;菌株SLY8的最佳降解条件为温度35℃,pH为7.0,接种量5%(V/V),振荡速率120 r/min,在此条件下,历时3 d,对初始浓度为5 mg/L的NP的降解率可达64.43%.

  11. Protective effect of immobilized ammonia oxidizers and phenol-degrading bacteria on nitrification in ammonia- and phenol-containing wastewater

    Energy Technology Data Exchange (ETDEWEB)

    Morita, M.; Watanabe, A. [Environmental Science Research Laboratory, Central Research Institute of Electric Power Industry (CRIEPI), Chiba (Japan); Kudo, N.; Shinozaki, H. [Materials Science Engineering, Tokyo Denki University, Tokyo (Japan); Uemoto, H.

    2007-12-15

    Phenol present in wastewaters from various industries has an inhibitory effect on nitrification even at low concentrations. Hence, the biological treatment of wastewater containing both phenol and ammonia involves a series of treatment steps. It is difficult to achieve nitrification capability in an activated sludge system that contains phenol at concentrations above the inhibitory level. Batch treatment of wastewater containing various concentrations of phenol showed that the ammonia oxidation capability of suspended Nitrosomonas europaea cells, an ammonia oxidizer, was completely inhibited in the presence of more than 5.0 mg/L phenol. To protect the ammonia oxidizer from the inhibitory effect of phenol and to achieve ammonia oxidation capability in the wastewater containing phenol at concentrations above the inhibitory level, a simple bacterial consortium composed of an ammonia oxidizer (N. europaea) and a phenol-degrading bacterial strain (Acinetobacter sp.) was used. Ammonia oxidation did not occur in the presence of phenol at concentrations above the inhibitory level when suspended or immobilized N. europaea and Acinetobacter sp. cells were used in batch treatment. Following the acclimatization of the immobilized cells, accumulation of nitrite was observed, even when the wastewater contained phenol at concentrations above the inhibitory level. These results showed that immobilization was effective in protecting N. europaea cells from the inhibitory effect of phenol present in the wastewater. (Abstract Copyright [2007], Wiley Periodicals, Inc.)

  12. The screening and identification of oil degradation bacteria producing surfactant%产表面活性剂石油降解菌株的筛选及鉴定

    Institute of Scientific and Technical Information of China (English)

    花莉; 洛晶晶; 胡阳阳; 彭香玉; 贾卫华

    2014-01-01

    7 strains degrading oil were isolated from long-term oil-contaminated soil and they were numbered as bacteria 2-1 ,bacteria 7-1 ,bacteria 1-2 ,bacteria5-2 ,bacteria 7-2 ,bacteria oil 3 ,bacteria oil 5 ,of which bacteria 2-1 and bacteria 7-1 were identified as Serratia marces-cens ,bacteria 1-2 as Raoultella planticola ,bacteria 5-2 ,bacteria oil 3 ,and bacteria oil 5 as Klebsiella genus ,bacteria 7-2 as Bacillus cereus by morphological observation ,Biolog identi-fication and 16S rDNA gene sequence analysis .Bacteria 1-2 ,bacteria 5-2 and bacteria 7-2 en-abled the surface tension of the fermentation liquid reduce from 36 .1 mN /m to 20 .2 mN /m ,20 .74 mN /m and 21 .78 mN/m ,indicating the surfactants produced by the bacteriums have a strong emulsification crude capacity and show great potential .%从长期受油污的土壤中分离得到了7株降解石油类菌株,其编号分别为菌2-1、菌7-1、菌1-2、菌5-2、菌7-2、菌油3及菌油5.经形态观察、Biolog鉴定和16S rDNA 基因序列分析,可鉴定菌2-1和菌7-1为粘质沙雷氏菌,菌1-2为居植物柔武氏菌,菌5-2、菌油3和菌油5都为克雷伯氏菌属,菌7-2为蜡状芽孢杆菌.其中,菌1-2、菌5-2和菌7-2能使发酵液的表面张力从36.10 m N/m降低至20.20 m N/m、20.74 m N/m、21.78 m N/m ,表明这些菌所产生的表面活性剂能具有较强的乳化原油的能力,展现了较大的应用前景.

  13. Effect of pH on biologic degradation of Microcystis aeruginosa by alga-lysing bacteria in sequencing batch biofilm reactors

    Institute of Scientific and Technical Information of China (English)

    Hongjing LI; Mengli HAO; Jingxian LIU; Chen CHEN1; Zhengqiu FAN; Xiangrong WANG

    2012-01-01

    In this paper, the effect of pH on biological degradation of Microcystis aeruginosa by alga-lysing bacteria in laboratory-scale sequencing batch biofilm reactors (SBBRs) was investigated. After 10 d filming with waste activated sludge, the biological film could be formed, and the bioreactors in which laid polyolefin resin filler were used to treat algal culture. By comparing the removal efficiency of chlorophyll a at different aerobic time, the optimum time was determined as 5 h. Under pH 6.5, 7.5, and 8.5 conditions, the removal rates of Microcystis aeruginosa were respectively 75.9%, 83.6%, and 78.3% (in term of chlorophyll a), and that of Chemical Oxygen Demand (CODMn) were 30.6%, 35.8%, and 33.5%. While the removal efficiencies of ammonia nitrogen (NH+ -N) were all 100%. It was observed that the sequence of the removal efficiencies of algae, NH+ -N and organic matter were pH 7.5 〉 pH 8.5 〉 pH 6.5. The results showed that the dominant alga-lysing bacteria in the SBBRs was strain HM-01, which was identified as Bacillus sp. by Polymerase Chain Reaction (PCR) amplification of the 16S rRNA gene, Basic Local Alignment Search Tool (BLAST) analysis, and compar- ison with sequences in the GenBank nucleotide database. The algicidal activated substance which HM-01 strain excreted could withstand high temperature and pressure, also had better hydrophily and stronger polarity.

  14. Bioreporter bacteria for landmine detection

    Energy Technology Data Exchange (ETDEWEB)

    Burlage, R.S. [Oak Ridge National Lab., TN (United States); Youngblood, T. [Frisby Technologies, Aiken, SC (United States); Lamothe, D. [American Technologies, Inc., Huntsville, AL (United States). Ordnance/Explosives Environmental Services Div.

    1998-04-01

    Landmines (and other UXO) gradually leak explosive chemicals into the soil at significant concentrations. Bacteria, which have adapted to scavenge low concentrations of nutrients, can detect these explosive chemicals. Uptake of these chemicals results in the triggering of specific bacterial genes. The authors have created genetically recombinant bioreporter bacteria that detect small concentrations of energetic chemicals. These bacteria are genetically engineered to produce a bioluminescent signal when they contact specific explosives. A gene for a brightly fluorescent compound can be substituted for increased sensitivity. By finding the fluorescent bacteria, you find the landmine. Detection might be accomplished using stand-off illumination of the minefield and GPS technology, which would result in greatly reduced risk to the deminers. Bioreporter technology has been proven at the laboratory scale, and will be tested under field conditions in the near future. They have created a bacterial strain that detects sub-micromolar concentrations of o- and p-nitrotoluene. Related bacterial strains were produced using standard laboratory protocols, and bioreporters of dinitrotoluene and trinitrotoluene were produced, screening for activity with the explosive compounds. Response time is dependent on the growth rate of the bacteria. Although frill signal production may require several hours, the bacteria can be applied over vast areas and scanned quickly, producing an equivalent detection speed that is very fast. This technology may be applicable to other needs, such as locating buried explosives at military and ordnance/explosive manufacturing facilities.

  15. 降解菌DNEH-S1的室内模拟试验%Indoor Simulation Examination of Degradation Bacteria DNEH - S1

    Institute of Scientific and Technical Information of China (English)

    张奇

    2016-01-01

    农业生产中广泛使用的农药、地膜、化肥等农用化学品,造成多种有机物对土壤的复合污染。当有害物质过多,超过土壤的自净能力,就会引起土壤的组成、结构和功能发生变化,微生物活动受到抑制,有害物质或其分解产物在土壤中逐渐积累,并间接危害人体健康。邻苯二甲酸酯(PAEs)是一类环境内分泌物质,作为农用塑料地膜中的增塑剂被大量使用,易从塑料地膜中释放而造成土壤污染。我国农田土壤普遍存在农药、PAEs等有机物复合污染,生物降解是削减土壤中有机污染物的重要途径。试验研究了降解菌DNEH-S1在土壤中对DEHP降解特性及土壤中养分的动态变化,探讨了典型有机物复合污染土壤生物降解技术的可行性。%Phthalic acid esters (PAEs) is a kind of environmental endocrine substances that is widely used as the plas-ticizer in the farming-use plastic iflm, easy to release from the plastic iflm and cause soil polution. Farmland soils commonly show pesticides, PAEs and other organic compound polution in China and biodegradation is an important approach to cut down organic polutants in soil. This experiment studies the degradation bacteria DNEH - S1 in the soil of DEHP degradation charac-teristics and the dynamic changes of the nutrients in the soil, discussing the bio-degradation technology feasibility of typical organic compound contaminated soil.

  16. Experimental research on the dominant degradation bacteria in molasses alcohol wastewater%糖蜜酒精废液优势降解菌群试验研究

    Institute of Scientific and Technical Information of China (English)

    刘建福; 李青松

    2015-01-01

    Dominant bacterial strains have been screened out from UASB reactor granular sludge which was used in the treatment of molasses alcohol wastewater,and the ecological niche,metabolic products,and degradation capacity of dominant bacteria are studied. The results show that the compound florae ,which consist of dominant strains ,have wide ecological niches. In different niches ,compound florae have corresponding dominant strains. The compound flore have the diversity and stability of niches. Compound florae can accommodate the changes of external conditions by adjusting metabolic products,and make the external environment move gradually to the niche that is suitable for florae. The degradation conditions suitable for compound florae have been obtained through the research on the ef-fects of ecological factors,such as temperature,COD and pH on the degradation capacity of compound florae,laying foundations for the application of dominant florae.%从处理糖蜜酒精废液的UASB反应器颗粒污泥中筛选出优势菌株,并对优势菌的生态位、代谢产物及降解性能进行了研究. 结果显示,优势菌种组成的复合菌群有很宽的生态位,且在不同的生态位都有相应的优势菌种,具有生态位的多样性和稳定性;复合菌群能通过调节代谢产物适应外界条件的改变,并逐渐使外界环境向菌群适宜的生态位迁移. 通过温度、COD、pH等生态因子对复合菌群降解性能影响的研究,得出了复合菌群适宜的降解条件,为优势菌群的应用奠定了基础.

  17. Screenmg and Identification of High Efficiency Oil Degrading Bacteria%高效油脂降解菌的筛选与鉴定

    Institute of Scientific and Technical Information of China (English)

    罗跃中; 兰立新; 李忠英; 吴永尧

    2012-01-01

    [目的]筛选并鉴定高效油脂降解菌。[方法]采用富集分离法从食堂下水道口的污泥、污水池、油脂加工厂和发霉菜籽饼中分离出8株具有油脂降解能力的菌种,经复筛最终得到1株降解油脂能力较高的菌株,通过从菌株形态和生理生化特征进行鉴定。[结果]菌株CS-4的初始酶活力为10 U/mL,在牛肉膏蛋白胨固体培养基上表面光滑,单菌落,湿润,革兰氏阳性杆菌,有运动性,好氧,葡萄糖发酵产酸,初步确定该菌为芽孢杆菌属。[结论]该研究为在油脂下脚料及油脂污染中采用生物降解提供一定的理论依据。%[Objective] The aim was to screen and identify high effieieney oil degrading bacteria. [Method] 8 strains that had good degradation on oil were isolated from the mud of canteen outtall,sewage tank, oil processing and mildew rapeseed meal by enrichment euhure. Through secondary screening, 1 strain that could effectively degrade oil was obtained finally. Morphological, physiologieal and biochemical characteristics were used to identify strain. [llesult] The initial enzyme activity of the strain CS-4 was 10 U/mL. The physiological and biochemical characteristics of the strain CS-4 were surfaee smooth on beef extraet peptone solid medium, single colony, wetting, gram-positive bacilli, with sports, aerobic and fermentation of glucose. [Conclusion] This study provide theoretical basis for solving grease waste and oil pollution with method of biodegradation.

  18. Isolation of Soil Bacteria Species for Degrading Dibenzothiophene%用于降解硫芴的土壤菌种的分离

    Institute of Scientific and Technical Information of China (English)

    姜成英; 刘会洲; 谢渝春; 陈家镛

    2002-01-01

    Five bacterial strains, which are able to grow and to disintegrate dibenzothiophene (DBT) and dibenzothiophene sulfone (DBTO2) in fossil fuels, are isolated. Analysis of products of DBT metabolized by these strains shows that different bacteria strains oxidize DBT by different pathways. The isolated strains R-6, R-16, R-9 and R-8 can metabolize DBT to DBTO2 and 2-hydroxybiphenyl (HBP), which are identified as Bacillus brevis, Bacillus sphaericus, Nocardia globerula and Pseudomonas delafieldii respectively. Another strain R-12 identified as Pseudomonas sp. can degrade DBT completely but it cannot produce DBTO2 and HBP. The optimum temperature and initial pH for desulfurization by R-8 are 32℃ and 7.02 respectively and pH of the broth decreases during biodegradation. The growth of strain R-8 with different sulfur-sources indicates that this strain in DBT medium has an induction period of 3 days, which is longer than those with dimethylsulfoxide and MgSO4 media, but the growth rate of the bacterial strain in DBT is higher after the induction. Higher growth and desulfurization rates are observed in the DBT-hexadecane system than in both DBT-ethanol and DBT-dimethylformamide systems. Both strains of R-8 and R-9 also show higher desulfurization activities toward other sulfur-substrates, indicating that they have greater desulfurization potential in application.

  19. Influence of an aerobic fungus grown on solid culture on ruminal degradability and on a mixture culture of anaerobic cellulolytic bacteria.

    Science.gov (United States)

    Hernández-Díaz, R; Pimentel-González, D J; Figueira, A C; Viniegra-González, G; Campos-Montiel, R G

    2010-06-01

    In this work, the effect of a solid fungal culture of Aspergillus niger (An) grown on coffee pulp on the in situ ruminal degradability (RD) of corn stover was evaluated. In addition, the effect of its extracts on the in vitro dry matter disappearance (IVDMD) and on a mixed culture of anaerobic cellulolytic bacteria (MCACB) was also investigated. The solid ferment was a crude culture of An, grown on coffee pulp. Regarding in situ RD, a significant difference (p < 0.05) was found between treatment with 200 g/day of the solid culture and control (no solid culture added) on dry matter, crude protein and neutral detergent fibre on RD. All the water extracts (pH 4, 7 and 10) enhanced IVDMD and stimulated the cellulolytic activity on a MCACB. Ultrafiltration results showed that active compounds with a molecular weight lower than 30 kDa were responsible for the effect on MCACB. Such results suggest that the effects of the solid An culture in RD are related to the presence of water soluble compounds having a molecular weight lower than 30 kDa.

  20. Explosive Pleuritis

    Directory of Open Access Journals (Sweden)

    Jasdeep K Sharma

    2001-01-01

    Full Text Available The objective of the present paper is to describe the clinical and computed tomography features of 'explosive pleuritis', an entity first named by Braman and Donat in 1986, and to propose a case definition. A case report of a previously healthy, 45-year-old man admitted to hospital with acute onset pleuritic chest pain is presented. The patient arrived at the emergency room at 15:00 in mild respiratory distress; the initial chest x-ray revealed a small right lower lobe effusion. The subsequent clinical course in hospital was dramatic. Within 18 h of admission, he developed severe respiratory distress with oxygen desaturation to 83% on room air and dullness of the right lung field. A repeat chest x-ray, taken the morning after admission, revealed complete opacification of the right hemithorax. A computed tomography scan of the thorax demonstrated a massive pleural effusion with compression of pulmonary tissue and mediastinal shift. Pleural fluid biochemical analysis revealed the following concentrations: glucose 3.5 mmol/L, lactate dehydrogenase 1550 U/L, protein 56.98 g/L, amylase 68 U/L and white blood cell count 600 cells/mL. The pleural fluid cultures demonstrated light growth of coagulase-negative staphylococcus and viridans streptococcus, and very light growth of Candida albicans. Cytology was negative for malignant cells. Thoracotomy was performed, which demonstrated a loculated parapneumonic effusion that required decortication. The patient responded favourably to the empirical administration of intravenous levofloxacin and ceftriaxone, and conservative surgical methods in the management of the empyema. This report also discusses the patient's rapidly progressing pleural effusion and offers a potential case definition for explosive pleuritis. Explosive pleuritis is a medical emergency defined by the rapid development of a pleural effusion involving more than 90% of the hemithorax over 24 h, which causes compression of pulmonary tissue and

  1. Explosive Pleuritis

    Directory of Open Access Journals (Sweden)

    Satish Kumar

    2012-01-01

    Full Text Available Pleural effusions associated with pneumonia (parapneumonic effusions are one of the most common causes of exudative pleural effusions in the world. Approximately 20 to 40% of patients hospitalized with pneumonia will have an accompanying pleural effusion. The term 'Explosive pleuritis' was originally described by Braman and Donat in 1986 as pleural effusions developing within hours of admission. We report a 38 years old male patient with minimal pleural effusion which progressed rapidly within one day to involve almost whole of the hemithorax. There were multiple loculations on ultrasonography of thorax. Pleural fluid was sero-sanguinous and revealed gram positive diplococcic. The patient improved with antibiotics and pigtail catheter drainage.

  2. Leidenfrost explosions

    CERN Document Server

    Moreau, F; Dorbolo, S

    2012-01-01

    We present a fluid dynamics video showing the behavior of Leidenfrost droplets composed by a mixture of water and surfactant (SDS, Sodium Dodecyl sulfate). When a droplet is released on a plate heated above a given temperature a thin layer of vapor isolates the droplet from the plate. The droplet levitates over the plate. This is called the Leidenfrost effect. In this work we study the influence of the addition of a surfactant on the Leidenfrost phenomenon. As the droplet evaporates the concentration of SDS rises up to two orders of magnitude over the Critical Micelle Concentration (CMC). An unexpected and violent explosive behavior is observed. The video presents several explosions taken with a high speed camera (IDT-N4 at 30000 fps). All the presented experiments were performed on a plate heated at 300{\\deg}C. On the other hand, the initial quantity of SDS was tuned in two ways: (i) by varying the initial concentration of SDS and (ii) by varying the initial size of the droplet. By measuring the volume of th...

  3. Isolation of Paraquat Degrading Bacteria and Identification of Degradation Characteristics%百草枯降解菌的分离鉴定及降解特性研究

    Institute of Scientific and Technical Information of China (English)

    韩欣; 袁瑞; 王国强; 张韩杰

    2014-01-01

    从沾化百草枯污染土壤中富集、筛选、分离出3株具有百草枯降解能力的菌株,进一步研究了这3株优势菌的生理生化特征及最佳生长条件。通过形态学观察和生理生化指标的测定,对这3株菌种进行鉴定,初步确定:BCK-1为颤螺菌属,BCK-2为梭菌属,BCK-3为芽孢盐杆菌属。这3株菌株在37℃培养3d后,发现这3株菌株(BCK-1,BCK-2,BCK-3)对百草枯的降解率分别为79.35%、80.26%和86.22%。3株优势菌种可应用于受百草枯污染的菌源土壤的生物恢复。%Three strains were isolated from the Zhanhua paraquat contaminated soil,and optimal growth con-ditions were further studied on the physiological and biochemical characteristics of the three dominant bac-teria. The Determination by morphological observation,physiological and biochemical indicators were identi-fied,these three strains are initially identified BCK-1 Oscillosporia Chatton&Perard,BCK-2 for Clostridium Prazmowski,BCK-3 Sporohalobacter Orenetal. These three strains at 37℃ after 3d found three strains (BCK-1,BCK-2,BCK-3)and the degradation rate of paraquat were 79.35%,80.26% and 86.22%,respective-ly. The three dominant strain can be applied to paraquat contaminated bacteria source soil biological recov-ery.

  4. Co-metabolic biodegradation of trichloroethylene by acclimated phenol degrading bacteria%三氯乙烯在苯酚菌中的共代谢降解性能研究

    Institute of Scientific and Technical Information of China (English)

    黄流雅; 胡娟; 张巍; 应维琪

    2012-01-01

    The batch experiments were carried out to investigate the co-metabolic degradation of trichloroethylene (TCE) by acclimated phenol degrading bacteria. The results showed that phenol was an essential co-substrate;the TCE degradation rate was dependent on the initial concentrations of phenol and TCE in co-metabolic degradation system. Active biodegradation of TCE followed after a short lag phase for building up a critical density of acclimated phenol degrading bacteria. A high initial TCE concentration of >9 mg/L inhibited its degradation;an initial phenol/TCE ratio of > 10-15 enhanced the final removal of TCE. The degradation curves of phenol and TCE were well represented by the Haldane inhibition model. The mixed culture bacteria had a higher affinity for phenol than TCE; phenol had competitive inhibition effect on TCE degradation;the inhibition effect of TCE to bacteria was observed in the high initial concentration runs.%通过生物降解实验考察三氯乙烯(TCE)在苯酚驯化微生物中的共代谢降解性能,并进行动力学分析.结果表明,苯酚是TCE苯酚共代谢过程必不可少的共代谢基质;TCE的共代谢降解与苯酚和TCE初始浓度有关.TCE在降解初期会出现一个短暂的迟滞期,TCE的大量降解要在苯酚被利用后才发生;高质量浓度TCE (>9 mg/L)对共代谢降解有抑制作用.苯酚/TCE(质量比)在10~15以上时,苯酚菌对TCE的去除率较大.Haldane模型能够很好地拟合苯酚和TCE的比降解速率.动力学分析表明,微生物对苯酚的亲和力要大于TCE,苯酚对TCE共降解具有竞争性抑制作用,TCE对微生物存在毒性抑制作用;结果证实了生物降解实验的结论.

  5. 土壤中降解烟碱细菌多样性研究%Analysis of diversity of nicotine-degrading bacteria isolated from soil

    Institute of Scientific and Technical Information of China (English)

    刘飞; 夏振远; 白江兰; 陈泽斌; 雷丽萍; 杨根华; 陈海如

    2012-01-01

    302 bacteria strains were isolated by mineral salt medium supplemented with 0. 1% nicotine as sole carbon and nitrogen sources from 59 soil samples from Puer, Yuxi, Qujing, Chuxiong and Dali districts in Yunnan province. Based on sequence analysis of 16S rDNA, 302 strains were grouped into four phyla, i. e. , Firmicutes, Actinobacteria, Protcobacteria and Bacteroidetes, and were further clustered into 15 genera; Arthrobactcr, Bacillus, Paenibacillus, Micro-coccus, Cellulomonas, Pseudomonas, Brachybaclerium, Rhizobium, Sinorhizobium, Agrobacterium, Acinetobacter, En-sifer, Janibacter, Sphingobacterium and Balneimonas. Results showed that Arthrobacter, Bacillus and Paenibacillus were the dominant nicotine-degrading bacteria groups.%为了解烟草根围土壤中可降解烟碱细菌的多样性,采用0.1%的烟碱为唯一碳源和氮源的无机盐培养基,从云南省普洱、玉溪、曲靖、楚雄、大理五个地区59个土样中分离得到302株降解烟碱细菌;16S rDNA序列分析结果表明,302株菌分属厚壁菌门(Firmicutes)、放线菌门(Actinobacteria)、变形菌 门(Proteobacteria)和拟杆菌门(Bacteroidetes)四大类群,分别与数据库中已知的节杆菌属(Arthrobacter)、芽孢杆菌属(Bacillus)、类芽孢杆菌属(Paenibacillus)、微球菌属(Micrococcus)、纤维单胞菌属(Cellulomonas)、假单胞菌属(Pseudomonas)、短状杆菌属(Brachybacterium)、根瘤菌属(Rhizobium)、中华根瘤菌属(Sinorhizobium)、土壤杆菌属(Agrobacterium)、不动杆菌属(Acinetobacter)、剑菌属(Ensifer)、两面神菌属(Janibacter)、鞘脂杆菌属(Sphingobacterium)、Balneimonas具有较高的相似性.其中节杆菌属、芽孢杆菌属和类芽孢杆菌属为土壤中降解烟碱细菌的优势菌属.

  6. Isolation, Screening and Identification of Prometryne-Degrading Bacteria and Their Degrading Characteristics%扑草净降解菌的分离、筛选与鉴定及降解特性初步研究

    Institute of Scientific and Technical Information of China (English)

    周际海; 孙向武; 胡锋; 李辉信

    2013-01-01

    从安徽农药厂废水处理系统的活性污泥中筛选扑草净(prometryne)降解菌.通过富集驯化和选择性培养筛选纯化细菌,分离到2株细菌,分别命名为P-1、P-2.根据表型特征、生理生化特性和16S rDNA序列同源性分析:P-1为G-,鉴定为苍白杆菌属(Ochrobactrum);P-2为G+,鉴定为芽胞杆菌属(Bacillus).GenBank登录号分别为HM004554和HM004555.通过12d液体降解实验,菌株P-1、P-2对40 mg·L-1扑草净降解率分别达到46.5%和65.4%.该研究为扑草净的生物降解与污染土壤的生物修复提供了依据.%The purpose of this study was to develop some bacterial strains that could degrade prometryne effectively.Bacteria were screened and purified from sediments of a pesticide plant with the method of domestication with gradient concentrations.Two strains were isolated and named P-1 and P-2, respectively.According to their morphology, physiological, biochemical properties and the analysis of their 16S rRNA gene sequences, the strain P-1 is Gram negative and identified as Ochrobactrum; the strain P-2 is Gram positive and identified as Bacillus.GenBank Accession numbers are HM004554 and HM004555, respectively.Degradation rates of the strains P-1 and P-2 for prometryne concentration with 40 mg-L-1 were 46.5% and 65.4% after 12 days in the liquid culture experiment, respectively.This study provides an essential material and theoretical foundation for the remediation of prometryne contaminated soils.

  7. Explosive Formulation Pilot Plant

    Data.gov (United States)

    Federal Laboratory Consortium — The Pilot Plant for Explosive Formulation supports the development of new explosives that are comprised of several components. This system is particularly beneficial...

  8. Chaotic Explosions

    CERN Document Server

    Altmann, Eduardo G; Tél, Tamás

    2015-01-01

    We investigate chaotic dynamical systems for which the intensity of trajectories might grow unlimited in time. We show that (i) the intensity grows exponentially in time and is distributed spatially according to a fractal measure with an information dimension smaller than that of the phase space,(ii) such exploding cases can be described by an operator formalism similar to the one applied to chaotic systems with absorption (decaying intensities), but (iii) the invariant quantities characterizing explosion and absorption are typically not directly related to each other, e.g., the decay rate and fractal dimensions of absorbing maps typically differ from the ones computed in the corresponding inverse (exploding) maps. We illustrate our general results through numerical simulation in the cardioid billiard mimicking a lasing optical cavity, and through analytical calculations in the baker map.

  9. Novel mechanisms of biotransformation of p-tert-amylphenol by bacteria and fungi with special degradation abilities and simultaneous detoxification of the disinfectant.

    Science.gov (United States)

    Schlueter, Rabea; Röder, Anja; Czekalski, Nadine; Gliesche, Daniel; Mikolasch, Annett; Schauer, Frieder

    2014-01-01

    The compound p-tert-amylphenol (p-(1,1-dimethylpropyl)phenol) is a widely used disinfectant belonging to the group of short branched-chain alkylphenols. It is produced in or imported into the USA with more than one million pounds per year and can be found in the environment in surface water, sediments, and soil. We have investigated for the first time the biotransformation of this disinfectant and the accumulation of metabolites by five bacterial strains, three yeast strains, and three filamentous fungi, selected because of their ability to transform either aromatic or branched-chain compounds. Of the 11 microorganisms tested, one yeast strain and three bacteria could not transform the disinfectant despite of a very low concentration applied (0.005%). None of the other seven organisms was able to degrade the short branched alkyl chain of p-tert-amylphenol. However, two yeast strains, two filamentous fungi, and two bacterial strains attacked the aromatic ring system of the disinfectant via the hydroxylated intermediate 4-(1,1-dimethyl-propyl)-benzene-1,2-diol resulting in two hitherto unknown ring fission products with pyran and furan structures, 4-(1,1-dimethyl-propyl)-6-oxo-6-H-pyran-2-carboxylic acid and 2-[3-(1,1-dimethyl-propyl)-5-oxo-2H-furan-2-yl]acetic acid. While the disinfectant was toxic to the organisms applied, one of the ring cleavage products was not. Thus, a detoxification of the disinfectant was achieved by ring cleavage. Furthermore, one filamentous fungus formed sugar conjugates with p-tert-amylphenol as another mechanism of detoxification of toxic environmental pollutants. With this work, we can also contribute to the allocation of unknown chemical compounds within environmental samples to their parent compounds.

  10. Measurement of Growth of Tylosin-Degrading Bacteria by Conductometer%利用电导率仪法检测泰乐菌素高效降解菌的生长量

    Institute of Scientific and Technical Information of China (English)

    谢丽; 孙瑞珠; 马玉龙; 李俊莲

    2012-01-01

    离心收集泰乐菌素降解菌,超声破碎菌体后,测定不同浓度菌液的电导率值.结果表明,完全破碎后的菌液电导率值与细胞干重存在良好的线性关系,线性系数(R2=0.999 8),该方法能快速、准确地分析泰乐菌素降解菌的生长量.%Liquid bacteria culture of Tylosin-degrading bacteria was collected by centrifuging, and then blended by ultrasonic wave. The conductivity of bacteria solution with different concentration was measured by conductmeter. The results indicated that there was a perfect linear relationship between the cell conductivity and its dry weight, the correlation coefficient R2= 0.999 8. In a conclusion, it was a rapid and accurate method for analyzing the growth of tylosin-degrading bacteria.

  11. 一个硫酸盐还原细菌富集物对丁草胺的厌氧降解%Anaerobic degradation of butachlor by sulfate-reducing bacteria enrichment culture

    Institute of Scientific and Technical Information of China (English)

    叶央芳; 杜宇峰

    2000-01-01

    An enrichment culture of sulfate-reducing bacteria,capable of anaerabic degrading butachlor,was obtained.The degradation kinetics of butachlor by the enrichment culture was determined and the optimum concentration of butachlor,the optimum pH and temperature for degradation of butachlor were observed..%通过多次富集培养,得到一个能有效厌氧降解丁草胺的硫酸盐还原细菌(SRB)富集物,并对该富集物的生长动力学以及生长的最适丁草胺浓度、最适pH和最适温度作了探讨.

  12. 大连湾原油降解菌的分离和多样性分析%Isolation and diversity of crude oil-degrading bacteria from Dalian Bay

    Institute of Scientific and Technical Information of China (English)

    信艳娟; 吴佩春; 曹旭鹏; 薛松

    2013-01-01

    [目的]研究大连湾原油污染海域可培养原油降解菌的多样性,并获得新的原油降解菌.[方法]通过大连湾海水、海泥和海绵样品采集,以原油作为唯一碳源,培养、富集、分离筛选原油降解菌,根据16S rRNA基因序列确定其系统进化地位.[结果]通过形态观察和16S rRNA基因分析,共获得22个属的50株菌.其中,有6株菌的16S rRNA序列与最相近的菌株序列一致性仅为95%-97%,可能是潜在的新菌.单菌实验表明,45株菌具有石油降解能力.[结论]揭示了大连湾可培养原油降解菌的多样性,并获得了新的原油降解菌,为海洋石油污染的生物治理提供新资源.%[Objective] In order to investigate the diversity of crude oil-degrading bacteria in the seawater,mud and sponge samples from Dalian Bay,and obtain new oil-degrading bacteria.[Methods] Crude oil was used as sole carbon source to enrich and isolate the potential oil-degrading bacteria from samples of seawater,mud or sponge.Phylogenetic analysis was conducted by 16S rRNA gene sequences of the bacteria.[Results] After screening via morphological and 16S rRNA gene sequences analysis 50 strains belonging to 22 genera were obtained.Among them,6 strains shared 16S rRNA gene sequence identities of 95%-97% with the most similar strains,were speculated new species.Further experiments revealed oil-degrading capability of 45 strains.[Conclusion] This study demonstrated a high diversity of the cultivable oil-degrading bacteria in Dalian Bay,and obtained new resources in bioremediation of marine oil pollution.

  13. Studies on isolation, identification of crude oil degrading bacteria and its degradation capability%一株原油降解菌的分离鉴定及降解特性研究

    Institute of Scientific and Technical Information of China (English)

    信艳娟; 刘亚男; 吴佩春; 曹旭鹏; 薛松

    2013-01-01

    [目的]对从大连湾原油污染海域生长的海绵中分离的原油降解菌2-9进行鉴定及降解特性研究.[方法]采用16S rRNA基因序列同源性分析、生理生化指标测定、DNAG+C含量测定、全细胞脂肪酸组成测定、碳源利用实验等多种方法对该菌株进行鉴定,并通过降解实验测定其对原油的降解情况.[结果]菌株2-9鉴定为Nitratireductor basaltis,革兰氏阴性,接触酶和氧化酶阳性.在GenBank中与其16S rRNA基因序列相似度最高的模式株为Nitratireductor basaltis J3T,相似性为99%.可生长的pH范围为6.0-10.0,最适生长pH值为8.0;可生长温度范围为15℃-42℃,最适生长温度为30℃; NaCl浓度生长范围是0-8%(W/V),最适生长盐度为2%.该菌株可以利用多种糖和有机酸的碳源,其DNA G+C含量为57.29 mol%,主要脂肪酸组成为ω7c-十八碳单不饱和脂肪酸(63.61%)、ω8c型环式十九碳饱和脂肪酸(16.97%)、饱和十八碳脂肪酸(4.28%)和十六碳饱和脂肪酸(3.39%).同时,考察了该菌株对原油的降解效果,在人工海水培养基中,14d内对原油(初始浓度为1 g/L)的平均降解率为63.5%.[结论]菌株2-9是一株具有开发潜力的原油降解菌.%[Objective] To identify and characterize a crude oil degrading bacteria 2-9 isolated from a crude oil contaminated marine sponge from Dalian Bay, China. [Methods] According to the 16S rRNA genes sequences analysis, physiological and biochemical characterizations, DNA G+C content assaying, determination of cellular fatty acids and testing of carbon sources. Its capability of degrading crude oil was further determined. [Results] The strain 2-9 was identified as Nitratireductor basaltis. Cells are Gram-negative with catalase-positive and oxidase-positive. The similarity between its 16S rRNA gene and that of its most closely related type strain in GenBank Nitratireductor basaltis J3T was 99%. Growth of strain 2-9 occurred with 0-8% (W/V) Na

  14. Understanding vented gas explosions

    Energy Technology Data Exchange (ETDEWEB)

    Lautkaski, R. [VTT Energy, Espoo (Finland). Energy Systems

    1997-12-31

    The report is an introduction to vented gas explosions for nonspecialists, particularly designers of plants for flammable gases and liquids. The phenomena leading to pressure generation in vented gas explosions in empty and congested rooms are reviewed. The four peak model of vented gas explosions is presented with simple methods to predict the values of the individual peaks. Experimental data on the external explosion of dust and gas explosions is discussed. The empirical equation relating the internal and external peak pressures in vented dust explosions is shown to be valid for gas explosion tests in 30 m{sup 3} and 550 m{sup 3} chambers. However, the difficulty of predicting the internal peak pressure in large chambers remains. Methods of explosion relief panel design and principles of vent and equipment layout to reduce explosion overpressures are reviewed. (orig.) 65 refs.

  15. Pentaerythritol tetranitrate (PETN) profiling in post-explosion residues to constitute evidence of crime-scene presence

    NARCIS (Netherlands)

    Brust, H.; Asten, A. van; Koeberg, M.; Heijden, A.E.D.M. van der; Kuijpers, C.-J.; Schoenmakers, P.

    2012-01-01

    Pentaerythritol tetranitrate (PETN) and its degradation products are analyzed to discriminate between residues originating from PETN explosions and residues obtained under other circumstances, such as natural degradation on textile, or after handling intact PETN. The degradation products observed in

  16. Separation of Petroleum Hydrocarbon Degrading Bacteria and its Application in Oily Sludge%石油烃降解菌的分离及在含油污泥中的应用

    Institute of Scientific and Technical Information of China (English)

    姚力芬; 李丹; 陈丽华; 李广彬; 孙盼盼; 李佳酿

    2015-01-01

    文章从甘肃陇东长庆油田污染严重的土壤中分离筛选得到六株石油烃降解菌,分别命名为a1、a2、a3、a4、a5和a6,对它们进行了常规鉴定,得到a1、a2、a3均为芽孢杆菌,a4、a6均为假单胞菌,a5为不动杆菌.通过菌剂的复活、发酵得到降解石油烃复合菌,并进行了微生物修复含油污泥的小试实验.结果表明,当土壤中的石油含量为50g/kg时,加入混合菌剂的石油降解率比没有加菌剂的降解效率高,添加4%菌剂后81d的降解率为90.20%,大于对照组(只添加有机肥)的降解率31.10%,说明该混合菌剂具有应用于实际石油污染土壤生物修复的潜力.%The isolation of six strains of petroleum degrading bacteria from contaminated Gansu Longdong Changqing Oilfield serious soil, which were named as A1, A2, A3, A4, A5 and A6 were carried out routine identification, A1, A2 and A3 were bacillus, A4, A6 were Pseudomonas A5, acinetobacter. Get the degradation of petroleum hydrocarbon compound bacteria through fermentation, resurrection, and carried out experiments of microbial remediation of oily sludge. The results show that when the oil content in soil was 50g/kg, adding oil degrading mixed inoculum rate than the degradation efficiency without inoculum, adding 4% agent 81D degradation rate was 90.20% higher than that of control group (add organic fertilizer) the degradation rate of 31.10%, indicating that the mixed bacteria agent is applied to the actual oil the potential for bioremediation of contaminated soil.

  17. 78 FR 64246 - Commerce in Explosives; List of Explosives Materials

    Science.gov (United States)

    2013-10-28

    ... From the Federal Register Online via the Government Publishing Office ] DEPARTMENT OF JUSTICE Bureau of Alcohol, Tobacco, Firearms, and Explosives Commerce in Explosives; List of Explosives Materials AGENCY: Bureau of Alcohol, Tobacco, Firearms, and Explosives (ATF); Department of Justice. ACTION:...

  18. Cr-resistant rhizo- and endophytic bacteria associated with Prosopis juliflora and their potential as phytoremediation enhancing agents in metal-degraded soils

    OpenAIRE

    Muhammad Umar Khan; Angela eSessitsch; Muhammad eHarris; Kaneez eFatima; Asma eImran; Muhammad eArslan; Ghulam eShabir; Qaiser eKhan; Muhammad eAfzal

    2015-01-01

    Prosopis juliflora is characterized by distinct and profuse growth even in nutritionally poor soil and environmentally stressed conditions and is believed to harbor some novel heavy metal-resistant bacteria in the rhizosphere and endosphere. This study was performed to isolate and characterize Cr-resistant bacteria from the rhizosphere and endosphere of P. juliflora growing on the tannery effluent contaminated soil. A total of 5 and 21 bacterial strains were isolated from the rhizosphere and ...

  19. 75 FR 5545 - Explosives

    Science.gov (United States)

    2010-02-03

    ... storage of explosives incidental to that movement (49 CFR parts 171 to 180 and 397). The Bureau of Alcohol... transporting blasting agents; mixing water gel explosives; storing ammonium nitrate; and storing small...

  20. Cell phone explosion.

    Science.gov (United States)

    Atreya, Alok; Kanchan, Tanuj; Nepal, Samata; Pandey, Bhuwan Raj

    2016-03-01

    Cell phone explosions and resultant burn injuries are rarely reported in the scientific literature. We report a case of cell phone explosion that occurred when a young male was listening to music while the mobile was plugged in for charging.

  1. Photoacoustic Sensing of Explosives

    Science.gov (United States)

    2013-11-01

    NOV 2013 2. REPORT TYPE 3. DATES COVERED 00-00-2013 to 00-00-2013 4. TITLE AND SUBTITLE Photoacoustic Sensing of Explosives 5a. CONTRACT NUMBER...2013www.ll.mit.edu Photoacoustic Sensing of Explosives (PHASE) is a promising new technology that detects trace explosive residues from significant... photoacoustic phenomena resulting from ultraviolet laser excitation. Exposed explosives are excited up to 100 meters away by using PHASE’s

  2. Screening and Identification of Nitrite-Degrading Lactic Acid Bacteria%高效降亚硝酸盐乳酸菌的驯化复筛及菌株鉴定

    Institute of Scientific and Technical Information of China (English)

    吴慧昊; 牛锋; 陈珊珊; 钟琦; 肖俊川

    2016-01-01

    目的:筛选出高效降亚硝酸盐乳酸菌,为今后益生乳酸菌的开发提供一定的理论依据。方法:从地方特有食品及动物肠道中分离纯化出13株乳酸菌,采用盐酸萘乙二胺法对13株乳酸菌的体外降亚硝酸盐能力进行测定,并对降亚硝酸盐效果最强菌株进行驯化培养和抑菌实验,通过生理生化及16S rDNA法对所分离的降亚硝酸盐能力最强菌株进行鉴定。结果:获得1株编号为JS3的乳酸菌,该菌对亚硝酸盐降解率为83.39%,经过驯化复筛及培养条件优化得到:培养基中蛋白胨添加量15 g/L、接菌量5%、培养温度30℃、培养时间48 h,其降解率达到93.47%,同时菌株对金黄色葡萄球菌和枯草芽孢杆菌还具有抑制性能。经鉴定菌株为玉米乳杆菌(Lactobacillus zeae),将其命名为L. zeaeJS3。结论:菌株JS3具有高效降解亚硝酸盐能力,能够成为今后降解亚硝酸盐微生态活性菌的优良菌种。%Objective: To screen nitrite-degrading lactic acid bacteria (LAB), and thus to lay a theoretical foundation for the future development of probiotic lactic acid bacteria. Methods: Totally 13 LAB strains were isolated and purified from unique local foods and animal intestines, and their nitrite-degrading abilities were evaluated by the naphthyl ethylenediamine dihydrochloride spectrophotometric method. Biochemical assays and 16S rDNA sequencing were used to identify the lactic acid bacteria with the highest nitrite-degrading capacity. Results: A nitrite-degrading strain, JS3, was obtained, which was found to be able to degrade 83.39% nitrite. The optimized culture conditions for enhanced nitrite degradation by the selected strain were determined as peptone concentration in medium of 15 g/L, inoculum quantity of 5%, and culture at 30℃ for 48 h, resulting in a degradation rate as high as 93.47%. The strain had obvious antibacterial activity againstStaphylococcus aureus and

  3. Syntrophy in Methanogenic Degradation

    NARCIS (Netherlands)

    Worm, P.; Müller, N.; Plugge, C.M.; Stams, A.J.M.; Schink, B.

    2010-01-01

    This chapter deals with microbial communities of bacteria and archaea that closely cooperate in methanogenic degradation and perform metabolic functions in this community that neither one of them could carry out alone. The methanogenic degradation of fatty acids, alcohols, most aromatic compounds, a

  4. Considering the Specific Impact of Harsh Conditions and Oil Weathering on Diversity, Adaptation, and Activity of Hydrocarbon-Degrading Bacteria in Strategies of Bioremediation of Harsh Oily-Polluted Soils

    Science.gov (United States)

    Al Disi, Zulfa; Jaoua, Samir; Al-Thani, Dhabia; Al-Meer, Saeed

    2017-01-01

    Weathering processes change properties and composition of spilled oil, representing the main reason of failure of bioaugmentation strategies. Our purpose was to investigate the metabolic adaptation of hydrocarbon-degrading bacteria at harsh conditions to be considered to overcome the limitations of bioaugmentation strategies at harsh conditions. Polluted soils, exposed for prolonged periods to weathered oil in harsh soils and weather conditions, were used. Two types of enrichment cultures were employed using 5% and 10% oil or diesel as sole carbon sources with varying the mineral nitrogen sources and C/N ratios. The most effective isolates were obtained based on growth, tolerance to toxicity, and removal efficiency of diesel hydrocarbons. Activities of the newly isolated bacteria, in relation to the microenvironment from where they were isoalted and their interaction with the weathered oil, showed individual specific ability to adapt when exposed to such factors, to acquire metabolic potentialities. Among 39 isolates, ten identified ones by 16S rDNA genes similarities, including special two Pseudomonas isolates and one Citrobacter isolate, showed particularity of shifting hydrocarbon-degrading ability from short chain n-alkanes (n-C12–n-C16) to longer chain n-alkanes (n-C21–n-C25) and vice versa by alternating nitrogen source compositions and C/N ratios. This is shown for the first time. PMID:28243605

  5. Considering the Specific Impact of Harsh Conditions and Oil Weathering on Diversity, Adaptation, and Activity of Hydrocarbon-Degrading Bacteria in Strategies of Bioremediation of Harsh Oily-Polluted Soils

    Directory of Open Access Journals (Sweden)

    Zulfa Al Disi

    2017-01-01

    Full Text Available Weathering processes change properties and composition of spilled oil, representing the main reason of failure of bioaugmentation strategies. Our purpose was to investigate the metabolic adaptation of hydrocarbon-degrading bacteria at harsh conditions to be considered to overcome the limitations of bioaugmentation strategies at harsh conditions. Polluted soils, exposed for prolonged periods to weathered oil in harsh soils and weather conditions, were used. Two types of enrichment cultures were employed using 5% and 10% oil or diesel as sole carbon sources with varying the mineral nitrogen sources and C/N ratios. The most effective isolates were obtained based on growth, tolerance to toxicity, and removal efficiency of diesel hydrocarbons. Activities of the newly isolated bacteria, in relation to the microenvironment from where they were isoalted and their interaction with the weathered oil, showed individual specific ability to adapt when exposed to such factors, to acquire metabolic potentialities. Among 39 isolates, ten identified ones by 16S rDNA genes similarities, including special two Pseudomonas isolates and one Citrobacter isolate, showed particularity of shifting hydrocarbon-degrading ability from short chain n-alkanes (n-C12–n-C16 to longer chain n-alkanes (n-C21–n-C25 and vice versa by alternating nitrogen source compositions and C/N ratios. This is shown for the first time.

  6. Toll-like receptor 4 is not required for the full maturation of dendritic cells or for the degradation of Gram-negative bacteria.

    Science.gov (United States)

    Rescigno, Maria; Urbano, Matteo; Rimoldi, Monica; Valzasina, Barbara; Rotta, Gianluca; Granucci, Francesca; Ricciardi-Castagnoli, Paola

    2002-10-01

    Toll-like receptor 4 (TLR4) has been recently associated with cellular responses to lipopolysaccharide (LPS), and mice mutated in tlr4, such as C57BL/10ScCr or C3H/HeJ mice, become hyporesponsive to LPS. In this study, we have analyzed the capacity of bone marrow-derived dendritic cells (BMDC) from C57BL/10ScCr (ScCr-BMDC) or C3H/HeJ (HeJ-BMDC) mice to respond to LPS or to Gram-negative bacteria. We show that ScCr- or HeJ-BMDC are insensitive to LPS, but can mature in response to live and killed Gram-negative bacteria. Interestingly, only ScCr-BMDC but not HeJ-BMDC, stimulated with bacteria, have reduced capacity to produce pro- and anti-inflammatory cytokines as compared to BMDC from control mice, probably due to genetic defects unrelated to the tlr4 mutation. Nevertheless, ScCr-BMDC and ScCr BM-macrophages (BM-Mphi) phagocytose Salmonella typhimurium similarly to control cells, indicating that TLR4 is not compulsory for bacterial uptake. Moreover, BM-Mphi, but not BM-DC from B10ScCr or C3H/HeJ mice, are impaired in their capacity to kill intracellular bacteria and to produce NO as compared to wild type controls. However, the bacteria killing property of BM-Mphi is completely restored by pretreating the cells with IFN-gamma. Hence, TLR4 plays different roles in DC versus Mphi.

  7. Characterization of N-acylhomoserine lactone-degrading bacteria associated with the Zingiber officinale (ginger rhizosphere: Co-existence of quorum quenching and quorum sensing in Acinetobacter and Burkholderia

    Directory of Open Access Journals (Sweden)

    Chhabra Siri

    2011-03-01

    Full Text Available Abstract Background Cell-to-cell communication (quorum sensing (QS co-ordinates bacterial behaviour at a population level. Consequently the behaviour of a natural multi-species community is likely to depend at least in part on co-existing QS and quorum quenching (QQ activities. Here we sought to discover novel N-acylhomoserine lactone (AHL-dependent QS and QQ strains by investigating a bacterial community associated with the rhizosphere of ginger (Zingiber officinale growing in the Malaysian rainforest. Results By using a basal growth medium containing N-(3-oxohexanoylhomoserine lactone (3-oxo-C6-HSL as the sole source of carbon and nitrogen, the ginger rhizosphere associated bacteria were enriched for strains with AHL-degrading capabilities. Three isolates belonging to the genera Acinetobacter (GG2, Burkholderia (GG4 and Klebsiella (Se14 were identified and selected for further study. Strains GG2 and Se14 exhibited the broadest spectrum of AHL-degrading activities via lactonolysis while GG4 reduced 3-oxo-AHLs to the corresponding 3-hydroxy compounds. In GG2 and GG4, QQ was found to co-exist with AHL-dependent QS and GG2 was shown to inactivate both self-generated and exogenously supplied AHLs. GG2, GG4 and Se14 were each able to attenuate virulence factor production in both human and plant pathogens. Conclusions Collectively our data show that ginger rhizosphere bacteria which make and degrade a wide range of AHLs are likely to play a collective role in determining the QS-dependent phenotype of a polymicrobial community.

  8. Draft Genome Sequences of Pseudomonas fluorescens BS2 and Pusillimonas noertemannii BS8, Soil Bacteria That Cooperate To Degrade the Poly-γ-d-Glutamic Acid Anthrax Capsule.

    Science.gov (United States)

    Stabler, Richard A; Negus, David; Pain, Arnab; Taylor, Peter W

    2013-01-01

    A mixed culture of Pseudomonas fluorescens BS2 and Pusillimonas noertemannii BS8 degraded poly-γ-d-glutamic acid; when the 2 strains were cultured separately, no hydrolytic activity was apparent. Here we report the draft genome sequences of both soil isolates.

  9. Draft Genome Sequences of Pseudomonas fluorescens BS2 and Pusillimonas noertemannii BS8, Soil Bacteria That Cooperate To Degrade the Poly- -D-Glutamic Acid Anthrax Capsule

    KAUST Repository

    Stabler, R. A.

    2013-01-24

    A mixed culture of Pseudomonas fluorescens BS2 and Pusillimonas noertemannii BS8 degraded poly-γ-d-glutamic acid; when the 2 strains were cultured separately, no hydrolytic activity was apparent. Here we report the draft genome sequences of both soil isolates.

  10. Cry1Ac蛋白降解菌株FJSB3的分离鉴定及降解特性%ISOLATION AND IDENTIFICATION OF Cry1Ac PROTEIN-DEGRADING BACTERIA AND ITS DEGRADATION CHARACTERISTICS

    Institute of Scientific and Technical Information of China (English)

    赵辉欣; 刘阳; 邢福国

    2011-01-01

    A degradation of Cry1Ac protein in rice straw,bacterium FJSB3 capable of highly degrading Cry1Ac protein was isolated from the agricultural soil where the transgenic Cry1Acrice was grown.The FJSB3 was identified preliminarily as Stenotrophomonas sp.by phenotype observation,16S rDNA analysis and electron microscope.SDS-PAGE showed that FJSB3 could degrade Btprotein.Based on the single factor experiments,the optimal conditions of degrading Cry1Ac protein in rice straw were: 30℃,initial concentration of bacterium 2.0×106 CFU/ml,pH 7.0,C/N 25/1.Under these conditions,the degradation rate of Cry1Ac protein reached 92.86%.%从转Cry1Ac基因水稻种植田土壤中,分离纯化得到1株能高效降解Cry1Ac蛋白的细菌FJSB3。通过表型特征、16S rDNA扩增和电镜观察,初步鉴定FJSB3为寡养单胞菌(Stenotrophomonas sp.)。FJSB3发酵液能降解粗Bt蛋白。通过单因素试验确定FJSB3降解水稻秸秆中Cry1Ac蛋白的最适条件为:发酵温度30℃,初始菌液浓度2.0×106CFU/ml,pH 7.0,碳氮比(C/N)25/1。在此条件下,水稻秸秆中Cry1Ac蛋白降解率达到92.86%。

  11. Explosive Technology Group

    Data.gov (United States)

    Federal Laboratory Consortium — The Explosive Technology Group (ETG) provides diverse technical expertise and an agile, integrated approach to solve complex challenges for all classes of energetic...

  12. Complete Genome Sequences of Pseudomonas monteilii SB3078 and SB3101, Two Benzene-, Toluene-, and Ethylbenzene-Degrading Bacteria Used for Bioaugmentation

    DEFF Research Database (Denmark)

    Dueholm, Morten Simonsen; Albertsen, Mads; D'Imperio, Seth;

    2014-01-01

    Pseudomonas monteilii SB3078 and SB3101 are benzene-, toluene-, and ethylbenzene-degrading strains used for bioaugmentation in relation to treatment of wastewater contaminated with petrochemical hydrocarbons. Complete genome sequencing of the bioaugmentation strains confirms that they are very...... closely related (100.0% average nucleotide identity). Both strains contain extensive integration of phage elements, with the main difference being insertion of additional phage elements in the SB3078 genome....

  13. Research on the Screening of Degrading Bacteria & Effect of Additives on the Film Degradation of PVA%聚乙烯醇薄膜降解菌的筛选及助剂的影响研究

    Institute of Scientific and Technical Information of China (English)

    郝喜海; 衣潇鹏; 李丁; 李贞; 邓靖; 彭笑

    2015-01-01

    利用聚乙烯醇( PVA)为唯一碳源的筛选培养基对PVA包装薄膜工厂排污口处的活性污泥进行筛选,并研究薄膜助剂对PVA降解性的影响。通过透明圈实验对菌株进行筛选,并经形态学及显微镜观察进行初步鉴定。从定性和定量角度,分别利用透明圈实验和紫外分光光度法研究薄膜助剂对PVA降解性的影响。结果表明:10株PVA降解菌中降解效果最佳的菌株XP-02鉴定为青霉菌;研究还发现,当PVA包装薄膜中的助剂浓度为0.05 g/L时,均能提高PVA的降解效果。其中, PVA包装薄膜中添加增塑剂(聚乙二醇)、表面活性剂(十二烷基苯磺酸钠)、乳化剂(吐温-80)可以使PVA的降解率分别提高5.01%,8.67%,11.21%。通过在PVA包装薄膜中添加适量聚乙二醇、十二烷基苯磺酸钠、吐温-80的可以提高PVA的生物降解率,但各组分最适比例还需要进一步研究进行确定。%Poly vinyl alcohol ( PVA) was used as the sole carbon source in the medium to isolate PVA degrading bacterium from an activated sludge of water soluble PVA packaging film factory. The effect of additives on PVA degradability was researched. The PVA degradable bacterium was screened after transparent circle experiment and was preliminary identified through morphology and optical microscope observation. From the perspective of qualitative and quantitative, the PVA degradable influence of film additives was investigated after transparent circle experiment and ultraviolet spectroscopy respectively. The results showed that the strain XP-02 had best degradation effect in ten PVA degradable bacterium and was preliminary identified as penicillium. Additives in the PVA packaging film can increase the degradable effect. By increasing the plasticizer polyethylene glycol ( PEG) , surface active agent sodium dodecyl benzene sulfonate ( SDBS ) , and emulsifying agent ( tween-80 ) , the biodegradation rate of PVA was increased by 5. 01%, 8. 67

  14. 角蛋白降解菌分离、鉴定及其降解机制研究%Research on isolation and identification of keratin-degrading bacterias and its degradation mechanism

    Institute of Scientific and Technical Information of China (English)

    齐志国; 张铁鹰; 董杰丽; 杜家菊

    2012-01-01

    实验旨在筛选具有高效角蛋白水解活性的微生物,并对其降解羽毛角蛋白机制进行研究,为提高角蛋白生物降解率提供理论指导.采用透明圈和完整羽毛降解相结合的方法,从废弃羽毛中筛选角蛋白降解茵,并进一步研究其羽毛角蛋白降解过程.获得一株可高效降解角蛋白菌株,基于形态观察和16S rDNA分子鉴定,该茵被命名为Bacillus licheniformis CP-7,其5d可将天然完整羽毛完全降解.CP-7发酵过程产生大量巯基、可溶性蛋白和亚硫酸盐.分离发酵48 h菌株胞内、胞外粗酶液,发现胞外酶液具有较高的角蛋白酶活性,而胞内酶液具有一定二硫键还原酶活性.胞内酶液能够极显著地促进胞外酶液水解角蛋白活性(P<0.01),但对酪蛋白水解活性无影响(P>0.05).筛选菌CP-7为具有高二硫键还原能力的角蛋白降解茵,二硫键还原酶可能是高效降解羽毛角蛋白的关键.%This study aimed al screening of the microorganisms with high keratinolytic activity and providing a theoretical basis to investigate the mechanism of degradation of feather keratin and improve the utilization of keratin resources. In this work, we isolated keratin-degrading microorganisms from decomposed feathers by combining the method of clearance zone diameter and complete feather degradation, furtherly, analyzed the feather keratin degradation process. After observing the shape feature and se-queneing the 16S rDNA, Strain CP-7 was identified and named as Bacillus licheniformis CP-7, which could completely degrade natural feathers during five days. The liquid fermentation results showed much thiol and soluble protein and sulfite were produced during the fermentation process. Studying the intra-cellular and extracellular crude enzyme (fermentation 48 h) found that extracellular enzyme and intracel-lular enzyme had high keratinase activity and disulfide reductase activity, respectively. Intraceliular enzyme could

  15. Screening and degradation characteristics of m-cresol dominant deg- radation bacteria%间甲苯酚优势降解菌的筛选及降解性能研究

    Institute of Scientific and Technical Information of China (English)

    单德鑫; 付秋玥; 丁丽

    2013-01-01

      以哈尔滨某气化厂生化车间活性污泥为菌源,在不同浓度间甲苯酚的选择培养基上培养,分离筛选后进行特性研究,并利用分子鉴定的方法对菌种进行鉴定.结果表明:当间甲苯酚含量为1000 mg·L-1,得到对间甲苯酚耐受能力最强的2个菌株,命名为JD-1和JD-2,根据间甲苯酚含量分别为300、500、600 mg·L-1的降解试验对比结果,确定JD-2菌为间甲苯酚优势降解菌.同时可知最优处理条件为:温度30℃,pH 7,葡萄糖量500 mg·L-1.通过对其菌落特征、生理生化性质以及16S rRNA测序鉴定结果得间甲苯酚优势降解菌JD-2属假单胞菌属(Pseudomonas sp.).%Activated sludge of a gasification plant in Harbin was acted as biological bacteria source, different concentrations of m-cresol was selected as culture medium, studied characteristics after screening, moreover, molecular method was used as bacteria species identification. The results showed that, when the cresol content was 1 000 mg·L-1, it got 2 strains of the most m-cresol tolerance ability, named as the JD-1 and JD-2, and when cresol content was 300, 500, 600 mg·L-1; the degradation results was compared to determine JD-2 as Methyl-dominant bacteria. The optimal conditions were temperature 30℃ and pH 7, and the glucose content 500 mg·L-1 for JD-2.The results obtained by colony characteristics, physiological and biochemical properties and the 16S rRNA sequencing cresol dominant degradation bacteria was Pseudomonas sp. JD-2.

  16. The detrimental influence of bacteria (E. coli, Shigella and Salmonella) on the degradation of organic compounds (and vice versa) in TiO2 photocatalysis and near-neutral photo-Fenton processes under simulated solar light.

    Science.gov (United States)

    Moncayo-Lasso, Alejandro; Mora-Arismendi, Luis Enrique; Rengifo-Herrera, Julián Andrés; Sanabria, Janeth; Benítez, Norberto; Pulgarin, César

    2012-05-01

    TiO2 photocatalytic and near-neutral photo-Fenton processes were tested under simulated solar light to degrade two models of natural organic matter - resorcinol (R) (which should interact strongly with TiO2 surfaces) and hydroquinone (H) - separately or in the presence of bacteria. Under similar oxidative conditions, inactivation of Escherichia coli, Shigella sonnei and Salmonella typhimurium was carried out in the absence and in the presence of 10 mg L(-1) of R and H. The 100% abatement of R and H by using a TiO2 photocatalytic process in the absence of bacteria was observed in 90 min for R and in 120 min for H, while in the presence of microorganisms abatement was only of 55% and 35% for R and H, respectively. Photo-Fenton reagent at pH 5.0 completely removed R and H in 40 min, whereas in the presence of microorganisms their degradation was of 60% to 80%. On the other hand, 2 h of TiO2 photocatalytic process inactivated S. typhimurium and E. coli cells in three and six orders of magnitude, respectively, while S. sonnei was completely inactivated in 10 min. In the presence of R or H, the bacterial inactivation via TiO2 photocatalysis was significantly decreased. With photo-Fenton reagent at pH 5 all the microorganisms tested were completely inactivated in 40 min of simulated solar light irradiation in the absence of organics. When R and H were present, bacterial photo-Fenton inactivation was less affected. The obtained results suggest that in both TiO2 and iron photo-assisted processes, there is competition between organic substances and bacteria simultaneously present for generated reactive oxygen species (ROS). This competition is most important in heterogeneous systems, mainly when there are strong organic-TiO2 surface interactions, as in the resorcinol case, suggesting that bacteria-TiO2 interactions could play a key role in photocatalytic cell inactivation processes.

  17. Isolation and Identification of Lactic Acid Bacteria of Degradation of Nitrite%降解亚硝酸盐乳酸菌的分离与鉴定

    Institute of Scientific and Technical Information of China (English)

    韩梅; 王衍强; 彭帅; 崔艺久; 王悦

    2011-01-01

    Isolated Lactobacillus from water was used to degrade nitrite. The strains wyq-1, wyq-2 and wyq-3 were identified by the characteristics of morphology, physiology and biochemistrytests and 16S rRNA sequence was analysed by molecular biological method. The degradation nitritea ability was based on GB/T 5009.33-2008. The three strains were identified as Lactobacillus fermentum, Lactobacillus acidophilus and Lactobacillus plantarum. The degradation nitritea ability was detected in the hemoglobin MRS liquid medium and pork medium, the degradation rate of wyq-3 was 87.0% and 69.4%. Nitritea in meat products can be degradated well by Lactobacillus.%从水体中分离能够降解亚硝酸盐的乳酸菌.参照《伯杰细菌鉴定手册》对分离出的wyq-1、wyq-2和wyq-3株菌进行生理生化特性鉴定,并利用分子生物学方法进行16SrRNA序列分析,参照国家标准方法GB/T 5009.33-2008中的格里斯比色法测定降解亚硝酸盐的能力.结果表明:3株菌均为乳杆菌属( Lactobacillus),wyq-1为发酵乳杆菌(Lactobacillus fermentum)、wyq-2为嗜酸乳杆菌(Lactobacillus acidophilus)、wyq-3为植物乳杆菌(Lactobacillus plantarum).对3株菌在添加血红素的MRS液体培养基中和猪肉培养基中降解亚硝酸盐的能力进行了测试,菌株wyq-3降解能力最好,降解率分别为87.0%和69.4%.研究结果表明用乳酸菌降解肉制品中的亚硝酸盐可以取得较好的效果.

  18. Isolation and Identification of Petroleum Degradation Bacteria and Interspecific Interactions Among Four Bacillus Strains%石油降解菌的分离鉴定及4株芽胞杆菌种间效应

    Institute of Scientific and Technical Information of China (English)

    王佳楠; 石妍云; 郑力燕; 王喆; 蔡章; 刘杰

    2015-01-01

    Six petroleum-degrading strains were isolated from oil-contaminated soil at Dagang oil field an d oil sewage on Bohai offshore drilling platform in Tianjin using enrichment culture and isolation method. The physiological biochemical test together with 16S rDNA sequencing analysis indicated that they belonged to Bacillus ( S1, S2, S3, S4), Pseudomonas ( W1) and Ochrobactrum ( W2), respectively. The strain S3 had the maximum degradation rate of alkane (41. 3% ) and aromatic hydrocarbon (30. 9% ) among all isolated strains showing the better degradation efficiency by endogenous bacteria when compared to that by the exogenous bacteria. The four Bacillus strains were used to construct microbiome, thereafter subjected to petroleum degradation efficiency test and analyzed. The results showed that microbiome F3 consisting of S1 and S4 had the maximum degradation rates of alkane (50. 5% ) and aromatic hydrocarbon (54. 0% ), which were 69. 9% and 156. 1% higher than those by single bacterium, respectively. Furthermore, they were 22. 1% and 74. 6% respectively higher than those by the most optimal degradation bacterium S3. Microbiome F4 consisting of S2 and S3 had the minimum degradation rates of alkane (18. 5% ) and aromatic hydrocarbon (18. 9% ) which were 55. 3% and 39. 0% lower than the degradation rates of single bacterium, respectively. The results also demonstrated that there were both microbial synergy promotion and antagonism inhibition among bacteria of the same genus in the petroleum degradation period. Bacteria with close affinity in Bacillus genus displayed mainly promoted petroleum degradation effect.%通过富集培养和分离纯化的方法,从天津大港油田石油污染土壤和渤海海上钻井平台洗油污水中分离出6株石油降解细菌,生理生化试验及16S rDNA 序列分析鉴定表明,它们分别属于 Bacillus 芽胞杆菌属(S1、 S2、 S3、 S4)、 Pseudomonas 假单胞菌属(W1)和 Ochrobactrum 苍白杆菌属(W2),其中,S3

  19. 戊唑醇农药降解菌的筛选及其降解效能初探%Tebuconazole Pesticide Degradation Bacteria Screening and Its Degradation Efficiency Trial

    Institute of Scientific and Technical Information of China (English)

    吴红萍; 万红艳; 王锐萍

    2013-01-01

    [目的]从自然环境中分离纯化得到戊唑醇农药降解菌株,为该农药生产及使用过程中带来的环境污染问题的解决提供菌种.[方法]通过富集培养和平板分离技术,利用高效液相色谱法和平板培养法测定菌株对戊唑醇的降解及耐受性能.[结果]得到4株(DZ-1、DZ-2、DZ-3、DZ-4)具有高效、高耐受性及遗传稳定性好的菌株,其降解戊唑醇农药的效率分别为91.5%、89.9%、92.2%、90.8%;菌株DZ-1、DZ-2、DZ-4和DZ-3对戊唑醇农药耐受限分别为3 000、3 000、2 500、2500 mg/L;4株菌的传代菌株对戊唑醇农药降解效率分别为90.7%、89.5%、92.2%、90.4%,菌株DZ-1、DZ-2和DZ-3、DZ-4的传代菌株对戊唑醇农药耐受限分别为3 000、2 500 mg/L.[结论]试验采用的富集培养及平板分离技术能有效分离纯化到不同环境中的菌株;高效液相色谱法和平板培养法能够对降解和耐受性能进行准确检测.%[Aims] For the purpose of solve the environmental pollution problems which formed during tebuconazole production and using process, tebuconazole pesticide degradation strains were separated and purified form natural environment. [Methods] Through the enrichment culture and plate separation technology, the degradation and tolerance ability of the bacterial strain were determined by using high performance liquid chromatography and plate culture method. [Results] Four strains were found with high efficiency, high tolerance and good genetic stability degradation performance. The four strains were DZ-1, DZ-2, DZ-3 and DZ-4, and their degradation of tebuconazole efficiency were 91.5, 89.9, 92.2 and 90.8% respectively. Strain DZ-1, DZ-2, DZ-4 and DZ-3's tebuconazole tolerance limit were 3 000, 3 000, 2 500 and 2500 mg/L. The four transfer culture strains' degradation of tebuconazole efficiency were 90.7, 89.5, 92.2 and 90.4% respectively, and transfer culture strain DZ-1, DZ-2 and DZ-3, DZ-4's tebuconazole

  20. Isolation, Identification and Degradation Characteristics Analysis of Fomesafen Degradation Bacteria%氟磺胺草醚降解菌F-12的分离鉴定及降解特性研究

    Institute of Scientific and Technical Information of China (English)

    吴秋彩; 刘艳; 王晓萍

    2012-01-01

    In order to study the mechanism of bioremediation in fomesafen-contaminated soil, a fomesafen degradable strain was obtained from fomesafen -contaminated soil. F-12. A bacterium which could use fomesafen as sole carbon source for growth, was isolated from the soil of long term applied with fomesafen by enrichment culture. Base on colony morphology, physiological and biochemical characteristics and 16S rDNA gene sequence analysis, the strain F-12 was identified preliminarily as Klebsiella sp.. The effect of initial concentration of fomesafen, inoculation amount, temperature and pH on degradation efficiencies was studied. The optimal degrading conditions were: initial concentration of fomesafen 100 mg/L, inoculation amount of 15%, pH 6.0, respectively, under the optimal conditions, the degrading efficiency could reach more than 80% after 2 days at 35T, holding the potential of being applied in the fomesafen bioremediation of contaminated soils.%为了研究氟磺胺草醚污染土壤的生物修复机理,利用富集培养技术从长期施用氟磺胺草醚的土壤中分离得到1株能够以氟磺胺草醚为唯一碳源生长的细菌,命名为F-12.通过菌落形态、生理生化特性和16S rDNA基因序列分析,初步鉴定菌株F-12为克雷伯氏菌属(Klebsiella sp.).并分析了氟磺胺草醚的初始浓度、接种量、温度和pH对菌株F-12降解氟磺胺草醚效果的影响,确定了最佳降解条件.结果显示,该菌在氟磺胺草醚浓度为100 mg/L、接种量为15%、pH 6.0、温度35℃条件下,培养2天后对氟磺胺草醚的降解效率达到80%以上.具有应用到氟磺胺草醚污染土壤生物修复的能力.

  1. Explosions and static electricity

    DEFF Research Database (Denmark)

    Jonassen, Niels M

    1995-01-01

    The paper deals with the problem of electrostatic discharges as causes of ignition of vapor/gas and dust/gas mixtures. A series of examples of static-caused explosions will be discussed. The concepts of explosion limits, the incendiveness of various discharge types and safe voltages are explained...

  2. Isolation and characterization of dimethyl sulfide (DMS)-degrading bacteria from soil and biofilter treating waste gas containing DMS from the laboratory and pulp and paper industry.

    Science.gov (United States)

    Giri, Balendu Shekher; Juwarkar, Asha A; Satpute, D B; Mudliar, S N; Pandey, R A

    2012-07-01

    Dimethyl sulfide (DMS) is one of the sulfurous pollutants present in the waste gas generated from the pulp and paper industry. DMS has environmental health implications; therefore, it is necessary to treat the waste gas containing DMS prior to discharge into the environment. A bench-scale biofilter was operated in the laboratory as well as in a pulp and paper industry for the treatment of DMS. Both the biofilters were packed with pre-sterilized wood chips and cow dung/compost of the same origin seeded with biomass developed from garden soil enriched with DMS. The biofilters were operated for the generation of process parameters, and the potential microorganisms isolated from both the biofilters have been purified and characterized for degradation of DMS. Further, these cultures were purified on a basal medium using DMS as a sole carbon source for the growth. Further, the purified cultures were characterized through standard fatty acid methyl esters (FAME)-gas chromatography method, and the isolates were found to be mesophilic, aerobic microbes. These microbes were identified as Bacillus sphaericus-GC subgroup F, Paenibacillus polymyxa, B. sphaericus-GC subgroup F, B. sphaericus-GC subgroup F, and Bacillus megaterium-GC subgroup A, respectively. The potential culture for degradation of DMS was identified as B. sphaericus by 16s rRNA molecular analysis.

  3. Effect of birch (Betula spp.) and associated rhizoidal bacteria on the degradation of soil polyaromatic hydrocarbons, PAH-induced changes in birch proteome and bacterial community

    Energy Technology Data Exchange (ETDEWEB)

    Tervahauta, Arja I. [Department of Biosciences, University of Kuopio, P.O. Box 1627, FIN-70211 Kuopio (Finland)], E-mail: arja.tervahauta@uku.fi; Fortelius, Carola [EVTEK University of Applied Sciences, Vantaa (Finland); Tuomainen, Marjo [Department of Biosciences, University of Kuopio, P.O. Box 1627, FIN-70211 Kuopio (Finland); Akerman, Marja-Leena [EVTEK University of Applied Sciences, Vantaa (Finland); Rantalainen, Kimmo [Department of Biosciences, University of Kuopio, P.O. Box 1627, FIN-70211 Kuopio (Finland); Sipilae, Timo [Department of Biological and Environmental Sciences, University of Helsinki (Finland); Lehesranta, Satu J.; Koistinen, Kaisa M.; Kaerenlampi, Sirpa [Department of Biosciences, University of Kuopio, P.O. Box 1627, FIN-70211 Kuopio (Finland); Yrjaelae, Kim [Department of Biological and Environmental Sciences, University of Helsinki (Finland)

    2009-01-15

    Two birch clones originating from metal-contaminated sites were exposed for 3 months to soils (sand-peat ratio 1:1 or 4:1) spiked with a mixture of polyaromatic hydrocarbons (PAHs; anthracene, fluoranthene, phenanthrene, pyrene). PAH degradation differed between the two birch clones and also by the soil type. The statistically most significant elimination (p {<=} 0.01), i.e. 88% of total PAHs, was observed in the more sandy soil planted with birch, the clearest positive effect being found with Betula pubescens clone on phenanthrene. PAHs and soil composition had rather small effects on birch protein complement. Three proteins with clonal differences were identified: ferritin-like protein, auxin-induced protein and peroxidase. Differences in planted and non-planted soils were detected in bacterial communities by 16S rRNA T-RFLP, and the overall bacterial community structures were diverse. Even though both represent complex systems, trees and rhizoidal microbes in combination can provide interesting possibilities for bioremediation of PAH-polluted soils. - Birch can enhance degradation of PAH compounds in the rhizosphere.

  4. ISOLATION AND IDENTIFICATION OFβ-CYCLOCITRAL DEGRADING BACTERIA%异味物质β-环柠檬醛降解菌的分离和鉴定

    Institute of Scientific and Technical Information of China (English)

    代志刚; 蒋永光; 谷依露; 胡晗华; 李仁辉

    2014-01-01

    β-cyclocitral, one of the most common taste and odour compounds, is mostly produced by water bloom forming Microcystis. Using the agar-plate method, bacterial strains DH16 and DH18 for degrading β-cyclocitral were isolated from the water samples in the Microcystis dominated water blooms. Phylogenetic analysis based on the 16S rRNA gene sequences revealed that these strains belonged to genera Acidovorax and Acinetobacter respectively. The strain Novosphingobiums sp.THN1, a reported microcystin degraded strain, was also shown to have the ability to de-grade β-cyclocitral. The experiment using β-cyclocitral as the sole carbon source demonstrated that strains DH18 and THN1were able to decomposeβ-cyclocitral efficiently, and these bacterial strains could provide good model organisms for the studying the biodegradation ofβ-cyclocitral.%β-环柠檬醛(β-cyclocitral)是由微囊藻产生的主要藻源性异味污染物之一。利用稀释涂平板法,从采集到的微囊藻水华水样中分离得到两株降解β-环柠檬醛的菌株DH16和DH18,16S rRNA序列比对和系统进化树分析表明它们分别属于食酸菌属(Acidovorax)和不动杆菌属(Acinetobacter)。实验室保藏的微囊藻毒素降解菌Novosphingobium sp. THN1对β-环柠檬醛也有降解效果,该菌属于新鞘氨醇杆菌属(Novosphingobium)。对三株菌进行以β-环柠檬醛为唯一碳源的培养实验,气相色谱检测分析表明DH18和THN1两株菌具有高效降解β-环柠檬醛的能力,可以作为研究β-环柠檬醛生物降解机理的理想材料。

  5. Study on the Selection and Degradation Characteristics of Long-chain Alkanes Degrading Bacteria%降解长链烷烃菌株的选育及性能研究

    Institute of Scientific and Technical Information of China (English)

    吕立君; 王光华; 李文兵; 卢露露; 刘念汝; 陈彪; 刘贝

    2016-01-01

    以正十六烷无机盐培养基为选择培养基,从武汉石化输油管附近土壤中筛选出1株高效降解长链烷烃的菌株,命名C3,对其进行生理生化、16S rDNA鉴定,C3为不动杆菌属。在正十六烷浓度为1000 mg/L的无机盐培养基中接入4%的种子液,放入35℃、125 r/min摇床中震荡60 h ,C3对正十六烷的降解率可达100%,其降解动力学拟合结果符合Monod模型。将C3应用到柴蜡的降解,96 h后,1000 mg/L的柴蜡混合溶液的降解率能达到91%。C3产生的生物表面活性剂经鉴定为磷脂类活性剂,排油圈直径为80 mm ,CMC约为35 mg/L ,能将水的表面张力降低到20.79 mN/m。该菌株对长链烷烃的降解提供了良好的菌源。%With the mineral salt medium with the n -hexadecane as the selecting medium ,a strain that can effectively de-grade the long-chain alkane is screened out from the soil near the pipeline of Wuhan Petrochemical Works ,named as C3 , conducted for physiological and biochemical identification and 16S rDNA comparison and the strain C3 is identified as Acine-tobacter sp .The n-hexadecane degradation is 100% after 4% seed liquid of the strain is inoculated on the mineral salt medi-um with 1 000 mg/L of n-hexadecane and cultured at 35 ℃ 、125 r/min for 60 h ,in accordance with Monod equation .The degradation of diesel and paraffin mixture can reach 91% after 96 h .The biosurfactants produced by strain C3 ,is identified as phospholipids ,whose oil spreading size is 80 mm ,the CMC of purified product is 35 mg/L ,and the lowest surface tension is 20 .79 mN/m .The study has provided the good resources of the microbial strain for degrading long -chain alkane .

  6. Screening and Isolation of Bacteria Degrading Herbicide Glyphosate and Its Degradation Efficiency%草甘膦降解菌的分离及其降解效能研究

    Institute of Scientific and Technical Information of China (English)

    尚轶; 沈慧敏; 杨顺义; 汪春益; 吴永波

    2011-01-01

    从受草甘膦污染严重的土壤中富集、筛选并分离到1株降解菌G1,采用室内测定方法,对该菌株的生物学特性、对草甘膦的降解效能及对草甘膦的耐受性进行了初步研究.结果表明,菌株G1能以草甘膦作为惟一的碳源生长.在含有草甘膦的培养基上其降解率达71.76%,最适抗草甘膦浓度为300mmol/L,对草甘膦的抗性浓度在500mmol/L以下.%Glyphosate is commonly used as an organophosphate herbicide in the world. But the continuous usage of the herbicide will pollute environment seriously. Biodegradation is an effective way of bioremedying the polluted soil. One strain capable of degrading herbicide glyphosate was screened and isolated from the glyphosate polluted soil. The strain Gl was selected and primarily studied. The results showed that glyphosate could be used as the sole carbon source of G1 ,and the degradation rate of G1 were 71.76%. G1 could grow exuberantly in glyphosate solution of 300 mmol/L, but it would be restrict when the glyphosate solution was above 500 mmol/L.

  7. H{sub 2}O{sub 2}-assisted photocatalysis on flower-like rutile TiO{sub 2} nanostructures: Rapid dye degradation and inactivation of bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Kőrösi, László, E-mail: ltkorosi@gmail.com [Research Institute for Viticulture and Oenology, University of Pécs, H-7634 Pécs, Pázmány Péter u. 4 (Hungary); Prato, Mirko; Scarpellini, Alice [Department of Nanochemistry, Istituto Italianodi Tecnologia, via Morego 30, 16163, Genova (Italy); Kovács, János [Department of Geology & Meteorology, University of Pécs, Ifjúság u. 6, H-7624, Pécs (Hungary); Environmental Analytical and Geoanalytical Research Group, Szentágothai Research Centre, University of Pécs, Ifjúság u. 20, H-7624, Pécs (Hungary); Dömötör, Dóra; Kovács, Tamás; Papp, Szilvia [Department of Biotechnology, Nanophage Therapy Center, Enviroinvest Corporation, Kertváros u. 2, H-7632, Pécs (Hungary)

    2016-03-01

    Graphical abstract: - Highlights: • Hierarchically assembled rutile TiO{sub 2} was synthesized at room temperature. • Hydrothermal treatment enhanced the crystallinity, while morphology was maintained. • Hydrothermal treatment also led to larger crystallites and a lower surface area. • Effective K. pneumoniae killing and MO degradation were achieved with the use of H{sub 2}O{sub 2}. • Higher crystallinity enhanced the reaction rate in the presence of H{sub 2}O{sub 2}. - Abstract: Hierarchically assembled flower-like rutile TiO{sub 2} (FLH-R-TiO{sub 2}) nanostructures were successfully synthesized from TiCl{sub 4} at room temperature without the use of surfactants or templates. An initial sol–gel synthesis at room temperature allowed long-term hydrolysis and condensation of the precursors. The resulting FLH-R-TiO{sub 2} possessed relatively high crystallinity (85 wt%) and consisted of rod-shaped subunits assembling into cauliflower-like nanostructures. Hydrothermal evolution of FLH-R-TiO{sub 2} at different temperatures (150, 200 and 250 °C) was followed by means of X-ray diffraction, transmission and scanning electron microscopy. These FLH-R-TiO{sub 2} nanostructures were tested as photocatalysts under simulated daylight (full-spectrum lighting) in the degradation of methyl orange and in the inactivation of a multiresistant bacterium, Klebsiella pneumoniae. The effects of hydrothermal treatment on the structure, photocatalytic behavior and antibacterial activity of FLH-R-TiO{sub 2} are discussed.

  8. 1株乙羧氟草醚降解菌的分离鉴定与降解特性研究%Isolation and Identification of a Strain of Fluoroglycofen Degradation Bacteria and Its Degradation Research

    Institute of Scientific and Technical Information of China (English)

    陈晓娟; 王青玲

    2011-01-01

    In this study, a bacterial strain using fluoroglycofen as sole carbon source was isolated from activated sludge of wastewater treatment tank in an insecticide factory. It was identified by physiological-biochemical identification and 16S rRNA gene sequences homology analysis, it belonged to Staphylococcus saprophyticus. The strain was named as YSC-1 and its growth was studied. The results showed that the optimum growth conditions for YSC-1 were 30℃ and pI-I 7. 0. The concentration of Nacl affected the growth significantly. The strain degraded fluoroglycofen at temperature of 20℃ -40℃ with the maximum fluoroglyoofen degrading rate at 30℃ and 7. 0, respectively. Increasing concentration of tluoroglycofen resulted in toxic effect on strain YSC-lto reduced the biodegradation rate. Increasing inoculums volume would speed up the degradation of tluoroglycofen. For industrial wastewater treated for seven days with final fluoroglycofen concentration of 100 mg/L, the removal rate reached 91.62%, which showed that the strain YSC-1 had a good application prospect for treatment of wastcwater.%本研究从某农药厂污水处理池的活性污泥中分离得到1株能以乙羧氟草醚为唯一碳源生长的菌株。经生理生化鉴定和16SrRNA基因序列同源性分析,将此菌株初步鉴定为腐生葡萄球茵(Staphylococcussaprophyticus),并命名为YSC.1。对菌株YSC.1的生长特性研究表明:茵株的最佳生长温度和pH分别为30℃、7.0;NaCI浓度对菌株YSC-1生长有较大的影响。菌株在20℃-40℃之间均能降解乙羧氟草醚,在30%1、pH7.0的条件下对乙羧氟草醚的降解率最高;增加乙羧氟草醚的浓度会对菌株产生毒害作用,降低其降解率;提高接种量可以加快乙羧氟草醚的降解。在乙羧氟草醚终浓度为100mg/L的工业废水经7d处理后,乙羧氟草醚的去除率达91.62%,说明菌株YSC-1在废水处理中具有很好的应用前景。

  9. Degradation of heme in gram-negative bacteria: the product of the hemO gene of Neisseriae is a heme oxygenase.

    Science.gov (United States)

    Zhu, W; Wilks, A; Stojiljkovic, I

    2000-12-01

    A full-length heme oxygenase gene from the gram-negative pathogen Neisseria meningitidis was cloned and expressed in Escherichia coli. Expression of the enzyme yielded soluble catalytically active protein and caused accumulation of biliverdin within the E. coli cells. The purified HemO forms a 1:1 complex with heme and has a heme protein spectrum similar to that previously reported for the purified heme oxygenase (HmuO) from the gram-positive pathogen Corynebacterium diphtheriae and for eukaryotic heme oxygenases. The overall sequence identity between HemO and these heme oxygenases is, however, low. In the presence of ascorbate or the human NADPH cytochrome P450 reductase system, the heme-HemO complex is converted to ferric-biliverdin IXalpha and carbon monoxide as the final products. Homologs of the hemO gene were identified and characterized in six commensal Neisseria isolates, Neisseria lactamica, Neisseria subflava, Neisseria flava, Neisseria polysacchareae, Neisseria kochii, and Neisseria cinerea. All HemO orthologs shared between 95 and 98% identity in amino acid sequences with functionally important residues being completely conserved. This is the first heme oxygenase identified in a gram-negative pathogen. The identification of HemO as a heme oxygenase provides further evidence that oxidative cleavage of the heme is the mechanism by which some bacteria acquire iron for further use.

  10. Enrichment of aliphatic, alicyclic and aromatic acids by oil-degrading bacteria isolated from the rhizosphere of plants growing in oil-contaminated soil from Kazakhstan.

    Science.gov (United States)

    Mikolasch, Annett; Omirbekova, Anel; Schumann, Peter; Reinhard, Anne; Sheikhany, Halah; Berzhanova, Ramza; Mukasheva, Togzhan; Schauer, Frieder

    2015-05-01

    Three microbial strains were isolated from the rhizosphere of alfalfa (Medicago sativa), grass mixture (Festuca rubra, 75 %; Lolium perenne, 20 %; Poa pratensis, 10 %), and rape (Brassica napus) on the basis of their high capacity to use crude oil as the sole carbon and energy source. These isolates used an unusually wide spectrum of hydrocarbons as substrates (more than 80), including n-alkanes with chain lengths ranging from C12 to C32, monomethyl- and monoethyl-substituted alkanes (C12-C23), n-alkylcyclo alkanes with alkyl chain lengths from 4 to 18 carbon atoms, as well as substituted monoaromatic and diaromatic hydrocarbons. These three strains were identified as Gordonia rubripertincta and Rhodococcus sp. SBUG 1968. During their transformation of this wide range of hydrocarbon substrates, a very large number of aliphatic, alicyclic, and aromatic acids was detected, 44 of them were identified by GC/MS analyses, and 4 of them are described as metabolites for the first time. Inoculation of plant seeds with these highly potent bacteria had a beneficial effect on shoot and root development of plants which were grown on oil-contaminated sand.

  11. Simultaneous degradation of waste phosphogypsum and liquid manure from industrial pig farm by a mixed community of sulfate-reducing bacteria.

    Science.gov (United States)

    Rzeczycka, Marzenna; Miernik, Antoni; Markiewicz, Zdzislaw

    2010-01-01

    The utilization of pig manure as a source of nutrients for the dissimilatory reduction of sulfates present in phosphogypsum was investigated. In both types of media used (synthetic medium and raw pig manure) increased utilization of sulfates with growing COD/SO4(2-)ratio in the medium was observed. The percent of sulfate reduction obtained in synthetic medium was from 18 to 99%, whereas the value for cultures set up in raw liquid manure was from 12% (at COD/SO4(2-) of 0.3) up to as high as 98% (at COD/SO4(2-) equal 3.80). Even with almost complete reduction of sulfates the percent of COD reduction did not exceed 55%. Based on the results obtained it was concluded that the effectiveness of removal of sulfates and organic matter by sulfate-reducing bacteria (SRB) depends to a considerable degree on the proportion between organic matter and sulfates in the purified wastewaters. The optimal COD/SO4(2-)ratio for the removal oforganic matter was between 0.6 and 1.2 whereas the optimal ratio for the removal of sulfates was between 2.4 and 4.8.

  12. Comparative impact of cadmium on two phenanthrene-degrading bacteria isolated from cadmium and phenanthrene co-contaminated soil in China

    Energy Technology Data Exchange (ETDEWEB)

    Xiao Jiajun [School of Agriculture and Biology, Shanghai Jiaotong University, Shanghai, 200240 (China); Key Laboratory of Urban Agriculture (South), Ministry of Agriculture, 200240 (China); Guo Linjun; Wang Shipeng [School of Agriculture and Biology, Shanghai Jiaotong University, Shanghai, 200240 (China); Lu Yitong, E-mail: ytlu@sjtu.edu.cn [School of Agriculture and Biology, Shanghai Jiaotong University, Shanghai, 200240 (China); Key Laboratory of Urban Agriculture (South), Ministry of Agriculture, 200240 (China)

    2010-02-15

    Alcaligenes faecalis strain J08 and Brevundimonas sp. strain X08 were isolated from soils co-contaminated by cadmium (Cd) and polycyclic aromatic hydrocarbons (PAHs) in Northeast China. The two strains of bacteria were identified by phenotypic tests and 16S rDNA. Different Cd treatments (0.01 mM, 0.1 mM, 0.5 mM) showed no significant influence (p > 0.05) on the biodegradation of phenanthrene by A. faecalis strain J08. Brevundimonas sp. strain X08 also presented no significant differences in the biodegradation of phenanthrene in Cd treatments (0.01 mM, 0.1 mM). The growth of Brevundimonas sp. strain X08 was prohibited significantly (p < 0.05) by Cd in the concentration of 0.5 mM, but the biodegradation of phenanthrene in this group was not impaired. The specific biodegradation rate of Brevundimonas sp. strain X08 in the 0.5 mM Cd group was significantly (p < 0.05) higher than rates in other Cd treatments (0 mM, 0.01 mM, 0.1 mM).

  13. 影响降解菌W2修复异噁草酮污染土壤的三种因子的优化%Optimization of three factors affecting clomazone degradation in contaminated soils by degrading bacteria W2

    Institute of Scientific and Technical Information of China (English)

    刘亚光; 刘蕊; 唐广顺

    2011-01-01

    [Objective] To optimize the conditions for clomazone degradation in contaminated soils by degrading bacteria W2. [Method] Three factors affecting degradation rate were studied, including the soil moisture content,the amount of inoculation and fertilizer used. Based on the bioassay method, the degradation rates of bacteria W2 under different conditions were compared by using orthogonally rotational combination design. [Result] Mathematical regression model for clomazone degradation was established as follows: y= 62. 363 9 + 5. 872 8 × C1 —4.494 1 × C2 C3 — 1.262 1× C12 —4. 076 7 × C22. The results demonstrated that the significance order affecting degradation rate was: the soil moisture content, the amount of fertilize used and the amount of inoculation. [Conclusion] When the amount of inoculation ranged from 8.19 mL/kg to 11.81 mL/kg, soil moisture content ranged from 18.6% to 20.84%, and the amount of fertilizer used ranged from 1.83 g/kg to 2.52 g/kg, the degradation rate was above 60% in air-dried soils containing 500 μg/kg clomazone after 30 days, close to the highest degradation rate 65.56%.%[目的]确定降解菌W2对土壤中异噁草酮的最优生物修复条件.[方法]采用3因素5水平正交旋转组合设计,室外盆栽生物测定方法,研究降解菌W2接种量、土壤含水量和肥料添加量3种田间可控因子对降解菌W2修复异噁草酮污染土壤效果的影响.[结果]确定修复条件的优化数学回归模型为:y=62.3639+5.8728×C1-4.4941×C2C3-1.2621×C(2)1-4.0767×C(2)2,不同因子对土壤修复影响大小顺序依次为土壤含水量、肥料添加量、降解菌W2接种量.[结论]降解菌W2对土壤中异噁草酮的最优生物修复条件为:降解菌W2接种量8.19~11.81mL/㎏(A650=0.4),土壤含水量18.6%~20.84%,肥料添加量1.83~2.52g/㎏.在此范围内降解菌W2对异噁草酮有效成分浓度为500μg/㎏的风干土壤30d后的降解率可达60%以上,可接近

  14. H2O2-assisted photocatalysis on flower-like rutile TiO2 nanostructures: Rapid dye degradation and inactivation of bacteria

    Science.gov (United States)

    Kőrösi, László; Prato, Mirko; Scarpellini, Alice; Kovács, János; Dömötör, Dóra; Kovács, Tamás; Papp, Szilvia

    2016-03-01

    Hierarchically assembled flower-like rutile TiO2 (FLH-R-TiO2) nanostructures were successfully synthesized from TiCl4 at room temperature without the use of surfactants or templates. An initial sol-gel synthesis at room temperature allowed long-term hydrolysis and condensation of the precursors. The resulting FLH-R-TiO2 possessed relatively high crystallinity (85 wt%) and consisted of rod-shaped subunits assembling into cauliflower-like nanostructures. Hydrothermal evolution of FLH-R-TiO2 at different temperatures (150, 200 and 250 °C) was followed by means of X-ray diffraction, transmission and scanning electron microscopy. These FLH-R-TiO2 nanostructures were tested as photocatalysts under simulated daylight (full-spectrum lighting) in the degradation of methyl orange and in the inactivation of a multiresistant bacterium, Klebsiella pneumoniae. The effects of hydrothermal treatment on the structure, photocatalytic behavior and antibacterial activity of FLH-R-TiO2 are discussed.

  15. Intermittent Explosive Disorder

    Directory of Open Access Journals (Sweden)

    Lut Tamam

    2011-09-01

    Full Text Available Intermittent explosive disorder is an impulse control disorder characterized by the occurrence of discrete episodes of failure to resist aggressive impulses that result in violent assault or destruction of property. Though the prevalence intermittent explosive disorder has been reported to be relatively rare in frontier studies on the field, it is now common opinion that intermittent explosive disorder is far more common than previously thought especially in clinical psychiatry settings. Etiological studies displayed the role of both psychosocial factors like childhood traumas and biological factors like dysfunctional neurotransmitter systems and genetics. In differential diagnosis of the disorder, disorders involving agression as a symptom such as alcohol and drug intoxication, antisocial and borderline personality disorders, personality changes due to general medical conditions and behavioral disorder should be considered. A combination of pharmacological and psychotherapeutic approaches are suggested in the treatment of the disorder. This article briefly reviews the historical background, diagnostic criteria, epidemiology, etiology and treatment of intermittent explosive disorder.

  16. Explosive Components Facility

    Data.gov (United States)

    Federal Laboratory Consortium — The 98,000 square foot Explosive Components Facility (ECF) is a state-of-the-art facility that provides a full-range of chemical, material, and performance analysis...

  17. Shock waves & explosions

    CERN Document Server

    Sachdev, PL

    2004-01-01

    Understanding the causes and effects of explosions is important to experts in a broad range of disciplines, including the military, industrial and environmental research, aeronautic engineering, and applied mathematics. Offering an introductory review of historic research, Shock Waves and Explosions brings analytic and computational methods to a wide audience in a clear and thorough way. Beginning with an overview of the research on combustion and gas dynamics in the 1970s and 1980s, the author brings you up to date by covering modeling techniques and asymptotic and perturbative methods and ending with a chapter on computational methods.Most of the book deals with the mathematical analysis of explosions, but computational results are also included wherever they are available. Historical perspectives are provided on the advent of nonlinear science, as well as on the mathematical study of the blast wave phenomenon, both when visualized as a point explosion and when simulated as the expansion of a high-pressure ...

  18. Explosion suppression system

    Science.gov (United States)

    Sapko, Michael J.; Cortese, Robert A.

    1992-01-01

    An explosion suppression system and triggering apparatus therefor are provided for quenching gas and dust explosions. An electrically actuated suppression mechanism which dispenses an extinguishing agent into the path ahead of the propagating flame is actuated by a triggering device which is light powered. This triggering device is located upstream of the propagating flame and converts light from the flame to an electrical actuation signal. A pressure arming device electrically connects the triggering device to the suppression device only when the explosion is sensed by a further characteristic thereof beside the flame such as the pioneer pressure wave. The light powered triggering device includes a solar panel which is disposed in the path of the explosion and oriented between horizontally downward and vertical. Testing mechanisms are also preferably provided to test the operation of the solar panel and detonator as well as the pressure arming mechanism.

  19. Two novel cyclodextrin-degrading enzymes isolated from thermophilic bacteria have similar domain structures but differ in oligomeric state and activity profile.

    Science.gov (United States)

    Turner, Pernilla; Labes, Antje; Fridjonsson, Olafur H; Hreggvidson, Gudmundur O; Schönheit, Peter; Kristjansson, Jakob K; Holst, Olle; Karlsson, Eva Nordberg

    2005-10-01

    In this paper, we present the expression and characterization of two novel enzymes from the alpha-amylase family exhibiting cyclomaltodextrinase specificity. The nucleotide sequences encoding the enzymes were isolated from the genomic DNA of two thermophilic bacterial strains originating from Icelandic hot springs and belonging to the genera Anoxybacillus (AfCda13) and Laceyella (LsCda13). The genes were amplified using a consensus primer strategy utilizing two of the four conserved regions present in glycoside hydrolase family 13. No identifiable signal peptides were present in open reading frames encoding the enzymes, indicating an intracellular location of both enzymes, and their physiological function to be intracellular cyclodextrin degradation. The domain structures of both enzymes were also similar, including an N-terminal domain, the catalytic module composed of the A- and B-domains, and a C-terminal domain. Despite the similarity in domain composition, the two enzymes displayed differences in the oligomeric state with AfCda13 being a dimeric protein, whereas LsCda13 was monomeric. The two enzymes also displayed significantly different activity profiles, despite being active on the same range of substrates. It was shown that the enzyme displaying the highest activity on cyclodextrin was dimeric (AfCda13). Moreover, a fraction of the dimeric enzyme could be converted to a monomeric state in the presence of KCl and this fraction retained only 23% of its activity on alpha-cyclodextrin while its activity on starch was not significantly affected, indicating that the oligomeric state is an important factor for a high activity on cyclodextrin substrates.

  20. 一株孔雀石绿降解菌的分离筛选及其初步鉴定%Isolation and Identification of Malachite Green Degrading Bacteria Strain 2e

    Institute of Scientific and Technical Information of China (English)

    安贤惠; 张静; 王秀丽; 李联泰

    2013-01-01

    Great attention has been attracted to the environmental pollution and food security caused by malachite green.This study isolated and screened the malachite green degrading bacte-ria for the purpose of reducing environmental pollution.By selective medium,malachite green-de-grading bacteria were screened from six samples.The taxonomic status was identified based on colonial morphology on plate,and their appearances under a microscope combined with the com-parative analysis of 16S rDNA gene.Results showed that nine malachite green-degrading bacteria were isolated from six samples and the highest effective strain named 2e of them was screened. The strain 2e grew very well when the malachite green was offered as the sole carbon source and it made 96.9% degradation rate to 100 mg/L malachite green in 48 h.On plate,strain 2e was round,white,ticked and difficult to pick up and its edge was smooth and neat.It belonged to G-with a short-rod shape and a size of (1.3-1.8)μm×(0.51-0.68)μm.It is classed into Aero-monas Genus and named Aeromonas sp.2e.Such a study can shed light on further studies of wastewater treatment caused by malachite green.%近年来孔雀石绿引发的环境污染和食品安全问题倍受人们关注。为了分离、筛选能够高效降解孔雀石绿的菌株,为减少或去除环境中孔雀石绿的污染提供微生物资源,采用选择性培养基,从采集的6个土壤(淤泥)样品中分离筛选孔雀石绿降解率较高的菌株,通过平板观察菌落形态,染色显微镜下观测,16 S rDNA序列测定确定菌株的系统发育地位。结果分离到9株孔雀石绿降解菌,其中编号为2e的菌株降解效率最高,能以孔雀石绿作为唯一碳源进行生长,在48 h内可使100 mg/L的孔雀石绿降解率达到96.9%。菌株2 e菌落呈圆形、乳白色、粘稠、不易挑取,边缘光滑整齐;革兰氏阴性,短杆状,大小为(1.3~1.8)μm×(0.51~0.68)μm

  1. 蒸汽与液氨爆破对白酒丢糟稀硫酸降解工艺的影响研究%Effects of steam explosion and liquid ammonia blasting pretreatment on the distiller' s grains' dilute acid degradation

    Institute of Scientific and Technical Information of China (English)

    杨健; 张健; 钟霞; 刘跃红; 吴正云; 张文学; 邓宇; 本田建次

    2012-01-01

    Using selfinade explosive device, this study has researched the effect of Distiller's Grains' dilute acid degradation by steam explosion treatment (temperature:200℃~220℃, pressure: 1.0MPa~4.0MPa, hold time: 5min~20min) and liquid ammonia blasting pretreatment (temperature: 60℃-80℃, pressure: 1.0MPa~4.0MPa, hold time: 10min~30min). Meanwhile, chemical analysis, scanning electron microscope (SEM) and X-ray diffrac-tion(XRD) have been used. The results show that the cellulose, hemicellulose and reducing sugar of dilute acid degradation concentration are 33.42%, 19.03% and 51.92%, respectively when the steam explosion treatment conditions are at 210℃, 2.5MPa for 10min. While the cellulose, hemicellulose and reducing sugar of dilute acid degradation concentration are 19.01%, 32.45% and 48.05%, respectively when the liquid ammonia blasting pretreatment condition is at 70℃, 2.5MPa for 30min. At the same time, the results of SEM and XRD revealed that the morphological structure of distiller's grains are changed more or less that the surface has been ruptured and the space has been increased while the crystallinity of cellulose has been reduced after the steam explosion treatment and liquid ammonia blasting pretreatment, which are benefit for the dilute acid hydrolysis.%以白酒厂丢糟为原料,自制爆破装置,采用化学分析与扫描电镜、X射线衍射相结合的方法,分别研究了蒸汽爆破在温度200℃~220℃,维压时间5min~20min,压力1.0MPa~4.0MPa;液氨爆破在温度60℃~80℃,维压时间10min~30min,压力1.0MPa~4.0MPa的条件下,蒸汽与液氨爆破预处理对丢糟的主要成分与稀硫酸水解还原糖得率的影响.结果表明,当蒸汽爆破条件为温度210℃,时间10min,压力2.5MPa时,处理后物料纤维素含量33.42%,半纤维素19.03%,稀硫酸水解还原糖得率最高51.92%;当液氨爆破条件为温度70℃,时间30min,压力2.5MPa时,处理后物料纤维素含量19.01

  2. Study on Kinetic Parameters of Degradating Phenol by Photosynthetic Bacteria%光合细菌降解苯酚的动力学参数研究

    Institute of Scientific and Technical Information of China (English)

    刘宏芳

    2011-01-01

    苯酚是炼焦(油)、塑料、化工等行业生产过程中的主要污染物。随着经济的快速发展,各类含酚废水已经严重威胁着人类的生存环境。利用微生物处理含酚废水是一种经济有效且无二次污染的方法。本文主要研究了光合细菌-沼泽红假单胞菌降解含酚废水的动力学参数。实验结果表明,沼泽红假单胞菌对含酚废水具有很好的降解性能,正常状态下,该菌最大比生长速率μmax为8.00 mg/g.h,半速率常数Ks为247.92 mg/L,产率系数Y为5.88 mg/mg,内源呼吸系数Kd为0.29 d-1。%Phenol is the significant raw material or midst substance of coking plant,oil refining,plastic and medicine composing etc.More and more waste water containing phenol without treatment is threatening the environment heavily with the rapid development of economy.The method of microorganism biodegradation is economic and effective to treat with phenol waste water without second pollution.The kinetic parameters of the degradation of the phenol were studied with Rhodopseudomonas palustri.The experimental results show that Rhodopseudomonas palustris had excellent biodegradability for phenol wastewater.Under normal conditions,μmax is 8.00 mg/g·h,Ks is 247.92 mg/L,Y is 5.88 mg/mg and Kd is 0.29 d-1.

  3. The improvement of N-ammonia degradation of photosynthetic bacteria by protoplast fusion%采用原生质体融合技术选育提高氨氮降解效能的光合细菌

    Institute of Scientific and Technical Information of China (English)

    纪敦敦; 邱宏端; 谢航

    2011-01-01

    将高效降解氨氮的假丝酵母菌Candida sp.与高效降解亚硝酸盐氮的耐盐红螺菌Rhodaspeudomonas capsulate进行原生质体融合,探讨原生质体制备及融合的条件,并对融合子进行了筛选.结果表明,原生质体制备的优化条件如下:耐盐红螺菌,溶菌酶量为1.5 mg/mL,EDTA浓度为0.1 g/L,作用时间为45min;假丝酵母菌,蜗牛酶量为0.5 mg/mL,巯基乙醇的质量分数为0.1%,EDTA浓度为1g/L,作用时间为30 min.两种原生质体在聚乙二醇(PEG- 6000)和Ca2+的诱导下发生融合,在添加制霉菌素和链霉素的选择培养基上进行初筛,以生长稳定性及对氨氮、亚硝酸盐氮的降解效能等为指标进行复筛,获得了具有较好降解效能的融合子R1菌株.该菌株对亚硝酸盐氮的降解效能与耐盐红螺菌相同,达到90%以上;对氨氮的降解效能为63%,较耐盐红螺菌提高54%.%A protoplast fusion was conducted between two efficient photosynthetic bacteria, N-ammonia degrading Candida sp. And N-nitrite degrading Rhodospeudomonas capsulate. The conditions of the protoplast formation and fusion were optimized, and the best fusant was selected. The better protoplast formation for Rhodospeudomonas cap-sulata was found under the conditions of; lysozyme at 1.5 mg/mL, EDTA 0.1g/L and 45 min reaction time; for Candida sp. The better conditions of snail enzyme at 0.5 mg/mL, mercaptoethanol 0.1% ,EDTA 1 g/L and 30 min reaction time. The fusion was induced by PEG 6000 and Ca2+. Fusants were screened out by selective media containing added nystatin and streptomycin. The fusant R1 with better efficient degradation was selected by growth stability and degradation. The fusant Rl showed N -nitrite degradation at a rate of more than 90% , as good as for Rhodospeudomonas capsulata, but had N-ammonia degradation of only 63% , increased by 54%.

  4. Isolation and characterization of a crude oil degrading bacteria from formation water:comparative genomic analysis of environmental Ochrobactrum intermedium isolate versus clinical strains

    Institute of Scientific and Technical Information of China (English)

    Lu-jun CHAI; Du-jie HOU; Yue-hui SHE; Xia-wei JIANG; Fan ZHANG; Bei-wen ZHENG; Fu-chang SHU; Zheng-liang WANG; Qing-feng CUI; Han-ping DONG; Zhong-zhi ZHANG

    2015-01-01

    In this study, we isolated an environmental clone of Ochrobactrum intermedium, strain 2745-2, from the formation water of Changqing oilfield in Shanxi, China, which can degrade crude oil. Strain 2745-2 is aerobic and rod-shaped with optimum growth at 42 °C and pH 5.5. We sequenced the genome and found a single chromosome of 4 800 175 bp, with a G+C content of 57.63%. Sixty RNAs and 4737 protein-coding genes were identified:many of the genes are responsible for the degradation, emulsification, and metabolizing of crude oil. A comparative genomic analysis with related clinical strains (M86, 229E, and LMG3301T) showed that genes involved in virulence, disease, defense, phages, prophages, transposable elements, plasmids, and antibiotic resistance are also present in strain 2745-2.%题目:一株分离自地层水的石油降解菌的特性研究:Ochrobactrum intermedium环境分离菌株与临床分离菌株的比较基因组分析  目的:对一株地层水分离的石油降解菌 Ochrobactrum intermedium 2745-2进行生理生化特性的研究、全基因组测序以及比较基因组研究。  创新点:首次对一株分离自地层水的石油降解菌 O. inter-medium 2745-2进行了生理生化特性研究以及基因组测序,从基因组角度解释菌株2745-2对石油的降解能力。通过菌株2745-2与同种其他临床分离菌株的比较基因组学分析,表明2745-2仍具有多种与致病性相关的基因。  方法:通过微生物富集培养的方法从油井的地层水中分离石油降解微生物,通过聚合酶链反应(PCR)扩增16S核糖体RNA(rRNA)序列进行比较和分析确定菌株的分类地位属于 O. intermedium (图1)。采用Illumina HiSeq2000对菌株2745-2进行高通量测序,采用 Velvet 1.2.07和 RAST server分别进行数据组装和注释(表1)。PHAST寻找基因组中的噬菌体相关序列(图4和表2)。通过BLAST+和BRIG对环境分离菌株(2745-2

  5. 沉水植物轮叶黑藻附生细菌对双酚A的降解能力研究%Degradation of bisphenol A by the epiphytic bacteria of submerged macrophytes Hydrilla verticillata (L. f.) Royle

    Institute of Scientific and Technical Information of China (English)

    张国森; 王玉; 庄晓瑾; 杨劭; 蒋金辉

    2016-01-01

    Epiphytic bacteria of submerged macrophytes may have the capability in biodegradation and/or biotransformation of bisphenol A (BPA) in water column, therefore affect the fate of such environmental pollutant. In this research,Hydrilla verticillata(L. f.) Royle was selected and their attached BPA degrading epiphytic bacteria attached were isolated. Among the 22bacteria strains, the BPA removal rates were from 11.46% to 25.06% with the inoculum density at 1×10-8cell/mL and culture at 37℃ for 72h. The most effective bacteria strains, B12, B14and B23 were identified asLysinibacillus sp.,Brevibacterium sp. andOchrobactrum sp., respectively, according to the results of 16S rDNA sequencing and morphological, physiological and biochemical tests. But aseptic seedlings ofH. verticillata significantly decreased their BPA removal rates after the addition with B12, B14and B23 (P<0.05). Natural seedlings of such species surprisingly increased about 5% in BPA removal after partially removing their epiphyte with physical methods. All the results indicated that epiphytic bacteria of submerged plant can remove BPA, although their contributions (about 23%) are less than the host plants in the submerged macrophytes-epiphyte associations.%沉水植物附生细菌可能具有降解转化水体中双酚 A(BPA)能力从而影响该污染物在环境中的归趋.以轮叶黑藻为代表,分离筛选其BPA降解附生菌,结果共获得22株,在接种量为1×108个/mL,37℃下72h对BPA的去除率为11.46%~25.06%.选择降解率最高的3株细菌B12、B14和B23,采用16S rDNA鉴定,结合生理生化反应和形态观察,3株细菌分别为属于Lysinibacillus sp.(杆菌属),Brevibacterium sp.(短杆菌属)和Ochrobactrum sp.(苍白杆菌属).将3株菌株添加至轮叶黑藻无菌苗体系中,发现BPA去除率显著下降(P<0.05).物理去除部分野生轮叶黑藻表面部分附生细菌后,BPA去除率反而上升(约5%).综合本研究结果,沉水植物附生细菌具有降

  6. Explosion containment device

    Science.gov (United States)

    Benedick, William B.; Daniel, Charles J.

    1977-01-01

    The disclosure relates to an explosives storage container for absorbing and containing the blast, fragments and detonation products from a possible detonation of a contained explosive. The container comprises a layer of distended material having sufficient thickness to convert a portion of the kinetic energy of the explosion into thermal energy therein. A continuous wall of steel sufficiently thick to absorb most of the remaining kinetic energy by stretching and expanding, thereby reducing the momentum of detonation products and high velocity fragments, surrounds the layer of distended material. A crushable layer surrounds the continuous steel wall and accommodates the stretching and expanding thereof, transmitting a moderate load to the outer enclosure. These layers reduce the forces of the explosion and the momentum of the products thereof to zero. The outer enclosure comprises a continuous pressure wall enclosing all of the layers. In one embodiment, detonation of the contained explosive causes the outer enclosure to expand which indicates to a visual observer that a detonation has occurred.

  7. Mutagenesis of a Hydrocarbon Degrading and Biosurfactants-Producing Bacteria with Low Energy Ions%低能离子诱变产表面活性剂的烃降解菌研究

    Institute of Scientific and Technical Information of China (English)

    向廷生; 马飞; 张祥胜

    2012-01-01

    为有效治理石油污染土壤,从长期遭受石油污染的土壤中筛选出一株烃降解菌8-11作为出发菌,利用低能N+注入烃降解菌进行诱变,在能量为20 keV、剂量为90×2.6×1013 ions/cm2条件下筛选出一株高效烃降解菌——诱变菌23.原油摇瓶发酵实验表明诱变菌对原油的降解率达到74%;降解后原油的全烃气相色谱图显示,经过7d的作用,原油中的正构烷烃完全降解.诱变菌23能够产生大量的生物表面活性物质,傅里叶红外光谱分析表明其产生的生物活性物质为糖脂类化合物,该糖脂类生物表面活性剂能使发酵液的表面张力从空白对照的56.1 mN/m降低为29.3 mN/m.研究表明诱变菌23具有较高的烃降解能力,能有效降低表面张力,具有较大的应用潜力.%To remediate petroleum-contaminated soil effectively, bacteria 8-11, isolated from oil contaminated soil in Daqing Oilfield, was implanted with low energy N+(90×2.6×l013 ions/cm2 and 20 keV), and finally the strain of mutant 23 which could efficiently degrade oil was obtained. The degradation of petroleum hydrocarbon by mutant 23 was investigated, and results indicated that the biodegradation rate of total petroleum hydrocarbon (TPH) reached 74% after 7d treatment, and n-alkane of oil composition was degraded completely. Biosurfactants, which produced by mutant 23 and mainly indentified as glycolipid by FT-IR analysis, could reduce the surface tension of culture from 56.1 mN/m (CK) to 29.3 mN/m. Characteristics of bacterial mutant 23 suggested its potential application in bioremediation of petroleum-contaminated soil.

  8. Isolation and Degrading Properties of PAHs-Degrading Bacteria from the Contaminated Soil of a Coking Plant%焦化厂污染土壤中多环芳烃降解菌的分离及降解特性

    Institute of Scientific and Technical Information of China (English)

    卢晓霞; 吴淑可; 侯珍; 李秀利; 陈超琪; 吴蔚

    2011-01-01

    Aimed at bioremediation of the soil contaminated by a coking plant, polycyclic aromatic hydrocarbons (PAHs)-degrading bacteria were isolated from the soil and their degrading properties were studied. Streak-plating method was applied to isolate the PAHs-degrading bacteria using fluorine (3 rings), fluoranthene (4 rings) and benzo[b]-fluoranthene {5 rings) as the sole carbon source (1 mg/L), respectively. Self-made respiration flasks were employed to study the mineralization of l4C-labelled phenanthrene (5 μL/100 mL 40-60 mCi/mmol) by the obtained bacteria. Using coal-tar oil as the carbon source (1 μL/mL), batch experiments were performed to investigate the degradation of 19 PAHs by the bacteria. The obtained four strains of bacteria were identified as Bordetella sp. L1, Ochrobactrum sp. L1, Microbacterium sp. L1 and Rhodococcus sp. L1, respectively. After three weeks of mineralization experiments, the l4C-labelled phenanthrene was almost converted to I4CO, by Microbacterium sp. L1, about 60% converted by Rhodococcus sp. L1, while Bordetella sp. L1 and Ochrobactrum sp. L1 were not able to mineralize l4C-labelled phenanthrene. After five weeks of batch experiments, degradation of PAHs was most significant in the system enriched with Bordetella sp. L1, followed by Ochrobactrum sp. L1 and Microbacterium sp. L1. In the system of Rhodococcus sp. L1, the concentrations of some PAHs increased, probably due to the production of biosurfactant. It was suggested that the obtained four strains of bacteria have application potential in the bioremediation of PAHs-contaminated soil. Fig 3, Table l.Ref27%分别以芴(3环)、荧蒽(4环)和苯并[b]荧蒽(5环)为唯一碳源(1 mg/L),采用平板划线法对某焦化厂污染土壤中的多环芳烃降解菌进行分离通过自制的呼吸器,研究所得多环芳烃降解菌对14C-菲(5 μL/100 mL 40~60 mCi/mmol)的矿化情况;通过序批试验,以煤焦油为碳源(1μL/mL),研究这些菌对19种多环芳烃的降解

  9. Bacterial degradation of detergent compounds.

    Science.gov (United States)

    Goodnow, R A; Harrison, A P

    1972-10-01

    A survey for surfactant degradation among aerobic bacteria has been undertaken. Tests have been made in peptone medium where such a degradation, if it occurs, will be gratuitous. Tallow-alkyl-sulfate, alkyl-ethoxylate-sulfate, and linear-alkyl-benzene-sulfonate were used. Forty-five strains of 34 species in 19 genera degrade one or more of these detergent compounds. With some species, the surfactant inhibits degradation without inhibiting growth, whereas with one species slight degradation took place even at a toxic concentration of surfactant.

  10. A real explosion: the requirement of steam explosion pretreatment.

    Science.gov (United States)

    Yu, Zhengdao; Zhang, Bailiang; Yu, Fuqiang; Xu, Guizhuan; Song, Andong

    2012-10-01

    The severity factor is a common term used in steam explosion (SE) pretreatment that describes the combined effects of the temperature and duration of the pretreatment. However, it ignores the duration of the explosion process. This paper describes a new parameter, the explosion power density (EPD), which is independent of the severity factor. Furthermore, we present the adoption of a 5m(3) SE model for a catapult explosion mode, which completes the explosion within 0.0875 s. The explosion duration ratio of this model to a conventional model of the same volume is 1:123. The comparison between the two modes revealed a qualitative change by explosion speed, demonstrating that this real explosion satisfied the two requirements of consistency, and suggested a guiding mechanism for the design of SE devices.

  11. 低温环境中 T-2毒素降解菌的分离鉴定及特性研究%Isolation and Identification of T-2 Toxin Degradable Bacteria and Its Characteristic in Low Temperature Environment

    Institute of Scientific and Technical Information of China (English)

    吕鹏莉; 陈海燕; 王雅玲; 孙力军; 张春辉; 施琦; 徐德峰; 叶日英

    2015-01-01

    T-2 toxin degradable bacteria( TTDB)in low-temperature environment was Isolated and screened and found out its biochemical characteristics,and probed deeply into its microbiological and biochemical features of simi-lar and dissimilar points,to provide reference for biochemical judgment during the inspection with TTDB. Aiming at exposure of low concentration T-2 toxin standard sample to - 20 ℃ low temperature environment T-2 standard toxin of low concentration,LC-MS / MS was adopted to quantitatively analyze the residual amount of T-2 toxin,using NA and PDA media,and isolated five degradable bacteria,they were identified as Bacillus vallismortis,Pseudomonas geniculata,Staphylococcus nepalensis,Bacillus cereus,and Enterobacter cloacae according to 16S rDNA and their bio-chemical characteristics,all can degrate low concentration T-2 toxin in different degrees at - 20 ℃ ,among them B. cereus had the strongest degradation with the rate as high as 91% . They have many similarities in physicochemical property,all of them cannot utilize D-tagatose(dTAG),exhibited negative to ELLMAN. B. vallismortis Bp1234-7, P. geniculata Bp24-4,S. nepalensis Bp124-5 and E. cloacae Bp123-7 decompose D-glucose,while B. cereus Bp123-7 does not.%离筛选低温环境中 T-2毒素的降解菌并探明其生化特性,探究 T-2毒素降解微生物生化特性异同点,为 T-2毒素降解微生物的检验提供生化判断参考。针对暴露于-20℃低温环境中的低浓度 T-2毒素标准品,采用 LC-MS/ MS 定量分析 T-2毒素残留量,利用营养琼脂培养基(NA)和马铃薯葡萄糖琼脂培养基(PDA)共分离出5株降解菌,16S rDNA 结合生化鉴定结果为死谷芽胞杆菌(Bacillus vallismortis)、蜡状芽胞杆菌(Bacil-lus cereus)、阴沟肠杆菌( Enterobacter cloacae)、弯曲假单胞菌( Pseudomonas geniculata)和尼泊尔葡萄球菌(Staphylococcus nepalensis)。这些分离株在-20℃条件下对低浓度 T-2毒素均

  12. The growth and petroleum degradation characteristics of bacteria in coastal beach%一株沿海滩涂细菌的降油及生长特性研究

    Institute of Scientific and Technical Information of China (English)

    王斌; 周雅飞; 张兴; 郑峰伟; 高钰婷; 何洁; 周一兵

    2012-01-01

    The bacteria that have capability to degrade crude oil were isolated from the coastal beach polluted by crude oil with the basal medium crude oil as only carbon source. The original degradation rate of diesel oil by the i-solated strains was determined. In addition, the degradation rate of diesel oil by the isolated strain was determined with the basal medium diesel oil including different concentration of glucose (0, 1,2,4,8, 16 g/L) , the different concentrations of yeast extract, peptone, carbamide, (NH4)2SO4( according to the content of nitrogen; 0. 5, 1,2 g/L) and NaH2P04(0, 4, 8 , 16 g/L) . The isolated strain was identified and growth characteristics were studied. The results showed: 5 strains bacteria grew on the basal medium crude oil as only carbon source. One of these stains had a maximum original degradation rate (19.0% ) and was numbered as Y-3. The degradation rate of Y-3 increased and reached to 79. 9% in the diesel oil medium supplemented with glucose (4 g/L). The degradation rate was increased in Y-3 in addition of yeast extract and peptone also, but not notable in added urea, (NH4)2S04 and NaH2PO4. The Y-3 was identified as Pseudomonas putida according to the result of the morphology, physiological characteristics and 16S rDNA sequence analysis. The Y-3 had fitting growth at temperature of 30 ℃ , pH 8, and NaCl concentration of 0-30 g/L.%采用以原油为唯一碳源的基础培养基,从原油污染的沿海滩涂土壤中分离筛选具有降油性能的细菌;采用柴油培养基测定分离菌株对柴油的原始降解率;通过在柴油培养基中添加不同浓度的葡萄糖(0、1、2、4、8、16 g/L),及不同浓度的酵母膏、蛋白胨、尿素、硫酸铵(以氮计,浓度为0.5、1、2 g/L)和磷酸二氢钠(0、4、8、12 g/L)后,测定分离菌株的降油性能;鉴定分离菌株并研究其生长特性.结果表明:共分离到5株能以原油为唯一碳源生长的细菌,其中1株原始降油率最高(19.0

  13. 耐盐石油烃降解菌的筛选鉴定及其特性研究%Isolation,Identification and Characterization of Halotolerant Petroleum-degrading Bacteria

    Institute of Scientific and Technical Information of China (English)

    吴涛; 谢文军; 依艳丽; 李小彬; 王君; 胡相明

    2012-01-01

    To obtain efficient halotolerant petroleum-degrading bacteria,39 bacteria strains were isolated from 30 petroleum contaminated saline soil samples in Yellow River Delta,an important base of petroleum production in China.One bacterium(strain BM38) was found to efficiently degrade crude oil in highly saline environments based on a series of liquid and soil incubation experiments.According to its morphology,physiochemical characteristics and 16S rDNA sequence analysis,this strain was identified as Pseudomonas putida.Moreover,a series of liquid incubation experiments were conducted to investigate its characteristics such as halotolerance,biosurfactants production and degrading efficiency for various hydrocarbons.The salt resistance test demonstrated that strain BM38 grew well at NaCl concentrations ranging from 0.5% to 6.0%.Petroleum degradation experiments showed that strain BM38 could degrade 73.5% crude oil after 7 days in a liquid culture medium containing 1.0% NaCl and remove more than 40% of total petroleum hydrocarbons after 40 days in the soil with 0.22% and 0.61% of salinity,these results proved that the strain was effective in removing petroleum hydrocarbons.Strain BM38 could produce a bioemulsifier in a liquid culture medium.The NaCl concentration had the significant effect on the EI24 of fermentation broth,which decreased sharply if the NaCl concentration was greater than 1.0%.However,the EI24 of BM38 was still quite high in the presence of 2.0% of NaCl,and the value was 61.0%.Furthermore,this strain was also able to grow in mineral liquid media amended with hexadecane,toluene,phenanthrene,isooctane and cyclohexane as the sole carbon sources.Among these hydracarbons,strain BM38 showed relatively high ability in degrading n-alkanes and aromatic hydracarbons.The results indicated that strain BM38 had potential for application in bioremediation of petroleum-contaminated saline soil.%为得到高效耐盐石油烃降解菌,从黄河三角洲石油污染

  14. Explosives Safety Competency Study

    Science.gov (United States)

    2010-07-13

    Munitions Systems Journeyman CDC—AFSC 2W051 Combat Ammunition Planning and Production—AFCOMAC Munitions Systems Craftsman Course—AFSC 2W071 Combat...Ammunition Planning and Production—AFCOMAC Munitions Systems Craftsman Course—AFSC 2W071 Navy Basics of Naval Explosives Hazard Control—AMMO-18 b

  15. Explosions during galaxy formation

    Directory of Open Access Journals (Sweden)

    Hugo Martel

    2001-01-01

    Full Text Available As an idealized model of the e ects of energy release by supernovae during galaxy formation, we consider an explosion at the center of a halo which forms at the intersection of laments in the plane of a cosmological pancake by gravitational instability during pancake collapse. Such halos resemble the virialized objects found in N{body simulations in a CDM universe and, therefore, serve as a convenient, scale{free test{bed model for galaxy formation. ASPH=P3M simulations reveal that such explosions are anisotropic. The energy and metals are channeled into the low density regions, away from the pancake plane. The pancake remains essentially undisturbed, even if the explosion is strong enough to blow away all the gas lo- cated inside the halo at the onset of the explosion and reheat the IGM surrounding the pancake. Infall quickly replenishes this ejected gas and gradually restores the gas fraction as the halo mass continues to grow. Estimates of the collapse epoch and SN energy{release for galaxies of di erent mass in the CDM model can re- late these results to scale{dependent questions of blow{out and blow{away and their implication for early IGM heating and metal enrichment and the creation of dark{matter{dominated dwarf galaxies.

  16. Conventional Weapons Underwater Explosions

    Science.gov (United States)

    1988-12-01

    te that the heat of detonation (the energy available per mass of explosive) is an increasing function of the aluminum content. As shown in Table 2...the heat of detonation of RDX is 6.15 MJ/kg; addition of 30 wt % Al increases this to 10.12 - a factor of 1.64. Fig. 12 indicates a bubble energy

  17. The Information Explosion.

    Science.gov (United States)

    Kuhns, William

    Three facets of the media--events, myths, and sales pitches--constitute the most important lines of force taken by the information bombardment which all of us encounter and are influenced by every day. The focus of this book is on the changes created and hastened by this information explosion of the media bombardment: how we can live with them,…

  18. Portable raman explosives detection

    Energy Technology Data Exchange (ETDEWEB)

    Moore, David Steven [Los Alamos National Laboratory; Scharff, Robert J [Los Alamos National Laboratory

    2008-01-01

    Recent advances in portable Raman instruments have dramatically increased their application to emergency response and forensics, as well as homeland defense. This paper reviews the relevant attributes and disadvantages of portable Raman spectroscopy, both essentially and instrumentally, to the task of explosives detection in the field.

  19. 海洋石油降解菌的筛选及复合菌系的构建%Screening of Marine Crude Oil-degrading Bacteria and Construction of Microbial Consortium

    Institute of Scientific and Technical Information of China (English)

    吴秉奇; 刘淑杰; 陈福明; 周楚莹

    2016-01-01

    For the purpose of controlling marine oil contamination by biological treatment technology,using crude oil acting as sole carbon source and enrichment and spread plate method,high-performance oil-grading bacteria were isolated from five sampling points in the sea near Shenzhen,and bacterial consortium was constructed by mixing and orthogonal experiments. Physiological and biochemical experiments and 16S rRNA gene sequence analysis were used to identify the strains. Single-factor experiment was employed to optimize the conditions of oil biodegradation by the consortium,and gas chromatography and mass spectrum(GC-MS)were utilized to analyze its biodegradation characteristics. The results showed that 22 strains of high-performance oil-degrading bacteria were isolated,and the degrading rates varied from 34.5% to 52.2%. The degrading rate by microbial consortium SQ1 composed of S1-30,S1-38,and S2-13 strains reached 68.3%. These three strains were identified as Corynebacterium sp.,Dietzia sp. and Labrenzia sp. SQ1 was able to degrade the oil by 73.5% in 11 days under optimized conditions,referring to 30℃,pH7.6,oil concentration 20 g/L. The GC-MS results showed that consortium SQ1 was able to degrade the total alkane by 91.7%,and the more refractory C21-C35 by nearly 100%. The study shows that consortium SQ1 has great application potential of bioremediation for marine oil contamination.%为采用生物法治理海洋石油污染,以原油为唯一碳源,从深圳海域5个采样点取样,通过富集、涂布平板分离高效石油降解菌,并以复配、正交等方式构建石油降解复合菌系;通过生理生化实验和16S rRNA 基因序列分析对菌株进行鉴定;采用单因素实验对复合菌系降解石油的条件进行优化,并使用气相色谱-质谱法(GC-MS)研究其对石油的降解特性。结果显示,共分离得到22株高效石油降解菌,对石油的降解率为34.5%-52.2%;由 S1-30、S1-38和 S2-13

  20. Isolation of Cellulose Degradable-Bacteria from Giant Panda's Intestines and Its enzymatic Characterization%1株大熊猫肠道纤维素降解菌的分离鉴定及其酶学性质

    Institute of Scientific and Technical Information of China (English)

    赵珊; 吕雯婷; 刘杰; 宋亮丽; 张海峰; 孙小琴; 颜其贵

    2015-01-01

    Using sodium carboxymethylcellulose as unique carbon source and Congo red staining method,cellulose degradable bacterial strains were isolated from giant panda's fecal samples,and studied on their enzymatic characteris-tics. Strain A1 with high enzyme activity was isolated,it was identified as Bacillus cereus morphologically and through BD PhoenixTM-100 full-automatic bacteria identification instrument. Growth condition and enzymatic activity tests showed that the optimal growth temperature of the strain was 37 ℃. 0. 5%NaCl and pH at 7. 0 the maximum activity of endo-glucanase was at 0. 139 IU/mL,exo-glucanase 0. 074 IU/mL,beta-glucosidase 0. 126 IU/mL and the total ernzymatic activity was 0. 108 5 IU/mL respectively. This research enriched the species of cellulose degrading-bacteri-a in giant panda's intestines and strain A1 provided strain source for the following up study on how the giant panda di-gest and utilize bamboo fiber.%以羧甲基纤维素钠为唯一碳源,利用刚果红染色法,从大熊猫粪便内筛选具有降解纤维素能力的菌株,并研究其酶学特性。分离获得1株酶活力较高的菌株A1,通过形态学和BD PhoenixTM-100全自动细菌鉴定仪鉴定为蜡样芽胞杆菌( Bacillus cereus)。菌株A1最适生长条件和酶活力测定表明,其最适生长温度为37℃,NaCl浓度为0.5%,pH值为7.0,内切葡聚糖苷酶、外切葡聚糖苷酶、β-葡萄糖苷酶和总酶活的最大值分别为0.139、0.074、0.126、0.1085 IU/mL。丰富了大熊猫肠道纤维素降解菌的种类,为后续研究大熊猫如何消化利用竹纤维提供了菌源。

  1. The flexibility of UV-inducible mutation in Deinococcus ficus as evidenced by the existence of the imuB-dnaE2 gene cassette and generation of superior feather degrading bacteria.

    Science.gov (United States)

    Zeng, You-Hong; Shen, Fo-Ting; Tan, Chen-Chung; Huang, Chieh-Chen; Young, Chiu-Chung

    2011-12-20

    The lexA-imuB-dnaE2 gene cassette contributing to the TLS (translesion synthesis) polymerase activity and can easily cause mutation after DNA damage in many bacteria. But it was previously thought that TLS polymerase activity was unlikely to exist in the radio-resistant genus Deinococcus. In our preliminary studies, the lexA-imuB-dnaE2 gene cassette was found in a newly isolated feather-degrading Deinococcus ficus. Here we have attempted to determine the imuB gene sequence from another Deinococcus species namely D. grandis, by using the newly designed primers. The destroying of either imuB or dnaE2 gene in D. ficus leads to the increase in UV sensitivity and decrease in UV-induced mutations, which demonstrated the existence of TLS polymerase activity in D. ficus. In the presence of lexA-imuB-dnaE2, it is possible to obtain mutants with various keratinolytic activities after UV exposure. The keratinolytic activity of mutant strain CC-ZG207 increased by approximately twofold during growth in liquid feather medium. In contrast, the mutant strain CC-ZG227 showed only half of the keratinolytic activity compared with the wild type strain. By utilizing SDS-PAGE and zymogram profile analysis, the change in the protease activity was observed. We have proposed that the superior mutants of D. ficus can be created under UV stress, which is mediated by the lexA-imuB-dnaE2 gene cassette.

  2. Screening of alginate degrading bacteria and optimization of fermentation conditions%一株高效褐藻胶降解菌的筛选及其发酵条件的优化

    Institute of Scientific and Technical Information of China (English)

    王霁宁; 严孝强; 杜宗军

    2012-01-01

    针对8株已知有褐藻胶降解酶活性的菌株,以褐藻酸钠为唯一碳源,驯化培养后筛选得到一株高效降解菌中华黄海杆菌QM42.经过发酵培养实验,确定其最佳产酶条件(w/v):以蛋白胨为氮源,以褐藻酸钠为碳源,褐藻酸钠浓度0.4%~0.7%,培养盐度5%~7%,培养初始pH值为7,培养温度31℃,150r/min摇床发酵72h,粗酶液酶活力达到9.74U/mL.%A screening work was carried out to get marine bacterium with high alginate lyase activity by using alginate as sole source of carbon. Strain QM42 was selected for further studies among the 8 alginate-degrading bacteria strains. Results showed that the optimal carbon and nitrogen sources for marine bacterium QM42 to produce extracellular alginate lyase were alginate and peptone, respectively. The optimal concentration of carbon source was 0.4%~0.7%(w/v). The culture temperature was 311. The initial pH value of the liquid. medium was about 7, and the salinity was 5%~7%. The optimal harvest time for extracellular alginate lyase was about 72h with 150r/min rotation. Under such conditions the marine bacterium QM42 could produce 9.74U/ml alginate lyase in crude fermentation medium.

  3. Effects of oral administration of metronidazole and doxycycline on olfactory capabilities of explosives detection dogs.

    Science.gov (United States)

    Jenkins, Eileen K; Lee-Fowler, Tekla M; Angle, T Craig; Behrend, Ellen N; Moore, George E

    2016-08-01

    OBJECTIVE To determine effects of oral administration of metronidazole or doxycycline on olfactory function in explosives detection (ED) dogs. ANIMALS 18 ED dogs. PROCEDURES Metronidazole was administered (25 mg/kg, PO, q 12 h for 10 days); the day prior to drug administration was designated day 0. Odor detection threshold was measured with a standard scent wheel and 3 explosives (ammonium nitrate, trinitrotoluene, and smokeless powder; weight, 1 to 500 mg) on days 0, 5, and 10. Lowest repeatable weight detected was recorded as the detection threshold. There was a 10-day washout period, and doxycycline was administered (5 mg/kg, PO, q 12 h for 10 days) and the testing protocol repeated. Degradation changes in the detection threshold for dogs were assessed. RESULTS Metronidazole administration resulted in degradation of the detection threshold for 2 of 3 explosives (ammonium nitrate and trinitrotoluene). Nine of 18 dogs had a degradation of performance in response to 1 or more explosives (5 dogs had degradation on day 5 or 10 and 4 dogs had degradation on both days 5 and 10). There was no significant degradation during doxycycline administration. CONCLUSIONS AND CLINICAL RELEVANCE Degradation in the ability to detect odors of explosives during metronidazole administration at 25 mg/kg, PO, every 12 hours, indicated a potential risk for use of this drug in ED dogs. Additional studies will be needed to determine whether lower doses would have the same effect. Doxycycline administered at the tested dose appeared to be safe for use in ED dogs.

  4. Study on the Identification and Characteristics of a Strain of Hydrophobic alkanae Degrading Bacteria%一株疏水性解烃菌的分离鉴定及特性研究

    Institute of Scientific and Technical Information of China (English)

    谭洪; 唐赟; 杨艳; 何春娟; 杨牟

    2012-01-01

    A HH1 strain of hydrophobic alkane degrading bacteria HH1 was screened from petroleum-contaminated soils in Nanchong oil refinery. Through morphological, physiological and biochemical analysis,HH1 was catalasepositive, oxidase-negative, Gram-negative, peritrichous, with straight rods, no capsules, no endospores,0.5 - 0.8urn in diameter and 0.9 -2.0μm in length. And 1316bp of 16S rRNA sequences were amplified from HH1. By blast analysis, 16S rRNA showed 99.6% identity with Serratia proteamaculans wg-2 16S rRNA gene (accession no. EU627690) and Serratia proteamaculans 568 16S rRNA gene (accession no. CP000826). HH1 was finally identified as Serratia proteamaculans. This paper studied on the cell-surface hydrophobicity of HH1 by microorganism ad- hering to hydrocarbon (MATH) , the results showed that the cell-sufrace hydrophobicity of HH1 was 52.2% , and the cell-sufraee hydrophobieity changed with the variation of incubation time. The n-dodeeane degradation was 66. 1% after HH1 was growing on in hydrocarbon degradation medium with 1% (V/V) of n-docosane at 28℃ and 180r/min for 4d. It had potential in bioremediation of oil contaminated environment.%从南充市炼油厂附近被石油污染的土壤中分离获得一株疏水性烷烃降解菌HH1.通过形态学、生理生化特性研究发现菌株HHl为革兰氏阴性,中杆状,周生鞭毛,无荚膜,无芽孢,接触酶阳性,氧化酶阴性,菌体大小0.5—0.8μm×0.9—2.0μm;16SrRNA进化树分析发现HH1与Serratia proteamaculans wg-2和Serratia proteamaculans568的相似性分别为99.6%,菌株HHl归属为变形斑沙雷氏菌(Serratia proteamaculans).同时,采用微生物粘着碳烃化合物法(MATH)对菌株HHl表面疏水性进行研究,结果表明:菌株HHl的表面疏水性为52.2%,并随着培养时间增加,表面疏水性不断减小.在含有1%(V/V)正十二烷的无机盐培养基中接人1%种子液,于28

  5. 一株正二十二烷降解菌的分离及鉴定%Isolation and Identification on A Strain of N-docosane Degrading Bacteria

    Institute of Scientific and Technical Information of China (English)

    谭洪; 彭超; 唐赟; 刘亮; 杨艳

    2011-01-01

    [目的]研究正二十二烷降解菌的分离及鉴定.[方法]以正二十二烷无机盐培养基为选择培养基,从南充市炼油厂曝气池的回流污泥中筛选出1株高效降解长链烷烃的菌株,命名为T2,并对其进行形态学观察、生理生化鉴定和16S rDNA比对以及17种药物敏感试验.[结果]T2菌株鉴定为沙雷氏菌属.在正二十二烷浓度为1%(W/V)无机盐培养基中接入1%种子液,并在30℃和180 r/min摇瓶震荡下培养6d,正二十二烷降解率可达70%.药敏试验表明,T2菌株对链霉素、卡拉霉素、大观霉、氯霉素、氧氟沙星、庆大霉素、恩诺沙星、新霉素、阿米卡星、复方新诺明高度敏感;对环丙沙星为中度敏感;对青霉素G、氨苄青霉素、四环素、乙酰螺旋霉素、克林霉素、阿莫西林不敏感.[结论]该研究为石油污染的生物处理提供良好的微生物菌种资源.%[Objective] The aim was to study the isolation and identification of n-docosane degrading bacteria. [ Method ] With the mineral salt medium with the n-docosane as the selecting medium, a strain that could degrade the long-chain alkane effectively was screen out from the return sludge in the aeration pool of Nanchong Oil Refinery Plant, named as T2, and was conducted for the morphological observation, physiological and biochemical identification and 16S rDNA comparison, and the sensitive test with 17 kinds of drugs. [Result] The strain T2 was identified as Ser-ratia sp. The N-docosane degradation was 70% after 1% seed liquid of the strain was inoculated on the mineral salt medium with 1% ( W/V) of n-docosane and cultured at 30 ℃ and 180 r/min for 6 d. The drug the sensitivity tests showed that the T2 strain was sensitive to Streptomycin, Kanamycin, Spectinomycin, Chloromycetin, Ofloxacin, Gentamicin, Enrofloxacin, Neomycin, Amikaci and Sulfamethoxazole; intermediately sensitive to Ciprofloxacin; not sensitive to Penicillin G, Ampicillin, Tetracycline

  6. Characteristic Research on Evaporated Explosive Film

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    The evaporation source of evaporated explosive was designed and improved based on the inherent specialties of explosive. The compatibility of explosives and addition agent with evaporation vessels was analyzed. The influence of substrate temperature on explosive was analyzed, the control method of substrate temperature was suggested. The influences of evaporation rate on formation of explosive film and mixed explosive film were confirmed. Optimum evaporation rate for evaporation explosive and the better method for evaporating mixed explosive were presented. The necessary characteristics of the evaporated explosive film were obtained by the research of the differences between the evaporated explosive and other materials.

  7. Explosive bulk charge

    Energy Technology Data Exchange (ETDEWEB)

    Miller, Jacob Lee

    2015-04-21

    An explosive bulk charge, including: a first contact surface configured to be selectively disposed substantially adjacent to a structure or material; a second end surface configured to selectively receive a detonator; and a curvilinear side surface joining the first contact surface and the second end surface. The first contact surface, the second end surface, and the curvilinear side surface form a bi-truncated hemispherical structure. The first contact surface, the second end surface, and the curvilinear side surface are formed from an explosive material. Optionally, the first contact surface and the second end surface each have a substantially circular shape. Optionally, the first contact surface and the second end surface consist of planar structures that are aligned substantially parallel or slightly tilted with respect to one another. The curvilinear side surface has one of a smooth curved geometry, an elliptical geometry, and a parabolic geometry.

  8. Imaging Detonations of Explosives

    Science.gov (United States)

    2016-04-01

    of a high- pressure helium tank , a dump valve that exhausts the high- pressure gas to the gun breech, and a 25-mm-diameter, unrifled, 4.9-m-long gun...14. ABSTRACT The techniques and instrumentation presented in this report allow for mapping of temperature, pressure , chemical species, and...measurement in the explosive near- to far-field (0–500 charge diameters) of surface temperatures, peak air-shock pressures , some chemical species

  9. Overview of Explosive Initiators

    Science.gov (United States)

    2015-11-01

    Primary Explosives Lead Azide Lead azide came to prominence around the 1920’s, owing largely to its unique blend of performance and...as its basic nature does not encourage lead azide’s tendency UNCLASSIFIED Approved for public release; distribution is unlimited. 5 toward...fig. 4, top). This fuse is usually a long, flexible plastic or rubber tube filled with a pyrotechnic composition such as black powder, allowing

  10. Explosive Turbulent Magnetic Reconnection

    OpenAIRE

    Higashimori, Katsuaki; Yokoi, Nobumitsu; Hoshino, Masahiro

    2013-01-01

    We report simulation results for turbulent magnetic reconnection obtained using a newly developed Reynolds-averaged magnetohydrodynamics model. We find that the initial Harris current sheet develops in three ways, depending on the strength of turbulence: laminar reconnection, turbulent reconnection, and turbulent diffusion. The turbulent reconnection explosively converts the magnetic field energy into both kinetic and thermal energy of plasmas, and generates open fast reconnection jets. This ...

  11. Biodegradation of Complex Bacteria on Phenolic Derivatives in River Water

    Institute of Scientific and Technical Information of China (English)

    GUANG-HUA LU; CHAO WANG; ZHE SUN

    2009-01-01

    Objective To isolate, incubate, and identify 4-chlorophenol-degrading complex bacteria, determine the tolerance of these bacteria to phenolic derivatives and study their synergetic metabolism as well as the aboriginal microbes and co-metabolic degradation of mixed chlorophenols in river water. Methods Microbial community of complex bacteria was identified by plate culture observation techniques and Gram stain method. Bacterial growth inhibition test was used to determine the tolerance of complex bacteria to toxicants. Biodegradability of phenolic derivatives was determined by adding 4-chlorophenol-degrading bacteria in river water. Results The complex bacteria were identified as Mycopiana, Alcaligenes, Pseudvmonas, and Flavobacterium. The domesticated complex bacteria were more tolerant to phenolic derivatives than the aboriginal bacteria from Qinhuai River. The biodegradability of chlorophenols, dihydroxybenzenes and nitrophenols under various aquatic conditions was determined and compared. The complex bacteria exhibited a higher metabolic efficiency on chemicals than the aboriginal microbes, and the final removal rate of phenolic derivatives was increased at least by 55% when the complex bacteria were added into river water. The metabolic relationship between dominant mixed bacteria and river bacteria was studied. Conclusion The complex bacteria domesticated by 4-chlorophenol can grow and be metabolized to take other chlorophenols, dihydroxybenzenes and nitrophenols as the sole carbon and energy source. There is a synergetic metabolism of most compounds between the aboriginal microbes in river water and the domesticated complex bacteria. 4-chlorophenol-degrading bacteria can co-metabolize various chlorophenols in river water.

  12. Big bacteria

    DEFF Research Database (Denmark)

    Schulz, HN; Jørgensen, BB

    2001-01-01

    A small number of prokaryotic species have a unique physiology or ecology related to their development of unusually large size. The biomass of bacteria varies over more than 10 orders of magnitude, from the 0.2 mum wide nanobacteria to the largest cells of the colorless sulfur bacteria......, Thiomargarita namibiensis, with a diameter of 750 mum. All bacteria, including those that swim around in the environment, obtain their food molecules by molecular diffusion. Only the fastest and largest swimmers known, Thiovulum majus, are able to significantly increase their food supply by motility...... and by actively creating an advective flow through the entire population. Diffusion limitation generally restricts the maximal size of prokaryotic cells and provides a selective advantage for mum-sized cells at the normally low substrate concentrations in the environment. The largest heterotrophic bacteria...

  13. Anaerobic bacteria

    Science.gov (United States)

    Brook I, Goldstein EJ. Diseases caused by non-spore forming anaerobic bacteria. In: Goldman L, Schafer AI, eds. Goldman's Cecil Medicine . 25th ed. Philadelphia, PA: Elsevier Saunders; 2015:chap 297. Stedman's Online ...

  14. Nanosensors for trace explosive detection

    OpenAIRE

    2008-01-01

    Selective and sensitive detection of explosives is very important in countering terrorist threats. Detecting trace explosives has become a very complex and expensive endeavor because of a number of factors, such as the wide variety of materials that can be used as explosives, the lack of easily detectable signatures, the vast number of avenues by which these weapons can be deployed, and the lack of inexpensive sensors with high sensitivity and selectivity. High sensitivity and selectivity, co...

  15. 纤维素降解菌的分离、鉴定及其产酶特性研究%Research on Isolation, Identification and Enzyme Production Characterization of Cellulose Degrading Bacteria

    Institute of Scientific and Technical Information of China (English)

    汪彬; 郭照辉; 杜东霞

    2016-01-01

    从纤维素富集的环境中分离到3株能以羧甲基纤维素钠(CMC-Na)为唯一碳源的纤维素降解菌,采用纤维素-刚果红染色法进一步筛选,获得透明圈较大的菌株1株,命名为为 B1。经菌落、菌体形态观察、生理生化实验及分子生物学鉴定,初步确定为蜡样芽胞杆菌(Bacillus cereus),该菌株表现出了较高的滤纸崩解能力和较高的纤维素酶活力。通过培养条件的优化,发现该菌株在起始 pH 值为5.0的培养基中,37℃培养36 h,其纤维素酶活力可达64.22 U/mL。%Three cellulose degrading bacteria, which can be isolated from cellulose enriched environments, were isolated with carboxymethylcellulose sodium (CMC-Na) as sole carbon source, CMC-Congo red staining method was used to further screen, and one strain with larger transparent circle was obtained, named as B1. Through the identification of bacterial colony, cell morphology observation, physiology and biochemistry experiment, and molecular biology, initially identified as Bacillus cereus, the strain showed a high ability of disintegration of filter paper and higher cellulase activity. Through the optimization of culture conditions, it was found that the strain was in the culture medium with the initial pH value of 5.0, temperature 37℃ and after 36 hours, the cellulase activity could reach 64.22 U/mL.

  16. 利用DGGE-菌落原位杂交法分离土壤中精喹禾灵降解菌%Isolation of Quizalofop-p-ethyl-degrading Bacteria from Soil by DGGE-Colony in situ Hybridization

    Institute of Scientific and Technical Information of China (English)

    吕欣; 彭霞薇; 呼庆; 马安周; 江泽平; 魏远

    2013-01-01

    Naturally occurring bacteria isolates capable of metabolizing pesticides have received considerable attention because they offer the possibility of both environmentally friendly and in situ remediation. The effect of herbicide quizalofop-p-ethyl on bacterial community in soil was analyzed using the technique of PCR-DGGE for isolating strains biodegrading quizalofop-p-ethyl. Results indicated that the soil bacterial community structures significantly changed after adding quizalofop-p-ethyl. The bacterial diversity of soil showed an increasing-decreasing-increasing trend. The largest changes occurred in the 9th day and then became stabilized. According to the sequencing results of bands in DGGE profiles, it inferred that members of bacterial genera Pseudomonas, Massilia and Burkholderia had tolerance to quizalofop-p-ethyl, and the potential for degradation. These microbial groups could be used to isolate and screen as the indigenous microbial resources to reduce pesticide residues. Digoxigenin-labeled probes had been synthesized based on the sequencing results of bands in the DGGE profiles, and three bacterial strains capable of biodegrading quizalofop-p-ethyl were isolated from soil by colony in situ hybridization technique. The strain named LI was able to utilize quizalofop-p-ethyl as the sole source of carbon. The strain was identified as Pseudomonas sp., based on the phylogenetic analysis of 16S rRNA. The degrading ability of strain L1 in minimal medium with quizalofop-p-ethyl was investigated by HPLC. The quizalofop-p-ethyl content decreased by almost 50% after 7 days, and the biomass of strain L1 increased while the content of quizalofop-p-ethyl was decreased. This confirmed that the strain L1 had the capacity of degradation. This result provided a basis for future research on degradation mechanism and functional genes.%从自然环境中分离到的可降解农药的土著微生物,因其对环境的友好性及原位修复的可行性,受到了高度关注.

  17. Explosive turbulent magnetic reconnection.

    Science.gov (United States)

    Higashimori, K; Yokoi, N; Hoshino, M

    2013-06-21

    We report simulation results for turbulent magnetic reconnection obtained using a newly developed Reynolds-averaged magnetohydrodynamics model. We find that the initial Harris current sheet develops in three ways, depending on the strength of turbulence: laminar reconnection, turbulent reconnection, and turbulent diffusion. The turbulent reconnection explosively converts the magnetic field energy into both kinetic and thermal energy of plasmas, and generates open fast reconnection jets. This fast turbulent reconnection is achieved by the localization of turbulent diffusion. Additionally, localized structure forms through the interaction of the mean field and turbulence.

  18. Study on optimal cultivating bacteria and its biological conditions of anthracene degrading degrading kinetics to anthracene%蒽降解菌T2的最佳培养条件及其对蒽的生物降解动力学研究

    Institute of Scientific and Technical Information of China (English)

    单宝来; 张秀霞; 张剑杰; 赵朝成

    2011-01-01

    A mixed bacteria T2 which used anthracene as the sole carbon source was screened from the long-term petroleum polluted soil. When the inoculation amount of T2, pH, temperature, shaking-bed's speed and the initial concentration of anthracene were 1% , 7, 30℃, 120 r/rain and 100 rag/L, respectively, the degrading rate of T2 to anthracene could reach 56.6% through 5 days' cultivation. The optimal cultivating conditions of strain T2 were obtained through studying the cultivating conditions of T2 , the result showed that when the inoculation amount of T2, pH, temperature and the initial concentration of anthracene were 5% , 6, 35℃ and 40 mg/L, respectively, the strain grew best. In addition, the degrading kinetics experiment of strain T2 to anthracene was carried out, the result showed that the residual concentration of anthracene Y(mg/L) and time t (h) was in line with the equation Y=2. 544 e( -0.00275)t.%从长期被石油污染的土壤中筛选得到一株以蒽为惟一碳源的混合菌T2,在接种量为1%,pH为7,温度为30℃,摇床转速为120r/min,蒽的初始浓度为100mg/L的条件下培养5d后,其对蒽的降解率可以达到56.6%。通过单因素实验和正交实验对菌种T2的培养条件进行研究,得到菌种T2的最佳培养条件为:接种量为5%,pH为6,温度为35℃,蒽的初始浓度为40mg/L时,最适合菌种生长。另外,菌种T2对蒽的降解动力学实验的结果表明,蒽的残留浓度Y(mg/L)与时间t(h)符合方程y=2.544e(-0.00275)t.

  19. Laser machining of explosives

    Science.gov (United States)

    Perry, Michael D.; Stuart, Brent C.; Banks, Paul S.; Myers, Booth R.; Sefcik, Joseph A.

    2000-01-01

    The invention consists of a method for machining (cutting, drilling, sculpting) of explosives (e.g., TNT, TATB, PETN, RDX, etc.). By using pulses of a duration in the range of 5 femtoseconds to 50 picoseconds, extremely precise and rapid machining can be achieved with essentially no heat or shock affected zone. In this method, material is removed by a nonthermal mechanism. A combination of multiphoton and collisional ionization creates a critical density plasma in a time scale much shorter than electron kinetic energy is transferred to the lattice. The resulting plasma is far from thermal equilibrium. The material is in essence converted from its initial solid-state directly into a fully ionized plasma on a time scale too short for thermal equilibrium to be established with the lattice. As a result, there is negligible heat conduction beyond the region removed resulting in negligible thermal stress or shock to the material beyond a few microns from the laser machined surface. Hydrodynamic expansion of the plasma eliminates the need for any ancillary techniques to remove material and produces extremely high quality machined surfaces. There is no detonation or deflagration of the explosive in the process and the material which is removed is rendered inert.

  20. Controlled by Distant Explosions

    Science.gov (United States)

    2007-03-01

    VLT Automatically Takes Detailed Spectra of Gamma-Ray Burst Afterglows Only Minutes After Discovery A time-series of high-resolution spectra in the optical and ultraviolet has twice been obtained just a few minutes after the detection of a gamma-ray bust explosion in a distant galaxy. The international team of astronomers responsible for these observations derived new conclusive evidence about the nature of the surroundings of these powerful explosions linked to the death of massive stars. At 11:08 pm on 17 April 2006, an alarm rang in the Control Room of ESO's Very Large Telescope on Paranal, Chile. Fortunately, it did not announce any catastrophe on the mountain, nor with one of the world's largest telescopes. Instead, it signalled the doom of a massive star, 9.3 billion light-years away, whose final scream of agony - a powerful burst of gamma rays - had been recorded by the Swift satellite only two minutes earlier. The alarm was triggered by the activation of the VLT Rapid Response Mode, a novel system that allows for robotic observations without any human intervention, except for the alignment of the spectrograph slit. ESO PR Photo 17a/07 ESO PR Photo 17a/07 Triggered by an Explosion Starting less than 10 minutes after the Swift detection, a series of spectra of increasing integration times (3, 5, 10, 20, 40 and 80 minutes) were taken with the Ultraviolet and Visual Echelle Spectrograph (UVES), mounted on Kueyen, the second Unit Telescope of the VLT. "With the Rapid Response Mode, the VLT is directly controlled by a distant explosion," said ESO astronomer Paul Vreeswijk, who requested the observations and is lead-author of the paper reporting the results. "All I really had to do, once I was informed of the gamma-ray burst detection, was to phone the staff astronomers at the Paranal Observatory, Stefano Bagnulo and Stan Stefl, to check that everything was fine." The first spectrum of this time series was the quickest ever taken of a gamma-ray burst afterglow

  1. Anaerobic Metabolism and Bioremediation of Explosives-Contaminated Soil

    Science.gov (United States)

    Boopathy, Raj

    Nitroaromatic compounds pollute soil, water, and food via use of pesticides, plastics, pharmaceuticals, landfill dumping of industrial wastes, and the military use of explosives. Biotransformation of trinitrotoluene and other nitroaromatics by aerobic bacteria in the laboratory has been frequently reported, but the anaerobic bacterial metabolism of nitroaromatics has not been studied as extensively perhaps due to the difficulty in working with anaerobic cultures and the slow growth of anaerobes. Sulfate-reducing and methanogenic bacteria can metabolize nitroaromatic compounds under anaerobic conditions if appropriate electron donors and electron acceptors are present in the environment.

  2. Active Water Explosion Suppression System

    Science.gov (United States)

    2002-06-01

    efficient in eliminating the heat of detonation , thereby eliminating the heat of combustion and the associated burning of explosive by-products in the...efficiency in eliminating the heat of detonation . In any case, the net effect of the water absorbing the detonation energy of the explosive is a major

  3. Introduction to High Explosives Science

    Energy Technology Data Exchange (ETDEWEB)

    Skidmore, Cary Bradford [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Preston, Daniel N. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2016-11-17

    These are a set of slides for educational outreach to children on high explosives science. It gives an introduction to the elements involved in this science: carbon, hydrogen, nitrogen, and oxygen. Combined, these form the molecule HMX. Many pictures are also included to illustrate explosions.

  4. DDE remediation and degradation.

    Science.gov (United States)

    Thomas, John E; Ou, Li-Tse; All-Agely, Abid

    2008-01-01

    breakdown of DDE by the extracellular lignolytic enzymes produced by white rot fungi. The addition of adjutants such as sodium ion, surfactants, and cellulose increased the rate of DDT aerobic or anaerobic degradation but did little to enhance the rate of DDE disappearance under anaerobic conditions. Only in the past decade has it been demonstrated that DDE can undergo reductive dechlorination under methanogenic and sulfidogenic conditions to form the degradation product DDMU, 1-chloro-2,2'-bis-(4'-chlorophenyl)ethane. The only pure culture reported to degrade DDE under anaerobic conditions was the denitrifier Alcaligens denitrificans. The degradation of DDE by this bacterium was enhanced by glucose, whereas biphenyl fumes had no effect. Abiotic remediation by DDE volatilization was enhanced by flooding and irrigation and deepplowing inhibited the volatilization. The use of zero-valent iron and surfactants in flooded soils enhanced DDT degradation but did not significantly alter the rate of DDE removal. Other catalysts (palladized magnesium, palladium on carbon, and nickel/aluminum alloys) degraded DDT and its metabolites, including DDE. However, these systems are often biphasic or involve explosive gases or both. Safer abiotic alternatives use UV light with titanium oxide or visible light with methylene green to degrade DDT, DDD, and DDE in aqueous or mixed solvent systems. Remediation and degradation of DDE in soil and water by phytoextraction, aerobic and anaerobic microorganisms, or abiotic methods can be accomplished. However, success has been limited, and great care must be taken that the method does not transfer the contaminants to another locale (by volatilization, deep plowing, erosion, or runoff) or to another species (by ingestion of accumulating plants or contaminated water). Although the remediation of DDT-, DDD-, and DDE-contaminated soil and water is beset with myriad problems, there remain many open avenues of research.

  5. The Scaled Thermal Explosion Experiment

    Energy Technology Data Exchange (ETDEWEB)

    Wardell, J F; Maienschein, J L

    2002-07-05

    We have developed the Scaled Thermal Explosion Experiment (STEX) to provide a database of reaction violence from thermal explosion for explosives of interest. Such data are needed to develop, calibrate, and validate predictive capability for thermal explosions using simulation computer codes. A cylinder of explosive 25, 50 or 100 mm in diameter, is confined in a steel cylinder with heavy end caps, and heated under controlled conditions until reaction. Reaction violence is quantified through non-contact micropower impulse radar measurements of the cylinder wall velocity and by strain gauge data at reaction onset. Here we describe the test concept, design and diagnostic recording, and report results with HMX- and RDX-based energetic materials.

  6. A Comprehensive Review of Aliphatic Hydrocarbon Biodegradation by Bacteria.

    Science.gov (United States)

    Abbasian, Firouz; Lockington, Robin; Mallavarapu, Megharaj; Naidu, Ravi

    2015-06-01

    Hydrocarbons are relatively recalcitrant compounds and are classified as high-priority pollutants. However, these compounds are slowly degraded by a large variety of microorganisms. Bacteria are able to degrade aliphatic saturated and unsaturated hydrocarbons via both aerobic and anaerobic pathways. Branched hydrocarbons and cyclic hydrocarbons are also degraded by bacteria. The aerobic bacteria use different types of oxygenases, including monooxygenase, cytochrome-dependent oxygenase and dioxygenase, to insert one or two atoms of oxygen into their targets. Anaerobic bacteria, on the other hand, employ a variety of simple organic and inorganic molecules, including sulphate, nitrate, carbonate and metals, for hydrocarbon oxidation.

  7. Effect of steam explosion on biodegradation of lignin in wheat straw.

    Science.gov (United States)

    Zhang, Lian-Hui; Li, Dong; Wang, Li-Jun; Wang, Ti-Peng; Zhang, Lu; Chen, Xiao Dong; Mao, Zhi-Huai

    2008-11-01

    The effect of steam explosion pretreatment on biodegradation of lignin in wheat straw was studied in this paper. Through experiments and analysis, 0.8MPa operation pressure and 1:20 wheat straw to water ratio are optimum for destroying lignin and the maximum of lignin loss rate is 19.94%. After steam explosion pretreatment, the wheat straw was retted by Trametes versicolor for 40 days. Biodegradation rate of lignin was tested and the maximum of 55.40% lignin loss rate was found on day 30. During the whole process of both steam explosion pretreatment and biodegradation, 75.34% lignin was degraded, without steam explosion the biodegradation of raw material the degradation rate of lignin was 31.23% only. FT-IR spectroscopy, TGA and SEM were used for further validating the results of biodegradation.

  8. The interaction of explosively generated plasma with explosives

    Science.gov (United States)

    Tasker, Douglas G.; Whitley, Von H.; Johnson, Carl E.

    2017-01-01

    It has been shown that the temperature of explosively generated plasma (EGP) is of the order of 1 eV and plasma ejecta can be focused to achieve velocities as high as 25 km/s. Proof-of-principle tests were performed to determine if EGP could be used for explosive ordnance demolition and other applications. The goals were: to benignly disable ordnance containing relatively sensitive high performance explosives (PBX-9501); and to investigate the possibility of interrupting an ongoing detonation in a powerful high explosive (again PBX-9501) with EGP. Experiments were performed to establish the optimum sizes of plasma generators for the benign deactivation of high explosives, i.e., the destruction of the ordnance without initiating a detonation or comparable violent event. These experiments were followed by attempts to interrupt an ongoing detonation by the benign disruption of the unreacted explosive in its path. The results were encouraging. First, it was demonstrated that high explosives could be destroyed without the initiation of a detonation or high order reaction. Second, ongoing detonations were successfully interrupted with EGP. [LA-UR-15-25350

  9. Explosion risks from nanomaterials

    Science.gov (United States)

    Bouillard, Jacques; Vignes, Alexis; Dufaud, Olivier; Perrin, Laurent; Thomas, Dominique

    2009-05-01

    Emerging nanomanufactured products are being incorporated in a variety of consumer products ranging from closer body contact products (i.e. cosmetics, sunscreens, toothpastes, pharmaceuticals, clothing) to more remote body-contact products (electronics, plastics, tires, automotive and aeronautical), hence posing potential health and environmental risks. The new field of nanosafety has emerged and needs to be explored now rather than after problems becomes so ubiquitous and difficult to treat that their trend become irreversible. Such endeavour necessitates a transdisciplinary approach. A commonly forgotten and/or misunderstood risk is that of explosion/detonation of nanopowders, due to their high specific active surface areas. Such risk is emphasized and illustrated with the present development of an appropriate risk analysis. For this particular risk, a review of characterization methods and their limitations with regard to nanopowders is presented and illustrated for a few organic and metallic nanopowders.

  10. Mixing in explosions

    Energy Technology Data Exchange (ETDEWEB)

    Kuhl, A.L.

    1993-12-01

    Explosions always contain embedded turbulent mixing regions, for example: boundary layers, shear layers, wall jets, and unstable interfaces. Described here is one particular example of the latter, namely, the turbulent mixing occurring in the fireball of an HE-driven blast wave. The evolution of the turbulent mixing was studied via two-dimensional numerical simulations of the convective mixing processes on an adaptive mesh. Vorticity was generated on the fireball interface by baroclinic effects. The interface was unstable, and rapidly evolved into a turbulent mixing layer. Four phases of mixing were observed: (1) a strong blast wave phase; (2) and implosion phase; (3) a reshocking phase; and (4) an asymptotic mixing phase. The flowfield was azimuthally averaged to evaluate the mean and r.m.s. fluctuation profiles across the mixing layer. The vorticity decayed due to a cascade process. This caused the corresponding enstrophy parameter to increase linearly with time -- in agreement with homogeneous turbulence calculations of G.K. Batchelor.

  11. Direct imaging of explosives

    Energy Technology Data Exchange (ETDEWEB)

    Knapp, E.A.; Moler, R.B.; Saunders, A.W.; Trower, W.P. E-mail: trower@naxs.net

    2000-11-15

    Any technique that can detect nitrogen concentrations can screen for concealed explosives. However, such a technique would have to be insensitive to metal, both encasing and incidental. If images of the nitrogen concentrations could be captured, then, since form follows function, a robust screening technology could be developed. However these images would have to be sensitive to the surface densities at or below that of the nitrogen contained in buried anti-personnel mines or of the SEMTEX that brought down Pan Am 103, {approx}200 g. Although the ability to image in three-dimensions would somewhat reduce false positives, capturing collateral images of carbon and oxygen would virtually assure that nitrogenous non-explosive material like fertilizer, Melmac[reg] dinnerware, and salami could be eliminated. We are developing such an instrument, the Nitrogen Camera, which has met experimentally these criteria with the exception of providing oxygen images, which awaits the availability of a sufficiently energetic light source. Our Nitrogen Camera technique uses an electron accelerator to produce photonuclear reactions whose unique decays it registers. Clearly if our Nitrogen Camera is made mobile, it could be effective in detecting buried mines, either in an active battlefield situation or in the clearing of abandoned military munitions. Combat operations require that a swathe the width of an armored vehicle, 5 miles deep, be screened in an hour, which is within our camera's scanning speed. Detecting abandoned munitions is technically easier as it is free from the onerous speed requirement. We describe here our Nitrogen Camera and show its 180 pixel intensity images of elemental nitrogen in a 200 g mine simulant and in a 125 g stick of SEMTEX. We also report on our progress in creating a lorry transportable 70 MeV electron racetrack microtron, the principal enabling technology that will allow our Nitrogen Camera to be deployed in the field.

  12. Direct imaging of explosives.

    Science.gov (United States)

    Knapp, E A; Moler, R B; Saunders, A W; Trower, W P

    2000-01-01

    Any technique that can detect nitrogen concentrations can screen for concealed explosives. However, such a technique would have to be insensitive to metal, both encasing and incidental. If images of the nitrogen concentrations could be captured, then, since form follows function, a robust screening technology could be developed. However these images would have to be sensitive to the surface densities at or below that of the nitrogen contained in buried anti-personnel mines or of the SEMTEX that brought down Pan Am 103, approximately 200 g. Although the ability to image in three-dimensions would somewhat reduce false positives, capturing collateral images of carbon and oxygen would virtually assure that nitrogenous non-explosive material like fertilizer, Melmac dinnerware, and salami could be eliminated. We are developing such an instrument, the Nitrogen Camera, which has met experimentally these criteria with the exception of providing oxygen images, which awaits the availability of a sufficiently energetic light source. Our Nitrogen Camera technique uses an electron accelerator to produce photonuclear reactions whose unique decays it registers. Clearly if our Nitrogen Camera is made mobile, it could be effective in detecting buried mines, either in an active battlefield situation or in the clearing of abandoned military munitions. Combat operations require that a swathe the width of an armored vehicle, 5 miles deep, be screened in an hour, which is within our camera's scanning speed. Detecting abandoned munitions is technically easier as it is free from the onerous speed requirement. We describe here our Nitrogen Camera and show its 180 pixel intensity images of elemental nitrogen in a 200 g mine simulant and in a 125 g stick of SEMTEX. We also report on our progress in creating a lorry transportable 70 MeV electron racetrack microtron, the principal enabling technology that will allow our Nitrogen Camera to be deployed in the field.

  13. Shock desensitizing of solid explosive

    Energy Technology Data Exchange (ETDEWEB)

    Davis, William C [Los Alamos National Laboratory

    2010-01-01

    Solid explosive can be desensitized by a shock wave too weak to initiate it promptly, and desensitized explosive does not react although its chemical composition is almost unchanged. A strong second shock does not cause reaction until it overtakes the first shock. The first shock, if it is strong enough, accelerates very slowly at first, and then more rapidly as detonation approaches. These facts suggest that there are two competing reactions. One is the usual explosive goes to products with the release of energy, and the other is explosive goes to dead explosive with no chemical change and no energy release. The first reaction rate is very sensitive to the local state, and the second is only weakly so. At low pressure very little energy is released and the change to dead explosive dominates. At high pressure, quite the other way, most of the explosive goes to products. Numerous experiments in both the initiation and the full detonation regimes are discussed and compared in testing these ideas.

  14. Active explosion barrier performance against methane and coal dust explosions

    Institute of Scientific and Technical Information of China (English)

    J J L du Plessis

    2015-01-01

    Preventing the propagation of methane or coal dust explosions through the use of active explosion-suppression systems remains one of the most underutilised explosion controls in underground coal mines. As part of the effort to develop better technologies to safeguard mines, the use of active barrier systems was investigated at Kloppersbos in South Africa. The system is designed to meet the requirements of the European Standard (EN 14591-4 2007) as well as the Mine Safety Standardisation in the Ministry of Coal Industry, Coal Industrial l Standard of the Peoples Republic of China (MT 694-1997). From the tests conducted, it can be concluded that the ExploSpot System was successful in stopping flame propagation for both methane and methane and coal dust hybrid explosions when ammonium phosphate powder was used as the suppression material. The use of this barrier will provide coal mine management with an additional explosion control close to the point of ignition and may find application within longwall faces further protecting mines against the risk of an explosion propagating throughout a mine.

  15. Bacteria Provide Cleanup of Oil Spills, Wastewater

    Science.gov (United States)

    2010-01-01

    Through Small Business Innovation Research (SBIR) contracts with Marshall Space Flight Center, Micro-Bac International Inc., of Round Rock, Texas, developed a phototrophic cell for water purification in space. Inside the cell: millions of photosynthetic bacteria. Micro-Bac proceeded to commercialize the bacterial formulation it developed for the SBIR project. The formulation is now used for the remediation of wastewater systems and waste from livestock farms and food manufacturers. Strains of the SBIR-derived bacteria also feature in microbial solutions that treat environmentally damaging oil spills, such as that resulting from the catastrophic 2010 Deepwater Horizon oil rig explosion in the Gulf of Mexico.

  16. [Causation, prevention and treatment of dust explosion].

    Science.gov (United States)

    Dong, Maolong; Jia, Wenbin; Wang, Hongtao; Han, Fei; Li, Xiao-Qiang; Hu, Dahai

    2014-10-01

    With the development of industrial technology, dust explosion accidents have increased, causing serious losses of people's lives and property. With the development of economy, we should lay further emphasis on causation, prevention, and treatment of dust explosion. This article summarizes the background, mechanism, prevention, and treatment of dust explosion, which may provide some professional knowledge and reference for the treatment of dust explosion.

  17. Suppression of stratified explosive interactions

    Energy Technology Data Exchange (ETDEWEB)

    Meeks, M.K.; Shamoun, B.I.; Bonazza, R.; Corradini, M.L. [Wisconsin Univ., Madison, WI (United States). Dept. of Nuclear Engineering and Engineering Physics

    1998-01-01

    Stratified Fuel-Coolant Interaction (FCI) experiments with Refrigerant-134a and water were performed in a large-scale system. Air was uniformly injected into the coolant pool to establish a pre-existing void which could suppress the explosion. Two competing effects due to the variation of the air flow rate seem to influence the intensity of the explosion in this geometrical configuration. At low flow rates, although the injected air increases the void fraction, the concurrent agitation and mixing increases the intensity of the interaction. At higher flow rates, the increase in void fraction tends to attenuate the propagated pressure wave generated by the explosion. Experimental results show a complete suppression of the vapor explosion at high rates of air injection, corresponding to an average void fraction of larger than 30%. (author)

  18. Detonation probabilities of high explosives

    Energy Technology Data Exchange (ETDEWEB)

    Eisenhawer, S.W.; Bott, T.F.; Bement, T.R.

    1995-07-01

    The probability of a high explosive violent reaction (HEVR) following various events is an extremely important aspect of estimating accident-sequence frequency for nuclear weapons dismantlement. In this paper, we describe the development of response curves for insults to PBX 9404, a conventional high-performance explosive used in US weapons. The insults during dismantlement include drops of high explosive (HE), strikes of tools and components on HE, and abrasion of the explosive. In the case of drops, we combine available test data on HEVRs and the results of flooring certification tests to estimate the HEVR probability. For other insults, it was necessary to use expert opinion. We describe the expert solicitation process and the methods used to consolidate the responses. The HEVR probabilities obtained from both approaches are compared.

  19. Explosive Blast Neuropathology and Seizures

    Directory of Open Access Journals (Sweden)

    S. Krisztian eKovacs

    2014-04-01

    Full Text Available Traumatic brain injury (TBI due to explosive blast exposure is a leading combat casualty. It is also implicated as a key contributor to war related mental health diseases. A clinically important consequence of all types of TBI is a high risk for development of seizures and epilepsy. Seizures have been reported in patients who have suffered blast injuries in the Global War on Terror but the exact prevalence is unknown. The occurrence of seizures supports the contention that explosive blast leads to both cellular and structural brain pathology. Unfortunately, the exact mechanism by which explosions cause brain injury is unclear, which complicates development of meaningful therapies and mitigation strategies. To help improve understanding, detailed neuropathological analysis is needed. For this, histopathological techniques are extremely valuable and indispensable. In the following we will review the pathological results, including those from immunohistochemical and special staining approaches, from recent preclinical explosive blast studies.

  20. Simulation Analysis of Indoor Gas Explosion Damage

    Institute of Scientific and Technical Information of China (English)

    钱新明; 陈林顺; 冯长根

    2003-01-01

    The influence factors and process of indoor gas explosion are studied with AutoReaGas explosion simulator. The result shows that venting pressure has great influence on the indoor gas explosion damage. The higher the venting pressure is, the more serious the hazard consequence will be. The ignition location has also evident effect on the gas explosion damage. The explosion static overpressure would not cause major injury to person and serious damage to structure in the case of low venting pressure (lower than 2 kPa). The high temperature combustion after the explosion is the major factor to person injury in indoor gas explosion accidents.

  1. Furball Explosive Breakout Test

    Energy Technology Data Exchange (ETDEWEB)

    Carroll, Joshua David [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2015-08-05

    For more than 30 years the Onionskin test has been the primary way to study the surface breakout of a detonation wave. Currently the Onionskin test allows for only a small, one dimensional, slice of the explosive in question to be observed. Asymmetrical features are not observable with the Onionskin test and its one dimensional view. As a result, in 2011, preliminary designs for the Hairball and Furball were developed then tested. The Hairball used shorting pins connected to an oscilloscope to determine the arrival time at 24 discrete points. This limited number of data points, caused by the limited number of oscilloscope channels, ultimately led to the Hairball’s demise. Following this, the Furball was developed to increase the number of data points collected. Instead of shorting pins the Furball uses fiber optics imaged by a streak camera to determine the detonation wave arrival time for each point. The original design was able to capture the detonation wave’s arrival time at 205 discrete points with the ability to increase the number of data points if necessary.

  2. Disaster management following explosion.

    Science.gov (United States)

    Sharma, B R

    2008-01-01

    Explosions and bombings remain the most common deliberate cause of disasters involving large numbers of casualties, especially as instruments of terrorism. These attacks are virtually always directed against the untrained and unsuspecting civilian population. Unlike the military, civilians are poorly equipped or prepared to handle the severe emotional, logistical, and medical burdens of a sudden large casualty load, and thus are completely vulnerable to terrorist aims. To address the problem to the maximum benefit of mass disaster victims, we must develop collective forethought and a broad-based consensus on triage and these decisions must reach beyond the hospital emergency department. It needs to be realized that physicians should never be placed in a position of individually deciding to deny treatment to patients without the guidance of a policy or protocol. Emergency physicians, however, may easily find themselves in a situation in which the demand for resources clearly exceeds supply and for this reason, emergency care providers, personnel, hospital administrators, religious leaders, and medical ethics committees need to engage in bioethical decision-making.

  3. Numerical simulation of gas explosions

    Energy Technology Data Exchange (ETDEWEB)

    Van den Berg, A.C.; Van Wingerden, J.M.; Verhagen, T.L.

    1989-08-01

    Recent developments in numerical fluid dynamics and computer technology enable detailed simulation of gas explosions. Prins Maurits Laboratory TNO of the Netherlands Organization for Applied Scientific Research developed the necessary software. This software is a useful tool to develop and evaluate explosion safe installations. One of the possible applications is the design of save offshore rigs. (f.i. to prevent Piper Alpha disasters). The two-dimensional blast model is described and an example is given. 4 figs., 6 refs.

  4. Intraperitoneal explosion following gastric perforation.

    Science.gov (United States)

    Mansfield, Scott K; Borrowdale, Roderick

    2014-04-01

    The object of this study is to report a rare case of explosion during laparotomy where diathermy ignited intraperitoneal gas from a spontaneous stomach perforation. Fortunately, the patient survived but the surgeon experienced a finger burn. A literature review demonstrates other examples of intraoperative explosion where gastrointestinal gases were the fuel source. Lessons learned from these cases provide recommendations to prevent this potentially lethal event from occurring.

  5. Novel methods for detecting buried explosive devices

    Energy Technology Data Exchange (ETDEWEB)

    Kercel, S.W.; Burlage, R.S.; Patek, D.R.; Smith, C.M. [Oak Ridge National Lab., TN (United States); Hibbs, A.D.; Rayner, T.J. [Quantum Magnetics, Inc., San Diego, CA (United States)

    1997-04-01

    Oak Ridge National Laboratory (ORNL) and Quantum Magnetics, Inc. (QM) are exploring novel landmine detection technologies. Technologies considered here include bioreporter bacteria, swept acoustic resonance, nuclear quadrupole resonance (NQR), and semiotic data fusion. Bioreporter bacteria look promising for third-world humanitarian applications; they are inexpensive, and deployment does not require high-tech methods. Swept acoustic resonance may be a useful adjunct to magnetometers in humanitarian demining. For military demining, NQR is a promising method for detecting explosive substances; of 50,000 substances that have been tested, none has an NQR signature that can be mistaken for RDX or TNT. For both military and commercial demining, sensor fusion entails two daunting tasks, identifying fusible features in both present-day and emerging technologies, and devising a fusion algorithm that runs in real-time on cheap hardware. Preliminary research in these areas is encouraging. A bioreporter bacterium for TNT detection is under development. Investigation has just started in swept acoustic resonance as an approach to a cheap mine detector for humanitarian use. Real-time wavelet processing appears to be a key to extending NQR bomb detection into mine detection, including TNT-based mines. Recent discoveries in semiotics may be the breakthrough that will lead to a robust fused detection scheme.

  6. Preliminary study on nitrite degradation by nirS recombinant genetic engineering bacteria%nirS基因重组工程菌降解亚硝酸盐的初步研究

    Institute of Scientific and Technical Information of China (English)

    杨兴兴; 陈学萍; 刘冬秀; 沈洁; 陆永生

    2014-01-01

    通过基因工程手段增加厌氧氨氧化菌亚硝酸盐还原酶(nitrite reductase, nirS)的表达量,运用质粒载体pGEM-T克隆nirS基因。琼脂糖凝胶电泳检测显示, nirS基因重组工程菌在440 bp处有明显的目的条带; nirS基因重组工程菌扩大培养7~8h后即达到生长曲线稳定期,引入外加氮源后,菌体生长情况更优。通过不同菌液投加量以及处理不同初始浓度的亚硝酸钠溶液,检测nirS基因重组工程菌的性能。结果表明,当nirS基因重组工程菌投加30 mL(细菌数为2.3×107个∕mL),亚硝酸盐初始质量浓度为40 mg∕L时,亚硝酸盐去除率达到90%以上。nirS基因重组工程菌可适用于亚硝酸盐废水的处理。%In order to improve the expression quantity of nitrite reductase (nirS) in ANAMMOX bacteria through bioengineering means, nirS gene was cloned using the plasmid vector pGEM-T. A target band of 440 bp PCR products from the recombinant genetic engineering bacter was observed by agarose gel electrophoresis. The nirS recombinant genetic engineering bacteria reached stationary phase after 7-8 hours incubation, the addition of nitrogen source was advantageous to the growth of bacteria significantly. The performance of nirS recombinant genetic engineering bacteria was tested by adding different dosages of bacteria and treating sodium nitrite solu‐tion with different initial concentrations. The results showed that, when 30 mL of nirS recombinant genetic engi‐neering bacteria(2.3 × 107 cells/mL) inoculates was added to the solution with 40 mg/L of initial mass concentra‐tion of nitrite, the removal rate of nitrite reached above 90%. It was indicated that nirS recombinant genetic en‐gineering bacteria could be applied for nitrite-containing wastewater treatment in the future.

  7. Comparison of TiO2 and ZnO nanoparticles for photocatalytic degradation of methylene blue and the correlated inactivation of gram-positive and gram-negative bacteria

    Science.gov (United States)

    Barnes, Robert J.; Molina, Rodrigo; Xu, Jianbin; Dobson, Peter J.; Thompson, Ian P.

    2013-02-01

    Titanium dioxide (TiO2) and zinc oxide (ZnO) nanoparticles are important photocatalysts and as such have been extensively studied for the removal of organic compounds from contaminated air and water and for microbial disinfection. Despite much research on the effect of TiO2 and ZnO nanoparticles on different bacterial species, uncertainties remain about which bacteria are more sensitive to these compounds. Very few studies have directly compared the toxicity of ZnO to TiO2 under both light and dark conditions. In addition, authors investigating the photocatalytic inactivation of TiO2 and ZnO nanoparticles on bacteria have failed to investigate the reactive oxygen species (ROS) generation of the nanoparticles, making it difficult to correlate killing action with the generation of ROS. In this study, three types of metal nanoparticle (ZnO bacteria: two gram-positive ( S. aureus and B. subtilis) and two gram-negative ( E. coli and P. aeruginosa). Results showed that out of the three nanoparticles tested, the TiO2 nanoparticles generated more ROS than the ZnO nanoparticles, corresponding to a greater photocatalytic inactivation of three of the four species of bacteria examined. The MB decomposition results correlated well with the bacterial inactivation results with higher TiO2 nanoparticle concentrations leading to greater ROS production and increased loss of cell viability. Although producing less ROS than the TiO2 nanoparticles under ultraviolet light, the ZnO nanoparticles were toxic to two of the bacterial species even under dark conditions. In this study, no correlation between cell wall type and bacterial inactivation was observed for any of the nanoparticles tested although both gram-positive bacteria were sensitive to ROS production. P. aeruginosa cells were resistant to all types of treatment and highlight a potential limitation to the application of these nanoparticles for water treatment.

  8. Genetically engineered microorganisms for the detection of explosives' residues

    Directory of Open Access Journals (Sweden)

    Benjamin eShemer

    2015-10-01

    Full Text Available The manufacture and use of explosives throughout the past century has resulted in the extensive pollution of soils and groundwater, and the widespread interment of landmines imposes a major humanitarian risk and prevents civil development of large areas. As most current landmine detection technologies require actual presence at the surveyed areas, thus posing a significant risk to personnel, diverse research efforts are aimed at the development of remote detection solutions. One possible means proposed to fulfill this objective is the use of microbial bioreporters: genetically engineered microorganisms tailored to generate an optical signal in the presence of explosives’ vapors. The use of such sensor bacteria will allow to pinpoint the locations of explosive devices in a minefield. While no study has yet resulted in a commercially operational system, significant progress has been made in the design and construction of explosives-sensing bacterial strains. In this article we review the attempts to construct microbial bioreporters for the detection of explosives, and analyze the steps that need to be undertaken for this strategy to be applicable for landmine detection.

  9. Challenging the concept of bacteria subsisting on antibiotics.

    Science.gov (United States)

    Walsh, Fiona; Amyes, Sebastian G B; Duffy, Brion

    2013-06-01

    Antibiotic resistance concerns have been compounded by a report that soil bacteria can catabolise antibiotics, i.e. break down and use them as a sole carbon source. To date this has not been verified or reproduced, therefore in this study soil bacteria were screened to verify and reproduce this hypothesis. Survival in high concentrations of antibiotics was initially observed; however, on further analysis these bacteria either did not degrade the antibiotics or they used an intrinsic resistance mechanism (β-lactamases) to degrade the β-lactams, as demonstrated by high-performance liquid chromatography. These results did not verify or reproduce the hypothesis that bacteria subsist on antibiotics or catabolise antibiotics as previously reported. This study identified that bacteria with a catabolising phenotype did not degrade streptomycin or trimethoprim and therefore could not utilise the antibiotics as a nutrient source. Therefore, we conclude that soil bacteria do not catabolise antibiotics.

  10. Molecular Outflows: Explosive versus Protostellar

    Science.gov (United States)

    Zapata, Luis A.; Schmid-Burgk, Johannes; Rodríguez, Luis F.; Palau, Aina; Loinard, Laurent

    2017-02-01

    With the recent recognition of a second, distinctive class of molecular outflows, namely the explosive ones not directly connected to the accretion–ejection process in star formation, a juxtaposition of the morphological and kinematic properties of both classes is warranted. By applying the same method used in Zapata et al., and using 12CO(J = 2-1) archival data from the Submillimeter Array, we contrast two well-known explosive objects, Orion KL and DR21, to HH 211 and DG Tau B, two flows representative of classical low-mass protostellar outflows. At the moment, there are only two well-established cases of explosive outflows, but with the full availability of ALMA we expect that more examples will be found in the near future. The main results are the largely different spatial distributions of the explosive flows, consisting of numerous narrow straight filament-like ejections with different orientations and in almost an isotropic configuration, the redshifted with respect to the blueshifted components of the flows (maximally separated in protostellar, largely overlapping in explosive outflows), the very-well-defined Hubble flow-like increase of velocity with distance from the origin in the explosive filaments versus the mostly non-organized CO velocity field in protostellar objects, and huge inequalities in mass, momentum, and energy of the two classes, at least for the case of low-mass flows. Finally, all the molecular filaments in the explosive outflows point back to approximately a central position (i.e., the place where its “exciting source” was located), contrary to the bulk of the molecular material within the protostellar outflows.

  11. 不同盐浓度、培养基和微量元素对嗜蜡菌PWⅠ降解固体石蜡的影响研究%Study on the Effects of Different Salt Concentration, Culture Media and Trace Elements on the Degradation of Paraffin Wax by Paraffin-thirsty Bacteria PWⅠ

    Institute of Scientific and Technical Information of China (English)

    侯巨梅; 刘铜

    2014-01-01

    The degradation effects of paraffin by paraffin-thirsty bacteria PWⅠ under the concentrations of different salt concentration, culture media and trace elements were studied. The results showed that the degradation rate of paraffin by paraffin-thirsty bacteria PWⅠreached the maximum (47.31%) when salt concentration was 1%. And the degradation rate of paraffin in liquid culture medium of paraffin was 47.76%. Different trace elements had obvious effects on the degradation of paraffin. The degradation rates of paraffin when Cu2+concentration, Zn2+concentration and Fe2+concentration were 0.10, 0.07 and 0.55μmol/L respectively reached the maximum values, being 48.30%, 47.95% and 45.26% respectively. These results will be helpful for applying PWⅠin paraffin removal and control of oil well in biological technology and enhancing the oil productivity of oil well.%对嗜蜡菌PWⅠ在不同盐浓度、培养基和微量元素中降解石蜡的效果进行了研究。结果表明,嗜蜡菌PWⅠ在盐浓度为1%时对石蜡降解率达到最大,其石蜡降解率为47.31%;在石蜡液体培养基中降解率为47.76%;不同微量元素对石蜡降解有较明显的影响,Cu2+、Zn2+、Fe2+离子浓度分别在0.10、0.07和0.55μmol/L时,对石蜡降解率最高,分别为48.30%、47.95%和45.26%。上述研究结果将有助于该菌应用于油藏油井的生物清蜡防蜡技术中,并可提高油井的采油率。

  12. THE INFLUENCE OF BARRIERS ON FLAME AND EXPLOSION WAVE IN GAS EXPLOSION

    Institute of Scientific and Technical Information of China (English)

    林柏泉; 周世宁; 张仁贵

    1998-01-01

    This paper researches into the influence of barriers on flame and explosion wave in gasexplosion on the basis of experiment. The result shows that the barrier is very important to thetransmission of flame and explosion wave in gas explosion. When there are barriers, the speed oftransmission would be very fast and shock wave will appear in gas explosion, which would in-crease gas explosion power. The result of research is very important to prevent gas explosion anddecrease the power of it.

  13. Quantifying the degradation of TNT and RDX in a saline environment with and without UV-exposure.

    Science.gov (United States)

    Sisco, Edward; Najarro, Marcela; Bridge, Candice; Aranda, Roman

    2015-06-01

    Terrorist attacks in a maritime setting, such as the bombing of the USS Cole in 2000, or the detection of underwater mines, require the development of proper protocols to collect and analyse explosive material from a marine environment. In addition to proper analysis of the explosive material, protocols must also consider the exposure of the material to potentially deleterious elements, such as UV light and salinity, time spent in the environment, and time between storage and analysis. To understand how traditional explosives would be affected by such conditions, saline solutions of explosives were exposed to natural and artificial sunlight. Degradation of the explosives over time was then quantified using negative chemical ionization gas chromatography mass spectrometry (GC/NCI-MS). Two explosives, trinitrotoluene (TNT) and cyclotrimethylenetrinitramine (RDX), were exposed to different aqueous environments and light exposures with salinities ranging from freshwater to twice the salinity of ocean water. Solutions were then aged for up to 6 months to simulate different conditions the explosives may be recovered from. Salinity was found to have a negligible impact on the degradation of both RDX and TNT. RDX was stable in solutions of all salinities while TNT solutions degraded regardless of salinity. Solutions of varying salinities were also exposed to UV light, where accelerated degradation was seen for both explosives. Potential degradation products of TNT were identified using electrospray ionization mass spectrometry (ESI-MS), and correspond to proposed degradation products discussed in previously published works [1].

  14. Bacterial isolates degrading aliphatic polycarbonates.

    Science.gov (United States)

    Suyama, T; Hosoya, H; Tokiwa, Y

    1998-04-15

    Bacteria that degrade an aliphatic polycarbonate, poly(hexamethylene carbonate), were isolated from river water in Ibaraki. Prefecture, Japan, after enrichment in liquid medium containing poly(hexamethylene carbonate) suspensions as carbon source, and dilution to single cells. Four of the strains, 35L, WFF52, 61A and 61B2, degraded poly(hexamethylene carbonate) on agar plate containing suspended poly(hexamethylene carbonate). Degradation of poly(hexamethylene carbonate) was confirmed by gel permeation chromatography. Besides poly(hexamethylene carbonate), the strains were found to degrade poly(tetramethylene carbonate). The strains were characterized morphologically, physiologically, and by 16S rDNA sequence analysis. Strains 35L and WFF52 were tentatively identified as Pseudomonas sp. and Variovorax sp., respectively, while strains 61A and 61B2 constitute an unidentified branch within the beta subclass of the Proteobacteria.

  15. Explosion limits for combustible gases

    Institute of Scientific and Technical Information of China (English)

    TONG Min-ming; WU Guo-qing; HAO Ji-fei; DAI Xin-lian

    2009-01-01

    Combustible gases in coal mines are composed of methane, hydrogen, some multi-carbon alkane gases and other gases. Based on a numerical calculation, the explosion limits of combustible gases were studied, showing that these limits are related to the concentrations of different components in the mixture. With an increase of C4H10 and C6H14, the Lower ExplosionLimit (LEL) and Upper Explosion-Limit (UEL) of a combustible gas mixture will decrease clearly. For every 0.1% increase in C4H10 and C6H14, the LEL decreases by about 0.19% and the UEL by about 0.3%. The results also prove that, by increasing the amount of H2, the UEL of a combustible gas mixture will increase considerably. If the level of H2 increases by 0.1%, the UEL will increase by about 0.3%. However, H2 has only a small effect on the LEL of the combustible gas mixture. Our study provides a theoretical foundation for judging the explosion risk of an explosive gas mixture in mines.

  16. Thermodynamic States in Explosion Fields

    Energy Technology Data Exchange (ETDEWEB)

    Kuhl, A L

    2009-10-16

    Here we investigate the thermodynamic states occurring in explosion fields from the detonation of condensed explosives in air. In typical applications, the pressure of expanded detonation products gases is modeled by a Jones-Wilkins-Lee (JWL) function: P{sub JWL} = f(v,s{sub CJ}); constants in that function are fit to cylinder test data. This function provides a specification of pressure as a function of specific volume, v, along the expansion isentrope (s = constant = s{sub CJ}) starting at the Chapman-Jouguet (CJ) state. However, the JWL function is not a fundamental equation of thermodynamics, and therefore gives an incomplete specification of states. For example, explosions inherently involve shock reflections from surfaces; this changes the entropy of the products, and in such situations the JWL function provides no information on the products states. In addition, most explosives are not oxygen balanced, so if hot detonation products mix with air, they after-burn, releasing the heat of reaction via a turbulent combustion process. This raises the temperature of explosion products cloud to the adiabatic flame temperature ({approx}3,000K). Again, the JWL function provides no information on the combustion products states.

  17. Effects of Degradation Bacteria Suspension against Flue-cured Tobacco Root Exudates on Root Structure and Photosynthetic Features of Flue-cured Tobacco Seedlings%烤烟根系分泌物降解液对烤烟幼苗根系和光合特性的影响

    Institute of Scientific and Technical Information of China (English)

    李鑫; 周冀衡; 宾俊; 王丰

    2015-01-01

    Two Lysine Bacillus and Stenotrophomonas strains were previously selected from exudates of flue-cured tobacco to be able to depredate effectively nicotine, salicylic acid and other secretions. A mixture of 5ml bacterial suspension and 45 mL secretions was added into the seedling trays to test their effects on flue-cured tobacco seedling photosynthetic characteristics, chlorophyll fluorescence characteristics, chlorophyll content and root growth. The results showed that the exudates containing degrading bacteria could improve photosynthesis during the process of seedling growth, and promote the growth of root. The degradation effect of flue-cured tobacco root exudates containing both Stenotrophomonas Bacillus and Lysine bacteria was the best, followed by the degradation solution that only contained Lysine Bacillus or Stenotrophomonas strains, and that the treating solution without degrading bacteria inhibited the growth of flue-cured tobacco seedlings. In the pot experiment, both bacteria were capable of reducing the inhibition of tobacco growth by root exudates, with the best effect observed when both bacteria were used.%从烤烟根系分泌物中筛选出能够有效降解烟碱和水杨酸等主要成分的赖氨酸芽孢杆菌和寡养单胞菌两种细菌,以5 mL菌液和45 mL分泌物混合施入育苗盘中进行幼苗培养并测定和分析其对烤烟幼苗光合特性、叶绿素荧光特性、叶绿素含量和幼苗根系生长的差异。结果表明,含有降解菌的处理液可提高幼苗生长过程中的光合作用,促进根系生长,同时含寡养单胞菌和赖氨酸芽孢杆菌的处理液对烤烟根系分泌物降解效果最佳,只含有降解水杨酸的寡养单胞菌和赖氨酸芽孢杆菌的降解液处理次之,不含降解菌的处理液对烤烟幼苗生长有抑制作用。盆栽试验中,两种菌均能够降低烤烟根系分泌物对烤烟生长的抑制作用,当两种菌混合后效果最好。

  18. Explosion and explosives. Volume 32, Number 5, 1971

    Energy Technology Data Exchange (ETDEWEB)

    1976-01-01

    The following topics are discussed: CMDB propellants with high pressure exponent; the thermal decomposition of phenylnitromethane in 2-propanol; double exposed flash x-ray photographic observation on detonation of coal mining explosions; detonation of condensed multiple components about detonation characteristics of three liquid explosives; synthesis of N,N'-bis (2,4,6-trinitro-3-glycidoxyphenyl)-ethylene dinitramine; resistance characteristics of electric primer containing conductive particles; and formation of Meisenheimer's complex by adding an aqueous sodium hydroxide to the reaction product of epoxy compound with picric acid.

  19. Rhizosphere Bacteria

    Directory of Open Access Journals (Sweden)

    N.V. Feoktistova

    2016-06-01

    Full Text Available The review deals with the analysis of modern literature data on rhizosphere bacteria and their role in plant life. The structure of rhizosphere has been characterized. The role of plants as the centers of formation of microbial communities has been shown. Data on the main groups of microorganisms inhabiting the rhizosphere have been provided. The associative relationship between rhizobacteria and partner plants has been investigated. The modern concept of holobiont defined as the whole host plant organism and microorganisms associated with it has been reviewed. The role of rhizobacteria in the processes of nitrogen fixation has been discussed in detail. The mechanisms of direct stimulation of plant growth by biosynthesis of phytohormones, improvement of phosphorus and nitrogen nutrition, increase in resistance to stress, and stimulation mediated by antagonism against pathogenic microorganisms have been analyzed. The criteria for selection of rhizobacteria for practical purposes have been discussed.

  20. Degradation of ochratoxin a by Brevibacterium species.

    Science.gov (United States)

    Rodriguez, Hector; Reveron, Ines; Doria, Francesca; Costantini, Antonella; De Las Rivas, Blanca; Muňoz, Rosario; Garcia-Moruno, Emilia

    2011-10-12

    The ability to degrade ochratoxin A was studied in different bacteria with a well-known capacity to transform aromatic compounds. Strains belonging to Rhodococcus, Pseudomonas, and Brevibacterium genera were grown in liquid synthetic culture medium containing ochratoxin A. Brevibacterium spp. strains showed 100% degradation of ochratoxin A. Ochratoxin α was detected and identified by high-performance liquid chromatography-mass spectrometry (HPLC-MS) as a degradation product in the cell-free supernatants. The degradation of ochratoxin A is of public concern for food and environmental safety, because it could contribute to the development of new biological ochratoxin A detoxification systems in foodstuffs. In this study, the degradation of ochratoxin A by bacteria belonging to the food chain was demonstrated for the first time.

  1. The Quiet Explosion

    Science.gov (United States)

    2008-07-01

    A European-led team of astronomers are providing hints that a recent supernova may not be as normal as initially thought. Instead, the star that exploded is now understood to have collapsed into a black hole, producing a weak jet, typical of much more violent events, the so-called gamma-ray bursts. The object, SN 2008D, is thus probably among the weakest explosions that produce very fast moving jets. This discovery represents a crucial milestone in the understanding of the most violent phenomena observed in the Universe. Black Hole ESO PR Photo 23a/08 A Galaxy and two Supernovae These striking results, partly based on observations with ESO's Very Large Telescope, will appear tomorrow in Science Express, the online version of Science. Stars that were at birth more massive than about 8 times the mass of our Sun end their relatively short life in a cosmic, cataclysmic firework lighting up the Universe. The outcome is the formation of the densest objects that exist, neutron stars and black holes. When exploding, some of the most massive stars emit a short cry of agony, in the form of a burst of very energetic light, X- or gamma-rays. In the early afternoon (in Europe) of 9 January 2008, the NASA/STFC/ASI Swift telescope discovered serendipitously a 5-minute long burst of X-rays coming from within the spiral galaxy NGC 2770, located 90 million light-years away towards the Lynx constellation. The Swift satellite was studying a supernova that had exploded the previous year in the same galaxy, but the burst of X-rays came from another location, and was soon shown to arise from a different supernova, named SN 2008D. Researchers at the Italian National Institute for Astrophysics (INAF), the Max-Planck Institute for Astrophysics (MPA), ESO, and at various other institutions have observed the supernova at great length. The team is led by Paolo Mazzali of INAF's Padova Observatory and MPA. "What made this event very interesting," says Mazzali, "is that the X-ray signal was very

  2. 纤维素降解菌株的筛选及其产酶条件优化%Studies on Screening of Methane Fermentation Cellulose degrading Bacteria and its Optimization of Culture Conditions

    Institute of Scientific and Technical Information of China (English)

    高星爱; 黄枭; 张永锋; 赵新颖; 程孟秋; 刘鹏; 刘思言

    2012-01-01

    为了寻求快速有效降解沼气发酵有机质中的高分子化合物,本实验从腐殖质土壤中筛选到一株高效降解纤维素菌株,在以羧甲基纤维素钠为唯一碳源的液体培养基中培养,所产生的纤维素酶对玉米芯和滤纸均表现出较强降解能力.其次做了对菌株培养条件优化的实验,结果表明,菌株的最佳降解纤维素条件为反应温度30℃、发酵液接种量为1%、0.75%羧甲基纤维素钠为碳源、1.5%胰蛋白胨为氮源,优化菌株培养条件后,纤维素酶活力增加了2.8倍.%In order to be effective, rapid degradation of organic polymer compound biogas fermentation, from soil degradation to a plant screening high efficiency degradation cellulose strain. In sodium carboxyl methyl cellulose as the only carbon source of liquid medium training strains, the cellulose enzyme produced for several and filter paper are show have better degradation ability. Next to the optimization of the strains of the culture condition experiment results show that the best cellulolytic strains of the conditions for the reaction temperature 30°C, fermented liquid 1% inoculated quantity, carbon source sodium carboxyl methyl cellulose 0.75%, had 1.5% nitrogen pancreatic specially designed, and so on. Optimization strains after the culture condition, cellulose enzyme activity has increased 2.8times.

  3. Instrument safety in explosive atmospheres.

    Science.gov (United States)

    Bossert, J A

    1975-01-01

    The current "Energy Crisis" has dramatically increased our potential need for coal, the worlds most abundant fossil fuel. This will probably lead to a greater use of automation and instrumentation in the coal mining industry. The presence of methane in coal mines and in the coal itself plus the presence of coal dust, both of which can form an explosive atmosphere in air, means that the possibility of a gas or coal dust ignition must be considered when designing, purchasing and installing new equipment in this industry. In addition, many metallurgical processes involve the use of potentially explosive substances against which similar safety precautions must be taken. This paper outlines the various methods of protection currently in use and proposed for electrical instruments in explosive atmospheres, with particular emphasis on the work of the International Electrotechnical Commission.

  4. Optimal dynamic detection of explosives

    Energy Technology Data Exchange (ETDEWEB)

    Moore, David Steven [Los Alamos National Laboratory; Mcgrane, Shawn D [Los Alamos National Laboratory; Greenfield, Margo T [Los Alamos National Laboratory; Scharff, R J [Los Alamos National Laboratory; Rabitz, Herschel A [PRINCETON UNIV; Roslund, J [PRINCETON UNIV

    2009-01-01

    The detection of explosives is a notoriously difficult problem, especially at stand-off distances, due to their (generally) low vapor pressure, environmental and matrix interferences, and packaging. We are exploring optimal dynamic detection to exploit the best capabilities of recent advances in laser technology and recent discoveries in optimal shaping of laser pulses for control of molecular processes to significantly enhance the standoff detection of explosives. The core of the ODD-Ex technique is the introduction of optimally shaped laser pulses to simultaneously enhance sensitivity of explosives signatures while reducing the influence of noise and the signals from background interferents in the field (increase selectivity). These goals are being addressed by operating in an optimal nonlinear fashion, typically with a single shaped laser pulse inherently containing within it coherently locked control and probe sub-pulses. With sufficient bandwidth, the technique is capable of intrinsically providing orthogonal broad spectral information for data fusion, all from a single optimal pulse.

  5. Coulomb explosion of "hot spot"

    CERN Document Server

    Oreshkin, V I; Chaikovsky, S A; Artyomov, A P

    2016-01-01

    The study presented in this paper has shown that the generation of hard x rays and high-energy ions, which are detected in pinch implosion experiments, may be associated with the Coulomb explosion of the hot spot that is formed due to the outflow of the material from the pinch cross point. During the process of material outflow, the temperature of the hot spot plasma increases, and conditions arise for the plasma electrons to become continuously accelerated. The runaway of electrons from the hot spot region results in the buildup of positive space charge in this region followed by a Coulomb explosion. The conditions for the hot spot plasma electrons to become continuously accelerated have been revealed and estimates have been obtained for the kinetic energy of the ions generated by the Coulomb explosion.

  6. Evidence for Nearby Supernova Explosions

    CERN Document Server

    Benítez, N; Canelles, M; Benitez, Narciso; Maiz-Apellaniz, Jesus; Canelles, Matilde

    2002-01-01

    Supernova explosions are one of the most energetic--and potentially lethal--phenomena in the Universe. Scientists have speculated for decades about the possible consequences for life on Earth of a nearby supernova, but plausible candidates for such an event were lacking. Here we show that the Scorpius-Centaurus OB association, a group of young stars currently located at~130 parsecs from the Sun, has generated 20 SN explosions during the last 11 Myr, some of them probably as close as 40 pc to our planet. We find that the deposition on Earth of 60Fe atoms produced by these explosions can explain the recent measurements of an excess of this isotope in deep ocean crust samples. We propose that ~2 Myr ago, one of the SNe exploded close enough to Earth to seriously damage the ozone layer, provoking or contributing to the Pliocene-Pleistocene boundary marine extinction.

  7. 甲胺磷生物降解酶对韭菜中农残生物修复效果研究1)%Bioremediation from Enzyme of Methamidophos Pesticide Degrading Bacteria to Chives

    Institute of Scientific and Technical Information of China (English)

    张娜; 郭庆启; 刘晓飞; 黄文秀; 宋琨; 王双; 李爽

    2013-01-01

    The research uses a Staphylococcus Rosehbach XY‐C separated in the alkaline cold black soil in Daqing .Liquid culture is used to make Staphylococcus Rosehbach XY‐C produce methamidophos dgrada‐tion enzyme .Degradation technological parameters of the coarse enzyme to methamidophos pesticide resi‐dues are determined according to single factor test .The technological parameters use degradation ratio of methamidophos as evaluation indicator .Based on the experimental data ,the optimum degradation condi‐tions of coarse enzyme to the biodegradation of methamidophos in chives are obtained .The optimum con‐ditions are :optimal temperature is 45℃ ,optimal enzyme dosage is 20mL ,spray three times respective and optimal reaction time is 20min .Degradation ratio of coarse enzyme to methamidophos pesticide resi‐dues was 67 .17 ± 1 .17% based on the optimum degradation conditions .%  利用大庆碱性寒地黑土分离得到的一株葡萄球菌XY‐C ,采用含甲胺磷的液态培养基对该菌株代谢产酶。通过单因素确定该酶对韭菜中甲胺磷农药残留的降解工艺参数,以甲胺磷降解率作为评价指标。获得了粗酶液对韭菜中甲胺磷农药降解的最佳降解条件为:降解温度45℃,酶液添加量20mL ,分别喷洒3次,于45℃降解反应20min ,采用最优降解条件,粗酶液对韭菜中甲胺磷农药的实际降解率达到67.17±1.17%。

  8. Explosively Joining Dissimilar Metal Tubes.

    Science.gov (United States)

    1979-11-01

    both steel, photograph (7), and the Ni-Cu specimen, photograph (8) , showed considerable pitting corrosion in the aluminum . 4. The paint was then...for 6061 -T6 aluminum and are: collision angle 5 - 200, collision velocity 270 - 350 m/sec, with an impact pressure of at least 27 Kbar (391 Kpsi...Welded Aluminum Alloy 1 .. 5 rn-i (P0 -I Op. 2si 11 6W TABLE I Explosive2 Cladder Metal Base Metal Explosive Loading (gins/in2 6061 -T6 Al 304 SS TSE- 1004

  9. Intravesical explosion during transurethral electrosurgery.

    Science.gov (United States)

    Georgios, Kallinikas; Evangelos, Boulinakis; Helai, Habib; Ioannis, Gerzelis

    2015-05-01

    Intravesical explosion is a very rare complication of transurethral resection of prostate and transurethral resection of bladder tumour operations. In vitro studies have shown that the gases produced during the procedure could result in a blast once they are mixed with air from the atmosphere. A 79-year-old male experienced an explosion in his bladder while undergoing a transurethral resection of bladder tumour. The case is presented as well as the way that it was treated as an emergency. Precautions of such events are finally suggested.

  10. 46 CFR 188.10-25 - Explosive.

    Science.gov (United States)

    2010-10-01

    ... mixture, the primary purpose of which is to function by explosion; i.e., with substantially instantaneous release of gas and heat. Explosives are discussed in more detail in 49 CFR parts 171-179....

  11. New Source Model for Chemical Explosions

    Energy Technology Data Exchange (ETDEWEB)

    Yang, Xiaoning [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2017-03-03

    With sophisticated inversion scheme, we recover characteristics of SPE explosions such as corner frequency fc and moment M0, which are used to develop a new source model for chemical explosions.

  12. Biodegradation of explosives. (Latest citations from the NTIS bibliographic database). Published Search

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-08-01

    The bibliography contains citations concerning the biodegradation of explosives or propellants. Mechanisms and pathways of degradation in soil or water are discussed, as well as regulations governing disposal. Bioremediation of other hazardous materials is discussed in a separate bibliography. (Contains 50-250 citations and includes a subject term index and title list.) (Copyright NERAC, Inc. 1995)

  13. Statistical estimation of loads from gas explosions

    OpenAIRE

    Høiset, Stian

    1998-01-01

    In the design of structures in the offshore and process industries, the possibility of a gas explosion must always be considered. This is usually incorporated by performing explosion simulations. However, estimations based on such calculations introduce uncertainties in the design process. The main uncertainties in explosion simulations are the assumption of the gas cloud,the location of the ignition point and the properties of the explosion simulator itself. In this thesis, we try to investi...

  14. The behavior limestone under explosive load

    Science.gov (United States)

    Orlov, M. Yu; Orlova, Yu N.; Bogomolov, G. N.

    2016-11-01

    Limestone behavior under explosive loading was investigated. The behavior of the limestone by the action of the three types of explosives, including granular, ammonite and emulsion explosives was studied in detail. The shape and diameter of the explosion craters were obtained. The observed fragments after the blast have been classified as large, medium and small fragments. Three full-scale experiments were carried out. The research results can be used as a qualitative test for the approbation of numerical methods.

  15. Gas Explosions Mitigation by Ducted Venting

    OpenAIRE

    2007-01-01

    The mitigation of effects of gas and dust explosions within industrial equipment is effective if venting the combustion products to safe location. The presence of relief duct is however likely to increase the severity of the explosion with respect to equipment vented to open atmosphere, due to secondary explosions occurring in the initial sections of duct, frictional drag and inertia of the gas column, acoustic and Helmholtz oscillations. The weights of these phenomena on explosion e...

  16. 75 FR 70291 - Commerce in Explosives; List of Explosive Materials (2010R-27T)

    Science.gov (United States)

    2010-11-17

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF JUSTICE Bureau of Alcohol, Tobacco, Firearms and Explosives Commerce in Explosives; List of Explosive Materials (2010R-27T) AGENCY: Bureau of Alcohol, Tobacco, Firearms and Explosives (ATF), Department of...

  17. 77 FR 58410 - Commerce in Explosives; List of Explosive Materials (2012R-10T)

    Science.gov (United States)

    2012-09-20

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF JUSTICE Bureau of Alcohol, Tobacco, Firearms, and Explosives Commerce in Explosives; List of Explosive Materials (2012R-10T) AGENCY: Bureau of Alcohol, Tobacco, Firearms, and Explosives (ATF), Department of...

  18. 76 FR 64974 - Commerce in Explosives; List of Explosive Materials (2011R-18T)

    Science.gov (United States)

    2011-10-19

    ... From the Federal Register Online via the Government Publishing Office ] DEPARTMENT OF JUSTICE Bureau of Alcohol, Tobacco, Firearms and Explosives Commerce in Explosives; List of Explosive Materials (2011R-18T) AGENCY: Bureau of Alcohol, Tobacco, Firearms and Explosives (ATF), Department of...

  19. Lead-free primary explosives

    Science.gov (United States)

    Huynh, My Hang V.

    2010-06-22

    Lead-free primary explosives of the formula (cat).sub.Y[M.sup.II(T).sub.X(H.sub.2O).sub.6-X].sub.Z, where T is 5-nitrotetrazolate, and syntheses thereof are described. Substantially stoichiometric equivalents of the reactants lead to high yields of pure compositions thereby avoiding dangerous purification steps.

  20. Turbulent Combustion in SDF Explosions

    Energy Technology Data Exchange (ETDEWEB)

    Kuhl, A L; Bell, J B; Beckner, V E

    2009-11-12

    A heterogeneous continuum model is proposed to describe the dispersion and combustion of an aluminum particle cloud in an explosion. It combines the gas-dynamic conservation laws for the gas phase with a continuum model for the dispersed phase, as formulated by Nigmatulin. Inter-phase mass, momentum and energy exchange are prescribed by phenomenological models. It incorporates a combustion model based on the mass conservation laws for fuel, air and products; source/sink terms are treated in the fast-chemistry limit appropriate for such gasdynamic fields, along with a model for mass transfer from the particle phase to the gas. The model takes into account both the afterburning of the detonation products of the C-4 booster with air, and the combustion of the Al particles with air. The model equations were integrated by high-order Godunov schemes for both the gas and particle phases. Numerical simulations of the explosion fields from 1.5-g Shock-Dispersed-Fuel (SDF) charge in a 6.6 liter calorimeter were used to validate the combustion model. Then the model was applied to 10-kg Al-SDF explosions in a an unconfined height-of-burst explosion. Computed pressure histories are compared with measured waveforms. Differences are caused by physical-chemical kinetic effects of particle combustion which induce ignition delays in the initial reactive blast wave and quenching of reactions at late times. Current simulations give initial insights into such modeling issues.

  1. Optical Pressure Measurements of Explosions

    Science.gov (United States)

    2013-09-01

    Explosive Shocks in Air, 2nd ed.; Springer-Verlag: Berlin , Germany, 1985. 7. Anderson, J. D. Hypersonic and High Temperature Gas Dynamics, 2nd Ed...PDF) RDRL CIO LA T LANDFRIED RDRL WML M ZOLTOSKI RDRL WML A F DE LUCIA W OBERLE RDRL WML B J GOTTFRIED J CIEZAK

  2. Explosive micro-bubble actuator

    NARCIS (Netherlands)

    Broek, van den D.M.; Elwenspoek, M.

    2008-01-01

    Explosive evaporation occurs when a liquid is exposed to extremely high heat-fluxes. Within a few microseconds a bubble in the form vapour film is generated, followed by rapid growth due to the pressure impulse and finally the bubbles collapse. This effect, which already has proven its use in curren

  3. Explosive micro-bubble actuator

    NARCIS (Netherlands)

    Broek, van den D.M.; Elwenspoek, M.C.

    2007-01-01

    Explosive evaporation occurs when a thin layer of liquid reaches a very high temperature in a very short time. At these temperatures homogeneous nucleation takes place. The nucleated bubbles almost instantly coalesce forming a vapour film followed by rapid growth due to the pressure impulse and fina

  4. Chryseobacterium indologenes, novel mannanase-producing bacteria

    Directory of Open Access Journals (Sweden)

    Surachai Rattanasuk

    2009-10-01

    Full Text Available Mannanase is a mannan degrading enzyme which is produced by microorganisms, including bacteria. This enzyme can be used in many industrial processes as well as for improving the quality of animal feeds. The aim of the present study was toscreen and characterize the mannanase-producing bacteria. Two genera of bacteria were isolated from Thai soil samples,fermented coconut, and fertilizer. Screening was carried out on agar plates containing mannan stained with iodine solution.The bacteria were identified by partial 16S rRNA gene sequence, biochemical test and morphology, respectively. The mannanase activity was determined by zymogram and DNS method. Two strains of bacteria with mannanase activity were identified as Bacillus and Chryseobacterium. This is the first report of mannanase-producing Chryseobacterium.

  5. Scientific Support for NQR Explosive Detection Development

    Science.gov (United States)

    2006-07-01

    Final 3. DATES COVERED (From - To) 8 March 2004 - 7 March 2006 4. TITLE AND SUBTITLE Scientific Support for NQR Explosive Detection Development...Laboratory (NRL) to improve explosive detection using nuclear quadrupole resonance ( NQR ) is summarized. The work includes studies of the effects...superconducting coils for explosive detection. Additional studies involving slowly rotating NQR measurements were also pursued. 15. SUBJECT TERMS Nuclear

  6. 30 CFR 77.1301 - Explosives; magazines.

    Science.gov (United States)

    2010-07-01

    ... 30 Mineral Resources 1 2010-07-01 2010-07-01 false Explosives; magazines. 77.1301 Section 77.1301... and Blasting § 77.1301 Explosives; magazines. (a) Detonators and explosives other than blasting agents shall be stored in magazines. (b) Detonators shall not be stored in the same magazine with...

  7. Portable SERS Instrument for Explosives Monitoring

    Science.gov (United States)

    2008-01-01

    groundwater monitoring from a cone penetrometer (CPT) platform (5) Demonstrate improved capability for discriminating explosives versus colorimetry ...interference, and better discrimination of individual explosives compared to colorimetry • Applicability to virtually any environmental water...chemicals such as nitroaromatics or nitramines. While this makes colorimetry more generally applicable at explosive sites, it also limits the ability to

  8. 14 CFR 420.63 - Explosive siting.

    Science.gov (United States)

    2010-01-01

    ... Aeronautics and Space COMMERCIAL SPACE TRANSPORTATION, FEDERAL AVIATION ADMINISTRATION, DEPARTMENT OF... site plan shall include: (1) A scaled map that shows the location of all proposed explosive hazard... explosive hazard facility and all other explosive hazard facilities and each public area, including...

  9. Explosion Power and Pressure Desensitization Resisting Property of Emulsion Explosives Sensitized by MgH2

    Science.gov (United States)

    Cheng, Yangfan; Ma, Honghao; Liu, Rong; Shen, Zhaowu

    2014-07-01

    Due to low detonation power and pressure desensitization problems that traditional emulsion explosives encounter in utilization, a hydrogen-based emulsion explosives was devised. This type of emulsion explosives is sensitized by hydrogen-containing material MgH2, and MgH2 plays a double role as a sensitizer and an energetic material in emulsion explosives. Underwater explosion experiments and shock wave desensitization experiments show that an MgH2 emulsion explosives has excellent detonation characteristics and is resistant to pressure desensitization. The pressure desensitization-resistant mechanism of MgH2 emulsion explosives was investigated using scanning electron microscopy.

  10. 可降解蒽细菌的分离与生长特性研究%Research on the Isolation and Growth Characteristics of Anthracene-degraded Bacteria

    Institute of Scientific and Technical Information of China (English)

    杜军; 张旭; 黄琦

    2011-01-01

    [目的]为蒽等多环芳烃(PAHs)污染的生物修复提供理论依据.[方法]采用富集培养的方法从污水处理厂的活性污泥中筛选得到蒽降解菌株E12,测定该菌株的生长曲线及其对蒽的降解曲线,并研究不同蒽浓度、初始pH值等对其降解蒽效率的影响.[结果]经初步鉴定,菌株E12属于气微菌属,该菌株可在以蒽为唯一碳源的培养基中生长.蒽初始浓度小于900 mg/L时,菌体浓度随蒽浓度的增加而增加,当蒽浓度超过900 mg/L后,菌体浓度显著下降;菌株在弱酸性和弱碱性环境中均能生长,但最适生长pH值为6.5;菌悬液接入量对菌体生长也有明显影响,最适接种量为2.0%.[结论] E12菌株降解蒽的最佳条件为:蒽浓度900 mg/L,pH值6.5,此条件下培养148 h后蒽的降解率可达70.5%.%[ Objective] The research aimed to supply theoretical foundation for bio-recovery of polycyclic aromatic hydrocarbon (PAHs) pollution, such as anthracene pollution. [ Method] The anthracene-degraded strain E12 was screened out from active sludge of sewage processing factory through enrichment culture. The growth curve of this strain and its degrading curve on anthracene were determined and the influence of factors including different anthracene concn. and initial pH values on the its degraded efficiency was researched. [ Result] The primary identification indicated that the strain E12 belong to Aeromonas and could grow in the medium with anthracene as sole carbon source. When the initial concn. of anthracene was lower than 900 mg/L, the strain concn. was increased along with the increase of anthracene concn. When the anthracene concn. exceeded 900 mg/L, the strain concn. was decreased significantly. The strain could grow in both weak acid and weak base environments and the optimum pH value for its growth was 6.5. The innoculation amount of bacterial suspension also showed obvious influence on its growth and the optimum innoculation amount was 2.0

  11. Suppression of Chemotactic Explosion by Mixing

    Science.gov (United States)

    Kiselev, Alexander; Xu, Xiaoqian

    2016-11-01

    Chemotaxis plays a crucial role in a variety of processes in biology and ecology. In many instances, processes involving chemical attraction take place in fluids. One of the most studied PDE models of chemotaxis is given by the Keller-Segel equation, which describes a population density of bacteria or mold which is attracted chemically to substance they secrete. Solutions of the Keller-Segel equation can exhibit dramatic collapsing behavior, where density concentrates positive mass in a measure zero region. A natural question is whether the presence of fluid flow can affect singularity formation by mixing the bacteria thus making concentration harder to achieve. In this paper, we consider the parabolic-elliptic Keller-Segel equation in two and three dimensions with an additional advection term modeling ambient fluid flow. We prove that for any initial data, there exist incompressible fluid flows such that the solution to the equation stays globally regular. On the other hand, it is well known that when the fluid flow is absent, there exists initial data leading to finite time blow up. Thus the presence of fluid flow can prevent the singularity formation. We discuss two classes of flows that have the explosion arresting property. Both classes are known as very efficient mixers. The first class are the relaxation enhancing (RE) flows of (Ann Math:643-674, 2008). These flows are stationary. The second class of flows are the Yao-Zlatos near-optimal mixing flows (Mixing and un-mixing by incompressible flows. arXiv:1407.4163, 2014), which are time dependent. The proof is based on the nonlinear version of the relaxation enhancement construction of (Ann Math:643-674, 2008), and on some variations of the global regularity estimate for the Keller-Segel model.

  12. Numerical computation algorithm of explosion equations and thermodynamics parameters of mine explosives

    Institute of Scientific and Technical Information of China (English)

    李守巨; 刘迎曦; 何翔; 周圆π

    2001-01-01

    A new numerical algorithm is presented to simulate the explosion reaction process of mine explosives based on the equation of state, the equation of mass conservation and thermodynamics balance equation of explosion products. With the affection of reversible reaction of explosion products to explosion reaction equations and thermodynamics parameters considered, the computer program has been developed. The computation values show that computer simulation results are identical with the testinq ones.

  13. Numerical computation algorithm of explosion equations and thermodynamics parameters of mine explosives

    Institute of Scientific and Technical Information of China (English)

    LI Shou-ju; LIU Ying-xi; HE Xiang; ZHOU Y uan-pai

    2001-01-01

    A new numerical algorithm is presented to simulate the explosion reacti on process of mine explosives based on the equation of state, the equation of ma ss conservation and thermodynamics balance equation of explosion products. With the affection of reversible reaction of explosion products to explosion reaction equations and thermodynamics parameters considered, the computer program has be en developed. The computation values show that computer simulation results are i dentical with the testing ones.

  14. 外源微生物对土壤中烟嘧磺隆的降解作用研究%Bioremediation of exogenous degrading bacteria to the nicosulfuron-contaminated soil

    Institute of Scientific and Technical Information of China (English)

    马晓亮; 于佩博; 高鹤南; 张浩

    2011-01-01

    为了探索外源微生物N80(Serratia marcecens)对烟嘧磺隆污染土壤生物修复的可行性,在实验室条件下,分析了温度、土壤pH值、接菌量、农药初始质量比等因素对N80降解烟嘧磺隆效果的影响.同时以小白菜、甜菜、菠菜为供试作物,采用室内盆栽试验法处理污染土壤,液相色谱仪(UVD)测定土壤中烟嘧磺降残留量.结果表明:1)向污染土壤中添加外源微生物菌株N80可以促进土壤中烟嘧磺隆的降解,第30d时,最高降解率可达79.7%;2)N80降解污染土壤中烟嘧磺隆的最适宜条件为25℃,pH=7.0,接种量108 cfu/g,初始质量比10mg/kg.研究表明,向污染土壤中接种一定量的外源微生物菌株N80可以有效降低土壤中烟嘧磺隆的残留量,减轻烟嘧磺隆对敏感作物的药害,达到了预期的生物修复效果.%The present essay is to give a general introduction to our experimental study of the bioremediation for the nicosulfuron contaminated soil by using exogenous microbial N80 (serratia marcecens, isolated in our lab). First of all, we have examined the bioremediate function of N80 strain-a kind of serratia marcecens in the nicosulfuron contaminated soil under laboratory conditions. Analyzing it carefully let us make clear that of all the essential factors of degrading nicosulfuron by N80, the temperature, pH of the soil, the inoculation and initial nicosulfuron concentration are the key ones. It has also become possible to measure the soil residues of the nicosulfuron because of using the liquid chromatography ( UVD). The results of our measurements indicate that N80 grows with nicosulfuron as the unique nitrogen source at the optimal temperature range of 25 ℃ with its pH value being 7.0 in the soil. As a result of the nicosulfuron degradation by N80, the enzyme activity tends to be reduced by the improper temperature and pH value. However, adding N80 can speed up the nicosulfuron degradation in the soil at a rate of 10 mg

  15. Isolation and characterization of functional bacteria for promotion of linocellulose degradation in compost%强化堆肥中木质纤维素降解的功能菌株筛选鉴定

    Institute of Scientific and Technical Information of China (English)

    徐杰; 许修宏; 刘月

    2014-01-01

    Three bacterial strains had been screened from soil, straw and cattle manure by various screening criterions which had capacity and potential of ligocellulose degradation, temperature-rising and deodorization. According to the morphologi-cal, cultural feature, physiological and biochemical features and 16S rDNA sequencing, the three bacterial strains were identi-fied as Bacillus sp. . The experimental results of compost functional verification showed that which addition with these three bacterial strains, the degradation rates of cellulose, hemicelloluse and lignin in compost were 31. 31%, 19. 57% and 14. 33%higher than those of control, respectively, and the germination rate was 93. 3% which was higher than control by 36. 6%. So these three bacterial strains had potential of promoting ligocellulose degradation and improving maturity in cattle manure com-post. It was predicted that Bacillus sp. X9, Bacillus sp. L1 and Bacillus sp. L8 had promising prospects of being applied in improving the resource utilization of cattle manure in larger scale or utilized in other livestock and poultry manure compost.%采用多种筛选相结合的方法,从土壤、秸秆、牛粪等不同来源的样品中分离得到3株具有木质纤维素降解能力的细菌,其同时具有使堆肥快速升温和有效除臭潜力。经菌体形态观察、生理生化分析及16S rDNA鉴定,此3株细菌均属于Bacillus sp.。堆肥功能验证试验结果表明,添加此3株功能菌可使堆肥中纤维素、半纤维素和木质素的降解率分别比对照提高31.31%、19.57%和14.33%;堆肥结束时的发芽率达到93.3%,高出对照36.6%。此3株功能细菌具有很好的促进堆肥中木质纤维素降解和提高堆肥腐熟度的能力,可以考虑将其应用于较大规模的牛粪或其他畜禽粪便的堆肥处理。

  16. Gas explosions - an elementary account; Eksplosiv fare

    Energy Technology Data Exchange (ETDEWEB)

    Seehusen, Joachim

    2002-07-01

    Although in a typical gas explosion the flame front propagates at sub-sonic speed, it still moves fast. Safety people often believe they can run away from a gas explosion. While gas explosions are well understood in the major companies, this is not true in many small ones, and people often do not realise how small the difference may be between a small puff and a dangerous explosion. Of special interest in a ''hydrogen society'' is the fact that hydrogen is dangerous and must be handled with care. The article discusses in an elementary way some of the basic concepts from the physics of gas explosions.

  17. Biological Potential of Chitinolytic Marine Bacteria

    DEFF Research Database (Denmark)

    Paulsen, Sara Skøtt; Andersen, Birgitte; Gram, Lone;

    2016-01-01

    Chitinolytic microorganisms secrete a range of chitin modifying enzymes, which can be exploited for production of chitin derived products or as fungal or pest control agents. Here, we explored the potential of 11 marine bacteria (Pseudoalteromonadaceae, Vibrionaceae) for chitin degradation using ...... analyses, we cloned and expressed two ChiA-like chitinases from the two most potent candidates to exemplify the industrial potential....

  18. Damage Effects of Shelled Explosive Explosion in Concrete

    Directory of Open Access Journals (Sweden)

    Liu Yan

    2010-10-01

    Full Text Available The damage of concrete subjected to explosion loading is an important issue in defense engineering. The damage degree of concrete is related to many factors, such as the type of explosive charge, the depth of burial and the parameters of concrete. In this paper, three factors are considered for experiments of shelled explosives in concrete targets, which are the filling coefficient, length-to-diameter ratio and the depth of burial. The filling coefficient is from 0.1 to 1 by changing thickness of shell, and length-to-diameter ratio is from 2.5 to 10. The unconfined compressive strength of concrete target for test is 35MPa. The experimental results showed that the sizes of craters of concretes are varied as the filling coefficient, length-to-diameter ratio and the depth of burial. The optimal values of filling coefficient, length-to-diameter ratio and the depth of burial of shelled charges were obtained to get largest damage regions of concrete targets. This work provides a base for evaluating the damage of concrete and designing the penetrating warhead.Defence Science Journal, 2010, 60(6, pp.672-677, DOI:http://dx.doi.org/10.14429/dsj.60.434

  19. Screening and characterization analysis of oil degrading bacteria producing biosurfactant%产生物表面活性剂石油降解菌筛选及特性研究

    Institute of Scientific and Technical Information of China (English)

    李琦; 黄廷林; 宋进喜; 陈大年

    2012-01-01

    目的 获得产高效生物表面活性剂的菌株,并判定表面活性剂的结构及探索其特性.方法 通过从富油土壤中采用富集培养、血平板分离、排油活性等方法筛选高产表面活性剂菌株并鉴定;采用萃取和柱层析法提纯后HPLC-MS法分析产物结构并分析其理化性质.结果 筛选出产生物表面活性剂高效菌BD-5,经鉴定为铜绿假单胞菌;所产生物表面活性剂为8种鼠李糖脂同系物的混合物;鼠李糖脂溶液对液体石蜡、柴油和甲苯都具有较强的乳化能力;当鼠李糖脂浓度高于临界胶束浓度(CMC)时,长链烷烃和多环芳烃在水相中的表观溶解度随鼠李糖脂浓度的增大而增大,摩尔增溶比(MSR)的变化关系为正十六烷>萘>菲>芘.结论 BD-5菌株产生的生物表面活性剂活性突出,有良好的应用前景.%Aim To get one strain of bacterium producing high-efficient biosurfactant and decern the structure and characteristics of biosurfactant. Methods The high bacteria surfactant of BD-5 in oily soil is determined through twice selection from some processes of enrichment culture, blood plate separation and surface tension test. Simultaneously , on the basis of purification by extraction and column chromatography, the structure as well as physical and chemical properties of biosurfactant must be determined using HPLC-MS. Results The selected high bacteria surfactant of BD-5 from oily soil is termed as pseudomonas aeruginosa; on the basis of HPLC-MS test, the high bacteria surfactant of BD-5 is examined as the mixture of 8 kinds of rhamnolipid homologues; it is found that the rhamno-lipid solution has strong emulsion effect on liquid paraffin, diesel and toluene. The variation of the molar solubiliza-tion ratio is thexadecane > naphthalene > phenanthrene > pyrene. Conclusion The above results showed that the BD-5 strain has a greater potential for Soil bioremediation.

  20. Toward more selective bacteria; Vers des bacteries plus selectives

    Energy Technology Data Exchange (ETDEWEB)

    Larane, A.

    1997-05-01

    Broadly used in purification plants of residual waters, the bacteria degradation is used now in water treatment plants. New techniques, as fixed cultures or filtration membranes increase, the reactors yield; in waiting for the genetically modified bacteria, able to eliminate a precise pollutant. (N.C.)

  1. Strains of the soil fungus Mortierella show different degradation potentials for the phenylurea herbicide diuron

    DEFF Research Database (Denmark)

    Ellegaard-Jensen, Lea; Aamand, Jens; Kragelund, Birthe Brandt;

    2013-01-01

    Microbial pesticide degradation studies have until now mainly focused on bacteria, although fungi have also been shown to degrade pesticides. In this study we clarify the background for the ability of the common soil fungus Mortierella to degrade the phenylurea herbicide diuron. Diuron degradation...

  2. RANCHERO explosive pulsed power experiments

    CERN Document Server

    Goforth, J H; Armijo, E V; Atchison, W L; Bartos, Yu; Clark, D A; Day, R D; Deninger, W J; Faehl, R J; Fowler, C M; García, F P; García, O F; Herrera, D H; Herrera, T J; Keinigs, R K; King, J C; Lindemuth, I R; López, E; Martínez, E C; Martínez, D; McGuire, J A; Morgan, D; Oona, H; Oro, D M; Parker, J V; Randolph, R B; Reinovsky, R E; Rodríguez, G; Stokes, J L; Sena, F C; Tabaka, L J; Tasker, D G; Taylor, A J; Torres, D T; Anderson, H D; Broste, W B; Johnson, J B; Kirbie, H C

    1999-01-01

    The authors are developing the RANCHERO high explosive pulsed power (HEPP) system to power cylindrically imploding solid-density liners for hydrodynamics experiments. Their near-term goal is to conduct experiments in the regime pertinent to the Atlas capacitor bank. That is, they will attempt to implode liners of ~50 g mass at velocities approaching 15 km/sec. The basic building block of the HEPP system is a coaxial generator with a 304.8 mm diameter stator, and an initial armature diameter of 152 mm. The armature is expanded by a high explosive (HE) charge detonated simultaneously along its axis. The authors have reported a variety of experiments conducted with generator modules 43 cm long and have presented an initial design for hydrodynamic liner experiments. In this paper, they give a synopsis of their first system test, and a status report on the development of a generator module that is 1.4 m long. (6 refs).

  3. Determination of Nanogram Microparticles from Explosives after Real Open-Air Explosions by Confocal Raman Microscopy.

    Science.gov (United States)

    Zapata, Félix; García-Ruiz, Carmen

    2016-07-05

    Explosives are increasingly being used for terrorist attacks to cause devastating explosions. The detection of their postblast residues after an explosion is a high challenge, which has been barely investigated, particularly using spectroscopic techniques. In this research, a novel methodology using confocal Raman microscopy has been developed for the analysis of postblast residues from 10 open-air explosions caused by 10 different explosives (TNT, RDX, PETN, TATP, HMTD, dynamite, black powder, ANFO, chloratite, and ammonal) commonly used in improvised explosive devices. The methodology for the determination of postblast particles from explosives consisted of examining the samples surfaces with both the naked eye, first, and microscopically (10× and 50×), immediately afterward; and finally, analyzing the selected residues by confocal Raman spectroscopy in order to identify the postblast particles from explosives. Interestingly, confocal Raman microscopy has demonstrated to be highly suitable to rapidly, selectively, and noninvasively analyze postblast microscopic particles from explosives up to the nanogram range.

  4. Degradation of 2,4,6-trinitrotoluene by P. aeruginosa and characterization of some metabolites

    Directory of Open Access Journals (Sweden)

    Hatice Aysun Mercimek

    2015-03-01

    Full Text Available Degradation of 2,4,6-trinitrotoluene (TNT, a nitroaromatic explosive found in the soil and ground water, was investigated using Pseudomonas aeruginosa in in vitroexperiments. Biodegradable abilitiy of this bacteria was performed with 50 and 75 mg L−1 TNT concentrations in a defined liquid medium for 96 h time period. Treatment of TNT in supernatant samples taken at 0, 6, 12, 24, 48, 72 and 96 h from agitated vessels was followed by reverse-phase high-performance liquid chromatography (HPLC. In cultures supplemented with 50 and 75 mgL−1 TNT, after 96 h of incubation 46% and 59% reduction were detected respectively. Two metabolites as degradation intermediates with nitrite release into the medium, 2,4-dinitrotoluene (2,4-DNT and 4-aminodinitrotoluene (4-ADNT, were elucidated by thin layer chromatography (TLC and gas chromatography-mass spectrometry (GC-MS. These findings clearly indicate that Pseudomonas aeruginosa can be used in bioremediation of TNT contaminated sites.

  5. Trace Explosives Detection by Photoluminescence

    OpenAIRE

    2004-01-01

    Some field tests in counter-terrorism efforts to detect explosive traces employ chemistries that yield colored products. We have examined a test kit of this kind, ETKPlus, based on widely used chemistries and employed extensively by the Israel Police. Our investigation focuses on the prospect of gaining sensitivity by replacing the normal colorimetric modality with photoluminescence detection, which, to our knowledge, has not been explored to date. We find two or more orders of magnitude sens...

  6. LX-10 Explosive Damage Studies

    Science.gov (United States)

    2015-03-03

    Suite NAWCWD TM 8757 6 where P = System pressure Vs = System volume n = Covolume we = Weight of explosive burned F = Impetus, f...simultaneously ignited and regress uniformly, and the regression rate depends only on pressure and propellant temperature. 2. Heat losses from the bomb are...and fired in a manometric closed vessel. The pressure -time history was recorded, and an analysis of the data was performed to evaluate both the

  7. EXPLOSION RISK ASSESSMENTS FOR FACILITIES

    Directory of Open Access Journals (Sweden)

    Martin KULICH

    2015-12-01

    Full Text Available In the first part of the article we discus