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Sample records for bacillus amyloliquefaciens ga1

  1. Characterization of amylolysin, a novel lantibiotic from Bacillus amyloliquefaciens GA1.

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    Anthony Arguelles Arias

    Full Text Available BACKGROUND: Lantibiotics are heat-stable peptides characterized by the presence of thioether amino acid lanthionine and methyllanthionine. They are capable to inhibit the growth of Gram-positive bacteria, including Listeria monocytogenes, Staphylococcus aureus or Bacillus cereus, the causative agents of food-borne diseases or nosocomial infections. Lantibiotic biosynthetic machinery is encoded by gene cluster composed by a structural gene that codes for a pre-lantibiotic peptide and other genes involved in pre-lantibiotic modifications, regulation, export and immunity. METHODOLOGY/FINDINGS: Bacillus amyloliquefaciens GA1 was found to produce an antimicrobial peptide, named amylolysin, active on an array of Gram-positive bacteria, including methicillin resistant S. aureus. Genome characterization led to the identification of a putative lantibiotic gene cluster that comprises a structural gene (amlA and genes involved in modification (amlM, transport (amlT, regulation (amlKR and immunity (amlFE. Disruption of amlA led to loss of biological activity, confirming thus that the identified gene cluster is related to amylolysin synthesis. MALDI-TOF and LC-MS analysis on purified amylolysin demonstrated that this latter corresponds to a novel lantibiotic not described to date. The ability of amylolysin to interact in vitro with the lipid II, the carrier of peptidoglycan monomers across the cytoplasmic membrane and the presence of a unique modification gene suggest that the identified peptide belongs to the group B lantibiotic. Amylolysin immunity seems to be driven by only two AmlF and AmlE proteins, which is uncommon within the Bacillus genus. CONCLUSION/SIGNIFICANCE: Apart from mersacidin produced by Bacillus amyloliquefaciens strains Y2 and HIL Y-85,544728, reports on the synthesis of type B-lantibiotic in this species are scarce. This study reports on a genetic and structural characterization of another representative of the type B lantibiotic in B

  2. Bacillus amyloliquefaciens GA1 as a source of potent antibiotics and other secondary metabolites for biocontrol of plant pathogens

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    Brans Alain

    2009-11-01

    Full Text Available Abstract Background Phytopathogenic fungi affecting crop and post-harvested vegetables are a major threat to food production and food storage. To face these drawbacks, producers have become increasingly dependent on agrochemicals. However, intensive use of these compounds has led to the emergence of pathogen resistance and severe negative environmental impacts. There are also a number of plant diseases for which chemical solutions are ineffective or non-existent as well as an increasing demand by consumers for pesticide-free food. Thus, biological control through the use of natural antagonistic microorganisms has emerged as a promising alternative to chemical pesticides for more rational and safe crop management. Results The genome of the plant-associated B. amyloliquefaciens GA1 was sample sequenced. Several gene clusters involved in the synthesis of biocontrol agents were detected. Four gene clusters were shown to direct the synthesis of the cyclic lipopeptides surfactin, iturin A and fengycin as well as the iron-siderophore bacillibactin. Beside these non-ribosomaly synthetised peptides, three additional gene clusters directing the synthesis of the antibacterial polyketides macrolactin, bacillaene and difficidin were identified. Mass spectrometry analysis of culture supernatants led to the identification of these secondary metabolites, hence demonstrating that the corresponding biosynthetic gene clusters are functional in strain GA1. In addition, genes encoding enzymes involved in synthesis and export of the dipeptide antibiotic bacilysin were highlighted. However, only its chlorinated derivative, chlorotetaine, could be detected in culture supernatants. On the contrary, genes involved in ribosome-dependent synthesis of bacteriocin and other antibiotic peptides were not detected as compared to the reference strain B. amyloliquefaciens FZB42. Conclusion The production of all of these antibiotic compounds highlights B. amyloliquefaciens GA1 as

  3. Bacillus velezensis is not a later heterotypic synonym of Bacillus amyloliquefaciens; Bacillus methylotrophicus, Bacillus amyloliquefaciens subsp plantarum and ‘Bacillus oryzicola’ are later heterotypic synonyms of Bacillus

    Science.gov (United States)

    The rhizosphere isolated bacteria belonging to the Bacillus amyloliquefaciens subsp. plantarum and Bacillus methylotrophicus clades are an important group of strains that are used as plant growth promoters and antagonists of plant pathogens. These properties have made these strains the focus of comm...

  4. 77 FR 2910 - Bacillus Amyloliquefaciens Strain D747; Exemption From the Requirement of a Tolerance; Technical...

    Science.gov (United States)

    2012-01-20

    ... AGENCY 40 CFR Part 180 Bacillus Amyloliquefaciens Strain D747; Exemption From the Requirement of a... establishment of an exemption from the requirement of a tolerance for residues of Bacillus amyloliquefaciens strain D747 (formerly known as Bacillus subtilis variant amyloliquefaciens strain D747). This document...

  5. 77 FR 745 - Bacillus Amyloliquefaciens Strain D747; Exemption From the Requirement of a Tolerance

    Science.gov (United States)

    2012-01-06

    ... AGENCY 40 CFR Part 180 Bacillus Amyloliquefaciens Strain D747; Exemption From the Requirement of a... establishes an exemption from the requirement of a tolerance for residues of the Bacillus amyloliquefaciens strain D747 (formerly known as Bacillus subtilis variant amyloliquefaciens strain D747) in or on all...

  6. Bacillusin A, an antibacterial macrodiolide from Bacillus amyloliquefaciens

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    Bioassay-guided fractionation of the organic extracts of a Bacillus amyloliquefaciens strain (AP183) led to the discovery of a new macrocyclic polyene antibiotic, bacillusin A (1). Its structure was assigned by interpretation of NMR and MS spectroscopic data as a novel macrodiolide composed of dimer...

  7. Characterization of Bacillus amyloliquefacien contaminating 75% alcohol disinfectant

    Institute of Scientific and Technical Information of China (English)

    Wanming ZHANG; Yuesha YUAN; Cangli BIAN; Wen ZHANG; Lan WANG; Xianyu TU; Huqiang HUANG

    2008-01-01

    The clinical characterization of Bacillus amy-loliquefacien contaminating 75% alcohol disinfectants were studied. The bacteria were cultured and observed by using bacterial examination under the hospital infec-tion monitor. According to the regulations, the resistance of bacterial to physical and chemical factors was tested. Drug sensitivity tests for 20 commonly used medicines were carried out using a K-B method. The bacterial plas-mids were analyzed using the Birnboim method. The bac-teria were found after being cultured in the clinically-used 75% alcohol disinfectant fluid. Their total number was more than 800 cfu/mL and they were identified as Bacillus amyloliquefacien. The bacteria were also found to be resistant to boiling for 5 min. It grew well in 95% alcohol disinfectant and was insensitive to 84 disinfectant fluids containing chlorine (1000 mg/L) and such disinfec-tants as ozone. They were able to be sterilized better through routine ultraviolet exposure for 30 min or gas pressure. The bacteria contained a 2.5 kb plasmid and were sensitive to 13 drugs and insensitive to 7 drugs of the 20 drugs tested. It was suggested that alcohol dis-infectant fluid was easily contaminated by Bacillus amy-loliquefacien, and the bacteria was resistant to disinfectant fluids such as alcohol and 84 disinfectants.

  8. Degradation of ochratoxin A by Bacillus amyloliquefaciens ASAG1.

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    Chang, Xiaojiao; Wu, Zidan; Wu, Songling; Dai, Yanshi; Sun, Changpo

    2015-01-01

    Ochratoxin A (OTA) is widely found in food and feed products as a mycotoxin contaminant. It is produced by Penicillium species and several Aspergillus species. The identification OTA detoxification microorganisms is believed to be the best approach for decontamination. In this study, we isolated ASAG1, a bacterium with the ability to degrade OTA effectively, from grain depot-stored maize. A 16S rDNA sequencing approach was used to identify this strain as Bacillus amyloliquefaciens ASAG1. The degradation of OTA was detected in both medium and cell-free extracts after incubation with a culture of B. amyloliquefaciens ASAG1 cells. Subsequently, a hydrolysed enzyme (carboxypeptidase) related to the enzymatic conversion of OTA was cloned from the B. amyloliquefaciens ASAG1 genome. Using the Escherichia coli Expression System, we successfully expressed and purified this carboxypeptidase. When this enzyme was incubated with the engineered recombinant E. coli cells, the concentration of OTA was dramatically degraded. Our data therefore indicate that the carboxypeptidase produced by B. amyloliquefaciens ASAG1 is likely responsible for the biodegradation of OTA.

  9. N-terminal amino acid sequence of Bacillus licheniformis alpha-amylase: comparison with Bacillus amyloliquefaciens and Bacillus subtilis Enzymes.

    OpenAIRE

    Kuhn, H.; Fietzek, P P; Lampen, J O

    1982-01-01

    The thermostable, liquefying alpha-amylase from Bacillus licheniformis was immunologically cross-reactive with the thermolabile, liquefying alpha-amylase from Bacillus amyloliquefaciens. Their N-terminal amino acid sequences showed extensive homology with each other, but not with the saccharifying alpha-amylases of Bacillus subtilis.

  10. Bacillus amyloliquefaciens SUBSP. plantarum PROBIOTIC STRAINS AS PROTEASE PRODUCERS

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    E. V. Маtseliukh

    2015-04-01

    Full Text Available Proteases from probiotic strains of the genus Bacillus, just like the antibiotics, bacteriocins and other hydrolytic enzymes, are one of the main factors that determine their biological activity. The aim of this work was to study the synthesis and biochemical properties of proteases from two strains Bacillus amyloliquefaciens subsp. plantarum UCM B-5139 and UCM B-5140 that included in the probiotic Endosporin. The cultivation of strains was carried out in flasks under rotating for two days. The influence of physico-chemical parameters of the reaction medium on proteolytic activity was studied on partially purified protease preparations. Lytic activity was determined by turbidimetric method. On the second day of cultivation B. amyloliquefaciens subsp. plantarum UCM В-5139 and UCM В-5140 synthesized the metal-dependent peptidase and serine protease, respectively. The optimum conditions of their action were the following: temperature 37–40 °C and pH 6.5–7.0. Isolated proteases are able to lyse the living cells of Staphylococcus aureus and Candida albicans. Thus we demonstrated that B. amyloliquefaciens subsp. plantarum UCM B-5140 and UCM B-5139, included in the probiotic veterinary preparation Endosporin, produced proteolytic enzymes that hydrolyze the native insoluble proteins (elastin, fibrin and collagen. These enzymes belong to the group of neutral metal-dependent and serine proteases. They are active under physiological conditions against gram-positive bacteria and yeasts. The application of these proteases in biotechnology is considered.

  11. Statistical analysis of cellulase production in Bacillus amyloliquefaciens UNPDV-22

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    Vasudeo Zambare

    2011-06-01

    Full Text Available The production of cellulase in Bacillus amyloliquefaciens UNPDV-22 was optimized usingresponse surface methodology (RSM. Central composite design (CCD was used to study the interactiveeffect of fermentation medium components (wheat bran, soybean meal, and malt dextrin on cellulaseactivity. Results suggested that wheat bran, soybean meal, and malt dextrin all have significant impacton cellulase production. The use of RSM resulted in a 70% increase in the cellulase activity over thecontrol of non-optimized basal medium. Optimum cellulase production of 11.23 U/mL was obtained in afermentation medium containing wheat bran (1.03%, w/v, soybean meal (2.43%, w/v, and maltdextrin (2.95%, w/v.

  12. Malonylome of the plant growth promoting rhizobacterium with potent biocontrol activity, Bacillus amyloliquefaciens FZB42

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    Ben Fan

    2017-02-01

    Full Text Available The data presented in this article are related to the publication entitled “Malonylome analysis of rhizobacterium Bacillus amyloliquefaciens FZB42 reveals involvement of lysine malonylation in polyketide synthesis and plant–bacteria interactions”(doi:10.1016/j.jprot.2016.11.022 (B. Fan, Y. Li, L. Li et al. [1]. This article presented the raw information of all malonyllysine sites identified by LC-MS/MS in the Bacillus amyloliquefaciens FZB42. Further, the functional features and conservation of the malonylated peptide/proteins were analyzed and made publicly available to enable critical or extended analyses.

  13. Complete Genome Sequence of Bacillus amyloliquefaciens Strain BH072, Isolated from Honey

    NARCIS (Netherlands)

    Zhao, Xin; de Jong, Anne; Zhou, Zhijiang; Kuipers, Oscar P

    2015-01-01

    The genome of Bacillus amyloliquefaciens strain BH072, isolated from a honey sample and showing strong antimicrobial activity against plant pathogens, is 4.07 Mb and harbors 3,785 coding sequences (CDS). Several gene clusters for nonribosomal synthesis of antimicrobial peptides and a complete gene c

  14. Whole genome shotgun sequence of Bacillus amyloliquefaciens TF28, a biocontrol entophytic bacterium.

    Science.gov (United States)

    Zhang, Shumei; Jiang, Wei; Li, Jing; Meng, Liqiang; Cao, Xu; Hu, Jihua; Liu, Yushuai; Chen, Jingyu; Sha, Changqing

    2016-01-01

    Bacillus amyloliquefaciens TF28 is a biocontrol endophytic bacterium that is capable of inhibition of a broad range of plant pathogenic fungi. The strain has the potential to be developed into a biocontrol agent for use in agriculture. Here we report the whole-genome shotgun sequence of the strain. The genome size of B. amyloliquefaciens TF28 is 3,987,635 bp which consists of 3754 protein-coding genes, 65 tandem repeat sequences, 47 minisatellite DNA, 2 microsatellite DNA, 63 tRNA, 7rRNA, 6 sRNA, 3 prophage and CRISPR domains.

  15. [Probiotic features of carotene producing strains Bacillus sp. 1.1 and B. amyloliquefaciens UCM B-5113].

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    Avdeeva, L V; Nechypurenko, O O; Kharhota, M A

    2015-01-01

    Researched probiotic properties of carotinproducing strains Bacillus sp. 1.1 and B. amyloliquefaciens UCM B-5113. It was established that Bacillus sp. 1.1 characterized by high and middle antagonistic activity against museums and actual test cultures and B. amyloliquefaciens UCM B-5113 shown middle and low activity. They grew up and formed a pigment at pH 6.0 in the presence of 0.4% bile. Bacillus sp. 1.1 and B. amyloliquefaciens UCM B-5113 were avirulent, had low antagonistic activity and characterized by susceptibility to antimicrobial agents, excluding colistin. The results suggested the possibility to create based on Bacillus sp. 1.1 and B. amyloliquefaciens UCM B-5113 probiotic preparation.

  16. Isolation and characterization of antifungal peptides produced by Bacillus amyloliquefaciens LBM5006.

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    Benitez, Lisianne Brittes; Velho, Renata Voltolini; Lisboa, Marcia Pagno; Medina, Luis Fernando da Costa; Brandelli, Adriano

    2010-12-01

    Bacillus amyloliquefaciens LBM 5006 produces antagonistic activity against pathogenic bacteria and phytopathogenic fungi, including Aspergillus spp., Fusarium spp., and Bipolaris sorokiniana. PCR analysis revealed the presence of ituD, but not sfp genes, coding for iturin and surfactin, respectively. The antimicrobial substance produced by this strain was isolated by ammonium sulfate precipitation, gel filtration chromatography and 1-butanol extraction. The ultraviolet spectrum was typical of a polypeptide and the infrared spectrum indicates the presence of peptide bonds and acyl group(s). The antimicrobial substance was resistant to proteolytic enzymes and heat treatment, and was reactive with ninhydrin. Mass spectroscopy analysis indicated that B. amyloliquefaciens LBM 5006 produces two antimicrobial peptides, with main peaks at m/z 1,058 Da and 1,464 Da, corresponding to iturin-like and fengycin-like peptides, respectively. B. amyloliquefaciens LBM 5006 showed significant activity against phytopatogenic fungi, showing potential for use as a biocontrol agent or production of antifungal preparations.

  17. Occurrence of Bacillus amyloliquefaciens as a systemic endophyte of vanilla orchids.

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    White, James F; Torres, Mónica S; Sullivan, Raymond F; Jabbour, Rabih E; Chen, Qiang; Tadych, Mariusz; Irizarry, Ivelisse; Bergen, Marshall S; Havkin-Frenkel, Daphna; Belanger, Faith C

    2014-11-01

    We report the occurrence of Bacillus amyloliquefaciens in vanilla orchids (Vanilla phaeantha) and cultivated hybrid vanilla (V. planifolia × V. pompona) as a systemic bacterial endophyte. We determined with light microscopy and isolations that tissues of V. phaeantha and the cultivated hybrid were infected by a bacterial endophyte and that shoot meristems and stomatal areas of stems and leaves were densely colonized. We identified the endophyte as B. amyloliquefaciens using DNA sequence data. Since additional endophyte-free plants and seed of this orchid were not available, additional studies were performed on surrogate hosts Amaranthus caudatus, Ipomoea tricolor, and I. purpurea. Plants of A. caudatus inoculated with B. amyloliquefaciens demonstrated intracellular colonization of guard cells and other epidermal cells, confirming the pattern observed in the orchids. Isolations and histological studies suggest that the bacterium may penetrate deeply into developing plant tissues in shoot meristems, forming endospores in maturing tissues. B. amyloliquefaciens produced fungal inhibitors in culture. In controlled experiments using morning glory seedlings we showed that the bacterium promoted seedling growth and reduced seedling necrosis due to pathogens. We detected the gene for phosphopantetheinyl transferase (sfp), an enzyme in the pathway for production of antifungal lipopeptides, and purified the lipopeptide "surfactin" from cultures of the bacterium. We hypothesize that B. amyloliquefaciens is a robust endophyte and defensive mutualist of vanilla orchids. Whether the symbiosis between this bacterium and its hosts can be managed to protect vanilla crops from diseases is a question that should be evaluated in future research.

  18. 40 CFR 180.1243 - Bacillus subtilis var. amyloliquefaciens strain FZB24; exemption from the requirement of a...

    Science.gov (United States)

    2010-07-01

    ... 40 Protection of Environment 23 2010-07-01 2010-07-01 false Bacillus subtilis var... EXEMPTIONS FOR PESTICIDE CHEMICAL RESIDUES IN FOOD Exemptions From Tolerances § 180.1243 Bacillus subtilis... the requirement of a tolerance for residues of the Bacillus subtilis var. amyloliquefaciens...

  19. Optimization of 2,3-butanediol production in a bioreactor by Bacillus amyloliquefaciens

    OpenAIRE

    Manninen, Elina

    2015-01-01

    Due to the depleting fossil fuel reserves and the ever changing oil prices, the production of 2,3-butanediol has shifted towards more biological methods. Current studies are experimenting with various strains of bacteria and carbon sources to find the optimal production method. Finding the right balance in the production could make it possible to produce 2,3-butanediol in a larger scale. For this purpose, the production of 2,3-butanediol by the bacteria Bacillus amyloliquefaciens was optimize...

  20. Inhibition of Bacillus cereus Growth and Toxin Production by Bacillus amyloliquefaciens RD7-7 in Fermented Soybean Products.

    Science.gov (United States)

    Eom, Jeong Seon; Choi, Hye Sun

    2016-01-01

    Bacillus cereus is a gram-positive, rod-shaped, spore-forming bacterium that has been isolated from contaminated fermented soybean food products and from the environment. B. cereus produces diarrheal and emetic toxins and has caused many outbreaks of foodborne diseases. In this study, we investigated whether B. amyloliquefaciens RD7-7, isolated from rice doenjang (Korean fermented soybean paste), a traditional Korean fermented soybean food, shows antimicrobial activity against B. cereus and regulates its toxin gene expression. B. amyloliquefaciens RD7-7 exhibited strong antibacterial activity against B. cereus and inhibited the expression of B. cereus toxin-related genes (groEL, nheA, nheC, and entFM). We also found that addition of water extracts of soybean and buckwheat soksungjang (Korean fermented soybean paste made in a short time) fermented with B. amyloliquefaciens RD7-7 significantly reduced the growth and toxin expression of B. cereus. These results indicate that B. amyloliquefaciens RD7-7 could be used to control B. cereus growth and toxin production in the fermented soybean food industry. Our findings also provide a basis for the development of candidate biological control agents against B. cereus to improve the safety of fermented soybean food products.

  1. Heterologous expression and enzymatic characterization of γ-glutamyltranspeptidase from Bacillus amyloliquefaciens.

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    Lee, Jung-Min; Lee, Jaejung; Nam, Gyeong-Hwa; Son, Byung-Sam; Jang, Myoung-Uoon; Lee, So-Won; Hurh, Byung-Serk; Kim, Tae-Jip

    2017-02-01

    γ-Glutamyltranspeptidase (GGT) catalyzes the cleavage of γ-glutamyl compounds and the transfer of γ-glutamyl moiety to water or to amino acid/peptide acceptors. GGT can be utilized for the generation of γ-glutamyl peptides or glutamic acid, which are used as food taste enhancers. In the present study, Bacillus amyloliquefaciens SMB469 with high GGT activity was isolated from Doenjang, a traditional fermented soy food of Korea. The gene encoding GGT from B. amyloliquefaciens SMB469 (BaGGT469) was cloned from the isolate, and heterologously expressed in E. coli and B. subtilis. For comparison, three additional GGT genes were cloned from B. subtilis 168, B. licheniformis DSM 13, and B. amyloliquefaciens FZB42. The BaGGT469 protein was composed of 591 amino acids. The final protein comprises two separate polypeptide chains of 45.7 and 19.7 kDa, generated via autocatalytic cleavage. The specific activity of BaGGT469 was determined to be 17.8 U/mg with γ-L-glutamyl-p-nitroanilide as the substrate and diglycine as the acceptor. GGTs from B. amyloliquefaciens showed 1.4- and 1.7-fold higher transpeptidase activities than those from B. subtilis and B. licheniformis, respectively. Especially, recombinant B. subtilis expressing BaGGT469 demonstrated 11- and 23-fold higher GGT activity than recombinant E. coli and the native B. amyloliquefaciens, respectively, did. These results suggest that BaGGT469 can be utilized for the enzymatic production of various γ-glutamyl compounds.

  2. Separation, determination and antifungal activity test of the products from a new Bacillus amyloliquefaciens.

    Science.gov (United States)

    Wang, Tao; Wu, Mian-Bin; Chen, Zheng-Jie; Lin, Jian-Pin; Yang, Li-Rong

    2016-01-01

    A new Bacillus amyloliquefaciens named ZJU-2011 was discovered, and the culture supernatant showed a strong inhibitory effect against Candida albicans. In this study, a novel method was developed to purify the antifungal compounds in high purity. The obtained products were analysed by high performance liquid chromatography and proven to be of high purity. Mass spectrometry showed that the molecular weights of the two bioactive components were 270 and 288, respectively, and their structures were determined to be bacilysin and chlorotetaine by using (1)H and (13)C nuclear magnetic resonance spectroscopy. To the best of our knowledge, this is the first time that B. amyloliquefaciens has been reported to produce bacilysin and chlorotetaine simultaneously. The minimum inhibitory concentration of chlorotetaine against six common fungal pathogens were determined to be in the range of 1.8-7.8 μg/mL.

  3. Functions of lipopeptides bacillomycin D and fengycin in antagonism of Bacillus amyloliquefaciens C06 towards Monilinia fructicola.

    Science.gov (United States)

    Liu, Jun; Zhou, Ting; He, Dan; Li, Xiu-zhen; Wu, Huijun; Liu, Wenzhe; Gao, Xuewen

    2011-01-01

    In previous studies, Bacillus amyloliquefaciens C06 has been proven to be effective in controlling brown rot of stone fruit caused by Monilinia fructicola. When tested in vitro, cell-free filtrate of B. amyloliquefaciens C06 significantly inhibited mycelial growth and conidial germination of the fungal pathogen. This study aimed to determine the role of the antifungal compound(s) in the cell-free filtrate of B. amyloliquefaciens C06 by an approach combining a DNA-based suppression subtractive hybridization (SSH) method with MALDI-TOF-MS analysis. It was demonstrated that B. amyloliquefaciens C06 harbored two genes, bmyC and fenD, involved in biosynthesis of bacillomycin D and fengycin, two lipopeptides belonging to the iturin and fengycin family, respectively. To determine the roles of bacillomycin D and fengycin of B. amyloliquefaciens C06 in suppressing M. fructicola, the mutants of B. amyloliquefaciens C06 deficient in producing bacillomy- cin D, fengycin or both were constructed, and evaluated in vitro together with the wild-type B. amyloliquefaciens C06. The results indicated that bacillomycin D and fengycin jointly contributed to the inhibition of conidial germination of M. fructicola, and fengycin played a major role in suppressing mycelial growth of the fungal pathogen.

  4. Bacillus amyloliquefaciens biofilm as a novel biosorbent for the removal of crystal violet from solution.

    Science.gov (United States)

    Sun, Pengfei; Hui, Cai; Wang, Sheng; Wan, Li; Zhang, Xin; Zhao, Yuhua

    2016-03-01

    Bacillus amyloliquefaciens biofilm shows promise for use in the control of soil-borne pathogens; however, it has never been used to treat dye-polluted wastewaters. Here, we propose the novel idea of using B. amyloliquefaciens biofilm for the adsorption of crystal violet (CV) from liquids. The relative contents of three main elements (C1s, O1s, and N1s) in the biofilm were 65.55%, 21.21%, and 13.24%, respectively. The results of Fourier transform infrared (FTIR) spectra and X-ray photoelectron spectroscopy revealed that the biofilm contained β-type heteropolysaccharide and proteins. The ruggedness of the biofilm surface due to embedded bacterial cells suggested potential adsorption sites for CV molecules. The maximum capacity for CV adsorption was 582.41mg/g, which is the largest value reported to date for any CV adsorbent. Blueshift occurred in the FTIR spectrum of CV-loaded biofilm as compared to that of virgin biofilm, confirming a physical adsorption process. We found that CV adsorption by biofilm was complex and resulted from intraparticle diffusion as well as surface adsorption. Our data also suggested that the process is exothermal and spontaneous, with micropore diffusion as the rate-limiting step. These findings provide a basis for using B. amyloliquefaciens biofilm as an efficient adsorbent for treating CV-polluted wastewaters.

  5. Enhanced root colonization and biocontrol activity of Bacillus amyloliquefaciens SQR9 by abrB gene disruption.

    Science.gov (United States)

    Weng, Jun; Wang, Yang; Li, Juan; Shen, Qirong; Zhang, Ruifu

    2013-10-01

    Root colonization by antagonistic bacteria is a prerequisite for successful biological control, and the instability of colonization under varying environmental conditions has accentuated the need to improve the colonization activity. Root colonization by Bacillus spp. is mainly determined by chemotaxis and biofilm formation, and both functions are negatively controlled by the global transcription regulator AbrB. Here, we disrupted the gene abrB in Bacillus amyloliquefaciens SQR9, which has been proven to be a promising biocontrol agent of cucumber and watermelon wilt disease. Chemotaxis, biofilm formation, and colonization activities as well as biocontrol efficiency were measured and compared between the wild-type strain of SQR9 and the abrB mutant. The data presented in this article demonstrate that the colonization and biocontrol activity of B. amyloliquefaciens SQR9 could be significantly improved by abrB gene disruption. The results offer a new strategy to enhance the biocontrol efficacy of B. amyloliquefaciens SQR9.

  6. Molecular characterization of alkaline protease of Bacillus amyloliquefaciens SP1 involved in biocontrol of Fusarium oxysporum.

    Science.gov (United States)

    Guleria, Shiwani; Walia, Abhishek; Chauhan, Anjali; Shirkot, C K

    2016-09-02

    An alkaline protease gene was amplified from genomic DNA of Bacillus amyloliquefaciens SP1 which was involved in effective biocontrol of Fusarium oxysporum. We investigated the antagonistic capacity of protease of B. amyloliquifaciens SP1, under in vitro conditions. The 5.62 fold purified enzyme with specific activity of 607.69U/mg reported 24.14% growth inhibition of F. oxysporum. However, no antagonistic activity was found after addition of protease inhibitor i.e. PMSF (15mM) to purified enzyme. An 1149bp nucleotide sequence of protease gene encoded 382 amino acids of 43kDa and calculated isoelectric point of 9.29. Analysis of deduced amino acid sequence revealed high homology (86%) with subtilisin E of Bacillus subtilis. The B. amyloliquefaciens SP1 protease gene was expressed in Escherichiax coli BL21. The expressed protease was secreted into culture medium by E. coli and exhibited optimum activity at pH8.0 and 60°C. The most reliable three dimensional structure of alkaline protease was determined using Phyre 2 server which was validated on the basis of Ramachandran plot and ERRAT value. The expression and structure prediction of the enzyme offers potential value for commercial application in agriculture and industry.

  7. Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates

    LENUS (Irish Health Repository)

    Fan, Ben

    2012-06-21

    AbstractBackgroundPlant root exudates have been shown to play an important role in mediating interactions between plant growth-promoting rhizobacteria (PGPR) and their host plants. Most investigations were performed on Gram-negative rhizobacteria, while much less is known about Gram-positive rhizobacteria. To elucidate early responses of PGPR to root exudates, we investigated changes in the transcriptome of a Gram-positive PGPR to plant root exudates.ResultsBacillus amyloliquefaciens FZB42 is a well-studied Gram-positive PGPR. To obtain a comprehensive overview of FZB42 gene expression in response to maize root exudates, microarray experiments were performed. A total of 302 genes representing 8.2% of the FZB42 transcriptome showed significantly altered expression levels in the presence of root exudates. The majority of the genes (261) was up-regulated after incubation of FZB42 with root exudates, whereas only 41 genes were down-regulated. Several groups of the genes which were strongly induced by the root exudates are involved in metabolic pathways relating to nutrient utilization, bacterial chemotaxis and motility, and non-ribosomal synthesis of antimicrobial peptides and polyketides.ConclusionsHere we present a transcriptome analysis of the root-colonizing bacterium Bacillus amyloliquefaciens FZB42 in response to maize root exudates. The 302 genes identified as being differentially transcribed are proposed to be involved in interactions of Gram-positive bacteria with plants.

  8. Characterization of an extremely salt-tolerant and thermostable phytase from Bacillus amyloliquefaciens US573.

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    Boukhris, Ines; Farhat-Khemakhem, Ameny; Blibech, Monia; Bouchaala, Kameleddine; Chouayekh, Hichem

    2015-09-01

    The extracellular phytase produced by the Bacillus amyloliquefaciens US573 strain, isolated from geothermal soil located in Southern Tunisia was purified and characterized. This calcium-dependent and bile-stable enzyme (PHY US573) was optimally active at pH 7.5 and 70 °C. It showed a good stability at pH ranging from 4 to 10, and especially, an exceptional thermostability as it recovered 50 and 62% of activity after heating for 10 min at 100 and 90 °C, respectively. In addition, PHY US573 was found to be extremely salt-tolerant since it preserved 80 and 95% of activity in the presence of 20 g/l of NaCl and LiCl, respectively. The gene corresponding to PHY US573 was cloned. It encodes a 383 amino acids polypeptide exhibiting 99% identity with the highly thermostable phytases from Bacillus sp. MD2 and B. amyloliquefaciens DS11 (3 and 5 residues difference, respectively), suggesting the existence of common molecular determinants responsible for their remarkable heat stability. Overall, our findings illustrated that in addition to its high potential for application in feed industry, the salt tolerance of the PHY US573 phytase, may represent an exciting new avenue for improvement of phosphorus-use efficiency of salt-tolerant plants in soils with high salt and phytate content.

  9. Antagonistic Activities of Novel Peptides from Bacillus amyloliquefaciens PT14 against Fusarium solani and Fusarium oxysporum.

    Science.gov (United States)

    Kim, Young Gwon; Kang, Hee Kyoung; Kwon, Kee-Deok; Seo, Chang Ho; Lee, Hyang Burm; Park, Yoonkyung

    2015-12-09

    Bacillus species have recently drawn attention due to their potential use in the biological control of fungal diseases. This paper reports on the antifungal activity of novel peptides isolated from Bacillus amyloliquefaciens PT14. Reverse-phase high-performance liquid chromatography revealed that B. amyloliquefaciens PT14 produces five peptides (PT14-1, -2, -3, -4a, and -4b) that exhibit antifungal activity but are inactive against bacterial strains. In particular, PT14-3 and PT14-4a showed broad-spectrum antifungal activity against Fusarium solani and Fusarium oxysporum. The PT14-4a N-terminal amino acid sequence was identified through Edman degradation, and a BLAST homology analysis showed it not to be identical to any other protein or peptide. PT14-4a displayed strong fungicidal activity with minimal inhibitory concentrations of 3.12 mg/L (F. solani) and 6.25 mg/L (F. oxysporum), inducing severe morphological deformation in the conidia and hyphae. On the other hand, PT14-4a had no detectable hemolytic activity. This suggests PT14-4a has the potential to serve as an antifungal agent in clinical therapeutic and crop-protection applications.

  10. Atividade antibacteriana do extrato bruto de Bacillus amyloliquefaciens frente a diferentes indicadores.

    Directory of Open Access Journals (Sweden)

    D. SCHULZ

    2008-10-01

    Full Text Available

    O presente estudo teve como objetivo obter um extrato bruto de Bacillus amyloliquefaciens, padronizado pela dosagem de proteínas, e quantificar sua atividade antibacteriana pelo halo de inibição do crescimento de Listeria monocytogenes NCTC 098630, Escherichia coli ATCC 25922, Salmonella typhimurium ATCC 14028, Staphylococcus aureus ATCC 25923, Enterococcus faecalis ATCC 29212 Enterobacter aerogenes ATCC 13048 e Pseudomonas aeruginosa ATCC 9027. O extrato bruto de Bacillus amyloliquefaciens somente apresentou atividade antibacteriana frente Listeria monocytogenes NCTC 098630. Constatou-se que a concentração responsável por 50% da máxima atividade antibacteriana foi 29,22 g do extrato bruto, com um halo de inibição de aproximadamente 4 mm.

  11. Efisiensi Penggunaan Energi Metabolis Ransum Berbasis Onggok yang Difermentasi Bacillus amyloliquefaciens pada Ayam Broiler

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    Wizna

    2008-12-01

    Full Text Available An experiment was conducted to determine the effects of using Bacillus amyloliquefaciens-fermented tapioca by-products (onggok on the metabolism energy differences in the diets to the performance of broilers. Eighty unsexed three day old broiler chicks were randomly allocated into 20 pens (four chicks/pen. This experiment was arranged in a completely randomized design with four dietary treatments (3000, 2900, 2800 and 2700 kkal/kg for broilers of energy metabolism in diets and five replications. Measured variables were feed consumption, average body weight gain, feed conversion, carcass percentage, abdominal fat percentage and income over feed cost (IOFC. Results of the experiment indicated that feed consumption, average body weight gain, feed conversion, carcass percentage, abdominal fat percentage and income over feed cost (IOFC were not affected (P>0.05 by levels of metabolism energy in the diets for broilers. In conclusion, Bacillus amyloliquefaciens-fermented tapioca by-products (onggok can be included up to 40% with energy metabolism 2700 kkal/kg in broilers diets and improved the efficiency of metabolizable energy.

  12. Complete genome sequence of Bacillus amyloliquefaciens strain Co1-6, a plant growth-promoting rhizobacterium of Calendula officinalis

    Energy Technology Data Exchange (ETDEWEB)

    Koeberl, Martina; White, Richard A.; Erschen, Sabine; Spanberger, Nora; El-Arabi, Tarek F.; Jansson, Janet K.; Berg, Gabriele

    2015-08-13

    The genome sequence of Bacillus amyloliquefaciens strain Co1-6, a plant growth-promoting rhizobacterium (PGPR) with broad-spectrum antagonistic activities against plant pathogenic fungi, bacteria and nematodes, consists of a single 3.9 Mb circular chromosome. The genome reveals genes putatively responsible for its promising biocontrol and PGP properties.

  13. Deciphering the conserved genetic loci implicated in plant disease control through comparative genomics of Bacillus amyloliquefaciens subsp. plantarum strains

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    Mohammad J Hossain

    2015-08-01

    Full Text Available To understand the growth-promoting and disease-inhibiting activities of plant growth-promoting rhizobacteria (PGPR strains, the genomes of 12 Bacillus subtilis group strains with PGPR activity were sequenced and analyzed. These B. subtilis strains exhibited high genomic diversity, whereas the genomes of B. amyloliquefaciens strains (a member of the B. subtilis group are highly conserved. A pairwise BLASTp matrix revealed that gene family similarity among Bacillus genomes ranges from 32- 90%, with 2,839 genes within the core genome of B. amyloliquefaciens subsp. plantarum. Comparative genomic analyses of B. amyloliquefaciens strains identified genes that are linked with biological control and colonization of roots and/or leaves, including 73 genes uniquely associated with subsp. plantarum strains that have predicted functions related to signaling, transportation, secondary metabolite production, and carbon source utilization. Although B. amyloliquefaciens subsp. plantarum strains contain gene clusters that encode many different secondary metabolites, only polyketide biosynthetic clusters that encode difficidin and macrolactin are conserved within this subspecies. To evaluate their role in plant pathogen biocontrol, genes involved in secondary metabolite biosynthesis were deleted in B. amyloliquefaciens subsp. plantarum strain, revealing that difficidin expression is critical in reducing the severity of disease, caused by Xanthomonas axonopodis pv. vesicatoria in tomato plants. This study defines genomic features of PGPR strains and links them with biocontrol activity and with host colonization.

  14. Ultra high pressure homogenization (UHPH) inactivation of Bacillus amyloliquefaciens spores in phosphate buffered saline (PBS) and milk

    OpenAIRE

    Dong, Peng; Erika S. Georget; Aganovic, Kemal; Heinz, Volker; Mathys, Alexander

    2015-01-01

    Ultra high pressure homogenization (UHPH) opens up new areas for dynamic high pressure assisted thermal sterilization of liquids. Bacillus amyloliquefaciens spores are resistant to high isostatic pressure and temperature and were suggested as potential surrogate for high pressure thermal sterilization validation. B. amyloliquefaciens spores suspended in PBS buffer (0.01 M, pH 7.0), low fat milk (1.5%, pH 6.7), and whole milk (3.5%, pH 6.7) at initial concentration of ~106 CFU/mL were subjecte...

  15. Identification of up-regulated proteins potentially involved in the antagonism mechanism of Bacillus amyloliquefaciens G1.

    Science.gov (United States)

    Cao, Haipeng; Zheng, Weidong; He, Shan; Wang, Hao; Wang, Tu; Lu, Liqun

    2013-06-01

    The use of Bacillus probiotics has been demonstrated as a promising method in the biocontrol of bacterial diseases in aquaculture. However, the molecular antibacterial mechanism of Bacillus still remains unclear. In order to explore the antibacterial mechanism of the potential antagonistic Bacillus amyloliquefaciens strain G1, comparative proteomics between B. amyloliquefaciens strain G1 and its non-antagonistic mutant strain was investigated. The 2-dimensional electrophoresis gel maps of their total extracted proteins were described and 42 different proteins were found to be highly expressed in strain G1 in comparison with those in the mutant strain. 35 of these up-regulated proteins were successfully identified using MALDI-TOF-TOF MS and databank analysis, and their biological functions were analyzed through the KEGG database. The increased expression of these proteins suggested that high levels of energy metabolism, biosynthesis and stress resistance could play important roles in strain G1's antagonism. To our knowledge, this is the first report on the proteins involved in the antagonism mechanism of B. amyloliquefaciens using a proteomic approach and the proteomic data also contribute to a better understanding of the molecular basis for the antagonism of B. amyloliquefaciens.

  16. Metabolomic Profiles of Aspergillus oryzae and Bacillus amyloliquefaciens During Rice Koji Fermentation

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    Da Eun Lee

    2016-06-01

    Full Text Available Rice koji, used early in the manufacturing process for many fermented foods, produces diverse metabolites and enzymes during fermentation. Using gas chromatography time-of-flight mass spectrometry (GC-TOF-MS, ultrahigh-performance liquid chromatography linear trap quadrupole ion trap tandem mass spectrometry (UHPLC-LTQ-IT-MS/MS, and multivariate analysis we generated the metabolite profiles of rice koji produced by fermentation with Aspergillus oryzae (RK_AO or Bacillus amyloliquefaciens (RK_BA for different durations. Two principal components of the metabolomic data distinguished the rice koji samples according to their fermenter species and fermentation time. Several enzymes secreted by the fermenter species, including α-amylase, protease, and β-glucosidase, were assayed to identify differences in expression levels. This approach revealed that carbohydrate metabolism, serine-derived amino acids, and fatty acids were associated with rice koji fermentation by A. oryzae, whereas aromatic and branched chain amino acids, flavonoids, and lysophospholipids were more typical in rice koji fermentation by B. amyloliquefaciens. Antioxidant activity was significantly higher for RK_BA than for RK_AO, as were the abundances of flavonoids, including tricin, tricin glycosides, apigenin glycosides, and chrysoeriol glycosides. In summary, we have used MS-based metabolomics and enzyme activity assays to evaluate the effects of using different microbial species and fermentation times on the nutritional profile of rice koji.

  17. Gene cloning, expression, and characterization of the Bacillus amyloliquefaciens PS35 lipase

    Directory of Open Access Journals (Sweden)

    Palanisamy Kanmani

    2015-01-01

    Full Text Available AbstractLipases are enzymes of immense industrial relevance, and, therefore, are being intensely investigated. In an attempt to characterize lipases at molecular level from novel sources, a lipase gene from Bacillus amyloliquefaciens PS35 was cloned, heterologously expressed in Escherichia coli DH5α cells and sequenced. It showed up to 98% homology with other lipase sequences in the NCBI database. The recombinant enzyme was then purified from E. coli culture, resulting in a 19.41-fold purification with 9.7% yield. It displayed a preference for long-chain para-nitrophenyl esters, a characteristic that is typical of true lipases. Its optimum pH and temperature were determined to be 8.0 and 40 °C, respectively. The half-lives were 2.0, 1.0 and 0.5 h at 50 °C, 60 °C and 70 °C, respectively. The metal ions K+and Fe3+ enhanced the enzyme activity. The enzyme displayed substantial residual activity in the presence of various tested chemical modifiers, and interestingly, the organic solvents, such as n-hexane and toluene, also favored the enzyme activity. Thus, this study involves characterization of B. amyloliquefaciens lipase at molecular level. The key outcomes are novelty of the bacterial source and purification of the enzyme with desirable properties for industrial applications.

  18. Bacteriocin-like substance from Bacillus amyloliquefaciens shows remarkable inhibition of Acanthamoeba polyphaga.

    Science.gov (United States)

    Benitez, Lisianne Brittes; Caumo, Karin; Brandelli, Adriano; Rott, Marilise Brittes

    2011-03-01

    The effectiveness of a bacteriocin-like substance (BLS) produced by Bacillus amyloliquefaciens was tested against Acanthamoeba polyphaga strains, and its cytotoxic potential on Vero cells was investigated. Amebicidal activity of the purified BLS was tested by plate bioassays with concentrations ranging from 12.5 to 6,400 AU mL(-1). Damage to A. pholyphaga cells was monitored using an inverted microscope and counted in a Fuchs-Rosenthal chamber after 24, 48, and 72 h. According to the results obtained, the BLS showed remarkable amebicidal and amebostatic effect on A. polyphaga and showed no cytotoxicity on the Vero cells. These results may have great relevance in the development of new acanthamoebicidal compounds.

  19. Isolation and Characterization of a Broad Spectrum Bacteriocin from Bacillus amyloliquefaciens RX7.

    Science.gov (United States)

    Lim, Kong Boon; Balolong, Marilen P; Kim, Sang Hoon; Oh, Ju Kyoung; Lee, Ji Yoon; Kang, Dae-Kyung

    2016-01-01

    We isolated a Bacillus strain, RX7, with inhibitory activity against Listeria monocytogenes from soil and identified it as Bacillus amyloliquefaciens based on 16S rRNA gene sequencing. The inhibitory activity was stable over a wide range of pH and was fully retained after 30 min at 80°C, after which it decreased gradually at higher temperatures. The activity was sensitive to the proteolytic action of α-chymotrypsin, proteinase-K, and trypsin, indicating its proteinaceous nature. This bacteriocin was active against a broad spectrum of bacteria and the fungus Candida albicans. Direct detection of antimicrobial activity on a sodium dodecyl sulfate-polyacrylamide gel suggested an apparent molecular mass of approximately 5 kDa. Ammonium sulfate precipitation and anion-exchange and gel permeation chromatography integrated with reverse phase-high-performance liquid chromatography were used for bacteriocin purification. Automated N-terminal Edman degradation of the purified RX7 bacteriocin recognized the first 15 amino acids as NH2-X-Ala-Trp-Tyr-Asp-Ile-Arg-Lys-Leu-Gly-Asn-Lys-Gly-Ala, where the letter X in the sequence indicates an unknown or nonstandard amino acid. Based on BLAST similarity search and multiple alignment analysis, the obtained partial sequence showed high homology with the two-peptide lantibiotic haloduracin (HalA1) from Bacillus halodurans, although at least two amino acids differed between the sequences. A time-kill study demonstrated a bactericidal mode of action of RX7 bacteriocin.

  20. Bacillus amyloliquefaciens COMO POTENCIAL BIOCONSERVANTE DE ALIMENTOS: DETERMINAÇÃO DO PERFIL DE PROTEÍNAS E AMINOGRAMA

    Directory of Open Access Journals (Sweden)

    D. SCHULZ

    2008-09-01

    Full Text Available

    Avaliou-se o perfil de proteínas em gel de poliacrilamida e o aminograma do extrato bruto de Bacillus amyloliquefaciens. O extrato bruto de Bacillus amyloliquefaciens foi obtido por precipitação, centrifugação, diálise e esterilização por filtração. Como microrganismo indicador foi utilizado Listeria monocytogenes NCTC 098630 a 105 UFC/mL. Na determinação da composição global de aminoácidos em eletroforese SDS (10%/PAGE (7,5 a 20% foram constatadas seis bandas com pesos moleculares aparentes de: 14,8; 20; 29; 30; 34 e 56,2 kDa e composto principalmente de aminoácidos hidrofóbicos (não polares, incluindo a prolina (446,77 ppm, leucina (11,03 ppm, valina (6,27 ppm, isoleucina (4,59 ppm, alanina (2,91 ppm e glicina (1,87 ppm. Os resultados obtidos sugerem que o extrato bruto de Bacillus amyloliquefaciens é composto principalmente de proteases e outras enzimas bacteriolíticas.

  1. Mosquitocidal Bacillus amyloliquefaciens: Dynamics of growth & production of novel pupicidal biosurfactant

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    I Geetha

    2014-01-01

    Full Text Available Background & objectives: A strain of Bacillus amyloliquefaciens (VCRC B483 producing mosquito larvicidal and pupicidal biosurfactant was isolated from mangrove forest soil. The present study was aimed at studying the kinetics of growth and production of the mosquitocidal biosurfactant by this bacterium. Methods: Dynamics of growth, sporulation and production of mosquitocidal biosurfactant were studied by standard microbiological methods. The mosquitocidal biosurfactant was precipitated from the culture supernatant and bioassayed against immature stages of mosquito vectors to determine lethal dose and lethal time. The activity, biological and biochemical properties of the biosurfactant have also been studied. Results: The pupal stages of mosquitoes were found to be more vulnerable to the biosurfactant produced by this bacterium with Anopheles stephensi being the most vulnerable species. The median lethal time (LT 50 was found to be 1.23 h when the pupal stages of the above species were exposed to lethal concentration LC 90 (9 µg/ml dosage of the biosurfactant. Production of biosurfactant was found to increase with incubation time and maximum biomass, maximum quantity of biosurfactant (7.9 mg/ml, maximum biosurfactant activity (6 kBS unit/mg and maximum mosquitocidal activity (5 µg/ml were attained by 72 h of growth. The lipopeptide nature of the biosurfactant was confirmed by β-haemolysis, lipase activity, biofilm forming capacity, thermostability and biochemical analysis. Interpretation & conclusions: The mosquitocidal biosurfactant produced by B. amyloliquefaciens (VCRC B483 may be a prospective alternative molecule for use in mosquito control programmes involving bacterial biopesticides.

  2. Optimization of Thermostable Alpha-Amylase Production Via Mix Agricultural-Residues and Bacillus amyloliquefaciens

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    Shalini RAI

    2014-03-01

    Full Text Available This study reports utilization of mixture of wheat and barley bran (1:1 for the production of thermostable alpha-amylase enzyme through a spore former, heat tolerant strain of Bacillus amyloliquefaciens in solid state fermentation. Maximum yield of alpha-amylase (252.77 U mL-1 was obtained in following optimized conditions, inoculums size 2 mL (2 × 106 CFU/mL, moisture 80%, pH 7±0.02, NaCl (3%, temperature 38±1°C, incubation for 72 h, maltose (1% and tryptone (1%. After SSF crude enzyme was purified via ammonium sulfate precipitation, ion exchange and column chromatography by DEAE Cellulose. Purified protein showed a molecular weight of 42 kDa by SDS-PAGE electrophoresis. After purification, purified enzyme was characterized against several enzymes inhibitors such as temperature, NaCl, pH, metal and surfactants. Pure enzyme was highly active over broad temperature (50-70°C, NaCl concentration (0.5-4 M, and pH (6-10 ranges, indicating it’s a thermoactive and alkali-stable nature. Moreover, CaCl2, MnCl2, =-mercaptoethanol were found to stimulate the amylase activity, whereas FeCl3, sodium dodecyl sulfate (SDS, CuCl3 and ethylenediaminetetraacetic acid (EDTA strongly inhibited the enzyme. Moreover, enzyme specificity and thermal stability conformed by degradation of different soluble starch up to 55°C. Therefore, the present study proved that the extracellular alpha-amylase extracted through wheat flour residues by organism B. amyloliquefaciens MCCB0075, both have considerable potential for industrial application owing to its properties.

  3. Functional role of an endophytic Bacillus amyloliquefaciens in enhancing growth and disease protection of invasive English ivy (Hedera helix L.)

    Science.gov (United States)

    Soares, Marcos Antonio; Li, Jai-Yan; Bergen, Marshall; da Silva, Joaquim Manoel; Kowalski, Kurt P.; White, James Francis

    2015-01-01

    BackgroundWe hypothesize that invasive English ivy (Hedera helix) harbors endophytic microbes that promote plant growth and survival. To evaluate this hypothesis, we examined endophytic bacteria in English ivy and evaluated effects on the host plant.MethodsEndophytic bacteria were isolated from multiple populations of English ivy in New Brunswick, NJ. Bacteria were identified as a single species Bacillus amyloliquefaciens. One strain of B. amyloliquefaciens, strain C6c, was characterized for indoleacetic acid (IAA) production, secretion of hydrolytic enzymes, phosphate solubilization, and antibiosis against pathogens. PCR was used to amplify lipopeptide genes and their secretion into culture media was detected by MALDI-TOF mass spectrometry. Capability to promote growth of English ivy was evaluated in greenhouse experiments. The capacity of C6c to protect plants from disease was evaluated by exposing B+ (bacterium inoculated) and B− (non-inoculated) plants to the necrotrophic pathogen Alternaria tenuissima.ResultsB. amyloliquefaciens C6c systemically colonized leaves, petioles, and seeds of English ivy. C6c synthesized IAA and inhibited plant pathogens. MALDI-TOF mass spectrometry analysis revealed secretion of antifungal lipopeptides surfactin, iturin, bacillomycin, and fengycin. C6c promoted the growth of English ivy in low and high soil nitrogen conditions. This endophytic bacterium efficiently controlled disease caused by Alternaria tenuissima.ConclusionsThis study suggests that B. amyloliquefaciens plays an important role in enhancing growth and disease protection of English ivy.

  4. Isolation and Characterization of a Broad Spectrum Bacteriocin from Bacillus amyloliquefaciens RX7

    Directory of Open Access Journals (Sweden)

    Kong Boon Lim

    2016-01-01

    Full Text Available We isolated a Bacillus strain, RX7, with inhibitory activity against Listeria monocytogenes from soil and identified it as Bacillus amyloliquefaciens based on 16S rRNA gene sequencing. The inhibitory activity was stable over a wide range of pH and was fully retained after 30 min at 80°C, after which it decreased gradually at higher temperatures. The activity was sensitive to the proteolytic action of α-chymotrypsin, proteinase-K, and trypsin, indicating its proteinaceous nature. This bacteriocin was active against a broad spectrum of bacteria and the fungus Candida albicans. Direct detection of antimicrobial activity on a sodium dodecyl sulfate-polyacrylamide gel suggested an apparent molecular mass of approximately 5 kDa. Ammonium sulfate precipitation and anion-exchange and gel permeation chromatography integrated with reverse phase-high-performance liquid chromatography were used for bacteriocin purification. Automated N-terminal Edman degradation of the purified RX7 bacteriocin recognized the first 15 amino acids as NH2-X-Ala-Trp-Tyr-Asp-Ile-Arg-Lys-Leu-Gly-Asn-Lys-Gly-Ala, where the letter X in the sequence indicates an unknown or nonstandard amino acid. Based on BLAST similarity search and multiple alignment analysis, the obtained partial sequence showed high homology with the two-peptide lantibiotic haloduracin (HalA1 from Bacillus halodurans, although at least two amino acids differed between the sequences. A time-kill study demonstrated a bactericidal mode of action of RX7 bacteriocin.

  5. Antifungal Activity of Isolated Bacillus amyloliquefaciens SYBC H47 for the Biocontrol of Peach Gummosis.

    Science.gov (United States)

    Li, Xunhang; Zhang, Yanzhou; Wei, Zhiwen; Guan, Zhengbing; Cai, Yujie; Liao, Xiangru

    2016-01-01

    The gummosis disease is caused by Botryosphaeria dothidea (Moug. ex. Fr) Ces. et de Not., and it is one of the most important diseases of stone fruits worldwide. The use of biocontrol as an alternative approach to synthetic chemical fungicides has aroused general concern about how to control plant diseases that are caused by phytopathogens. The aim of this study is to isolate Bacillus strains from raw honeys with the capacity to inhibit B. dothidea and to explore the mechanisms by which they could be used in the biocontrol of peach gummosis. Bacillus amyloliquefaciens SYBC H47 was isolated and identified on the basis of its physiological and biochemical characteristics and its 16S rRNA and gyrB gene sequences. The cell suspension and the cell-free supernatant of its culture showed significant antifungal activity against Aspergillus niger, Mucor racemosus, Fusarium oxysporum, Penicillium citrinum, and Candida albicans by agar-diffusion assays. The primary antifungal substances were bacillomycin L, fengycin, and surfactin, which were analyzed by HPLC LC/ESI-MS/MS. Bacillomycin L showed the best inhibitory effect against conidial germination of B. dothidea, followed by fengycin and surfactin. Surfactin had limited effects on mycelial growth, contrary to those of bacillomycin L and fengycin. However, a mixture of the three lipopeptides had a synergistic effect that disrupted the structure of the conidia and mycelia. In order to reduce the production cost, the use of waste frying peanut oil and soy oil as the sole carbon source increased the lipopeptide yield levels by approximately 17% (2.42 g/L) and 110% (4.35 g/L), respectively. In a field trial, the decreases in the infected gummosis rate (IGR) and the disease severity index (DSI) through cell suspension treatments were 20% and 57.5% (in 2014), respectively, and 40% and 57.5% (in 2015), respectively, in comparison with the control. In conclusion, B. amyloliquefaciens SYBC H47 could inhibit the germination of conidia

  6. Antifungal Activity of Isolated Bacillus amyloliquefaciens SYBC H47 for the Biocontrol of Peach Gummosis

    Science.gov (United States)

    Zhang, Yanzhou; Wei, Zhiwen; Guan, Zhengbing; Cai, Yujie; Liao, Xiangru

    2016-01-01

    The gummosis disease is caused by Botryosphaeria dothidea (Moug. ex. Fr) Ces. et de Not., and it is one of the most important diseases of stone fruits worldwide. The use of biocontrol as an alternative approach to synthetic chemical fungicides has aroused general concern about how to control plant diseases that are caused by phytopathogens. The aim of this study is to isolate Bacillus strains from raw honeys with the capacity to inhibit B. dothidea and to explore the mechanisms by which they could be used in the biocontrol of peach gummosis. Bacillus amyloliquefaciens SYBC H47 was isolated and identified on the basis of its physiological and biochemical characteristics and its 16S rRNA and gyrB gene sequences. The cell suspension and the cell-free supernatant of its culture showed significant antifungal activity against Aspergillus niger, Mucor racemosus, Fusarium oxysporum, Penicillium citrinum, and Candida albicans by agar-diffusion assays. The primary antifungal substances were bacillomycin L, fengycin, and surfactin, which were analyzed by HPLC LC/ESI-MS/MS. Bacillomycin L showed the best inhibitory effect against conidial germination of B. dothidea, followed by fengycin and surfactin. Surfactin had limited effects on mycelial growth, contrary to those of bacillomycin L and fengycin. However, a mixture of the three lipopeptides had a synergistic effect that disrupted the structure of the conidia and mycelia. In order to reduce the production cost, the use of waste frying peanut oil and soy oil as the sole carbon source increased the lipopeptide yield levels by approximately 17% (2.42 g/L) and 110% (4.35 g/L), respectively. In a field trial, the decreases in the infected gummosis rate (IGR) and the disease severity index (DSI) through cell suspension treatments were 20% and 57.5% (in 2014), respectively, and 40% and 57.5% (in 2015), respectively, in comparison with the control. In conclusion, B. amyloliquefaciens SYBC H47 could inhibit the germination of conidia

  7. Plantazolicin, a novel microcin B17/streptolysin S-like natural product from Bacillus amyloliquefaciens FZB42.

    Science.gov (United States)

    Scholz, Romy; Molohon, Katie J; Nachtigall, Jonny; Vater, Joachim; Markley, Andrew L; Süssmuth, Roderich D; Mitchell, Douglas A; Borriss, Rainer

    2011-01-01

    Here we report on a novel thiazole/oxazole-modified microcin (TOMM) from Bacillus amyloliquefaciens FZB42, a Gram-positive soil bacterium. This organism is well known for stimulating plant growth and biosynthesizing complex small molecules that suppress the growth of bacterial and fungal plant pathogens. Like microcin B17 and streptolysin S, the TOMM from B. amyloliquefaciens FZB42 undergoes extensive posttranslational modification to become a bioactive natural product. Our data show that the modified peptide bears a molecular mass of 1,335 Da and displays antibacterial activity toward closely related Gram-positive bacteria. A cluster of 12 genes that covers ∼10 kb is essential for the production, modification, export, and self-immunity of this natural product. We have named this compound plantazolicin (PZN), based on the association of several producing organisms with plants and the incorporation of azole heterocycles, which derive from Cys, Ser, and Thr residues of the precursor peptide.

  8. Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing.

    Science.gov (United States)

    Kröber, Magdalena; Verwaaijen, Bart; Wibberg, Daniel; Winkler, Anika; Pühler, Alfred; Schlüter, Andreas

    2016-08-10

    The strain Bacillus amyloliquefaciens FZB42 is a plant growth promoting rhizobacterium (PGPR) and biocontrol agent known to keep infections of lettuce (Lactuca sativa) by the phytopathogen Rhizoctonia solani down. Several mechanisms, including the production of secondary metabolites possessing antimicrobial properties and induction of the host plant's systemic resistance (ISR), were proposed to explain the biocontrol effect of the strain. B. amyloliquefaciens FZB42 is able to form plaques (biofilm-like structures) on plant roots and this feature was discussed to be associated with its biocontrol properties. For this reason, formation of B. amyloliquefaciens biofilms was studied at the transcriptional level using high-throughput sequencing of whole transcriptome cDNA libraries from cells grown under biofilm-forming conditions vs. planktonic growth. Comparison of the transcriptional profiles of B. amyloliquefaciens FZB42 under these growth conditions revealed a common set of highly transcribed genes mostly associated with basic cellular functions. The lci gene, encoding an antimicrobial peptide (AMP), was among the most highly transcribed genes of cells under both growth conditions suggesting that AMP production may contribute to biocontrol. In contrast, gene clusters coding for synthesis of secondary metabolites with antimicrobial properties were only moderately transcribed and not induced in biofilm-forming cells. Differential gene expression revealed that 331 genes were significantly up-regulated and 230 genes were down-regulated in the transcriptome of B. amyloliquefaciens FZB42 under biofilm-forming conditions in comparison to planktonic cells. Among the most highly up-regulated genes, the yvqHI operon, coding for products involved in nisin (class I bacteriocin) resistance, was identified. In addition, an operon whose products play a role in fructosamine metabolism was enhanced in its transcription. Moreover, genes involved in the production of the extracellular

  9. Isolation and biochemical characterisation of a bacteriocin-like substance produced by Bacillus amyloliquefaciens An6.

    Science.gov (United States)

    Ayed, Hanen Ben; Maalej, Hana; Hmidet, Noomen; Nasri, Moncef

    2015-12-01

    This study focuses on the isolation and characterisation of a peptide with bacteriocin-like properties from Bacillus amyloliquefaciens An6. Incubation conditions were optimised, and the effects of the incubation period and of carbon and nitrogen sources were investigated. The produced bacteriocin was partially purified with ammonium sulphate precipitation, dialysis and ultrafiltration and was then biochemically characterised. Maximum bacteriocin production was achieved after 48h of incubation in a culture medium containing 20g/L starch and 10g/L yeast extract, with an initial pH 8.0 at 30°C under continuous agitation at 200rpm. The bacteriocin was sequentially purified and its molecular weight was determined to be 11kDa by sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE). The bacteriocin was relatively heat-resistant and was not sensitive to acid and alkaline conditions (pH 4.0-10.0). Its inhibitory activity was sensitive to proteinase K but was resistant to the proteolytic action of alcalase, trypsin, chymotrypsin and pepsin. In conclusion, bacteriocin An6, owing its wide spectrum of activity as well as its high tolerance to acidic and alkaline pH values, temperature and proteases shows great potential for use as a food biopreservative.

  10. Bacterial Traits Involved in Colonization of Arabidopsis thaliana Roots by Bacillus amyloliquefaciens FZB42.

    Science.gov (United States)

    Dietel, Kristin; Beator, Barbara; Budiharjo, Anto; Fan, Ben; Borriss, Rainer

    2013-03-01

    Colonization studies previously performed with a green-fluorescent-protein, GFP, labeled derivative of Bacillus amyloliquefaciens FZB42 revealed that the bacterium behaved different in colonizing surfaces of plant roots of different species (Fan et al., 2012). In order to extend these studies and to elucidate which genes are crucial for root colonization, we applied targeted mutant strains to Arabidopsis seedlings. The fates of root colonization in mutant strains impaired in synthesis of alternative sigma factors, non-ribosomal synthesis of lipopeptides and polyketides, biofilm formation, swarming motility, and plant growth promoting activity were analyzed by confocal laser scanning microscopy. Whilst the wild-type strain heavily colonized surfaces of root tips and lateral roots, the mutant strains were impaired in their ability to colonize root tips and most of them were unable to colonize lateral roots. Ability to colonize plant roots is not only dependent on the ability to form biofilms or swarming motility. Six mutants, deficient in abrB-, sigH-, sigD-, nrfA-, yusV and RBAM017410, but not affected in biofilm formation, displayed significantly reduced root colonization. The nrfA- and yusV-mutant strains colonized border cells and, partly, root surfaces but did not colonize root tips or lateral roots.

  11. Improving the neutral phytase activity from Bacillus amyloliquefaciens DSM 1061 by site-directed mutagenesis.

    Science.gov (United States)

    Xu, Wei; Shao, Rong; Wang, Zupeng; Yan, Xiuhua

    2015-03-01

    Neutral phytase is used as a feed additive for degradation of anti-nutritional phytate in aquatic feed industry. Site-directed mutagenesis of Bacillus amyloliquefaciens DSM 1061 phytase was performed with an aim to increase its activity. Mutation residues were chosen based on multiple sequence alignments and structure analysis of neutral phytsaes from different microorganisms. The mutation sites on surface (D148E, S197E and N156E) and around the active site (D52E) of phytase were selected. Analysis of the phytase variants showed that the specific activities of mutants D148E and S197E remarkably increased by about 35 and 13% over a temperature range of 40-75 °C at pH 7.0, respectively. The k cat of mutants D148E and S197E were 1.50 and 1.25 times than that of the wild-type phytase, respectively. Both D148E and S197E showed much higher thermostability than that of the wild-type phytase. However, mutants N156E and D52E led to significant loss of specific activity of the enzyme. Structural analysis revealed that these mutations may affect conformation of the active site of phytase. The present mutant phytases D148E and S197E with increased activities and thermostabilities have application potential as additives in aquaculture feed.

  12. Biocontrol agent Bacillus amyloliquefaciens LJ02 induces systemic resistance against cucurbits powdery mildew.

    Science.gov (United States)

    Li, Yunlong; Gu, Yilin; Li, Juan; Xu, Mingzhu; Wei, Qing; Wang, Yuanhong

    2015-01-01

    Powdery mildew is a fungal disease found in a wide range of plants and can significantly reduce crop yields. Bacterial strain LJ02 is a biocontrol agent (BCA) isolated from a greenhouse in Tianjin, China. In combination of morphological, physiological, biochemical and phylogenetic analyses, strain LJ02 was classified as a new member of Bacillus amyloliquefaciens. Greenhouse trials showed that LJ02 fermentation broth (LJ02FB) can effectively diminish the occurrence of cucurbits powdery mildew. When treated with LJ02FB, cucumber seedlings produced significantly elevated production of superoxide dismutase, peroxidase, polyphenol oxidase and phenylalanine ammonia lyase as compared to that of the control. We further confirmed that the production of free salicylic acid (SA) and expression of one pathogenesis-related (PR) gene PR-1 in cucumber leaves were markedly elevated after treating with LJ02FB, suggesting that SA-mediated defense response was stimulated. Moreover, LJ02FB-treated cucumber leaves could secrete resistance-related substances into rhizosphere that inhibit the germination of fungi spores and the growth of pathogens. Finally, we separated bacterium and its fermented substances to test their respective effects and found that both components have SA-inducing activity and bacterium plays major roles. Altogether, we identified a BCA against powdery mildew and its mode of action by inducing systemic resistance such as SA signaling pathway.

  13. Improved poly-γ-glutamic acid production in Bacillus amyloliquefaciens by modular pathway engineering.

    Science.gov (United States)

    Feng, Jun; Gu, Yanyan; Quan, Yufen; Cao, Mingfeng; Gao, Weixia; Zhang, Wei; Wang, Shufang; Yang, Chao; Song, Cunjiang

    2015-11-01

    A Bacillus amyloliquefaciens strain with enhanced γ-PGA production was constructed by metabolically engineering its γ-PGA synthesis-related metabolic networks: by-products synthesis, γ-PGA degradation, glutamate precursor synthesis, γ-PGA synthesis and autoinducer synthesis. The genes involved in by-products synthesis were firstly deleted from the starting NK-1 strain. The obtained NK-E7 strain with deletions of the epsA-O (responsible for extracellular polysaccharide synthesis), sac (responsible for levan synthesis), lps (responsible for lipopolysaccharide synthesis) and pta (encoding phosphotransacetylase) genes, showed increased γ-PGA purity and slight increase of γ-PGA titer from 3.8 to 4.15 g/L. The γ-PGA degrading genes pgdS (encoding poly-gamma-glutamate depolymerase) and cwlO (encoding cell wall hydrolase) were further deleted. The obtained NK-E10 strain showed further increased γ-PGA production from 4.15 to 9.18 g/L. The autoinducer AI-2 synthetase gene luxS was deleted in NK-E10 strain and the resulting NK-E11 strain showed comparable γ-PGA titer to NK-E10 (from 9.18 to 9.54 g/L). In addition, we overexpressed the pgsBCA genes (encoding γ-PGA synthetase) in NK-E11 strain; however, the overexpression of these genes led to a decrease in γ-PGA production. Finally, the rocG gene (encoding glutamate dehydrogenase) and the glnA gene (glutamine synthetase) were repressed by the expression of synthetic small regulatory RNAs in NK-E11 strain. The rocG-repressed NK-anti-rocG strain exhibited the highest γ-PGA titer (11.04 g/L), which was 2.91-fold higher than that of the NK-1 strain. Fed-batch cultivation of the NK-anti-rocG strain resulted in a final γ-PGA titer of 20.3g/L, which was 5.34-fold higher than that of the NK-1 strain in shaking flasks. This work is the first report of a systematically metabolic engineering approach that significantly enhanced γ-PGA production in a B. amyloliquefaciens strain. The engineering strategies explored here are

  14. Bacillus amyloliquefaciens ssp. plantarum strains as potential protective starter cultures for the production of Bikalga, an alkaline fermented food

    DEFF Research Database (Denmark)

    Compaor, C.S.; Nielsen, D.S.; Sawadogo-Lingani, H.

    2013-01-01

    Aims: To identify and screen dominant Bacillus spp. strains isolated from Bikalga, fermented seeds of Hibiscus sabdariffa for their antimicrobial activities in brain heart infusion (BHI) medium and in a H. sabdariffa seed-based medium. Further, to characterize the antimicrobial substances produced....... They produced several lipopeptide antibiotics and showed good potential for biological control of Bikalga. Significance and Impact of the Study: Pathogenic bacteria often occur in spontaneous food fermentations. This is the first report to identify indigenous B. amyloliquefaciens ssp. plantarum strains...

  15. Ultra high pressure homogenization (UHPH) inactivation of Bacillus amyloliquefaciens spores in phosphate buffered saline (PBS) and milk

    Science.gov (United States)

    Dong, Peng; Georget, Erika S.; Aganovic, Kemal; Heinz, Volker; Mathys, Alexander

    2015-01-01

    Ultra high pressure homogenization (UHPH) opens up new areas for dynamic high pressure assisted thermal sterilization of liquids. Bacillus amyloliquefaciens spores are resistant to high isostatic pressure and temperature and were suggested as potential surrogate for high pressure thermal sterilization validation. B. amyloliquefaciens spores suspended in PBS buffer (0.01 M, pH 7.0), low fat milk (1.5%, pH 6.7), and whole milk (3.5%, pH 6.7) at initial concentration of ~106 CFU/mL were subjected to UHPH treatments at 200, 300, and 350 MPa with an inlet temperature at ~80°C. Thermal inactivation kinetics of B. amyloliquefaciens spores in PBS and milk were assessed with thin wall glass capillaries and modeled using first-order and Weibull models. The residence time during UHPH treatments was estimated to determine the contribution of temperature to spore inactivation by UHPH. No sublethal injury was detected after UHPH treatments using sodium chloride as selective component in the nutrient agar medium. The inactivation profiles of spores in PBS buffer and milk were compared and fat provided no clear protective effect for spores against treatments. Treatment at 200 MPa with valve temperatures lower than 125°C caused no reduction of spores. A reduction of 3.5 log10CFU/mL of B. amyloliquefaciens spores was achieved by treatment at 350 MPa with a valve temperature higher than 150°C. The modeled thermal inactivation and observed inactivation during UHPH treatments suggest that temperature could be the main lethal effect driving inactivation. PMID:26236296

  16. Ultra high pressure homogenization (UHPH) inactivation of Bacillus amyloliquefaciens spores in phosphate buffered saline (PBS) and milk.

    Science.gov (United States)

    Dong, Peng; Georget, Erika S; Aganovic, Kemal; Heinz, Volker; Mathys, Alexander

    2015-01-01

    Ultra high pressure homogenization (UHPH) opens up new areas for dynamic high pressure assisted thermal sterilization of liquids. Bacillus amyloliquefaciens spores are resistant to high isostatic pressure and temperature and were suggested as potential surrogate for high pressure thermal sterilization validation. B. amyloliquefaciens spores suspended in PBS buffer (0.01 M, pH 7.0), low fat milk (1.5%, pH 6.7), and whole milk (3.5%, pH 6.7) at initial concentration of ~10(6) CFU/mL were subjected to UHPH treatments at 200, 300, and 350 MPa with an inlet temperature at ~80°C. Thermal inactivation kinetics of B. amyloliquefaciens spores in PBS and milk were assessed with thin wall glass capillaries and modeled using first-order and Weibull models. The residence time during UHPH treatments was estimated to determine the contribution of temperature to spore inactivation by UHPH. No sublethal injury was detected after UHPH treatments using sodium chloride as selective component in the nutrient agar medium. The inactivation profiles of spores in PBS buffer and milk were compared and fat provided no clear protective effect for spores against treatments. Treatment at 200 MPa with valve temperatures lower than 125°C caused no reduction of spores. A reduction of 3.5 log10CFU/mL of B. amyloliquefaciens spores was achieved by treatment at 350 MPa with a valve temperature higher than 150°C. The modeled thermal inactivation and observed inactivation during UHPH treatments suggest that temperature could be the main lethal effect driving inactivation.

  17. Enhanced Iron and Selenium Uptake in Plants by Volatile Emissions of Bacillus amyloliquefaciens (BF06

    Directory of Open Access Journals (Sweden)

    Jianfei Wang

    2017-01-01

    Full Text Available Volatile organic compounds (VOCs released by plant growth-promoting rhizobacteria (PGPR are involved in promoting growth and triggering systemic resistance (ISR in plants. Importantly, the release of VOCs by some PGPR strains confers improved plant uptake of nutrient elements from the soil. However, the underlying mechanisms of VOCs-regulated nutrient acquisition remain elusive. In this study, VOCs were extracted and identified from Bacillus amyloliquefaciens (strain BF06 using gas chromatography–mass spectrometry (GC–MS. BF06 VOCs exposure significantly promoted the growth and photosynthesis of Arabidopsis plants. To explore how microbial VOCs stimulate growth in plants, gene expression profiles of Arabidopsis seedlings exposed to BF06 VOCs were examined using transcriptomic analyses. In screening differentially expressed genes (DEGs, most upregulated DEGs were found to be related to amino acid transport, iron (Fe uptake and homeostasis, and sulfate transport. Furthermore, BF06 VOCs significantly enhanced Fe absorption in plants under Fe-limited conditions. However, when nitric oxide (NO synthesis was inhibited, BF06 VOCs exposure could not substantially augment Fe acquisition in plants under alkaline stress, indicating that VOCs-mediated plant uptake of Fe was required for induction of root NO accumulation. In addition, BF06 VOCs exposure led to a marked increase in some genes encoding for sulfate transporters, and further increased Se accumulation in plants. Intriguingly, BF06 VOCs exposure failed to increase Se uptake in sultr1;2 mutants, which may indicate that high-level transcription of these sulfate transporters induced by BF06 VOCs was essential for enhancing Se absorption by plants. Taken together, our results demonstrated the potential of VOCs released by this strain BF06 to increase Fe and Se uptake in plants.

  18. Bacillus amyloliquefaciens strains isolated from moisture-damaged buildings produced surfactin and a substance toxic to mammalian cells.

    Science.gov (United States)

    Mikkola, Raimo; Andersson, Maria A; Grigoriev, Pavel; Teplova, Vera V; Saris, Nils-Erik L; Rainey, Frederick A; Salkinoja-Salonen, Mirja S

    2004-04-01

    Fungicidic Bacillus amyloliquefaciens strains isolated from the indoor environment of moisture-damaged buildings contained heat-stable, methanol-soluble substances that inhibited motility of boar spermatozoa within 15 min of exposure and killed feline lung cells in high dilution in 1 day. Boar sperm cells lost motility, cellular ATP, and NADH upon contact to the bacterial extract (0.2 microg dry wt/ml). Two bioactive substances were purified from biomass of the fungicidal isolates. One partially characterized substance, 1,197 Da, was moderately hydrophobic and contained leucine, proline, serine, aspartic acid, glutamic acid and tyrosine, in addition to chromophore(s) absorbing at 365 nm. In boar sperm and human neural cells (Paju), the compound depolarized the transmembrane potentials of mitochondria (Delta Psi(m)) and the plasma membrane (Delta Psi(p)) after a 20-min exposure and formed cation-selective channels in lipid membranes, with a selectivity K(+):Na(+):Ca(2+) of 26:15:3.5. The other substance was identified as a plasma-membrane-damaging lipopeptide surfactin. Plate-grown biomass of indoor Bacillus amyloliquefaciens contained ca. 7% of dry weight of the two substances, 1,197 Da and surfactin, in a ratio of 1:6 (w:w). The in vitro observed simultaneous collapse of both cytosolic and mitochondrial ATP in the affected mammalian cell, induced by the 1,197-Da cation channel, suggests potential health risks for occupants of buildings contaminated with such toxins.

  19. Conclusion on the peer review of the pesticide risk assessment of the active substance Bacillus amyloliquefaciens subsp. plantarum strain D747

    Directory of Open Access Journals (Sweden)

    European Food Safety Authority

    2014-04-01

    Full Text Available The conclusions of the European Food Safety Authority (EFSA following the peer review of the initial risk assessments carried out by the competent authority of the rapporteur Member State Germany, for the pesticide active substance Bacillus amyloliquefaciens subsp. plantarum strain D747 are reported.  The context of the peer review was that required by Commission Regulation (EU No 188/2011.  The conclusions were reached on the basis of the evaluation of the representative uses of Bacillus amyloliquefaciens subsp. plantarum strain D747 as a fungicide on table and wine grapes. The reliable endpoints concluded as being appropriate for use in regulatory risk assessment, derived from the available studies and literature in the dossier peer reviewed, are presented.  Missing information identified as being required by the regulatory framework is listed.  The assessment of potential transfer of genetic material from Bacillus amyloliquefaciens subsp. plantarum strain D747 to other organisms cannot not be finalised.  The consumer and re-entry worker risk assessment cannot be finalised as data are missing on the levels of secondary metabolites/toxins produced by the organism on plants.  Furthermore, the risk assessment for non-target organisms and the groundwater exposure assessment from secondary metabolites/toxins could not be finalised.  As the soil exposure assessments could not be finalised, also the risk to soil-dwelling organisms from Bacillus amyloliquefaciens subsp. plantarum strain D747 could not be finalised.

  20. Biosurfactins production by Bacillus amyloliquefaciens R3 and their antibacterial activity against multi-drug resistant pathogenic E. coli.

    Science.gov (United States)

    Chi, Zhe; Rong, Yan-Jun; Li, Yang; Tang, Mei-Juan; Chi, Zhen-Ming

    2015-05-01

    In this work, the anti-Escherichia coli activity of the bioactive substances produced by Bacillus amyloliquefaciens R3 was examined. A new and cheap medium for production of the anti-E. coli substances which contained 20.0 g L(-1) soybean powder, 20.0 g L(-1) wheat flour, pH 6.0 was developed. A crude surfactant concentration of 0.48 mg mL(-1) was obtained after 27 h of 10-L fermentation, and the diameter of the clear zone on the plate seeded with the pathogenic E. coli 2# was 23.3 mm. A preliminary characterization suggested that the anti-E. coli substances produced by B. amyloliquefaciens R3 were the biosurfactins (F1, F2, F3, F4, and F5) with amino acids (GLLVDLL) and hydroxy fatty acids (of 12-15 carbons in length). It was found that all the strains of the pathogenic E. coli showed resistance to several different antibiotics, suggesting that they were the multi-drug resistance and all the strains of the pathogenic E. coli were sensitive to the biosurfactins, indicating that the biosurfactins produced by B. amyloliquefaciens R3 had a broad spectrum of antibacterial activity against the pathogenic E. coli with multi-drug resistant profiles. After the treatment with the purified biosurfactin (F1), the cell membrane of both the whole cells and protoplasts of the E. coli 2# was damaged and the whole cells of the bacterium were broken.

  1. Comparison of three Bacillus amyloliquefaciens strains growth behaviour and evaluation of the spoilage risk during bread shelf-life.

    Science.gov (United States)

    Valerio, F; Di Biase, M; Huchet, V; Desriac, N; Lonigro, S L; Lavermicocca, P; Sohier, D; Postollec, F

    2015-02-01

    This study aims at the characterisation of growth behaviour of three strains of Bacillus amyloliquefaciens, isolated from ropy bread (ATCC8473), wheat grain (ISPA-S109.3) and semolina (ISPA-N9.1) to estimate rope spoilage risk in pan bread during shelf-life using the Sym'Previus tool. Cardinal values and growth/no growth boundaries were determined in broth, while artificial spore inoculations were performed in dough for various pan bread recipes to compare experimental counts with in silico growth simulations. Finally, two storage scenarios were tested to determine the probability to reach a spoilage threshold during bread shelf-life. Similarly to the safety criteria fixed for Listeria monocytogenes contamination in foodstuff complying with EC regulation, a potential rope spoilage threshold was arbitrary fixed at 5 log CFU/g for B. amyloliquefaciens. This study further underlines a higher rope spoilage potential of the ISPA strains as compared to the ATCC strain, thus emphasizing the interest to characterise both wild strains and reference strain to account for biological variability. In conclusion, this study showed that available decision making tools which are largely recognized to predict behaviour of pathogenic strains, shall also be used with spoilage strains to help maintain food quality and extend shelf-life.

  2. Key Impact of an Uncommon Plasmid on Bacillus amyloliquefaciens subsp. plantarum S499 Developmental Traits and Lipopeptide Production

    Science.gov (United States)

    Molinatto, Giulia; Franzil, Laurent; Steels, Sébastien; Puopolo, Gerardo; Pertot, Ilaria; Ongena, Marc

    2017-01-01

    The rhizobacterium Bacillus amyloliquefaciens subsp. plantarum S499 (S499) is particularly efficient in terms of the production of cyclic lipopeptides, which are responsible for the high level of plant disease protection provided by this strain. Sequencing of the S499 genome has highlighted genetic differences and similarities with the closely related rhizobacterium B. amyloliquefaciens subsp. plantarum FZB42 (FZB42). More specifically, a rare 8008 bp plasmid (pS499) harboring a rap-phr cassette constitutes a major distinctive element between S499 and FZB42. By curing this plasmid, we demonstrated that its presence is crucial for preserving the typical physiology of S499 cells. Indeed, the growth rate and extracellular proteolytic activity were significantly affected in the cured strain (S499 P−). Furthermore, pS499 made a significant contribution to the regulation of cyclic lipopeptide production. Surfactins and fengycins were produced in higher quantities by S499 P−, whereas lower amounts of iturins were detected. In line with the increase in surfactin release, bacterial motility improved after curing, whereas the ability to form biofilm was reduced in vitro. The antagonistic effect against phytopathogenic fungi was also limited for S499 P−, most probably due to the reduction of iturin production. With the exception of this last aspect, S499 P− behavior fell between that of S499 and FZB42, suggesting a role for the plasmid in shaping some of the phenotypic differences observed in the two strains. PMID:28154555

  3. Plant-Microbe Communication Enhances Auxin Biosynthesis by a Root-Associated Bacterium, Bacillus amyloliquefaciens SQR9.

    Science.gov (United States)

    Liu, Yunpeng; Chen, Lin; Zhang, Nan; Li, Zunfeng; Zhang, Guishan; Xu, Yu; Shen, Qirong; Zhang, Ruifu

    2016-04-01

    Mechanisms by which beneficial rhizobacteria promote plant growth include tryptophan-dependent indole-3-acetic acid (IAA) synthesis. The abundance of tryptophan in the rhizosphere, however, may influence the level of benefit provided by IAA-producing rhizobacteria. This study examined the cucumber-Bacillus amyloliquefaciens SQR9 system and found that SQR9, a bacterium previously shown to enhance the growth of cucumber, increased root secretion of tryptophan by three- to fourfold. Using a split-root system, SQR9 colonization of roots in one chamber not only increased tryptophan secretion from the noninoculated roots but also increased the expression of the cucumber tryptophan transport gene but not the anthranilate synthesis gene in those roots. The increased tryptophan in isolated rhizosphere exudates was sufficient to support increased IAA production by SQR9. Moreover, SQR9 colonization of roots in one chamber in the split-root system resulted in sufficient tryptophan production by the other roots to upregulate SQR9 IAA biosynthesis genes, including a 27-fold increase in the indole-3-acetonitrilase gene yhcX during subsequent colonization of those roots. Deletion of yhcX eliminated SQR9-mediated increases in root surface area, likely by reducing IAA-stimulated lateral root growth. This study demonstrates a chemical dialogue between B. amyloliquefaciens and cucumber in which this communication contributes to bacteria-mediated plant-growth enhancement.

  4. Isolation, identification and characterization of Bacillus amyloliquefaciens BZ-6, a bacterial isolate for enhancing oil recovery from oily sludge.

    Science.gov (United States)

    Liu, Wuxing; Wang, Xiaobing; Wu, Longhua; Chen, Mengfang; Tu, Chen; Luo, Yongming; Christie, Peter

    2012-06-01

    Over 100 biosurfactant-producing microorganisms were isolated from oily sludge and petroleum-contaminated soil from Shengli oil field in north China. Sixteen of the bacterial isolates produced biosurfactants and reduced the surface tension of the growth medium from 71 to BZ-6 was found to be the most efficient strain and the three phases (oil, water and sediment) were separated automatically after the sludge was treated with the culture medium of BZ-6. Based on morphological, physiological characteristics and molecular identification, isolate BZ-6 was identified as Bacillus amyloliquefaciens. The biosurfactant produced by isolate BZ-6 was purified and analyzed by high performance liquid chromatography-electrospray ionization tandem mass spectrometry. There were four ion peaks representing four different fengycin A homologues.

  5. Antifungal activity of the lipopeptides produced by Bacillus amyloliquefaciens anti-CA against Candida albicans isolated from clinic.

    Science.gov (United States)

    Song, Bo; Rong, Yan-Jun; Zhao, Ming-Xin; Chi, Zhen-Ming

    2013-08-01

    The bacterium Bacillus amyloliquefaciens anti-CA isolated from mangrove system was found to be able to actively kill Candida albicans isolated from clinic. The bacterial strain anti-CA could produce high level of bioactive substance, amylase and protease in the cheap medium containing 2.0 % soybean meal, 2.0 % wheat flour, pH 6.5 within 26 h. After purification, the main bioactive substance was confirmed to be a cyclic lipopeptide containing a heptapeptide, L-Asp→L-Leu→L-Leu→L-Val→L-Val→L-Glu→L-Leu and a 3-OH fatty acid (15 carbons). In addition to C. albicans, the purified lipopeptide can also kill many yeast strains including Metschnikowia bicuspidata, Candida tropicalis, Yarrowia lipolytica and Saccharomyces cerevisiae. After treated by the purified lipopeptide, both the whole cells and protoplasts of C. albicans were destroyed.

  6. INFLUENCE OF BACILLUS AMYLOLIQUEFACIENS SUBSP. PLANTARUM IMV B-7404 STRAIN EXOMETABOLITES ON PHENYLALANINE AMMONIA-LYASE ACTIVITY IN WINTER WHEAT SEEDLINGS.

    Science.gov (United States)

    Dragovoz, I V; Korzh, Yu V; Leonova, N O; Iliash, V M; Avdeeva, L V

    2015-01-01

    Influence of Bacillus amyloliquefaciens subsp. plantarum IMV B-7404 strain exometabolites on phenylalanine ammonia-lyase (PAL, EC 4.3.1.24) activity in winter wheat seedlings has been studied. A significant increase of PAL activity at 4-6 hours after treatment of plant roots with Bacillus amyloliquefaciens subsp. plantarum IMVB-7404 strain exometabolites and in case of leaves infection with Bipolaris sorokiniana plant pathogen has been shown. It was established that PAL activity changed along with a decrease of the infected surface area of the leaves evidenced for the induction of response in winter wheat seedlings induced by IMV B-7404 strain exometabolites. It was concluded that the studied exponents could be used as model systems in the research of phytoimmunity induction mechanisms.

  7. Bacillus amyloliquefaciens subsp. plantarum GR53, a potent biocontrol agent resists Rhizoctonia disease on Chinese cabbage through hormonal and antioxidants regulation.

    Science.gov (United States)

    Kang, Sang-Mo; Radhakrishnan, Ramalingam; Lee, In-Jung

    2015-10-01

    The fungus Rhizoctonia solani is one of the causal agents of numerous diseases that affect crop growth and yield. The aim of this present investigation was to identify a biocontrol agent that acts against R. solani and to determine the agent's protective effect through phytohormones and antioxidant regulation in experimentally infected Chinese cabbage plants. Four rhizospheric soil bacterial isolates GR53, GR169, GR786, and GR320 were tested for their antagonistic activity against R. solani. Among these isolates, GR53 significantly suppressed fungal growth. GR53 was identified as Bacillus amyloliquefaciens subsp. plantarum by phylogenetic analysis of the 16S rDNA sequence. The biocontrol activity of B. amyloliquefaciens subsp. plantarum GR53 was tested in Chinese cabbage plants under controlled conditions. Results showed that R. solani inhibited plant growth (length, width, fresh and dry weight of leaves) by reducing chlorophyll and total phenolic content, as well as by increasing the levels of salicylic acid, jasmonic acid, abscisic acid, and DPPH scavenging activity. By regulating the levels of these compounds, the co-inoculation of B. amyloliquefaciens subsp. plantarum GR53 heightened induced systemic resistance in infected Chinese cabbage, effectively mitigating R. solani-induced damaging effects and improving plant growth. The results obtained from this study suggest that B. amyloliquefaciens subsp. plantarum GR53 is an effective biocontrol agent to prevent the damage caused by R. solani in Chinese cabbage plants.

  8. [Antagonistic activity of Bacillus amyloliquefaciens subsp. plantarum IMV B-7404 and BIM B-439D strains towards pathogenic bacteria and micromycetes].

    Science.gov (United States)

    Avdeeva, L V; Dragovoz, I V; Korzh, Iu V; Leonova, N O; Iutinskaia, G A; Berezhnaia, A V; Kuptsov, V N; Mandrik, M N; Kolomiets, É I

    2014-01-01

    In this study the antagonistic activity of strains Bacillus amyloliquefaciens subsp. plantarum IMV B-7404 and BIM B-439D against bacterial and fungal pathogens of agricultural crops has been researched. It is shown that both strains of bacilli demonstrated a high level of antagonism to the vascular bacteriosis pathogen, average level of antagonism to micromycetes--root rot pathogens. To ofiobulez pathogen strain B. amyloliquefaciens subsp. plantarum BIM B-439D was more active. Cultural liquid of this strain effectively inhibited the spore's germination of pathogenic micromycetes Penicillium expansum and Botrytis cinerea. Both strains of bacilli synthesized several hydrolytic exoenzymes: proteases, amylases, β-glucanases, chitinases and xylanases. The obtained data suggest the possibility of expanding the range of strain B. amyloliquefaciens subsp. plantarum BIM B-439D application for plant protection, as well as the need for further researches of the exometabolites spectrum of strain B. amyloliquefaciens subsp. plantarum IMV B-7404 and their biological activity in order to create an effective bioformulation for crop protection.

  9. Anti-methicillin Resistant Staphylococcus aureus Compound Isolation from Halophilic Bacillus amyloliquefaciens MHB1 and Determination of Its Mode of Action Using Electron Microscope and Flow Cytometry Analysis.

    Science.gov (United States)

    Jeyanthi, Venkadapathi; Velusamy, Palaniyandi

    2016-06-01

    The aim of this study was to purify, characterize and evaluate the antibacterial activity of bioactive compound against methicillin-resistant Staphylococcus aureus (MRSA). The anti-MRSA compound was produced by a halophilic bacterial strain designated as MHB1. The MHB1 strain exhibited 99 % similarity to Bacillus amyloliquefaciens based on 16S rRNA gene analysis. The culture conditions of Bacillus amyloliquefaciens MHB1 were optimized using nutritional and environmental parameters for enhanced anti-MRSA compound production. The pure bioactive compound was isolated using silica gel column chromatography and Semi-preparative High-performance liquid chromatography (Semi-preparative HPLC). The Thin layer chromatography, Fourier transform infrared spectroscopy and proton NMR ((1)H NMR) analysis indicated the phenolic nature of the compound. The molecular mass of the purified compound was 507 Da as revealed by Liquid chromatography-mass spectrometry (LC-MS) analysis. The compound inhibited the growth of MRSA with minimum inhibitory concentration (MIC) of 62.5 µg mL(-1). MRSA bacteria exposed to 4× MIC of the compound and the cell viability was determined using flow cytometric analysis. Scanning electron microscope and Transmission electron microscope analysis was used to determine the ultrastructural changes in bacteria. This is the first report on isolation of anti-MRSA compound from halophilic B. amyloliquefaciens MHB1 and could act as a promising biocontrol agent.

  10. Effects of potential probiotic Bacillus amyloliquefaciens [corrected] FPTB16 on systemic and cutaneous mucosal immune responses and disease resistance of catla (Catla catla).

    Science.gov (United States)

    Das, Anushree; Nakhro, Khriezhato; Chowdhury, Supratim; Kamilya, Dibyendu

    2013-11-01

    Effects of dietary administration of Bacillus amyloliquefaciens FPTB16 on systemic and mucosal immunity and disease resistance of catla (Catla catla) against Edwardsiella tarda infection were evaluated in the present study. The laboratory maintained B. amyloliquefaciens was used to study antagonistic activity against fish pathogenic bacteria by agar well diffusion assay. Healthy catla were challenged by this bacterium for determination of its safety. For preparation of probiotic supplemented diet, the bacteria were added to the basal diet (control) at three different inclusion levels i.e., 1 × 10(9), 1 × 10(8) and 1 × 10(7) CFU/g diet. Fish (weight 25-30 g) were fed with these diets and various immune parameters and disease resistance study were conducted at 4 weeks and 8 weeks post-feeding. The bacterial antagonism study showed inhibition zone against E. tarda, Aeromonas hydrophila, Vibrio parahaemolyticus and V. harveyi. B. amyloliquefaciens was harmless to catla as neither mortalities nor morbidities were observed after the challenge. Study of different systemic and mucosal immunological parameters viz. superoxide anion production and nitric oxide production, myeloperoxidase content, lysozyme activity and total protein content showed significant enhancement (p < 0.05) in fish fed with 10(8) and 10(9) CFU/g B. amyloliquefaciens at both time points with the highest values observed in case of 10(9) CFU/g. For fish fed with 10(7) CFU/g B. amyloliquefaciens, all the parameters showed significant enhancement (p < 0.05) at both time points except the lysozyme activity of serum at 8 weeks. Diet containing 10(8) and 10(9) CFU/g B. amyloliquefaciens significantly enhanced (p < 0.05) the resistance of catla against bacterial challenge at both time points. These results collectively suggest that B. amyloliquefaciens is a potential probiotic species and can be used in aquaculture to improve health status and disease resistance with an optimal dietary supplementation of 10

  11. The dtd gene from Bacillus amyloliquefaciens encodes a putative D-tyrosyl-tRNATyr deacylase and is a selectable marker for Bacillus subtilis.

    Science.gov (United States)

    Geraskina, Natalia V; Butov, Ivan A; Yomantas, Yurgis A V; Stoynova, Nataliya V

    2015-02-01

    Genetically engineered microbes are of high practical importance due to their cost-effective production of valuable metabolites and enzymes, and the search for new selectable markers for genetic manipulation is of particular interest. Here, we revealed that the soil bacterium Bacillus amyloliquefaciens A50 is tolerant to the non-canonical amino acid D-tyrosine (D-Tyr), in contrast to the closely related Bacillus strain B. subtilis 168, which is a widely used "domesticated" laboratory strain. The gene responsible for resistance to D-Tyr was identified. The resistance was associated with the activity of a potential D-tyrosyl-tRNA(Tyr) deacylase. Orthologs of this enzyme are capable of hydrolyzing the ester bond and recycling misacetylated D-aminoacyl-tRNA molecules into free tRNAs and D-amino acids. This gene, yrvI (dtd), is applicable as a convenient, small selectable marker for non-antibiotic resistance selection in experiments aimed at genome editing of D-Tyr-sensitive microorganisms.

  12. Purification and characterization of a new metallo-neutral protease for beer brewing from Bacillus amyloliquefaciens SYB-001.

    Science.gov (United States)

    Wang, Jinjing; Xu, Ailan; Wan, Yansong; Li, Qi

    2013-08-01

    The increased additive amount of adjuncts in the raw materials of Chinese beer requires the usage of protease to release more water-soluble proteins. Here, a metallo-neutral protease suited for brewing industry was purified from Bacillus amyloliquefaciens SYB-001. A 5.6-fold purification of the neutral protease was achieved with a 4-step procedure including ammonium sulfate precipitation, ion-exchange, hydrophobic interaction, and gel-filtration chromatography. The molecular mass of the enzyme was estimated to be 36.8 kDa. The protease was active and stable at a wide range of pH from 6.0-10.0 with an optimum at pH 7.0. The highest activity of the purified enzyme was found at 50 °C. The existence of manganese ion would specifically enhance the protease activity. Comparing with other commercial neutral proteases in China, adding the new neutral protease during mashing process would release more amino acids from wort such as aspartic acid, arginine, methione, and histidine, resulting in a better amino acid profile in wort. Moreover, the wort processed with the new neutral protease had a higher α-amino nitrogen concentration, which would ensure a vigorous yeast growth and better flavor. The study of the enzyme could lay a foundation for its industrial application and further research.

  13. Characterization of a Mannose-6-Phosphate Isomerase from Bacillus amyloliquefaciens and Its Application in Fructose-6-Phosphate Production.

    Directory of Open Access Journals (Sweden)

    Sujan Sigdel

    Full Text Available The BaM6PI gene encoding a mannose-6-phosphate isomerase (M6PI, EC 5.3.1.8 was cloned from Bacillus amyloliquefaciens DSM7 and overexpressed in Escherichia coli. The enzyme activity of BaM6PI was optimal at pH and temperature of 7.5 and 70°C, respectively, with a kcat/Km of 13,900 s-1 mM-1 for mannose-6-phosphate (M6P. The purified BaM6PI demonstrated the highest catalytic efficiency of all characterized M6PIs. Although M6PIs have been characterized from several other sources, BaM6PI is distinguished from other M6PIs by its wide pH range and high catalytic efficiency for M6P. The binding orientation of the substrate M6P in the active site of BaM6PI shed light on the molecular basis of its unusually high activity. BaM6PI showed 97% substrate conversion from M6P to fructose-6-phosphate demonstrating the potential for using BaM6PI in industrial applications.

  14. Suppression of bacterial wilt of tomato by bioorganic fertilizer made from the antibacterial compound producing strain Bacillus amyloliquefaciens HR62.

    Science.gov (United States)

    Huang, Jianfeng; Wei, Zhong; Tan, Shiyong; Mei, Xinlan; Shen, Qirong; Xu, Yangchun

    2014-11-05

    Ralstonia solanacearum (Smith) is an important soil-borne pathogen worldwide. We investigated the effects of a new bioorganic fertilizer, BIO62, which was made from organic fertilizer and antagonist Bacillus amyloliquefaciens HR62, on the control of bacterial wilt of tomato in greenhouse condition. The results showed that the application of BIO62 significantly decreased disease incidence by 65% and strongly reduced R. solanacearum populations both in the rhizosphere soil (8.04 log cfu g(-1) dry soil) and crown sections (5.63 log cfu g(-1) fresh plant section) at 28 days after pathogen challenge. Antibacterial compounds produced by HR62 were purified by silica gel, Sephadex LH-20, and HPLC and then identified using HPLC/electrospray ionization mass spectrometry analysis. Macrolactin A and 7-O-malonyl macrolactin A (molecular weights of 402 and 488 Da, respectively), along with surfactin B (molecular weights of 994, 1008, 1022, and 1036 Da), were observed to inhibit the growth of R. solanacearum.

  15. A Novel Protein Elicitor (PeBA1) from Bacillus amyloliquefaciens NC6 Induces Systemic Resistance in Tobacco.

    Science.gov (United States)

    Wang, Ningbo; Liu, Mengjie; Guo, Lihua; Yang, Xiufen; Qiu, Dewen

    2016-01-01

    Here we reported a novel protein elicitor from Bacillus amyloliquefaciens NC6 induced systemic resistance (ISR) in tobacco. The purification was executed by ion-exchange chromatography, native-page extraction and HPLC, and the amino acid sequence was identified by mass spectrometry. This recombinant elicitor protein, expressed in Escherichia coli by an E1 expression vector, had good thermal stability, and the elicitor caused a clearly defined hypersensitive response (HR) necrosis in tobacco leaves. It could also trigger early defence events, including generation of reactive oxygen species (H2O2 and O2 (-)) and phenolic-compound accumulation. Quantitative real-time PCR (Q-RT-PCR) results indicated that several plant defence genes, including the salicylic acid (SA)-responsive PR1a, PR1b, PR5, and phenylalanine ammonia lyase (PAL), as well as the jasmonic acid (JA)-responsive PDF1.2 and CORONATINE INSENSITIVE 1 (COI1), were all up-regulated. Moreover, infiltration conferred systemic resistance against a broad spectrum of pathogens, including Tobacco mosaic virus (TMV) and the fungal pathogen Botrytis cinerea.

  16. Tolerance Induction of Temperature and Starvation with Tricalcium Phosphate on Preservation and Sporulation in Bacillus amyloliquefaciens Detected by Flow Cytometry.

    Science.gov (United States)

    Shahrokh Esfahani, Samaneh; Emtiazi, Giti; Shafiei, Rasoul; Ghorbani, Najmeh; Zarkesh Esfahani, Seyed Hamid

    2016-09-01

    The Bacillus species have many applications in the preparation of various enzymes, probiotic, biofertilizer, and biomarkers for which the survival of resting cells and spore formation under different conditions are important. In this study, water and saline along with different mineral substances such as calcium carbonate, calcium phosphate, and silica were used for the detection of survival and preservation of Bacillus amyloliquefaciens. The results showed intensive death of resting cells at 8 °C, but significant survival at 28 °C after one month. However, preservation by minerals significantly decreased the rate of death and induced sporulation at both the temperatures. The resting cells were maintained at room temperature (about 60 % of the initial population survived after a month) in the presence of tricalcium phosphate. The results showed that temperature has more effect on sporulation compare with starvation. The sporulation in normal saline at 28 °C was 70 times more than that at 8 °C; meanwhile, addition of tricalcium phosphate increases sporulation by 90 times. Also, the FTIR data showed the interaction of tricalcium phosphate with spores and resting cells. The discrimination of sporulation from non-sporulation state was performed by nucleic acid staining with thiazole orange and detected by flow cytometry. The flow cytometric studies confirmed that the rates of sporulation in pure water were significantly more at 28 °C. This is the first report on the detection of bacterial spore with thiazole orange by flow cytometry and also on the interaction of tricalcium phosphate with spores by FTIR analyses.

  17. The genetic and acute oral toxicity effect of Bacillus amyloliquefaciens BA-16-8 on mice%Bacillus amyloliquefaciens BA-16-8对小鼠的毒性研究

    Institute of Scientific and Technical Information of China (English)

    付瑞敏; 邢文会; 陈五岭

    2016-01-01

    Bacillus amyloliquefaciens BA-16-8是一株具有高效拮抗Penicillium expansum的生防菌,对苹果采后青霉病具有显著的防治效果.为了解该菌株对动物及人的安全性,通过Ames实验、骨髓微核实验、精子畸形实验及28 d喂养实验等测定了菌株发酵液对小鼠的遗传毒性及急性经口毒性影响.结果表明,菌株BA-16-8菌悬液(1×1O8 cfu/mL)对小鼠无毒,故属安全级别.此外,菌株BA-16-8菌悬液对小鼠无致突变作用.喂养过程中,相对比对照组,实验组小鼠的血常规及生理生化指标虽在实验前期有所差异,但随着处理时间延长,差异逐渐缩小至不显著,此外,实验组小鼠的脏器指数与对照组无显著差异.由此可推断,Bacillusamyloliquefaciens BA-16-8的菌悬液对哺乳动物安全,可用于苹果采摘后的涂膜处理及防腐保鲜.

  18. Effect of Bacillus amyloliquefaciens-based Direct-fed Microbial on Performance, Nutrient Utilization, Intestinal Morphology and Cecal Microflora in Broiler Chickens

    Science.gov (United States)

    Lei, Xinjian; Piao, Xiangshu; Ru, Yingjun; Zhang, Hongyu; Péron, Alexandre; Zhang, Huifang

    2015-01-01

    The present study was conducted to evaluate the effect of the dietary supplementation of Bacillus amyloliquefaciens-based direct-fed microbial (DFM) on growth performance, nutrient utilization, intestinal morphology and cecal microflora in broiler chickens. A total of two hundred and eighty eight 1-d-old Arbor Acres male broilers were randomly allocated to one of four experimental treatments in a completely randomized design. Each treatment was fed to eight replicate cages, with nine birds per cage. Dietary treatments were composed of an antibiotic-free basal diet (control), and the basal diet supplemented with either 15 mg/kg of virginiamycin as antibiotic growth promoter (AGP), 30 mg/kg of Bacillus amyloliquefaciens-based DFM (DFM 30) or 60 mg/kg of Bacillus amyloliquefaciens-based DFM (DFM 60). Experimental diets were fed in two phases: starter (d 1 to 21) and finisher (d 22 to 42). Growth performance, nutrient utilization, morphological parameters of the small intestine and cecal microbial populations were measured at the end of the starter (d 21) and finisher (d 42) phases. During the starter phase, DFM and virginiamycin supplementation improved the feed conversion ratio (FCR; pvirginiamycin and DFM significantly increased the total tract apparent digestibility of crude protein (CP), dry matter (DM) and gross energy during both starter and finisher phases (p<0.05) compared with the control group. On d 21, villus height, crypt depth and villus height to crypt depth ratio of duodenum, jejunum, and ileum were significantly increased for the birds fed with the DFM diets as compared with the control group (p<0.05). The DFM 30, DFM 60, and AGP groups decreased the Escherichia coli population in cecum at d 21 and d 42 compared with control group (p<0.01). In addition, the population of Lactobacillus was increased in DFM 30 and DFM 60 groups as compared with control and AGP groups (p<0.01). It can be concluded that Bacillus amyloliquefaciens-based DFM could be an

  19. Ultra high pressure homogenization (UHPH inactivation of Bacillus amyloliquefaciens spores in phosphate buffered saline (PBS and milk

    Directory of Open Access Journals (Sweden)

    Peng eDong

    2015-07-01

    Full Text Available Ultra high pressure homogenization (UHPH opens up new areas for dynamic high pressure assisted thermal sterilization of liquids. Bacillus amyloliquefaciens spores are resistant to high isostatic pressure and temperature and were suggested as potential surrogate for high pressure thermal sterilization validation. B. amyloliquefaciens spores suspended in PBS buffer (0.01 M, pH 7.0, low fat milk (1.5%, pH 6.7 and whole milk (3.5%, pH 6.7 at initial concentration of ~106 CFU/mL were subjected to UHPH treatments at 200, 300 and 350 MPa with an inlet temperature at ~80 °C. Thermal inactivation kinetics of B. amyloliquefaciens spores in PBS and milk were assessed with thin wall glass capillaries and modeled using mechanistic linear first order and Weibull models. The residence time during UHPH treatments was estimated to determine the contribution of temperature to spore inactivation by UHPH. No sublethal injury was detected after UHPH treatments using sodium chloride as selective component in the nutrient agar medium. The inactivation profiles of spores in PBS buffer and milk were compared and fat provided no clear protective effect for spores against treatments. Treatment at 200 MPa with valve temperatures lower than 125 °C caused no reduction of spores. A reduction of 3.5 log10 CFU/mL of B. amyloliquefaciens spores was achieved by treatment at 350 MPa with a valve temperature higher than 150 °C. The modeled thermal inactivation and observed inactivation during UHPH treatments suggest that temperature could be the main lethal effect driving inactivation.

  20. The impact of the pathogen Rhizoctonia solani and its beneficial counterpart Bacillus amyloliquefaciens on the indigenous lettuce microbiome

    Directory of Open Access Journals (Sweden)

    Armin eErlacher

    2014-04-01

    Full Text Available Lettuce belongs to the most commonly raw eaten food worldwide and its microbiome plays an important role for both human and plant health. Yet, little is known about the impact of potentially occurring pathogens and beneficial inoculants of the indigenous microorganisms associated with lettuce. To address this question we studied the impact of the phytopathogenic fungus Rhizoctonia solani and the biological control agent Bacillus amyloliquefaciens FZB42 on the indigenous rhizosphere and phyllosphere community of greenhouse-grown lettuce at two plant stages. The rhizosphere and phyllosphere gammaproteobacterial microbiomes of lettuce plants showed clear differences in their overall and core microbiome composition as well as in corresponding diversity indices. The rhizosphere was dominated by Xanthomonadaceae (48% and Pseudomonadaceae (37% with Rhodanobacter, Pseudoxanthomonas, Dokdonella, Luteimonas, Steroidobacter, Thermomonas as core inhabitants, while the dominating taxa associated to phyllosphere were Pseudomonadaceae (54%, Moraxellaceae (16% and Enterobacteriaceae (25% with Alkanindiges, Pantoea and a group of Enterobacteriaceae unclassified at genus level. The preferential occurrence of enterics in the phyllosphere was the most significant difference between both habitats. Additional enhancement of enterics on the phyllosphere was observed in bottom rot diseased lettuce plants, while Acinetobacter and Alkanindiges were identified as indicators of healthy plants. Interestingly, the microbial diversity was enhanced by treatment with both the pathogen, and the co-inoculated biological control agent. The highest impact and bacterial diversity was found by Rhizoctonia inoculation, but FZB42 lowered the impact of Rhizoctonia on the microbiome. This study shows that the indigenous microbiome shifts as a consequence to pathogen attack but FZB42 can compensate these effects, which supports their role as biocontrol agent and suggests a novel mode of

  1. Multiple effects of Bacillus amyloliquefaciens volatile compounds: plant growth promotion and growth inhibition of phytopathogens.

    Science.gov (United States)

    Asari, Shashidar; Matzén, Staffan; Petersen, Mikael Agerlin; Bejai, Sarosh; Meijer, Johan

    2016-06-01

    Biotic interactions through volatile organic compounds (VOC) are frequent in nature. This investigation aimed to study the role of ITALIC! BacillusVOC for the beneficial effects on plants observed as improved growth and pathogen control. Four ITALIC! Bacillus amyloliquefacienssubsp. ITALIC! plantarumstrains were screened for VOC effects on ITALIC! Arabidopsis thalianaCol-0 seedlings and ITALIC! Brassicafungal phytopathogens. VOC from all four ITALIC! Bacillusstrains could promote growth of ITALIC! Arabidopsisplants resulting in increased shoot biomass but the effects were dependent on the growth medium. Dose response studies with UCMB5113 on MS agar with or without root exudates showed significant plant growth promotion even at low levels of bacteria. ITALIC! BacillusVOC antagonized growth of several fungal pathogens ITALIC! in vitro However, the plant growth promotion efficacy and fungal inhibition potency varied among the ITALIC! Bacillusstrains. VOC inhibition of several phytopathogens indicated efficient microbial antagonism supporting high rhizosphere competence of the ITALIC! Bacillusstrains. GC-MS analysis identified several VOC structures where the profiles differed depending on the growth medium. The ability of ITALIC! Bacillusstrains to produce both volatile and soluble compounds for plant growth promotion and disease biocontrol provides examples of rhizosphere microbes as an important ecosystem service with high potential to support sustainable crop production.

  2. Influence of Different Lignocellulose Sources on Endo-1,4-β-Glucanase Gene Expression and Enzymatic Activity of Bacillus amyloliquefaciens B31C

    Directory of Open Access Journals (Sweden)

    Rosangela Di Pasqua

    2014-01-01

    Full Text Available Conversion of cellulose into fermentable sugars for ethanol production is currently performed by enzymatic hydrolysis catalyzed by cellulases. The cellulases are produced by a wide variety of microorganisms, playing a major role in the recycling of biomass. The endo-1,4-β-glucanase (CelB31C from Bacillus amyloliquefaciens B31C, isolated from compost and previously selected on the basis of highest cellulase activity levels among Bacillus isolated, was characterized as being a potential candidate for a biocatalyst in lignocellulose conversion for second-generation bioethanol production. The aim of this work was to evaluate the changes in production of enzymatic activity of the endo-1,4-β-glucanase (CelB31C and the expression of its gene (bglC using a carboxymethylcellulase activity assay and qRT-PCR analysis, respectively, during growth of B. amyloliquefaciens B31C on different cellulose sources: carboxymethylcellulose (CMC, pure cellulose from Arundo donax, pretreated Arundo donax biomass (Chemtex, and microcrystalline cellulose (Avicel. The results showed that both the expression of bglC gene and the enzymatic activity production are related to the type of cellulose source. The strain showed a high enzymatic activity on lignocellulosic biomass and on microcrystalline cellulose. Furthermore, the highest gene expression occurred during the exponential phase of growth, except in the presence of Avicel.

  3. [The role of the promoter and leader sequences of extracellular ribonuclease from Bacillus amyloliquefaciens in regulation of enzyme biosynthesis].

    Science.gov (United States)

    Znamenskaia, L V; Kaiumova, A R; Kharitonova, M A; Vershinina, V I

    2005-01-01

    It is shown that in the medium rich with inorganic phosphate there is a stimulation of biosynthesis of ribonuclease from B. amyloliquefaciens (barnase) by actinomycin D, while biosynthesis of ribonucleases from B. intermedius (binase) and B. pumilus (KNase Bpu) in these conditions was suppressed. Features of biosynthesis of binase and RNase Bpu, directed by the barnase promoter, and also expression of chimeric gene of RNase Bpu with leader peptide of barnase were investigated. It was established that stimulation of synthesis of extracellular ribonuclease from B. amyloliquefaciens in the presence of actinomycin D was defined by structure of leader sequences.

  4. Production of fibrinolytic enzyme from Bacillus amyloliquefaciens by fermentation of chickpeas, with the evaluation of the anticoagulant and antioxidant properties of chickpeas.

    Science.gov (United States)

    Wei, Xuetuan; Luo, Mingfang; Xu, Lin; Zhang, Yewei; Lin, Xing; Kong, Peng; Liu, Huizhou

    2011-04-27

    To develop safe and cheap thrombolytic agents, a fibrinolytic enzyme productive strain of LSSE-62 was isolated from Chinese soybean paste. This strain was identified as Bacillus amyloliquefaciens by 16S rDNA sequence analysis. Nucleotide and amino acid sequence analysis showed that this fibrinolytic enzyme was identical to subtilisin DJ-4. Chickpeas were used as the substrate for fibrinolytic enzyme production from B. amyloliquefaciens in solid-state fermentation. Under the optimized conditions (34 °C and 50% initial moisture content), the fibrinolytic activity of fermented chickpeas reached 39.28 fibrin degradation units (FU)/g. Additionally, the fermented chickpeas showed anticoagulant activity, and the purified anticoagulant component showed higher anticoagulant activity than heparin sodium. After fermentation, the total phenolic and total flavonoid contents increased by 222 and 71%, respectively, and then the antioxidant activities were improved significantly. This study provided a novel method for the preparation of multifunctional food of chickpeas or raw materials for the preparation of functional food additives and potential drugs.

  5. Statistical optimization of culture conditions for milk-clotting enzyme production by bacillus amyloliquefaciens using wheat bran-an agro-industry waste.

    Science.gov (United States)

    Zhang, Weibing; He, Xiaoling; Liu, Hongna; Guo, Huiyuan; Ren, Fazheng; Wen, Pengcheng

    2013-12-01

    In order to improve the production of the milk-clotting enzyme under submerged fermentation, two statistical methods were applied to optimize the culture conditions of Bacillus amyloliquefaciens D4 using wheat bran as nutrient source. First, initial pH, agitation speed, and fermentation time were shown to have significant effects on D4 enzyme production using the Plackett-Burman experimental design. Subsequently, optimal conditions were obtained using the Box-Behnken method, which were as follows: initial pH 7.57, agitation speed 241 rpm, fermentation time 53.3 h. Under these conditions, the milk-clotting enzyme production was remarkably enhanced. The milk-clotting enzyme activity reached 1996.9 SU/mL, which was 2.92-fold higher than that of the initial culture conditions, showing that the Plackett-Burman design and Box-Behnken response surface method are effective to optimize culture conditions. The research can provide a reference for full utilization of wheat bran and the production of milk-clotting enzyme by B. amyloliquefaciens D4 under submerged fermentation.

  6. The peptide toxin amylosin of Bacillus amyloliquefaciens from moisture-damaged buildings is immunotoxic, induces potassium efflux from mammalian cells, and has antimicrobial activity.

    Science.gov (United States)

    Rasimus-Sahari, Stiina; Teplova, Vera V; Andersson, Maria A; Mikkola, Raimo; Kankkunen, Päivi; Matikainen, Sampsa; Gahmberg, Carl G; Andersson, Leif C; Salkinoja-Salonen, Mirja

    2015-04-01

    Amylosin, a heat-stable channel-forming non-ribosomally synthesized peptide toxin produced by strains of Bacillus amyloliquefaciens isolated from moisture-damaged buildings, is shown in this paper to have immunotoxic and cytotoxic effects on human cells as well as antagonistic effects on microbes. Human macrophages exposed to 50 ng of amylosin ml(-1) secreted high levels of cytokines interleukin-1β (IL-1β) and IL-18 within 2 h, indicating activation of the NLRP3 inflammasome, an integral part of the innate immune system. At the same exposure level, expression of IL-1β and IL-18 mRNA increased. Amylosin caused dose-dependent potassium ion efflux from all tested mammalian cells (human monocytes and keratinocytes and porcine sperm cells) at 1 to 2 μM exposure. Amylosin also inhibited the motility of porcine sperm cells and depolarized the mitochondria of human keratinocytes. Amylosin may thus trigger the activation of the NLRP3 inflammasome and subsequently cytokine release by causing potassium efflux from exposed cells. The results of this study indicate that exposure to amylosin activates the innate immune system, which could offer an explanation for the inflammatory symptoms experienced by occupants of moisture-damaged buildings. In addition, the amylosin-producing B. amyloliquefaciens inhibited the growth of both prokaryotic and eukaryotic indoor microbes, and purified amylosin also had an antimicrobial effect. These antimicrobial effects could make amylosin producers dominant and therefore significant causal agents of health problems in some moisture-damaged sites.

  7. Microbial interactions for enhancement of α-amylase production by Bacillus amyloliquefaciens 04BBA15 and Lactobacillus fermentum 04BBA19

    Directory of Open Access Journals (Sweden)

    Bertrand Tatsinkou Fossi

    2014-12-01

    Full Text Available Interactions occurring between Saccharomyces cerevisiae and two thermostable α-amylase producing strains (Bacillus amyloliquefaciens 04BBA15 and Lactobacillus fermentum 04BBA19 were analyzed by comparing their growth patterns obtained in isolation with those obtained in mixture. The difference between the patterns was assessed using analysis of variance (ANOVA in order to measure how much the growth of an organism was affected by other. The results showed two types of interactions in mixed culture; commensalism between S. cerevisiae and B. amyloliquefaciens 04BBA15 and mutualism between S. cerevisiae and L. fermentum 04BBA19. In mixed culture, the α-amylase production increased significantly compared to that observed in monoculture (P < 0.05. Response surface optimization of fermentation parameters in mixed cultures (initial yeast to bacteria ratio 1.125, temperature 33.5 °C, pH 5.5 resulted in about 1.8 fold higher enzyme production than that observed in the unoptimized fermentation.

  8. Functional expression of a novel alkaline-adapted lipase of Bacillus amyloliquefaciens from stinky tofu brine and development of immobilized enzyme for biodiesel production.

    Science.gov (United States)

    Cai, Xianghai; Ma, Jing; Wei, Dong-Zhi; Lin, Jin-Ping; Wei, Wei

    2014-11-01

    Using enrichment procedures, a lipolytic strain was isolated from a stinky tofu brine and was identified as Bacillus amyloliquefaciens (named B. amyloliquefaciens Nsic-8) by morphological, physiological, biochemical tests and 16S rDNA sequence analysis. Meanwhile, the key enzyme gene (named lip BA) involved in ester metabolism was obtained from Nsic-8 with the assistance of homology analysis. The novel gene has an open reading frame of 645 bp, and encodes a 214-amino-acid lipase (LipBA). The deduced amino acid sequence shows the highest identity with the lipase from B. amyloliquefaciens IT-45 (NCBI database) and belongs to the family of triacylglycerol lipase (EC 3.1.1.3). The lipase gene was expressed in Escherichia coli BL21(DE3) using plasmid pET-28a. The enzyme activity and specific activity were 250 ± 16 U/ml and 1750 ± 153 U/mg, respectively. The optimum pH and temperature of the recombinant enzyme were 9.0 and 40 °C respectively. LipBA showed much higher stability under alkaline conditions and was stable at pH 7.0-11.0. The Km and Vmax values of purified LipBA using 4-nitrophenyl palmitate as the substrate were 1.04 ± 0.06 mM and 119.05 ± 7.16 μmol/(ml min), respectively. After purification, recombinant lipase was immobilized with the optimal conditions (immobilization time 3 h at 30 °C, with 92 % enzyme recovery) and the immobilized enzyme was applied in biodiesel production. This is the first report of the lipase activity and lipase gene obtained from B. amyloliquefaciens (including wild strain and recombinant strain) and the recombinant LipBA with the detailed enzymatic properties. Also the preliminary study of the transesterification shows the potential value in biodiesel production applications.

  9. Improved production of 2,3-butanediol in Bacillus amyloliquefaciens by over-expression of glyceraldehyde-3-phosphate dehydrogenase and 2,3-butanediol dehydrogenase.

    Directory of Open Access Journals (Sweden)

    Taowei Yang

    Full Text Available BACKGROUND: Previously, a safe strain, Bacillus amyloliquefaciens B10-127 was identified as an excellent candidate for industrial-scale microbial fermentation of 2,3-butanediol (2,3-BD. However, B. amyloliquefaciens fermentation yields large quantities of acetoin, lactate and succinate as by-products, and the 2,3-BD yield remains prohibitively low for commercial production. METHODOLOGY/PRINCIPAL FINDINGS: In the 2,3-butanediol metabolic pathway, glyceraldehyde-3-phosphate dehydrogenase (GAPDH catalyzes the conversion of 3-phosphate glyceraldehyde to 1,3-bisphosphoglycerate, with concomitant reduction of NAD(+ to NADH. In the same pathway, 2,3-BD dehydrogenase (BDH catalyzes the conversion of acetoin to 2,3-BD with concomitant oxidation of NADH to NAD(+. In this study, to improve 2,3-BD production, we first over-produced NAD(+-dependent GAPDH and NADH-dependent BDH in B. amyloliquefaciens. Excess GAPDH reduced the fermentation time, increased the 2,3-BD yield by 12.7%, and decreased the acetoin titer by 44.3%. However, the process also enhanced lactate and succinate production. Excess BDH increased the 2,3-BD yield by 16.6% while decreasing acetoin, lactate and succinate production, but prolonged the fermentation time. When BDH and GAPDH were co-overproduced in B. amyloliquefaciens, the fermentation time was reduced. Furthermore, in the NADH-dependent pathways, the molar yield of 2,3-BD was increased by 22.7%, while those of acetoin, lactate and succinate were reduced by 80.8%, 33.3% and 39.5%, relative to the parent strain. In fed-batch fermentations, the 2,3-BD concentration was maximized at 132.9 g/l after 45 h, with a productivity of 2.95 g/l·h. CONCLUSIONS/SIGNIFICANCE: Co-overexpression of bdh and gapA genes proved an effective method for enhancing 2,3-BD production and inhibiting the accumulation of unwanted by-products (acetoin, lactate and succinate. To our knowledge, we have attained the highest 2,3-BD fermentation yield thus far

  10. Improving the quality of Laminaria japonica-based diet for Apostichopus japonicus through degradation of its algin content with Bacillus amyloliquefaciens WB1.

    Science.gov (United States)

    Wang, Xitao; Wang, Lili; Che, Jian; Li, Zhen; Zhang, Jiancheng; Li, Xiaoyu; Hu, Weiqing; Xu, Yongping

    2015-07-01

    Laminaria japonica feedstuff is used as a substitute for Sargassum thunbergii in the small-scale culturing of Apostichopus japonicus (sea cucumber) because of its abundant sources and low price in China. However, the difficulty associated with the degradation of algin by A. japonicus and, hence, its utilization have limited the practical value of L. japonica feedstuff in sea cucumber farming. In this study, A. japonicus individuals were fed with L. japonica feedstuff pretreated, via fermentation with the algin-degrading bacterial strain, Bacillus amyloliquefaciens WB1, and their growth performance, nonspecific immune responses, and resistance against Vibrio infection were then determined over a 60-day period. Growth performance of these individuals was similar to those fed with a commercial feedstuff made from S. thunbergii (mean weight gain of 5.79 versus 5.69 g on day 60), but was significantly (P < 0.05) increased compared to those fed with untreated L. japonica feedstuff (mean weight gain of 1.31 g). At the same time, they also showed significantly higher levels of amylase, protease, and alginate lyase activities than the other groups. These individuals and those fed with the commercial feedstuff or heat-inactivated but B. amyloliquefaciens WB1-treated L. japonicas feedstuff showed enhanced levels of activities for the immune enzymes nitric oxide synthase, lysozyme, peroxidase, and acid phosphatase, compared to those fed with nontreated L. japonica feedstuff. Furthermore, A. japonicus individuals fed with B. amyloliquefaciens WB1-treated L. japonica feedstuff exhibited greater resistance to disease following Vibrio splendidus challenge, as shown by the much lower cumulative symptom (10 %) compared to the rest, which showed as much as 73 % in the case of individuals fed with the untreated L. japonica feedstuff. Analysis of their intestinal tract revealed a much lower number of total Vibrio sp. These results demonstrated that L. japonica in which the algin

  11. Plant growth-promoting endophytic bacteria versus pathogenic infections: an example of Bacillus amyloliquefaciens RWL-1 and Fusarium oxysporum f. sp. lycopersici in tomato

    Science.gov (United States)

    Shahzad, Raheem; Khan, Abdul Latif; Bilal, Saqib

    2017-01-01

    Fungal pathogenic attacks are one of the major threats to the growth and productivity of crop plants. Currently, instead of synthetic fungicides, the use of plant growth-promoting bacterial endophytes has been considered intriguingly eco-friendly in nature. Here, we aimed to investigate the in vitro and in vivo antagonistic approach by using seed-borne endophytic Bacillus amyloliquefaciens RWL-1 against pathogenic Fusarium oxysporum f. sp. lycopersici. The results revealed significant suppression of pathogenic fungal growth by Bacillus amyloliquefaciens in vitro. Further to this, we inoculated tomato plants with RWL-1 and F. oxysporum f. sp. lycopersici in the root zone. The results showed that the growth attributes and biomass were significantly enhanced by endophytic-inoculation during disease incidence as compared to F. oxysporum f. sp. lycopersici infected plants. Under pathogenic infection, the RWL-1-applied plants showed increased amino acid metabolism of cell wall related (e.g., aspartic acid, glutamic acid, serine (Ser), and proline (Pro)) as compared to diseased plants. In case of endogenous phytohormones, significantly lower amount of jasmonic acid (JA) and higher amount of salicylic acid (SA) contents was recorded in RWL-1-treated diseased plants. The phytohormones regulation in disease incidences might be correlated with the ability of RWL-1 to produce organic acids (e.g., succinic acid, acetic acid, propionic acid, and citric acid) during the inoculation and infection of tomato plants. The current findings suggest that RWL-1 inoculation promoted and rescued plant growth by modulating defense hormones and regulating amino acids. This suggests that bacterial endophytes could be used for possible control of F. oxysporum f. sp. lycopersici in an eco-friendly way. PMID:28321368

  12. Plant growth-promoting endophytic bacteria versus pathogenic infections: an example of Bacillus amyloliquefaciens RWL-1 and Fusarium oxysporum f. sp. lycopersici in tomato

    Directory of Open Access Journals (Sweden)

    Raheem Shahzad

    2017-03-01

    Full Text Available Fungal pathogenic attacks are one of the major threats to the growth and productivity of crop plants. Currently, instead of synthetic fungicides, the use of plant growth-promoting bacterial endophytes has been considered intriguingly eco-friendly in nature. Here, we aimed to investigate the in vitro and in vivo antagonistic approach by using seed-borne endophytic Bacillus amyloliquefaciens RWL-1 against pathogenic Fusarium oxysporum f. sp. lycopersici. The results revealed significant suppression of pathogenic fungal growth by Bacillus amyloliquefaciens in vitro. Further to this, we inoculated tomato plants with RWL-1 and F. oxysporum f. sp. lycopersici in the root zone. The results showed that the growth attributes and biomass were significantly enhanced by endophytic-inoculation during disease incidence as compared to F. oxysporum f. sp. lycopersici infected plants. Under pathogenic infection, the RWL-1-applied plants showed increased amino acid metabolism of cell wall related (e.g., aspartic acid, glutamic acid, serine (Ser, and proline (Pro as compared to diseased plants. In case of endogenous phytohormones, significantly lower amount of jasmonic acid (JA and higher amount of salicylic acid (SA contents was recorded in RWL-1-treated diseased plants. The phytohormones regulation in disease incidences might be correlated with the ability of RWL-1 to produce organic acids (e.g., succinic acid, acetic acid, propionic acid, and citric acid during the inoculation and infection of tomato plants. The current findings suggest that RWL-1 inoculation promoted and rescued plant growth by modulating defense hormones and regulating amino acids. This suggests that bacterial endophytes could be used for possible control of F. oxysporum f. sp. lycopersici in an eco-friendly way.

  13. Inhibitory efficacy of cyclo(L-leucyl-L-prolyl) from mangrove rhizosphere bacterium-Bacillus amyloliquefaciens (MMS-50) toward cariogenic properties of Streptococcus mutans.

    Science.gov (United States)

    Gowrishankar, Shanmugaraj; Poornima, Balan; Pandian, Shunmugiah Karutha

    2014-05-01

    Since Streptococcus mutans is the principal etiologic agent causing dental caries, by encompassing an array of unique virulence traits, emerging treatment strategies that specifically target the virulence of this pathogen may be promising as alternative approaches compared to conventional antibiotic therapy. In this perspective, we investigated chloroform extract of cell-free culture supernatant from mangrove rhizosphere bacterium Bacillus amyloliquefaciens (MMS-50) in terms of anticariogenic properties of S. mutans, without suppressing its viability. Crude chloroform extract of MMS-50 was subjected to column and high performance liquid chromatographic techniques to obtain the active fraction (AF), and MMS-50 AF was used for all further assays. GC-MS and FT-IR were carried out to identify the major components present in MMS-50 AF. Comparative gene expression analysis of some biofilm-forming and virulence genes (vicR, comDE, gtfC, and gbpB) was done by real-time PCR. Cyclo(L-leucyl-L-prolyl) was found to be the chief compound in MMS-50 AF responsible for bioactivity. The minimum and maximum inhibitory concentrations of MMS-50 AF against S. mutans were found to be 100 and 250 μg/mL, respectively. Anti-virulence assays performed using below-sub-MIC levels of MMS-50 AF (30 μg/mL) resulted in significant reduction in adherence (68%), acid production, acid tolerance, glucan synthesis (32%), biofilm formation (53.5%) and cell surface hydrophobicity, all devoid of affecting its viability. The micrographs of CLSM and SEM further confirmed the antibiofilm and anti-virulence efficacies of MMS-50 AF. Expression data showed significant reduction in expression of all studied virulence genes. Thus, the current study unveils the anticariogenic potential of cyclo(L-leucyl-L-prolyl) from B. amyloliquefaciens, as well as its suitability as a novel and alternative anticariogenic agent against dental caries.

  14. Characterization and evaluation of Bacillus amyloliquefaciens strain WF02 regarding its biocontrol activities and genetic responses against bacterial wilt in two different resistant tomato cultivars.

    Science.gov (United States)

    Huang, Chu-Ning; Lin, Chan-Pin; Hsieh, Feng-Chia; Lee, Sook-Kuan; Cheng, Kuan-Chen; Liu, Chi-Te

    2016-11-01

    Bacillus amyloliquefaciens strain WF02, isolated from soil collected at Wufeng Mountain, Taiwan, has siderophore-producing ability and in vitro antagonistic activity against bacterial wilt pathogen. To determine the impact of plant genotype on biocontrol effectiveness, we treated soil with this strain before infecting susceptible (L390) and moderately resistant (Micro-Tom) tomato cultivars with Ralstonia solanacearum strain Pss4. We also compared the efficacy of this strain with that of commercial Bacillus subtilis strain Y1336. Strain WF02 provided longer lasting protection against R. solanacearum than did strain Y1336 and controlled the development of wilt in both cultivars. To elucidate the genetic responses in these plants under WF02 treatment, we analyzed the temporal expression of defense-related genes in leaves. The salicylic acid pathway-related genes phenylalanine ammonia-lyase and pathogenesis-related protein 1a were up-regulated in both cultivars, whereas expression of the jasmonic acid pathway-related gene lipoxygenase was only elevated in the susceptible tomato cultivar (L390). These results suggest that WF02 can provide protection against bacterial wilt in tomato cultivars with different levels of disease resistance via direct and indirect modes of action.

  15. Limited impact of abiotic stress on surfactin production in planta and on disease resistance induced by Bacillus amyloliquefaciens S499 in tomato and bean.

    Science.gov (United States)

    Pertot, Ilaria; Puopolo, Gerardo; Hosni, Taha; Pedrotti, Lorenzo; Jourdan, Emmanuel; Ongena, Marc

    2013-12-01

    Understanding how temperature and water stress affect protocooperation between plants and beneficial rhizobacteria may enhance the efficacy of biocontrol agents in reducing plant diseases. However, little is known about the impact of these factors on biocontrol mechanisms and effectiveness, especially when provided by beneficial Bacillus spp. This work aimed to evaluate the influence of low/high temperature combined with a normal and reduced water regime on the interaction between Bacillus amyloliquefaciens strain S499 and plants, resulting in the induction of systemic resistance (ISR). A reduction in ISR level was observed when plants were subjected to stress before bacterization; however, root treatment with S499 prior to stress exposure attenuated this negative effect. Colonization of S499 during exposure to temperature/water stress allowed the three crops to conserve their overall ability to mount defense lines to a similar degree at all the temperatures tested. Further investigation revealed that relative production of surfactin by S499 was clearly enhanced at low temperature, making it possible to counter-balance the negative effect on traits associated with rhizosphere fitness (colonization, motility, and biofilm formation) observed in vitro in cold conditions. This work thus represents a first step in deciphering the effect of high/low temperatures and/or drought on key plant-microorganism interactions culminating in ISR.

  16. Comparison of the wild-type alpha-amylase and its variant enzymes in Bacillus amyloliquefaciens in activity and thermal stability, and insights into engineering the thermal stability of bacillus alpha-amylase.

    Science.gov (United States)

    Lee, Seunjae; Mouri, Yoshiki; Minoda, Masashi; Oneda, Hiroshi; Inouye, Kuniyo

    2006-06-01

    The starch hydrolysis activity and thermal stability of Bacillus amyloliquefaciens alpha-amylase (wild-type enzyme or WT) and its variant enzymes, designated as M77, M111, and 21B, were compared. All have an optimal pH at around 6, as well as almost the same reaction rates and Km and kcat values. The optimal temperature in the absence of Ca2+ ions is 60 degrees C for WT and M77 and 40 degrees C for M111 and 21B. Those of M111 and 21B rose to 50-60 degrees C upon the addition of 5 mM CaCl2, while those of WT and M77 did not change. The dissociation constants Kd for Ca2+ to WT and M77 are much lower than those of M111 and 21B. Asp233 in WT is replaced by Asn in M111 and 21B, while it is retained in M77, suggesting that Asp233 is involved in the thermal stability of the enzyme through Ca2+ ion binding. These findings provide insight into engineering the thermal stability of B. amyloliquefaciens alpha-amylase, which would be useful for its applications in the baking industry and in glucose manufacturing.

  17. Effects of the dietary supplementation of mixed probiotic spores of Bacillus amyloliquefaciens 54A, and Bacillus pumilus 47B on growth, innate immunity and stress responses of striped catfish (Pangasianodon hypophthalmus).

    Science.gov (United States)

    Truong Thy, Ho Thi; Tri, Nguyen Nhu; Quy, Ong Moc; Fotedar, Ravi; Kannika, Korntip; Unajak, Sasimanas; Areechon, Nontawith

    2017-01-01

    The study used the mixed probiotics of Bacillus amyloliquefaciens 54A and B. pumilus 47B isolated from striped catfish (Pangasianodon hypophthalmus) intestine aiming to stimulate growth performance, innate immunity, stress tolerance of striped catfish. The average weight gain (AWG), specific growth rate (SGR), and feed conversion ratio (FCR) were analyzed after fish were fed the mixture of probiotics (B. amyloliquefaciens 54A and B. pumilus 47B) at concentrations of 1 × 10(8), 3 × 10(8), and 5 × 10(8) CFU g(-1) feed for 90 days. Immunity parameters, survival rate of fish challenged with Edwardsiella ictaluri and ammonia tolerance were also investigated. The amounts of B. amyloliquefaciens and B. pumilus were counted and identified by specific primer pairs of Ba1-F/Ba1-R, and 16-F/Bpu-R to confirm the presence of probiotics in fish intestine. The AWG (476.6 ± 7.81 g fish(-1)) of fish fed probiotics at 5 × 10(8) CFU g(-1) was significant higher than the control (390 ± 25.7 g fish(-1)) after 90 days of feeding, but there was no significant (P > 0.05) effect of probiotics on FCR and SGR. Fish fed diet containing probiotics at 5 × 10(8) CFU g(-1) also expressed resistance to E. ictaluri infection and higher immune parameters such as phagocytic activity, respiratory bursts, and lysozyme activity than the control. Stress response with ammonia showed significantly lower mortality rate (25%, 20% and 27%) of fish fed probiotics at all three levels of 1, 3 and 5 × 10(8) CFU g(-1) than the fish fed control diet (75%). The study also demonstrated that the probiotics survived in the intestine of striped catfish after 90 days of feeding. Therefore, the dietary supplementation of a mixture of B. amyloliquefaciens and B. pumilus at 5 × 10(8) CFU g(-1) can be used to improve the health and growth rate of striped catfish.

  18. AÇÃO ANTILISTERIAL DO EXTRATO BRUTO DE Bacillus Amyloliquefaciens EM DIFERENTES CONCENTRAÇÕES DE PROTEÍNA, pH E SAL

    Directory of Open Access Journals (Sweden)

    M. A. PEREIRA

    2008-09-01

    Full Text Available

    O elevado índice de morbidade em função da contaminação dos alimentos tem aumentado a necessidade de metodologias alternativas para conservação dos mesmos. Nesse sentido, essa pesquisa teve por objetivo: (1 otimizar a ação antilisterial do extrato bruto produzido por Bacillus amyloliquefaciens em diferentes concentrações proteicas, pH e sal; (2 avaliar a ação do extrato bruto otimizado em ostras artificialmente contaminadas com Listeria monocytogenes. A ação do extrato bruto em diferentes concentrações de proteína (0,0; 5,0; 40; 80 µg/mL sobre o inóculo de 106 UFC.mL-1 de Listeria monocytogenes foi verificada em caldo TSB-YE previamente ajustado para pH 4,0 e 8,0 e concentrações de NaCl de 0; 2,5 e 4,5 % p/v. Os ensaios foram realizados à temperatura de 25ºC em estufa DBO. Para determinar a recuperação microbiana, realizaram-se contagens de Listeria monocytogenes a cada 4 h, por até 50 h. Dos tratamentos testados, a combinação de 80 g/mL de proteína do extrato bruto, pH 4,0 e 4,5 % de NaCl mostrou melhor performance quanto a atividade antimicrobiana, chegando a uma redução de até 5 ciclos logarítmicos de Listeria monocytogenes. Quando testada a ação do tratamento conjunto de 80 g/mL de extrato bruto, pH 4,0 e 4,5 % de NaCl sobre carne de ostra, obteve-se uma redução no número de Listeria monocytogenes de aproximadamente 3 ciclos logarítmicos, (3,0x106 para 1,5x103 UFC.mL-1, após 24 h de incubação a 25ºC. Esses resultados indicam a possível utilização do antimicrobiano produzido por Bacillus amyloliquefaciens como conservador de alimentos.

  19. Advance in Research on Biological Control of Postharvest Diseases of Fruits and Vegetables by Bacillus amyloliquefaciens%解淀粉芽孢杆菌防治果蔬采后病害研究进展

    Institute of Scientific and Technical Information of China (English)

    洪鹏; 安国栋; 胡美英; 王会冬

    2013-01-01

    综述了解淀粉芽孢杆菌在果蔬采后病害防治上的应用及研究进展,归纳了解淀粉芽孢杆菌的筛选途径和研究现状,总结了解淀粉芽孢杆菌的控病作用机制和提高解淀粉芽孢杆菌作用效果的方法;指出解淀粉芽孢杆菌用于果蔬保鲜存在的诸如防效不稳定和商业化困难等问题,并提出与低量化学药剂混用和运用分子生物学手段研究抑菌机理等建议;最后,认为以解淀粉芽孢杆菌为主要成分的生物农药具有广阔的应用前景.%The research advance of using Bacillus amyloliquefaciens to postharvest diseases of fruits and vegetables was reviewed, including the screening methods antagonists and situation of B.amyloliquefaciens. The mechanisms of the antagonist B. amyloliquefaciens against postharvest diseases of fruits and vegetables and improved ways of antagonistic microorganism were summarized. Moreover, the paper also presented the application of B. amyloliquefaciens agent and the existing problems such as instability of control effect and difficulty of commercialization, combined use of pesticides and using methods in molecular biology on bacteriostasis mechanism are propounded. Finally, the pesticides of B. amyloliquefaciens were considered as wide development prospect in the future.

  20. Effects of Bacillus amyloliquefaciens FZB42 on lettuce growth and health under pathogen pressure and its impact on the rhizosphere bacterial community.

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    Soumitra Paul Chowdhury

    Full Text Available The soil-borne pathogen Rhizoctonia solani is responsible for crop losses on a wide range of important crops worldwide. The lack of effective control strategies and the increasing demand for organically grown food has stimulated research on biological control. The aim of the present study was to evaluate the rhizosphere competence of the commercially available inoculant Bacillus amyloliquefaciens FZB42 on lettuce growth and health together with its impact on the indigenous rhizosphere bacterial community in field and pot experiments. Results of both experiments demonstrated that FZB42 is able to effectively colonize the rhizosphere (7.45 to 6.61 Log 10 CFU g(-1 root dry mass within the growth period of lettuce in the field. The disease severity (DS of bottom rot on lettuce was significantly reduced from severe symptoms with DS category 5 to slight symptom expression with DS category 3 on average through treatment of young plants with FZB42 before and after planting. The 16S rRNA gene based fingerprinting method terminal restriction fragment length polymorphism (T-RFLP showed that the treatment with FZB42 did not have a major impact on the indigenous rhizosphere bacterial community. However, the bacterial community showed a clear temporal shift. The results also indicated that the pathogen R. solani AG1-IB affects the rhizosphere microbial community after inoculation. Thus, we revealed that the inoculant FZB42 could establish itself successfully in the rhizosphere without showing any durable effect on the rhizosphere bacterial community.

  1. Study of Biological Degradation of New Poly(Ether-Urethane-Urea)s Containing Cyclopeptide Moiety and PEG by Bacillus amyloliquefaciens Isolated from Soil.

    Science.gov (United States)

    Rafiemanzelat, Fatemeh; Jafari, Mahboobeh; Emtiazi, Giti

    2015-10-01

    The present work for the first time investigates the effect of Bacillus amyloliquefaciens, M3, on a new poly(ether-urethane-urea) (PEUU). PEUU was synthesized via reaction of 4,4'-methylenebis(4-phenylisocyanate) (MDI), L-leucine anhydride cyclopeptide (LACP) as a degradable monomer and polyethylene glycol with molecular weight of 1000 (PEG-1000). Biodegradation of the synthesized PEUU as the only source for carbon and nitrogen for M3 was studied. The co-metabolism biodegradation of the polymer by this organism was also investigated by adding mannitol or nutrient broth to the basic media. Biodegradation of the synthesized polymer was followed by SEM, FT-IR, TGA, and XRD techniques. It was shown that incubation of PEUU with M3 resulted in a 30-44 % reduction in polymer's weight after 1 month. This study indicates that the chemical structure of PEUU significantly changes after exposure to M3 due to hydrolytic and enzymatic degradation of polymer chains. The results of this work supports the idea that this poly(ether-urethane) is used as a sole carbon source by M3 and this bacterium has a good capability for degradation of poly(ether-urethane)s.

  2. Response of tomato wilt pathogen Ralstonia solanacearum to the volatile organic compounds produced by a biocontrol strain Bacillus amyloliquefaciens SQR-9.

    Science.gov (United States)

    Raza, Waseem; Ling, Ning; Yang, Liudong; Huang, Qiwei; Shen, Qirong

    2016-04-22

    It is important to study the response of plant pathogens to the antibiosis traits of biocontrol microbes to design the efficient biocontrol strategies. In this study, we evaluated the role of volatile organic compounds (VOCs) produced by a biocontrol strain Bacillus amyloliquefaciens SQR-9 on the growth and virulence traits of tomato wilt pathogen Ralstonia solanacearum (RS). The VOCs of SQR-9 significantly inhibited the growth of RS on agar medium and in soil. In addition, the VOCs significantly inhibited the motility traits, production of antioxidant enzymes and exopolysaccharides, biofilm formation and tomato root colonization by RS. The strain SQR-9 produced 22 VOCs, but only nine VOCs showed 1-11% antibacterial activity against RS in their corresponding amounts; however, the consortium of all VOCs showed 70% growth inhibition of RS. The proteomics analysis showed that the VOCs of SQR-9 downregulated RS proteins related to the antioxidant activity, virulence, carbohydrate and amino acid metabolism, protein folding and translation, while the proteins involved in the ABC transporter system, amino acid synthesis, detoxification of aldehydes and ketones, methylation, protein translation and folding, and energy transfer were upregulated. This study describes the significance and effectiveness of VOCs produced by a biocontrol strain against tomato wilt pathogen.

  3. Cotton fertilization using PGPR Bacillus amyloliquefaciens FZB42 and compost: Impact on insect density and cotton yield in North Benin, West Africa

    Directory of Open Access Journals (Sweden)

    Thiery B. Charles Alavo

    2015-12-01

    Full Text Available This work has compared the effects of the biofertilizer Bacillus amyloliquefaciens FZB42 with that of compost for cotton production. The population dynamics of pests and predators have been studied in order to check whether the use of both fertilization materials can contribute to pest management in cotton. Three treatments were considered: (i dressing of seeds in rhizobacteria suspension, (ii introduction of rhizobacterial suspension directly in the pocket, same time with the seeds, and (iii fertilization with compost. The study was carried out in northwest Benin (West Africa. Results showed that cotton aphids, Aphis gossypii, pink bollworm, Pectinophora gossypiella, leaf roller, Sylepta derogata, and cotton bugs, Dysdercus sp. are the major insect pests encountered in the experimental plots. Cotton bollworm, Helicoverpa armigera, was present but under the economic threshold. The coccinellid predators, Cheilomenes spp., occurred in the experimental plots and almost suppressed aphid proliferation. Other natural enemies such as chrysopids and ant species also occurred and probably contributed to maintain the cotton bollworm under the economic threshold. The treatment with seeds dressed with the rhizobacteria suspension yielded 39% more cotton compared to the compost fertilization. The use of both fertilization materials without application of chemicals can contribute to pest management in cotton.

  4. Plant growth-promoting rhizobacteria strain Bacillus amyloliquefaciens NJN-6-enriched bio-organic fertilizer suppressed Fusarium wilt and promoted the growth of banana plants.

    Science.gov (United States)

    Yuan, Jun; Ruan, Yunze; Wang, Beibei; Zhang, Jian; Waseem, Raza; Huang, Qiwei; Shen, Qirong

    2013-04-24

    Bacillus amyloliquefaciens strain NJN-6 is an important plant growth-promoting rhizobacteria (PGPR) which can produce secondary metabolites antagonistic to several soil-borne pathogens. In this study, the ability of a bio-organic fertilizer (BIO) containing NJN-6 strain to promote the growth and suppress Fusarium wilt of banana plants was evaluated in a pot experiment. The results showed that the application of BIO significantly decreased the incidence of Fusarium wilt and promoted the growth of banana plants compared to that for the organic fertilizer (OF). To determine the beneficial mechanism of the strain, the colonization of NJN-6 strain on banana roots was evaluated using scanning electron microscopy (SEM). The plant growth-promoting hormones indole-3-acetic acid (IAA) and gibberellin A3 (GA3), along with antifungal lipopeptides iturin A, were detected when the NJN-6 strain was incubated in both Landy medium with additional l-tryptophan and in root exudates of banana plants. In addition, some antifungal volatile organic compounds and iturin A were also detected in BIO. In summary, strain NJN-6 could colonize the roots of banana plants after the application of BIO and produced active compounds which were beneficial for the growth of banana plants.

  5. Comparison of the kinetics of lipopeptide production by Bacillus amyloliquefaciens XZ-173 in solid-state fermentation under isothermal and non-isothermal conditions.

    Science.gov (United States)

    Zhu, Zhen; Sun, Lifei; Huang, Xiaolei; Ran, Wei; Shen, Qirong

    2014-05-01

    This study aimed to compare the kinetics of lipopeptide production in solid-state fermentation (SSF) under isothermal and non-isothermal conditions. Models based on the logistic, modified Gompertz and Luedeking-Piret-like equations were developed to describe the time course of fermentation under different conditions. The experiments were conducted in 250 mL flasks and a 50 L fermenter. The results showed that the non-isothermal process had higher levels of product formation rate and substrate utilization rate compared to the isothermal process. The part of substrate carbon to meet microbial maintenance-energy, biomass and lipopeptides formation requirements got increased using the non-isothermal technique. In addition, fermenter conditions positively influenced the lipopeptides formation rate with significantly higher levels of substrate for the microbial growth and product formation, though the product productivity and biomass both decreased as compared to flask. This is the first report that investigates the effects of temperature changing on the kinetics of lipopeptide production by Bacillus amyloliquefaciens strain under SSF condition using soybean flour and rice straw as major substrates in flask and in fermenter.

  6. Effect of organic fertilizers prepared from organic waste materials on the production of antibacterial volatile organic compounds by two biocontrol Bacillus amyloliquefaciens strains.

    Science.gov (United States)

    Raza, Waseem; Wei, Zhong; Ling, Ning; Huang, Qiwei; Shen, Qirong

    2016-06-10

    Three organic fertilizers made of different animal and plant waste materials (BOFs) were evaluated for their effects on the production of antibacterial volatile organic compounds (VOCs) by two Bacillus amyloliquefaciens strains SQR-9 and T-5 against the tomato wilt pathogen Ralstonia solanacearum (RS). Both strains could produce VOCs that inhibited the growth and virulence traits of RS; however, in the presence of BOFs, the production of antibacterial VOCs was significantly increased. The maximum inhibition of growth and virulence traits of RS by VOCs of T-5 and SQR-9 was determined at 1.5% BOF2 and 2% BOF3, respectively. In case of strain T-5, 2-nonanone, nonanal, xylene, benzothiazole, and butylated hydroxy toluene and in case of strain SQR-9, 2-nonanone, nonanal, xylene and 2-undecanone were the main antibacterial VOCs whose production was increased in the presence of BOFs. The results of this study reveal another significance of using organic fertilizers to improve the antagonistic activity of biocontrol agents against phytopathogens.

  7. Isolation and identification of the antagonistic strain DM-54 of Bacillus amyloliquefacien against Verticillium dahliae, and optimization of antifungal protein producing conditions

    Institute of Scientific and Technical Information of China (English)

    Ying ZHU; Shuna LI; Hongshui YUAN; Xiaojun GUO; Baocheng ZHU

    2009-01-01

    The strains capable of resistance against Verticillium dahliae Kleb were isolated and screened from the soils of cotton fields from several different provinces in China. A strain, coded DM-54, with a rather high antagonistic activity was obtained. Its morphological characteristics, physiological and biochemical properties and a 16 S rDNA sequence of this strain were further studied. The DM-54 strain was finally identified as a kind of Bacillus amyloliquefacien. Through a single factor experiment and an orthogonal experiment, the optimal shaking flask fermentation condition of strain DM-54 was found to be: media composed of 5% dextrin, 3% soy peptone, 0.02% MgSO4 0.01% CaCl2, initial pH 7.0 and 10% inoculum volume, media volume 30/250 (mL/mL), fermentation temperature at 32℃, rotating speed activity was distinguished to be elevated, at about 39.9%. Our research offers an effective means for the massive production of antagonistic proteins.

  8. Plant growth-promoting bacteria Bacillus amyloliquefaciens NBRISN13 modulates gene expression profile of leaf and rhizosphere community in rice during salt stress.

    Science.gov (United States)

    Nautiyal, Chandra Shekhar; Srivastava, Suchi; Chauhan, Puneet Singh; Seem, Karishma; Mishra, Aradhana; Sopory, Sudhir Kumar

    2013-05-01

    Growth and productivity of rice and soil inhabiting microbial population is negatively affected by soil salinity. However, some salt resistant, rhizosphere competent bacteria improve plant health in saline stress. Present study evaluated the effect of salt tolerant Bacillus amyloliquefaciens NBRISN13 (SN13) inoculation on rice plants in hydroponic and soil conditions exposed to salinity. SN13 increased plant growth and salt tolerance (NaCl 200 mM) and expression of at least 14 genes under hydroponic and soil conditions in rice. Among these 14 genes 4 (NADP-Me2, EREBP, SOSI, BADH and SERK1) were up-regulated and 2 (GIG and SAPK4) repressed under salt stress in hydroponic condition. In greenhouse experiment, salt stress resulted in accumulation of MAPK5 and down-regulation of the remaining 13 transcripts was observed. SN13 treatment, with or without salt gave similar expression for all tested genes as compared to control. Salt stress caused changes in the microbial diversity of the rice rhizosphere and stimulated population of betaine-, sucrose-, trehalose-, and glutamine-utilizing bacteria in salt-treated rice rhizosphere (SN13 + salt). The observations imply that SN13 confers salt tolerance in rice by modulating differential transcription in a set of at least 14 genes. Stimulation of osmoprotectant utilizing microbial population as a mechanism of inducing salt tolerance in rice is reported for the first time in this study to the best of our knowledge.

  9. Biosynthesis of titanium dioxide nanoparticles using Bacillus amyloliquefaciens culture and enhancement of its photocatalytic activity for the degradation of a sulfonated textile dye Reactive Red 31.

    Science.gov (United States)

    Khan, Razia; Fulekar, M H

    2016-08-01

    The present study aims at exploiting Bacillus amyloliquefaciens for the biosynthesis of titanium dioxide nanoparticles and also investigates role of bacterial enzymes in the biosynthesis of titanium dioxide nanoparticles. Bacterial synthesized as well as metal doped titanium dioxide nanoparticles were characterized by X-ray diffractometer (XRD), Fourier transform infrared spectroscopy (FTIR), Transmission electron microscopy (TEM), Energy dispersive X-ray spectroscopy (EDAX). Amylase activity (43.37IU) in culture supernatant evinced a potential involvement of extracellular enzyme in TiO2 nanoparticle biosynthesis. Crystallite size of bio-synthesized nanoparticles was found to be in the range of 15.23-87.6nm. FTIR spectroscopy and native-PAGE (Polyacrylamide Gel Electrophoresis) clearly indicated involvement of alpha amylase in biosynthesis of TiO2 nanoparticles and in their stabilization. TEM micrographs of the synthesized titanium dioxide nanoparticles revealed the formation of spherical nanoparticles with a size range of 22.11-97.28nm. Photocatalytic degradation of Reactive Red 31 (RR31) dye was carried out using bio-synthesized TiO2 nanoparticles under UV radiation. Photocatalytic activity of synthesized nanoparticles was enhanced by Ag, La, Zn and Pt doping. Platinum doped TiO2 showed highest potential (90.98%) in RR31 degradation as compared to undoped (75.83%).

  10. Clarification of the Antagonistic Effect of the Lipopeptides Produced by Bacillus amyloliquefaciens BPD1 against Pyricularia oryzae via In Situ MALDI-TOF IMS Analysis

    Directory of Open Access Journals (Sweden)

    Jen-Hung Liao

    2016-12-01

    Full Text Available This study tried to clarify the antagonistic effect of the lipopeptides secreted by Bacillus amyloliquefaciens strain BPD1 (Ba-BPD1 against Pyricularia oryzae Cavara (PO. To determine the major antifungal lipopeptides effective against PO, single and dual cultures were carried out in solid-state media. The matrix-assisted laser desorption/ionization–time of flight imaging mass spectrometry (MALDI-TOF IMS was used to identify the most effective lipopeptide in situ. Meanwhile, the morphology of pathogen fungi treated with lipopeptides was observed via the SEM. Of the three lipopeptide families, surfactin, iturin, and fengycin, the last was identified as the most effective for inhibiting mycelium growth and conidial germination of PO. The conidia and hyphae of fengycin-treated PO were shown to become deformed and tumorous under exposure. This study provides insights into the antagonistic effect of Ba-BPD1 against fungal phytopathogens. Such insights are helpful in the development of reagents for biological control applications.

  11. Purification and characterization of a naringinase from a newly isolated strain of Bacillus amyloliquefaciens 11568 suitable for the transformation of flavonoids.

    Science.gov (United States)

    Zhu, Yunping; Jia, Huiyong; Xi, Menglu; Xu, Liya; Wu, Shaoming; Li, Xiuting

    2017-01-01

    An intracellular naringinase from Bacillus amyloliquefaciens 11568 isolated from soil was purified, identified, and characterized. The sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis of the purified enzyme gave a single protein band corresponding to a molecular mass of 32kDa. The optimum pH and temperature for naringinase and its α-l-rhamnosidase and β-d-glucosidase activities were pH 7.5 and 45°C, respectively. The enzymes were stable below 45°C between pH 3.5 and 8.5. The Km and the Vmax of the isolated naringinase were 0.95mmol/L and 3847.3mmol/(L·min), respectively. The isolated naringinase was capable of hydrolyzing naringin, neohesperidin, and other glycosides. Additionally, a concentration of 4U/mL of the enzyme in citrus juice was sufficient to remove the naringin and alleviate the bitterness of the juice. These results provide an in-depth insight into the structure of the naringinase and the hydrolysis of naringin and other flavonoids.

  12. Biocontrol traits and antagonistic potential of Bacillus amyloliquefaciens strain NJZJSB3 against Sclerotinia sclerotiorum, a causal agent of canola stem rot.

    Science.gov (United States)

    Wu, Yuncheng; Yuan, Jun; Raza, Waseem; Shen, Qirong; Huang, Qiwei

    2014-10-01

    Bacillus amyloliquefaciens strain NJZJSB3 has shown antagonism of several phytopathogens in vitro, especially Sclerotinia sclerotiorum. Both the broth culture and cell suspension of strain NJZJSB3 could completely protect the detached leaves of canola (Brassica napus) from S. sclerotiorum infection. In pot experiments, the application of strain NJZJSB3 cell suspension (10(8) CFU/ml) decreased the disease incidence by 83.3%, a result similar to commercially available fungicide (Dimetachlone). In order to investigate the potential biocontrol mechanisms of strain NJZJSB3, the nonvolatile antifungal compounds it produces were identified as iturin homologs using HPLC-ESI-MS. Antifungal volatile organic compounds were identified by gas chromatography-mass spectrometry. The detected volatiles toluene, phenol, and benzothiazole showed antifungal effects against S. sclerotiorum in chemical control experiments. Strain NJZJSB3 also produced biofilm, siderophores and cell-wall-degrading enzymes (protease and β-1,3-glucanase). These results suggest that strain NJZJSB3 can be a tremendous potential agent for the biological control of sclerotinia stem rot.

  13. Induced systemic resistance responses in perennial ryegrass against Magnaporthe oryzae elicited by semi-purified surfactin lipopeptides and live cells of Bacillus amyloliquefaciens.

    Science.gov (United States)

    Rahman, Alamgir; Uddin, Wakar; Wenner, Nancy G

    2015-08-01

    The suppressive ability of several strains of cyclic lipopeptide-producing Bacillus rhizobacteria to grey leaf spot disease caused by Magnaporthe oryzae has been documented previously; however, the underlying mechanism(s) involved in the induced systemic resistance (ISR) activity in perennial ryegrass (Lolium perenne L.) remains unknown. Root-drench application of solid-phase extraction (SPE)-enriched surfactin and live cells of mutant Bacillus amyloliquefaciens strain FZB42-AK3 (produces surfactin, but not bacillomycin D and fengycin) significantly reduced disease incidence and severity on perennial ryegrass. The application of the treatments revealed a pronounced multilayered ISR defence response activation via timely and enhanced accumulation of hydrogen peroxide (H2O2), elevated cell wall/apoplastic peroxidase activity, and deposition of callose and phenolic/polyphenolic compounds underneath the fungal appressoria in naïve leaves, which was significantly more intense in treated plants than in mock-treated controls. Moreover, a hypersensitive response (HR)-type reaction and enhanced expression of LpPrx (Prx, peroxidase), LpOXO4 (OXO, oxalate oxidase), LpPAL (PAL, phenylalanine ammonia lyase), LpLOXa (LOX, lipoxygenase), LpTHb (putative defensin) and LpDEFa (DEFa, putative defensin) in perennial ryegrass were associated with SPE-enriched surfactin and live AK3 cell treatments, acting as a second layer of defence when pre-invasive defence responses failed. The results indicate that ISR activity following surfactin perception may sensitize H2O2 -mediated defence responses, thereby providing perennial ryegrass with enhanced protection against M. oryzae.

  14. Role of the salt bridge between Arg176 and Glu126 in the thermal stability of the Bacillus amyloliquefaciens α-amylase (BAA).

    Science.gov (United States)

    Zonouzi, Roseata; Khajeh, Khosro; Monajjemi, Majid; Ghaemi, Naser

    2013-01-01

    In the Bacillus amyloliquefaciens α-amylase (BAA), the loop (residues 176-185; region I) that is the part of the calcium-binding site (CaI, II) has two more amino acid residues than the α-amylase from Bacillus licheniformis (BLA). Arg176 in this region makes an ionic interaction with Glu126 from region II (residues 118-130), but this interaction is lost in BLA owing to substitution of R176Q and E126V. The goal of the present work was to quantitatively estimate the effect of ionic interaction on the overall stability of the enzyme. To clarify the functional and structural significance of the corresponding salt bridge, Glu126 was deleted (ΔE126) and converted to Val (E126V), Asp (E126D), and Lys (E126K) by site-directed mutagenesis. Kinetic constants, thermodynamic parameters, and structural changes were examined for the wild-type and mutated forms using UV-visible, atomic absoption, and fluorescence emission spectroscopies. Wild type exhibited higher k(cat) and K(m) but lower catalytic efficiency than the mutant enzymes. A decreased thermostability and an increased flexibility were also found in all of the mutant enzymes when compared with the wild type. Additionally, the calcium content of the wild type was more than ΔE126. Thus, it may be suggested that ionic interaction could decrease the mobility of the discussed region, prevent the diffusion of cations, and improve the thermostability of the whole enzyme. Based on these observations, the contribution of loop destabilization may be compensated by the formation of a salt bridge that has been used as an evolutionary mechanism or structural adaptation by the mesophilic enzyme.

  15. Optimizing Fermentation Condition for Bacillus amyloliquefaciens HF-01%解淀粉芽孢杆菌HF-01发酵条件优化

    Institute of Scientific and Technical Information of China (English)

    洪鹏; 安国栋; 胡美英; 耿鹏; 桑松

    2013-01-01

    In order to investigate best condition for liquid fermentation of Bacillus amyloliquefaciens HF-01 and increase the antagonistic substance productivity of strain HF−01, the single factor experiments and orthogonal experiments were adopted to optimize the liquid fermentation medium and fermentation conditions. The optimum medium was 3.0%glucose, 0.5%yeast extract powder, 0.3%NaCl and 0.1%MgSO4. The optimal fermentation conditions were initial pH 6.0-6.5, temperature 28℃, fermentation time 48 h, medium capacity 90 mL/250 mL, inoculation rate 6%, and rotate speed 130 r·min−1. Inhibitory activity of strain HF−01 fermentation solution increased 37.3% under the optimum fermentation medium and culture conditions. When optimized filtrate was treated on citrus fruits under 25 ℃ for 4 days, the disease incidence and lesion diameter were 31.7%and 25.9 mm respectively, significantly lower than unoptimized filtrate with 56.7% disease incidence and 48.1 mm lesion diameter.%为探讨解淀粉芽孢杆菌Bacillus amyloliquefaciens HF−01菌株液体发酵条件,提高其活性次级代谢产物的产量,以菌体生物量和发酵液拮抗柑桔绿霉病菌Penicillium digitatum Sacc.活性为指标,采用单因子试验和正交设计方法对菌株的最适发酵培养基成分及发酵条件进行优化。结果表明,菌株HF−01最适发酵培养基为葡萄糖3.0%、酵母提取粉0.5%、氯化钠0.3%、硫酸镁0.1%;最佳发酵培养条件为初始pH值6.0~6.5、培养温度28℃、培养时间48 h、250 mL三角瓶装液量90 mL、接种量体积分数6%、摇床转速130 r·min−1。在最佳发酵培养基和培养条件下,菌株HF−01抑菌能力提高37.3%;25℃条件下,优化后所得发酵滤液处理柑橘果实4 d后,发病率为31.7%,病斑直径为25.9 mm,显著低于优化前所得发酵滤液的发病率56.7%和病斑直径48.1 mm。

  16. Co-expression of a Saccharomyces diastaticus glucoamylase-encoding gene and a Bacillus amyloliquefaciens alpha-amylase-encoding gene in Saccharomyces cerevisiae.

    Science.gov (United States)

    Steyn, A J; Pretorius, I S

    1991-04-01

    A glucoamylase-encoding gene (STA2) from Saccharomyces diastaticus and an alpha-amylase-encoding gene (AMY) from Bacillus amyloliquefaciens were cloned separately into a yeast-integrating shuttle vector (YIp5), generating recombinant plasmids pSP1 and pSP2, respectively. The STA2 and AMY genes were jointly cloned into YIp5, generating plasmid pSP3. Subsequently, the dominant selectable marker APH1, encoding resistance to Geneticin G418 (GtR), was cloned into pSP3, resulting in pSP4. For enhanced expression of GtR, the APH1 gene was fused to the GAL10 promoter and terminated by the URA3 terminator, resulting in pSP5. Plasmid pSP5 was converted to a circular minichromosome (pSP6) by the addition of the ARS1 and CEN4 sequences. Laboratory strains of Saccharomyces cerevisiae transformed with plasmids pSP1 through pSP6, stably produced and secreted glucoamylase and/or alpha-amylase. Brewers' and distillers' yeast transformed with pSP6 were also capable of secreting amylolytic enzymes. Yeast transformants containing pSP1, pSP2 and pSP3 assimilated soluble starch with an efficiency of 69%, 84% and 93%, respectively. The major starch hydrolysis products produced by crude amylolytic enzymes found in the culture broths of the pSP1-, pSP2- and pSP3-containing transformants, were glucose, glucose and maltose (1:1), and glucose and maltose (3:1), respectively. These results confirmed that co-expression of the STA2 and AMY genes synergistically enhanced starch degradation.

  17. Effects of volatile organic compounds produced by Bacillus amyloliquefaciens on the growth and virulence traits of tomato bacterial wilt pathogen Ralstonia solanacearum.

    Science.gov (United States)

    Raza, Waseem; Wang, Jichen; Wu, Yuncheng; Ling, Ning; Wei, Zhong; Huang, Qiwei; Shen, Qirong

    2016-09-01

    The production of volatile organic compounds (VOCs) by microbes is an important characteristic for their selection as biocontrol agents against plant pathogens. In this study, we identified the VOCs produced by the biocontrol strain Bacillus amyloliquefaciens T-5 and evaluated their impact on the growth and virulence traits of tomato bacterial wilt pathogen Ralstonia solanacearum. The results showed that the VOCs of strain T-5 significantly inhibited the growth of R. solanacearum in agar medium and in soil. In addition, VOCs significantly inhibited the motility traits, root colonization, biofilm formation, and production of antioxidant enzymes and exopolysaccharides by R. solanacearum. However, no effect of VOCs on the production of hydrolytic enzymes by R. solanacearum was observed. The strain T-5 produced VOCs, including benzenes, ketones, aldehydes, alkanes, acids, and one furan and naphthalene compound; among those, 13 VOCs showed 1-10 % antibacterial activity against R. solanacearum in their produced amounts by T-5; however, the consortium of all VOCs produced on agar medium, in sterilized soil, and in natural soil showed 75, 62, and 85 % growth inhibition of R. solanacearum, respectively. The real-time PCR analysis further confirmed the results when the expression of different virulence- and metabolism-related genes in R. solanacearum cells was decreased after exposure to the VOCs of strain T-5. The results of this study clearly revealed the significance of VOCs in the control of plant pathogens. This information would help to better comprehend the microbial interactions mediated by VOCs in nature and to develop safer strategies to control plant disease.

  18. Control of postharvest soft rot caused by Erwinia carotovora of vegetables by a strain of Bacillus amyloliquefaciens and its potential modes of action.

    Science.gov (United States)

    Zhao, Yancun; Li, Pengxia; Huang, Kaihong; Wang, Yuning; Hu, Huali; Sun, Ya

    2013-03-01

    Erwinia carotovora subsp. carotovora (Ecc), the causal agent of bacterial soft rot, is one of the destructive pathogens of postharvest vegetables. In this study, a bacterial isolate (BGP20) from the vegetable farm soil showed strong antagonistic activity against Ecc in vitro, and its twofold cell-free culture filtrate showed excellent biocontrol effect in controlling the postharvest bacterial soft rot of potatoes at 25 °C. The anti-Ecc metabolites produced by the isolate BGP20 had a high resistance to high temperature, UV-light and protease K. Based on the colonial morphology, cellular morphology, sporulation, and partial nucleotide sequences of 16S rRNA and gyrB gene, the isolate BGP20 was identified as Bacillus amyloliquefaciens subsp. plantarum. Further in vivo assays showed that the BGP20 cell culture was more effective in controlling the postharvest bacterial soft rot of green peppers and Chinese cabbages than its twofold cell-free culture filtrate. In contrast, the biocontrol effect and safety of the BGP20 cell culture were very poor on potatoes. In the wounds of potatoes treated with both the antagonist BGP20 and the pathogen Ecc, the viable count of Ecc was 31,746 times that of BGP20 at 48 h of incubation at 25 °C. But in the wounds of green peppers, the viable count of BGP20 increased 182.3 times within 48 h, and that of Ecc increased only 51.3 %. In addition, the treatment with both BGP20 and Ecc induced higher activity of phenylalanine ammonia-lyase (PAL) than others in potatoes. But the same treatment did not induce an increase of PAL activity in green peppers. In conclusion, the present study demonstrated that the isolate BGP20 is a promising candidate in biological control of postharvest bacterial soft rot of vegetables, but its main mode of action is different among various vegetables.

  19. 生防解淀粉芽胞杆菌(Bacillus amyloliquefaciens)最新研究进展%The Latest Advances in Bio-Control Bacillus amyloliquefaciens

    Institute of Scientific and Technical Information of China (English)

    李红晓; 张殿朋; 卢彩鸽; 赵洪新

    2016-01-01

    Bacillus amyloliquefaciens is a strain similar to B. subtilis,a beneficial microbe that can produce spore, Gram-positive,and possessing biocontrolling activity. During its metabolism it produces antibiotic substance,a varie-ty of antibiotic preparations or antibiotic extracts with broad antibiotic spectrum,non toxic,non harms,non residues, long effectiveness for a given period of time,and other advantages. It can be widely applied in keeping fruits and vegetables fresh,and in biocontrolling microbial pests during their growth and post-harvest. It is a very ideal biocon-trolling microbe with the most developing value. In this paper the studies,the current application of B. amyloliquefa-ciens were drawn and summarized from aspect of the antibiotic mechanism,the antibiotic gene component,the estab-lishment of genetic engineering strain,the development of resistance products,the controlling against microbial pests,and other aspects,and accordingly to provide references for its large-scale safety application in agricultural bio-engineering.%解淀粉芽胞杆菌(Bacillus amyloliquefaciens)是与枯草芽胞杆菌相似,可产芽胞、革兰阳性(G +)、具有生防活性的益生细菌。其代谢过程中产生的抗菌物质种类多、抗菌谱广,其抗菌制剂或抗菌提取物具有无毒、无害、无残留、抑菌时效长等优点,可广泛应用于果蔬保鲜、果蔬生长期及采后微生物病害的生物防治,是极具开发价值的生防菌。本文从抗菌机理、抗性基因组成、基因工程菌构建、抗性产品开发及对微生物病害防治等几个方面,对解淀粉芽胞杆菌的研究及应用现状进行了归纳和总结,为其在农业生物工程中的规模化安全应用提供参考。

  20. 木薯渣、桉树渣固体发酵Bacillus amyloliquefaciens WJ22研制生物有机肥的配方研究%Solid Fermentation Ingredient of Bacillus amyloliquefaciens WJ22 to Produce Bio-organic Fertilizer by Cassava Residue and Eucalyptus Slag

    Institute of Scientific and Technical Information of China (English)

    王晶晶; 黎张早; 张彦龙; 邓小恳; 黎健才; 阮云泽

    2013-01-01

    A rhizosphere bacteria-Bacillus amyloliquefaciens WJ22 stored in the laboratory was a plant growth-promoting rhizosphere bacterium. In the present study, ripe cow manure compost and rapeseed cake as raw materials, cassava residue and eucalyptus slag as addition materials were chosen from agriculture wastes in Hainan Province to solid ferment strain WJ22 and the bio-organic fertilizer made from this strain was prepared. The results showed that strain WJ22 could grow well in the mixture contain 65%of ripe cow manure compost, 15%of rapeseed cake, 20%of cassava residue, and 20%of eucalyptus slag. The strain number was more than 2×109 cfu/g dry weight at the end of composting process and was far more than the national solid bio-organic fertilizer standard (2×107 cfu/g dry weight). Pot experiment results showed that the bio-organic fertilizer made from WJ22 could efficiently promote the growth of banana.%  Bacillus amyloliquefaciens WJ22为实验室保存的香蕉根际促生功能菌。利用牛粪有机肥和菜籽饼为基本原料,海南当地农业废弃物木薯渣和桉树皮为添加原料,研究该菌株的固体发酵配方工艺,最终获得利用该菌株研制的促生生物有机肥。结果表明,拮抗菌WJ22在菜籽饼含量为15%、木薯渣含量为20%、桉树渣含量为20%的原料混合物中固体发酵效果最佳,菌株数量超过2×109 cfu/(g·干重),远远超过国家固体生物有机肥的标准[2×107 cfu/(g·干重)]。盆栽试验结果表明,该配方研制的生物有机肥能够很好地促进香蕉苗期的生长。

  1. 生防菌解淀粉芽孢杆菌抗菌蛋白的研究进展%Research Advances of Antifungal Proteins Produced by Biocontrol Bacterium,Bacillus amyloliquefaciens

    Institute of Scientific and Technical Information of China (English)

    出晓铭; 林毅雄; 张珅; 严芬; 林河通

    2014-01-01

    Bacillus amyloliquefaciens is a kind of biocontrol bacterium which has great ability against fungi and bacteria,thereby it has high research values and potential for development in biological control of posthar-vest diseases of fruits and vegetables.The separation and purification of antifungal proteins produced by Bacil-lus amyloliquefaciens,the disease resistant mechanisms and the application of biocontrol of antifungal proteins were summarized.The future potential application in biocontrol of postharvest diseases of fruits and vegetables was also discussed.%生防解淀粉芽孢杆菌具有强烈抑制真菌和细菌的能力,在果蔬采后病害防治方面具有巨大的应用潜力。该文对解淀粉芽孢杆菌产生的抗菌蛋白、蛋白的分离纯化、抑菌机理和生防应用等方面进行了综述,并对其在果蔬采后病害防治应用前景进行了展望。

  2. The Optimization of Fermentation Condition in Flask forBacillus amyloliquefaciens LJ1%解淀粉芽孢杆菌LJ1摇瓶发酵条件优化

    Institute of Scientific and Technical Information of China (English)

    李娟; 夏凯丽; 王远宏; 董蕴琪; 郝蕾

    2015-01-01

    Bacillus amyloliquefaciensstrainLJ1 isolated from the soil of Tianjin is biocontrol one with broad inhibition spectrum. This study aims to clarify the inhibition spectrum of strainB. amyloliquefaciens LJ1 and improve the antifungal activity by optimizing the medium composition and fermentation conditions. The confront culture was performed to test the antifungal activity of LJ1 on 14 phytopathogenic fungi. The medium composition and fermentation conditions were optimized by single-factor and orthogonal experiments. Finally, the inhibitory effect of optimized broth was tested by methods of spore germination and pot experiment. The results showed thatB. amyloliquefaciens LJ1 inhibited 11 tested fungal pathogens, i. e. ,Botrytis cinerea, Glomerella cingulata, andValsa ceratosperma. The optimal fermentation conditions were as temperature 30℃, initial pH5.0, rotation speed 200 r/min, and medium volume 50 mL/250 mL. The optimal composition of the medium was 200 g potato, 10 g sucrose, 20 g soybean flour, 1.5 g MgCl2·6H2O, and 1 000 mL distilled water. In conclusion, the inhibition rate ofB. amyloliquefaciens LJ1 to the conidia germination ofB. cinerea reached 99.7%, and the control efficacy of pot experiment was 51.08% under the optimum fermentation medium and culture conditions.%解淀粉芽孢杆菌(Bacillus amyloliquefaciens)LJ1是从天津土壤中分离筛选出的一株具有广谱抑菌效果的生防菌株,该实验旨在明确B. amyloliquefaciens LJ1的抑菌谱并通过优化发酵培养基和发酵条件提升其抑菌效果。通过对峙培养检测菌株LJ1对14种病原真菌的抑制效果;采用单因素试验、正交试验优化发酵培养基和摇瓶发酵条件;最后用孢子萌发法和盆栽试验验证优化后发酵液的抑菌效果。实验结果表明B. amyloliquefaciens LJ1对黄瓜灰霉病菌(Botrytis cinerea)、苹果炭疽病菌(Glomerella cingulata)、苹果腐烂病菌(Valsa ceratosperma)等11种病原真菌

  3. Biological Safety Detection of Antagonistic Bacteria Bacillus Amyloliquefaciens KL-1%生防菌解淀粉芽孢杆菌KL-1的生物安全性检测

    Institute of Scientific and Technical Information of China (English)

    吴雨龙; 贲爱玲; 江海涛; 杨齐; 高晨阳

    2016-01-01

    To detect the biological safety of Bacillus amyloliquefaciens KL-1 , acute oral toxicity-fixed dose proce-dure, chromosomal aberration, bone marrow cell micronucleus and phagocytic function of macrophage tests were carried out in mice. The results showed that there were no significant signs of toxicity and mortality in acute toxicity study in 14 days, and the oral lethal dose of Bacillus amyloliquefaciens KL-1 was more than 2000 mg/kg. The re-sults of chromosomal aberration test, bone marrow cell micronucleus test and macrophage phagocytic function test were all negative. Therefore, it is concluded that Bacillus amyloliquefaciens KL-1 has no toxic and side effects on mammals, and this provides the evidence for the safe use of this strain as a biological pesticide.%为了检测解淀粉芽孢杆菌KL-1菌株的生物安全性,以小鼠为对象,经口急性毒性试验固定剂量法、染色体畸变分析法、骨髓细胞微核分析法和巨噬细胞吞噬功能分析法评价解淀粉芽孢杆菌KL-1对哺乳动物的安全性.结果表明,14 d的观察中,急性毒性试验中各组小鼠未出现明显中毒症状和死亡情况,且解淀粉芽孢杆菌KL-1对小鼠的半数致死量( LD50)超过2000 mg/kg.染色体畸变分析、骨髓细胞微核分析和巨噬细胞吞噬功能分析结果均为阴性.由此可推断解淀粉芽孢杆菌KL-1菌株对哺乳动物安全无毒副作用,为该菌株作为生物农药的安全使用提供依据.

  4. 海洋解淀粉芽孢杆菌GM-1菌株发酵液抗菌谱及稳定性测定%The Inhibitory Spectrum and Stability Determination of Marine Bacillus amyloliquefaciens GM-1 Strain

    Institute of Scientific and Technical Information of China (English)

    葛平华; 马桂珍; 付泓润; 王淑芳; 刘兆普

    2012-01-01

    [目的]研究海洋解淀粉芽孢杆菌(Bacillus amyloliquefaciens)菌株GM-1发酵液的抗菌谱及稳定性.[方法]以10种植物病原菌为供试菌,生长速率法测定GM-1菌株发酵液的抗菌谱;以油菜菌核病菌为指示菌,生长速率法测定发酵液在不同条件下的稳定性.[结果]GM-1菌株发酵液对供试的10种植物病原菌具有较好的抑制作用,抗菌范围较广,其中对葡萄白腐病菌(Coniella diplodiella)和小麦根腐病菌(Bipolaris sorokiniana)的抑菌率均达85%以上;其发酵液的抗菌作用有较好的热稳定性,在光照和紫外线照射下稳定性较好,在pH值6~8的条件下抗菌作用稳定,对蛋白酶不敏感.[结论]GM-1菌株具有广谱抗菌活性和较强的稳定性.%[Aims] Inhibitory spectrum and stability of Marine Bacillus amyloliquefaciens GM-1 strain fermentation broth were studied. [Methods] Growth rate method was used to measure inhibitory spectrum on 10 plant pathogens and to determine stability of B. amyloliquefaciens GM-1 strain on Sclerotinia sclerotiorum. [Results] GM-1 strain had better activity to 10 plant pathogens and its inhibitory rates to Coniella diplodiella and Bipolaris sorokiniana was both more than 85%. It was stable to heat, light and ultraviolet rays. It was steady at pH 6-8 and insensitive to protease. [Conclusions] GM-1 strain has broad antimicrobial spectrum and strong stability.

  5. Antagonistic effects of Bacillus subtilis subsp. subtilis and B. amyloliquefaciens against Macrophomina phaseolina: SEM study of fungal changes and UV-MALDI-TOF MS analysis of their bioactive compounds.

    Science.gov (United States)

    Torres, M J; Brandan, C Pérez; Petroselli, G; Erra-Balsells, R; Audisio, M C

    2016-01-01

    The antifungal effect of Bacillus subtilis subsp. subtilis PGPMori7 and Bacillus amyloliquefaciens PGPBacCA1 was evaluated against Macrophomina phaseolina (Tassi) Goid. Cell suspension (CS), cell-free supernatant (CFS) and the lipopeptide fraction (LF) of PGPMori7 and PGPBacCA1 were screened against three different M. phaseolina strains. CS exhibited the highest inhibitory effect (around 50%) when compared to those of CFS and LF, regardless of the fungal strain studied. The synthesis of lipopeptides was studied by UV-MALDI TOF. Chemical analysis of Bacillus metabolite synthesis revealed that surfactin and iturin were mainly produced in liquid medium. Potential fengycin was also co-produced when both Bacillus were cultivated in solid medium. In co-culture assays, the bacterial colony-fungal mycelium interface at the inhibition zone was evaluated by both scanning electron microscopy (SEM) and UV-MALDI TOF, the former to determine the structural changes on M. phaseolina cells and the latter to identify the main bioactive molecules involved in the inhibitory effect. PGPBacCA1 produced surfactin, iturin and fengycin in the inhibition zone while PGPMori7 only produced these metabolites within its colony and not in the narrow inhibition zone. Interestingly, SEM revealed that PGPBacCA1 induced damage in M. phaseolina sclerotia, generating a fungicidal effect as no growth was observed when normal growth conditions were reestablished. In turn, PGPMori7 inhibited the growth of the Macrophomina mycelium without fungal injury, resulting only in a fungistatic activity. From these results, it was determined that the two bacilli significantly inhibited the growth of an important phytopathogenic fungus by at least two different mechanisms: lipopeptide synthesis and competition among microorganisms.

  6. Collagen-like proteins (ClpA, ClpB, ClpC, and ClpD) are required for biofilm formation and adhesion to plant roots by Bacillus amyloliquefaciens FZB42.

    Science.gov (United States)

    Zhao, Xia; Wang, Yun; Shang, Qianhan; Li, Yuyao; Hao, Haiting; Zhang, Yubao; Guo, Zhihong; Yang, Guo; Xie, Zhongkui; Wang, Ruoyu

    2015-01-01

    The genes of collagen-like proteins (CLPs) have been identified in a broad range of bacteria, including some human pathogens. They are important for biofilm formation and bacterial adhesion to host cells in some human pathogenic bacteria, including several Bacillus spp. strains. Interestingly, some bacterial CLP-encoding genes (clps) have also been found in non-human pathogenic strains such as B. cereus and B. amyloliquefaciens, which are types of plant-growth promoting rhizobacteria (PGPR). In this study, we investigated a putative cluster of clps in B. amyloliquefaciens strain FZB42 and a collagen-related structural motif containing glycine-X-threonine repeats was found in the genes RBAM_007740, RBAM_007750, RBAM_007760, and RBAM_007770. Interestingly, biofilm formation was disrupted when these genes were inactivated separately. Scanning electron microscopy and hydrophobicity value detection were used to assess the bacterial cell shape morphology and cell surface architecture of clps mutant cells. The results showed that the CLPs appeared to have roles in bacterial autoaggregation, as well as adherence to the surface of abiotic materials and the roots of Arabidopsis thaliana. Thus, we suggest that the CLPs located in the outer layer of the bacterial cell (including the cell wall, outer membrane, flagella, or other associated structures) play important roles in biofilm formation and bacteria-plant interactions. This is the first study to analyze the function of a collagen-like motif-containing protein in a PGPR bacterium. Knocking out each clp gene produced distinctive morphological phenotypes, which demonstrated that each product may play specific roles in biofilm formation. Our in silico analysis suggested that these four tandemly ranked genes might not belong to an operon, but further studies are required at the molecular level to test this hypothesis. These results provide insights into the functions of clps during interactions between bacteria and plants.

  7. Establishment of pneumonia model induced by bacillus amyloliquefaciens in BALB/c Mice%解淀粉芽孢杆菌致BALB/c小鼠肺炎模型的建立

    Institute of Scientific and Technical Information of China (English)

    黄虎翔; 张万明

    2015-01-01

    目的 探讨解淀粉芽孢杆菌培养液是否导致BALB/e小鼠肺炎.方法 72只SPF级雌性BALB/c小鼠随机分为空白对照组、实验组和免疫抑制组,每组分为3小组,每小组8只,共72只.实验组、免疫抑制组接种同浓度解淀粉芽孢杆菌菌悬液,空白对照组接种50 μl 0.9%氯化钠.接种后第1、3、7天分批处死动物,观察其体征、肺脏肉眼改变、肺脏指数、肺组织病理、核转录因子κB(NF-κB) p65免疫组织化学、外周血象、BALF中白细胞总数、中性粒细胞百分比、血压、血气分析及肺功能改变.结果 免疫抑制组、实验组的肺脏肉眼改变、肺脏指数、肺组织病理、NF-κB p65免疫组织化学、外周血象、BALF中白细胞总数、中性粒细胞百分比、血压、血气分析及肺功能改变与空白对照组比较差异均有统计学意义(P <0.05或<0.01).结论 用解淀粉芽孢杆菌建立了BALB/c小鼠肺炎动物模型.%Objective To detect whether the Bacillus amyloliquefaciens induces BALB/c mice pneumonia.Methods A total of 72 BALB/c mices were randomly divided into three groups:control group (n =8),experimental group (n =8) and immunocompromised group (n =8).Mices in the experimental group and the immunocompromised group were intratracheally injected with suspension of Bacillus amyloliquefaciens at the same concentration.Mices in the control group were intratracheaily injected with 50μl saline.On the 1,3,7 day after injection,mices of each group were killed to observe the animal signs, living lung function,histopathology, pulmonary index, nuclear factor κB (NF-κB) p65, peripheral blood, hemameba the and proportion of neutrophil in bronchoalveolar, blood pressure, blood gas and pulmonary function changes.Results The above changes of the experimental group and immunosuppression group were significantly higher than those in the control (P < 0.05 or < 0.01).Conclusions Bacillus amyloliquefacien may bring about pneumonia

  8. Safety Evaluation of Bacillus amyloliquefaciens Microcapsules Used for Aquaculture%水产养殖用解淀粉芽孢杆菌微胶囊的安全性评价

    Institute of Scientific and Technical Information of China (English)

    曹海鹏; 卫若鹏; 何珊; 吕利群

    2012-01-01

    Objective: The present study was to evaluate the safety of Bacillus amyloliquefaciens microcapsules used for aquaculture. Methods; According to Chemicals桝lga growth inhibition test (GB/T21805-2008), Water quality桪etermination of the acute toxicity of substance to Daphnia ( Daphnia magna straus) (GB/T13266-91), Water quality桪etermination of the acute toxicity of substance to freshwater fish ( Brachydanio rerio Hamilton-Buchanan) ( GB/T13267-91) and Clinical experiment technical practice for fishery drugs, the growth inhibition of the B. amyloliquefaciens microcapsule on Chlorella sp. and its acute toxicity to Daphnia, zebra fish and grass carps were observed, and its influence on main physicochemical factors of aquaculture water was also assayed. Results: The growth of Chlorella sp. was promoted with B. amyloliquefaciens microcapsules at the final concentrations of 0. 2 ~2 000mg/L, its IC50 to Chlorella sp. was 2 000mg/L, and its LD50 to Daphnia, zebra fish and grass carps were all ~2 000mg/L (or mg/kg body weight). In addition, in the period of 14 days after the input of the B. amyloliquefaciens microcapsule into the farming water at 0. 2 ~2 000mg/L, the contents of the ammonia and sulfide as weE as the pII values were gradually reduced, only the nitrite nitrogen concentration first rose slightly and followed by a slow decrease, and the changes of the physiochemical factors related negatively to the concentration of the B. amyloliquefaciens microcapsules. Conclusion; The B. amyloliquefaciens microcapsule was actually nontoxic, its effects on the ammonia, nitrite nitrogen, sulfide and pH in the fish faming water were under the control of their safe concentrations to aquatic animals, such as the goby fry, Pelteobagrusfulvidraco, Esox lucius, Procamharus clarkia. The present study provided important scientific basis on the safe use of B. amyloliquefaciens microcapsules in aquaculture.%目的:评价水产养殖用解淀粉芽孢杆菌微胶囊的

  9. Isolation of anteiso-C17, iso-C17, iso-C16, and iso-C15 bacillomycin D from Bacillus amyloliquefaciens SD-32 and their antifungal activities against plant pathogens.

    Science.gov (United States)

    Tanaka, Keijitsu; Ishihara, Atsushi; Nakajima, Hiromitsu

    2014-02-19

    Two new cyclic lipopeptides (3 and 4) were isolated from the culture filtrate of Bacillus amyloliquefaciens strain SD-32, together with two known metabolites, iso-C15 and iso-C16 bacillomycin D (1 and 2). Spectroscopic and chemical analyses identified the structures of the new compounds 3 and 4 as anteiso-C17 bacillomycin D, cyclic (l-Asn-d-Tyr-d-Asn-l-Pro-l-Glu-d-Ser-l-Thr-3-amino-14-methylhexadecanoic acid) and iso-C17 bacillomycin D, cyclic (l-Asn-d-Tyr-d-Asn-l-Pro-l-Glu-d-Ser-l-Thr-3-amino-15-methylhexadecanoic acid), respectively. The absolute configuration of C-3 in the β-amino fatty acid was determined to be R on the basis of the CD spectrum of its dinitrophenyl-p-methoxyaniline derivative. The activities of compounds 1-4 were evaluated against 13 plant pathogens: the activities of anteiso- and iso-C17 bacillomycin D (3 and 4) were almost the same and stronger than those of iso-C15 and iso-C16 bacillomycin D (1 and 2); iso-C15 bacillomycin D (1) was weakest. Compounds 2-4 inhibited the growth of all fungi tested; however, Pythium aphanidermatum was not inhibited at all by any of the compounds. Furthermore, compounds 1-4 at concentrations of 80, 40, 30, and 30 μM, respectively, inhibited completely the Botrytis cinerea infection in cucumber leaf.

  10. 解淀粉芽胞杆菌关键酶基因过表达对鸟苷积累的影响%Effects of overexpression of key enzyme genes on guanosine accumulation in Bacillus amyloliquefaciens

    Institute of Scientific and Technical Information of China (English)

    何逵夫; 马跃超; 杜姗姗; 谢希贤; 徐庆阳; 陈宁

    2012-01-01

    [目的]研究鸟苷生物合成途径中的3个关键酶编码基因(prs,purF,guaB)过表达对解淀粉芽胞杆菌(Bacillus amyloliquefaciens)发酵生产鸟苷的影响.[方法]利用穿梭表达载体PBE43,构建含有prs、purF和guaB基因的单独表达载体和prs、purF基因的串联表达载体,将它们分别转入鸟苷生产菌B.amyloliquefaciens TA208后,通过实时定量PCR测定各工程菌株内相关基因的转录水平;通过酶活检测分析关键酶基因扩增对肌苷酸脱氢酶活性的影响;通过摇瓶发酵实验考察工程菌株与对照菌株的生长、耗糖和鸟苷积累情况.[结果]转录分析结果表明prs、purF和guaB基因过表达的同时都伴随着自身转录水平的显著上调.与此同时,prs和PurF基因单独表达均轻微下调了嘌呤操纵子的转录水平,但是guaB基因的过表达并不影响嘌呤操纵子和Prs基因的转录.酶活分析结果表明prs和purF基因扩增并不影响肌苷酸脱氢酶的活性,guaB基因的扩增使其活性提高了126%.摇瓶发酵实验发现prs和purF基因的单独过表达均未促进宿主菌合成鸟苷,而含guaB基因过表达载体的工程菌鸟苷产量较出发菌株提高20.7%.将prs和purF基因串联表达后,鸟苷产量提高14.4%,糖苷转化率增加6.8%.[结论]过表达guaB基因能够大幅提高鸟苷产量,而prs和purF基因只有实现协同表达才能对宿主菌积累鸟苷产生积极影响,为通过代谢工程技术提高鸟苷产量奠定了研究基础.%[Objective] To study the effects of overexpression of key enzyme genes (prs, purF and guaB) on guanosine production in Bacillus amyloliquefaciens TA208. [ Methods] The prs, purF, guaB and prs-purF genes were inserted into constructed expression plasmid PBE43. All these constructed plasmids were electroporated into B. amyloliquefaciens TA208. The transcriptional level of various genes in the resulting strains was tested by real-time quantitative PCR. The activity

  11. Resistance to antimicrobials and acid and bile tolerance of Bacillus spp isolated from Bikalga, fermented seeds of Hibiscus sabdariffa

    DEFF Research Database (Denmark)

    Compaore, Clarisse S.; Jensen, Lars Bogø; Diawara, Brehima

    2013-01-01

    In the aim of selecting starter cultures, thirteen species of Bacillus spp. including six Bacillus subtilis ssp. subtilis, four Bacillus licheniformis and three Bacillus amyloliquefaciens ssp. plantarum isolated from traditional Bikalga were investigated. The study included, for all isolates, gen...

  12. Caracterización bioquímica de AmiJ33, una amilasa de Bacillus amyloliquefaciens aislada de suelos cultivados con caña de azúcar en la región del Papaloapan

    Directory of Open Access Journals (Sweden)

    J. J. Montor-Antonio

    2014-01-01

    Full Text Available La amilasa (E.C. 3.2.1.1 de Bacillus amyloliquefaciens JJC33M (AmiJ33 fue producida por fermentación sumergida. Se probó el efecto de peptona, extracto de levadura, Ca+2 y glicina en la producción de AmiJ33. El extracto de levadura y Ca+2 tuvieron un efecto positivo sobre la síntesis de AmiJ33. La enzima fue recuperada mediante precipitación a saturación al 60% con (NH42SO4. El peso molecular aproximado de la enzima purificada fue de 50 kDa. Así mismo, se evaluó el efecto del pH y la temperatura sobre la actividad enzimática, concluyendo que los valores más altos de actividad se observaron a pH 6.0 y 80°C, respectivamente. En condiciones ligeramente ácidas (pH 4.0 y 5.0, AmiJ33 mantuvo el 72% de su actividad. AmiJ33 fue estable por 3 h a 40°C, y por 30 min a 45 y 50°C, conservando el 88 y 82% de actividad residual. A 60°C, la actividad disminuyó 40%. La actividad de AmiJ33 se incrementó 50.27% con b- mercaptoetanol, no fue inhibida por EDTA y se inhibió totalmente con SDS.

  13. Condition optimization for antagonizing of Bacillus amyloliquefaciens F1 against Aspergillus flavus and its mycostatic properties%解淀粉芽孢杆菌F1对黄曲霉的拮抗条件优化及其抑霉特性研究

    Institute of Scientific and Technical Information of China (English)

    饶胜其; 陈素雅; 魏永峰; 高璐; 尹永祺; 杨振泉; 方维明

    2015-01-01

    研究室前期从市售黑胡椒表面分离鉴定了1株解淀粉芽孢杆菌Bacillus amyloliquefaciens F1(保藏号:CGMCC No.10942),研究发现该菌株能产生抗真菌蛋白,对黄曲霉具有较强的抑制作用.该研究拟在前期基础上,通过单因素试验优化B.amyloliquefaciens F1的培养条件及培养基组分,进一步增强其对黄曲霉的拮抗效果,并考察B.amyloliquefaciens F1发酵液对黄曲霉生长及产毒的影响.结果表明,B.amyloliquefaciens F1拮抗黄曲霉的适宜培养条件:为温度32℃,初始pH值5.5,培养时间48 h;适宜发酵培养基为在营养肉汤培养基中添加0.4%蔗糖、0.2%柠檬酸铵和0.02% KNO3.优化后F1发酵上清液对黄曲霉的抑菌率达到75.2%,比优化前提高了60.1%.进一步的研究发现,B.amyloliquefaciens F1的发酵上清超滤液(30 k~100 ku)能够抑制黄曲霉孢子萌发、延缓菌丝发育,在蛋白质量浓度为0.1 mg/mL时能完全抑制黄曲霉毒素的产生.

  14. Cloning and Expression of the Neutral Protease Gene from Bacillus Amyloliquefaciens%解淀粉芽孢杆菌中性蛋白酶基因的克隆与表达

    Institute of Scientific and Technical Information of China (English)

    杜珊珊; 王颖; 张东杰

    2015-01-01

    To obtain the efficient neutral protease gene,the neutral protease gene(npr)was amplifier from Bacillus amyloliquefaciens by using PCR technology. After the double enzyme by BamHⅠand SalⅠ,the gene was linked with the express vecter PET-28a and transformed into Escherichia coliBL21. The gene expression product of gene engineering bacteria was analyzed by SDS-PAGE electrophoresis. The length of the amplified specific gene sequences was 1 566 bp,and the gene encoded 522 amino acids and contained the complete ORF. The sequence homology of the gene reached 100%,and the protein molecular weight was 57.4 kDa. By IPTG induction,the neutral protease gene was expressed highly in recombinant strain. By changing the IPTG induction factors such as concentration,temperature and induction time,the best induction conditions were additive IPTG 0.8 mmol·L-1,temperature 30℃and induction 4 h,and the highest enzyme activity was 450 U·mL-1.%为了获得高效的中性蛋白酶基因,试验用PCR方法从解淀粉芽孢杆菌中扩增中性蛋白酶基因(npr),通过BamHⅠ、SalⅠ双酶切后,将该基因与表达载体PET-28a连接,同时转入到大肠杆菌BL21中表达,通过SDS-PAGE电泳技术对构建的工程菌的基因表达产物进行分析。获得特异 npr基因序列含1566 bp,编码522个氨基酸,含有完整的ORF,同源性达到100%。蛋白酶的分子量为57.4 kDa。IPTG能诱导中性蛋白酶基因在重组菌进行表达,通过改变IPTG诱导浓度、诱导温度及诱导时间等因素,得出在添加剂IPTG至终浓度为0.8 mmol·L-1,30℃诱导4 h为最佳诱导条件,获得最高酶活为450 U·mL-1。

  15. Application of spore laccase from Bacillus amyloliquefaciens in dye decolorization%解淀粉芽孢杆菌芽孢漆酶在染料脱色中的应用

    Institute of Scientific and Technical Information of China (English)

    栗君; 李国富; 芦磊; 潘俊波; 赵敏; 王天女; 徐腾飞; 王靖瑶

    2013-01-01

    Spore laccase from Bacillus amyloliquefaciens LC03 has good stability. In this work, spore suspension with laccase activity was prepared and tested for its ability in decolorization of four synthetic dyes,including remazol brilliant blue R(RBBR) , reactive black 5, indigo carmine and crystal violet. Laccase mediators were screened to improve the decolorization process. The effects of enzyme and mediator concentration on simulated dye effluent decolorization were also investigated. The results showed that no decolorization of RBBR, reactive black 5 and indigo carmine occurred in the absence of mediator, while more than 60. 00% decolorization of the three dyes were obtained when acetosyringone ( ACE) was present. The spore laccase-mediator system could efficiently decolorize the simulated dye effluent with 88. 64 U/L of spore laccase and 0. 5 mmol/L of ACE at pH 9. 0. More than 80. 00% of simulated dye effluent was decolorized after 2 hours, indicating potential application of this spore laccase in dye wastewater treatment.%解淀粉芽孢杆菌LC03的芽孢漆酶具有较好的稳定性,通过制备具有漆酶活性的芽孢悬液,研究了芽孢漆酶对4种合成染料RB亮蓝、活性黑、靛红和结晶紫的脱色效果,并筛选出促进染料脱色的漆酶介体,同时考察了酶浓度、介体浓度对模拟染料废水脱色的影响.结果表明:RB亮蓝、活性黑和靛红在无介体时不能被脱色,在乙酰丁香酮(ACE)介导下的脱色率都超过了60.00%;在pH9.0时,芽孢漆酶-介体系统对模拟染料废水脱色的酶浓度和介体浓度分别为88.64 U/L和0.5 mmol/L时,2h后脱色率可超过80.00%,表明该芽孢漆酶在染料废水的处理上具有较好的应用前景.

  16. 解淀粉芽孢杆菌BI2产抑菌物质的新型种衣剂的研制%A Novel Seed Coating Formula with Antifungal Substances Produced by Bacillus amyloliquefaciens BI2

    Institute of Scientific and Technical Information of China (English)

    王亚军; 李昆; 王德培

    2015-01-01

    The antifungal substances produced from Bacillus amyloliquefaciens BI2,were for the first time used asactive ingredients in seed coating. The fermented broth containing antifungal substances was ultrafiltered and freeze-dried to form lyophilized powder,and then mixed with composite film-forming agent solution. Finally,peanut seeds were coated with this kind of seed coating containing antifungal substances. The results showed that the best volume ratio of 4%, polyvinyl alco-hol(PVA)to 1.5%, sodium carboxymethyl cellulose(CMC-Na)was 5:1,which is the best film former recipe in seed coating,and it has no significant effect on seed germination potential and germination rate. The pH stability andthermal stability of the lyophilized powder of the fermentated broth containing antifungal substances are good. The MIC of the pow-der to inhibitAspergillus flavus spore germination is 1.92,mg/mL. When the content of that powder in the film former reaches 4,mg/mL,A. flavuswas completely inhibited.%将解淀粉芽孢杆菌BI2发酵所产抑菌物质作为新型种衣剂的有效成分与研制的复合型成膜剂溶液混合,制成可抑制黄曲霉孢子萌发的花生种子包衣.结果表明,选用 4%,聚乙烯醇(PVA)与 1.5%,羧甲基纤维素钠(CMC-Na)以体积比 5:1 混合作为种子包衣最佳成膜剂配方,经过包衣后对花生种子的发芽势和发芽率没有显著影响.含有抑菌物质的发酵液冻干粉的 pH 稳定性和热稳定性均较好.发酵液冻干粉抑制黄曲霉孢子萌发的最小质量浓度为1.92,mg/mL.在与花生种子混合时,发酵液冻干粉在成膜剂中的含量达到4,mg/mL时,黄曲霉完全被抑制.

  17. Colonization of Endophytic Bacillus amyloliquefaciens CC09 in Wheat Roots Observed under Transmission Electron Microscopy and Its Biocontrol Efficiency against Diseases%内生解淀粉芽孢杆菌CC09在小麦根部定殖的电镜观察及防病效果

    Institute of Scientific and Technical Information of China (English)

    杨洪凤; 余向阳; 薛雅蓉; 刘常宏

    2014-01-01

    采用抗利福平标记菌株的平板菌落计数法,检测了内生解淀粉芽孢杆菌 Bacillus amyloliquefaciens CC09在小麦根部的定殖能力及消长动态,发现菌株CC09在小麦根内、根表和根际均能定殖,接种后5 d定殖量分别稳定维持在2.7×105、2.0×105和5.5×105 cfu/g。透射电镜观察发现,菌株CC09能够在小麦根组织的皮层细胞、细胞间隙、中柱鞘及髓腔中定殖,且不影响根组织细胞结构。室内盆栽试验表明,用菌株CC09发酵液灌根处理小麦,对由禾谷镰刀菌Fusarium graminearum侵染引起的麦苗赤霉病的防效高达90.7%,表明菌株CC09是潜在的防治小麦赤霉病的生防菌,具有良好的开发和应用价值。%Bacillus amyloliquefaciens can colonize many plant roots, promote plant growth and suppress pathogenic fungi. However, its colonization process and potential disease control efficacy on wheat roots and rhizosphere are rarely studied. By applying the rifampicin resistant mutant and plate diluting method, we have investigated the colonization capacity and population dynamics of endophytic B. amyloliquefaciens CC09 within wheat root tissues, surface and rhizosphere. Results showed that CC09 strain colonized well within root tissues, surfaces and rhizosphere with a density of 2.7×105, 2.0×105 and 5.5×105 cfu/g, respectively, at 5 d after inoculation, and maintained at these population levels thereafter. Moreover, the strain could colonize in the cortical cells, intercellular spaces, pericycle cells and canal tissues in wheat root tissues and did not show clear adverse impacts on the cell ultra-structures based on the transmission electron microscopy (TEM) observation. In addition, the cultural broth of the strain exhibited 90.7% control efficiency against wheat seedling blight caused by Fusarium graminearum using root-drenching pot assay under the greenhouse conditions. These results suggested that the endophytic B. amyloliquefaciens

  18. Elementary Properties of the Nematicidal Crude Toxin Produced by Bacillus amyloliquefaciens JK-JS3%一株毒杀松材线虫的解淀粉芽孢杆菌活性物质的基本性质

    Institute of Scientific and Technical Information of China (English)

    朱丽梅; 吴小芹; 陈江天; 徐旭凌

    2009-01-01

    从马尾松林中筛选出的解淀粉芽孢杆菌Bacillus amyloliquefaciens JK-JS3菌株对松材线虫Bursaphelenchus xylophilus具有较高杀线活性.本试验对JK-JS3菌株分泌的杀线活性物质的基本性质进行了研究.结果表明:该菌株产生的杀线组分是可随水分一同蒸发的非蛋白质类物质;其吸收峰在190nm到200nm之间;常温25℃和冷藏4℃下保存60d仍能保持杀线活性;不同温度和pH条件对其杀线组分的活性有影响,加热会降低其活性,碱性条件下具有较高的杀线活性;石油醚、氯仿、乙酸乙酯等有机溶剂不能将其活性物质从粗提液中提取.%Bacillus amyloliquefaciens JK-JS3, isolated from the leaf of the Pinus massoniana in Mount Zijin, has high nematicidal activity to Bursaphelenchus xylophilus. In order to isolate and purify the ne-maticidal components, the elementary characteristics of the nematicidal crude toxin have been studied in our experiment. The results indicated that the nematicidal toxin is not a protein which can be evaporated with the water and its maximum optical absorption is from 190 to 220 nm. The nematicidal activity of the toxin can sustain for a long period at 25 ℃ and 4 ℃. High temperature and pH condition can affect its nematicidal activity. It has strong nematicidal activity at the alkalinity condition. The nematicidal components can not be dissolved in the organic solvents such as petroleum ether, chloroform and ethyl acetate.

  19. Enterotoxin Production in Natural Isolates of Bacillaceae outside the Bacillus cereus Group

    OpenAIRE

    Phelps, Rebecca J.; McKillip, John L.

    2002-01-01

    Thirty-nine Bacillus strains obtained from a variety of environmental and food sources were screened by PCR for the presence of five gene targets (hblC, hblD, hblA, nheA, and nheB) in two enterotoxin operons (HBL and NHE) traditionally harbored by Bacillus cereus. Seven isolates exhibited a positive signal for at least three of the five possible targets, including Bacillus amyloliquefaciens, B. cereus, Bacillus circulans, Bacillus lentimorbis, Bacillus pasteurii, and Bacillus thuringiensis su...

  20. Optimization of liquid state fermentation conditions for cellulase production by Bacillus amyloliquefaciens strain Tu-115 with filter paper enzyme as index%以滤纸酶活力为指标优化解淀粉芽孢杆菌Tu-115菌株产纤维素酶液体发酵条件

    Institute of Scientific and Technical Information of China (English)

    姜军坡; 朱宝成; 王世英

    2014-01-01

    以滤纸酶活力为指标对解淀粉芽孢杆菌(Bacillus amyloliquefaciens)Tu-115菌株产纤维素酶液体发酵条件进行优化.通过单因素和正交试验相结合的方法,考察培养基中碳源、氮源、起始pH值、装瓶量、温度、接种量、发酵时间等发酵条件对产酶能力的影响.结果表明,当培养条件为葡萄糖4%、黄豆饼粉3%、培养基起始pH值4.0、接种量4%、装瓶量50 ml/250 ml,37℃发酵72 h时,发酵液中滤纸酶活力达到最高值,为3 309.90 U/ml,比优化前提高了125倍.优化后,Tu-115菌株产滤纸酶能力大大提高,达到了预期目的.

  1. Biocontrol Characteristics of Bacillus Species in Suppressing Stem Rot of Grafted Cactus Caused by Bipolaris cactivora.

    Science.gov (United States)

    Bae, Sooil; Kim, Sang Gyu; Kim, Young Ho

    2013-03-01

    One of the most important limiting factors for the production of the grafted cactus in Korea is the qualitative and quantitative yield loss derived from stem rots especially caused by Bipolaris cactivora. This study is aimed to develop microbial control agents useful for the control of the bipolaris stem rot. Two bacteria (GA1-23 and GA4-4) selected out of 943 microbial isolates because of their strong antibiotic activity against B. cactivora were identified as Bacillus subtilis and B. amyloliquefaciens, respectively, by the cultural characteristics, Biolog program and 16S rRNA sequencing analyses. Both bacterial isolates significantly inhibited the conidial germination and mycelial growth of the pathogen with no significant difference between the two, of which the inhibitory efficacies varied depending on the cultural conditions such as temperature, nutritional compositions and concentrations. Light and electron microscopy of the pathogen treated with the bacterial isolates showed the inhibition of spore germination with initial malformation of germ tubes and later formation of circle-like vesicles with no hyphal growth and hyphal disruption sometimes accompanied by hyphal swellings and shrinkages adjacent to the bacteria, suggesting their antibiotic mode of antagonistic activity. Control efficacy of B. subtilis GA1-23 and B. amyloliquefaciens GA4-4 on the cactus stem rot were not as high as but comparable to that of fungicide difenoconazole when they were treated simultaneously at the time of pathogen inoculation. All of these results suggest the two bacterial isolates have a good potential to be developed as biocontrol agents for the bipolaris stem rot of the grafted cactus.

  2. Biocontrol Characteristics of Bacillus Species in Suppressing Stem Rot of Grafted Cactus Caused by Bipolaris cactivora

    Directory of Open Access Journals (Sweden)

    Sooil Bae

    2013-03-01

    Full Text Available One of the most important limiting factors for the production of the grafted cactus in Korea is the qualitative and quantitative yield loss derived from stem rots especially caused by Bipolaris cactivora. This study is aimed to develop microbial control agents useful for the control of the bipolaris stem rot. Two bacteria (GA1-23 and GA4-4 selected out of 943 microbial isolates because of their strong antibiotic activity against B. cactivora were identified as Bacillus subtilis and B. amyloliquefaciens, respectively, by the cultural characteristics, Biolog program and 16S rRNA sequencing analyses. Both bacterial isolates significantly inhibited the conidial germination and mycelial growth of the pathogen with no significant difference between the two, of which the inhibitory efficacies varied depending on the cultural conditions such as temperature, nutritional compositions and concentrations. Light and electron microscopy of the pathogen treated with the bacterial isolates showed the inhibition of spore germination with initial malformation of germ tubes and later formation of circle-like vesicles with no hyphal growth and hyphal disruption sometimes accompanied by hyphal swellings and shrinkages adjacent to the bacteria, suggesting their antibiotic mode of antagonistic activity. Control efficacy of B. subtilis GA1-23 and B. amyloliquefaciens GA4-4 on the cactus stem rot were not as high as but comparable to that of fungicide difenoconazole when they were treated simultaneously at the time of pathogen inoculation. All of these results suggest the two bacterial isolates have a good potential to be developed as biocontrol agents for the bipolaris stem rot of the grafted cactus.

  3. Biocontrol Characteristics of Bacillus Species in Suppressing Stem Rot of Grafted Cactus Caused by Bipolaris cactivora

    Science.gov (United States)

    Bae, Sooil; Kim, Sang Gyu; Kim, Young Ho

    2013-01-01

    One of the most important limiting factors for the production of the grafted cactus in Korea is the qualitative and quantitative yield loss derived from stem rots especially caused by Bipolaris cactivora. This study is aimed to develop microbial control agents useful for the control of the bipolaris stem rot. Two bacteria (GA1-23 and GA4-4) selected out of 943 microbial isolates because of their strong antibiotic activity against B. cactivora were identified as Bacillus subtilis and B. amyloliquefaciens, respectively, by the cultural characteristics, Biolog program and 16S rRNA sequencing analyses. Both bacterial isolates significantly inhibited the conidial germination and mycelial growth of the pathogen with no significant difference between the two, of which the inhibitory efficacies varied depending on the cultural conditions such as temperature, nutritional compositions and concentrations. Light and electron microscopy of the pathogen treated with the bacterial isolates showed the inhibition of spore germination with initial malformation of germ tubes and later formation of circle-like vesicles with no hyphal growth and hyphal disruption sometimes accompanied by hyphal swellings and shrinkages adjacent to the bacteria, suggesting their antibiotic mode of antagonistic activity. Control efficacy of B. subtilis GA1-23 and B. amyloliquefaciens GA4-4 on the cactus stem rot were not as high as but comparable to that of fungicide difenoconazole when they were treated simultaneously at the time of pathogen inoculation. All of these results suggest the two bacterial isolates have a good potential to be developed as biocontrol agents for the bipolaris stem rot of the grafted cactus. PMID:25288927

  4. Extraction and Structure Analysis of the Nematicidal Active Substances Produced by Bacillus amyloliquefaciens JK-JS3%解淀粉芽孢杆菌JK-JS3杀线活性物质的分离与结构分析

    Institute of Scientific and Technical Information of China (English)

    朱丽梅; 吴小芹; 胡飞杰; 徐浩

    2011-01-01

    Bacillus amyloliquefaciens JK-JS3, isolated from the leaf of the Pinus massoniana in Dr. Sun Yat-sen' s mausoleum, is a bacterium and has high nematicidal activity to a nematode(Bursaphelenchus xylophilus). A water solution with the nematicidal activity was isolated and purified from the bacterium culture medium by acid and alkali sedimentation method, and the components was analyzed by gas chromatography and mass spectrum. The result showed that the nematicidal activity components was composed of three compounds which included Hexahydro-5-methyI-l-phenyl-l ,3,5-triazine-2-thione, 2,2-dimethyl-N-phenylpropanethioamide and Semiarbazide,4-( 1,7,7-trimethylbicyclo[2. 2. 1 Jheptyl-2-ideno)-. The three compounds have not been reported to have the nematicidal activity before based on a search of information and patents of the three chemical compounds in the SciFinder.%利用酸碱沉淀法分离提纯解淀粉芽孢杆菌JK-JS3分泌的杀线活性物质,获得具有杀线活性的水溶液,通过气质联用方法对其化合物的结构进行分析和鉴定,从该杀线组合物中共鉴定出3种化合物,分别为5 -甲基-1 -苯基-6H -1,3,5-三嗪-2-硫酮、2,2-二甲基-N-苯丙硫代酰胺和樟脑醛缩氨脲.对3种化合物在SciFinder数据库中进行专利和文献检索,未检索到上述化合物具有杀松材线虫活性的报道.

  5. Effects of Bacillus amyloliquefaciens B9601-Y2 on Diseases Control and Growth-promotion of Maize%解淀粉芽孢杆菌B9601-Y2对玉米的防病促生长效果研究

    Institute of Scientific and Technical Information of China (English)

    崔文艳; 何朋杰; 尚娟; 李艳云; 吴毅歆; 何月秋

    2015-01-01

    By dual-culture confrontation assay(DCA) and pot culture test, to study the effect of Bacillus amylo?liquefaciens B9601-Y2(Y2) to control southern leaf blight(SLB) and stalk rot and increase biomass of maize. DCA showed that formulate suspension(FS), cell-free filtrate(CF) and cell suspension(CS) of Y 2 could inhibit mycelial growth of Bipolaris maydis and Fusarium verticillioides. Pot culture test indicated that those suspensions could con?trol over 60%of SLB and over 50%of stalk rot with the tendency FS>CS>CF. Those suspensions promoted over 20%of root length, plant type height, dry weight of above-ground and dry weight of under-ground for healthy maize and for the disease seedlings inoculated with B. maydis and F. verticillioides by spray or drenching. Therefore, Y2 has the potential serving as a root and leaf biofertilizer with disease control effect for maize.%通过平板对峙培养及盆栽试验,研究解淀粉芽孢杆菌B9601-Y2(Y2)防治玉米小斑病和茎基腐病以及提高玉米生物量的效果.平板对峙培养结果表明,Y2发酵液、无菌滤液及菌体悬液对玉米小斑病菌和茎基腐病原菌均有拮抗作用.盆栽实验结果显示,3种处理对玉米小斑病防效60%左右,对茎腐病防效50%左右,防效依次为Y2发酵液>菌体悬液>无菌滤液.单独使用Y2发酵液、无菌滤液及菌体悬液处理的苗根长、株高、鲜重和干重均显著高于清水和病原菌对照20%以上,喷施或灌溉接种病原菌的玉米苗生长量显著高于单独接种病原菌处理,有效消除了病原菌对植株生长的影响.因此,生防菌Y2具有用于防治玉米病害和具有根肥及叶面肥的潜力.

  6. Effects of Different Nitrogen and Carbon Sources on the Production of Antifungal Lipopeptides from Bacillus amyloliquefaciens Q-426%氮源和碳源对解淀粉芽孢杆菌Q-426抗菌脂肽合成的影响

    Institute of Scientific and Technical Information of China (English)

    赵朋超; 权春善; 金黎明; 王丽娜; 范圣第

    2012-01-01

    微生物来源的环状脂肽在生物农药以及医学领域极具应用潜力.通过测量抑菌活性并利用反相高效液相色谱( RP-HPLC),液相质谱联用(HPLC-MS)和串联质谱(MS/MS)技术检测抗菌脂肽组分的变化研究了氮(N)源、碳(C)源和培养基中的初始pH值对解淀粉芽孢杆菌Q-426菌株中抗菌脂肽bacillomycin D和fengycins合成的影响,从而为进一步研究它们生物合成的基因调控以及更有目的性提高产量提供理论依据.结果表明:L-组氨酸、L-赖氨酸、甘油、山梨醇以及培养基中的[OH]-均能促进脂肽bacillomycin D的合成,但它们在该实验菌株抗菌脂肽bacillomycin D合成途径中的调控靶点有所不同.%Cyclic lipopeptides, which are produced by several types of microorganisms, will have great potential in the agricultural and biomedical field with their unusual antibacterial, antifungal and antiviral activities. To provide a theoretical basis for investigating the gene regulation of antifungal lipopeptides and enhancing their yield more effectively in the next step, effects of three factors ( nitrogen sources, carbon sources and initial pH in the medium) on the production of bacillomycin D and fengycins from Bacillus amyloliquefaciens Q-426 were analyzed by measurement of antifungal activities against Curvularia lunata ( Walk) Boed, reverse-phase high performance liquid chromatography ( RP-HPLC ) , HPLC-mass spectrometry ( MS) and MS/MS. Finally, the results were screened as follows; L-histine, L-lysine, glycerol, sorbitol and [ OH ]" in the medium could promote the accumulation of bacillomycin D, but less effective to that of fengycins. However, further analysis of RP-HPLC spectrum revealed the three factors above played different roles in the pathway of bacillomycin D biosynthesis from strain Q-426.

  7. The ultrasound-assisted extraction and identification of antifungal substances from B. amyloliquefaciens strain NJN-6 suppressing Fusarium oxysporum.

    Science.gov (United States)

    Yuan, Jun; Raza, Waseem; Huang, Qiwei; Shen, Qirong

    2012-12-01

    The primary mechanism underlying antagonism among microorganisms is the production of antagonistic substances called antibiotics that inhibit the growth of pathogens. In this study, the antagonistic substances produced by the Bacillus amyloliquefaciens strain NJN-6 that had antifungal activity against Fusarium oxysporum were extracted and identified. The active antifungal substance was extracted from dried leavening with ultrasound-assisted extraction (UAE), using n -butanol as the extractant. HPLC/ESI-MS was performed to investigate the components of the extracts. The results of the study showed that the antimicrobial substances consisted of three homologues of the iturin A family with molecular weights of 1043, 1057 and 1071 Da and of two homologues of the fengycin family with molecular weights of 1477 and 1491 Da. The effects of ultrasonic treatment time, extraction time and extractant volume, three major methodological parameters, were also studied to determine the optimal conditions for extraction. Compared with traditional extraction techniques, UAE is a simple, cheap and environmentally friendly method that represents a new option for the isolation and identification of lipopeptides and other active compounds. These antifungal substances extracted and identified from Bacillus amyloliquefaciens NJN-6 will help us to understand its biocontrol mechanism against Fusarium oxysporum.

  8. Analysis of myo-inositol hexakisphosphate hydrolysis by Bacillus phytase

    DEFF Research Database (Denmark)

    Kerovuo, J.; Rouvinen, J.; Hatzack, Frank-Andreas

    2000-01-01

    Phytic acid (myo-inositol hexakisphosphate, InsP(6)) hydrolysis by Bacillus phytase (PhyC) was studied. The enzyme hydrolyses only three phosphates from phytic acid. Moreover, the enzyme seems to prefer the hydrolysis of every second phosphate over that of adjacent ones. Furthermore, it is very...... a reaction mechanism different from that of other phytases. By combining the data presented in this study with (1) structural information obtained from the crystal structure of Bacillus amyloliquefaciens phytase [Ha, Oh, Shin, Kim, Oh, Kim, Choi and Oh (2000) Nat. Struct. Biol. 7, 147-153], and (2) computer...

  9. Deletion of genes involved in glutamate metabolism to improve poly-gamma-glutamic acid production in B. amyloliquefaciens LL3.

    Science.gov (United States)

    Zhang, Wei; He, Yulian; Gao, Weixia; Feng, Jun; Cao, Mingfeng; Yang, Chao; Song, Cunjiang; Wang, Shufang

    2015-02-01

    Here, we attempted to elevate poly-gamma-glutamic acid (γ-PGA) production by modifying genes involved in glutamate metabolism in Bacillus amyloliquefaciens LL3. Products of rocR, rocG and gudB facilitate the conversion from glutamate to 2-oxoglutarate in Bacillus subtillis. The gene odhA is responsible for the synthesis of a component of the 2-oxoglutarate dehydrogenase complex that catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl coenzyme A. In-frame deletions of these four genes were performed. In shake flask experiments the gudB/rocG double mutant presented enhanced production of γ-PGA, a 38 % increase compared with wild type. When fermented in a 5-L fermenter with pH control, the γ-PGA yield of the rocR mutant was increased to 5.83 g/L from 4.55 g/L for shake flask experiments. The gudB/rocG double mutant produced 5.68 g/L γ-PGA compared with that of 4.03 g/L for the wild type, a 40 % increase. Those results indicated the possibility of improving γ-PGA production by modifying glutamate metabolism, and identified potential genetic targets to improve γ-PGA production.

  10. Identification and biology function determination of Bacillus amyloliquefaciens S27 and its antagonism for several pathogenic fungus of potato%解淀粉芽孢杆菌S27的鉴定、生物学功能测定及其对马铃薯病原真菌的拮抗作用研究

    Institute of Scientific and Technical Information of China (English)

    冯金龙; 杨成德; 陈秀蓉; 王玉琴; 姚玉玲; 王颖

    2013-01-01

    试验采用平板对峙法和Salkowski比色法测定了细菌S27的生物学功能,并对其进行了形态学及16SrDNA序列鉴定.结果表明:该菌对马铃薯枯萎病菌(Fusarium tricinctum),马铃薯丝核病菌(Rhizoctonia solani)和马铃薯炭疽病菌(Colletotrichum coccodes)都有良好的抑制作用,可致菌丝膨大,断裂及溶解等;该菌株在含有色氨酸和不含色氨酸的King培养基中分泌IAA的量分别为20.15和6.16 mg/L;能有效的溶解无机磷Ca3 (PO4)2,其溶磷量为505.41 mg/L.通过形态学与16SrDNA基因序列同源性分析,初步确定菌株S27为解淀粉芽孢杆菌(Bacillus amylolique faciens).

  11. Potential role of Bacillus endospores in soil amended by olive mill wastewater.

    Science.gov (United States)

    Naclerio, Gino; Falasca, Antonio; Petrella, Emma; Nerone, Valentina; Cocco, Federica; Celico, Fulvio

    2010-01-01

    The main aim of this work was to know how spread is laccase activity in spores of Bacillus species isolated from a soil where Italian law allows olive mill wastewater (OMW) spreading, and to investigate the potential role of such autochthonous soil microorganisms in degradation of OMW phenols, and prevention of groundwater pollution. Laccase activity was detected for the first time in spores of wild-type Bacillus pumilus, B. cereus sensu lato, and B. amyloliquefaciens strains. Because B. pumilus, B. cereus sensu lato, and B. amyloliquefaciens, together with B. subtilis account for a total of 93% of Bacillus isolates at the study site, the nearly totality of Bacillus spores reveals laccase activity. Thus, taking also into consideration that Bacillus spores are more abundant (about 100-fold) than white-rot fungi (that possess a well known extracellular, radical-based ligninolytic enzyme system capable of degrading OMW phenols) in the studied soil, these spores may contribute to in-situ degradation of OMW phenols. This role is further emphasized by dilution of crude OMW during infiltration of rainwater through soil that allows to minimize the antibacterial activity of phenols. The widespread presence of Bacillus spores in soils indicates a potential detoxifying role of these spores in a broader context.

  12. Bacillus coagulans

    Science.gov (United States)

    Bacillus coagulans is a type of bacteria. It is used similarly to lactobacillus and other probiotics as "beneficial" bacteria. People take Bacillus coagulans for diarrhea, including infectious types such as ...

  13. Mechanisms of biofilm formation in paper machine by Bacillus species: the role of Deinococcus geothermalis.

    Science.gov (United States)

    Kolari, M; Nuutinen, J; Salkinoja-Salonen, M S

    2001-12-01

    Mechanisms for the undesired persistence of Bacillus species in paper machine slimes were investigated. Biofilm formation was measured for industrial Bacillus isolates under paper machine wet-end-simulating conditions (white water, pH 7, agitated at 45 degrees C for 1-2 days). None of the 40 tested strains of seven Bacillus species formed biofilm on polished stainless steel or on polystyrene surfaces as a monoculture. Under the same conditions, Deinococcus geothermalis E50051 covered all test surfaces as a patchy thick biofilm. The paper machine bacilli, however, formed mixed biofilms with D. geothermalis E50051 as revealed by confocal microscopy. Biofilm interactions between the bacilli and the deinococci varied from synergism to antagonism. Synergism in biofilm formation of D. geothermalis E50051 was strongest with Bacillus coagulans D50192, and with the type strains of B. coagulans, B. amyloliquefaciens or B. pumilus. Two B. licheniformis, one B. amyloliquefaciens, one B. pumilus and four B. cereus strains antagonized biofilm production by D. geothermalis. B. licheniformis D50141 and the type strain of B. licheniformis were the strongest antagonists. These bacteria inhibited deinococcal growth by emitting heat-stable, methanol-soluble metabolite(s). We conclude that the persistence of Bacillus species in paper machine slimes relates to their ability to conquer biofilms formed by primary colonizers, such as D. geothermalis.

  14. Antagonist effects of Bacillus spp. strains against Fusarium graminearum for protection of durum wheat (Triticum turgidum L. subsp. durum).

    Science.gov (United States)

    Zalila-Kolsi, Imen; Ben Mahmoud, Afif; Ali, Hacina; Sellami, Sameh; Nasfi, Zina; Tounsi, Slim; Jamoussi, Kaïs

    2016-11-01

    Bacillus species are attractive due to their potential use in the biological control of fungal diseases. Bacillus amyloliquefaciens strain BLB369, Bacillus subtilis strain BLB277, and Paenibacillus polymyxa strain BLB267 were isolated and identified using biochemical and molecular (16S rDNA, gyrA, and rpoB) approaches. They could produce, respectively, (iturin and surfactin), (surfactin and fengycin), and (fusaricidin and polymyxin) exhibiting broad spectrum against several phytopathogenic fungi. In vivo examination of wheat seed germination, plant height, phenolic compounds, chlorophyll, and carotenoid contents proved the efficiency of the bacterial cells and the secreted antagonist activities to protect Tunisian durum wheat (Triticum turgidum L. subsp. durum) cultivar Om Rabiia against F. graminearum fungus. Application of single bacterial culture medium, particularly that of B. amyloliquefaciens, showed better protection than combinations of various culture media. The tertiary combination of B. amyloliquefaciens, B. subtilis, and P. polymyxa bacterial cells led to the highest protection rate which could be due to strains synergistic or complementary effects. Hence, combination of compatible biocontrol agents could be a strategic approach to control plant diseases.

  15. Genomic and metabolic traits endow Bacillus velezensis CC09 with a potential biocontrol agent in control of wheat powdery mildew disease.

    Science.gov (United States)

    Cai, Xun-Chao; Liu, Chang-Hong; Wang, Bao-Tong; Xue, Ya-Rong

    2017-03-01

    Bacillus velezensis CC09, which was isolated from healthy leaves of Cinnamomum camphora and previously identified as Bacillus amyloliquefaciens CC09, shows great potential as a new biocontrol agent, in control of many phytopathogenic diseases. To extend our understanding of the potential antifungal capacities, we did a whole genome analysis of strain CC09. Result shows that strain CC09 has a relatively large genome size (4.17Mb) with an average GC content of 46.1%, and 4021 predicted genes. Thirteen secondary metabolites encoding clusters have been identified within the genome of B. velezensis CC09 using genome mining technique. Data of comparative genomic analysis indicated that 3 of the clusters are conserved by all strains of B. velezensis, B. amyloliquefaciens and B. subtilis 168, 9 by B. velezensis and B. amyloliquefaciens, and 2 by all strains of B. velezensis. Another 2 clusters encoding NRPS (Non-Ribosomal Peptide Synthetases) and NRPS-TransATPKS (NRPS and trans-Acyl Transferase Polyketide Synthetases) respectively are observed only in 15 B. velezensis strains, which might lead to the synthesis of novel bioactive compounds and could be explored as antimicrobial agents in the future. These clusters endow B. velezensis CC09 with strong and broad antimicrobial activities, for example, in control of wheat powdery mildew disease. Moreover, our data further confirmed the taxonomy of strain CC09 is a member of B. velezensis rather than a strain of B. amyloliquefaciens based on core genome sequence analysis using phylogenomic approach.

  16. Novel routes for improving biocontrol activity of Bacillus based bioinoculants

    Directory of Open Access Journals (Sweden)

    Liming eWu

    2015-12-01

    Full Text Available Biocontrol formulations prepared from plant-growth-promoting bacteria are increasingly applied in sustainable agriculture. Especially inoculants prepared from endospore-forming Bacillus strains have been proven as efficient and environmental-friendly alternative to chemical pesticides due to their long shelf life, which is comparable with that of agrochemicals. However, these formulations of the first generation are sometimes hampered in their action and do not fulfill in each case the expectations of the appliers. In this review we use the well-known plant-associated Bacillus amyloliquefaciens type strain FZB42 as example for the successful application of different techniques offered today by comparative, evolutionary and functional genomics, site-directed mutagenesis and strain construction including marker removal, for paving the way for preparing a novel generation of biocontrol agents.

  17. Isolation, Identification, and Characterization of a Cellulolytic Bacillus amyloliquefaciens Strain SS35 from Rhinoceros Dung

    OpenAIRE

    2013-01-01

    Cellulose hydrolyzing bacteria were isolated from rhinoceros dung and tested for clear zone formation around the colonies on the agar plates containing the medium amended with carboxymethylcellulose as a sole carbon source. Isolates were further screened on the basis of carboxymethylcellulase production in liquid medium. Out of 36 isolates, isolate no. 35 exhibited maximum enzyme activity of 0.079 U/mL and was selected for further identification by using conventional biochemical tests and phy...

  18. High-temperature characteristics of AixGa1-xN/GaN Schottky diodes

    Institute of Scientific and Technical Information of China (English)

    Zhang Xiaoling; Li Fei; Lv Changzhi; Xie Xuesong; Li Ying; Mohammad S N

    2009-01-01

    High-temperature characteristics of the metal/AlxGa1_xN/GaN M/S/S (M/S/S) diodes have been studied with current-voltage (I-V) and capacitance-voltage (C-V) measurements at high temperatures. Due to the presence of the piezoelectric polarization field and a quantum well at the AIxGa1_xN/GaN interface, the AIxGa1_xN/GaNdiodes show properties distinctly different from those of the AIxGa1_xN diodes. For the AIxGa1_xN/GaN diodes, an increase in temperature accompanies an increase in barrier height and a decrease in ideality factor, while the AIxGa1_xN diodes are opposite. Furthermore, at room temperature, both reverse leakage current and reverse break-down voltage are superior for the AIxGa1_xN/GaN diodes to those for the AIxGa1_xN diodes.

  19. Enterotoxin production in natural isolates of Bacillaceae outside the Bacillus cereus group.

    Science.gov (United States)

    Phelps, Rebecca J; McKillip, John L

    2002-06-01

    Thirty-nine Bacillus strains obtained from a variety of environmental and food sources were screened by PCR for the presence of five gene targets (hblC, hblD, hblA, nheA, and nheB) in two enterotoxin operons (HBL and NHE) traditionally harbored by Bacillus cereus. Seven isolates exhibited a positive signal for at least three of the five possible targets, including Bacillus amyloliquefaciens, B. cereus, Bacillus circulans, Bacillus lentimorbis, Bacillus pasteurii, and Bacillus thuringiensis subsp. kurstaki. PCR amplicons were confirmed by restriction enzyme digest patterns compared to a positive control strain. Enterotoxin gene expression of each strain grown in a model food system (skim milk) was monitored by gene-specific reverse transcription-PCR and confirmed with the Oxoid RPLA and Tecra BDE commercial kits. Lecithinase production was noted on egg yolk-polymyxin B agar for all strains except B. lentimorbis, whereas discontinuous beta hemolysis was exhibited by all seven isolates grown on 5% sheep blood agar plates. The results of this study confirm the presence of enterotoxin genes in natural isolates of Bacillus spp. outside the B. cereus group and the ability of these strains to produce toxins in a model food system under aerated conditions at 32 degrees C.

  20. Production and Characterization of Keratinolytic Protease from New Wool-Degrading Bacillus Species Isolated from Egyptian Ecosystem

    Directory of Open Access Journals (Sweden)

    Mohamed A. Hassan

    2013-01-01

    Full Text Available Novel keratin-degrading bacteria were isolated from sand soil samples collected from Minia Governorate, Egypt. In this study, the isolates were identified as Bacillus amyloliquefaciens MA20 and Bacillus subtilis MA21 based on morphological and biochemical characteristics as well as 16S rRNA gene sequencing. B. amyloliquefaciens MA20 and B. subtilis MA21 produced alkaline keratinolytic serine protease when cultivated in mineral medium containing 1% of wool straight off sheep as sole carbon and nitrogen source. The two strains were observed to degrade wool completely to powder at pH 7 and 37°C within 5 days. Under these conditions the maximum activity of proteases produced by B. amyloliquefaciens MA20 and B. subtilis MA21 was 922 and 814 U/ml, respectively. The proteases exhibited optimum temperature and pH at 60°C and 9, respectively. However, the keratinolytic proteases were stable in broad range of temperature and pH values towards casein Hammerstein. Furthermore the protease inhibitor studies indicated that the produced proteases belong to serine protease because of their sensitivity to PMSF while they were inhibited partially in presence of EDTA. The two proteases are stable in most of the used organic solvents and enhanced by metals suggesting their potential use in biotechnological applications such as wool industry.

  1. Production and Characterization of Keratinolytic Protease from New Wool-Degrading Bacillus Species Isolated from Egyptian Ecosystem

    Science.gov (United States)

    Hassan, Mohamed A.; Haroun, Bakry M.; Amara, Amro A.; Serour, Ehab A.

    2013-01-01

    Novel keratin-degrading bacteria were isolated from sand soil samples collected from Minia Governorate, Egypt. In this study, the isolates were identified as Bacillus amyloliquefaciens MA20 and Bacillus subtilis MA21 based on morphological and biochemical characteristics as well as 16S rRNA gene sequencing. B. amyloliquefaciens MA20 and B. subtilis MA21 produced alkaline keratinolytic serine protease when cultivated in mineral medium containing 1% of wool straight off sheep as sole carbon and nitrogen source. The two strains were observed to degrade wool completely to powder at pH 7 and 37°C within 5 days. Under these conditions the maximum activity of proteases produced by B. amyloliquefaciens MA20 and B. subtilis MA21 was 922 and 814 U/ml, respectively. The proteases exhibited optimum temperature and pH at 60°C and 9, respectively. However, the keratinolytic proteases were stable in broad range of temperature and pH values towards casein Hammerstein. Furthermore the protease inhibitor studies indicated that the produced proteases belong to serine protease because of their sensitivity to PMSF while they were inhibited partially in presence of EDTA. The two proteases are stable in most of the used organic solvents and enhanced by metals suggesting their potential use in biotechnological applications such as wool industry. PMID:23936776

  2. Room-temperature ferromagnetic semiconductor MnxGa1-xSb

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    Ferromagnetic semiconductor MnxGa1-xSb single crystals were fabricated by Mn-ions implantation, deposition, and the post annealing. Magnetic hysteresis-loops in the MnxGa1-xSb single crystals were obtained at room temperature (300 K). The structure of the ferromagnetic semiconductor MnxGa1-xSb single crystal was analyzed by X- ray diffraction. The distribution of carrier concentrations in MnxGa1-xSb was investigated by electrochemical capacitance-voltage profiler. The content of Mn in MnxGa1-xSb varied gradually from x = 0.09 near the surface to x = 0 in the wafer inner analyzed by X-ray diffraction. Electrochemical capacitance-voltage profiler reveals that the concentration of p-type carriers in MnxGa1-xSb is as high as 1×1021 cm-3, indicating that most of the Mn atoms in MnxGa1-xSb take the site of Ga, and play a role of acceptors.

  3. First-Principles Calculations Of Electronic Structures of New Ⅲ-Ⅴ Semiconductors: BxGa1-x As and Tlx Ga1-x As alloys

    Institute of Scientific and Technical Information of China (English)

    ZHOU Jing; REN Xiao-Min; HUANG Yong-Qing; WANG Qi; HUANG Hui

    2008-01-01

    We investigate the electronic structures of new semiconductor alloys BxGa1-x As and Tlx Ga1-x As, employing first-principles calculations within the density-functional theory and the generalized gradient approximation.The calculation results indicate that alloying a small Tl content with GaAs will produce larger modifications of the band structures compared to B. A careful investigation of the internal lattice structure relaxation shows that significant bond-length relaxations takes place in both the alloys, and it turns out that difference between the band-gap bowing behaviours for B and Tl stems from the different impact of atomic relaxation on the electronic structure. The relaxed structure yields electronic-structure results, which are in good agreement with the experimental data. Finally, a comparison of formation enthalpies indicates that the production Tlx Ga1-x As with Tl concentration of at least 8% is possible.

  4. Surface States in the AlxGa1-xN Barrier in AlxGa1-xN/GaN Heterosturctures

    Institute of Scientific and Technical Information of China (English)

    刘杰; 沈波; 王茂俊; 周玉刚; 陈敦军; 张荣; 施毅; 郑有炓

    2004-01-01

    Frequency-dependent capacitance-voltage (C-V) measurements have been performed on modulation-doped Al0.22Ga0.78N/GaN heterostructures to investigate the characteristics of the surface states in the Alx Ga1-xN barrier.Numerical fittings based on the experimental data indicate that there are surface states with high density locating on the AlxGa1-xN barrier. The density of the surface states is about 1012 cm-2 eV-1, and the time constant is about 1 μs. It is found that an insulating layer (Si3N4) between the metal contact and the surface of AlxGa1-xN can passivate the surface states effectively.

  5. Different temperature dependence of carrier transport properties between Alx Ga1-xN/InyGa1-yN/GaN and AlxGa1-xN/GaN heterostructures

    Institute of Scientific and Technical Information of China (English)

    Song Jie; Xu Fu-Jun; Huang Cheng-Cheng; Lin Fang; Wang Xin-Qiang; Yang Zhi-Jian; Shen Bo

    2011-01-01

    The temperature dependence of carrier transport properties of AlxGai-xN/InyGa1-yN/GaN and AlxGa1-xN/GaN heterostructures has been investigated. It is shown that the Hall mobility in Al0.25Ga0.75N/In0.03Ga0.97N/GaN heterostructures is higher than that in Al0.25Ga0.75N/GaN heterostructures at temperatures above 500 K, even the mobility in the former is much lower than that in the latter at 300 K. More importantly, the electron sheet density in Al0.25Ga0.75N/In0.03Ga0.97N/GaN heterostructures decreases slightly,whereas the electron sheet density in Al0.25Ga0.75N/GaN heterostructures gradually increases with increasing temperature above 500 K. It is believed that an electron depletion layer is formed due to the negative polarization charges at the InyGa1-yN/GaN heterointerface induced by the compressive strain in the InyGa1-yN channel, which effectively suppresses the parallel conductivity originating from the thermal excitation in the underlying GaN layer at high temperatures.

  6. Bacillus vanillea sp. nov., Isolated from the Cured Vanilla Bean.

    Science.gov (United States)

    Chen, Yong-gan; Gu, Feng-lin; Li, Ji-hua; Xu, Fei; He, Shu-zhen; Fang, Yi-ming

    2015-02-01

    A Gram-positive bacterium, designated strain XY18(T), was isolated from a cured vanilla bean in Hainan province, China. Cells were rod-shaped, endospore producing, and peritrichous flagella. Strain XY18(T) grew at salinities of 0-8 % (w/v) NaCl (optimally 1-4 %), pH 4.0-8.0 (optimally 5.0-7.0 %) and temperature range 20-45 °C (optimally 28-35 °C). The predominant menaquinone was MK-7. The major cellular fatty acids were anteiso-C15:0, iso-C15:0, anteiso-C17:0, and iso-C17:0. Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain XY18(T) was a member of the genus Bacillus, and closely related to B. amyloliquefaciens NBRC 15535(T) and B. siamensis PD-A10(T), with 99.1 and 99.2 % sequence similarity, respectively. However, the DNA-DNA hybridization value between strain XY18(T) and B. amyloliquefaciens NBRC 15535(T) was 35.7 %. The genomic DNA G+C content of strain XY18(T) was 46.4 mol%, significantly differed from B. siamensis PD-A10(T) (41.4 %), which was higher than the range of 4 % indicative of species. On the basis of polyphasic taxonomic study, including phenotypic features, chemotaxonomy, and phylogenetic analyses, strain XY18(T) represents a novel species within the genus Bacillus, for which the name Bacillus vanillea sp. nov. is proposed. The type strain is XY18(T) (=CGMCC 8629 = NCCB 100507).

  7. Phase stability and the arsenic vacancy defect in InxGa1−xAs

    KAUST Repository

    Murphy, S. T.

    2011-11-18

    The introduction of defects, such as vacancies, into InxGa1−xAs can have a dramatic impact on the physical and electronic properties of the material. Here we employ ab initio simulations of quasirandom supercells to investigate the structure of InxGa1−xAs and then examine the energy and volume changes associated with the introduction of an arsenic vacancy defect. We predict that both defect energies and volumes for intermediate compositions of InxGa1−xAs differ significantly from what would be expected by assuming a simple linear interpolation of the end member defect energies/volumes.

  8. Identification of single nucleotide polymorphisms (SNPs) in the 16S rRNA gene of foodborne Bacillus spp.

    Science.gov (United States)

    Fernández-No, I C; Böhme, K; Caamaño-Antelo, S; Barros-Velázquez, J; Calo-Mata, P

    2015-04-01

    The main goal of this work was the identification of single nucleotide polymorphisms (SNPs) in the 16S rRNA gene of foodborne Bacillus spp. that may be useful for typing purposes. These species include, among others, Bacillus cereus, an important pathogenic species involved in food poisoning, and Bacillus licheniformis, Bacillus subtilis and Bacillus pumilus, which are causative agents of food spoilage described as responsible for foodborne disease outbreaks. With this purpose in mind, 52 Bacillus strains isolated from culture collections and fresh and processed food were considered. SNP type "Y" at sites 212 and 476 appeared in the majority of B. licheniformis studied strains. SNP type "R" at site 278 was detected in many strains of the B. subtilis/Bacillus amyloliquefaciens group, while polymorphism "Y" at site 173 was characteristic of the majority of strains of B. cereus/Bacillus thuringiensis group. The analysis of SNPs provided more intra-specific information than phylogenetic analysis in the cases of B. cereus and B. subtilis. Moreover, this study describes novel SNPs that should be considered when designing 16S rRNA-based primers and probes for multiplex-PCR, Real-Time PCR and microarray systems for foodborne Bacillus spp.

  9. Characterization of Bacillus spp. strains for use as probiotic additives in pig feed

    DEFF Research Database (Denmark)

    Larsen, Nadja; Thorsen, Line; Kpikpi, Elmer Nayra

    2014-01-01

    for use as probiotic additives in pig feed. A total of 245 bacterial isolates derived from African fermented food, feces and soil were identified by 16S rRNA gene sequencing and screened for antimicrobial activity and growth in the presence of antibiotics, bile salts and at pH 4.0. Thirty-three Bacillus....... Isolates of B. amyloliquefaciens, B. subtilis and B. mojavensis, showed the best overall characteristics and, therefore, potential for usage as probiotic additives in feed. A large number of taxonomically diverse strains made it possible to reveal species and subspecies-specific trends, contributing to our...

  10. In vitro susceptibility of Bacillus spp. to selected antimicrobial agents.

    Science.gov (United States)

    Weber, D J; Saviteer, S M; Rutala, W A; Thomann, C A

    1988-01-01

    Although often dismissed as contaminants when isolated from blood cultures, Bacillus spp. are increasingly recognized as capable of causing serious systemic infections. As part of a clinical-microbiological study, 89 strains of Bacillus spp. isolated from clinical blood cultures between 1981 and 1985 had their species determined and were tested for antimicrobial agent susceptibility to 18 antibiotics. Species of isolates were determined by the API 50CH and API 20E systems. Bacillus cereus (54 strains) was the most common species isolated, followed by B. megaterium (13 strains), B. polymyxa (5 strains), B. pumilus (4 strains), B. subtilis (4 strains), B. circulans (3 strains), B. amyloliquefaciens (2 strains), B. licheniformis (1 strain), and Bacillus spp. (3 strains). Microdilution MIC susceptibility tests revealed all B. cereus strains to be susceptible to imipenem, vancomycin, chloramphenicol, gentamicin, and ciprofloxacin. Non-B. cereus strains were most susceptible to imipenem, vancomycin, LY146032, and ciprofloxacin. Disk susceptibility testing suggested that B. cereus was rarely susceptible to penicillins, semisynthetic penicillins, or cephalosporins with the exception of mezlocillin. In contrast, many non-B. cereus strains were susceptible to penicillins, semisynthetic penicillins, and cephalosporins, but marked variability was noted among species. PMID:3395100

  11. Phylogeny of marine Bacillus isolates from the Gulf of Mexico

    Science.gov (United States)

    Siefert, J. L.; Larios-Sanz, M.; Nakamura, L. K.; Slepecky, R. A.; Paul, J. H.; Moore, E. R.; Fox, G. E.; Jurtshuk, P. Jr

    2000-01-01

    The phylogeny of 11 pigmented, aerobic, spore-forming isolates from marine sources was studied. Forty-two biochemical characteristics were examined, and a 16S rDNA sequence was obtained for each isolate. In a phylogenetic tree based on 16S sequencing, four isolates (NRRL B-14850, NRRL B-14904, NRRL B-14907, and NRRL B-14908) clustered with B. subtilis and related organisms; NRRL B-14907 was closely related to B. amyloliquefaciens. NRRL B-14907 and NRRL B-14908 were phenotypically similar to B. amyloliquefaciens and B. pumilus, respectively. Three strains (NRRL B-14906, NRRL B-14910, and NRRL B-14911) clustered in a clade that included B. firmus, B. lentus, and B. megaterium. NRRL B-14910 was closely related phenotypically and phylogenetically to B. megaterium. NRRL B-14905 clustered with the mesophilic round spore-producing species, B. fusiformis and B. sphaericus; the isolate was more closely related to B. fusiformis. NRRL B-14905 displayed characteristics typical of the B. sphaericus-like organisms. NRRL B-14909 and NRRL B-14912 clustered with the Paenibacillus species and displayed characteristics typical of the genus. Only NRRL B-14851, an unusually thin rod that forms very small spores, may represent a new Bacillus species.

  12. Identification of Bacillus species occurring in Kantong, an acid fermented seed condiment produced in Ghana.

    Science.gov (United States)

    Kpikpi, Elmer Nayra; Thorsen, Line; Glover, Richard; Dzogbefia, Victoria Pearl; Jespersen, Lene

    2014-06-16

    Kantong is a condiment produced in Ghana by the spontaneous fermentation of kapok tree (Ceiba pentandra) seeds with cassava flour as an additive. Fermentation is over a 48h period followed by a drying and a kneading process. Although lactic acid bacteria (LAB) have previously been identified other micro-organisms may also be involved in the fermentation process. In this study we examined the occurrence of aerobic endospore-forming bacteria (AEB) in raw materials, during fermentation and in the final product at 2 production sites in Northern Ghana. Total aerobic mesophilic bacterial counts increased from 5.4±0.1log10CFU/g in the raw materials to 8.9±0.1log10CFU/g in the final products, with the AEB accounting for between 23% and 80% of the total aerobic mesophilic (TAM) counts. A total of 196 AEB were identified at a species/subspecies level by the use of phenotypic tests and genotypic methods including M13-PCR typing, 16S rRNA and gyrA gene sequencing. Bacillus subtilis subsp. subtilis (63% of the AEB), Bacillus safensis (26% of the AEB) and Bacillus amyloliquefaciens subsp. plantarum/Bacillus methylotrophicus (9% of the AEB) were the predominant Bacillus species during fermentation and in the final products. B. amyloliquefaciens/B. methylotrophicus originated from cassava flour, B. safensis from seeds and cassava flour, while the origin of B. subtilis was less clear. Brevibacillus agri and Peanibacillus spp. occurred sporadically. Further investigations are required to elucidate the role of AEB occurring in high numbers, in the fermentation of Kantong.

  13. Bacillus spp. Isolated from Puba as a Source of Biosurfactants and Antimicrobial Lipopeptides

    Science.gov (United States)

    Perez, Karla J.; Viana, Jaime dos Santos; Lopes, Fernanda C.; Pereira, Jamile Q.; dos Santos, Daniel M.; Oliveira, Jamil S.; Velho, Renata V.; Crispim, Silvia M.; Nicoli, Jacques R.; Brandelli, Adriano; Nardi, Regina M. D.

    2017-01-01

    Several products of industrial interest are produced by Bacillus, including enzymes, antibiotics, amino acids, insecticides, biosurfactants and bacteriocins. This study aimed to investigate the potential of two bacterial isolates (P5 and C3) from puba, a regional fermentation product from cassava, to produce multiple substances with antimicrobial and surface active properties. Phylogenetic analyses showed close relation of isolates P5 and C3 with Bacillus amyloliquefaciens and Bacillus thuringiensis, respectively. Notably, Bacillus sp. P5 showed antimicrobial activity against pathogens such as Listeria monocytogenes and Bacillus cereus, in addition to antifungal activity. The presence of genes encoding pre-subtilosin (sboA), malonyl CoA transacylase (ituD), and the putative transcriptional terminator of surfactin (sfp) were detected in Bacillus sp. P5, suggesting the production of the bacteriocin subtilosin A and the lipopeptides iturin A and surfactin by this strain. For Bacillus sp. C3 the presence of sboA and spas (subtilin) genes was observed by the first time in members of B. cereus cluster. Bacillus sp. P5 showed emulsifying capability on mineral oil, soybean biodiesel and toluene, while Bacillus sp. C3 showed emulsifying capability only on mineral oil. The reduction of the surface tension in culture medium was also observed for strain P5, confirming the production of surface-active compounds by this bacterium. Monoprotonated molecular species and adducts of sodium and potassium ions of surfactin, iturin, and fengycin were detected in the P5 culture medium. Comparative MS/MS spectra of the peak m/z 1030 (C14 surfactin A or C15 surfactin B [M+Na]+) and peak m/z 1079 (C15 iturin [M+Na]+) showed the same fragmentation profile of standards, confirming the molecular identification. In conclusion, Bacillus sp. P5 showed the best potential for the production of antifungal, antibacterial, and biosurfactant substances. PMID:28197131

  14. Bacillus spp. Isolated from Puba as a Source of Biosurfactants and Antimicrobial Lipopeptides.

    Science.gov (United States)

    Perez, Karla J; Viana, Jaime Dos Santos; Lopes, Fernanda C; Pereira, Jamile Q; Dos Santos, Daniel M; Oliveira, Jamil S; Velho, Renata V; Crispim, Silvia M; Nicoli, Jacques R; Brandelli, Adriano; Nardi, Regina M D

    2017-01-01

    Several products of industrial interest are produced by Bacillus, including enzymes, antibiotics, amino acids, insecticides, biosurfactants and bacteriocins. This study aimed to investigate the potential of two bacterial isolates (P5 and C3) from puba, a regional fermentation product from cassava, to produce multiple substances with antimicrobial and surface active properties. Phylogenetic analyses showed close relation of isolates P5 and C3 with Bacillus amyloliquefaciens and Bacillus thuringiensis, respectively. Notably, Bacillus sp. P5 showed antimicrobial activity against pathogens such as Listeria monocytogenes and Bacillus cereus, in addition to antifungal activity. The presence of genes encoding pre-subtilosin (sboA), malonyl CoA transacylase (ituD), and the putative transcriptional terminator of surfactin (sfp) were detected in Bacillus sp. P5, suggesting the production of the bacteriocin subtilosin A and the lipopeptides iturin A and surfactin by this strain. For Bacillus sp. C3 the presence of sboA and spas (subtilin) genes was observed by the first time in members of B. cereus cluster. Bacillus sp. P5 showed emulsifying capability on mineral oil, soybean biodiesel and toluene, while Bacillus sp. C3 showed emulsifying capability only on mineral oil. The reduction of the surface tension in culture medium was also observed for strain P5, confirming the production of surface-active compounds by this bacterium. Monoprotonated molecular species and adducts of sodium and potassium ions of surfactin, iturin, and fengycin were detected in the P5 culture medium. Comparative MS/MS spectra of the peak m/z 1030 (C14 surfactin A or C15 surfactin B [M+Na](+)) and peak m/z 1079 (C15 iturin [M+Na](+)) showed the same fragmentation profile of standards, confirming the molecular identification. In conclusion, Bacillus sp. P5 showed the best potential for the production of antifungal, antibacterial, and biosurfactant substances.

  15. Optimization of Amylase Production from B. amyloliquefaciens (MTCC 1270) Using Solid State Fermentation

    OpenAIRE

    2014-01-01

    Demand for microbial amylase production persists because of its immense importance in wide spectrum industries. The present work has been initiated with a goal of optimization of solid state fermentation condition for amylase using agroindustrial waste and microbial strain like B. amyloliquefaciens (MTCC 1270). In an aim to improve the productivity of amylase, fermentation has been carried out in the presence of calcium (Ca+2), Nitrate (NO3 −), and chloride ions (Cl−) as well as in the presen...

  16. Electron Transport in Ga-Rich InxGa1-xN Alloys

    Institute of Scientific and Technical Information of China (English)

    A. Yildiz; S. B. Lisesivdin; S. Acar; M. Kasap; M. Bosi

    2007-01-01

    Resistivity and Hall effect measurements on n-type undoped Ga-rich InxGa1-xN (0.06≤x≤0.135) alloys grown by metal-organic vapour phase epitaxy (MOVPE) technique are carried out as a function of temperature (15-350 K). Within the experimental error, the electron concentration in Inx Ga1- x N alloys is independent of temperature while the resistivity decreases as the temperature increases. Therefore, Inx Ga1-xN(0.06≤x≤0.135) alloys are considered in the metallic phase near the Mott transition. It has been shown that the temperaturedependent metallic conductivity can be well explained by the Mott model that takes into account electron-electron interactions and weak localization effects.

  17. The growth and characterization of Al(x)Ga(1-x)As/Ge heterostructures

    Science.gov (United States)

    Choi, S. W.; Bachmann, K. J.; Timmons, M. L.; Colpitts, T. S.; Posthill, J. B.

    1992-01-01

    The effects of the growth temperature and the Al(x)Ga(1-x)As layer thickness on the structural, optical, and electrical properties of Al(x)Ga(1-x)As/Ge heterostructures grown for photovoltaic applications were investigated using different-thickness (between 1 micron and 5 microns) Al(x)Ga(1-x)As layers grown by MOCVD in the temperature range between 660 and 780 C. Results obtained from double-crystal X-ray rocking curve measurements, electron beam induced current, cross-sectional TEM, Raman spectroscopy, SIMS, and steady-state and time-resolved photoluminescence measurements are presented. It was found that the highest minority carrier lifetime, 2.41 ns, was obtained for T(G) = 780 C, but the lowest interfacial recombination velocity, 1.6 x 10 exp 4, was obtained at 660 C.

  18. Antifungal Activity of Selected Indigenous Pseudomonas and Bacillus from the Soybean Rhizosphere

    Directory of Open Access Journals (Sweden)

    A. F. García

    2009-01-01

    Full Text Available The purpose of this study was to isolate and select indigenous soil Pseudomonas and Bacillus bacteria capable of developing multiple mechanisms of action related to the biocontrol of phytopathogenic fungi affecting soybean crops. The screening procedure consisted of antagonism tests against a panel of phytopathogenic fungi, taxonomic identification, detection by PCR of several genes related to antifungal activity, in vitro detection of the antifungal products, and root colonization assays. Two isolates, identified and designated as Pseudomonas fluorescens BNM296 and Bacillus amyloliquefaciens BNM340, were selected for further studies. These isolates protected plants against the damping-off caused by Pythium ultimum and were able to increase the seedling emergence rate after inoculation of soybean seeds with each bacterium. Also, the shoot nitrogen content was higher in plants when seeds were inoculated with BNM296. The polyphasic approach of this work allowed us to select two indigenous bacterial strains that promoted the early development of soybean plants.

  19. Antagonism of entomopathogenic fungi by Bacillus spp. associated with the integument of cicadellids and delphacids.

    Science.gov (United States)

    Toledo, Andrea; López, Silvina; Aulicino, Mónica; de Remes-Lenicov, Ana María; Balatti, Pedro

    2015-06-01

    Entomopathogenic fungi are potential tools to biocontrol cicadellids and delphacids, two groups of insects that cause extensive damage to agricultural crops. However, bacteria living on the host cuticle may inhibit fungal growth. In the present work, following the molecular characterization of 10 strains of Bacillus isolated from the integument of cicadellids and delphacids, we selected isolates of the fungi Beauveria bassiana and Metarhizium anisopliae that are resistant to the antimicrobials secreted by these bacterial strains. The antagonistic activity of the 10 bacterial isolates belonging to the genus Bacillus (i.e., B. amyloliquefaciens, B. pumilus, and B. subtilis) against 41 isolates of Bea. bassiana and 20 isolates of M. anisopliae was investigated in vitro on tryptic soy agar using the central disk test. With this approach, isolates of Bea. bassiana and M. anisopliae resistant to antagonistic bacteria were identified that can be further developed as biological control agents.

  20. Antifungal activity of selected indigenous pseudomonas and bacillus from the soybean rhizosphere.

    Science.gov (United States)

    León, M; Yaryura, P M; Montecchia, M S; Hernández, A I; Correa, O S; Pucheu, N L; Kerber, N L; García, A F

    2009-01-01

    The purpose of this study was to isolate and select indigenous soil Pseudomonas and Bacillus bacteria capable of developing multiple mechanisms of action related to the biocontrol of phytopathogenic fungi affecting soybean crops. The screening procedure consisted of antagonism tests against a panel of phytopathogenic fungi, taxonomic identification, detection by PCR of several genes related to antifungal activity, in vitro detection of the antifungal products, and root colonization assays. Two isolates, identified and designated as Pseudomonas fluorescens BNM296 and Bacillus amyloliquefaciens BNM340, were selected for further studies. These isolates protected plants against the damping-off caused by Pythium ultimum and were able to increase the seedling emergence rate after inoculation of soybean seeds with each bacterium. Also, the shoot nitrogen content was higher in plants when seeds were inoculated with BNM296. The polyphasic approach of this work allowed us to select two indigenous bacterial strains that promoted the early development of soybean plants.

  1. Influence of doping on the microstructure and kinetic parameters of GaSb-FeGa1.3 eutectics

    Science.gov (United States)

    Mamedov, I. Kh.; Ragimov, R. N.; Khalilova, A. A.; Arasly, D. G.; Aliev, M. I.

    2012-12-01

    Electron microscopy and X-ray spectroscopy analysis of GaSb-FeGa1.3 eutectic composite doped with tellurium atoms is performed. It is established that doping changes the GaSb-FeGa1.3 eutectics microstructure; sizes, shape, and density of FeGa1.3 metallic inclusions; and the interface regions between the matrix and inclusions. Influence of doping on the anisotropy of kinetic parameters is shown.

  2. Bacillus probiotics.

    Science.gov (United States)

    Cutting, Simon M

    2011-04-01

    Bacterial spore formers are being used as probiotic supplements for use in animal feeds, for human dietary supplements as well as in registered medicines. Their heat stability and ability to survive the gastric barrier makes them attractive as food additives and this use is now being taken forward. While often considered soil organisms this conception is misplaced and Bacilli should be considered as gut commensals. This review summarises the current use of Bacillus species as probiotics, their safety, mode of action as well as their commercial applications.

  3. Coherent dynamics of interwell excitons in GaAs/AlxGa1-xAs superlattices

    DEFF Research Database (Denmark)

    Mizeikis, V.; Birkedal, Dan; Langbein, Wolfgang Werner;

    1997-01-01

    Coherent exciton dynamics in a GaAs/AlxGa1-xAs narrow-miniband superlattice is studied by spectrally resolved transient four-wave mixing. Coherent optical properties of the investigated structure are found to be strongly affected by the existence of two different heavy-hole excitonic states. One ...

  4. Data of evolutionary structure change: 1B1GA-1CLMA [Confc[Archive

    Lifescience Database Archive (English)

    Full Text Available 1B1GA-1CLMA 1B1G 1CLM A A KSPEELKGIFEKYAAK-EGDPNQLSKEELKLLLQTEFPS...-- LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSL-----GQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFK...SN CA 464 1CLM A 1CLMA...dbChain> 1CLMA LQDMINEVDADGN HHHHHH 2 1CLM A 1CLMA

  5. Exciton dynamics in GaAs/AlxGa1-xAs quantum wells

    DEFF Research Database (Denmark)

    Litvinenko, K.; Birkedal, Dan; Lyssenko, V. G.

    1999-01-01

    The changes induced in the optical absorption spectrum of a GaAs/AlxGa1-xAs multiple quantum well due to a photoexcited carrier distribution are reexamined. We use a femtosecond pump-probe technique to excite excitons and free electron-hole pairs. We find that for densities up to 10(11) cm(-2...

  6. Binase-like guanyl-preferring ribonucleases are new members of Bacillus PhoP regulon.

    Science.gov (United States)

    Ulyanova, Vera; Vershinina, Valentina; Ilinskaya, Olga; Harwood, Colin R

    2015-01-01

    Extracellular low-molecular weight guanyl-preferring ribonucleases (LMW RNases) of Bacillus sp. comprise a group of hydrolytic enzymes that share highly similar structural and catalytic characteristics with barnase, a ribonuclease from Bacillus amyloliquefaciens, and binase, a ribonuclease from Bacillus intermedius. Although the physical-chemical and catalytic properties of Bacillus guanyl-preferring ribonucleases are very similar, there is considerably more variation in the environmental conditions that lead to the induction of the genes encoding these RNases. Based on structural differences of their genes the guanyl-preferring ribonucleases have been sub-divided into binase-like and barnase-like groups. Here we show the ability of the key regulator of phosphate deficiency response, PhoP, to direct the transcription of the binase-like RNases but not barnase-like RNases. These results, together with our demonstration that binase-like RNases are induced in response to phosphate starvation, allow us to categorise this group of ribonucleases as new members of Bacillus PhoP regulon. In contrast, the barnase-like ribonucleases are relatively insensitive to the phosphate concentration and the environmental conditions that are responsible for their induction, and the regulatory elements involved, are currently unknown.

  7. Infrared probe of the insulator-to-metal transition in Ga1-xMnxAs and Ga1-xBexAs

    Science.gov (United States)

    Chapler, B. C.; Myers, R. C.; Mack, S.; Frenzel, A.; Pursley, B. C.; Burch, K. S.; Singley, E. J.; Dattelbaum, A. M.; Samarth, N.; Awschalom, D. D.; Basov, D. N.

    2011-08-01

    We report infrared studies of the insulator-to-metal transition (IMT) in GaAs doped with either magnetic (Mn) or nonmagnetic acceptors (Be). We observe a resonance with a natural assignment to impurity states in the insulating regime of Ga1-xMnxAs, which persists across the IMT to the highest doping (16%). Beyond the IMT boundary, behavior combining insulating and metallic trends also persists to the highest Mn doping. Be-doped samples, however, display conventional metallicity just above the critical IMT concentration, with features indicative of transport within the host valence band.

  8. Acoustic phonon modes in asymmetric AlxGa1-xN/GaN/AlyGa1-yN quantum wells

    Science.gov (United States)

    Zan, Y. H.; Ban, S. L.; Chai, Y. J.; Qu, Y.

    2017-02-01

    Using an elastic continuum model, the dispersion relations and phonon modes of propagating, confined, half space and interface acoustic phonons in asymmetric AlxGa1-xN/GaN/Al1-yGayN quantum wells (QWs) have been solved theoretically with the varieties of Al components x and y. Contrary to the previous conclusions, some regulations for the existence of the above different acoustic phonons are revealed as well as the transition conditions among these modes are also discussed. With increase of wave vectors, the dispersion relations split into several groups. Because the classification of these groups is related to the eigen frequencies of bulk materials forming QWs, phonon modes in these groups will be confined or propagating in different layers of QWs. Furthermore, the gradients of the dispersion relations' asymptotes are the velocities of longitudinal and the transverse acoustic phonons propagating in bulk materials in turns. The properties of the dispersion relations and their phonon modes are also analyzed in depth based on the cut-off conditions. By the changing of Al components x and y, the bottom of these groups will be modified to adjust eigen frequencies of AlxGa1-xN or Al1-yGayN layers. But the propagation properties of acoustic phonon modes will remain unchanged in each section.

  9. Binding energies of shallow impurities in asymmetric strained wurtzite AlxGa1-xN/ GaN/Aly Ga1-yN quantum wells*

    Institute of Scientific and Technical Information of China (English)

    Ha Sihua; Ban Shiliang; Zhu Jun

    2011-01-01

    The ground state binding energies of hydrogenic impurities in strained wurtzite AlxGa1-xN/GaN/AlyGa1-yN quantum wells are calculated numerically by a variational method. The dependence of the binding energy on well width, impurity location and Al concentrations of the left and right barriers is discussed, including the effect of the built-in electric field induced by spontaneous and piezoelectric polarizations. The results show that the change in binding energy with well width is more sensitive to the impurity position and barrier heights than the barrier widths, especially in asymmetric well structures where the barrier widths and/or barrier heights differ. The binding energy as a function of the impurity position in symmetric and asymmetric structures behaves like a map of the spatial distribution of the ground state wave function of the electron. It is also found that the influence on the binding energy from the Al concentration of the left barrier is more obvious than that of the right barrier.

  10. Electronic structures of GaAs/AlxGa1-xAs quantum double rings

    Directory of Open Access Journals (Sweden)

    Li Shu-Shen

    2006-01-01

    Full Text Available AbstractIn the framework of effective mass envelope function theory, the electronic structures of GaAs/AlxGa1-xAs quantum double rings (QDRs are studied. Our model can be used to calculate the electronic structures of quantum wells, wires, dots, and the single ring. In calculations, the effects due to the different effective masses of electrons and holes in GaAs and AlxGa1-xAs and the valence band mixing are considered. The energy levels of electrons and holes are calculated for different shapes of QDRs. The calculated results are useful in designing and fabricating the interrelated photoelectric devices. The single electron states presented here are useful for the study of the electron correlations and the effects of magnetic fields in QDRs.

  11. High-Gain AlxGa1-xAs/GaAs Transistors For Neural Networks

    Science.gov (United States)

    Kim, Jae-Hoon; Lin, Steven H.

    1991-01-01

    High-gain AlxGa1-xAs/GaAs npn double heterojunction bipolar transistors developed for use as phototransistors in optoelectronic integrated circuits, especially in artificial neural networks. Transistors perform both photodetection and saturating-amplification functions of neurons. Good candidates for such application because structurally compatible with laser diodes and light-emitting diodes, detect light, and provide high current gain needed to compensate for losses in holographic optical elements.

  12. Electrical Activation Studies of Silicon Implanted Al(x)Ga(1-x)N

    Science.gov (United States)

    2005-03-01

    AlxGa1-xN has high cohesion energy which gives this semiconductor the ability to function in caustic environments and reduces its vulnerability to...in caustic or radioactive environments. Finally, group III-nitrides are desirable for use in optoelectronic devices because they have direct band...which sample is which throughout the process. 19. Visually examine the AlN surface for signs of Ga droplets, cracking/ peeling etc. (A good AlN

  13. Composition dependent dynamics of biexciton localization in AlxGa1-xN mixed crystals

    OpenAIRE

    2009-01-01

    We report the localization-dependent dynamics of biexcitons in AlxGa1−xN mixed crystals under exciton resonant excitation at low temperatures. After intense laser excitation, biexcitons rapidly localize into the band-tail states. The formation time of localized biexcitons becomes shorter with increasing Al composition. Both the inhomogeneous linewidth and the binding energy of biexcitons increase with the inhomogeneous linewidth of excitons. The biexciton binding energy is enhanced by the res...

  14. Optimization using the Taguchi method of the industrial fermentation medium for Bacillus amyloliquefaciens fmb50 for surfactin production%Taguchi法优化Bacillus amyloliquefaciens fmb50产surfactin工业发酵培养基

    Institute of Scientific and Technical Information of China (English)

    姚树林; 陆兆新; 吕凤霞; 王昱沣; 别小妹

    2012-01-01

    采用田口方法(Taguchi method)对影响surfactin生产的各因素进行筛选,并对显著因子的水平进行优化后得出最佳配比.统计分析结果表明:玉米粉、硝酸铵和PO34-对其产量影响显著.获得高产工业发酵培养基的配方为:玉米粉35 g/L,硝酸铵为15g/L,尿素6g/L,PO4- 20 mmol/L,Mn2+0.5 mmol/L,Mg2+0.1 mmol/L,Cu2+ 12.8 μmoLL,Fe2+1 μmol/L,Ca20.5 μmol/L.此培养基surfactin产量达2294.28 mg/L,较原有Landy培养基产量提高15%,生产成本降低40%,为实现surfactin的工业化生产提供了基础.%To provide some fundamental data about the industrial scale production of the antimicrobial lipopeptide surfactin, the design of a cheap, high yield and stable industrial medium has been studied. Using the Taguchi method to screeng the main factors affecting the production of surfactin, the levels of the significant factors were optimized in order to achieve maximal surfactin yield. The results showed that torn powder, ammonium nitrate and PO43- all had a significant effect on surfactin production. By further optimizing each factor, the optimal media composition was found to be: corn powder 35 g/L, ammonium nitrate 15 g/L, carbamide 6 g/L, PO43- 20 mmol/L, Mn2+ 0. 5 mmol/L, Mg2+ 0.1 mmol/L, Cu2+ 12. 8 μmol/L, Fe2+ 1 u,mol/L, and Ca2+ 0. 5 μmol/L. This medium composition afforded 2294. 28 mg/L of surfactin, which was 15% higher than the original Landy medium, and the cost was reduced by 40%.

  15. Ferromagnetism and infrared electrodynamics of Ga1-xMnxAs

    Science.gov (United States)

    Chapler, B. C.; Mack, S.; Myers, R. C.; Frenzel, A.; Pursley, B. C.; Burch, K. S.; Dattelbaum, A. M.; Samarth, N.; Awschalom, D. D.; Basov, D. N.

    2013-05-01

    We report on the magnetic and the electronic properties of the prototype dilute magnetic semiconductor Ga1-xMnxAs using infrared (IR) spectroscopy. Trends in the ferromagnetic transition temperature TC with respect to the IR spectral weight are examined using a sum-rule analysis of IR conductivity spectra. We find nonmonotonic behavior of trends in TC with the spectral weight to effective Mn ratio, which suggest a strong double-exchange component to the FM mechanism, and highlights the important role of impurity states and localization at the Fermi level. Spectroscopic features of the IR conductivity are tracked as they evolve with temperature, doping, annealing, As-antisite compensation, and are found only to be consistent with a Mn-induced IB scenario. Furthermore, our detailed exploration of these spectral features demonstrates that seemingly conflicting trends reported in the literature regarding a broad mid-IR resonance with respect to carrier density in Ga1-xMnxAs are in fact not contradictory. Our study thus provides a consistent experimental picture of the magnetic and electronic properties of Ga1-xMnxAs.

  16. First-principles investigation of BAs and BxGa1-xAs alloys

    Institute of Scientific and Technical Information of China (English)

    Xiong De-Ping; Zhou Shou-Li; Wang Qi; Ren Xiao-Min

    2008-01-01

    Using first-principles calculations in the generalized gradient approximation, the electronic properties of BAs and BxGa1-xAs alloys are studied. At the Brillouin-zone centre, the lowest conduction band is the three-degenerate p-like Γ15c state rather than s-like Γ1c state, and the conduction band minimum (CBM) is along the △ line between the Γ and X points-at approximately 11/14(1,0,0)2π/a. With boron content at 0%-18.75%, BxGa1-xAs alloys have a small (2.6 eV) and relatively composition-independent band-gap bowing parameter, the band-gap increases monotonically by ~18meV/B% with increasing boron content. In addition, the formation enthalpies of mixing for BxGa1-xAs alloys with boron content at 6.25% and 12.5% are calculated, and the large formation enthalpies may explain the difficulty in alloying boron to GaAs.

  17. COMPARISON BETWEEN THE PERCENTAGE OF INCIDENCE OF MASTITIS CAUSED BY Bacillus spp. AND Staphylococcus spp. IN WINTER SEASON IN KHARTOUM STATE, SUDAN

    Directory of Open Access Journals (Sweden)

    Reem Rabie MOHAMMED SALIH

    2016-07-01

    Full Text Available This study was conducted in certain area at Khartoum State (Eltebna, Falasteen, Shambat, Hilat Kuku, Elhalfaia, Elsamrab and The University of Khartoum farms in winter season to determine the type of mastitis and to compare between the incidence of mastitis caused by Stapylococcus spps and Bacillus spp. The total number of dairy cows, which were examined in 34 investigated farms, amounted to 500 animals, but the number of positive cows infected with mastitis were 100. The milk samples were collected from cows due to complain of owners from clinical cases of mastitis. Hundred milk samples were collected from apparent cases of mastitis. All mastitic cases were examined by visual examination and palpation of the udder: 55% acute mastitis, 44% chronic mastitis and 1% gangrenous mastitis were diagnosed. Milk samples were cultured in Blood agar and MacConkey´s agar for 24 hours at 37º C. The isolation of Bacillus spp. amounted 74% , these constituted 31% Bacillus coagulans, 11% B. cereus, 9% B. subtilis, 9% B. licheniformis, 4% B. circulans, 2% B. lentus, 3% B. mycoides, 3% B. amyloliquefaciens and 2% B. megaterium. The percentages of acute mastitis caused by B. coagulans was 14%, B. subtilis 8%, B. lichneformes 7% and 2% for every followed Bacillus spp. (B. cereus, B. circulans B. lentus, B. mycoides, B. amyloliquefaciens and B. megaterium. The percentage of chronic mastitis caused by Bacillus spp. were as follows: B. coagulans was 17%, B. cereus 9%, 2% for every Bacillus spp. (B. lichneformes, B. circulans and B. lentus and 1% for every followed Bacillus spp. (B. subtilis, B. mycoides, B. amyloliquefaciens and B. megaterium. Staph aureus and Staph hyicus amounted to 24% and the percentage of chronic mastitis caused by Staph aureus was 44% and that caused by Staph hyicus was 8%. The percentage of acute mastitis caused by each species of Staph was the same 24%. Other bacteria were isolated from mastitic cows Corynebaccterium spp. 1% and Klebsiella

  18. Purificación y caracterización de una œ- amilasa producida por la cepa nativa bacillus sp. bbm1

    OpenAIRE

    2010-01-01

    La cepa Bacillus sp. BBM1, productora de aamilasas, fue aislada a partir de una muestra de suelo de la Universidad Nacional de Colombia sede Medellín. La caracterización morfológica, bioquímica y molecular indica que esta bacteria está filogenéticamente relacionada con las especies B. subtilis o B. amyloliquefaciens. La amilasa producida (BBM1) fue purificada por precipitación con sulfato de amonio y su peso molecular fue estimado en 77.6 kDa por electroforésis SDSPAGE. Esta enzima es complet...

  19. EXOPOLYSACCHARIDE PRODUCTION BY DROUGHT TOLERANT BACILLUS SPP. AND EFFECT ON SOIL AGGREGATION UNDER DROUGHT STRESS

    Directory of Open Access Journals (Sweden)

    Sandhya Vardharajula

    2014-08-01

    Full Text Available Exopolysaccharides (EPS of microbial origin with novel functionality, reproducible physico-chemical properties, are important class of polymeric materials. EPS are believed to protect bacterial cells from dessication, produce biofilms, thus enhancing the cells chances of bacterial colonizing special ecological niches. In rhizosphere, EPS are known to be useful to improve the moisture-holding capacity. Three Bacillus spp. strains identified by 16s rDNA sequence analysis as B. amyloliquefaciens strain HYD-B17; B. licheniformis strain HYTAPB18; B. subtilis strain RMPB44 were studied for the ability to tolerate matric stress and produce EPS under different water potentials. EPS production in all the three Bacillus spp strains increased with increasing water stress indicating correlation between drought stress tolerance and EPS production. Among the isolates, strain HYD-17 showed highest production of EPS. The exopolysaccharide composition of the three strains was further analyzed by HPLC. Drought stress influenced the ratio of sugars in EPS and glucose was found as major sugar in strains HYTAPB18 and RMPB44 whereas raffinose was major sugar found in strain HYD-B17. Inoculation of EPS producing Bacillus spp. strains in soil resulted in good soil aggregation under drought stress conditions at different incubation periods. This study shows that exposure to water stress conditions affects the composition and ratios of sugars in EPS produced by Bacillus spp. strains HYD-B17, HYTAPB18 and RMPB44 influencing abiotic stress tolerance of the microorganisms.

  20. Effect of tin oxide nanoparticle binding on the structure and activity of α-amylase from Bacillus amyloliquefaciens

    Science.gov (United States)

    Jahir Khan, Mohammad; Qayyum, Shariq; Alam, Fahad; Husain, Qayyum

    2011-11-01

    Proteins adsorbed on nanoparticles (NPs) are being used in biotechnology, biosensors and drug delivery. However, understanding the effect of NPs on the structure of proteins is still in a nascent state. In the present paper tin oxide (SnO2) NPs were synthesized by the reaction of SnCl4·5H2O in methanol via the sol-gel method and characterized by x-ray diffraction (XRD), Fourier transform infrared spectroscopy (FT-IR) and transmission electron microscopy (TEM). The binding of these SnO2-NPs with α-amylase was investigated by using UV-vis, fluorescence and circular dichroism (CD) spectroscopic techniques. A strong quenching of tryptophan fluorescence intensity in α-amylase was observed due to formation of a ground state complex with SnO2-NPs. Far-UV CD spectra showed that the secondary structure of α-amylase was changed in the presence of NPs. The Michaelis-Menten constant (Km), was found to be 26.96 and 28.45 mg ml - 1, while Vmax was 4.173 and 3.116 mg ml - 1 min - 1 for free and NP-bound enzyme, respectively.

  1. EFECTO DE LA INOCULACIÓN DE Azospirillum halopraeferens Y Bacillus amyloliquefaciens EN LA GERMINACIÓN DE Prosopis chilensis

    OpenAIRE

    2010-01-01

    Las Bacterias Promotoras de Crecimiento de Plantas (BPCP), son microorganismos fijadores de nitrógeno atmosférico y a su vez producen hormonas que aprovechan las plantas para llevar a cabo su desarrollo. Es importante la utilización de microorganismos benéficos para reducir la fertilización química. La investigación científica ha incrementado la busqueda y aislamiento de BPCP de regiones especificas como son las zonas áridas, ya que estos microorganismos estan adaptados a ambientes extremos. ...

  2. Characterization of antagonistic-potential of two Bacillus strains and their biocontrol activity against Rhizoctonia solani in tomato.

    Science.gov (United States)

    Solanki, Manoj Kumar; Singh, Rajesh Kumar; Srivastava, Supriya; Kumar, Sudheer; Kashyap, Prem Lal; Srivastava, Alok K

    2015-01-01

    To investigate the biocontrol mechanism of two antagonistic Bacillus strains (Bacillus subtilis MB14 and Bacillus amyloliquefaciens MB101), three in vitro antagonism assays were screened and the results were concluded that both strains inhibited Rhizoctonia solani growth in a similar manner by dual culture assay, but the maximum percent of inhibition only resulted with MB101 by volatile and diffusible metabolite assays. Moreover, cell free supernatant (CFS) of MB101 also showed significant (p > 0.05) growth inhibition as compared to MB14, when 10 and 20% CFS mix with the growth medium of R. solani. After in vitro-validation, both strains were evaluated under greenhouse and the results concluded that strain MB101 had significant biocontrol potential as compared to MB14. Strain MB101 was enhanced the plant height, biomass and chlorophyll content of tomato plant through a higher degree of root colonization. In field trials, strain MB101 showed higher lessening in root rot symptoms with significant fruit yield as compare to strain MB14 and infected control. Next to the field study, the presence of four antibiotic genes (srfAA, fenD, ituC, and bmyB) also concluded the antifungal nature of both Bacillus strains. Phylogenetic analysis of protein sequences revealed a close relatedness of three genes (srfAA, fenD, and ituC) with earlier reported sequences of B. subtilis and B. amyloliquefaciens. However, bmyB showed heterogeneity in among both strains (MB14 and MB101) and it may be concluded that higher degree of antagonism, root colonization and different antibiotic producing genes may play an important role in biocontrol mechanism of strain MB101.

  3. Antioxidant and Neuroprotective Effects of Doenjang Prepared with Rhizopus, Pichia, and Bacillus

    Science.gov (United States)

    Kang, Su Jin; Seo, Ji Yeon; Cho, Kye Man; Lee, Chang Kwon; Kim, Jeong Hwan; Kim, Jong-Sang

    2016-01-01

    A new type of doenjang was manufactured by mixing soaked soybean, koji (Rhizopus oryzae), cheonggukjang (Bacillus amyloliquefaciens MJ1-4 and B. amyloliquefaciens EMD17), and Pichia farinosa SY80 as a yeast, salt, and water, followed by fermentation with koji that was made by fermenting whole wheat with R. oryzae. The mixed culture doenjang was designed to have a more palatable flavor and stronger biological activities than the conventional product. The extract of mixed culture doenjang showed higher antioxidant activity than the commercial doenjang as evaluated by the ferric reducing antioxidant power assay although it was not significantly different from the commercial product in 2,2-diphenyl-1-picrylhydrazyl and 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid) radical scavenging activities. Further, the mixed culture doenjang reduced intracellular reactive oxygen species levels and protected cells from glutamate-induced cytotoxicity more efficiently in human hippocampal HT22 neuroblastoma cells than the commercial doenjang. In conclusion, a newly-developed mixed culture doenjang had a strong antioxidant activity in vitro and cultured cell model systems, exhibited a potential to prevent oxidative stress-associated disorders although animal and clinical studies are needed to confirm its in vivo efficacy. PMID:27752498

  4. InGa1−N fibres grown on Au/SiO2 by chemical vapour deposition

    Indian Academy of Sciences (India)

    A Ramos-Carrazco; R García; M Barboza-Flores; R Rangel

    2014-12-01

    The growth of InGa1−N films ( = 0.1 and = 0.2) on a thin gold layer (Au/SiO2) by chemical vapour deposition (CVD) at 650 °C is reported. As a novelty, the use of a Ga–In metallic alloy to improve the indium incorporation in the InGa1−N is proposed. The results of high quality InGa1−N films with a thickness of three micrometres and the formation of microfibres on the surface are presented. A morphological comparison between the InGa1−N and GaN films is shown as a function of the indium incorporation. The highest crystalline InGa1−N films structure was obtained with an indium composition of = 0.20. Also, the preferential growth on the (002) plane over In0.2Ga0.8N was observed by means of X-ray diffraction. The thermoluminescence (TL) of the InGa1−N films after beta radiation exposure was measured indicating the presence of charge trapping levels responsible for a broad TL glow curve with a maximum intensity around 150 °C. The TL intensity was found to depend on composition being higher for = 0.1 and increases as radiation dose increases.

  5. Phonon bottleneck in GaAs/AlxGa1−xAs quantum dots

    Directory of Open Access Journals (Sweden)

    Y. C. Chang

    2015-06-01

    Full Text Available We report low-temperature photoluminescence measurements on highly-uniform GaAs/AlxGa1−xAs quantum dots grown by droplet epitaxy. Recombination between confined electrons and holes bound to carbon acceptors in the dots allow us to determine the energies of the confined states in the system, as confirmed by effective mass calculations. The presence of acceptor-bound holes in the quantum dots gives rise to a striking observation of the phonon-bottleneck effect.

  6. TDDFT calculations for excitation spectra of $In_xGa_{1-x}As$ alloys

    CERN Document Server

    Ning, Zhenhua; Chang, Yia-Chung

    2014-01-01

    We adopted the TDDFT theory and the cluster averaging method to compute the spectra of $\\rm In_xGa_{1-x}As$ with arbitrary concentration $x$. We find great agreement between theoretical and experimental data. The success of this method is mainly because that we approximate the transition matrix elements by the LDA p-matrix elements via meta-generalized gradient approximation(mGGA) which includes the singularity of the type $f_{XC,00}(\\mathbf{q})\\sim 1/q^2 $ as $q\\rightarrow 0$. Thus, Our studies provide some insight into the theoretical calculation of optical spectra of semiconductor alloys.

  7. Optimization of Amylase Production from B. amyloliquefaciens (MTCC 1270) Using Solid State Fermentation.

    Science.gov (United States)

    Saha, Koel; Maity, Sujan; Roy, Sudeshna; Pahan, Koustav; Pathak, Rishija; Majumdar, Susmita; Gupta, Suvroma

    2014-01-01

    Demand for microbial amylase production persists because of its immense importance in wide spectrum industries. The present work has been initiated with a goal of optimization of solid state fermentation condition for amylase using agroindustrial waste and microbial strain like B. amyloliquefaciens (MTCC 1270). In an aim to improve the productivity of amylase, fermentation has been carried out in the presence of calcium (Ca(+2)), Nitrate (NO3 (-)), and chloride ions (Cl(-)) as well as in the presence of D-inositol and mannitol. Amylase needs calcium ion for the preservation of its structure, activity and stability that proves beneficial also for amylase production using solid state fermentation. The inclusion of ions and sugars in the SSF media is promising which can be explained by the protection offered by them against thermal decay of amylase at various incubation periods at 37°C.

  8. Optimization of Amylase Production from B. amyloliquefaciens (MTCC 1270 Using Solid State Fermentation

    Directory of Open Access Journals (Sweden)

    Koel Saha

    2014-01-01

    Full Text Available Demand for microbial amylase production persists because of its immense importance in wide spectrum industries. The present work has been initiated with a goal of optimization of solid state fermentation condition for amylase using agroindustrial waste and microbial strain like B. amyloliquefaciens (MTCC 1270. In an aim to improve the productivity of amylase, fermentation has been carried out in the presence of calcium (Ca+2, Nitrate (NO3−, and chloride ions (Cl− as well as in the presence of D-inositol and mannitol. Amylase needs calcium ion for the preservation of its structure, activity and stability that proves beneficial also for amylase production using solid state fermentation. The inclusion of ions and sugars in the SSF media is promising which can be explained by the protection offered by them against thermal decay of amylase at various incubation periods at 37°C.

  9. Diversity of bacteria of the genus Bacillus on board of international space station.

    Science.gov (United States)

    Alekhova, T A; Zakharchuk, L M; Tatarinova, N Yu; Kadnikov, V V; Mardanov, A V; Ravin, N V; Skryabin, K G

    2015-01-01

    From swabs of surfaces of equipment and air samples of the Russian segment of the International Space Station, nine strains of spore-forming bacteria of the genus Bacillus belonging to the species B. pumilus, B. licheniformis, B. subtilis, B. megaterium, and B. amyloliquefaciens were isolated. The last species of bacilli on the equipment of RS ISS was detected for the first time. For these species of bacilli, there are known strains that can be opportunistic to humans, and their metabolites can cause biodegradation of equipment and materials. B. pumilus found on ISS belongs to the group of bacteria that exhibits a particularly high resistance to adverse environmental conditions, such as dehydration, ultraviolet and gamma radiation, and chemical disinfection.

  10. Observations of flow in Inx Ga1-xAs multilayers

    Science.gov (United States)

    Korte, S.; McLaughlin, K. K.; Farrer, I.; Clegg, W. J.

    2008-08-01

    Work elsewhere has shown that the hardnesses of coherent InxGa1-xAs multilayer structures in which the misfit stresses are controlled by varying the indium content in each layer are influenced by the thicknesses and the coherency strains in the layers. These results have been interpreted in terms of the length-scale for flow being greater than the layer thickness and associated with deformation size effects. However, nanoindentation of InxGa1-x As suggests an influence of the flow stress of the individual layers on the overall multilayer flow stress. Consequently, initiation of flow in the weaker layer is expected. A deformed multilayer has been characterized by measurement of the lattice rotations measured from energy-filtered convergent beam electron diffraction (CBED) patterns recorded in scanning transmission electron microscopy (STEM) mode. Based on the movement of Kikuchi lines as a result of rotations of the lattice the local orientation of the crystal can be extracted, allowing the local orientations to be estimated. The small probe-size in CBED of ~1 nm used here ensures the region sampled is smaller than the thickness of the individual layers. These measurements have been used to construct a map of the axes of rotation in the lattice which demonstrates the ability to distinguish the individual layers.

  11. Structural and electronic properties of Fe(AlxGa1-x)3 system

    Science.gov (United States)

    Mondal, Debashis; Kamal, C.; Banik, Soma; Bhakar, Ashok; Kak, Ajay; Das, Gangadhar; Reddy, V. R.; Chakrabarti, Aparna; Ganguli, Tapas

    2016-10-01

    FeGa3 is a well known intermetallic semiconductor with a band gap, which is induced by d-p hybridization. In this work, we present the results of experimental and theoretical studies on the effect of Al substitution in FeGa3, obtained by X-ray diffraction (XRD) study, temperature dependent resistivity measurement, room temperature Mössbauer measurement, and density functional theory based electronic structure calculations. It is observed that up to x = 0.178 in Fe(AlxGa1-x)3, which is the maximum range studied in this work, Al substitution reduces the lattice parameters a and c, preserving the parent tetragonal P42/mnm crystal structure of FeGa3. Rietveld refinement of the XRD data shows that Al atoms replace Ga atoms located at the 8j sites in FeGa3. A comparison of the trends of the lattice parameters and energy band gap obtained from the calculations and experimental measurements also confirms that Al atoms primarily replace the Ga atoms in the 8j site. The band gap of Fe(AlxGa1-x)3 for x = 0.178 is reduced by ≈24% as compared to FeGa3. The system thus has a lot of promise for applications in band gap engineering in infra-red devices.

  12. Magnetic properties of the layered III-VI diluted magnetic semiconductor Ga1−xFexTe

    Directory of Open Access Journals (Sweden)

    T. M. Pekarek

    2016-05-01

    Full Text Available Magnetic properties of single crystalline Ga1−xFexTe (x = 0.05 have been measured. GaTe and related layered III-VI semiconductors exhibit a rich collection of important properties for THz generation and detection. The magnetization versus field for an x = 0.05 sample deviates from the linear response seen previously in Ga1−xMnxSe and Ga1−xMnxS and reaches a maximum of 0.68 emu/g at 2 K in 7 T. The magnetization of Ga1−xFexTe saturates rapidly even at room temperature where the magnetization reaches 50% of saturation in a field of only 0.2 T. In 0.1 T at temperatures between 50 and 400 K, the magnetization drops to a roughly constant 0.22 emu/g. In 0 T, the magnetization drops to zero with no hysteresis present. The data is consistent with Van-Vleck paramagnetism combined with a pronounced crystalline anisotropy, which is similar to that observed for Ga1−xFexSe. Neither the broad thermal hysteresis observed from 100-300 K in In1−xMnxSe nor the spin-glass behavior observed around 10.9 K in Ga1−xMnxS are observed in Ga1−xFexTe. Single crystal x-ray diffraction data yield a rhombohedral space group bearing hexagonal axes, namely R3c. The unit cell dimensions were a = 5.01 Å, b = 5.01 Å, and c = 17.02 Å, with α = 90°, β = 90°, and γ = 120° giving a unit cell volume of 369 Å3.

  13. Isolation and molecular characterization of thermostable phytase from Bacillus subtilis (BSPhyARRMK33).

    Science.gov (United States)

    Reddy, Chinreddy Subramanyam; Achary, V Mohan Murali; Manna, Mrinalini; Singh, Jitender; Kaul, Tanushri; Reddy, Malireddy K

    2015-03-01

    The thermostable phytase gene was isolated from Bacillus subtilis ARRMK33 (BsPhyARRMK33). The gene has an ORF of 1152 bp and that encodes a protein of 383 amino acids. Sequence analysis showed high homology with Bacillus sp. phytase proteins, but no similarity was found with other phytases. SDS-PAGE analysis exhibited a predicted molecular mass of 42 kDa. Homology modeling of BsPhyARRMK33 protein based on Bacillus amyloliquefaciens crystal structure disclosed its β-propeller structure. BsPhyARRMK33 recombinant plasmid in pET-28a(+) was expressed in Rosetta gami B DE3 cells and the maximum phytase activity 15.3 U mg(-1) obtained. The enzyme exhibits high thermostability at various temperatures and broad pH ranges. The recombinant protein retained 74% of its original activity after incubation at 95 °C for 10 min. In the presence of Ca(2+), the recombinant phytase activity was maximal where as it was inhibited by EDTA. The optimal pH and temperature for the recombinant phytase activity is achieved at 7.0 and 55 °C, respectively. Thermostable nature and wide range of pH are promising features of recombinant BsPhyARRMK33 protein that may be employed as an efficient alternative to commercially known phytases and thereby alleviate environmental eutrophication.

  14. Spectroscopic Characterization of GaAs and AlxGa1 – xAs / AlyGa1 – yAs Quantum Well Heterostructures

    Directory of Open Access Journals (Sweden)

    Mirgender Kumar

    2013-07-01

    Full Text Available This work presents the results of the characterization of GaAs and AlxGa1 – xAs / AlyGa1 – yAs quantum well hetero-structures growth by MOVPE system. The main goal is to explore the ability of characterization techniques for multilayer structures like quantum wells. The characterization was performed using photoreflectance spectroscopy, surface photovoltaic spectroscopy and X-ray diffraction. The experimental results are verified by numerical simulation.

  15. Characterization of Bacillus isolates of potato rhizosphere from andean soils of Peru and their potential PGPR characteristics

    Directory of Open Access Journals (Sweden)

    Pamela Calvo

    2010-12-01

    Full Text Available Bacillus spp. are well known rhizosphere residents of many crops and usually show plant growth promoting (PGP activities that include biocontrol capacity against some phytopatogenic fungi. Potato crops in the Andean Highlands of Peru face many nutritional and phytophatogenic problems that have a significant impact on production. In this context is important to investigate the natural presence of these microorganisms in the potato rhizosphere and propose a selective screening to find promising PGP strains. In this study, sixty three Bacillus strains isolated from the rhizosphere of native potato varieties growing in the Andean highlands of Peru were screened for in vitro antagonism against Rhizoctonia solani and Fusarium solani. A high prevalence (68% of antagonists against R. solani was found. Ninety one percent of those strains also inhibited the growth of F. solani. The antagonistic strains were also tested for other plant growth promotion activities. Eighty one percent produced some level of the auxin indole-3-acetic acid, and 58% solubilized tricalcium phosphate. Phylogenetic analysis revealed that the majority of the strains belonged to the B. amyloliquefaciens species, while strains Bac17M11, Bac20M1 and Bac20M2 may correspond to a putative new Bacillus species. The results suggested that the rhizosphere of native potatoes growing in their natural habitat in the Andes is a rich source of Bacillus fungal antagonists, which have a potential to be used in the future as PGP inoculants to improve potato crop.

  16. Characterization of Bacillus isolates of potato rhizosphere from andean soils of Peru and their potential PGPR characteristics.

    Science.gov (United States)

    Calvo, Pamela; Ormeño-Orrillo, Ernesto; Martínez-Romero, Esperanza; Zúñiga, Doris

    2010-10-01

    Bacillus spp. are well known rhizosphere residents of many crops and usually show plant growth promoting (PGP) activities that include biocontrol capacity against some phytopatogenic fungi. Potato crops in the Andean Highlands of Peru face many nutritional and phytophatogenic problems that have a significant impact on production. In this context is important to investigate the natural presence of these microorganisms in the potato rhizosphere and propose a selective screening to find promising PGP strains. In this study, sixty three Bacillus strains isolated from the rhizosphere of native potato varieties growing in the Andean highlands of Peru were screened for in vitro antagonism against Rhizoctonia solani and Fusarium solani. A high prevalence (68%) of antagonists against R. solani was found. Ninety one percent of those strains also inhibited the growth of F. solani. The antagonistic strains were also tested for other plant growth promotion activities. Eighty one percent produced some level of the auxin indole-3-acetic acid, and 58% solubilized tricalcium phosphate. Phylogenetic analysis revealed that the majority of the strains belonged to the B. amyloliquefaciens species, while strains Bac17M11, Bac20M1 and Bac20M2 may correspond to a putative new Bacillus species. The results suggested that the rhizosphere of native potatoes growing in their natural habitat in the Andes is a rich source of Bacillus fungal antagonists, which have a potential to be used in the future as PGP inoculants to improve potato crop.

  17. Synthesis of AgGa1-xInxSe2 Polycrystalline Materials

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    AgGa1-xInxSe2 polycrystals were synthesized by the method of mechanical oscillation and temperature oscillation. X-ray diffraction spectra of polycrystal powder are conformable with the JCPDS cards. Lattice constants a and c calculated from the XRD were found to obey Vegard's law. The melting point of AgGa0.8In0.2Se2 obtained by means of differential scanning calorimetry (DSC) is 796.53 ℃. The DSC curve also show that there are no other transformation points below the melting point. The results indicate that polycrystalline materials synthesized by the method mentioned above are high-quality and can be used to grow single crystals by the vertical Bridgman technology.

  18. (InxGa1-x)2O3 alloys for transparent electronics

    Science.gov (United States)

    Peelaers, Hartwin; Steiauf, Daniel; Varley, Joel B.; Janotti, Anderson; Van de Walle, Chris G.

    2015-08-01

    (InxGa1-x)2O3 alloys show promise as transparent conducting oxides. Using hybrid density functional calculations, band gaps, formation enthalpies, and structural parameters are determined for monoclinic and bixbyite crystal structures. In the monoclinic phase the band gap exhibits a linear dependence on alloy concentration, whereas in the bixbyite phase a large band-gap bowing occurs. The calculated formation enthalpies show that the monoclinic structure is favorable for In compositions up to 50% and bixbyite for larger compositions. This is caused by In strongly preferring sixfold oxygen coordination. The formation enthalpy of the 50:50 monoclinic alloy is much lower than the formation enthalpy of the 50:50 bixbyite alloy and also lower than most monoclinic alloys with lower In concentration; these trends are explained in terms of local strain. Consequences for experiment and applications are discussed.

  19. Properties of (Ga1-x In x )2O3 over the whole x range

    Science.gov (United States)

    Maccioni, M. B.; Ricci, F.; Fiorentini, V.

    2016-06-01

    Using density-functional ab initio theoretical techniques, we study (Ga1-x In x )2O3 in both its equilibrium structures (monoclinic β and bixbyite) and over the whole range of composition. We establish that the alloy exhibits a large and temperature-independent miscibility gap. On the low-x side, the favored phase is isostructural with β -Ga2O3; on the high-x side, it is isostructural with bixbyite In2O3. The miscibility gap opens between approximately 15% and 55% In content for the bixbyite alloy grown epitaxially on In2O3, and 15% and 85% In content for the free-standing bixbyite alloy. The gap, volume and band offsets to the parent compound also exhibit anomalies as function of x. Specifically, the offsets in epitaxial conditions are predominantly type-B staggered, but have opposite signs in the two end-of-range phases.

  20. X-ray photoemission spectra for Al(x)Ga(1-x)As

    Science.gov (United States)

    Ireland, P. J.; Kazmerski, L. L.; Fisher, R. F.

    1984-06-01

    X-ray photoelectron spectroscopy (XPS) is used in both a qualitative and quantitative fashion to study the Al(x)Ga(1-x)As alloy. Gallium and aluminum atoms are always bonded to the arsenic atom. As the concentration of Al increases, a notable shift in the As-3d level could be expected as Ga and Al both have different electronegativities. Spectra taken on molecular beam epitaxially grown samples do not show this shift in the As-3d core level. The composition of the films have been measured with an electron probe, and these results agree very well with the XPS quantitative data. Standard spectra are presented for films with x = 0.16, 0.23, 0.32, 0.46, and 0.65.

  1. MnxGa1-x nanodots with high coercivity and perpendicular magnetic anisotropy

    Science.gov (United States)

    Karel, J.; Casoli, F.; Lupo, P.; Celegato, F.; Sahoo, R.; Ernst, B.; Tiberto, P.; Albertini, F.; Felser, C.

    2016-11-01

    A MnxGa1-x (x = 0.70) epitaxial thin film with perpendicular magnetic anisotropy and a large coercivity (μ0Hc = 1 T) was patterned into nanodots using a combined self-assembly nanolithography and plasma etching procedure. Nanostructuring is achieved by self-assembly of polystyrene nanospheres acting as a mask on the magnetic film. This procedure allows easy patterning of a large area although introduced some chemical disorder, which resulted in a soft magnetic component in the magnetic hysteresis loops. However, chemical order was recovered after vacuum annealing at low temperature. The resulting nanodots retain the properties of the original film, i.e. magnetization oriented perpendicular to the particle and large coercivity. Our results suggest this lithography procedure could be a promising direction for nanostructuring tetragonal Heusler alloys.

  2. Bond length variation in Ga1-xInxAs crystals from the Tersoff potential

    Science.gov (United States)

    Titantah, J. T.; Lamoen, D.; Schowalter, M.; Rosenauer, A.

    2007-06-01

    In this work we show that a reparametrized Tersoff potential accurately reproduces the bond length variations observed in ternary Ga1-xInxAs mixed crystals. The reparametrization is based on accurate first-principles electronic structure calculations. Previous parametrizations of the Tersoff potential for GaAs and InAs structures, although they accurately reproduce the properties of the zinc-blende GaAs and InAs crystals, are shown to be unable to reproduce the bond length variations in these mixed crystals. In addition to correcting the bond length inconsistencies, the new set of parameters is also shown to yield the elastic constants of GaAs and InAs that agree fairly well with measurements and to reproduce accurately their respective melting temperature.

  3. X-ray Reciprocal Space Mapping of Graded Al x Ga1 - x N Films and Nanowires.

    Science.gov (United States)

    Stanchu, Hryhorii V; Kuchuk, Andrian V; Kladko, Vasyl P; Ware, Morgan E; Mazur, Yuriy I; Zytkiewicz, Zbigniew R; Belyaev, Alexander E; Salamo, Gregory J

    2016-12-01

    The depth distribution of strain and composition in graded Al x Ga1 - x N films and nanowires (NWs) are studied theoretically using the kinematical theory of X-ray diffraction. By calculating [Formula: see text] reciprocal space maps (RSMs), we demonstrate significant differences in the intensity distributions from graded Al x Ga1 - x N films and NWs. We attribute these differences to relaxation of the substrate-induced strain on the NWs free side walls. Finally, we demonstrate that the developed X-ray reciprocal space map model allows for reliable depth profiles of strain and Al composition determination in both Al x Ga1 - x N films and NWs.

  4. Detection Wavelength of Strained Inx Ga1-x As/GaAs Very-Long-Wavelength Quantum Well Infrared Photodetectors

    Institute of Scientific and Technical Information of China (English)

    XIONG Da-Yuan; LI Ning; LI Zhi-Feng; ZHEN Hong-Lou; LU Wei

    2007-01-01

    Detection wavelength is one of the key performance indices of infrared photodetectors. We study the character of detection wavelength of the strained InxGa1-xAs/GaAs very-long-wavelength (>12μm) quantum well infrared photodetectors (VLW-QWIPs) characterized by the photoluminescence (PL) and photocurrent (PC) measurements. Based on the theoretical calculation and experimental data, we have built a practical model for the InxGa1-xAs/GaAs strained VLW-QWIPs, from which the interband transitions, intersubband transition and peak detection wavelength can be determined. Afterwards, the dependences of detection wavelength and device operation mode on the In mole fraction and InxGa1-xAs well width are presented, which will be helpful for device design and optimization.

  5. Effects of varying indium composition on the thermoelectric properties of In x Ga1- x Sb ternary alloys

    Science.gov (United States)

    Nirmal Kumar, V.; Arivanandan, M.; Koyoma, T.; Udono, H.; Inatomi, Y.; Hayakawa, Y.

    2016-10-01

    In x Ga1- x Sb ( x = 0-1), a III-V ternary alloy, was grown by melt solidification process. The effects of varying indium composition on the thermoelectric properties of In x Ga1- x Sb polycrystals were studied for the first time. The segregations of indium and gallium elements were observed in the grown crystals, and the defects present in crystals were revealed by etching process. Room-temperature Raman measurement revealed that the dominant optical modes of phonon vibrations in InSb and GaSb binaries were suppressed in In x Ga1- x Sb ternaries. The in-phase vibrations of acoustic mode phonons were scattered more effectively in In x Ga1- x Sb by the present defects, and the relative value of lattice thermal conductivity was reduced. Thus, the thermal conductivity of InSb and GaSb binaries was drastically reduced in In x Ga1- x Sb by alloy scattering. InSb indicated the highest ZT 0.51 because of its higher power factor 70 µW/cmK2. Next to InSb, In0.8Ga0.2Sb had higher ZT value of 0.29 at 600 K among the In x Ga1- x Sb ternaries. The ZT of In0.8Ga0.2Sb was increased about 30 times than that of GaSb by the increase of power factor as well as the decrease of thermal conductivity.

  6. Computational Investigation of InxGa1-xN/InN Quantum-Dot Intermediate-Band Solar Cell

    Institute of Scientific and Technical Information of China (English)

    DENG Qing-Wen; WANG Zhan-Guo; HOU Xun; WANG Xiao-Liang; YANG Cui-Bai; XIAO Hong-Ling; WANG Cui-Mei; YIN Hai-Bo; HOU Qi-Feng; BI Yang; LI Jin-Min

    2011-01-01

    An InxGa1-xN/InN quantum-dot intermediate-band solar cell is calculated by means of solving the Schrodinger equation according to the Kronig-Penney model. Based on particular assumptions, the power conversion efficiency is worked out. The results reveal that the InxGa1-xN/InN quantum-dot intermediate-band solar cell manifests much larger power conversion efficiency than that of p-n junction solar cells, and the power conversion efficiency strongly depends on the size of the quantum dot and the interdot distance.

  7. Evaluation and Selection of Bacillus Species Based on Enzyme Production, Antimicrobial Activity, and Biofilm Synthesis as Direct-Fed Microbial Candidates for Poultry

    Science.gov (United States)

    Latorre, Juan D.; Hernandez-Velasco, Xochitl; Wolfenden, Ross E.; Vicente, Jose L.; Wolfenden, Amanda D.; Menconi, Anita; Bielke, Lisa R.; Hargis, Billy M.; Tellez, Guillermo

    2016-01-01

    Social concern about misuse of antibiotics as growth promoters (AGP) and generation of multidrug-resistant bacteria have restricted the dietary inclusion of antibiotics in livestock feed in several countries. Direct-fed microbials (DFM) are one of the multiple alternatives commonly evaluated as substitutes of AGP. Sporeformer bacteria from the genus Bacillus have been extensively investigated because of their extraordinary properties to form highly resistant endospores, produce antimicrobial compounds, and synthesize different exogenous enzymes. The purpose of the present study was to evaluate and select Bacillus spp. from environmental and poultry sources as DFM candidates, considering their enzyme production profile, biofilm synthesis capacity, and pathogen-inhibition activity. Thirty-one Bacillus isolates were screened for in vitro relative enzyme activity of amylase, protease, lipase, and phytase using a selective media for each enzyme, with 3/31 strains selected as superior enzyme producers. These three isolates were identified as Bacillus subtilis (1/3), and Bacillus amyloliquefaciens (2/3), based on biochemical tests and 16S rRNA sequence analysis. For evaluation of biofilm synthesis, the generation of an adherent crystal violet-stained ring was determined in polypropylene tubes, resulting in 11/31 strains showing a strong biofilm formation. Moreover, all Bacillus strains were evaluated for growth inhibition activity against Salmonella enterica serovar Enteritidis (26/31), Escherichia coli (28/31), and Clostridioides difficile (29/31). Additionally, in previous in vitro and in vivo studies, these selected Bacillus strains have shown to be resistant to different biochemical conditions of the gastrointestinal tract of poultry. Results of the present study suggest that the selection and consumption of Bacillus-DFM, producing a variable set of enzymes and antimicrobial compounds, may contribute to enhanced performance through improving nutrient digestibility

  8. Ion-implantation-induced amorphization of InxGa1-xP alloys as functions of stoichiometry and temperature

    Science.gov (United States)

    Hussain, Z. S.; Wendler, E.; Wesch, W.; Schnohr, C. S.; Ridgway, M. C.

    2016-05-01

    Rutherford Backscattering Spectrometry/Channeling and Extended X-ray Absorption Fine Structure measurements have been combined to investigate the amorphization of InxGa1-xP alloys at 15 and 300 K for selected stoichiometries representative of the entire stoichiometric range. The amorphization kinetics differs considerably for the two temperatures: at 15 K, the amorphization kinetics of InxGa1-xP is intermediate between the two binary extremes while at 300 K, InxGa1-xP is more easily amorphized than both InP and GaP. Direct impact and stimulated amorphization both contribute to the amorphization process at 15 K. Dynamic annealing via thermally induced Frenkel pair recombination reduces the influence of direct impact amorphization at 300 K such that the stimulated amorphization is dominant. At this temperature, stimulated amorphization in ternary InxGa1-xP alloys is supported by the structural disorder inherent from the bimodal bond length distribution.

  9. Mapping by interspecies transformation experiments of several ribosomal protein genes near the replication origin of Bacillus subtilis chromosome.

    Science.gov (United States)

    Osawa, S; Tokui, A; Saito, H

    1978-08-17

    Bacillus subtilis 168 was transformed with DNAs from B. amyloliquefaciens K or B. licheniformis IAM 11054. These two species show a considerable difference in ribosomal proteins from B. subtilis. Analyses of the transformants indicated that the genes for 16 proteins, S3, S5, S8, S12, S17, S19, BL1, BL5, BL6, BL8, BL14, BL16, BL17, BL22, BL23 and BL25 are located in the cysA-str-spc region on B. subtilis chromosome. The genes for 10 proteins, S4, S6, S13, S16, S20, BL15, BL18, BL20, BL24 and BL28 could not be found in this region in the present experiments.

  10. Antimicrobial Activity of Bacillus sp. Natural Isolates and Their Potential Use in the Biocontrol of Phytopathogenic Bacteria

    Directory of Open Access Journals (Sweden)

    Tanja Berić

    2012-01-01

    Full Text Available Screening of 203 Bacillus sp. natural isolates for antimicrobial activity against phytopathogenic bacteria showed that 127 tested strains inhibit at least one sensitive strain, which illustrates their potential use as biocontrol agents. Among them, 104 isolates showed significant antagonism against Xanthomonas oryzae pv. oryzae, and only one of these (VPS50.2 synthesizes bacteriocin. An additional screening tested whether 51 isolates contained genes involved in the biosynthesis of lipopeptides of the iturin and surfactin classes. Results show that 33 isolates harbour the operon for iturin biosynthesis, and six of them carry the sfp gene, responsible for the biosynthesis of surfactin. Lipopeptide purification from the supernatant of isolate SS12.9 (identified as B. subtilis or B. amyloliquefaciens was performed using ethyl acetate extraction, ultrafiltration and reversed phase HPLC. Mass spectrometry analysis confirmed that isolate SS12.9 produces a substance of the iturin class with potential for biocontrol of X. oryzae pv. oryzae.

  11. Phonon-drag magnetothermopower oscillations in GaAs/AsxGa1-xAs heterojunctions

    Science.gov (United States)

    Fromhold, T. M.; Butcher, P. N.; Qin, G.; Mulimani, B. G.; Oxley, J. P.; Gallagher, B. L.

    1993-08-01

    The tensor M--> which determines the heat flux U=M-->E in a weak electric field E is calculated for a two-dimensional electron gas in a perpendicular magnetic field B. The dominant phonon-drag contribution is calculated using Boltzmann transport, allowing for the two-dimensional (2D) character of the electron gas. The Landau levels are taken to have Gaussian line shapes with the rms level width γ=CB1/2 where C is the only adjustable parameter. Setting C=0.5 meV T-1/2 gives good agreement with new experimental values of Myx obtained for GaAs/AlxGa1-xAs heterojunctions when B varies between 2 and 10 T and the temperature varies between 1 and 5 K. Myx is negative and contains strong magneto-oscillations in phase with the density of states at the Fermi level. The model also predicts Mxx=0, whereas experiment gives peak values of ||Mxx|| up to 60% of those of ||Myx||. We demonstrate that setting Mxx=0 in the calculation has little effect on the predicted thermopower component Sxx but yields poor approximations to the experimental values of Syx.

  12. Luminescence studies in InxGa1-xN epitaxial layers with different indium contents

    Science.gov (United States)

    Wu, T. Y.; Chang, C. C.; Tiong, K. K.; Lee, Y. C.; Hu, S. Y.; Lin, L. Y.; Lin, T. Y.; Feng, Z. C.

    2013-08-01

    The optical properties of InxGa1-xN epitaxial layers (x = 0.02, 0.04, 0.11, 0.15, 0.30 and 0.33) grown by metalorganic chemical vapor deposition (MOCVD) have been investigated by temperature-dependent photoluminescence (PL) measurement. The surface morphologies of InGaN samples are studied by scanning electron microscopy (SEM) images. The PL feature at 12 K has shown an increase in full-width at half-maximum (FWHM) with increasing In content. An anomalous S-shaped temperature dependence of the PL peak energy exhibited by InGaN films with higher In content enabled the evaluation of the exciton localization energy. The broadened FWHM and S-shaped emission shift are attributed to larger compositional fluctuation due to compositional inhomogeneity of In. Additionally, the luminescence mechanism relating to the phase separation has to be considered for the much larger FWHM value and the pronounced S-shaped behavior for the InGaN samples with In content of 0.30 and 0.33.

  13. Raman scattering by phonons of Ga1-xAlxSb mixed crystals

    Science.gov (United States)

    Berdekas, D.

    2013-06-01

    We present calculations of the Raman scattering spectra by the long-wavelength vibrations of Ga1-xAlxSb mixed crystals for three different cation concentrations. Each mixed crystal is approached using a primitive cell 64 times larger than the primitive cell of the bulk constituents GaSb and AlSb. The phonon modes are calculated on the basis of an 11 parameter Rigid Ion Model and the Raman spectra are calculated using the Bond Polarizability Model (BPM), away from resonance conditions. The parameters of this model (BPM) are not arbitrarily approximated but we have obtained them on the basis of certain relations, involving directly measurable quantities, such as dielectric and elastooptic constants of the bulk crystal. It is shown that for small concentrations the Al ions are not randomly distributed over the whole crystal but almost all tend to concentrate in neighboring lattice planes. Further, we have reproduced the Raman spectra close to resonance conditions, assuming that the value of the first order polarizability of AlSb is increased by an amount of 50% close to resonance conditions. Finally it is shown that disorder produces asymmetric Raman lines spectra with the intensities of the two strongest peaks in the optic frequency ranges of the bulk constituents being concentration dependent.

  14. Biocontrol of geosmin-producing Streptomyces spp. by two Bacillus strains from Chinese liquor.

    Science.gov (United States)

    Zhi, Yan; Wu, Qun; Du, Hai; Xu, Yan

    2016-08-16

    Streptomyces spp. producing geosmin have been regarded as the most frequent and serious microbial contamination causing earthy off-flavor in Chinese liquor. It is therefore necessary to control the Streptomyces community during liquor fermentation. Biological control, using the native microbiota present in liquor making, appears to be a better solution than chemical methods. The objective of this study was to isolate native microbiota antagonistic toward Streptomyces spp. and then to evaluate the possible action mode of the antagonists. Fourteen Bacillus strains isolated from different Daqu (the fermentation starter) showed antagonistic activity against Streptomyces sampsonii, which is one of the dominant geosmin producers. Bacillus subtilis 2-16 and Bacillus amyloliquefaciens 1-45 from Maotai Daqu significantly inhibited the growth of S. sampsonii by 57.8% and 84.3% respectively, and effectively prevented the geosmin production in the simulated fermentation experiments (inoculation ratio 1:1). To probe the biocontrol mode, the ability of strain 2-16 and 1-45 to produce antimicrobial metabolites and to reduce geosmin in the fermentation system was investigated. Antimicrobial substances were identified as lipopeptides by ultra-performance liquid chromatography tandem electrospray ionization/quadrupole-time-of-flight mass spectrometry (UPLC-ESI/Q-TOF MS) and in vitro antibiotic assay. In addition, strains 2-16 and 1-45 were able to remove 45% and 15% of the geosmin respectively in the simulated solid-state fermentation. This study highlighted the potential of biocontrol, and how the use of native Bacillus species in Daqu could provide an eco-friendly method to prevent growth of Streptomyces spp. and geosmin contamination in Chinese liquor fermentation.

  15. Biocontrol Characteristics of Bacillus Species in Suppressing Stem Rot of Grafted Cactus Caused by Bipolaris cactivora

    OpenAIRE

    Sooil Bae; Sang Gyu Kim; Young Ho Kim

    2013-01-01

    One of the most important limiting factors for the production of the grafted cactus in Korea is the qualitative and quantitative yield loss derived from stem rots especially caused by Bipolaris cactivora. This study is aimed to develop microbial control agents useful for the control of the bipolaris stem rot. Two bacteria (GA1-23 and GA4-4) selected out of 943 microbial isolates because of their strong antibiotic activity against B. cactivora were identified as Bacillus subtilis and B. amylol...

  16. Electron beam source molecular beam epitaxial growth of analog graded Al(x)Ga(1-x)As ballistic transistors

    Science.gov (United States)

    Malik, Roger J.; Levi, Anthony F. J.

    1988-01-01

    A new method has been developed for the growth of graded band-gap Al(x)Ga(1-x)As alloys by molecular beam epitaxy which is based upon electron beam evaporation of the group III elements. The metal fluxes are measured and feedback controlled using a modulated ion gauge sensor. The system is computer controlled which allows precise programming of the Ga and Al evaporation rates. The large dynamic response of the metal sources enables growth of variable band-gap III-V alloys with arbitrary composition profiles. This new technique is demonstrated by synthesis of analog graded Al(x)Ga(1-x)As unipolar ballistic electron transistors.

  17. Average and Local Crystal Structures of (Ga(1-x)Znx)(N(1-x)Ox) Solid Solution Nanoparticles.

    Science.gov (United States)

    Feygenson, Mikhail; Neuefeind, Joerg C; Tyson, Trevor A; Schieber, Natalie; Han, Wei-Qiang

    2015-12-07

    We report a comprehensive study of the crystal structure of (Ga(1-x)Znx)(N(1-x)Ox) solid solution nanoparticles by means of neutron and synchrotron X-ray scattering. In our study, we used four different types of (Ga(1-x)Znx)(N(1-x)Ox) nanoparticles, with diameters of 10-27 nm and x = 0.075-0.51, which show energy band gaps from 2.21 to 2.61 eV. Rietveld analysis of the neutron diffraction data revealed that the average crystal structure is hexagonal wurtzite (space group P63mc) for the larger nanoparticles, while the crystal structure of smaller nanoparticles is disordered hexagonal. Pair-distribution-function analysis found that the intermediate crystal structure retains a "motif" of the average one; however, the local structure is more disordered. The implications of disorder on the reduced energy band gap are discussed.

  18. Isolation, screening and identification of Bacillus spp. as direct-fed microbial candidates for aflatoxin B1 biodegradation

    Institute of Scientific and Technical Information of China (English)

    Rosario Galarza-Seeber; Juan David Latorre; Xochitl Hernandez-Velasco; Amanda Drake Wolfenden; Lisa Renee Bielke; Anita Menconi; Billy Marshall Hargis; Guillermo Tellez

    2015-01-01

    To evaluate the ability of Bacillus spp. as direct-fed microbials (DFM) to biodegrade aflatoxin B1 (AFB1) by using an in vitro digestive model simulating in vivo conditions. Methods: Sixty-nine Bacillus isolates were obtained from intestines, and soil samples were screened by using a selective media method against 0.25 and 1.00 µg/mL of AFB1 in modified Czapek-Dox medium. Plates were incubated at 37 °C and observed every two days for two weeks. Physiological properties of the three Bacillus spp. candidates were characterized biochemically and by 16S rRNA sequence analyzes for identification. Tolerance to acidic pH, osmotic concentrations of NaCl, bile salts were tested, and antimicrobial sensitivity profiles were also determined. Bacillus candidates were individually sporulated by using a solid fermentation method and combined. Spores were incorporated into 1 of 3 experimental feed groups: 1) Negative control group, with unmedicated starter broiler feed without AFB1; 2) Positive control group, with negative control feed contaminated with 0.01% AFB1; 3) DFM treated group, with positive control feed supplemented with 109 spores/g. After digestion time (3:15 h), supernatants and digesta were collected for high-performance liquid chromatography fluorescence detection analysis by triplicate. Results: Three out of those sixty-nine DFM candidates showed ability to biodegrade AFB1 in vitro based on growth as well as reduction of fluorescence and area of clearance around each colony in modified Czapek-Dox medium which was clearly visible under day light after 48 h of evaluation. Analysis of 16S-DNA identified the strains as Bacillus amyloliquefaciens, Bacillus megaterium and Bacillus subtilis. The three Bacillus strains were tolerant to acidic conditions (pH 2.0), tolerant to a high osmotic pressure (NaCl at 6.5%), and were able to tolerate 0.037%bile salts after 24 h of incubation. No significant differences (P > 0.05) were observed in the concentrations of AFB1 in

  19. Isolation, screening and identifi cation of Bacillus spp. as direct-fed microbial candidates for aflatoxin B1 biodegradation

    Institute of Scientific and Technical Information of China (English)

    Rosario; Galarza-Seeber; Juan; David; Latorre; Xochitl; Hernandez-Velasco; Amanda; Drake; Wolfenden; Lisa; Renee; Bielke; Anita; Menconi; Billy; Marshall; Hargis; Guillermo; Tellez

    2015-01-01

    Objective: To evaluate the ability of Bacillus spp. as direct-fed microbials(DFM) to biodegrade al atoxin B1(AFB1) by using an in vitro digestive model simulating in vivo conditions.Methods: Sixty-nine Bacillus isolates were obtained from intestines, and soil samples were screened by using a selective media method against 0.25 and 1.00 μg/m L of AFB1 in modii ed Czapek-Dox medium. Plates were incubated at 37 °C and observed every two days for two weeks. Physiological properties of the three Bacillus spp. candidates were characterized biochemically and by 16 S r RNA sequence analyzes for identii cation. Tolerance to acidic p H, osmotic concentrations of Na Cl, bile salts were tested, and antimicrobial sensitivity proi les were also determined. Bacillus candidates were individually sporulated by using a solid fermentation method and combined. Spores were incorporated into 1 of 3 experimental feed groups: 1) Negative control group, with unmedicated starter broiler feed without AFB1; 2) Positive control group, with negative control feed contaminated with 0.01% AFB1; 3) DFM treated group, with positive control feed supplemented with 109 spores/g. After digestion time(3:15 h), supernatants and digesta were collected for high-performance liquid chromatography l uorescence detection analysis by triplicate.Results: Three out of those sixty-nine DFM candidates showed ability to biodegrade AFB1 in vitro based on growth as well as reduction of l uorescence and area of clearance around each colony in modii ed Czapek-Dox medium which was clearly visible under day light after 48 h of evaluation. Analysis of 16S-DNA identii ed the strains as Bacillus amyloliquefaciens, Bacillus megaterium and Bacillus subtilis. The three Bacillus strains were tolerant to acidic conditions(p H 2.0), tolerant to a high osmotic pressure(Na Cl at 6.5%), and were able to tolerate 0.037% bile salts after 24 h of incubation. No signii cant dif erences(P > 0.05) were observed in the concentrations of

  20. A solid-state NMR and DFT study of compositional modulations in AlxGa1-xAs

    NARCIS (Netherlands)

    Knijn, Paulus J.; Bentum, P. Jan M. van; Eck, Ernst R.H. van; Fang, Changming; Grimminck, Dennis L.A.G.; Groot, Robert A. de; Havenith, Remco W.A.; Marsman, Martijn; Meerts, W. Leo; Wijs, Gilles A. de; Kentgens, Arno P.M.

    2010-01-01

    We have conducted 75As and 69Ga Nuclear Magnetic Resonance (NMR) experiments to investigate order/disorder in AlxGa1-xAs lift-off films with x ~ 0.297 and 0.489. We were able to identify all possible As(AlnGa4-n) sites with n = 0–4 coordinations in 75As NMR spectra using spin-echo experiments at 18.

  1. Photoelectric behaviour of lattice-matched GaAs/Alx Ga1-xAs quantum well electrodes

    Institute of Scientific and Technical Information of China (English)

    刘尧; 肖绪瑞; 曾一平; 闫春辉; 郑海群; 孙殿照

    1997-01-01

    The photoelectric properties of the lattice-matched GaAs/AlxGa1-xAs quantum well electrodes and the influence of the electrode structure such as well width, the thickness of outer barrier and the number of period were studied in a nonaqueous electrolyte. A new kind of structure of multiple quantum well electrode with varied well width, possessing the quantum yield three times that of GaAs bulk materials, was designed and fabricated.

  2. 76 FR 14289 - Bacillus thuringiensis

    Science.gov (United States)

    2011-03-16

    ... AGENCY 40 CFR Part 174 Bacillus thuringiensis eCry3.1Ab Protein in Corn; Temporary Exemption From the... regulation extends a temporary exemption from the requirement of a tolerance for residues of Bacillus... permissible level for residues of Bacillus thuringiensis eCry3.1Ab protein in corn. The temporary...

  3. 75 FR 34040 - Bacillus thuringiensis

    Science.gov (United States)

    2010-06-16

    ... AGENCY 40 CFR Part 174 Bacillus thuringiensis eCry3.1Ab Protein in Corn; Temporary Exemption from the... regulation establishes a temporary exemption from the requirement of a tolerance for residues of Bacillus... Bacillus thuringiensis eCry3.1Ab protein in corn under the FFDCA. The temporary tolerance exemption...

  4. Molecular beam epitaxy of free-standing bulk wurtzite AlxGa1-xN layers using a highly efficient RF plasma source

    OpenAIRE

    2016-01-01

    Recent developments with group III nitrides suggest AlxGa1-xN based LEDs can be new alternative commer-cially viable deep ultra-violet light sources. Due to a sig-nificant difference in the lattice parameters of GaN and AlN, AlxGa1-xN substrates would be preferable to either GaN or AlN for ultraviolet device applications. We have studied the growth of free-standing wurtzite AlxGa1-xN bulk crystals by plasma-assisted molecular beam epitaxy (PA-MBE) using a novel RF plasma source. Thick wurtz-i...

  5. Essential Bacillus subtilis genes

    DEFF Research Database (Denmark)

    Kobayashi, K.; Ehrlich, S.D.; Albertini, A.

    2003-01-01

    To estimate the minimal gene set required to sustain bacterial life in nutritious conditions, we carried out a systematic inactivation of Bacillus subtilis genes. Among approximate to4,100 genes of the organism, only 192 were shown to be indispensable by this or previous work. Another 79 genes were...

  6. Characterization of Bacillus cereus

    NARCIS (Netherlands)

    Wijnands LM; Dufrenne JB; Leusden FM; MGB

    2002-01-01

    Bacillus cereus is a ubiquitary microorganism that may cause food borne disease. Pathogenicity, however, depends on various characteristics such as the ability to form (entero)-toxin(s) that can not be detected by microbiological methods. Further characterization of pathogenic properties is not only

  7. Biodiversity in Bacillus cereus

    NARCIS (Netherlands)

    Pielaat A; Fricker M; Nauta MJ; Leusden FM van; MGB

    2006-01-01

    Experiments have been performed by different partners to identify variability in properties of Bacillus cereus strains that contribute to the extent of their virulence as part of an EU project. To this end, 100 B. cereus strains were selected and screened for biological properties, such as toxin pro

  8. Phylogenetic distribution of extracellular guanyl-preferring ribonucleases renews taxonomic status of two Bacillus strains.

    Science.gov (United States)

    Ulyanova, Vera; Shah Mahmud, Raihan; Dudkina, Elena; Vershinina, Valentina; Domann, Eugen; Ilinskaya, Olga

    2016-09-12

    The potential of microbial ribonucleases as promising antitumor and antiviral agents, determines today's directions of their study. One direction is connected with biodiversity of RNases. We have analyzed completed and drafted Bacillus genomes deposited in GenBank for the presence of coding regions similar to the gene of an extracellular guanyl-preferring RNase of Bacillus amyloliquefaciens (barnase). Orthologues of the barnase gene were detected in 9 species out of 83. All of these belong to "B. subtilis" group within the genus. B. subtilis itself, as well as some other species within this group, lack such types of RNases. RNases similar to barnase were also found in species of "B. cereus" group as a part of plasmid-encoded S-layer toxins. It was also found that taxonomic states of culture collection strains, which were initially described based on a limited set of phenotypic characteristics, can be misleading and need to be confirmed. Using several approaches such as matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS), sequencing of genes for 16S ribosomal RNA and RNA polymerase subunit beta followed by reconstruction of phylogenetic trees, we have re-identified two RNase-secreting Bacillus strains: B. thuringiensis B-388 which should be assigned as B. altitudinis B388 and B. intermedius 7P which should be renamed as B. pumilus 7P. Therefore, small secreted guanyl-preferring RNases are the feature of "B. subtilis" group only, which is characterized by distinctive lifestyle and adaptation strategies to environment.

  9. Evaluation and selection of Bacillus species based on enzyme production, antimicrobial activity and biofilm synthesis as direct-fed microbials candidates for poultry

    Directory of Open Access Journals (Sweden)

    Juan D Latorre

    2016-10-01

    Full Text Available Social concern about misuse of antibiotics as growth promoters (AGP and generation of multidrug-resistant bacteria have restricted the dietary inclusion of antibiotics in livestock feed in several countries. Direct-fed microbials (DFM are one of the multiple alternatives commonly evaluated as substitutes of AGP. Sporeformer bacteria from the genus Bacillus have been extensively investigated because of their extraordinary properties to form highly-resistant endospores, production of antimicrobial compounds and synthesize different exogenous enzymes. The purpose of the present study was to evaluate and select Bacillus spp. from environmental and poultry sources as DFM candidates, considering their enzyme production profile, biofilm synthesis capacity and pathogen-inhibition activity. Thirty one Bacillus isolates were screened for in vitro relative enzyme activity of amylase, protease, lipase and phytase using a selective media for each enzyme, with 3/31 strains selected as superior enzyme producers. These three isolates were identified as B. subtilis (1/3, and B. amyloliquefaciens (2/3 based on biochemical tests and 16S rRNA sequence analysis. For evaluation of biofilm synthesis, the generation of an adherent crystal violet-stained ring was determined in polypropylene tubes, resulting in 11/31 strains showing a strong biofilm formation. Moreover, all Bacillus strains were evaluated for growth inhibition activity against Salmonella enterica serovar Enteritidis (26/31, Escherichia coli (28/31 and Clostridioides difficile (29/31. Additionally, in previous in vitro and in vivo studies, these selected Bacillus strains have shown to be resistant to different biochemical conditions of the gastrointestinal tract of poultry. Results of the present study suggest that the selection and consumption of Bacillus-DFM, producing a variable set of enzymes and antimicrobial compounds may contribute to enhanced performance through improving nutrient digestibility

  10. Maintenance metabolism and carbon fluxes in Bacillus species

    Directory of Open Access Journals (Sweden)

    Decasper Seraina

    2008-06-01

    Full Text Available Abstract Background Selection of an appropriate host organism is crucial for the economic success of biotechnological processes. A generally important selection criterion is a low maintenance energy metabolism to reduce non-productive consumption of substrate. We here investigated, whether various bacilli that are closely related to Bacillus subtilis are potential riboflavin production hosts with low maintenance metabolism. Results While B. subtilis exhibited indeed the highest maintenance energy coefficient, B. licheniformis and B. amyloliquefaciens exhibited only statistically insignificantly reduced maintenance metabolism. Both B. pumilus and B. subtilis (natto exhibited irregular growth patterns under glucose limitation such that the maintenance metabolism could not be determined. The sole exception with significantly reduced maintenance energy requirements was the B. licheniformis strain T380B. The frequently used spo0A mutation significantly increased the maintenance metabolism of B. subtilis. At the level of 13C-detected intracellular fluxes, all investigated bacilli exhibited a significant flux through the pentose phosphate pathway, a prerequisite for efficient riboflavin production. Different from all other species, B. subtilis featured high respiratory tricarboxylic acid cycle fluxes in batch and chemostat cultures. In particular under glucose-limited conditions, this led to significant excess formation of NADPH of B. subtilis, while anabolic consumption was rather balanced with catabolic NADPH formation in the other bacilli. Conclusion Despite its successful commercial production of riboflavin, B. subtilis does not seem to be the optimal cell factory from a bioenergetic point of view. The best choice of the investigated strains is the sporulation-deficient B. licheniformis T380B strain. Beside a low maintenance energy coefficient, this strain grows robustly under different conditions and exhibits only moderate acetate overflow, hence

  11. Draft Genome Sequences of Three Alkaliphilic Bacillus Strains, Bacillus wakoensis JCM 9140T, Bacillus akibai JCM 9157T, and Bacillus hemicellulosilyticus JCM 9152T

    OpenAIRE

    Yuki, Masahiro; Oshima, Kenshiro; Suda, Wataru; OSHIDA, Yumi; Kitamura, Keiko; Iida, Toshiya; Hattori, Masahira; Ohkuma, Moriya

    2014-01-01

    Here, we report the draft genome sequences of the type strains of three cellulolytic or hemicellulolytic alkaliphilic Bacillus species: Bacillus wakoensis, Bacillus akibai, and Bacillus hemicellulosilyticus. The genome information for these three strains will be useful for studies of alkaliphilic Bacillus species, their evolution, and biotechnological applications for their enzymes.

  12. Genome analysis shows Bacillus axarquiensis is not a later heterotypic synonym of Bacillus mojavensis; Reclassification of Bacillus malacitensis and Brevibacterium halotolerans as heterotypic synonyms of Bacillus axarquiensis

    Science.gov (United States)

    Bacillus axarquiensis and Bacillus malacitensis were previously reported to be later heterotypic synonyms of Bacillus mojavensis, based primarily on DNA-DNA relatedness values. We have sequenced draft genomes of Bacillus axarquiensis NRRL B-41617**T and Bacillus malacitensis NRRL B-41618**T. Compara...

  13. Nano-Mechanical Properties of Heat Inactivated Bacillus anthracis and Bacillus thuringiensis Spores

    Science.gov (United States)

    2008-03-01

    NANO-MECHANICAL PROPERTIES OF HEAT INACTIVATED BACILLUS ANTHRACIS AND BACILLUS THURINGIENSIS ...GAP/ENP/08-M07 NANO-MECHANICAL PROPERTIES OF HEAT INACTIVATED BACILLUS ANTHRACIS AND BACILLUS THURINGIENSIS SPORES THESIS...AFIT/GAP/ENP/08-M07 NANO-MECHANICAL PROPERTIES OF HEAT INACTIVATED BACILLUS ANTHRACIS AND BACILLUS THURINGIENSIS SPORES Jessica

  14. High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway.

    Science.gov (United States)

    Zhou, En-Min; Murugapiran, Senthil K; Mefferd, Chrisabelle C; Liu, Lan; Xian, Wen-Dong; Yin, Yi-Rui; Ming, Hong; Yu, Tian-Tian; Huntemann, Marcel; Clum, Alicia; Pillay, Manoj; Palaniappan, Krishnaveni; Varghese, Neha; Mikhailova, Natalia; Stamatis, Dimitrios; Reddy, T B K; Ngan, Chew Yee; Daum, Chris; Shapiro, Nicole; Markowitz, Victor; Ivanova, Natalia; Spunde, Alexander; Kyrpides, Nikos; Woyke, Tanja; Li, Wen-Jun; Hedlund, Brian P

    2016-01-01

    Thermus amyloliquefaciens type strain YIM 77409(T) is a thermophilic, Gram-negative, non-motile and rod-shaped bacterium isolated from Niujie Hot Spring in Eryuan County, Yunnan Province, southwest China. In the present study we describe the features of strain YIM 77409(T) together with its genome sequence and annotation. The genome is 2,160,855 bp long and consists of 6 scaffolds with 67.4 % average GC content. A total of 2,313 genes were predicted, comprising 2,257 protein-coding and 56 RNA genes. The genome is predicted to encode a complete glycolysis, pentose phosphate pathway, and tricarboxylic acid cycle. Additionally, a large number of transporters and enzymes for heterotrophy highlight the broad heterotrophic lifestyle of this organism. A denitrification gene cluster included genes predicted to encode enzymes for the sequential reduction of nitrate to nitrous oxide, consistent with the incomplete denitrification phenotype of this strain.

  15. Local atomic structure in strained interfaces of InxGa1-xAs/InP heterostructures

    Science.gov (United States)

    Boscherini, F.; Lamberti, C.; Pascarelli, S.; Rigo, C.; Mobilio, S.

    1998-10-01

    We present a structural study of the interfaces between InxGa1-xAs and InP (and vice versa) by x-ray absorption fine structure spectroscopy (XAFS); the samples investigated are a set of nominally matched InxGa1-xAs/InP short-period superlattices. We find that the coordination numbers around As and Ga deviate significantly from those expected in an abrupt superlattice structure even if interface bonds are taken into account; this demonstrates the presence of unwanted interface layers between InP and InxGaxAs (and vice versa). Based on the growth sequence employed and on indications from other techniques, we model the structure as composed of the two nominal layers plus InAsxP1-x and In0.53Ga0.47As1-yPy strained interface layers. XAFS is a chemically sensitive probe of the local structure in these strained layers. We find that each bond length measured (As-In, Ga-As, and Ga-P) has a different value, with small variations among the different samples. This implies the presence of structural distortions that accommodate strain at the local level. We find good agreement between the XAFS results and high-resolution x-ray diffraction data that probe the structure in an average way. The results are discussed also with reference to the problem of the band offsets at InxGa1-xAs/InP heterojunctions and to theoretical simulations.

  16. Effect of temperature on In_x Ga_(1-x) As/GaAs quantum dot lasing

    CERN Document Server

    Borji, Mahdi Ahmadi

    2015-01-01

    In this paper, the strain, band-edge, and energy levels of pyramidal In_x Ga_(1-x) As/GaAs quantum dot lasers (QDLs) are investigated by 1-band effective mass approach. It is shown that while temperature has no remarkable effect on the strain tensor, the band gap lowers and the radiation wavelength elongates by rising temperature. Also, band-gap and laser energy do not linearly decrease by temperature rise. Our results appear to coincide with former researches. Keywords: quantum dot laser, strain tensor, band edge, nano-electronics, temperature effect

  17. Sealed-ampoule diffusion of zinc into Ga1 - xAlxAs at 650 °C

    Science.gov (United States)

    Quintana, V.; Clemencon, J. J.; Chin, A. K.

    1988-04-01

    The diffusivity of the zinc Ga1-xAlxAs at 650 °C was studied using sealed-ampoule diffusion. Whereas Ageno, Roedel, Mellen, and Escher [Appl. Phys. Lett. 47, 1193 (1985)] found dramatic decreases in the zinc diffusivity at xAl≊0.05 and xAl≊0.20 using open-tube diffusion, the results of the present study show that the sealed-ampoule technique results in a more uniform dependence of the zinc diffusivity on aluminum concentration.

  18. Taxonomy Icon Data: Bacillus subtilis [Taxonomy Icon

    Lifescience Database Archive (English)

    Full Text Available g Bacillus_subtilis_S.png Bacillus_subtilis_NS.png http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Bacillus...+subtilis&t=L http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Bacillus+subtilis&t=NL http://biosciencedbc.jp/taxonomy..._icon/icon.cgi?i=Bacillus+subtilis&t=S http://biosciencedbc.jp/taxonomy..._icon/icon.cgi?i=Bacillus+subtilis&t=NS http://togodb.biosciencedbc.jp/togodb/view/taxonomy_icon_comment_en?species_id=214 ...

  19. Large signal and noise properties of heterojunction Al x Ga1-x As/GaAs DDR IMPATTs

    Science.gov (United States)

    Banerjee, Suranjana; Mitra, Monojit

    2016-06-01

    Simulation studies are carried out on the large signal and noise properties of heterojunction (HT) Al x Ga1-x As/GaAs double drift region (DDR) IMPATT devices at V-band (60 GHz). The dependence of Al mole fraction on the aforementioned properties of the device has been investigated. A full simulation software package has been indigenously developed for this purpose. The large signal simulation is based on a non-sinusoidal voltage excitation model. Three mole fractions of Al and two complementary HT DDR structures for each mole fraction i.e., six DDR structures are considered in this study. The purpose is to discover the most suitable structure and corresponding mole fraction at which high power, high efficiency and low noise are obtained from the device. The noise spectral density and noise measure of all six HT DDR structures are obtained from a noise model and simulation method. Similar studies are carried out on homojunction (HM) DDR GaAs IMPATTs at 60 GHz to compare their RF properties with those of HT DDR devices. The results show that the HT DDR device based on N-Al x Ga1-x As/p-GaAs with 30% mole fraction of Al is the best one so far as large signal power output, DC to RF conversion efficiency and noise level are concerned.

  20. Transmission-mode GaN photocathode based on graded AlxGa1-xN buffer layer

    Institute of Scientific and Technical Information of China (English)

    Xiaoqing Du; Benkang Chang; Yunsheng Qian; Pin Gao

    2011-01-01

    @@ We create a GaN photocathode based on graded AlxGa1-xN buffer layers to overcome the influence of buffer-emission layer interface on the photoemission of transmission-mode GaN photocathodes. A gateshaped spectral response with a 260-nm starting wavelength and a 375-nm cut-off wavelength is obtained.Average quantum efficiency is 15% and short wavelength responses are almost equivalent to long wavelength ones. The fitted interface recombination velocity is 5×104 cm/s, with negligible magnitude, proving that the design of the graded buffer layers is efficient in obtaining good interface quality between the buffer and the emission layer.%We create a GaN photocathode based on graded AlxGa1-xN buffer layers to overcome the influence of buffer-emission layer interface on the photoemission of transmission-mode GaN photocathodes. A gateshaped spectral response with a 260-nm starting wavelength and a 375-nm cut-off wavelength is obtained. Average quantum efficiency is 15% and short wavelength responses are almost equivalent to long wavelength ones. The fitted interface recombination velocity is 5× 104 cm/s, with negligible magnitude, proving that the design of the graded buffer layers is efficient in obtaining good interface quality between the buffer and the emission layer.

  1. Bacillus volatiles adversely affect the physiology and ultra-structure of Ralstonia solanacearum and induce systemic resistance in tobacco against bacterial wilt

    Science.gov (United States)

    Tahir, Hafiz Abdul Samad; Gu, Qin; Wu, Huijun; Niu, Yuedi; Huo, Rong; Gao, Xuewen

    2017-01-01

    Volatile organic compounds (VOCs) produced by various bacteria have significant potential to enhance plant growth and to control phytopathogens. Six of the most effective antagonistic Bacillus spp. were used in this study against Ralstonia solanacearum (Rsc) TBBS1, the causal agent of bacterial wilt disease in tobacco. Bacillus amyloliquefaciens FZB42 and Bacillus artrophaeus LSSC22 had the strongest inhibitory effect against Rsc. Thirteen VOCs produced by FZB42 and 10 by LSSC22 were identified using gas chromatography-mass spectrometry analysis. Benzaldehyde, 1,2-benzisothiazol-3(2 H)-one and 1,3-butadiene significantly inhibited the colony size, cell viability, and motility of pathogens and negatively influenced chemotaxis. Transmission and scanning electron microscopy revealed severe morphological and ultra-structural changes in cells of Rsc. Furthermore, VOCs altered the transcriptional expression level of PhcA (a global virulence regulator), type III secretion system (T3SS), type IV secretion system (T4SS), extracellular polysaccharides and chemotaxis-related genes, which are major contributors to pathogenicity, resulting in decreased wilt disease. The VOCs significantly up-regulated the expression of genes related to wilt resistance and pathogen defense. Over-expression of EDS1 and NPR1 suggest the involvement of SA pathway in induction of systemic resistance. Our findings provide new insights regarding the potential of antibacterial VOCs as a biocontrol tool against bacterial wilt diseases. PMID:28091587

  2. Gene expression regulation in the plant growth promoting Bacillus atrophaeus UCMB-5137 stimulated by maize root exudates.

    Science.gov (United States)

    Mwita, Liberata; Chan, Wai Yin; Pretorius, Theresa; Lyantagaye, Sylvester L; Lapa, Svitlana V; Avdeeva, Lilia V; Reva, Oleg N

    2016-09-15

    Despite successful use of Plant Growth Promoting Rhizobacteria (PGPR) in agriculture, little is known about specific mechanisms of gene regulation facilitating the effective communication between bacteria and plants during plant colonization. Active PGPR strain Bacillus atrophaeus UCMB-5137 was studied in this research. RNA sequencing profiles were generated in experiments where root exudate stimulations were used to mimic interactions between bacteria and plants. It was found that the gene regulation in B. atrophaeus UCMB-5137 in response to the root exudate stimuli differed from the reported gene regulation at similar conditions in B. amyloliquefaciens FZB42, which was considered as a paradigm PGPR. This difference was explained by hypersensitivity of UCMB-5137 to the root exudate stimuli impelling it to a sessile root colonization behavior through the CcpA-CodY-AbrB regulation. It was found that the transcriptional factor DegU also could play an important role in gene regulations during plant colonization. A significant stress caused by the root exudates on in vitro cultivated B. atrophaeus UCMB-5137 was noticed and discussed. Multiple cases of conflicted gene regulations showed scantiness of our knowledge on the regulatory network in Bacillus. Some of these conflicted regulations could be explained by interference of non-coding RNA (ncRNA). Search through differential expressed intergenic regions revealed 49 putative loci of ncRNA regulated by the root exudate stimuli. Possible target mRNA were predicted and a general regulatory network of B. atrophaeus UCMB-5137 genome was designed.

  3. Built-in-polarization field effect on lattice thermal conductivity of AlxGa1-xN/GaN heterostructure

    Science.gov (United States)

    Pansari, Anju; Gedam, Vikas; Kumar Sahoo, Bijaya

    2015-12-01

    The built-in-polarization field at the interface of AlxGa1-xN/GaN heterostructure enhances elastic constant, phonon velocity, Debye temperature and their bowing constants of barrier material AlxGa1-xN. The combined phonon relaxation time of acoustics phonons has been computed for with and without built-in-polarization field at room temperature for different aluminum (Al) content (x). Our result shows that the built-in-polarization field suppresses the scattering mechanisms and enhances the combined relaxation time. The thermal conductivity of AlxGa1-xN has been estimated as a function of temperature for x=0, 0.1, 0.5 and 1 for with and without polarization field. Minimum thermal conductivity has been observed for x=0.1 and 0.5. Analysis shows that up to a certain temperature (different for different x) the polarization field acts as negative effect and reduces the thermal conductivity and after this temperature thermal conductivity is significantly contributed by polarization field. This signifies pyroelectric character of AlxGa1-xN. The pyroelectric transition temperature of AlxGa1-xN alloy has been predicted for different x. Our study reports that room temperature thermal conductivity of AlxGa1-xN/GaN heterostructure is enhanced by built-in-polarization field. The temperature dependence of thermal conductivity for x=0.1 and 0.5 are in line with prior experimental studies. The method we have developed can be used for the simulation of heat transport in nitride devices to minimize the self heating processes and in polarization engineering strategies to optimize the thermoelectric performance of AlxGa1-xN/GaN heterostructures.

  4. Bacillus oryzicola sp. nov., an Endophytic Bacterium Isolated from the Roots of Rice with Antimicrobial, Plant Growth Promoting, and Systemic Resistance Inducing Activities in Rice.

    Science.gov (United States)

    Chung, Eu Jin; Hossain, Mohammad Tofajjal; Khan, Ajmal; Kim, Kyung Hyun; Jeon, Che Ok; Chung, Young Ryun

    2015-06-01

    Biological control of major rice diseases has been attempted in several rice-growing countries in Asia during the last few decades and its application using antagonistic bacteria has proved to be somewhat successful for controlling various fungal diseases in field trials. Two novel endophytic Bacillus species, designated strains YC7007 and YC7010(T), with anti-microbial, plant growth-promoting, and systemic resistance-inducing activities were isolated from the roots of rice in paddy fields at Jinju, Korea, and their multifunctional activities were analyzed. Strain YC7007 inhibited mycelial growth of major rice fungal pathogens strongly in vitro. Bacterial blight and panicle blight caused by Xanthomonas oryzae pv. oryzae (KACC 10208) and Burkholderia glumae (KACC 44022), respectively, were also suppressed effectively by drenching a bacterial suspension (10(7) cfu/ml) of strain YC7007 on the rhizosphere of rice. Additionally, strain YC7007 promoted the growth of rice seedlings with higher germination rates and more tillers than the untreated control. The taxonomic position of the strains was also investigated. Phylogenetic analyses based on 16S rRNA gene sequences indicated that both strains belong to the genus Bacillus, with high similarity to the closely related strains, Bacillus siamensis KACC 15859(T) (99.67%), Bacillus methylotrophicus KACC 13105(T) (99.65%), Bacillus amyloliquefaciens subsp. plantarum KACC 17177(T) (99.60%), and Bacillus tequilensis KACC 15944(T) (99.45%). The DNA-DNA relatedness value between strain YC7010(T) and the most closely related strain, B. siamensis KACC 15859(T) was 50.4±3.5%, but it was 91.5±11.0% between two strains YC7007 and YC7010(T), indicating the same species. The major fatty acids of two strains were anteiso-C15:0 and iso C15:0. Both strains contained MK-7 as a major respiratory quinone system. The G+C contents of the genomic DNA of two strains were 50.5 mol% and 51.2 mol%, respectively. Based on these polyphasic studies

  5. Bacillus oryzicola sp. nov., an Endophytic Bacterium Isolated from the Roots of Rice with Antimicrobial, Plant Growth Promoting, and Systemic Resistance Inducing Activities in Rice

    Directory of Open Access Journals (Sweden)

    Eu Jin Chung

    2015-06-01

    Full Text Available Biological control of major rice diseases has been attempted in several rice-growing countries in Asia during the last few decades and its application using antagonistic bacteria has proved to be somewhat successful for controlling various fungal diseases in field trials. Two novel endophytic Bacillus species, designated strains YC7007 and YC7010T, with anti-microbial, plant growth-promoting, and systemic resistance-inducing activities were isolated from the roots of rice in paddy fields at Jinju, Korea, and their multifunctional activities were analyzed. Strain YC7007 inhibited mycelial growth of major rice fungal pathogens strongly in vitro. Bacterial blight and panicle blight caused by Xanthomonas oryzae pv. oryzae (KACC 10208 and Burkholderia glumae (KACC 44022, respectively, were also suppressed effectively by drenching a bacterial suspension (10⁷ cfu/ml of strain YC7007 on the rhizosphere of rice. Additionally, strain YC7007 promoted the growth of rice seedlings with higher germination rates and more tillers than the untreated control. The taxonomic position of the strains was also investigated. Phylogenetic analyses based on 16S rRNA gene sequences indicated that both strains belong to the genus Bacillus, with high similarity to the closely related strains, Bacillus siamensis KACC 15859T (99.67%, Bacillus methylotrophicus KACC 13105T (99.65%, Bacillus amyloliquefaciens subsp. plantarum KACC 17177T (99.60%, and Bacillus tequilensis KACC 15944T (99.45%. The DNA-DNA relatedness value between strain YC7010T and the most closely related strain, B. siamensis KACC 15859T was 50.4±3.5%, but it was 91.5±11.0% between two strains YC7007 and YC7010T, indicating the same species. The major fatty acids of two strains were anteiso-C15:0 and iso C15:0. Both strains contained MK-7 as a major respiratory quinone system. The G+C contents of the genomic DNA of two strains were 50.5 mol% and 51.2 mol%, respectively. Based on these polyphasic studies, the

  6. Genome analysis shows Bacillus axarquiensis is not a later heterotypic synonym of Bacillus mojavensis; reclassification of Bacillus malacitensis and Brevibacterium halotolerans as heterotypic synonyms of Bacillus axarquiensis.

    Science.gov (United States)

    Dunlap, Christopher A; Bowman, Michael J; Schisler, David A; Rooney, Alejandro P

    2016-06-01

    Bacillus axarquiensis and Bacillus malacitensis were previously reported to be later heterotypic synonyms of Bacillus mojavensis, based primarily on DNA-DNA relatedness values. We have sequenced draft genomes of Bacillus axarquiensis NRRL B-41617T and Bacillus malacitensis NRRL B-41618T. Comparative genomics and DNA-DNA relatedness calculations showed that while Bacillus axarquiensis and Bacillus malacitensis are synonymous with each other, they are not synonymous with Bacillus mojavensis. In addition, a draft genome was completed for Brevibacterium halotolerans, a strain long suspected of being a Bacillus subtilis group member based on 16S rRNA similarities (99.8 % with Bacillus mojavensis). Comparative genomics and DNA-DNA relatedness calculations showed that Brevibacterium halotolerans is synonymous with Bacillus axarquiensis and Bacillus malacitensis. The pairwise in silico DNA-DNA hybridization values calculated in comparisons between the three conspecific strains were all greater than 92 %, which is well above the standard species threshold of 70 %. While the pairwise in silico DNA-DNA hybridization values calculated in comparisons of the three conspecific strains with Bacillus mojavensis were all less than 65 %. The combined results of our genotype and phenotype studies showed that Bacillus axarquiensis, Bacillus malacitensis and Brevibacterium halotolerans are conspecific and distinct from Bacillus mojavensis. Because the valid publication of the name Bacillus axarquiensis predates the publication of the name Bacillus malacitensis, we propose that Bacillus malacitensis be reclassified as a synonym of Bacillus axarquiensis. In addition, we propose to reclassify Brevibacterium halotolerans as a synonym of Bacillus axarquiensis. An amended description of Bacillus axarquiensis is provided.

  7. 一株γ多聚谷氨酸生产菌的分离筛选与鉴定%Isolation and identification of Bacillus strain producing γ-polyglutamic acid

    Institute of Scientific and Technical Information of China (English)

    何剑; 雍晓雨; 周俊; 王舒雅; 陈怡露; 郑涛

    2014-01-01

    从菜园土壤中取样,在含有谷氨酸的筛选培养基上采用梯度稀释涂布、平板划线的方法,以菌落/菌液黏稠度为指示,分离筛选生产γ多聚谷氨酸的菌株。利用氨基酸分析仪测定提取纯化后的γ多聚谷氨酸的产量,并通过形态学、生理生化特征以及16S rDNA基因序列分析鉴定该菌株,并对其合成γ多聚谷氨酸的功能基因进行PCR扩增。结果表明:筛选到1株产γ多聚谷氨酸的细菌C1,其液体摇瓶发酵产量为18�4 g/L,相对分子质量为1�8×106;该菌株为革兰氏阳性,菌落黏稠、菌体呈杆状、产芽胞、且形成荚膜;主要生理生化特点为能利用葡萄糖和蔗糖发酵,水解淀粉,H2 O2酶阳性,产吲哚等;经16S rDNA鉴定与Bacillus amyloliquefaciens ATCC 23350同源性为100%,故命名为Bacillus amyloliquefaciens C1,且拥有γ多聚谷氨酸合成的相关基因pgsA、pgsB和pgsC。%Soil sample was collected from farmland. The strains were screened by the methods of gradient dilution and plate streaking on the selected medium containing glutamic acid and under the indication of the viscosity of their fermentation broth. The γ-polyglutamic acid production of the strains was obtained by analyzing the glutamic acid content of the hydrolysate of γ-polyglutamic acid using amino acid analyser. Then, the isolated strain was identified according to the morphological features, physiological and biochemical characteristics, as well as phylogenetic analysis of 16S rDNA sequences. Finally, the pgsA, pgsB, and pgsC gene, related to the γ-polyglutamic acid synthesis were amplified by PCR. A Bacillus, called the C1, was isolated with aγ-polyglutamic acid production of 18�4 g/L in flask fermentation culture. The molecular mass ofγ-polyglutamic acid produced by strain C1 was 1�8×106 detected by GPC. C1 was a gram-positive bacilli, which fermented both glucose and sucrose, hydrolysed starch, produced

  8. Produção de amilase por Bacillus amyloliquefaciens utilizando torta de macaúba (Acrocomia aculeata) e farinha de pupunha (Bactris gasipaes) como substratos

    OpenAIRE

    Silva, Isadora Ferreira da

    2012-01-01

    Amilases são enzimas que atuam no rompimento das ligações glicosídicas presentes nas cadeias de amilose e amilopectina. As amilases possuem aplicações em diversas áreas tais como: indústria de papel e celulose, indústria têxtil, indústria de detergentes e produtos de limpeza, indústria química e farmacêutica, na produção de vitaminas e antibióticos. Embora as amilases sejam encontradas em plantas, animais e micro-organismos, as enzimas microbianas geralmente atendem de maneira satisfatória à ...

  9. Lipopeptides from Bacillus strain AR2 inhibits biofilm formation by Candida albicans.

    Science.gov (United States)

    Rautela, Ria; Singh, Anil Kumar; Shukla, Abha; Cameotra, Swaranjit Singh

    2014-05-01

    The ability of the human fungal pathogen Candida albicans to reversibly switch between different morphological forms and establish biofilms is crucial for establishing infection. Targeting phenotypic plasticity and biofilm formation in C. albicans represents a new concept for antifungal drug discovery. The present study evaluated the influence of cyclic lipopeptide biosurfactant produced by Bacillus amyloliquefaciens strain AR2 on C. albicans biofilms. The biosurfactant was characterized as a mixture of iturin and fengycin by MALDI-TOF and amino acid analysis. The biosurfactant exhibited concentration dependent growth inhibition and fungicidal activity. The biosurfactant at sub-minimum growth inhibition concentration decreased cell surface hydrophobicity, hindered germ tube formation and reduced the mRNA expression of hyphae-specific gene HWP1 and ALS3 without exhibiting significant growth inhibition. The biosurfactants inhibited biofilm formation in the range of 46-100 % depending upon the concentration and Candida strains. The biosurfactant treatment dislodged 25-100 % of preformed biofilm from polystyrene plates. The biosurfactant retained its antifungal and antibiofilm activity even after exposure to extreme temperature. By virtue of the ability to inhibit germ tube and biofilm formation, two important traits of C. albicans involved in establishing infection, lipopeptides from strain AR2 may represent a potential candidate for developing heat stable anti-Candida drugs.

  10. Species of Staphylococcus and Bacillus isolated from traditional sausages as producers of biogenic amines.

    Directory of Open Access Journals (Sweden)

    Roberto eBermúdez

    2012-04-01

    Full Text Available Histidine, lysine, ornithine and tyrosine decarboxylase activities were tested in 38 strains of Staphylococcus (15 of Staph. equorum, 11 of Staph. epidermidis, 7 of Staph. saprophyticus, and 5 of Staph. pasteuri and 19 strains of Bacillus (13 of B. subtilis and 6 of B. amyloliquefaciens isolated from two Spanish traditional sausage varieties.The four decarboxylase activities were present in most of the strains studied, but some variability was observed between strains within each microbial species.Accumulation of putrescine and cadaverine was assessed in the culture media of the strains that displayed ornithine and lysine decarboxylase activities. The aminogenic potential of the strains was low, with amounts accumulated lower than 25 mg/L for the putrescine and than 5 mg/L for the cadaverine, with the exception of a strain of Staph. equorum that produced 1415 mg/L of putrescine, and of a strain of Staph. epidermidis that accumulated 977 mg/L of putrescine and 36 mg/L of cadaverine.

  11. Regions of Different Confinement in Low-Dimensional AlyInxGa1−x−yN Quantum Structures

    Directory of Open Access Journals (Sweden)

    A. Gröning

    2007-01-01

    Full Text Available The optical properties of metal-organic vapor phase epitaxy grown AlyInxGa1−x−yN quantum dot structures have been studied by time-resolved photoluminescence experiments. We investigated the recombination dynamics of the photo-exited carriers in dependence of the growth parameters such as aluminium flow and the duration of the growth interruption after the dot deposition. Our results confirm the presence of localized states, where the degree of localization is strongly dependent on the growth conditions. To describe this behavior, we propose a band structure with coupled potentials for these nanostructures. Finally, we demonstrate state filling to prove the zero-dimensional character of the strongly localized states in our quaternary quantum dots.

  12. Phonon-assisted intersubband transitions in wurtzite GaN/InxGa1-xN quantum wells

    Institute of Scientific and Technical Information of China (English)

    Zhu Jun; Ban Shi-Liang; Ha Si-Hua

    2012-01-01

    A detailed numerical calculation on the phonon-assisted intersubband transition rates of electrons in wurtzite GaN/InxGa1-xN quantum wells is presented. The quantum-confined Stark effect,induced by the built-in electric field,and the ternary mixed crystal effect are considered.The electron states are obtained by iteratively solving the coupled Schr(o)dinger and Poisson equations.The dispersion properties of each type of phonon modes are considered in the derivation of Fermi's golden rule to evaluate the transition rates.It is indicated that the interface and halfspace phonon scattering play an important role in the process of 1-2 radiative transition.The transition rate is also greatly reduced by the built-in electric field.This work can be helpful for the structural design and simulation of new semiconductor lasers.

  13. Influence of Mn-Doped Content on Ferromagnetism of Ga1-xMnxN Film Grown by LPMOVPE

    Institute of Scientific and Technical Information of China (English)

    ZHANG Bin; ZHANG Ya-Wei; YAO Shu-De; WANG Kun; DING Zhi-Bo; CHEN Zhi-Tao; SU Yue-Yong; ZHANG Guo-Yi; MA Hong-ji; NIE Rui

    2006-01-01

    The diluted magnetic semiconductor Ga1-xMnxN was achieved by low-pressure metal organic vapour-phase epitaxy (LP-MOVPE). Proton-induced x-ray emission was employed non-destructively, quickly and accurately to determine the Mn-doped content. The magnetic property was measured by a superconducting-quantum-interference-device (SQID) magnetometer. Apparent ferromagnetic hysteresis loops measured at or above room temperature are presented. No ferromagnetic secondary phases were detected by high-resolution x-ray diffraction. The experimental results show that the ferromagnetic signal firstly decreases and then increases with the increasing Mn-doped content from 0.23% to 4.69% and it is the weakest when Mn content is 0.51%. The annealing treatment could make the ferromagnetic property stronger.

  14. Transport Equations for CAD Modeling of Al(x)Ga(1-x)N/GaN HEMTs

    Science.gov (United States)

    Freeman, Jon C.

    2003-01-01

    BEMTs formed from Al(x)Ga(1-x)N/GaN heterostructures are being investigated for high RF power and efficiency around the world by many groups, both academic and industrial. In these devices, the 2DEG formation is dominated by both spontaneous and piezoelectric polarization fields, with each component having nearly the same order of magnitude. The piezoelectric portion is induced by the mechanical strain in the structure, and to analyze these devices, one must incorporate the stress/strain relationships, along with the standard semiconductor transport equations. These equations for Wurtzite GaN are not easily found in the open literature, hence this paper summarizes them, along with the constitutive equations for piezoelectric materials. The equations are cast into the format for the Wurtzite crystal class, which is the most common way GaN is grown epitaxially.

  15. Bond-length variation in InxGa1-xAs/InP strained epitaxial layers

    Science.gov (United States)

    Romanato, F.; de Salvador, D.; Berti, M.; Drigo, A.; Natali, M.; Tormen, M.; Rossetto, G.; Pascarelli, S.; Boscherini, F.; Lamberti, C.; Mobilio, S.

    1998-06-01

    Tensile and compressive InxGa1-xAs epilayers grown on [001] InP substrates have been analyzed by fluorescence-detected x-ray-absorption fine structure in order to investigate the length variation suffered by Ga-As and In-As atomic bonds under epitaxial strain. A morphological and structural analysis had previously been performed in order to select only pseudomorphic samples with high lattice quality. A clear variation of the nearest-neighbor distances proportional to the tetragonal distortion of the film has been detected. We discuss the relationship between the long- and short-range descriptions of strain accommodation in the framework of an analytical model.

  16. Electrical Measurements of the Extrinsic Spin Hall Effect in Fe/ In x Ga 1-xAs Heterostructures

    Science.gov (United States)

    Geppert, Chad; Garlid, Eric; Chan, Mun; Crowell, Paul; Hu, Qi; Palmstrøm, Chris

    2011-03-01

    We report on all-electrical measurements of the extrinsic spin Hall effect in Fe/ In x Ga 1-x As heterostructures with n -type channel doping (Si) and highly doped Schottky tunnel barriers. The spin Hall effect refers to the transverse spin current generated by application of a longitudinal unpolarized charge current. Complementary spin accumulation at opposing edges of the channel is detected via a Hanle effect in the voltage measured by pairs of ferromagnetic Hall contacts. The spin Hall conductivity is extracted by fitting the data to a drift-diffusion model incorporating spin precession and relaxation. Tuning the channel conductivity with applied bias allows the skew and side-jump contributions to be determined independently. The resulting magnitude is in agreement with models based on ionized impurity scattering. Further quantitative comparison to theoretical models is achieved by increasing the In concentration beyond previously reported values. Supported by ONR and NSF.

  17. Magnetic and Magnetocaloric Properties in Non-Stoichiometric Gallium Deficient Ni2MnGa1-x Heusler Alloys

    Science.gov (United States)

    Madden, Alexander; Corrigan, Mollie; Barton, Linda

    Magnetic data show that off-stoichiometric gallium deficient Heusler alloys of the form Ni2MnGa1-x have structural martensite transition temperatures that increase strongly with x, while their ferromagnetic Curie temperatures remain nearly unchanged. The martensite transition approaches room temperature for x = 0 . 13 . Samples were prepared by rf induction heating. The influence of quenching and post annealing on magnetic properties, as well as structural grain sizes and magnetic domain structure, were investigated. Since the first order structural phase transition can be adjusted to any convenient temperature, these materials offer intriguing possibilities as magnetic refrigerants. Magnetocaloric properties were investigated by direct measurement of ΔT with the application of field ΔH .

  18. Room-Temperature Ferromagnetism of Ga1-xMnxN Grown by Low-Pressure Metalorganic Chemical Vapour Deposition

    Institute of Scientific and Technical Information of China (English)

    CHEN Zhi-Tao; ZHANG Guo-Yi; SU Yue-Yong; YANG Zhi-Jian; ZHANG Yan; ZHANG Bin; GUO Li-Ping; XU Ke; PAN Yao-Bao; ZHANG Han

    2006-01-01

    @@ Epitaxial films of Ga1-xMnxN have been grown on c-sapphire substrates by low-pressure metal-organic vapour phase epitaxy. The samples show ferromagnetic behaviour up to a temperature of T = 380 K with hysteresis curves showing a coercivity of 50-100Oe. No ferromagnetic second phases and no significant deterioration in crystal quality with the incorporation of Mn can be detected by high-resolution x-ray diffraction. The result of x-ray absorption near-edge structures indicates that Mn atoms substitute for Ga atoms. The Mn concentrations of the layers are determined to reach x = 0.038 by proton-induced x-ray emission.

  19. Attosecond nanotechnology: Quantum dots of nanoelectromechanical systems of CuInxGa1-xSe2 compounds

    Science.gov (United States)

    Beznosyuk, Sergey A.; Terentyeva, Yulia V.; Maslova, Olga A.; Zhukovsky, Mark S.; Volkov, Dmitrii A.

    2016-11-01

    In this paper the problem of stability of Cu(In,Ga)Se2 (CIGS) compounds as the continuous solid solution composition CuInxGa1-xSe2 with the structure of chalcopyrite in the state of quantum dots of nanoelectromechanical systems (NEMS) is studied. Variations of energy, geometry, and paired radial distribution functions of atoms of stable NEMS quantum dots of CIGS at the three temperatures 0, 77, and 293 K are investigated. It is revealed that the relative change in parameters of sustainable CIGS nanolayers in the state of NEMS quantum dots is nonlinearly dependent on the concentration of indium atoms in the system. We show that this behavior is a result of the significant difference of energy and lengths of In-Se and Ga-Se bonds of NEMSs in the first coordination sphere of selenium atoms.

  20. Growth of free-standing bulk wurtzite AlxGa1-xN layers by molecular beam epitaxy using a highly efficient RF plasma source

    Science.gov (United States)

    Novikov, S. V.; Staddon, C. R.; Sahonta, S.-L.; Oliver, R. A.; Humphreys, C. J.; Foxon, C. T.

    2016-12-01

    The recent development of group III nitrides allows researchers world-wide to consider AlGaN based light emitting diodes as a possible new alternative deep ultra-violet light source for surface decontamination and water purification. In this paper we will describe our recent results on plasma-assisted molecular beam epitaxy (PA-MBE) growth of free-standing wurtzite AlxGa1-xN bulk crystals using the latest model of Riber's highly efficient nitrogen RF plasma source. We have achieved AlGaN growth rates up to 3 μm/h. Wurtzite AlxGa1-xN layers with thicknesses up to 100 μm were successfully grown by PA-MBE on 2-inch and 3-inch GaAs (111)B substrates. After growth the GaAs was subsequently removed using a chemical etch to achieve free-standing AlxGa1-xN wafers. Free-standing bulk AlxGa1-xN wafers with thicknesses in the range 30-100 μm may be used as substrates for further growth of AlxGa1-xN-based structures and devices. High Resolution Scanning Transmission Electron Microscopy (HR-STEM) and Convergent Beam Electron Diffraction (CBED) were employed for detailed structural analysis of AlGaN/GaAs (111)B interface and allowed us to determine the N-polarity of AlGaN layers grown on GaAs (111)B substrates. The novel, high efficiency RF plasma source allowed us to achieve free-standing AlxGa1-xN layers in a single day's growth, making this a commercially viable process.

  1. Lattice damage and compositional changes in Xe ion irradiated InxGa1-xN (x = 0.32-1.0) single crystals

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Limin; Jiang, Weilin; Dissanayake, Amila C.; Peng, Jinxin; Ai, Wensi; Zhang, Jiandong; Zhu, Zihua; Wang, Tieshan; Shutthanandan, V.

    2016-06-27

    Lattice disorder and compositional changes in InxGa1-xN (x=0.32, 0.47, 0.7, 0.8 and 1.0) films on GaN/Al2O3 substrates, induced by room-temperature irradiation of 5 MeV Xe ions, have been investigated using both Rutherford backscattering spectrometry under ion-channeling conditions and time-of-flight secondary ion mass spectrometry. The results show that for a fluence of 3E13 cm-2, the relative level of lattice disorder in InxGa1-xN increases monotonically from 59% to 90% with increasing indium concentration x from 0.32 to 0.7; a further increase in x up to 1.0 leads to little increase in the disorder level. In contrast to Ga-rich InxGa1-xN (x=0.32 and 0.47), significant volume swelling of up to ~25% accompanied with oxidation in In-rich InxGa1-xN (x=0.7, 0.8 and 1.0) is observed. In addition, irradiation-induced atomic mixing occurs at the interface of In-rich InxGa1-xN and GaN. The results from this study indicate an extreme susceptibility of the high In-content InxGa1-xN to heavy-ion irradiation, and suggest that cautions must be exercised in applying ion-implantation techniques to these materials at room temperature. Further studies of the irradiation behavior at elevated temperatures are warranted.

  2. Lattice damage and compositional changes in Xe ion irradiated InxGa1-xN (x = 0.32-1.0) single crystals

    Science.gov (United States)

    Zhang, Limin; Jiang, Weilin; Dissanayake, Amila; Peng, Jinxin; Ai, Wensi; Zhang, Jiandong; Zhu, Zihua; Wang, Tieshan; Shutthanandan, Vaithiyalingam

    2016-06-01

    Lattice disorder and compositional changes in InxGa1-xN (x = 0.32, 0.47, 0.7, 0.8, and 1.0) films on GaN/Al2O3 substrates, induced by room-temperature irradiation of 5 MeV Xe ions, have been investigated using both Rutherford backscattering spectrometry under ion-channeling conditions and time-of-flight secondary ion mass spectrometry. The results show that for a fluence of 3 × 1013 cm-2, the relative level of lattice disorder in InxGa1-xN increases monotonically from 59% to 90% with increasing indium concentration x from 0.32 to 0.7; a further increase in x up to 1.0 leads to little increase in the disorder level. In contrast to Ga-rich InxGa1-xN (x = 0.32 and 0.47), significant volume swelling of up to ˜25% accompanied with oxidation in In-rich InxGa1-xN (x = 0.7, 0.8, and 1.0) is observed. In addition, irradiation-induced atomic mixing occurs at the interface of In-rich InxGa1-xN and GaN. The results from this study indicate an extreme susceptibility of the high In-content InxGa1-xN to heavy-ion irradiation, and suggest that cautions must be exercised in applying ion-implantation techniques to these materials at room temperature. Further studies of the irradiation behavior at elevated temperatures are warranted.

  3. Plant genotype-specific archaeal and bacterial endophytes but similar Bacillus antagonists colonize Mediterranean olive trees

    Directory of Open Access Journals (Sweden)

    Henry eMueller

    2015-03-01

    Full Text Available Endophytes have an intimate and often symbiotic interaction with their hosts. Less is known about the composition and function of endophytes in trees. In order to evaluate our hypothesis that plant genotype and origin have a strong impact on both, endophytes of leaves from 10 Olea europaea L. cultivars from the Mediterranean basin growing at a single agricultural site in Spain and from nine wild olive trees located in natural habitats in Greece, Cyprus and on Madeira Island were studied. The composition of the bacterial endophytic communities as revealed by 16S rRNA gene amplicon sequencing and the subsequent PCoA analysis showed a strong correlation to the plant genotypes. The bacterial distribution patterns were congruent with the plant origins in Eastern and Western areas of the Mediterranean basin. Subsequently, the endophytic microbiome of wild olives was shown to be closely related to those of cultivated olives of the corresponding geographic origins. The olive leaf endosphere harbored mostly Proteobacteria, followed by Firmicutes, Actinobacteria and Bacteroidetes. The detection of a high portion of archaeal taxa belonging to the phyla Thaumarchaeota, Crenarchaeota and Euryarchaeota in the amplicon libraries was an unexpected discovery, which was confirmed by quantitative real-time PCR revealing an archaeal portion of up to 35.8%. Although the function of these Archaea for their host plant remains speculative, this finding suggests a significant relevance of archaeal endophytes for plant-microbe interactions. In addition, the antagonistic potential of culturable endophytes was determined; all isolates with antagonistic activity against the olive-pathogenic fungus Verticillium dahliae Kleb. belong to Bacillus amyloliquefaciens. In contrast to the specific global structural diversity, BOX-fingerprints of the antagonistic Bacillus isolates were highly similar and independent of the olive genotype from which they were isolated.

  4. Interactions of Bacillus spp. and plants--with special reference to induced systemic resistance (ISR).

    Science.gov (United States)

    Choudhary, Devendra K; Johri, Bhavdish N

    2009-01-01

    Biological control of soil-borne pathogens comprises the decrease of inoculum or of the disease producing activity of a pathogen through one or more mechanisms. Interest in biological control of soil-borne plant pathogens has increased considerably in the last few decades, because it may provide control of diseases that cannot or only partly be managed by other control strategies. Recent advances in microbial and molecular techniques have significantly contributed to new insights in underlying mechanisms by which introduced bacteria function. Colonization of plant roots is an essential step for both soil-borne pathogenic and beneficial rhizobacteria. Colonization patterns showed that rhizobacteria act as biocontrol agents or as growth-promoting bacteria form microcolonies or biofilms at preferred sites of root exudation. Such microcolonies are sites for bacteria to communicate with each other (quorum sensing) and to act in a coordinated manner. Elicitation of induced systemic resistance (ISR) by plant-associated bacteria was initially demonstrated using Pseudomonas spp. and other Gram-negative bacteria. Several strains of the species Bacillus amyloliquefaciens, B. subtilis, B. pasteurii, B. cereus, B. pumilus, B. mycoides, and B. sphaericus elicit significant reductions in the incidence or severity of various diseases on a diversity of hosts. Elicitation of ISR by these strains has been demonstrated in greenhouse or field trials on tomato, bell pepper, muskmelon, watermelon, sugar beet, tobacco, Arabidopsis sp., cucumber, loblolly pine, and two tropical crops (long cayenne pepper and green kuang futsoi). Protection resulting from ISR elicited by Bacillus spp. has been reported against leaf-spotting fungal and bacterial pathogens, systemic viruses, a crown-rotting fungal pathogen, root-knot nematodes, and a stem-blight fungal pathogen as well as damping-off, blue mold, and late blight diseases. This progress will lead to a more efficient use of these strains which

  5. Composition Dependence of Surface Phonon Polariton Mode in Wurtzite InxGa1-xN (0 ≤ x ≤ 1) Ternary Alloy

    Institute of Scientific and Technical Information of China (English)

    S. S. Ng; Z. Hassan; H. Abu Hassan

    2008-01-01

    @@ We present a theoretical study on the composition dependence of the surface phonon polariton (SPP) mode in wurtzite structure α-Inx Ga1-xN ternary alloy over the whole composition range. The SPP modes are obtained by the theoretical simulations by means of an anisotropy model. The results reveal that the SPP mode of α-InxGa1-Xn semiconductors exhibits one-mode behaviour. From these data, composition dependence of the SPP mode with bowing parameter of -28.9 cm-1 is theoretically obtained.

  6. Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis

    OpenAIRE

    Anderson, Iain; Sorokin, Alexei; Kapatral, Vinayak; Reznik, Gary; Bhattacharya, Anamitra; Mikhailova, Natalia; Burd, Henry; Joukov, Victor; Kaznadzey, Denis; Walunas, Theresa; D'Souza, Mark; Larsen, Niels; Pusch, Gordon; Liolios, Konstantinos; Grechkin, Yuri

    2005-01-01

    Genome features of the Bacillus cereus group genomes (representative strains of Bacillus cereus, Bacillus anthracis and Bacillus thuringiensis sub spp israelensis) were analyzed and compared with the Bacillus subtilis genome. A core set of 1,381 protein families among the four Bacillus genomes, with an additional set of 933 families common to the B. cereus group, was identified. Differences in signal transduction pathways, membrane transporters, cell surface structures, cell wall, and S-...

  7. A genetically modified broad-spectrum strain of Bacillus thuringiensis toxic against Holotrichia parallela, Anomala corpulenta and Holotrichia oblita.

    Science.gov (United States)

    Jia, Yanhua; Zhao, Can; Wang, Qinglei; Shu, Changlong; Feng, Xiaojie; Song, Fuping; Zhang, Jie

    2014-02-01

    Cry8Ea1 from Bacillus thuringiensis strain Bt185 has insecticidal activity against Holotrichia parallela. Cry8Ca2 from strain HBF-1 is effective against Anomala corpulenta. Cry8Ga1 from strain HBF-18 is toxic to H. oblita. Given the need to broaden the spectrum of B. thuringiensis, a broad-spectrum coleopteran active strain of B. thuringiensis, BIOT185, engineered to express multiple cry genes, including cry8Ea1, cry8Fa1 and cry8Ca2, was created by homologous recombination introducing the cry8Ca2 into the B. thuringiensis strain Bt185 by Liu et al. (Appl Microbiol Biotechnol 87:243-249, 2010). To further broaden the spectrum, an engineered B. thuringiensis strain BIOT1858G was constructed by introducing the recombinant plasmid pSTK-8G containing cry8Ga1 into the engineered B. thuringiensis strain BIOT185. PCR and Southern blotting demonstrated that the cry8Ga1 gene was transferred to the novel strain BIOT1858G. SDS-PAGE and RT-PCR confirmed the normal expression and transcription of the cry8Ga1 gene in addition to the cry8Ea1, cry8Fa1 and cry8Ca2 genes. Bioassays of BIOT1858G indicated that the recombinant strain broadened the spectrum against not only H. parallela susceptible to the Cry8E protein and A. corpulenta susceptible to the Cry8C protein but also H. oblita susceptible to the Cry8G protein. The pesticide could also decrease the cost of production and field labor.

  8. Bacillus thuringiensis (Bt)

    Science.gov (United States)

    2004-01-01

    Bacillus thuringiensis (Bt), a natural bacteria found all over the Earth, has a fairly novel way of getting rid of unwanted insects. Bt forms a protein substance (shown on the right) that is not harmful to humans, birds, fish or other vertebrates. When eaten by insect larvae the protein causes a fatal loss of appetite. For over 25 years agricultural chemical companies have relied heavily upon safe Bt pesticides. New space based research promises to give the insecticide a new dimension in effectiveness and applicability. Researchers from the Consortium for Materials Development in Space along with industrial affiliates such as Abott Labs and Pern State University flew Bt on a Space Shuttle mission in the fall of 1996. Researchers expect that the Shuttle's microgravity environment will reveal new information about the protein that will make it more effective against a wider variety of pests.

  9. Binding Energy of Ionized-Donor-Bound Excitons in the GaAs-AlxGa1-xAs Quantum Wells

    Institute of Scientific and Technical Information of China (English)

    LIU Jian-Jun; ZHANG Shu-Fang; KONG Xiao-Jun; LI Shu-Shen

    2000-01-01

    The binding energy of an exciton bound to anionized donor impurity (D+, X) located at the center or the edgein GaAs-AlxGa1-xAs quantum wells is calculated variationally for the well width from 10 to 300 A by using atwo-parameter wave function, The theoretical results are discussed and compared with the previous experimentalresults.

  10. Electron microscopic and optical investigations of the indium distribution GaAs capped InxGa1-xAs islands

    DEFF Research Database (Denmark)

    Woggon, U.; Langbein, Wolfgang Werner; Hvam, Jørn Märcher;

    1997-01-01

    Results from a structural and optical analysis of buried InxGa1-xAs islands carried out after the process of GaAs overgrowth are presented. It is found that during the growth process, the indium concentration profile changes and the thickness of the wetting layer emanating from a Stranski-Krastan...

  11. Characteristics of cylindrical surrounding-gate GaAs x Sb1-x /In y Ga1-y As heterojunction tunneling field-effect transistors

    Science.gov (United States)

    Guan, Yun-He; Li, Zun-Chao; Luo, Dong-Xu; Meng, Qing-Zhi; Zhang, Ye-Fei

    2016-10-01

    A III-V heterojunction tunneling field-effect transistor (TFET) can enhance the on-state current effectively, and GaAs x Sb1-x /In y Ga1-y As heterojunction exhibits better performance with the adjustable band alignment by modulating the alloy composition. In this paper, the performance of the cylindrical surrounding-gate GaAs x Sb1-x /In y Ga1-y As heterojunction TFET with gate-drain underlap is investigated by numerical simulation. We validate that reducing drain doping concentration and increasing gate-drain underlap could be effective ways to reduce the off-state current and subthreshold swing (SS), while increasing source doping concentration and adjusting the composition of GaAs x Sb1-x /In y Ga1-y As can improve the on-state current. In addition, the resonant TFET based on GaAs x Sb1-x /In y Ga1-y As is also studied, and the result shows that the minimum and average of SS reach 11 mV/decade and 20 mV/decade for five decades of drain current, respectively, and is much superior to the conventional TFET. Project supported by the National Natural Science Foundation of China (Grant Nos. 61176038 and 61474093), the Science and Technology Planning Project of Guangdong Province, China (Grant No. 2015A010103002), and the Technology Development Program of Shaanxi Province, China (Grant No. 2016GY-075).

  12. Theoretical study of built-in-polarization effect on relaxation time and mean free path of phonons in Al$_x$Ga$_{1−x}$N alloy

    Indian Academy of Sciences (India)

    B K SAHOO; A PANSARI

    2016-12-01

    In this article we have investigated theoretically the effect of built-in-polarization field on various phonon scattering mechanisms in AlxGa1−xN alloy. The built-in-polarization field of AlxGa1−xN modifies the elastic constant,group velocity of phonons and Debye temperature. As a result, various phonon scattering mechanisms are changed. Important phonon scattering mechanisms such as normal scattering, Umklapp scattering, point defect scattering, dislocation scattering and phonon–electron scattering processes have been considered in the computation. The combined relaxation time due to above-mentioned scattering mechanisms has also been computed as afunction of phonon frequency for various Al compositions at room temperature. It is found that combined relaxation time is enhanced due to built-in-polarization effect and makes phonon mean free path longer, which is required forhigher optical, electrical and thermal transport processes. The result can be used to determine the effect of built-inpolarization field on optical and thermal properties of Al$_x$Ga$_{1−x}$N and will be useful, particularly, for improvementof thermoelectric performance of Al$_x$Ga$_{1−x}$N alloy through polarization engineering.

  13. Microbial community profiling of the Chinoike Jigoku ("Blood Pond Hell") hot spring in Beppu, Japan: isolation and characterization of Fe(III)-reducing Sulfolobus sp. strain GA1.

    Science.gov (United States)

    Masaki, Yusei; Tsutsumi, Katsutoshi; Hirano, Shin-Ichi; Okibe, Naoko

    2016-09-01

    Chinoike Jigoku ("Blood Pond Hell") is located in the hot spring town of Beppu on the southern island of Kyushu in Japan, and is the site of a red-colored acidic geothermal pond. This study aimed to investigate the microbial population composition in this extremely acidic environment and to isolate/characterize acidophilic microorganism with metal-reducing ability. Initially, PCR (using bacteria- and archaea-specific primers) of environmental DNA samples detected the presence of bacteria, but not archaea. This was followed by random sequencing analysis, confirming the presence of wide bacterial diversity at the site (123 clones derived from 18 bacterial and 1 archaeal genera), including those closely related to known autotrophic and heterotrophic acidophiles (Acidithiobacillus sp., Sulfobacillus sp., Alicyclobacillus sp.). Nevertheless, successive culture enrichment with Fe(III) under micro-aerobic conditions led to isolation of an unknown archaeal organism, Sulfolobus sp. GA1 (with 99.7% 16S rRNA gene sequence identity with Sulfolobus shibatae). Unlike many other known Sulfolobus spp., strain GA1 was shown to lack sulfur oxidation ability. Strain GA1 possessed only minor Fe(II) oxidation ability, but readily reduced Fe(III) during heterotrophic growth under micro-aerobic conditions. Strain GA1 was capable of reducing highly toxic Cr(VI) to less toxic/soluble Cr(III), demonstrating its potential utility in bioremediation of toxic metal species.

  14. Bacillus amly oliquefaciens Antimicrobial Effect on Pestalotipo sis guepini (Desm.) Stey%解淀粉芽孢杆菌对山茶灰斑病菌的抑制作用

    Institute of Scientific and Technical Information of China (English)

    张静; 冉晓潇; 朱天辉; 彭艳; 刘洋

    2014-01-01

    解淀粉芽孢杆菌( Bacillus amyloliquefaciens)及其分泌物对山茶灰斑病病原菌茶褐斑拟盘多毛孢( Pestalotiopsis guepini ( Desm.) Stey)具有较好的拮抗作用。采用正交试验法探究了碳源、氮源、pH值、温度、接种量等因子对解淀粉芽孢杆菌产拮抗物质的影响。结果表明:最佳碳、氮源分别为葡萄糖和蛋白胨。最佳优化条件为25℃、蛋白胨0.3 g、葡萄糖0.5 g、pH值6.0、每125 mL接种2 mL孢子悬液于300 mL锥形瓶中震荡培养。基于生长曲线的测定,通过研究解淀粉芽孢杆菌培养时间与代谢产物拮抗活性的关系,得到解淀粉芽孢杆菌对茶褐斑拟盘多毛孢的最佳作用时间为72 h,抑菌值达0.85。%Bacillus amyloliquefaciens and its antagonistic substance can effectively antagonize Pestalotiopsis guepini ( Desm.) Stey.By orthogonal design method , we studyied the effects of varied factors on antagonistic substance producing of B. amyloliquefaciens, including carbon source,nitrogen source , cultural pH, temperature, medium oxygen and inoculated volume.The optimal carbon source and nitrogen source were glucose and peptone , and the optimal fermentation conditions were with 28℃, pH of 7, peptone of 0.3 g, and 125 mL medium volume in 300 mL triangle flask bulk with 2 mL inocula-ting volume.By studying the growth curve and the relationship between culture time and antagonistic activities , we got the bactriostatic effect of B.amyloliquefaciens on P.guepini, and when the optimal reaction time was 72 h, the inhibiting rate was up to 85%.

  15. Ionized Acceptor Bound Exciton States in Wurtzite GaN/AlxGa1-xN Cylindrical Quantum Dot

    Institute of Scientific and Technical Information of China (English)

    郑冬梅; 王宗篪

    2012-01-01

    Based on the framework of the effective-mass approximation, the ionized acceptor bound exciton (A- X) binding energy and the emission wavelength are investigated for a cylindrical wurtzite (WZ) GaN/A1x Ga1-xN quantum dot (QD) with finite potential barriers by means of a variational method. Numerical results show that the binding energy and the emission wavelength highly depend on the QD size, the position of the ionized acceptor and the Al composition x of the barrier material AIxGal-xN. The binding energy and the emission wavelength are larger when the acceptor is located in the vicinity of the left interface of the QD. In particular, the binding energy of ( A-, X) complex is insensitive to the dot height when the acceptor is located at the left boundary of the QD. The ionized acceptor bound exciton binding energy and the emission wavelength are both increased if Al composition x is increased.

  16. The adsorption behavior and mechanism investigation of Pb(II) removal by flocculation using microbial flocculant GA1.

    Science.gov (United States)

    Feng, Jing; Yang, Zhaohui; Zeng, Guangming; Huang, Jing; Xu, Haiyin; Zhang, Yuanyuan; Wei, Shumei; Wang, Like

    2013-11-01

    In this work, microbial flocculant GA1 (MBFGA1) was used to remove Pb(II) ions from aqueous solution. A series of experimental parameters including initial pH, MBFGA1 dose, temperature and initial calcium ions concentration on Pb(II) uptake was evaluated. Meanwhile, the flocculation mechanism of MBFGA1 was investigated. The removal efficiency of Pb(II) reached up to 99.85% when MBFGA1 was added in two stages, separately. The results indicated that Pb(II) adsorption could be described by the Langmuir adsorption model, and being the monolayer capacity negatively affected with an increase in temperature. The adsorption process could be described by pseudo-second-order kinetic model. Fourier transform-infrared spectra and environmental scanning electron microscope analysis indicated that MBFGA1 had a large number of functional groups, which had strong capacity for removing Pb(II). The main mechanisms of Pb(II) removal by MBFGA1 could be charge neutralization and adsorption bridging.

  17. Heterojunction DDR THz IMPATT diodes based on AlxGa1-xN/GaN material system

    Science.gov (United States)

    Banerjee, Suranjana; Mitra, Monojit

    2015-06-01

    Simulation studies are made on the large-signal RF performance and avalanche noise properties of heterojunction double-drift region (DDR) impact avalanche transit time (IMPATT) diodes based on AlxGa1-xN/GaN material system designed to operate at 1.0 THz frequency. Two different heterojunction DDR structures such as n-Al0.4Ga0.6N/p-GaN and n-GaN/p-Al0.4Ga0.6N are proposed in this study. The large-signal output power, conversion efficiency and noise properties of the heterojunction DDR IMPATTs are compared with homojunction DDR IMPATT devices based on GaN and Al0.4Ga0.6N. The results show that the n-Al0.4Ga0.6N/p-GaN heterojunction DDR device not only surpasses the n-GaN/p-Al0.4Ga0.6N DDR device but also homojunction DDR IMPATTs based on GaN and Al0.4Ga0.6N as regards large-signal conversion efficiency, power output and avalanche noise performance at 1.0 THz.

  18. Scattering mechanisms of highest-mobility InAs /AlxGa1 -xSb quantum wells

    Science.gov (United States)

    Tschirky, T.; Mueller, S.; Lehner, Ch. A.; Fält, S.; Ihn, T.; Ensslin, K.; Wegscheider, W.

    2017-03-01

    We study molecular beam epitaxially grown undoped AlxGa1 -xSb /InAs/AlSb quantum wells with different buffer and barrier designs and varying quantum well width. The highest mobilities were achieved with Al0.33Ga0.67Sb buffers and lower barriers and a quantum well width of 24 nm. These quasi-single-interface InAs/AlSb quantum well devices reached a gate-tuned mobility of 2.4 ×106cm2 /V s at a density of 1 ×1012cm-2 and 1.3 K. In Hall bar devices boundary scattering is found to strongly influence the mobility determination in this mobility regime. Ionized background impurity scattering at low electron densities, device boundary scattering at intermediate electron densities, and intersubband scattering at high electron densities were identified as the most likely dominant scattering processes. Ringlike structures in the Landau fan can be explained using a single-particle model of crossing Landau levels.

  19. Effect of Indium Ambient on Electrical Properties of Mg-Foped AlxGa1-xN

    Institute of Scientific and Technical Information of China (English)

    XU Zheng-Yu; SUN Wei-Guo; QIN Zhi-Xin; SANG Li-Wen; ZHANG Yan-Zhao; SHEN Bo; ZHANG Guo-Yi; ZHAO Lan; ZHANG Xiang-Feng; CHENG Cai-Jing

    2010-01-01

    @@ Mg-doped AlxGa1-xN epilayers were grown on AlN/sapphire templates by metal organic chemical vapor deposition (MOCVD)using an indium-assisted growth method.At room temperature,the resistivity of Mg-doped Al0.43Ga0.57N epilayer grown under indium(In)ambient is of the order of 104 Ω·cm,while the resistivity of Mg-doped Al0.43Ga0.57N grown without In assistance is of the order of 106 Ω·cm.The ultraviolet light-emitting diodes(UV-LEDs)using the In-assisted Mg-doped Al0.43Ga0.57 N as the p-type layers were fabricated to verify the function of indium ambient.It is found that there are a lower turn-on voltage and a lower diode series resistance in the UV-LEDs fabricated with p-type A10.43Ga0.57N layers grown under In-ambient.

  20. Structural and optical properties of CuInxGa1-xSe2 thin films prepared by flash evaporation

    Science.gov (United States)

    Benslim, N.; Cowache, P.; Hannech, E. B.; Benabdeslem, M.; Béchiri, L.; Mahdjoubi, L.

    2002-11-01

    CuInxGa1-xSe2 (CIGSe) thin films with x = 0.5 and 0.75 were deposited by a single source vacuum thermal evaporated method 'Flash' on molybdenum coated glass. Some of these films were annealed in selenium atmosphere. X-ray diffraction and energy dispersive x-ray measurements have indicated that these films contain exclusively a phase with a chalcopyrite structure. The morphology, grain distributions and composition of the CIGSe films were studied and compared for x = 0.5 and x = 0.75. The optical studies have shown that the films are highly absorbing (7 × 104 cm-1). The absorption edge is shifted to high photon energies when the gallium concentration is increased. After selenization, the bandgaps increase from 1.00 eV to 1.18 eV for x = 0.75 and from 1.16 eV to 1.28 eV for x = 0.5.

  1. Direct measurement of DX-centre related lattice relaxations in Al$_{x}$Ga$_{1-x}$As compounds

    CERN Document Server

    2002-01-01

    Donor impurities from elements of group IV and VI form localized electronic states, so-called DX-centers, in AlGaAs and other semiconductors. One of the well known effects related to DX-centers is the persistent photoconductivity. In spite of extensive studies, the microscopic structure of the DX-center is still a matter of controversy. The direct determination of the donor lattice sites and their microscopical surrounding is a crucial point in understanding the relation of microscopic structure to the localized electronic state of the DX-center.\\\\ It is proposed to implant radioactive group VI elements $^{73}$Se (from $^{73}$Br) and $^{118}$Te (from $^{118}$Xe) into Al$_{x}$Ga$_{1-x}$As of different mole fractions ${x}$ and to determine (i) the lattice site of Te and Se impurities by emission channeling of decay positrons and electrons (ii) the local structure of Se impurities using the perturbed $\\gamma$-$\\gamma$-angular correlation technique (PAC). The appearance of the DX-center shall be check...

  2. The optimization of Ga (1-x)Al (x)As-GaAs solar cells for air mass zero operation and a study of Ga (1-x)Al (x)As-GaAs solar cells at high temperatures, phase 1

    Science.gov (United States)

    Hovel, H. J.; Woodall, J. M.

    1976-01-01

    The three types of solar cells investigated were: (1) one consisting of a nGaAs substrate, a Zn doped pGaAs region, and a Zn doped Ga(1-x)Al(x)As layer, (2) one consisting of an nGaAs substrate, a Ge doped pGaAs region, and a pGa(1-x)Al(x)As upper layer, and (3) one consisting of an n+GaAs substrate, an nGa(1-x)Al(X)As region, a pGa(1-x)Bl(X) As region, and a pGa(1-y)Al(y)As upper layer. In all three cases, the upper alloy layer is thin and of high Al composition in order to obtain high spectral response over the widest possible range of photon energies. Spectral response, capacitance-voltage, current-voltage, diffusion length, sunlight (or the equivalent)-efficiency, and efficiency-temperature measurements were made as a function of device parameters in order to analyze and optimize the solar cell behavior.

  3. 高抑制比背照式AlxGa1-xN pin日盲紫外探测器研究%Study on Back-illuminated AlxGa1-xN pin Solar-blind UV Photodetectors with High Rejection Ratio

    Institute of Scientific and Technical Information of China (English)

    赵文伯; 许华胜; 申志辉; 叶嗣荣; 周勋; 李艳炯; 黄烈云

    2014-01-01

    利用现有外延材料生长技术和器件工艺技术,生长了背照式AlxGa1-xN pin外延材料,并用生长的材料制作了日盲紫外探测器,测试结果表明器件在0V偏压下抑制比达到了6 400.在此基础上,较详细地分析了偏置电压、p-AlxGa1-xN载流子浓度和Al组分、极化效应对背照式AlxGa1-xN pin日盲紫外探测器抑制比的影响及非日盲先生载流子的限制机制.分析表明,提高p-AlxGa1-xN载流子浓度和GaN/AlxGa1-xN异质结极化强度是现有技术条件下提高器件抑制比的有效途径.

  4. Effect of barrier height on spectral characteristics of GaAs/AlxGa1-xAs QWIP%势垒高度对GaAs/AlxGa1-xAs QWIP光谱特性的影响

    Institute of Scientific and Technical Information of China (English)

    胡小英; 刘卫国; 段存丽; 蔡长龙; 牛小玲

    2015-01-01

    A comprehensive analysis on the relationship between the barrier height and the peak wavelength of bound-to-quasi-continuum Quantum Well Infrared Photodetector (QWIP) was demonstrated, together with its effect on characterization of microstructure and macroscopic optic properties of the device-sample. The GaAs/AlxGa1-xAs infrared quantum well material was produced via the method of Metal Organic Chemical Vapor Deposition(MOVCD). Two sample devices with different Al content(0.23 and 0.32) was designed respectively and their corresponding spectral responses were measured via Fourier Transform Spectrometer at the temperature of 77 K. The experimental results shown that sample 1# and 2# are with the peak wavelengths of 8.36 μm and 7.58 μm, which present obvious difference to the theoretical results based on Schrodinger equation (9.672μm and 7.928μm, corresponding to errors of 15.6% and 4.6%, respectively). By analyzing the effect of Al atoms diffusion length, it is found that the decrease of Al content is the key effect which leads to sub-band narrow down and peak wavelength red shift. Meanwhile, by using the method of High Resolution Transmission Electron Microscopy(HRTEM), it is found that the strong error of sample 1# is mainly due to the crystal lattice mismatch between GaAs and AlGaAs, together with the unsatisfied precise control during the growth of quantum well material. Above analysis demonstrates that adjusting the Al content of barrier height is an effective method to turn the peak wavelength of QWIP.%为了确定束缚态到准束缚态工作模式QWIP响应波长与势垒高度关系,采用金属有机物化学气相沉积法生长制备势垒高度不同GaAs/AlxGa1-xAs QWIP样品,采用傅里叶光谱仪对样品进行77 K液氮温度光谱测试.结果显示1#,2#样品峰值响应波长与据薛定谔方程得到峰值波长误差为15.6%, 4.6%.结果表明:引起量子阱中子带间距离逐渐扩大与峰值响应波长蓝移的根本原因是势

  5. Bacillus novalis sp. nov., Bacillus vireti sp. nov., Bacillus soli sp. nov., Bacillus bataviensis sp. nov. and Bacillus drentensis sp. nov., from the Drentse A grasslands.

    Science.gov (United States)

    Heyrman, Jeroen; Vanparys, Bram; Logan, Niall A; Balcaen, An; Rodríguez-Díaz, Marina; Felske, Andreas; De Vos, Paul

    2004-01-01

    A group of 42 isolates were isolated from the soil of several disused hay fields, in the Drentse A agricultural research area (The Netherlands), that were taken out of production at different times. The group represents hitherto-uncultured Bacillus lineages that have previously been found, by a non-cultural method, to be predominant in soil. The strains were subjected to a polyphasic taxonomic study, including (GTG)5-PCR, 16S rDNA sequence analysis, DNA-DNA hybridizations, DNA base-ratio determination, fatty acid analysis and morphological and biochemical characterization. By comparing the groupings obtained by (GTG)5-PCR and 16S rDNA sequence analysis, six clusters of similar strains could be recognized. A DNA-DNA relatedness study showed that these clusters represented five novel genospecies. Further analysis supported the proposal of five novel species in the genus Bacillus, namely Bacillus novalis sp. nov. (type strain IDA3307T=R-15439T=LMG 21837T=DSM 15603T), Bacillus vireti sp. nov. (type strain IDA3632T=R-15447T=LMG 21834T=DSM 15602T), Bacillus soli sp. nov. (type strain IDA0086T=R-16300T=LMG 21838T=DSM 15604T), Bacillus bataviensis sp. nov. (type strain IDA1115T=R-16315T=LMG 21833T=DSM 15601T) and Bacillus drentensis sp. nov. (type strain IDA1967T=R-16337T=LMG 21831T=DSM 15600T).

  6. Extracellular Ribonuclease from Bacillus licheniformis (Balifase, a New Member of the N1/T1 RNase Superfamily

    Directory of Open Access Journals (Sweden)

    Yulia Sokurenko

    2016-01-01

    Full Text Available The N1/T1 RNase superfamily comprises enzymes with well-established antitumor effects, such as ribotoxins secreted by fungi, primarily by Aspergillus and Penicillium species, and bacterial RNase secreted by B. pumilus (binase and B. amyloliquefaciens (barnase. RNase is regarded as an alternative to classical chemotherapeutic agents due to its selective cytotoxicity towards tumor cells. New RNase with a high degree of structural similarity with binase (73% and barnase (74% was isolated and purified from Bacillus licheniformis (balifase, calculated molecular weight 12421.9 Da, pI 8.91. The protein sample with enzymatic activity of 1.5 × 106 units/A280 was obtained. The physicochemical properties of balifase are similar to those of barnase. However, in terms of its gene organization and promoter activity, balifase is closer to binase. The unique feature of balifase gene organization consists in the fact that genes of RNase and its inhibitor are located in one operon. Similarly to biosynthesis of binase, balifase synthesis is induced under phosphate starvation; however, in contrast to binase, balifase does not form dimers under natural conditions. We propose that the highest stability of balifase among analyzed RNase types allows the protein to retain its structure without oligomerization.

  7. Isolation and identification of Bacillus spp. from compost material, compost and mushroom casing soil active against Trichoderma spp.

    Directory of Open Access Journals (Sweden)

    Stanojević Olja

    2016-01-01

    Full Text Available The isolation of bacteria was carried out from samples of straw and chicken manure, compost at various stages of the composting process and casing soil used for growing button mushrooms. A preliminary screening of 108 bacterial isolates for antagonistic activity against Trichoderma aggressivum f. europaeum showed that 23 tested isolates inhibited mycelial growth of the pathogenic fungus. Further screening with four indicator isolates of fungi revealed that all 23 bacterial isolates inhibited the growth of T. aggressivum f. europaeum, T. harzianum and T. koningii, while only 13 isolates inhibited the growth of T. atroviride. T. aggressivum f. europaeum proved to be the most sensitive, with many bacterial isolates generating a high percentage of growth inhibition. Only two bacterial isolates (B-129 and B-268 were successful in inhibiting the growth of all 4 tested pathogens. All 23 bacterial isolates were characterized as Gram-positive and catalase-positive and were subjected to molecular identification based on the partial sequence, the hypervariant region of the 16S rDNA. It was shown that the obtained bacterial strains belong to Bacillus subtilis, B. amyloliquefaciens, B. licheniformis and B. pumilus species. [Projekat Ministarstva nauke Republike Srbije, br. 31043 i br. 173026

  8. Extracellular Ribonuclease from Bacillus licheniformis (Balifase), a New Member of the N1/T1 RNase Superfamily

    Science.gov (United States)

    Nadyrova, Alsu; Ulyanova, Vera; Ilinskaya, Olga

    2016-01-01

    The N1/T1 RNase superfamily comprises enzymes with well-established antitumor effects, such as ribotoxins secreted by fungi, primarily by Aspergillus and Penicillium species, and bacterial RNase secreted by B. pumilus (binase) and B. amyloliquefaciens (barnase). RNase is regarded as an alternative to classical chemotherapeutic agents due to its selective cytotoxicity towards tumor cells. New RNase with a high degree of structural similarity with binase (73%) and barnase (74%) was isolated and purified from Bacillus licheniformis (balifase, calculated molecular weight 12421.9 Da, pI 8.91). The protein sample with enzymatic activity of 1.5 × 106 units/A280 was obtained. The physicochemical properties of balifase are similar to those of barnase. However, in terms of its gene organization and promoter activity, balifase is closer to binase. The unique feature of balifase gene organization consists in the fact that genes of RNase and its inhibitor are located in one operon. Similarly to biosynthesis of binase, balifase synthesis is induced under phosphate starvation; however, in contrast to binase, balifase does not form dimers under natural conditions. We propose that the highest stability of balifase among analyzed RNase types allows the protein to retain its structure without oligomerization. PMID:27656652

  9. Structural and Optical Investigations of Heterostructures Based on AlxGa1-xAsyP1-y:Si Solid Solutions Obtained by MOCVD

    Directory of Open Access Journals (Sweden)

    P. V. Seredin

    2014-01-01

    Full Text Available We investigated MOCVD epitaxial heterostructures based on AlxGa1−xAs ternary solid solutions, obtained in the range of compositions x~0.20–0.50 and doped with high concentrations of phosphorus and silicon atoms. Using the methods of high-resolution X-ray diffraction, scanning electron microscopy, X-ray microanalysis, Raman spectroscopy, and photoluminescence spectroscopy we have shown that grown epitaxial films represent five-component (AlxGa1−xAs1−yPy1−zSiz solid solutions. The implementation of silicon in solid solution with a concentration of ~ 0.01 at.% leads to the formation of the structure with deep levels, DX centers, the occurrence of which fundamentally affects the energy characteristics of received materials.

  10. Studying structural, electronic and optical properties of zinc-blende Ga1-x Al x P at normal and under pressure by means of first principle

    Science.gov (United States)

    Moussa, R.; Abdiche, A.; Khenata, R.; Rai, D. P.; Ahmed, W. K.; Omran, S. Bin; Murtaza, G.; Soyalp, F.

    2015-10-01

    Structural, electronic and optical properties of the zinc-blende Ga1-x Al x P ternary alloys with their ordered AlP and GaP binary compounds have been investigated, using the full potential linearized augmented plane wave method in conjunction with the density functional theory. The total energies are carried out to calculate the lattice constant, bulk modulus and its pressure derivative of the zinc-blende AlP, GaP binary compounds and their corresponding ternary Ga1-x Al x P solid solutions for the compositions (x = 0.25, 0.50 and 0.75). The band gap energies and the optical properties of these materials are investigated at normal pressure condition as well as under high pressure levels. The estimated results obtained from this work are justified, discussed and compared with the experimental data and other available theoretical works.

  11. Dependence of third-order nonlinear susceptibility on strain induced piezoelectric field in InxGa1-xN/GaN quantum well

    Institute of Scientific and Technical Information of China (English)

    Yaochen Bai(白瑶晨); Jingliang Liu(刘景良); Duanzheng Yao(姚端正)

    2004-01-01

    The third-order susceptibility of InxGa1-xN/GaN quantum well (QW) has been investigated by taking into account the strain-induced piezoelectric (PZ) field, and the effective-mass SchrSdinger equation is solved numerically. It is shovn that the third-order susceptibility for third harmonic generation (THG)of InxGa1-x,N/GaN QW is related to indium content in QW and the intensity of the PZ field. The characteristics ofX(3)THG(-3ω,(3) ω, ω,ω) as the function of the wavelength of incident beam, well width and indium content, have been analyzed.

  12. Investigation on Photoluminescence of Ordered Structure in the (AlxGa1-x)0.51In0.49P(x= 0.29) Alloys

    Institute of Scientific and Technical Information of China (English)

    LU Yi-Jun; GAO Yu-Lin; ZHENG Jian-Sheng

    2000-01-01

    The temperature-dependent and excitation-intensity-dependent photoluminescence(PL) spectra are applied to investigate the quaternary (AlxGa1-x)0.51In0.49P(x = 0.29) alloys lattice-matched to GaAs. The PL peak is excitation intensity independent, but shows anomalous temperature behavior, where PL peak energy changes with temperature, exhibiting Z-shape dependence. The PL peak energy decreases with increasing temperaturefrom 19K, a blue-shift of PL peak energy occurs between 55K and 84K, afterwards, the PL peak energy de creases monotonously again. This confirms the existence of ordered structure caused by superlattice effect in the(Alx Ga1_x)0.51In0.49P(x = 0.29) alloys.

  13. Exchange Enhancement of Spin-Splitting in AlxGa1-xN/GaN Heterostructures in Tilted Magnetic Fields

    Institute of Scientific and Technical Information of China (English)

    TANG Ning; HAN Kui; LU Fang-Chao; DUAN Jun-Xi; XU Fu-Jun; SHEN Bo

    2011-01-01

    Alx Ga1-xN/GaN heterostructures are investigated by magnetotransport experiments in tilted magnetic fields at low temperatures.The spin-split peaks of the Shubnikov-de Haas(SdH)oscillations are observed at high magnetic fields, which are attributed to the Zeeman spin-splitting of the two-dimensional electron gas at the heterointerface. The exchange enhanced g* of the spin-splitting is investigated by measuring the positions of the pairs of spin-split SdH maxima. Moreover, it is found that g* becomes smaller with the increasing tilt angle,which suggests the anisotropy of g* is due to the strong polarization-induced electric field at the Alx Ga1-xN/GaN heterointerface.

  14. To Study the Effect of Grating Length on Propagating Modes in Bragg Filters with AlxGa1-xN/GaN Material Composition

    CERN Document Server

    Banerji, Sourangsu

    2013-01-01

    In this paper, the forward and backward propagating modes in an optical waveguide structure namely the fiber Bragg filter also considered as a one dimensional photonic crystal, are analytically computed as a function of grating length for coupled optical modes. AlxGa1-xN/GaN material composition is considered as a unit block of the periodic organization, and refractive index of AlxGa1-xN/GaN is taken to be dependent on material composition, bandgap and operating wavelength following Adachis' model. Expressions of propagating wave are derived using coupled mode theory. Simulated results help us to study the propagation of forward and backward wave propagating modes inside fiber and waveguide devices.

  15. Ab initio based atomic scattering amplitudes and {002} electron structure factors of InxGa1-xAs/GaAs quantum wells

    Science.gov (United States)

    Titantah, J. T.; Lamoen, D.; Schowalter, M.; Rosenauer, A.

    2010-02-01

    The atomic scattering amplitudes of the various atoms of the systems Ga1-xInxAs, GaAs1-xNx and InAs1-xNx are calculated using the density functional theory (DFT) approach. The scattering amplitudes of N, Ga, As and In in the model systems are compared with the frequently used Doyle and Turner values. Deviation from the latter values is found for small scattering vectors (sMASAs) for small scattering vectors (sMASAs are exploited within zero pressure classical Metropolis Monte Carlo (MC), finite temperature calculations to investigate the effect of quantum well size on the electron {002} structure factor (SF) of Ga1-xInxAs quantum wells.

  16. Intrinsic radiative recombination from quantum states in GaAs-Aℓ xGa 1-xAs multi-quantum well structures

    Science.gov (United States)

    Weisbuch, C.; Miller, R. C.; Dingle, R.; Gossard, A. C.; Wiegman, W.

    1981-01-01

    From absorption, emission, luminescence excitation and electron spin orientation studies of undoped GaAs-Aℓ xGa 1-xAs superlattices we demonstrate the intrinsic nature of the radiative recombination process. This is in direct contrast to recombination observed in similar purity thick GaAs material. Moreover, our results do not support a recent suggestion that enhanced LO phonon-electron coupling should occur in such superlattice structures.

  17. Effect of Tm3+-Induced Defects on the Photoexcitation Energy Relaxation in Tm-Doped AlxGa1-xN

    Science.gov (United States)

    2009-03-27

    band-to-band transitions Fig. 4a just slightly blueshifts with decreasing temperature from 300 to 85 K. The part of the PLE spectra related to the...the additional absorption band associated with Tm3+-induced defects is unusually big. The blueshift observed for AlxGa1−xN hosts with x=0.39 and 0.62 is

  18. The effect of δ-doping and modulation-doping on Si-doped high Al content n-AlxGa1-xN grown by MOCVD

    Institute of Scientific and Technical Information of China (English)

    Zhu Shaoxin; Yan Jianchang; Zeng Jianping; Zhang Ning; Si Zhao; Dong Peng; Li Jinmin

    2013-01-01

    The effect of periodic delta-doping and modulation-doping on high Al content n-AlxGa1-xN (x =0.55) epilayers grown by MOCVD has been investigated.Measured by XRD,AFM,contactless sheet resistance,and Hall-effect tests,δ-doped and modulation-doped n-AlxGa1-xN have better crystal quality,surface morphology and electrical properties as compared with uniformly-doped n-AlxGa1-xN.These improvements are attributed to the SiNx growth mask induced by δ-doping layers and the dislocation-blocking effect induced by both growth techniques.In addition,due to the broadened doping profile ascribed to enhanced dopant diffusion at high growth temperatures (1150 ℃) of n-Al0.55Ga0.45N,modulation-doped n-Al0.55Ga0.45N has similar properties as δ-doped n-Al0.55Ga0.45N.

  19. Schottky barrier height of Ni to β-(AlxGa1‑x)2O3 with different compositions grown by plasma-assisted molecular beam epitaxy

    Science.gov (United States)

    Ahmadi, Elaheh; Oshima, Yuichi; Wu, Feng; Speck, James S.

    2017-03-01

    Coherent β-(AlxGa1‑x)2O3 films (x = 0, 0.038, 0.084, 0.164) were grown successfully on a Sn-doped β-Ga2O3 (010) substrate using plasma-assisted molecular beam epitaxy. Atom probe tomography, transmission electron microscopy, and high resolution x-ray diffraction were used to verify the alloy composition and high quality of the films. Schottky diodes were then fabricated using Ni as the Schottky metal. Capacitance–voltage measurements revealed a very low (current–voltage (I–V) measurements performed at temperatures varying from 300 K to 500 K on the Schottky diodes. These measurements revealed that the apparent Schottky barrier height could have similar values for different compositions of β-(AlxGa1‑x)2O3. We believe this is attributed to the lateral fluctuation in the alloy’s composition. This results in a lateral variation in the barrier height. Therefore, the average Schottky barrier height extracted from I–V measurements could be similar for β-(AlxGa1‑x)2O3 films with different compositions.

  20. Piezoelectric effects of single-crystal GaAs and multi-layered AlxGa1-xAs/GaAs material measured by the Michelson interferometer

    Directory of Open Access Journals (Sweden)

    Patara Aiyarak

    2003-09-01

    Full Text Available The inverse piezoelectric effect, in which the strains were electrically induced, in a single crystal of GaAs and in a multilayer structure of AlxGa1-xAs/GaAs was measured using a simple optical system, i.e., Michelson interferometer. An ac driving voltage was applied to the sample to produce a change in the order of 10-13 m in sample thickness. These changes were detected by the optical system to give the sample displacement as a function of applied driving voltage. The slope of the plot of this relationship led to the piezoelectric coefficients of (2.8±0.1×10-12 and (3.9±0.1×10-12 m/V for GaAs and AlxGa1-xAs/GaAs, respectively. The first agreed well with reported values and the latter was the first report for AlxGa1-xAs/GaAs. Owing to the equality for the inverse effect and the direct effect, in which an electric field can be mechanically induced, it is anticipated that in the absence of external electric field, the internal piezoelectric field can be induced in the multi-layered semiconductor.

  1. The influence of In composition on properties of InxGa1-xAs/GaAs structures grown by MOVPE and in situ monitored by spectral reflectance

    Science.gov (United States)

    Bedoui, M.; Habchi, M. M.; Moussa, I.; Rebey, A.

    2017-01-01

    Series of InxGa1-xAs/GaAs structures with indium vapor composition ranging from 13 to 100%, denoted samples A, B, C and D, were grown by metalorganic vapor phase epitaxy (MOVPE) at 450 °C and in situ monitored by spectral reflectance (SR). In order to contribute to the enhancement of crystal quality and to understand growth kinetic of InxGa1-xAs/GaAs structures, the dependence of structural and morphological properties on indium composition x was studied. Basing on high resolution x-ray diffraction (HRXRD) measurements, solid indium compositions x of samples A, B, C and D were determined. Also, the evolution of structural quality (dislocations density, grain size, etc.) as a function of indium composition x was quantified. Besides, morphological properties (hatching and islands formations, densities, sizes and uniformities, RMS surface roughness, etc.) and growth process (growth anisotropy, etc.) versus indium composition x were examined using atomic force microscopy (AFM) analysis. Also, reflectance three-dimensional plot as function of time and wavelength was recorded to quantify the evolution of reflectivity in the wavelength range from 400 to 1000 nm and to determine some growth parameters such as growth rates and thicknesses of InxGa1-xAs samples. A good correlation between experimental results issued from different characterizations tools was obtained.

  2. Phages Preying on Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis: Past, Present and Future

    Directory of Open Access Journals (Sweden)

    Annika Gillis

    2014-07-01

    Full Text Available Many bacteriophages (phages have been widely studied due to their major role in virulence evolution of bacterial pathogens. However, less attention has been paid to phages preying on bacteria from the Bacillus cereus group and their contribution to the bacterial genetic pool has been disregarded. Therefore, this review brings together the main information for the B. cereus group phages, from their discovery to their modern biotechnological applications. A special focus is given to phages infecting Bacillus anthracis, B. cereus and Bacillus thuringiensis. These phages belong to the Myoviridae, Siphoviridae, Podoviridae and Tectiviridae families. For the sake of clarity, several phage categories have been made according to significant characteristics such as lifestyles and lysogenic states. The main categories comprise the transducing phages, phages with a chromosomal or plasmidial prophage state, γ-like phages and jumbo-phages. The current genomic characterization of some of these phages is also addressed throughout this work and some promising applications are discussed here.

  3. Coaxial In(x)Ga(1-x)N/GaN multiple quantum well nanowire arrays on Si(111) substrate for high-performance light-emitting diodes.

    Science.gov (United States)

    Ra, Yong-Ho; Navamathavan, R; Park, Ji-Hyeon; Lee, Cheul-Ro

    2013-08-14

    We report the growth of high-quality nonpolar (m-plane) and semipolar (r-plane) multiple quantum well (MQW) nanowires (NWs) for high internal quantum efficiency light emitting diodes (LEDs) without polarization. Highly aligned and uniform In(x)Ga(1-x)N/GaN MQW layers are grown coaxially on the {1-100} sidewalls of hexagonal c-axis n-GaN NWs on Si(111) substrates by a pulsed flow metal-organic chemical vapor deposition (MOCVD) technique. The photoluminescence (PL) measurements reveal that the wavelength and intensity of an MQW structure with various pairs (2-20) are very stable and possess composition-dependent emission ranging from 369 to 600 nm. The cathodoluminescence (CL) spectrum of individual In(x)Ga(1-x)N/GaN MQW NW is dominated by band-edge emission at 369 and 440 nm with a relatively homogeneous profile of parallel alignment. High-resolution transmission electron microscopy (HR-TEM) studies of coaxial InxGa1-xN/GaN MQW NWs measured along the [0001] and [2-1-10] zone axes reveal that the grown NWs are uniform with six nonpolar m-plane facets without any dislocations and stacking faults. The p-GaN/In(x)Ga(1-x)N/GaN MQW/n-GaN NW coaxial LEDs show a current rectification with a sharp onset voltage at 2.65 V in the forward bias. The linear enhancement of power output could be attributed to the elimination of piezoelectric fields in the In(x)Ga(1-x)N/GaN MQW active region. The superior performance of coaxial NW LEDs is observed in comparison with that of thin film LEDs. Overall, the feasibility of obtaining low defect and strain free m-plane coaxial NWs using pulsed MOCVD can be utilized for the realization of high-power LEDs without an efficiency droop. These kinds of coaxial NWs are viable high surface area MQW structures which can be used to enhance the efficiency of LEDs.

  4. Combined Bacillus licheniformis and Bacillus subtilis infection in a patient with oesophageal perforation.

    Science.gov (United States)

    Jeon, You La; Yang, John Jeongseok; Kim, Min Jin; Lim, Gayoung; Cho, Sun Young; Park, Tae Sung; Suh, Jin-Tae; Park, Yong Ho; Lee, Mi Suk; Kim, Soo Cheol; Lee, Hee Joo

    2012-12-01

    Species of the genus Bacillus are a common laboratory contaminant, therefore, isolation of these organisms from blood cultures does not always indicate infection. In fact, except for Bacillus anthracis and Bacillus cereus, most species of the genus Bacillus are not considered human pathogens, especially in immunocompetent individuals. Here, we report an unusual presentation of bacteraemia and mediastinitis due to co-infection with Bacillus subtilis and Bacillus licheniformis, which were identified by 16S RNA gene sequencing, in a patient with an oesophageal perforation.

  5. Identification of a Bacillus strain producing alkaline protease%产碱性蛋白酶芽孢杆菌的鉴定

    Institute of Scientific and Technical Information of China (English)

    黄继翔

    2011-01-01

    通过测量比较在碱性蛋白平板上产生的蛋白水解圈直径,从土壤中筛选到一株高产蛋白酶菌株Bacillus sp.HFBL0079,根据生理生化特性,16S rDNA序列,鉴定为B.amyloliquefaciens.其最适培养温度为35℃-37℃,最适生长pH 8.0,在特定培养条件下16 h达到稳定期,菌体生长和蛋白酶合成同步进行.以大豆分离蛋白为氮源时发酵液具有最高酶活.发酵液在pH 10时具有最高酶活,表明为碱性蛋白酶.该菌株产生的碱性蛋白酶可水解多种天然蛋白质,对胶原蛋白水解度高于其他蛋白质,对羽毛角蛋白也有一定水解能力,提示该酶具有一定新颖性.%A protease producing spore-forming strain named HFBL0079 was islated from soil by measuring clearing zone in alkaline casein plate. Bacillus sp. HFBL0079 was identified as B. amyloliquefaciens by phenotypic properties and 16S rDNA sequence. Its optimal growth temperature was 35 ℃-37 ℃ and initial pH was 8.0. Protease activity increased quickly in log phase in accord with biomass and was steady in stationary phase, the maximal value was found in 16 hours. The highest protease activity was found when nitrogen source was soy protein isolate. The protease was alkaline protease because the highest activity was shown in pH 10. The alkaline protease was shown activity to multi substrate, the highest hydrolysis degree was found in collagen (42.3%) more than casein, oval bumin, BSA, and the hydrolysis degree of keratin was 15.3%, these results indicated the alkaline protease had some novel properties.

  6. Photothermal spectroscopy of Bacillus anthracis and Bacillus cereus with microcantilevers

    Energy Technology Data Exchange (ETDEWEB)

    Wig, Andrew G [ORNL; Arakawa, Edward T [ORNL; Passian, Ali [ORNL; Ferrell, Thomas L [ORNL; Thundat, Thomas George [ORNL

    2006-03-01

    Microcalorimetric optical and infrared spectroscopy is a method of determining the spectral absorption of small quantities of materials over a wide range of incident wavelengths. In this paper, the first spectroscopic results for microcantilevers coated with Bacillus anthracis (BA) are presented. These results, for B. anthracis from 2.5 to 14.5 {micro}m, are compared with results from microcantilevers coated with Bacillus cereus (BC) and standard spectroscopic absorption data. The results demonstrate strong correlation between the deflection measurements and the reference spectroscopic absorption peaks. An advantage of this microcantilever-based method over traditional spectroscopy is that much smaller amounts of material (nanogram quantities) can be detected in comparison with the milligram amounts needed for standard methods. Another advantage is that the complete system can be relatively small without sacrificing spectral resolution.

  7. FORMALDEHYDE GAS INACTIVATION OF BACILLUS ANTHRACIS, BACILLUS SUBTILIS AND GEOBACILLUS STEAROTHERMOPHILUS SPORES ON INDOOR SURFACE MATERIALS.

    Science.gov (United States)

    Research evaluated the decontamination of Bacillus anthracis, Bacillus subtilis, and Geobacillus stearothermophilus spores on indoor surface material using formaldehyde gas. Spores were dried on seven types of indoor surfaces and exposed to 1100 ppm formaldehyde gas for 10 hr. Fo...

  8. Screening of Bacillus Species with Potentials of Antibiotics Production

    Directory of Open Access Journals (Sweden)

    Faruk Adamu KUTA

    2009-07-01

    Full Text Available Sixteen soil samples were collected from different refuse dump sites in Minna, the capital Niger State, and analysed for the presence of Bacillus species. Physical-chemical analysis of the soil samples revealed the followings: PH value 6.89-8.47; moisture content 1.58 – 21.21% and temperature 27-28ºC. Using both pour plate and streak method of inoculation, total bacterial count in the soil samples ranged from 3.8×104 cfu/g 16.0×104 cfu/g. The identified Bacillus species included: Bacillus cereus (30.8%, Bacillus brevis (1.9% Bacillus polymyxa (3.8%, Bacillus lichenifomis (13.5%, Bacillus spherericus (7.7%, Bacillus mycoides (13.5%, Bacillus pumilus (7.7%, Bacillus subtilis (3.8%, Bacillus alvei (1.9%, Bacillus laterosporous (1.9%, Bacillus firmus (9.6% and Bacillus circulars (3.8%. Antibiotic production tests indicated that nine Bacillus species out of twelve isolated in this study could be used to produce antibiotics that had effect on the test organisms. However, Bacillus polymyxa, Bacillus sphaericus and Bacillus laterosporous had little or no effect on the tested organisms. This study suggests that some Bacillus species have potential to produce high quality antibiotics that can be use to control microbial growth in future.

  9. Identification of Bacillus strains isolated from Yacai by 16S rRNA gene sequencing%利用16S rRNA序列鉴定分离自芽菜中的芽孢杆菌

    Institute of Scientific and Technical Information of China (English)

    张良; 吴华昌; 邓静; 李萍萍; 肖辰; 沈芳

    2012-01-01

    从宜宾芽菜中分离优势菌群,选取4株芽孢杆菌,分别为B1、B2、B3、B4.对4株菌的16S rRNA基因经PCR扩增测序,将测序结果同该属内菌株的16S rRNA序列作多序列比较,并建立芽孢杆菌属的系统发育树.结合细菌形态学生理生化特性鉴定结果,结果表明菌株B1、B3为枯草芽孢杆菌,菌株B2为解淀粉芽孢杆菌,菌株B4为乙酰微小杆菌.%Four dominant Bacillus strains named Bl, B2, B3 and B4 were isolated from Yacai (a kind of Yibin pickles in China). The 16S rRNA genes of these strains were amplified in vitro and sequenced. Then a phylogenetic tree was constructed by multiple alignments of their sequences with other 16S rRNA gene sequences of Bacillus. According to 16S rRNA gene analysis combined with morphological, physiological and biochemical characteristics, B1 and B3 were identified as Bacillus subtilis, B2 was Bacillus amyloliquefaciens and B4 was Exiguobacterium acetylicum.

  10. beta-Amylase production by some Bacillus cereus, Bacillus megaterium and Bacillus polymyxa [correction of polymaxa] strains.

    Science.gov (United States)

    Niziołek, S

    1997-01-01

    The production of extracellular beta-amylase by some Bacillus cereus, Bacillus megaterium and Bacillus polymyxa [corrected] strains was investigated, and the maximal yields of the enzyme were 3.6; 9.3 and 20.4 U/mL of the culture fluid, respectively (U, 1 mumol of maltose equivalent per min at 30 degrees C). Several cultivation media were used for beta-amylase production. Bacillus cereus and some strains of Bacillus megaterium gave good yields of beta-amylase only in medium with the addition of nutrient broth. However, beta-amylase produced during growth in protein rich medium (nutrient broth) was highly unstable, probably due to inactivation by proteolytic enzymes co-existing in the culture fluid. Bacillus polymyxa [corrected] strains can produce good yields of beta-amylase on a semi-synthetic medium consisting of inorganic salts, potato starch and inexpensive soybean extract instead of costly peptone and meat extract. The most potential beta-amylase producer was the strain Bacillus polymyxa [corrected] NCIB 8524. The tested Bacillus megaterium and Bacillus polymyxa [corrected] strains were apparently differentiated by temperature cultivation (30 and 37 degrees C) suitable for beta-amylase amylase yield.

  11. Theoretical investigations on the N-polar GaN/AlxGa1-xN/GaN heterostructures: Considering the existence of both two-dimensional hole and electron gases

    Science.gov (United States)

    Yan, Junda; Wang, Quan; Wang, Xiaoliang; Feng, Chun; Xiao, Hongling; Liu, Shiming; Gong, Jiamin; Liu, Fengqi; Li, Baiquan

    2016-09-01

    In this paper, a theoretical study of N-polar GaN/AlxGa1-xN/GaN heterostructures is conducted systematically. The dependence of two-dimensional hole gas (2DHG, at the bottom AlxGa1-xN/GaN interface) and electron gas (2DEG, at the upper GaN/AlxGa1-xN interface) sheet densities on variables, such as GaN top layer thickness, AlxGa1-xN back barrier thickness, and Al content, is investigated. The effect of n-type doping in AlxGa1-xN and δ-doping concentrations in the GaN buffer on 2DHG and 2DEG sheet densities is also presented. For the unintentionally doped structure, the 2DHG-induced electric field E2DHG provides the only driving force in the 2DEG formation. Thus, in order to get high dense of 2DEG in such heterostructure, 2DEG and 2DHG shall coexist through proper AlxGa1-xN back barrier design. While for intentionally doped structure (with the n-type doped AlxGa1-xN back barrier layer or δ-doped GaN buffer layer), ionized donor-induced electric field Edonor is another driving force for 2DEG. The obtained insight offers indications for the structure design of the N-polar GaN/AlxGa1-xN/GaN high electron mobility transistors.

  12. Antimicrobials of Bacillus species: mining and engineering

    OpenAIRE

    Zhao, Xin

    2016-01-01

    Bacillus sp. have been successfully used to suppress various bacterial and fungal pathogens. Due to the wide availability of whole genome sequence data and the development of genome mining tools, novel antimicrobials are being discovered and updated,;not only bacteriocins, but also NRPs and PKs. A new classification system of known and putative antimicrobial compounds of Bacillus by genome mining is presented in Chapter 2. Importantly, predicting, isolating and screening of Bacillus strains w...

  13. Microarray-based Resequencing of Multiple Bacillus anthracis Isolates

    Science.gov (United States)

    2004-12-17

    al.: Iden- tification of anthrax toxin genes in a Bacillus cereus associ- ated with an illness resembling inhalation anthrax. Proc Natl Acad Sci USA...Norwegian Bacillus cereus and Bacillus thuringiensis soil isolates. Appl Environ Microbiol 2001, 67:4863-4873. 26. Radnedge L, Agron PG, Hill KK, Jackson PJ...Ticknor LO, Keim P, Andersen GL: Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis . Appl

  14. The sense and antisense expression of gibberellin 20-oxidase gene (rga5) in rice and its effects on GA1 level and agronomic traits

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    A gibberellin 20-oxidase gene rga5 was isolated by PCR from genomic DNA of rice (Oryza sativa ssp indica) cultivars 'Aizizhan' and 'Nante'. Compared with the reported OsGA20ox, the rga5 was partial-frame-shifted with 11 different amino acids. Then the rga5 with CaMV 35S promotor and NOS terminator was inserted into the polylinker site of pCambia1301 to construct sense and antisense gene expressing vectors pSrga5 and pArga5. The transgenic plants were obtained by biolistic bombardment with pSrga5 or pArga5. The transgenic rice plants showed that the over- expression and antisense-expression of rga5 have remarkable effects on the biological characters of rice. The sense transgenic plants showed heightening with longer spike, more seed-bearing and unaffected flowering, whereas antisense transgenic plants showed dwarfing, early-flowering with slender stem, dark leaf color, shorter leaf and shorter spike. The PCR amplification and Southern blot hybridization showed that the rga5 has been integrated into the transgenic rice genome and the transcription of rga5 was identified by Northern blot hybridization. In the sense transgenic plants the GA1 content increased of about 50%, however, the antisense transgenic rice decreased of 90% approximately compared with control plant 'Zhonghua 8'. These results demonstrated that the rga5 is a functional gene encoding gibberellin 20-oxidase in rice. Over-expressing rga5 significantly increases the endogenous GA1 level and plant height of rice, whereas the expression of antisense rga5 decreases the GA1 level and plant height of rice dramatically.

  15. Kinetics versus thermodynamics of the metal incorporation in molecular beam epitaxy of (InxGa1−x2O3

    Directory of Open Access Journals (Sweden)

    Patrick Vogt

    2016-08-01

    Full Text Available We present a detailed study of the reaction kinetics and thermodynamics of the plasma-assisted oxide molecular beam epitaxy of the ternary compound (InxGa1−x2O3 for 0 ≤ x ≤ 1. We measured the growth rate of the alloy in situ by laser reflectrometry as a function of growth temperature TG for different metal-to-oxygen flux ratios rMe, and nominal In concentrations xnom in the metal flux. We determined ex situ the In and Ga concentrations in the grown film by energy dispersive X-ray spectroscopy. The measured In concentration x shows a strong dependence on the growth parameters TG, rMe, and xnom whereas growth on different co-loaded substrates shows that in the macroscopic regime of ∼μm3 x does neither depend on the detailed layer crystallinity nor on crystal orientation. The data unveil that, in presence of In, Ga incorporation is kinetically limited by Ga2O desorption the same way as during Ga2O 3 growth. In contrast, In incorporation during ternary growth is thermodynamically suppressed by the presence of Ga due to stronger Ga–O bonds. Our experiments revealed that Ga adatoms decompose/etch the In–O bonds whereas In adatoms do not decompose/etch the Ga–O bonds. This result is supported by our thermochemical calculations. In addition we found that a low TG and/or excessively low rMe kinetically enables In incorporation into (InxGa1−x2O3. This study may help growing high-quality ternary compounds (InxGa1−x2O3 allowing band gap engineering over the range of 2.7–4.7 eV.

  16. Flowering in tobacco needs gibberellins but is not promoted by the levels of active GA1 and GA4 in the apical shoot.

    Science.gov (United States)

    Gallego-Giraldo, Lina; García-Martínez, José L; Moritz, Thomas; López-Díaz, Isabel

    2007-04-01

    Flowering of Nicotiana tabacum cv Xhanti depends on gibberellins because gibberellin-deficient plants, due to overexpression of a gibberellin 2-oxidase gene (35S:NoGA2ox3) or to treatment with the gibberellin biosynthesis inhibitor paclobutrazol, flowered later than wild type. These plants also showed inhibition of the expression of molecular markers related to floral transition (NtMADS-4 and NtMADS-11). To investigate further the role of gibberellin in flowering, we quantified its content in tobacco plants during development. We found a progressive reduction in the levels of GA1 and GA4 in the apical shoot during vegetative growth, reaching very low levels at floral transition and beyond. This excludes these two gibberellins as flowering-promoting factors in the apex. The evolution of active gibberellin content in apical shoots agrees with the expression patterns of gibberellin metabolism genes: two encoding gibberellin 20-oxidases (NtGA20ox1 = Ntc12, NtGA20ox2 = Ntc16), one encoding a gibberellin 3-oxidase (NtGA3ox1 = Nty) and one encoding a gibberellin 2-oxidase (NtGA2ox1), suggesting that active gibberellins are locally synthesized. In young apical leaves, GA1 and GA4 content and the expression of gibberellin metabolism genes were rather constant. Our results support that floral transition in tobacco, in contrast to that in Arabidopsis, is not regulated by the levels of GA1 and GA4 in apical shoots, although reaching a threshold in gibberellin levels may be necessary to allow meristem competence for flowering.

  17. Controllable GMR device in a δ-doped, magnetically and electrically modulated, GaAs /Alx Ga1-x As heterostructure

    Science.gov (United States)

    Shen, Li-Hua; Zhang, Gui-Lian; Yang, Duan-Chui

    2016-09-01

    We report on a theoretical study of giant magnetoresistance (GMR) effect in a δ-doped GaAs /Alx Ga1-x As heterostructure modulated by two stripes of ferromagnetic metal and a stripe of Schottky metal in parallel configuration. The δ-doping dependent transmission and conductance of the device are calculated. It is shown that a considerable giant magnetoresistance (GMR) effect exists in this structure. It is also shown that the magnetoresistance ratio (MR) can be switched by the δ-doping. The underlying physical mechanism of the results is analysed in light of δ-doping-dependent tunneling process in the device.

  18. Effects of Cry8Ga1 toxin on the activities of main enzymes in Holotrichia oblita larvae%Cry8Ga1蛋白对华北大黑鳃金龟幼虫主要酶活性的影响

    Institute of Scientific and Technical Information of China (English)

    谭树乾; 尹姣; 李克斌; 束长龙; 刘春琴; 曹雅忠; 仵均祥

    2013-01-01

    华北大黑鳃金龟[Holotrichia oblita (Faldermann)]是一种危害严重的地下害虫,Cry8Ga1蛋白对其幼虫具有明显杀虫活性.本文比较了华北大黑鳃金龟幼虫取食Cry8Ga1蛋白后6种酶活性的变化,发现取食高浓度(5×LC50,50.767 μg/g土)Cry8Ga1蛋白幼虫的总蛋白酶、类胰凝乳蛋白酶、乙酰胆碱酯酶(AChE)、谷胱甘肽-S-转移酶(GST)以及氨肽酶(APN)的活性较对照均有不同程度的升高,在大多数处理时段差异显著(P<0.05),其中高浓度处理组的GST酶活性在12 h后升高倍数最大,是同时段对照的23.37倍;而取食低浓度(0.5×LC50,5.076 7μg/g土)Cry8Ga1蛋白时,乙酰胆碱酯酶和氨肽酶活性无明显差异(P≥0.05).类胰蛋白酶在整个试验中活性变化与对照相比仅有个别处理时段存在差异,由此推断,类胰蛋白酶不是华北大黑鳃金龟幼虫对Cry8Ga1蛋白的主要活化酶.%Holotrichia oblita,an underground insect pest,causes serious damages on crops in China.It is well known that Cry8Ga1 has a larvicidal activity against H.oblita.In this study,the larvae of H.oblita was fed with two concentrations of Cry8Ga1.Subsequently,the activities of 6 enzymes were assayed.It was found that when only applied with higher concentration of Cry8Ga1 (5 × LC50,50.767 μg/g soil),the activities of total protease,chymotrypsin-like enzyme,acetylcholinesterase (AChE),glutathione-S-transferase (GST) and aminopeptidase (APN) in larvae would significantly rise in most time of the experiment (P<0.05).And the GST activity after 12 h in higher-concentration group was 23.37 times as much as the control,which was the largest multiple of the elevatory enzymes activities.However,the differences of the activities of ACHE and APN in larvae were insignificant between the lower concentration (0.5 × LC50,5.076 7 μg/g soil) group and control (P≥0.05).The activities of the trypsin-like enzyme showed difference occasionally.It is therefore deduced that the

  19. A selective chromogenic agar that distinguishes Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis.

    Science.gov (United States)

    Juergensmeyer, Margaret A; Gingras, Bruce A; Restaino, Lawrence; Frampton, Elon W

    2006-08-01

    A selective and differential plating medium, R & F anthracis chromogenic agar (ACA), has been developed for isolating and identifying presumptive colonies of Bacillus anthracis. ACA contains the chromogenic substrate 5-bromo-4-chloro-3-indoxyl-choline phosphate that upon hydrolysis yields teal (blue green) colonies indicating the presence of phosphatidylcholine-specific phospholipase C (PC-PLC) activity. Among seven Bacillus species tested on ACA, only members of the Bacillus cereus group (B. anthracis, B. cereus, and B. thuringiensis) produced teal colonies (PC-PLC positive) having cream rings. Examination of colony morphology in 18 pure culture strains of B. anthracis (15 ATCC strains plus AMES-1-RIID, ANR-1, and AMED-RIID), with one exception, required 48 h at 35 to 37 degrees C for significant color production, whereas only 24 h was required for B. cereus and B. thuringiensis. This differential rate of PC-PLC synthesis in B. anthracis (due to the truncated plcR gene and PlcR regulator in B. anthracis) allowed for the rapid differentiation on ACA of presumptive colonies of B. anthracis from B. cereus and B. thuringiensis in both pure and mixed cultures. Effective recovery of B. anthracis from a variety of matrices having both high (soil and sewage) and low microbial backgrounds (cloth, paper, and blood) spiked with B. anthracis ANR-1 spores suggests the probable utility of ACA plating for B. anthracis recovery in a diversity of applications.

  20. Efficient rainbow color luminescence from InxGa1-xN single quantum wells fabricated on {112¯2} microfacets

    Science.gov (United States)

    Nishizuka, K.; Funato, M.; Kawakami, Y.; Narukawa, Y.; Mukai, T.

    2005-12-01

    Rainbow color luminescence from InxGa1-xN single quantum wells (SQWs) is achieved and almost covers the entire visible range when the layers are fabricated on {112¯2} facets with a few micron-width using a regrowth technique on striped GaN templates. These facets are tilted 56° with respect to the (0001) facets and border the (0001) and {112¯0} facets. The emission wavelength on the {112¯2} facets is redshifted from the {112¯0} side to (0001) side due to the variations of the In composition, which leads to the color contrast with the rainbow geometry. The temperature dependence of the photoluminescence intensity shows that the internal quantum efficiency at room temperature is 33% due to the very small internal electric fields and a small threading dislocation density compared to that in conventional (0001) InxGa1-xN SQWs. Since the emission efficiency does not show a noticeable emission wavelength dependence, this type of structure has potential as light-emitting devices with multiwavelengths that perform numerous color controllability such as pastel and white colors.

  1. Determination of the surface band bending in InxGa1−xN films by hard x-ray photoemission spectroscopy

    Directory of Open Access Journals (Sweden)

    Mickael Lozac'h, Shigenori Ueda, Shitao Liu, Hideki Yoshikawa, Sang Liwen, Xinqiang Wang, Bo Shen, Kazuaki Sakoda, Keisuke Kobayashi and Masatomo Sumiya

    2013-01-01

    Full Text Available Core-level and valence band spectra of InxGa1−xN films were measured using hard x-ray photoemission spectroscopy (HX-PES. Fine structure, caused by the coupling of the localized Ga 3d and In 4d with N 2s states, was experimentally observed in the films. Because of the large detection depth of HX-PES (~20 nm, the spectra contain both surface and bulk information due to the surface band bending. The InxGa1−xN films (x = 0–0.21 exhibited upward surface band bending, and the valence band maximum was shifted to lower binding energy when the mole fraction of InN was increased. On the other hand, downward surface band bending was confirmed for an InN film with low carrier density despite its n-type conduction. Although the Fermi level (EF near the surface of the InN film was detected inside the conduction band as reported previously, it can be concluded that EF in the bulk of the film must be located in the band gap below the conduction band minimum.

  2. Peculiarities of strain relaxation in linearly graded InxGa1-xAs/GaAs(001) metamorphic buffer layers grown by molecular beam epitaxy

    Science.gov (United States)

    Sorokin, S. V.; Klimko, G. V.; Sedova, I. V.; Sitnikova, A. A.; Kirilenko, D. A.; Baidakova, M. V.; Yagovkina, M. A.; Komissarova, T. A.; Belyaev, K. G.; Ivanov, S. V.

    2016-12-01

    This paper presents a comprehensive study of structural, optical and electrical properties of heterostructures with linearly graded InxGa1-xAs metamorphic buffer layers (MBLs) grown by molecular beam epitaxy on GaAs (001) substrates. The low density of threading dislocations (well below 106 cm-2) in 1-μm-thick In0.3Ga0.7As layers grown atop of the linearly graded InxGa1-xAs/GaAs MBLs has been confirmed by using transmission electron microscopy (TEM). X-ray diffraction (XRD) data demonstrate good agreement between the experimentally measured In step-back and its calculations in the frames of existing models. Combining the XRD reciprocal space maps (RSM) of the structures and the spatially-resolved selective area electron diffraction measurements by cross-sectional TEM in depth-profiled RSM diagrams allowed direct visualization of the strain relaxation dynamics during the MBL growth. Strong effect of the azimuth angle and the value of an unintentional initial miscut of nominally (001) oriented GaAs substrate on the strain relaxation dynamics was observed.

  3. Epitaxial growth and magnetic properties of ultraviolet transparent Ga2O3/(Ga1-xFex)2O3 multilayer thin films

    Science.gov (United States)

    Guo, Daoyou; An, Yuehua; Cui, Wei; Zhi, Yusong; Zhao, Xiaolong; Lei, Ming; Li, Linghong; Li, Peigang; Wu, Zhenping; Tang, Weihua

    2016-04-01

    Multilayer thin films based on the ferromagnetic and ultraviolet transparent semiconductors may be interesting because their magnetic/electronic/photonic properties can be manipulated by the high energy photons. Herein, the Ga2O3/(Ga1-xFex)2O3 multilayer epitaxial thin films were obtained by alternating depositing of wide band gap Ga2O3 layer and Fe ultrathin layer due to inter diffusion between two layers at high temperature using the laser molecular beam epitaxy technique. The multilayer films exhibits a preferred growth orientation of crystal plane, and the crystal lattice expands as Fe replaces Ga site. Fe ions with a mixed valence of Fe2+ and Fe3+ are stratified distributed in the film and exhibit obvious agglomerated areas. The multilayer films only show a sharp absorption edge at about 250 nm, indicating a high transparency for ultraviolet light. What’s more, the Ga2O3/(Ga1-xFex)2O3 multilayer epitaxial thin films also exhibits room temperature ferromagnetism deriving from the Fe doping Ga2O3.

  4. Modified atomic scattering amplitudes and size effects on the 002 and 220 electron structure factors of multiple Ga1-xInxAs/GaAs quantum wells

    Science.gov (United States)

    Titantah, J. T.; Lamoen, D.; Schowalter, M.; Rosenauer, A.

    2009-04-01

    The modified atomic scattering amplitudes (MASAs) of mixed Ga1-xInxAs, GaAs1-xNx, and InAs1-xNx are calculated using the density functional theory approach and the results are compared with those of the binary counterparts. The MASAs of N, Ga, As, and In for various scattering vectors in various chemical environments and in the zinc-blende structure are compared with the frequently used Doyle and Turner values. Deviation from the Doyle and Turner results is found for small scattering vectors (s MASAs are found to be sensitive to the orientation of the scattering vector and on the chemical environment. The chemical environment sensitive MASAs are used within zero pressure classical Metropolis Monte Carlo, finite temperature calculations to investigate the effect of well size on the electron 002 and 220 structure factors (SFs). The implications of the use of the 002 (200) spot for the quantification of nanostructured Ga1-xInxAs systems are examined while the 220 SF across the well is evaluated and is found to be very sensitive to the in-plane static displacements.

  5. Pacemaker-associated Bacillus cereus endocarditis.

    Science.gov (United States)

    Barraud, Olivier; Hidri, Nadia; Ly, Kim; Pichon, Nicolas; Manea, Petrus; Ploy, Marie-Cécile; Garnier, Fabien

    2012-11-01

    We report the case of a pacemaker-associated Bacillus cereus endocarditis in a nonimmunocompromised patient. Antibiotic treatment was ineffective, and the pacemaker had to be removed. B. cereus was cultured from several blood samples and from the pacemaker electrodes. This case underlines the contribution of the rpoB gene for Bacillus species determination.

  6. Antagonistic Activities of Bacillus spp. Strains Isolated from Tidal Flat Sediment Towards Anthracnose Pathogens Colletotrichum acutatum and C. gloeosporioides in South Korea

    Directory of Open Access Journals (Sweden)

    Joon-Hee Han

    2015-06-01

    Full Text Available Anthracnose is a fungal disease caused by Colletotrichum species that is detrimental to numerous plant species. Anthracnose control with fungicides has both human health and environmental safety implications. Despite increasing public concerns, fungicide use will continue in the absence of viable alternatives. There have been relatively less efforts to search antagonistic bacteria from mudflats harboring microbial diversity. A total of 420 bacterial strains were isolated from mudflats near the western sea of South Korea. Five bacterial strains, LB01, LB14, HM03, HM17, and LB15, were characterized as having antifungal properties in the presence of C. acutatum and C. gloeosporioides. The three Bacillus atrophaeus strains, LB14, HM03, and HM17, produced large quantities of chitinase and protease enzymes, whereas the B. amyloliquefaciens strain LB01 produced protease and cellulase enzymes. Two important antagonistic traits, siderophore production and solubilization of insoluble phosphate, were observed in the three B. atrophaeus strains. Analyses of disease suppression revealed that LB14 was most effective for suppressing the incidence of anthracnose symptoms on pepper fruits. LB14 produced antagonistic compounds and suppressed conidial germination of C. acutatum and C. gloeosporioides. The results from the present study will provide a basis for developing a reliable alternative to fungicides for anthracnose control.

  7. 鲟源病原性嗜水气单胞菌拮抗芽孢杆菌的鉴定及其生物学特性%Identification and biological characteristics of a Bacillus strain antagonistic against pathogenic Aeromonas hydrophila of sturgeons

    Institute of Scientific and Technical Information of China (English)

    曹海鹏; 何珊; 刘丽玲; 吕利群

    2011-01-01

    从养殖池污泥中分离筛选了1株优良的鲟源嗜水气单胞茵拮抗芽孢杆菌G1,其对鲟源嗜水气单胞茵S1产生的抑茵圈直径为18.50 mm.通过API50CH细菌鉴定系统以及16S rRNA序列分析法,菌株G1被鉴定为解淀粉芽孢杆菌(Bacillus amyloliquefaciens),GenBank登录号HM245965.1,其16S rRNA序列与基因库中芽孢杆菌属菌株的16S rRNA序列有99%- 100%的同源性,而且与解淀粉芽孢杆菌Ba-74501 (GenBank登录号:DQ422953.1)的亲缘关系最近.菌株G1的最适生长pH值为7,最适生长温度为30℃,其在30℃、200 r/min条件下的生长曲线为:0-6h为生长延迟期,6-54 h为对数生长期,54-90 h为稳定期,90 h以后为衰亡期.此外,菌株G1对其他实验选用的病原性嗜水气单胞菌也表现出良好的拮抗活性.本实验结果有利于填补嗜水气单胞茵拮抗菌在分类地位、生物学特性等方面的不足,为鲟鱼嗜水气单胞菌病的生物防控提供科学资料.%A good Bacillus strain Gl antagonistic against pathogenic Aeromonas hydrophila of sturgeons was isolated and screened from the sediment of aquaculture ponds, which produced the inhibitionzone of 18.50 ram in diameter against^, hydrophila strain SI. Strain Gl (GenBank accession number: HM245965.1) was identified as Bacillus amyloliquefaciens through APICH50 bacterial identification system and 16S rRNA sequence analysis. Its ]6S rRNA sequence had homology of 99%-100% with those of Bacillus sp. Strains submitted to GenBank, and showed the most close relative to Bacillus amyloliquefaciens strain Ba-74501 (GenBank accession number: DQ422953.1). The best growth pH and temperature of strain Gl were 7 and 30 DC, its growth curve in the condition of 30 °C and 200 r/min was as follows: the lag phase was 0-6 h, the log phase was 6-54 h, the stationary phase was 54-90 h, the decline phase was after 90 h. In addition, strain Gl also exhibited good antagonistic activity against other tested A. Hydrophila strains

  8. Photoluminescence Investigation of Two-Dimensional Electron Gas in an Undoped AlxGa1-xN/GaN Heterostructure

    Institute of Scientific and Technical Information of China (English)

    HAN Xiu-Xun; WU Jie-Jun; LI Jie-Min; CONG Guang-Wei; LIU Xiang-Lin; ZHU Qin-Sheng; WANG Zhan-Guo

    2005-01-01

    @@ Low-temperature photoluminescence measurement is performed on an undoped Alx Ga1-xN/GaN heterostructure. Temperature-dependent Hall mobility confirms the formation of two-dimensional electron gas (2DEG) near the heterointerface. A weak photoluminescence (PL) peak with the energy of ~79meV lower than the free exciton (FE) emission of bulk GaN is related to the radiative recombination between electrons confined in the triangular well and the holes near the flat-band region of GaN. Its identification is supported by the solution of coupled one-dimensional Poisson and Schrodinger equations. When the temperature increases, the red shift of the 2DEG related emission peak is slower than that of the FE peak. The enhanced screening effect coming from the increasing 2DEG concentration and the varying electron distribution at two lowest subbands as a function of temperature account for such behaviour.

  9. X-ray reflectivity and atomic force microscopy studies of MOCVD grown AlxGa1-xN/GaN superlattice structures*

    Institute of Scientific and Technical Information of China (English)

    Wang Yuanzhang; Li Jinchai; Li Shuping; Chen Hangyang; Liu Dayi; Kang Junyong

    2011-01-01

    The grazing incidence X-ray reflectivity (GIXR) technique and atomic force microscopy (AFM) were exploited to obtain an accurate evaluation of the surfaces and interfaces for metalorganic chemical vapor deposition grown AlxGa1-xN/GaN superlattice structures. The X-ray diffraction results have been combined with reflectivity data to evaluate the layer thickness and Al mole fraction in the AlGaN layer. The presence ora smooth interface is responsible for the observation of intensity oscillation in GIXR, which is well correlated to step flow observation in AFM images of the surface. The structure with a low Al mole fraction (x = 0.25) and thin well width has a rather smooth surface for the Rrms of AFM data value is 0.45 nm.

  10. Properties of Excitons Bound to Neutral Donors in GaAs-AlxGa1-xAs Quantum-Well Wires

    Institute of Scientific and Technical Information of China (English)

    DI Bing; LIU Jian-Jun

    2006-01-01

    In the effective-mass approximation, using a simple two-parameter wave function and a one-dimensional(1D) equivalent potential model, we calculate variationally the binding energy of an exciton bound to a neutral donor(D0,X) in finite GaAs-AlxGa1-xAs quantum well wires (QWWs). At the wire width of 25 A, the binding energy has a peak value, which is also at the position of the peak of the exciton binding energy, and the center-of-mass wave functions of excitons reaches the most centralized distribution. In addition, the changing tendency of the average interparticle distance as the wire width is reverse to that of the binding energy.

  11. The Structural Quality of AlxGa1-xN Epitaxial Layers Grown by Digitally-AlloyedModulated Precursor Epitaxy Determined by Transmission Electron Microscopy

    Energy Technology Data Exchange (ETDEWEB)

    Hawkridge, Michael E; Liliental-Weber, Zuzanna; Kim, Hee Jin; Choi, Suk; Yoo, Dongwon; Ryou, Jae-Hyun; Dupuis, Russell

    2008-10-13

    Al(x)Ga(1-x)N layers of varying composition (0.5

  12. Donor Binding Energy in GaAs/Ga1-x AlxAs Quantum Well: the Laser Field and Temperature Effects

    Institute of Scientific and Technical Information of China (English)

    WEI Shu-Yi; HOU Wen-Xiu; CHEN Xiao-Yang; XIA Cong-Xin

    2013-01-01

    Based on the effective-mass approximation theory and variational method,the laser field and temperature effects on the ground-state donor binding energy in the GaAs/Ga1-xAlxAs quantum well (QW) are investigated.Numerical results show that the donor binding energy depends on the impurity position,laser parameter,temperature,Al composition,and well width.The donor binding energy is decreased when the laser field and temperature are increased in the QW for any impurity position and QW parameter case.Moreover,the laser field has an obvious influence on the donor binding energy of impurity located at the vicinity of the QW center.In addition,our results also show that the donor binding energy decreases (or increases) as the well width (or Al composition x) increases in the QW.

  13. Influence of Width of left Well on Intersubband Transitions in AlxGa1-x N/GaN Double Quantum Wells

    Institute of Scientific and Technical Information of China (English)

    LEI Shuang-Ying; SHEN Bo; ZHANG Guo-Yi

    2008-01-01

    Influence of width of lett well in Alx Ga1-x N/GaN double quantum wells (DQWs) on absorption coefficients and wavelengths of the intersubband transitions (ISBTs) is investigated by solving the SchrSdinger and Poisson equations self-consistently. When the width of lett well is 1.79nm, three-energy-level DQ, Ws are realized. The ISBT between the first odd and second odd order subbands (the lodd-2odd ISBT) has a comparable absorption coeffcient with the 1odd-2even ISBT. Their wavelengths are located at 1.3 and 1.55μm, respectively. When the width of lett well is 1.48nm, a four-energy-level DQWs is realized. The calculated results have a possible application to ultrafast two-colour optoeleetronic devices operating within the optical communication wavelength range.

  14. Energy Level Engineering in In_x Ga_(1-x) As/GaAs Quantum Dots Applicable to QD-Lasers by Changing the Stoichiometric Percentage

    CERN Document Server

    Borji, Mahdi Ahmadi

    2015-01-01

    Band edge and energy levels of truncated pyramidal In_x Ga_(1-x) As/GaAs (001) quantum dots are studied by single-band effective mass approach, and the dependence to stoichiometric percentages is investigated. It is shown that enhancement of indium percentage decreases the band gap and the recombination energy of electrons and holes. Our principal result is that decrease of recombination energy and band gap is nonlinear and the slopes are different band gap and e-h recombination energy. In addition, it is proved that strain tensor is diagonal along z-axis and the absolute value of the components gets larger by more indium inclusion. Our results appear to be in very good consonance with similar studies. Keywords: quantum dot, band structure, strain tensor, indium percentage.

  15. One-phonon resonant electron Raman scattering in multilayer coaxial cylindrical AlxGa1-xAs/GaAs quantum cables

    Institute of Scientific and Technical Information of China (English)

    Zhong Qinghu; Yi Xuehua; Pu Shouliang; Yan Yuzhen

    2013-01-01

    We have presented a theoretical calculation of the differential cross section (DCS) for the electron Raman scattering (ERS) process associated with the interface optical (IO) and surface optical (SO) phonons in multilayer coaxial cylindrical AlxGa1-xAs/GaAs quantum cables (QC).We consider the Fr(o)hlich electron-phonon interaction in the framework of the dielectric continuum approach.The selection rules for the processes are studied.Singularities are found to be sensitively size-dependent and by varying the size of the QC,it is possible to control the frequency shift in the Raman spectra.A discussion of the phonon behavior for the QC with different size is presented.The numerical results are also compared with those of experiments.

  16. Electron mobility limited by surface and interface roughness scattering in AlxGa1-xN/GaN quantum wells

    Institute of Scientific and Technical Information of China (English)

    Wang Jian-Xia; Yang Shao-Yan; Wang Jun; Liu Gui-Peng; Li Zhi-Wei; Li Hui-Jie; Jin Dong-Dong

    2013-01-01

    The electron mobility limited by the interface and surface roughness scatterings of the two-dimensional electron gas in AlxGa1-xN/GaN quantum wells is studied.The newly proposed surface roughness scattering in the AlGaN/GaN quantum wells becomes effective when an electric field exists in the AlxGal-xN barrier.For the AlGaN/GaN potential well,the ground subband energy is governed by the spontaneous and the piezoelectric polarization fields which are determined by the barrier and the well thicknesses.The thickness fluctuation of the AlGaN barrier and the GaN well due to the roughnesses cause the local fluctuation of the ground subband energy,which will reduce the 2DEG mobility.

  17. Competitive In and Ga incorporations for InxGa1-xN (0.29

    Directory of Open Access Journals (Sweden)

    S. M. Hamad

    2013-07-01

    Full Text Available The kinetics of In and Ga incorporation into wurtzite InxGa1−xN nanorods, grown by plasma-assisted MBE under N-rich conditions at a moderate temperature, has been systematically investigated with Ga-flux set as a growth parameter at three distinct values while varying In-flux. The interplay of Ga and In fluxes in their contributions to the incorporation was found to disagree with the empirical Böttcher's formula, of which the reliability is based on the assumption of preeminent Ga incorporation. The competition between Ga and In for incorporations involves, we believe, the displacement of In from the weaker In-N bonds by Ga to form the Ga-N bonds at high In and Ga fluxes.

  18. Phonon-Assisted Modulation of the Electron Collection Efficiency into InxGa1-xAs/GaAs Quantum Wells

    DEFF Research Database (Denmark)

    Borri, Paola; Gurioli, M.; Colocci, M.;

    1997-01-01

    The energy relaxation and the capture of free carriers in InxGa1-xAs/GaAs quantum wells have been investigated by means of continuous-wave and time-resolved photoluminescence for excitation energies tuned over a wide interval above the GaAs band-gap. The strong interaction between free electrons...... and longitudinal-optical phonons gives rise to a 42 meV-period modulation of the efficiency of carrier collection into the well and of the corresponding collection time. The energy position of the electronic level driving the capture into the well has been deduced from the data and does not coincide with any...... calculated energy level of the well structure. The capture time turns out to be at the limit of our time resolution (approximate to 20 ps), while the collection time oscillates with an amplitude of about 80 ps, because of the emission of acoustic phonons....

  19. Crystal structure and magnetism of the MnxGa (1.15 ≤x ≤ 2.0 rare-earth-free permanent magnet system

    Directory of Open Access Journals (Sweden)

    Rasa Rejali

    2016-05-01

    Full Text Available Room temperature neutron powder diffraction has been used to investigate the chemical structure and magnetic ordering of a series of tetragonal (I4/mmm #139 MnxGa (1.15 ≤ x ≤ 2.0 alloys. Initially (x 1.5 Mn also appears on the 2a site. The manganese atoms on the 4d site carry an almost constant moment of 2.16(6 μB/Mn. The loss of magnetisation seen with increasing Mn content is shown to be the result of large (∼3 μB/Mn, antiparallel Mn moments on the 2b, and later 2a sites, and not to a reduction of the Mn moment on the 4d sites.

  20. Multi-shell spherical GaAs /AlxGa1-x As quantum dot shells-size distribution as a mechanism to generate intermediate band energy levels

    Science.gov (United States)

    Rodríguez-Magdaleno, K. A.; Pérez-Álvarez, R.; Martínez-Orozco, J. C.; Pernas-Salomón, R.

    2017-04-01

    In this work the generation of an intermediate band of energy levels from multi-shell spherical GaAs /AlxGa1-x As quantum dot shells-size distribution is reported. Within the effective mass approximation the electronic structure of a GaAs spherical quantum-dot surrounded by one, two and three shells is studied in detail using a numerically stable transfer matrix method. We found that a shells-size distribution characterized by continuously wider GaAs domains is a suitable mechanism to generate the intermediate band whose width is also dependent on the Aluminium concentration x. Our results suggest that this effective mechanism can be used for the design of wider intermediate band than reported in other quantum systems with possible solar cells enhanced performance.

  1. Hydrogenic-Donor Impurity States in GaAs/A1sGa1-xAs Quantum Dots in the Presence of an Electric Field

    Institute of Scientific and Technical Information of China (English)

    PAN Jiang-Hong; LIU Li-Zhe; LIU Min

    2011-01-01

    @@ We report a calculation of binding energy of the ground state of a hydrogenic donor in a quantum cylindrical GaAs dot surrounded by Ga1-xA1-xAs with finite confinement potentials, in the presence of a uniform electric field applied parallel to the dot axis.The binding energy increases inchmeal as the radius of the dot decreases until a maximum value for a certain value of the quantum dot radii, then begins to drop quickly.Results for the binding energies and electronic wave function density of the hydrogenic-donor as functions of the impurity position, dot thickness and applied electric field are also presented.

  2. All-nitride AlxGa1‑xN:Mn/GaN distributed Bragg reflectors for the near-infrared

    Science.gov (United States)

    Capuzzo, Giulia; Kysylychyn, Dmytro; Adhikari, Rajdeep; Li, Tian; Faina, Bogdan; Tarazaga Martín-Luengo, Aitana; Bonanni, Alberta

    2017-02-01

    Since the technological breakthrough prompted by the inception of light emitting diodes based on III-nitrides, these material systems have emerged as strategic semiconductors not only for the lighting of the future, but also for the new generation of high-power electronic and spintronic devices. While III-nitride optoelectronics in the visible and ultraviolet spectral range is widely established, all-nitride efficient devices in the near-infrared (NIR) are still wanted. Here, through a comprehensive protocol of design, modeling, epitaxial growth and in-depth characterization, we develop AlxGa1‑xN:Mn/GaN NIR distributed Bragg reflectors and we show their efficiency in combination with GaN:(Mn,Mg) layers containing Mn-Mgk complexes optically active in the near-infrared range of wavelengths.

  3. Correlation of electronic structure and magnetic moment in Ga1-xMnxN : First-principles, mean field and high temperature series expansions calculations

    Science.gov (United States)

    Masrour, R.; Hlil, E. K.

    2016-08-01

    Self-consistent ab initio calculations based on density-functional theory and using both full potential linearized augmented plane wave and Korring-Kohn-Rostoker-coherent potential approximation methods, are performed to investigate both electronic and magnetic properties of the Ga1-xMnxN system. Magnetic moments considered to lie along (001) axes are computed. Obtained data from ab initio calculations are used as input for the high temperature series expansions (HTSEs) calculations to compute other magnetic parameters such as the magnetic phase diagram and the critical exponent. The increasing of the dilution x in this system has allowed to verify a series of HTSEs predictions on the possibility of ferromagnetism in dilute magnetic insulators and to demonstrate that the interaction changes from antiferromagnetic to ferromagnetic passing through the spins glace phase.

  4. Very high carbon delta -doping concentration in AlxGa1 - xAs grown by metalorganic vapor phase epitaxy using trimethylaluminum as a doping precursor

    Science.gov (United States)

    Li, G.; Petravić, M.; Jagadish, C.

    1996-04-01

    Using trimethylaluminum (TMAl) or trimethylgallium (TMGa) as a doping precursor, carbon δ-doped AlxGa1-xAs has been grown in metalorganic vapor phase epitaxy. Compared to TMGa, TMAl exhibits very high carbon δ-doping efficiency. The best hole profile of carbon δ-doped Al0.3Ga0.7As grown at 580 °C using TMAl as a doping precursor has a peak hole density of 1.6×1019 cm-3 for a full width at half-maximum of 85 Å with most of the incorporated carbon atoms being electrically active. When TMGa is used as the doping precursor, the hole density of carbon δ-doped AlxGa1-xAs significantly increases with an increase of the Al mole fraction. By comparison, the use of TMAl almost induces independence of the hole density on the Al mole fraction. The hole density of carbon δ-doped Al0.3Ga0.7As weakly increases when reducing the δ-doping temperature regardless of the doping precursors. The hole density of carbon δ-doped Al0.3Ga0.7As grown at 580 °C is proportionally associated with the moles of TMGa or TMAl totally input during a δ-doping step. Using heavily carbon δ-doped layers in Al0.3Ga0.7As, a carbon δ-doped pipi doping superlattice possessing a bulk-doped-like hole profile with an average hole density of 1.1×1019 cm-3 is therefore demonstrated as an alternative with unique advantages over other conventional carbon bulk-doping approaches.

  5. CdS-Free p-Type Cu2ZnSnSe4/Sputtered n-Type In x Ga1- x N Thin Film Solar Cells

    Science.gov (United States)

    Chen, Wei-Liang; Kuo, Dong-Hau; Tuan, Thi Tran Anh

    2017-03-01

    Cu2ZnSnSe4 (CZTSe) films for solar cell devices were fabricated by sputtering with a Cu-Zn-Sn metal target, followed by two-step post-selenization at 500-600°C for 1 h in the presence of single or double compensation discs to supply Se vapor. After that, two kinds of n-type III-nitride bilayers were prepared by radio frequency sputtering for CdS-free CZTSe thin film solar cell devices: In0.15Ga0.85N/GaN/CZTSe and In0.15Ga0.85N/In0.3Ga0.7N/CZTSe. The p-type CZTSe and the n-type In x Ga1- x N films were characterized. The properties of CZTSe changed with the selenization temperature and the In x Ga1- x N with its indium content. With the CdS-free modeling for a solar cell structure, the In0.15Ga0.85N/In0.3Ga0.7N/CZTSe solar cell device had an improved efficiency of 4.2%, as compared with 1.1% for the conventional design with the n-type conventional ZnO/CdS bilayer. Current density of ˜48 mA/cm2, the maximum open-circuit voltage of 0.34 V, and fill factor of 27.1% are reported. The 3.8-fold increase in conversion efficiency for the CZTSe thin film solar cell devices by replacing n-type ZnO/CdS with the III-nitride bilayer proves that sputtered III-nitride films have their merits.

  6. Avalanche multiplication noise in bulk and thin AI(x)Ga(1-x)As (x=0-0.8) PIN and NIP diodes

    Science.gov (United States)

    Ng, Beng K.; David, John P. R.; Tan, Chee H.; Plimmer, S. A.; Rees, Graham J.; Tozer, Richard C.; Hopkinson, Mark

    2001-06-01

    The avalanche multiplication noise characteristics of AlxGa1-xAs (x equals 0-0.8) have been measured in a wide range of PIN and NIP diodes. The study includes determining the effect of the alloy fraction, x, as it varies from 0 to 0.8 while the effect of the avalanche width, w, is investigated by varying it from 1 micrometers down to 0.05 micrometers . For x equals 0-0.6, the ratio of the electron to hole ionization coefficients, 1/k, decreases from 3 (for x equals 0) to 1 (for x equals 0.6), leading to higher noise in a local prediction as x increases. Measurements for x equals 0-0.6 in nominally 1um thick diodes indicates that the excess noise factor can be approximately predicted by the local model. However, as the avalanche width reduces, a lower than expected noise factor was measured. This behaviour is associated with the effect of deadspace, whereby carriers have insufficient energy to initiate ionization for a significant region of the device. The presence of deadspace leads to a more deterministic process, which acts to reduce excess noise. For x equals 0.8 however, its 1/k value is surprisingly high in a bulk structure, leading to noise performance that is primarily determined by the 1/k value and is comparable to that of silicon. Similar to the results of thin AlxGa1-xAs (x equals 0-0.6) diodes, thinner Al0.8Ga0.2As structures exhibit excess noise factor that is significantly reduced by the nonlocal deadspace effects.

  7. Bacillus cereus endocarditis in native aortic valve.

    Science.gov (United States)

    Ngow, H A; Wan Khairina, W M N

    2013-02-01

    Bacillus cereus endocarditis is rare. It has been implicated in immunocompromised individuals, especially in intravenous drug users as well as in those with a cardiac prosthesis. The patient was a 31-year-old ex-intravenous drug addict with a past history of staphylococcal pulmonary valve endocarditis, who presented with symptoms of decompensated cardiac failure. Echocardiography showed severe aortic regurgitation with an oscillating vegetation seen on the right coronary cusp of the aortic valve. The blood cultures grew Bacillus cereus. We report this as a rare case of Bacillus cereus endocarditis affecting a native aortic valve.

  8. 一株产脂肽类抗生素bacillopeptin A深海芽孢杆菌的筛选与鉴定%Screening and identification of a deep-sea derived Bacillus sp.producing lipopeptide bacillopeptin A

    Institute of Scientific and Technical Information of China (English)

    牛力轩; 王楠; 王雪梅; 胡江春; 王书锦

    2011-01-01

    Objective An anti-phytopathogenic bacterium was isolated from a deep sea-derived sediment collected from the South China Sea. The present study described the identification of the strain and active Hpopeptide metabolites it produced. Methods Acid precipitation, flash chromatography, SPE and semi-preparative HPLC were applied to isolate the pure lipopeptide from fermentation broth. Identification of the strain was based on combined using of the morphological, physiological, biochemical and 16S rDNA gene sequence analysis. Results A pure lipopeptide was isolated and identified as bacillopeptin A with a molecular weight of 1020.6Da. The strain was identified as Bacillus amyloliquefaciens SH-B74. Conclusion This strain has a wide antimicrobial spectrum to the phytopathogenic fungi, such as Rhizoctonia solani. The lipopeptide metabolite bacillopeptin A showed a good antagonistic effect against Botryosphaeria ribis. The results suggested that this strain and its metabolites may have the potential for further research and development values in biological control of plant fungal pathogens and soil bioremediation.%目的 筛选从中国南海深海3601m的海泥样品中分离得到的细菌,获得一株芽孢杆菌SH-B74,分离其产生抗植物病原真菌脂肽类化合物,并进行菌种鉴定.方法 使用酸沉淀、快速柱色谱、SPE和半制备反高效液相色谱技术分离发酵液中的脂肽类纯化合物,采用形态、生理生化特性和16S rDNA基因序列分析相结合方法鉴定菌株.结果 分离纯化得到一种拮抗植物病原真菌的脂肽类纯化合物bacillopeptin A,分子量为1020.6Da;菌株经鉴定为解淀粉芽孢杆菌(Bacillus amyloliquefaciens).结论 该菌株对玉米纹枯病等多种植物病原真菌具有拮抗作用,代谢产物bacillopeptin A对苹果干腐病菌具有良好的拮抗效果.显示了该菌及其代谢产物在植物病原真菌的生物防治和土壤生物修复方面具有潜在研发价值.

  9. Microbial Transformation of Quercetin by Bacillus cereus

    OpenAIRE

    Rao, Koppaka V.; Weisner, Nghe T.

    1981-01-01

    Biotransformation of quercetin was examined with a number of bacterial cultures. In the presence of a bacterial culture (Bacillus cereus), quercetin was transformed into two crystalline products, identified as protocatechuic acid and quercetin-3-glucoside (isoquercitrin).

  10. 75 FR 862 - Bacillus subtilis; Registration Review Proposed Decision; Notice of Availability

    Science.gov (United States)

    2010-01-06

    ... AGENCY Bacillus subtilis; Registration Review Proposed Decision; Notice of Availability AGENCY... proposed registration review decision for the pesticide Bacillus subtilis (case 6012) and opens a public... EPA's proposed registration review decision Bacillus subtilis (case 6012). The Bacillus subtilis...

  11. Bacillus cereus Bacteremia in a Preterm Neonate

    OpenAIRE

    Hilliard, Nicholaus J.; Schelonka, Robert L.; Waites, Ken B.

    2003-01-01

    Bacillus cereus is an uncommon but potentially serious bacterial pathogen causing infections of the bloodstream, lungs, and central nervous system of preterm neonates. A case of bacteremia caused by B. cereus in a 19-day-old preterm neonate who was successfully treated with vancomycin, tobramycin, meropenem, and clindamycin is described. Implications for the diagnostic laboratory and clinicians when Bacillus species are detected in normally sterile sites are discussed, and the small numbers o...

  12. Narrow terahertz attenuation signatures in Bacillus thuringiensis.

    Science.gov (United States)

    Zhang, Weidong; Brown, Elliott R; Viveros, Leamon; Burris, Kellie P; Stewart, C Neal

    2014-10-01

    Terahertz absorption signatures from culture-cultivated Bacillus thuringiensis were measured with a THz photomixing spectrometer operating from 400 to 1200 GHz. We observe two distinct signatures centered at ∼955 and 1015 GHz, and attribute them to the optically coupled particle vibrational resonance (surface phonon-polariton) of Bacillus spores. This demonstrates the potential of the THz attenuation signatures as "fingerprints" for label-free biomolecular detection.

  13. Identification of the pathogen isolated from root rot of Taxus chinensis var.mairer and screening of its antagonistic Bacillus%南方红豆杉根腐病病原及其拮抗芽胞杆菌的鉴定

    Institute of Scientific and Technical Information of China (English)

    谯天敏; 罗蓉; 朱天辉

    2015-01-01

    In this study,the pathogen isolated from root rot of Taxus chinensis var.mairer was first indentified. Based on morphological characteristics,pathogenicity and rDNA ITS sequence analysis,the results showed that the pathogen of root-rot disease of T .chinensis var.mairer was Fusarium oxysporum .The tablet confrontation training method was adopted to screen the antagonistic Bacillus species from the healthy plant rhizosphere,and three strains with obvious antagonistic effect were obtained,namely YB6,YB1 5 and YB37.Through morphologi-cal,physiological,biochemical and 1 6S rDNA homology analysis as well as the construction of 1 6S rDNA phy-logenetic tree,we found that YB6,YB15 and YB37 were Bacillus cereus ,B .amyloliquefaciens and Paenibacillus poly-myxa ,respectively.The antagonistic effect of P .polymyxa was the best with further research and development potential. This study provides some valuable information for effective prevention and treatment of this disease.%经形态学特征观察、致病性测定及 rDNA-ITS 序列分析,首次确定红豆杉根腐病病原为尖孢镰刀菌(Fusari-um oxysporum )。采用平板对峙培养法从健康植株根际土壤中筛选得到3株对尖孢镰刀菌具有明显拮抗作用的芽胞杆菌 YB6、YB15、YB37。经形态学、生理生化及16S rDNA 同源性分析,并通过构建16S rDNA 系统发育树,将YB6、YB15和 YB37分别鉴定为蜡样芽胞杆菌(Bacillus cereus )、解淀粉芽胞杆菌(B .amyloliquefaciens )和多黏类芽胞杆菌(Paenibacillu polymyxa ),其中多黏类芽胞杆菌拮抗效果最好,具有进一步研究开发的潜力。本研究通过对南方红豆杉根腐病病原鉴定及其拮抗芽胞杆菌的筛选,对该病的防治提供了理论依据。

  14. The Preparation and Characteristics of InxGa1-xN (0.06 ≤ x ≤ 0.58) Films Deposited by ECR-PEMOCVD

    Institute of Scientific and Technical Information of China (English)

    LIU Xing-Long; JIANG Xin; QIN Fu-Wen; BIAN Ji-Ming; ZHANG Dong; CHEN Wei-Ji; ZHOU Zhi-Feng; ZHI An-Bo; YU Bo; WU Ai-Min

    2011-01-01

    We investigate the structural property and surface morphology of Inx Ga1-xN films for In compositions ranging from 0.06 to 0.58,which are deposited by electron cyclotron resonance plasma enhanced metal organic chemical vapor deposition (ECR-PEMOCVD).The results of x-ray diffraction (XRD) in InGaN filns confirm that they have excellent c-axis orientation.The In content in the InGaN epilayers is checked by electron probe microanalysis (EPMA),which reveals that In fractions determined by XRD are in good agreement with the EPMA results.Atomic force microscopy measurements reveal that the grown films have a surface roughness that varies between 4.16 and 8.14nm.The results suggest that it is possible to deposit high-c-axis-orientation InGaN films with different In contents.The InGaN ternary alloy is intensively studied and of great interest because its bandgap energy can be continuously varied from the near-infrared region of ~0.7eV (InN) to the near-UV region of ~3.4eV (GaN),[1-4] and it is corrosion resistant.[6] Therefore,InGaN ternary alloys,particularly high-quality In-rich InGaN alloys,give potential applications in many crucial fields such as the whole solar spectrum,high efficiency and radiation hard multijunction solar cells,[5] high-brightness nitride green light emitting diodes and laser diodes,[1] and high-quality photoelectrodes for hydrogen production.[6]%We investigate the structural property and surface morphology of InxGa1-xN Rims for In compositions ranging from 0.06 to 0.58, which are deposited by electron cyclotron resonance plasma enhanced metal organic chemical vapor deposition (ECR-PEMOCVD). The results of x-ray diffraction (XRD) in InGaN 61ms confirm that they have excellent c-axis orientation. The In content in the InGaN epilayers is checked by electron probe microanalysis (EPMA), which reveals that In fractions determined by XRD are in good agreement with the EPMA results. Atomic force microscopy measurements reveal that the grown films have

  15. Fatal Bacillus cereus bacteremia in a patient with diabetes.

    Science.gov (United States)

    Orrett, F A

    2000-04-01

    This report describes a fatal case of Bacillus cereus septicemia in a patient with uncontrolled diabetes and re-emphasizes the potential seriousness of Bacillus infections in patients with compromised immune function.

  16. Human Neutrophils Kill Bacillus anthracis.

    Directory of Open Access Journals (Sweden)

    2005-11-01

    Full Text Available Bacillus anthracis spores cause natural infections and are used as biological weapons. Inhalation infection with B. anthracis, the etiological agent of anthrax, is almost always lethal, yet cutaneous infections usually remain localized and resolve spontaneously. Neutrophils are typically recruited to cutaneous but seldom to other forms of anthrax infections, raising the possibility that neutrophils kill B. anthracis. In this study we infected human neutrophils with either spores or vegetative bacteria of a wild-type strain, or strains, expressing only one of the two major virulence factors. The human neutrophils engulfed B. anthracis spores, which germinated intracellularly and were then efficiently killed. Interestingly, neutrophil killing was independent of reactive oxygen species production. We fractionated a human neutrophil granule extract by high-performance liquid chromatography and identified alpha-defensins as the component responsible for B. anthracis killing. These data suggest that the timely recruitment of neutrophils can control cutaneous infections and possibly other forms of B. anthracis infections, and that alpha-defensins play an important role in the potent anti-B. anthracis activity of neutrophils.

  17. Human neutrophils kill Bacillus anthracis.

    Directory of Open Access Journals (Sweden)

    Anne Mayer-Scholl

    2005-11-01

    Full Text Available Bacillus anthracis spores cause natural infections and are used as biological weapons. Inhalation infection with B. anthracis, the etiological agent of anthrax, is almost always lethal, yet cutaneous infections usually remain localized and resolve spontaneously. Neutrophils are typically recruited to cutaneous but seldom to other forms of anthrax infections, raising the possibility that neutrophils kill B. anthracis. In this study we infected human neutrophils with either spores or vegetative bacteria of a wild-type strain, or strains, expressing only one of the two major virulence factors. The human neutrophils engulfed B. anthracis spores, which germinated intracellularly and were then efficiently killed. Interestingly, neutrophil killing was independent of reactive oxygen species production. We fractionated a human neutrophil granule extract by high-performance liquid chromatography and identified alpha-defensins as the component responsible for B. anthracis killing. These data suggest that the timely recruitment of neutrophils can control cutaneous infections and possibly other forms of B. anthracis infections, and that alpha-defensins play an important role in the potent anti-B. anthracis activity of neutrophils.

  18. Human neutrophils kill Bacillus anthracis.

    Science.gov (United States)

    Mayer-Scholl, Anne; Hurwitz, Robert; Brinkmann, Volker; Schmid, Monika; Jungblut, Peter; Weinrauch, Yvette; Zychlinsky, Arturo

    2005-11-01

    Bacillus anthracis spores cause natural infections and are used as biological weapons. Inhalation infection with B. anthracis, the etiological agent of anthrax, is almost always lethal, yet cutaneous infections usually remain localized and resolve spontaneously. Neutrophils are typically recruited to cutaneous but seldom to other forms of anthrax infections, raising the possibility that neutrophils kill B. anthracis. In this study we infected human neutrophils with either spores or vegetative bacteria of a wild-type strain, or strains, expressing only one of the two major virulence factors. The human neutrophils engulfed B. anthracis spores, which germinated intracellularly and were then efficiently killed. Interestingly, neutrophil killing was independent of reactive oxygen species production. We fractionated a human neutrophil granule extract by high-performance liquid chromatography and identified alpha-defensins as the component responsible for B. anthracis killing. These data suggest that the timely recruitment of neutrophils can control cutaneous infections and possibly other forms of B. anthracis infections, and that alpha-defensins play an important role in the potent anti-B. anthracis activity of neutrophils.

  19. Hydrazine vapor inactivates Bacillus spores

    Science.gov (United States)

    Schubert, Wayne W.; Engler, Diane L.; Beaudet, Robert A.

    2016-05-01

    NASA policy restricts the total number of bacterial spores that can remain on a spacecraft traveling to any planetary body which might harbor life or have evidence of past life. Hydrazine, N2H4, is commonly used as a propellant on spacecraft. Hydrazine as a liquid is known to inactivate bacterial spores. We have now verified that hydrazine vapor also inactivates bacterial spores. After Bacillus atrophaeus ATCC 9372 spores deposited on stainless steel coupons were exposed to saturated hydrazine vapor in closed containers, the spores were recovered from the coupons, serially diluted, pour plated and the surviving bacterial colonies were counted. The exposure times required to reduce the spore population by a factor of ten, known as the D-value, were 4.70 ± 0.50 h at 25 °C and 2.85 ± 0.13 h at 35 °C. These inactivation rates are short enough to ensure that the bioburden of the surfaces and volumes would be negligible after prolonged exposure to hydrazine vapor. Thus, all the propellant tubing and internal tank surfaces exposed to hydrazine vapor do not contribute to the total spore count.

  20. Theoretical optimization and parametric study of n-on-p Al/x/Ga/1-x/As-GaAs graded band-gap solar cell

    Science.gov (United States)

    Hutchby, J. A.; Fudurich, R. L.

    1976-01-01

    A comprehensive theoretical model of the graded band-gap Al(x)Ga(1-x)As-GaAs solar cell is used to optimize the n-on-p cell. The model includes power losses due to surface, bulk, and junction minority-carrier recombination, series resistance, and photon reflection from an SiO antireflection coating of optimum thickness. The optimized cell has a junction depth/graded band-gap layer thickness of 1.0 micron, respective donor and acceptor concentrations of 4 x 10 to the 17th power and 2 x 10 to the 17th power per cu cm, and a surface AlAs mode fraction of x = 0.35. The optimized graded band-gap cell has an air-mass-zero efficiency of 17.7% (not corrected for a 13% front surface contact area) and is shown to be less sensitive than a similar n-on-p GaAs cell to material degradation in the form of decreased minority-carrier diffusion lengths and increased surface-recombination velocity

  1. Impact of photoluminescence temperature and growth parameter on the exciton localized in BxGa1-xAs/GaAs epilayers grown by MOCVD

    Science.gov (United States)

    Hidouri, Tarek; Saidi, Faouzi; Maaref, Hassen; Rodriguez, Philippe; Auvray, Laurent

    2016-10-01

    In this work, BxGa1-xAs/GaAs epilayers with three different boron compositions were elaborated by metal organic chemical vapor deposition (MOCVD) on GaAs (001) substrate. Structural study using High resolution X-ray diffraction (HRXRD) spectroscopy and Atomic Force Microscopy (AFM) have been used to estimate the boron fraction. The luminescence keys were carried out as functions of temperature in the range 10-300 K, by the techniques of photoluminescence (PL). The low PL temperature has shown an abnormal emission appeared at low energy side witch attributed to the recombination through the deep levels. In all samples, the PL peak energy and the full width at half maximum (FWHM), present an anomalous behavior as a result of the competition process between localized and delocalized carriers. We propose the Localized-state Ensemble model to explain the unusual photoluminescence behaviors. Electrical carriers generation, thermal escape, recapture, radiative and non-radiative lifetime are taken into account. The temperature-dependent photoluminescence measurements were found to be in reasonable agreement with the model of localized states. We controlled the evolution of such parameters versus composition by varying the V/III ratio to have a quantitative and qualitative understanding of the recombination mechanisms. At high temperature, the model can be approximated to the band-tail-state emission.

  2. X-ray luminescence spectra of graded-gap Al xGa 1- xAs structures irradiated by alpha particle

    Science.gov (United States)

    Šilėnas, A.; Požela, J.; Požela, K.; Jucienė, V.; Dapkus, L.

    2011-12-01

    The influence of 241Am alpha particle irradiation on X-ray luminescence spectra of the graded-gap AlxGa1-xAs structures of different thicknesses is investigated. It is observed that the integral X-ray luminescence intensity of nonirradiated thin (15 μm) structure is 1.4 times less than that in the thick (32 μm) structure, and this difference increases to 3 times after 3×1010 cm-2 dose of irradiation by alpha particle. The X-ray luminescence intensity of the energy hνFgg is responsible of that large difference, because it shifts the X-ray generated carriers to the narrow-gap surface with great nonradiative surface recombination rate. The alpha particle irradiation increases nonradiative recombination rate and causes a decrease of the X-ray luminescence intensity of all spectra lines in the thin (15 μm) detector. The most significant drop in X-ray luminescence efficiency is observed from the region at narrow-gap surface after the initial stage (109 cm-2 dose) of alpha particle irradiation. In the 32 μm thick detector, the luminescence intensity of the energy hν=1.8 eV does not change up to 2×1010 cm-2 of alpha particle irradiation dose. That means the high irradiation hardness of the thick graded-gap X-ray detector with optical response.

  3. Synthesis of MnxGa1-xFe2O4 magnetic nanoparticles by thermal decomposition method for medical diagnosis applications

    Science.gov (United States)

    Sánchez, Javier; Cortés-Hernández, Dora Alicia; Escobedo-Bocardo, José Concepción; Almanza-Robles, José Manuel; Reyes-Rodríguez, Pamela Yajaira; Jasso-Terán, Rosario Argentina; Bartolo-Pérez, Pascual; De-León-Prado, Laura Elena

    2017-04-01

    In this work, the synthesis of MnxGa1-xFe2O4 (x=0-1) nanosized particles by thermal decomposition method, using tetraethylene glycol (TEG) as a reaction medium, has been performed. The crystalline structure of the inverse spinel obtained in all the cases was identified by X-ray diffraction (XRD). Vibration sample magnetometry (VSM) was used to evaluate the magnetic properties of ferrites and to demonstrate their superparamagnetic behavior and the increase of magnetization values due to the Mn2+ ions incorporation into the FeGa2O4 structure. Transmission electron microscopy, energy dispersive spectroscopy (TEM-EDS) and X-ray photoelectron spectroscopy (XPS) were used to characterize the obtained magnetic nanoparticles (MNPs). These MNPs showed a near spherical morphology, an average particle size of 5.6±1.5 nm and a TEG coating layer on their surface. In all the cases MNPs showed no response when submitted to an alternating magnetic field (AMF, 10.2 kA/m, 354 kHz) using magnetic induction tests. These results suggest that the synthesized nanoparticles can be potential candidates for their use in biomedical areas.

  4. Phase separation in single In(x)Ga(1-x)N nanowires revealed through a hard X-ray synchrotron nanoprobe.

    Science.gov (United States)

    Segura-Ruiz, J; Martínez-Criado, G; Denker, C; Malindretos, J; Rizzi, A

    2014-03-12

    In this work, we report on the composition, short- and long-range structural order of single molecular beam epitaxy grown In(x)Ga(1-x)N nanowires using a hard X-ray synchrotron nanoprobe. Nano-X-ray fluorescence mapping reveals an axial and radial heterogeneous elemental distribution in the single wires with Ga accumulation at their bottom and outer regions. Polarization-dependent nano-X-ray absorption near edge structure demonstrates that despite the elemental modulation, the tetrahedral order around the Ga atoms remains along the nanowires. Nano-X-ray diffraction mapping on single nanowires shows the existence of at least three different phases at their bottom: an In-poor shell and two In-rich phases. The alloy homogenizes toward the top of the wires, where a single In-rich phase is observed. No signatures of In-metallic precipitates are observed in the diffraction spectra. The In-content along the single nanowires estimated from X-ray fluorescence and diffraction data are in good agreement. A rough picture of these phenomena is briefly presented. We anticipate that this methodology will contribute to a greater understanding of the underlying growth concepts not only of nanowires but also of many nanostructures in materials science.

  5. Influence of Indium-Percentage Variation on Dynamical Characteristics of InxGa1-xAs/GaAs(001) Quantum Dot Lasers

    CERN Document Server

    Borji, Mahdi Ahmadi

    2015-01-01

    The influence of indium percentage on dynamical characteristics of InxGa1-xAs/GaAs(001) quantum dot lasers (QDLs) is investigated. Energy levels of self-organized truncated-cone-shape QDs are calculated by means of the eight-band k.p model, and their dependence to indium percentage is surveyed. Then, by presenting a three-level model and numerical solution of the resulting rate equations, laser properties are determined. Our results show that inclusion of more indium gives rise in the reduced energy gap and electron-hole recombination energy. Moreover, lasing process for both Ground State (GS) and Excited States (ES) sound to be sensitive to indium percentage. It is shown that rise of indium percentage at fixed injected current results in the increased ES turn-on delay and GS photon number and 3dB modulation bandwidth, and decreased ES photon number, GS turn on delay, amplitude of relaxation oscillations, output power, and ES 3dB modulation bandwidth; but has no effect on threshold current and laser gain. At ...

  6. The effect of dielectric constant on binding energy and impurity self-polarization in a GaAs-Ga1- x Al x As spherical quantum dot

    Science.gov (United States)

    Mese, A. I.; Cicek, E.; Erdogan, I.; Akankan, O.; Akbas, H.

    2017-03-01

    The ground state, 1s, and the excited state, 2p, energies of a hydrogenic impurity in a GaAs-Ga1- x Al x As spherical quantum dot, are computed as a function of the donor positions. We study how the impurity self-polarization depends on the location of the impurity and the dielectric constant. The excited state anomalous impurity self-polarization in the quantum dot is found to be present in the absence of any external influence and strongly depends on the impurity position and the radius of the dot. Therefore, the excited state anomalous impurity self-polarization can give information about the impurity position in the system. Also, the variation of E_{b1s} and E_{b2p} with the dielectric constant can be utilized as a tool for finding out the correct dielectric constant of the dot material by measuring the 1s or 2p state binding energy for a fixed dot radius and a fixed impurity position.

  7. Anisotropic optical polarization dependence on internal strain in AlGaN epilayer grown on Al x Ga1-x N templates

    Science.gov (United States)

    Long, Hanling; Wu, Feng; Zhang, Jun; Wang, Shuai; Chen, Jingwen; Zhao, Chong; Feng, Zhe Chuan; Xu, Jintong; Li, Xiangyang; Dai, Jiangnan; Chen, Changqing

    2016-10-01

    Anisotropic optical polarization of AlGaN has been one of the major challenges responsible for the poor efficiency of AlGaN-based ultraviolet light emitting diodes (UV LEDs). In this work, we experimentally investigated the effect of internal strain on the optical polarization of AlGaN epilayers which were pseudomorphically grown on Al x Ga1-x N templates with Al composition changing from 0.1 to 0.42. High-resolution x-ray diffraction and reciprocal space mapping were conducted to determine the crystal quality and strain status. Polarization-dependent photoluminescence (PL) measurement was performed to study the degree of polarization (DOP) of light emission from lateral facet of the AlGaN epilayer. The result showed that the DOP increased from  -0.69 to  -0.24 with the in-plane strain changing from tensile status (1.19%) to compressive status (-0.70%) and it exhibited a strong dependence of the DOP on the strain. These results demonstrated that the compressive in-plane strain could facilitate TE mode emission from AlGaN, which providing a potential way to enhance the surface light emission of AlGaN-based UV LEDs via strain management of the active region.

  8. Spontaneous core–shell elemental distribution in In-rich In(x)Ga1-xN nanowires grown by molecular beam epitaxy.

    Science.gov (United States)

    Gómez-Gómez, M; Garro, N; Segura-Ruiz, J; Martinez-Criado, G; Cantarero, A; Mengistu, H T; García-Cristóbal, A; Murcia-Mascarós, S; Denker, C; Malindretos, J; Rizzi, A

    2014-02-21

    The elemental distribution of self-organized In-rich In(x)Ga1-xN nanowires grown by plasma-assisted molecular beam epitaxy has been investigated using three different techniques with spatial resolution on the nanoscale. Two-dimensional images and elemental profiles of single nanowires obtained by x-ray fluorescence and energy-dispersive x-ray spectroscopy, respectively, have revealed a radial gradient in the alloy composition of each individual nanowire. The spectral selectivity of resonant Raman scattering has been used to enhance the signal from very small volumes with different elemental composition within single nanowires. The combination of the three techniques has provided sufficient sensitivity and spatial resolution to prove the spontaneous formation of a core–shell nanowire and to quantify the thicknesses and alloy compositions of the core and shell regions. A theoretical model based on continuum elastic theory has been used to estimate the strain fields present in such inhomogeneous nanowires. These results suggest new strategies for achieving high quality nonpolar heterostructures.

  9. Solar-blind Al x Ga1- x N ( x > 0.45) p- i- n photodiodes with a polarization- p-doped emitter

    Science.gov (United States)

    Kuznetsova, N. V.; Nechaev, D. V.; Shmidt, N. M.; Karpov, S. Yu.; Rzheutskii, N. V.; Zemlyakov, V. E.; Kaibyshev, V. Kh.; Kazantsev, D. Yu.; Troshkov, S. I.; Egorkin, V. I.; Ber, B. Ya.; Lutsenko, E. V.; Ivanov, S. V.; Jmerik, V. N.

    2016-06-01

    Polarization-induced p-type doping of AlGaN layers with high aluminum content during plasmaassisted MBE growth has been studied. It is shown that a gradient of the AlN molar fraction in AlGaN (composition gradient) on a level of 0.005 nm-1 must be set in order to obtain a hole concentration of ~1018 cm-3 (measured by the C- V method) in Al x Ga1- x N:Mg ( x = 0.52-0.32) layers with dopant concentration [Mg] = 1.3 × 1018 cm-3. p- i- n photodiodes based on AlGaN heterostructures with such layers as p-emitters showed maximum photoresponsitivity in the solar-blind wavelength range (λ = 281 nm) about 35 and 48 mA/W at reverse bias voltage U = 0 and-5 V, respectively, and exhibited a dark current density of 3.9 × 10-8 A/cm2 at U =-5 V.

  10. Effect of Misfit Dislocation Originated from Strained Layer on Photoluminescence Properties of InxGa1-xN/GaN Multiple Quantum Wells

    Institute of Scientific and Technical Information of China (English)

    L(U) Wei; LI Da-Bing; LI Chao-Rong; CHEN Gang; ZHANG Ze

    2005-01-01

    @@ Inx Ga1-xN/GaN multiple quantum well (MQW) samples with strain-layer thickness larger/less than the critical one are investigated by temperature-dependent photoluminescence and transmission electron microscopy, and double crystal x-ray diffraction.For the sample with the strained-layer thickness greater than the critical thickness, we observe a high density of threading dislocations generated at the MQW layers and extended to the cap layer.These dislocations result from relaxation of the strain layer when its thickness is beyond the critical thickness.For the sample with the strained-layer thickness greater than the critical thickness, temperature-dependent photoluminescence measurements give evidence that dislocations generated from the MQW layers due to strain relaxation are main reason of the poor photoluminescence property, and the dominating status change of the main peak with increasing temperature is attributed to the change of the radiative recombination from the areas including dislocations to the ones excluding dislocations.

  11. Silicon doping of semipolar (11 2 bar 2)Alx Ga1-x N (0.50 ≤ x ≤ 0.55)

    Science.gov (United States)

    Dinh, Duc V.; Pampili, Pietro; Parbrook, Peter J.

    2016-10-01

    The effect of silicon doping on the growth and properties of ∼ 1.0 μm-thick Alx Ga1-x N(0.50 ≤ x ≤ 0.55) layers grown on semipolar (11 2 bar 2) AlN templates by metalorganic vapour phase epitaxy was studied. The layers were grown with different disilane/group-III precursors ratios that varied from 2.8×10-5 to 3.4×10-4. The surface morphology of the Si-doped (11 2 bar 2) AlGaN layers showed undulations along [ 1 1 bar 00 ] AlGaN , AlN with a root-mean square roughness of about 4.0 nm within a scan range of 20 × 20 μm2 . Different photoluminescence peaks have been linked to negatively charged cation vacancies (VIII3-) and their complexes with impurities such as VIII3- - 3ON1+, (VIII complex)1-, and (VIII complex)2-. The optimised AlGaN:Si layer exhibited a carrier concentration of ∼1.2×1019 cm-3, a carrier mobility of 30.7 cm2/V s, and a resistivity of 0.018 Ω cm , as determined by Hall-effect measurements at room temperature. A correlation between the resistivity and luminescence emission intensities of AlGaN near-band-edge and impurity-related complexes was found.

  12. The Increase of Radiative Lifetime of Free Excitons in Selectively Si-doped GaAs/AlxGa1-xAs Heterostructures

    Directory of Open Access Journals (Sweden)

    Jurgis KUNDROTAS

    2014-06-01

    Full Text Available The time resolved photoluminescence spectra of selectively Si-doped GaAs/AlxGa1-xAs heterostructures have been investigated over a wide temperature range from 3.6 K to 300 K in order to identify possible mechanisms behind the observed increase in radiative lifetime of free excitons. Possible mechanisms of carrier recombination are discussed with emphasis on the unique traits of excitonic photoluminescence. The intensive lines found in the spectra of the heterostructures are associated with the formation and enhancement of free exciton emission in the flat band region of an active i-GaAs layer. We have established that the free exciton radiative lifetime in the heterostructures increases about two times, up to 1.44 ns in comparison with lifetime 0.6 ns of i-GaAs layer without a heterostructure for first sample and up to 0.92 ns from 0.4 ns for second sample at 3.6 K temperature. DOI: http://dx.doi.org/10.5755/j01.ms.20.2.6329

  13. Distribution of cations in wurtzitic InxGa1-xN and InxAl1-xN alloys: Consequences for energetics and quasiparticle electronic structures

    Science.gov (United States)

    de Carvalho, Luiz Cláudio; Schleife, André; Furthmüller, Jürgen; Bechstedt, Friedhelm

    2012-03-01

    The ternary, isostructural, wurtzite-derived group-III mononitride alloys InxGa1-xN and InxAl1-xN are reexamined within a cluster expansion approach. Using density functional theory together with the AM05 exchange-correlation functional, the total energies and the optimized atomic geometries of all 22 clusters classes of the cluster expansion for each material system are calculated. The computationally demanding calculation of the corresponding quasiparticle electronic structures is achieved for all cluster classes by means of a recently developed scheme to approximately solve the quasiparticle equation based on the HSE06 hybrid functional and the G0W0 approach. Using two different alloy statistics, the configurational averages for the lattice parameters, the mixing enthalpies, and the bulk moduli are calculated. The composition-dependent electronic structures of the alloys are discussed based on configurationally averaged electronic states, band gaps, and densities of states. Ordered cluster arrangements are found to be energetically rather unfavorable, however, they possess the smallest energy gaps and, hence, contribute to light emission. The influence of the alloy statistics on the composition dependencies and the corresponding bowing parameters of the band gaps is found to be significant and should, hence, lead to different signatures in the optical-absorption or -emission spectra.

  14. Influence of In-N Clusters on Band Gap Energy of Dilute Nitride In x Ga1-x N y As1-y

    Science.gov (United States)

    Zhao, Chuan-Zhen; Guo, Heng-Fei; Chen, Li-Ying; Tang, Chun-Xiao; Lu, Ke-Qing

    2016-05-01

    The In-N clusters form in the dilute nitride InxGa1-xNyAs1-y alloys after annealing. It is found that the formation of the In-N clusters not only raises the N levels lying above the conduction band minimum (CBM) of InGaAs, but also raises the N levels below the CBM of InGaAs, leading to the variation of the impurity-host interaction. The blueshift of the band gap energy is relative to the variation of the impurity-host interaction. In order to describe the blueshift of the band gap energy due to the formation of the In-N clusters, a model is developed. It is found that the model can describe the blueshift of the band gap energy well. In addition, it is found the blueshift of the band gap energy due to the atom interdiffusion at the interface can be larger than that due to the formation of the In-N clusters. Supported by the National Natural Science Foundation of China under Grant No. 61504094, Tinjin Research Program of Application Foundation and Advanced Technology under No. 15JCYBJC16300, and Tianjin City High School Science and Technology Fund Planning Project No. 20120609

  15. Measurement of Metabolic Activity in Dormant Spores of Bacillus Species

    Science.gov (United States)

    2015-01-14

    SECURITY CLASSIFICATION OF: Spores of Bacillus megaterium and Bacillus subtilis were harvested shortly after release from sporangia, incubated under...Dec-2014 Approved for Public Release; Distribution Unlimited Final Report: Measurement of Metabolic Activity in Dormant Spores of Bacillus Species...Research Office P.O. Box 12211 Research Triangle Park, NC 27709-2211 spores, Bacillus , spore dormancy, 3-phosphoglycerate REPORT DOCUMENTATION PAGE 11

  16. Diversity and applications of Bacillus bacteriocins.

    Science.gov (United States)

    Abriouel, Hikmate; Franz, Charles M A P; Ben Omar, Nabil; Gálvez, Antonio

    2011-01-01

    Members of the genus Bacillus are known to produce a wide arsenal of antimicrobial substances, including peptide and lipopeptide antibiotics, and bacteriocins. Many of the Bacillus bacteriocins belong to the lantibiotics, a category of post-translationally modified peptides widely disseminated among different bacterial clades. Lantibiotics are among the best-characterized antimicrobial peptides at the levels of peptide structure, genetic determinants and biosynthesis mechanisms. Members of the genus Bacillus also produce many other nonmodified bacteriocins, some of which resemble the pediocin-like bacteriocins of the lactic acid bacteria (LAB), while others show completely novel peptide sequences. Bacillus bacteriocins are increasingly becoming more important due to their sometimes broader spectra of inhibition (as compared with most LAB bacteriocins), which may include Gram-negative bacteria, yeasts or fungi, in addition to Gram-positive species, some of which are known to be pathogenic to humans and/or animals. The present review provides a general overview of Bacillus bacteriocins, including primary structure, biochemical and genetic characterization, classification and potential applications in food preservation as natural preservatives and in human and animal health as alternatives to conventional antibiotics. Furthermore, it addresses their environmental applications, such as bioprotection against the pre- and post-harvest decay of vegetables, or as plant growth promoters.

  17. DECONTAMINATION ASSESSMENT OF BACILLUS ANTHRACIS, BACILLUS SUBTILIS, AND GEOBACILLUS STEAROTHERMOPHILUS SPORES ON INDOOR SURFACTS USING A HYDROGEN PERIOXIDE GAS GENERATOR

    Science.gov (United States)

    Aims: To evaluate the decontamination of Bacillus anthracis, Bacillus subtilis, and Geobacillus stearothermophilus spores on indoor surface materials using hydrogen peroxide gas. Methods and Results: B. anthracis, B. subtilis, and G. Stearothermophilus spores were dried on seven...

  18. Electronic band structure of GaAs/AlxGa1-xAs superlattice in a periodic magnetic field%GaAs/AlxGa1-xAs超晶格在周期性磁场中电子的能带结构

    Institute of Scientific and Technical Information of China (English)

    张彦敏; 成泽

    2006-01-01

    在有效质量理论近似下,采用磁Kronig-Penny势场,精确求解了GaAs/AlxGa1-xAs超晶格中的电子在周期性磁场中形成的能带结构.考虑不同方向上的周期性磁调制以及电调制的作用下三维电子的运动行为,发现电子不仅在z方向形成能带,而且在y方向也可以形成一些可允许的能带.同时详细讨论了电子能带结构的特点及其形成机制.

  19. The supercoiling of Bacillus subtilis

    Science.gov (United States)

    Mendelson, Neil H.

    2003-03-01

    Cylindrical shaped cells of Bacillus subtilis (0.7 X 4 mm) grow with twist and when prevented from separating at cell division form long filaments that writhe and supercoil to produce plectonemic fibers. By repetition macrofibers arise consisting of structures mm in length with loops at both ends of a twisted shaft. The entire structure is topologically a single filament. All the cells in a macrofiber also grow with twist consequently as a fiber elongates its loop ends rotate about the axis of the fiber shaft in opposite directions relative to one another. This holds for both right and left-handed structures, with any degree of twist. Although the individual cells grow with constant twist, the rate of loop rotation increases as a function of fiber length. Theory suggests that there is a gradient of rotation rates along the length of a fiber ranging from maxima at the loop ends to zero at the center of its length. In fibers prevented from rotating at one end the rotation rate gradient ranges from zero at the blocked end to maximum at the free end as shown here. When loop rotation at both ends is blocked fibers supercoil and their loop ends move toward one another. Newly designed force gauges were used to measure the tension engendered by supercoiling of such fibers. The findings illustrate a micromachine -like behavior of macrofibers, powered by cell growth, twisting and supercoiling. Biological functions of the micromachine such as self-assembly, translational motions over solid surfaces, and the dragging objects over surfaces appear to utilize only a small fraction of the total power available from the macrofiber micromachine. Collaborators: J.J. Thwaites, P. Shipman, D. Roy, and L. Cheng.

  20. GaAs/AlxGa1-xAs表面单量子阱原位光调制反射光谱研究%IN-SITU PHOTO-MODULATED REFLECTANCE STUDY ON GaAs/AlxGa1-xAs SINGLE SURFACE QUANTUM WELLS

    Institute of Scientific and Technical Information of China (English)

    缪中林; 陈平平; 陆卫; 徐文兰; 李志锋; 蔡炜颖; 史国良; 沈学础

    2001-01-01

    We have studied the optical properties of surface quantum wells with different width of wells (5nm and 10nm) by means of In-situ photo-modulated reflectance(PR) spectroscopy on a molecular beam epitaxy system. The surface quantum well is confined on one side by the vacuum and on the other side by AlxGa1-xAs barrier. In experiments, we have observed clearly the transitions between the confined heavy and light hole states to the confined electron states. The transitions of the excited states in 10nm surface quantum well are observed at first. The effects of the surface on the confined states have been well studied by combination of the PR spectra and the effective mass approximation theory.%用分子束外延(MBE)方法生长了两种典型阱宽(5nm和10nm)的表面单量子阱,表面量子阱中的受限态被表面真空势垒和AlxGa1-xAs势垒束缚.以原位光调制光谱(PR)作为测量手段,明确观察到表面量子阱中空穴子带到电子子带的光跃迁以及真空势垒对于不同阱宽表面量子阱中的受限电子态的束缚作用,并且看到了10nm表面量子阱激发态的跃迁峰.采用有效质量近似理论对实验结果作了较好的解释.

  1. 一株抗木霉菌解淀粉芽孢杆菌的筛选与鉴定%Screening Identification of Bacillus amyloliquefaciens Resisting to Trichoderma Viride

    Institute of Scientific and Technical Information of China (English)

    努尔孜亚; 管建华; 贾培松; 魏鹏; 罗影; 贾文捷; 郝敬喆

    2016-01-01

    [目的]将一株从阜康市食用菌栽培基地棉籽壳发酵料中的分离得到的芽孢杆菌FKB-1,依据形态学与16S rDNA序列比对明确其分类地位.[方法]采用对峙平板法进行初筛、复筛,然后利用抑菌圈法测定抑菌效果,并镜检菌丝生长情况.通过形态学观察,生理生化及16S rDNA基因序列对比分析研究其分类地位.[结果]生防细菌FKB-1对绿色木霉菌具有稳定的抑菌效果,抑菌直径率达57%;同时16S rDNA序列比对结果显示其为解淀粉芽孢杆菌.[结论]FKB-1是一株抗木霉菌的生防解淀粉芽孢杆菌.

  2. Bacillus cereus bacteremia in a preterm neonate.

    Science.gov (United States)

    Hilliard, Nicholaus J; Schelonka, Robert L; Waites, Ken B

    2003-07-01

    Bacillus cereus is an uncommon but potentially serious bacterial pathogen causing infections of the bloodstream, lungs, and central nervous system of preterm neonates. A case of bacteremia caused by B. cereus in a 19-day-old preterm neonate who was successfully treated with vancomycin, tobramycin, meropenem, and clindamycin is described. Implications for the diagnostic laboratory and clinicians when Bacillus species are detected in normally sterile sites are discussed, and the small numbers of infant infections proven to be due to this organism that have been described previously are reviewed.

  3. Bacillus cereus as a nongastrointestinal pathogen

    Directory of Open Access Journals (Sweden)

    Pavani G.

    2014-02-01

    Full Text Available The potential of Bacillus cereus to cause systemic infections is of serious concern. Apart from Gastrointestinal infections, it causes respiratory tract infections, nosocomial infections, eye infections, CNS infections, cutaneous infections, endocarditis, osteomyelitis and urinary tract infections. The potential of this bacterium to cause life threatening infections has increased. Trauma is an important predisposing factor for Bacillus cereus infections. The maintenance of skin and mucous membrane integrity limits infection by this micro-organism. [Int J Res Med Sci 2014; 2(1.000: 28-30

  4. Comparative analysis of two-component signal transduction systems of Bacillus cereus, Bacillus thuringiensis and Bacillus anthracis

    NARCIS (Netherlands)

    Been, M.W.H.J. de; Francke, C.; Moezelaar, R.; Abee, T.; Siezen, R.J.

    2006-01-01

    Members of the Bacillus cereus group are ubiquitously present in the environment and can adapt to a wide range of environmental fluctuations. In bacteria, these adaptive responses are generally mediated by two-component signal transduction systems (TCSs), which consist of a histidine kinase (HK) and

  5. BOOK REVIEW – BACILLUS THURINGIENSIS: A CORNERSTONE OF MODERN AGRICULTURE BACILLUS THURINGIENSIS

    Science.gov (United States)

    Are you interested in the technical issues surrounding the use of Bacillus thuringiensis pesticidal traits as sprays and as plant incorporated protectants (transgenic crops)? Should the dimensions of human health, ecology, entomology, risk assessment, resistance management, and d...

  6. X-ray standing wave studies of strained InxGa1-xAs/InP short-period superlattices

    Science.gov (United States)

    Aruta, Carmela; Lamberti, Carlo; Gastaldi, Luigi; Boscherini, Federico

    2003-05-01

    We report an x-ray standing wave (XSW) study on a set of structurally well-characterized InxGa1-xAs/InP short-period superlattices grown by metal-organic chemical vapor deposition and chemical-beam epitaxy techniques. It was possible to model the x-ray standing wave profiles only once the superlattice period has been assumed to be constituted by four layers of well-defined chemical composition [barrier (InP), first interface (InAs0.7P0.3), well (In0.53Ga0.47As), and second interface (In0.53Ga0.47As0.7P0.3)], and of variable thickness. The thickness of the four layers have been obtained by fitting the high resolution x-ray diffraction profiles of the heterostructures. The presence of partially disordered interface layers, as evidenced by a transmission electron microscopy study, causes a significant reduction of the coherent fraction, F, of both Ga and As atoms. The difference in F values among measured samples illustrates how the XSW can provide important information on the quality of semiconductor superlattices. Comparison with a "long period (160 Å)" In0.53Ga0.47As/InP superlattice, where the role played by InAs0.7P0.3 and In0.53Ga0.47As0.7P0.3 interface layers is negligible, confirms this picture. The coherent fraction of both As and Ga correlates well with the average perpendicular lattice misfit determined by x-ray diffraction.

  7. Differentiation of Bacillus anthracis from Bacillus cereus by gas chromatographic whole-cell fatty acid analysis.

    OpenAIRE

    Lawrence, D.; Heitefuss, S; Seifert, H S

    1991-01-01

    Three strains of Bacillus anthracis and seven strains of Bacillus cereus were grown on complex medium and on synthetic medium. Gas chromatographic analysis of whole-cell fatty acids of strains grown on complex medium gave nearly identical fatty acid patterns. Fatty acid patterns of strains grown on synthetic medium showed a high content of branched-chain fatty acids. Significant differences between the fatty acid patterns of the two species were found. Odd iso/anteiso fatty acid ratios were a...

  8. High Production of Thermostable β-Galactosidase of Bacillus stearothermophilus in Bacillus subtilis

    OpenAIRE

    1985-01-01

    By cloning the β-galactosidase gene of Bacillus stearothermophilus IAM11001 (ATCC 8005) into Bacillus subtilis, enzyme production was enhanced 50 times. β-Galactosidase could be purified to 80% homogeneity by incubating the cell extract of B. subtilis at 70°C for 15 min, followed by centrifugation to remove the denatured proteins. Because of its heat stability and ease of production, β-galactosidase is suitable for application in industrial processes.

  9. Comparative genome analysis of Bacillus cereus group genomes withBacillus subtilis

    Energy Technology Data Exchange (ETDEWEB)

    Anderson, Iain; Sorokin, Alexei; Kapatral, Vinayak; Reznik, Gary; Bhattacharya, Anamitra; Mikhailova, Natalia; Burd, Henry; Joukov, Victor; Kaznadzey, Denis; Walunas, Theresa; D' Souza, Mark; Larsen, Niels; Pusch,Gordon; Liolios, Konstantinos; Grechkin, Yuri; Lapidus, Alla; Goltsman,Eugene; Chu, Lien; Fonstein, Michael; Ehrlich, S. Dusko; Overbeek, Ross; Kyrpides, Nikos; Ivanova, Natalia

    2005-09-14

    Genome features of the Bacillus cereus group genomes (representative strains of Bacillus cereus, Bacillus anthracis and Bacillus thuringiensis sub spp israelensis) were analyzed and compared with the Bacillus subtilis genome. A core set of 1,381 protein families among the four Bacillus genomes, with an additional set of 933 families common to the B. cereus group, was identified. Differences in signal transduction pathways, membrane transporters, cell surface structures, cell wall, and S-layer proteins suggesting differences in their phenotype were identified. The B. cereus group has signal transduction systems including a tyrosine kinase related to two-component system histidine kinases from B. subtilis. A model for regulation of the stress responsive sigma factor sigmaB in the B. cereus group different from the well studied regulation in B. subtilis has been proposed. Despite a high degree of chromosomal synteny among these genomes, significant differences in cell wall and spore coat proteins that contribute to the survival and adaptation in specific hosts has been identified.

  10. Properties of Schottky Barrier Diodes on (In(x)Ga(1-x))₂O₃ for 0.01 ≤ x ≤ 0.85 Determined by a Combinatorial Approach.

    Science.gov (United States)

    von Wenckstern, H; Splith, D; Werner, A; Müller, S; Lorenz, M; Grundmann, M

    2015-12-14

    We investigated properties of an (In(x)Ga(1-x))2O3 thin film with laterally varying cation composition that was realized by a large-area offset pulsed laser deposition approach. Within a two inch diameter thin film, the composition varies between 0.01 ≤ x ≤ 0.85, and three crystallographic phases (cubic, hexagonal, and monoclinic) were identified. We observed a correlation between characteristic parameters of Schottky barrier diodes fabricated on the thin film and its chemical and structural material properties. The highest Schottky barriers and rectification of the diodes were found for low indium contents. The thermal stability of the diodes is also best for Ga-rich parts of the sample. Conversely, the series resistance is lowest for large In content. Overall, the (In(x)Ga(1-x))2O3 alloy is well-suited for potential applications such as solar-blind photodetectors with a tunable absorption edge.

  11. Luminescence of narrow RIE etched In 1-xGa xAs/InP and GaAs/Ga 1-xAl xAs quantum wires

    Science.gov (United States)

    Marzin, J. Y.; Izrael, A.; Birotheau, L.; Sermage, B.; Roy, N.; Azoulay, R.; Robein, D.; Benchimol, J.-L.; Henry, L.; Thierry-Mieg, V.; Ladan, F. R.; Taylor, L.

    We present low temperature optical data obtained on narrow quantum wires, fabricated with reactive ion etching and MOCVD overgrowth, in both In 1- xGa xAs/InP and GaAs/Ga 1- xAl xAs systems. One-dimensional quantum confinement effects are observed in both cases for the lowest lateral sizes ( Lx), in which carrier lifetimes remain of the order of one nanosecond. For In 1- xGa xAs/InP wires ( Lx down to 15 nm, quantum shifts of the photoluminescence peak (up to 30 meV) are observed. For GaAs/Ga 1- xAl xAs wires ( Lx down to 20 nm). We present photoluminescence excitation spectra showing additional lateral confinement effects, concerning mainly the polarization of the observed transitions.

  12. Bacillus cereus panophthalmitis: source of the organism.

    Science.gov (United States)

    Shamsuddin, D; Tuazon, C U; Levy, C; Curtin, J

    1982-01-01

    Serious infections with the "nonpathogenic" Bacillus species are increasingly being recognized, especially in drug abusers. Cases of panophthalmitis secondary to infection with Bacillus cereus, with and without associated bacteremia, have been reported. Three drug abusers with panophthalmitis seen in our hospitals during a three-year period are described, and the similar cases reported in the literature are reviewed. The syndrome is characterized by an acute onset with a rapid fulminating course that eventually leads to enucleation or evisceration of the eye. The pathogenic mechanism is unknown, but is probably related to the production of toxin (lecithinase) by B. cereus. Clindamycin appears to be the antibiotic of choice in the treatment of this infection. In order to identify a possible source of the organism, 59 samples of heroin and injection paraphernalia were cultured. Twenty cultures yielded organisms; Bacillus species were the predominant isolates. Thirty-eight percent of the isolates were identified as B. cereus. Thus, infections caused by Bacillus species in drug abusers can probably be associated with intravenous heroin abuse because heroin mixtures and injection paraphernalia are frequently contaminated with this organism.

  13. Protein-Tyrosine Phosphorylation in Bacillus subtilis

    DEFF Research Database (Denmark)

    Mijakovic, Ivan; Petranovic, Dina; Bottini, N.

    2005-01-01

    phosphorylation, indicating that this post-translational modifi cation could regulate physiological processes ranging from stress response and exopolysaccharide synthesis to DNA metabolism. Some interesting work in this fi eld was done in Bacillus subtilis , and we here present the current state of knowledge...

  14. Surfactin production by strains of Bacillus mojavensis

    Science.gov (United States)

    Bacillus mojavensis, RRC101 is an endophytic bacterium patented for control of fungal diseases in maize and other plants. DNA fingerprint analysis of the rep-PCR fragments of 35 B. mojavensis and 4 B. subtilis strains using the Diversilab genotyping system revealed genotypic distinctive strains alon...

  15. Complete Genome of Bacillus subtilis Myophage Grass

    OpenAIRE

    Miller, Stanton Y.; Colquhoun, Jennifer M.; Perl, Abbey L.; Chamakura, Karthik R.; Kuty Everett, Gabriel F.

    2013-01-01

    Bacillus subtilis is a ubiquitous Gram-positive model organism. Here, we describe the complete genome of B. subtilus myophage Grass. Aside from genes encoding core proteins pertinent to the life cycle of the phage, Grass has several interesting features, including an FtsK/SpoIIIE protein.

  16. Complete Genome of Bacillus thuringiensis Myophage Spock

    OpenAIRE

    Maroun, Justin W.; Whitcher, Kelvin J.; Chamakura, Karthik R.; Kuty Everett, Gabriel F.

    2013-01-01

    Bacillus thuringiensis is a Gram-positive, sporulating soil microbe with valuable pesticide-producing properties. The study of bacteriophages of B. thuringiensis could provide new biotechnological tools for the use of this bacterium. Here, we present the complete annotated genome of Spock, a myophage of B. thuringiensis, and describe its features.

  17. Complete Genome of Bacillus megaterium Podophage Pookie

    OpenAIRE

    Ladzekpo, Tsonyake N.; DeCrescenzo, Andrew J.; Hernandez, Adriana C.; Kuty Everett, Gabriel F.

    2015-01-01

    Bacteriophage Pookie is a novel podophage, isolated from soil, which infects Bacillus megaterium. B. megaterium is an important host for large-scale recombinant protein production. Here, we present the complete genome of phage Pookie and describe its core features.

  18. Methyl Iodide Fumigation of Bacillus anthracis Spores.

    Science.gov (United States)

    Sutton, Mark; Kane, Staci R; Wollard, Jessica R

    2015-09-01

    Fumigation techniques such as chlorine dioxide, vaporous hydrogen peroxide, and paraformaldehyde previously used to decontaminate items, rooms, and buildings following contamination with Bacillus anthracis spores are often incompatible with materials (e.g., porous surfaces, organics, and metals), causing damage or residue. Alternative fumigation with methyl bromide is subject to U.S. and international restrictions due to its ozone-depleting properties. Methyl iodide, however, does not pose a risk to the ozone layer and has previously been demonstrated as a fumigant for fungi, insects, and nematodes. Until now, methyl iodide has not been evaluated against Bacillus anthracis. Sterne strain Bacillus anthracis spores were subjected to methyl iodide fumigation at room temperature and at 550C. Efficacy was measured on a log-scale with a 6-log reduction in CFUs being considered successful compared to the U.S. Environmental Protection Agency biocide standard. Such efficacies were obtained after just one hour at 55 °C and after 12 hours at room temperature. No detrimental effects were observed on glassware, PTFE O-rings, or stainless steel. This is the first reported efficacy of methyl iodide in the reduction of Bacillus anthracis spore contamination at ambient and elevated temperatures.

  19. Antimicrobials of Bacillus species: mining and engineering

    NARCIS (Netherlands)

    Zhao, Xin

    2016-01-01

    Bacillus sp. have been successfully used to suppress various bacterial and fungal pathogens. Due to the wide availability of whole genome sequence data and the development of genome mining tools, novel antimicrobials are being discovered and updated,;not only bacteriocins, but also NRPs and PKs. A n

  20. MBE growth of entire-indium-composition-tunable InxGa1-xN alloy%全In组分可调InGaN的分子束外延生长

    Institute of Scientific and Technical Information of China (English)

    王新强; 王平; 刘世韬; 郑显通; 马定宇; 沈波

    2015-01-01

    Ⅲ族氮化物InxGa1-xN合金为直接带隙半导体,其禁带宽度随着In组分变化从3.43 eV (GaN)到0.64eV(InN)连续可调,波长范围覆盖了0.3-1.9 μm,具有电子饱和速度高和光学吸收系数大等特点,是制备高效率全光谱太阳能电池和白光照明器件的理想材料.由于缺少合适的衬底,InN和InxGa1-xN薄膜通常生长在蓝宝石或GaN模板上.本论文综述了采用MBE方法,在蓝宝石衬底和GaN模板上生长了InN和全组分InxGa1-xN薄膜的生长行为和材料物理性质.利用MBE边界温度控制法在蓝宝石衬底上生长高室温电子迁移率的InN薄膜,利用温度控制外延法在GaN/蓝宝石模板上制备了全组分InxGa1-xN薄膜.

  1. Bacillus endolithicus sp. nov., isolated from pebbles.

    Science.gov (United States)

    Parag, B; Sasikala, Ch; Ramana, Ch V

    2015-12-01

    Strain JC267T was isolated from pebbles collected from Pingleshwar beach, Gujarat, India. Cells are Gram-stain-positive, facultatively anaerobic, non-motile rods forming sub-terminal endospores in swollen ellipsoidal to oval sporangia. Strain JC267T contains anteiso-C15 : 0, iso-C15 : 0, iso-C14 : 0, iso-C16 : 0, C16 : 0 and anteiso-C17 : 0 as major (>5 %) cellular fatty acids. Polar lipids include phosphatidylglycerol, phospholipids (PL1-3), glycolipids (GL1-2) and an unidentified lipid. Cell-wall amino acids are composed of diagnostic meso-diaminopimelic acid, dl-alanine and a small amount of d-glutamic acid. The genomic DNA G+C content of strain JC267T is 45.5 mol%. The 16S rRNA gene sequence of strain JC267T showed highest sequence similarities of Bacillus when subjected to EzTaxon-e blast analysis. The reassociation values based on DNA-DNA hybridization of strain JC267T with Bacillus halosaccharovorans IBRC-M 10095T and Bacillus niabensis JCM 16399T were 26 ± 1 % and 34 ± 3 %, respectively. Based on taxonomic data obtained using a polyphasic approach, strain JC267T represents a novel species of the genus Bacillus, for which the name Bacillus endolithicus sp. nov. is proposed. The type strain is JC267T ( = IBRC-M 10914T = KCTC 33579T).

  2. 芽孢杆菌B3的鉴定及其对常见污染真菌的拮抗作用%Identification of Bacillus sp. B3 and its Antagonism against Contamina-tive Fungi

    Institute of Scientific and Technical Information of China (English)

    黄福常; 刘斌; 覃培升; 黎金锋; 吴浩

    2013-01-01

      从平菇废弃培养料中分离获得一株细菌B3,通过对其进行形态学、培养特征比较研究和16S rDNA序列分析,鉴定为解淀粉芽孢杆菌(Bacillus amyloliquefaciens).在与常见的三种食用菌污染真菌脉孢菌(Neur ospora sp.)、木霉(Trichoderma sp.)及鬼伞(Coprinus sp.)分别进行对峙培养时,都有明显的抑菌作用,形成的抑菌带分别为0.38 cm、0.57 cm及0.56 cm,而与平菇(Pleurotus ostreatus)、鸡腿菇(Coprinus comatus)及草菇(Volvariella volvacea)分别进行对峙培养时,除对草菇有明显的抑制作用外,对平菇和鸡腿菇的抑制作用很小.在混接B3菌株麸皮菌剂栽培料培养基上,B3菌株对三种污染真菌的抑制作用都很明显;可抑制木霉分生孢子形成、脉孢菌分生孢子萌发及鬼伞菌丝扩展;但不抑制平菇菌丝的生长.%The bacterial strain B3 was isolated from spend oyster mushroom substrate, it was identified as Bacill us amyloliquefaciens based on morphological and physiological characteristics and 16S rDNA analysis. The strain B3 showed high antagonistic activity against the common mushroom contaminative fungi such as Neurospora sp., Trichoderma sp. and Coprinus sp.. In dual plate assay, the inhibition zone was 0.38 cm, 0.57 cm and 0.56 cm, re-spectively. The strain B3 was also cultured in dual plate with Pleurotus ostreatus, Coprinus comatus and Volvariella volvacea, respectively. The strain B3 showed very low inhibition to Pleurotus ostreatus and Coprinus comatus, but it had significant inhibition to Volvariella volvacea. Strain B3 showed stronger inhibition to Neurospora sp., Trichod ermasp. and Coprinus sp. in the cottonseed husk substrate when inoculated with oyster mushroom. It could inhibit the conidia formation of Trichoderma sp., the spore germination of Neurospora sp. and the hyphal extension of Coprinus sp., but showed lower inhibition to oyster mushroom.

  3. Investigation of biosurfactant production by Bacillus pumilus 1529 and Bacillus subtilis WPI

    Directory of Open Access Journals (Sweden)

    shila khajavi shojaei

    2016-06-01

    Full Text Available Introduction: Biosurfactants are unique amphipathic molecules with extensive application in removing organic and metal contaminants. The purpose of this study was to investigate production of biosurfactant and determine optimal conditions to produce biosurfactant by Bacillus pumilus 1529 and Bacillus subtilis WPI. Materials and methods: In this study, effect of carbon source, temperature and incubation time on biosurfactant production was evaluated. Hemolytic activity, emulsification activity, oil spreading, drop collapse, cell hydrophobicity and measurement of surface tension were used to detect biosurfactant production. Then, according to the results, the optimal conditions for biosurfactant production by and Bacillus subtilis WPI was determined. Results: In this study, both bacteria were able to produce biosurfactant at an acceptable level. Glucose, kerosene, sugarcane molasses and phenanthrene used as a sole carbon source and energy for the mentioned bacteria. Bacillus subtilis WPI produced maximum biosurfactant in the medium containing kerosene and reduced surface tension of the medium to 33.1 mN/m after 156 hours of the cultivation at 37°C. Also, the highest surface tension reduction by Bacillus pumilus 1529 occurred in the medium containing sugarcane molasses and reduce the surface tension of culture medium after 156 hours at 37°C from 50.4 to 28.83 mN/m. Discussion and conclusion: Bacillus pumilus 1529 and Bacillus subtilis WPI had high potential in production of biosurfactant and degradation of petroleum hydrocarbons and Phenanthrene. Therefore, it could be said that these bacteria had a great potential for applications in bioremediation and other environmental process.

  4. Structural, magnetic and Mossbauer studies of TI doped Gd2Fe17-xTix and Gd2Fe16Ga1-xTix (0≤x≤1)

    Science.gov (United States)

    Pokharel, G.; Syed Ali, K. S.; Mishra, S. R.

    2015-05-01

    Magnetic compounds of the type Gd2Fe17-xTix and Gd2Fe16Ga1-xTix (x=0.0-1.0) were prepared by arc melting and their structural and magnetic properties were studied by X-ray diffraction (XRD), magnetometery and Mossbauer spectroscopy. The Rietveld analysis of X-ray data shows that these α-Fe free solid-solutions crystallize with Th2Ni17-type structure as main phase along with GdFe2 and TiFe2 as additional phases at higher, x≥0.5 contents. The unit cell volume expands with Ga and Ti content. The Rietveld analysis indicate that both Ti and Ga atoms prefer 12j and 12k sites in both compounds. The effect of Ti and co-substituted Ga-Ti on the bond length are quite different. The saturation magnetization Ms, at 300 K for Gd2Fe17-xTix and Gd2Fe16Ga1-xTix was found to decrease linearly with increasing Ti content. The Ms in both compounds at x=1 reduced by 9% as compared to their parent compounds at x=0. The Curie temperature, Tc, for Gd2Fe17-xTix increased from 513 K (x=0) to 544 K (x=1) while Tc for Gd2Fe16Ga1-xTix reduced from 560 (x=0) to 544 K (x=1) with increase in Ti content. Thus the observed variation in Tc follows Gd2Fe17variation in the unit cell volume of compounds which has direct effect on the strength of Fe-Fe exchange-interaction. The Mossbauer results indicate decrease in hyperfine fields and increase in the isomer shifts with the increase in Ti content. Overall co-substituted Ga-Ti, Gd2Fe16Ga1-xTix show high Tc with marginal decline in saturation magnetization. Thus α-Fe free Gd2Fe16Ga1-xTix compounds can be potential candidate for high temperature permanent magnet industrial applications.

  5. CO adsorption on PdGa(1 0 0), (1 1 1) and (1{sup ¯}1{sup ¯}1{sup ¯}) surfaces: A DFT study

    Energy Technology Data Exchange (ETDEWEB)

    Bechthold, P.; Ardhengi, J.S.; Juan, A., E-mail: cajuan@uns.edu.ar; González, E.A.; Jasen, P.V.

    2014-10-01

    Graphical abstract: - Highlights: • CO adsorption is top on Pd sites for all surfaces. • Our results agree with TDS peak at 210 K for PdGa (1{sup ¯}1{sup ¯}1{sup ¯}) attributed to CO-Pd bond. • Pd-CO bond is formed at expenses of metal-metal bond. No Ga-CO interaction is found. • A back-donation for all surfaces was detected. After adsorption Pd PDOS shift towards lower energies. • IR frequencies for the C-O adsorbed presents a red shift compared to gas phase. - Abstract: CO adsorption on (1 0 0), (1 1 1) and (1{sup ¯}1{sup ¯}1{sup ¯}) planes is analyzed using density functional theory (DFT) calculations. Changes in the electronic structure of these surfaces and CO bond after adsorption are also addressed here. CO is located on Pd atop geometry with a tilted configuration of 7.8° in the (1 0 0) plane, while in the (1 1 1) and (1{sup ¯}1{sup ¯}1{sup ¯}) are perpendicular to the surface. No direct interaction of CO with Ga is detected. The overlap population (OP) of Pd-Pd and Pd-Ga bond decreases as the new Pd-CO bond is formed. In all cases, the C-O bond length changes less than 1% compared to the vacuum but its strength decrease about 50% as determined by the changes in the OP. The effect of CO is limited to its first Pd neighbor. Analysis of orbital interaction reveals that Pd-CO bond mainly involves s-s and s-p orbitals with less participation of Pd 4d orbitals. Computed CO vibration frequencies after adsorption shows a red shift from vacuum towards 1972.9, 1990.4 and 1988.6 cm{sup −1} on (1 0 0), (1 1 1) and (1{sup ¯}1{sup ¯}1{sup ¯}) planes respectively, following the same trend that experimental data on the PdGa intermetallic compound.

  6. Propriétés structurales et optiques de nanostructures III-N semiconductrices à grand gap : nanofils d'AlxGa1-xN synthétisés par épitaxie par jets moléculaires et nanostructures de nitrure de bore.

    OpenAIRE

    2013-01-01

    This work focuses on structural and optical properties of III-nitrides wide-band gap semiconductors (AlxGa1-xN et h-BN), emitting in the ultraviolet range (4-6 eV). Nano-objects properties being modified by dimensional reduction, this work was mostly focused on the study of nanostructures of these materials (AlN and AlxGa1-xN nanowires, BN nanotubes and nanosheets). Careful search for correlation between their structure and luminescence has also been carried out. Concerning AlxGa1-xN material...

  7. Genetic diversity among Bacillus anthracis, Bacillus cereus and Bacillus thuringiensis strains using repetitive element polymorphism-PCR.

    Science.gov (United States)

    Brumlik, Michael J; Bielawska-Drózd, Agata; Zakowska, Dorota; Liang, Xudong; Spalletta, Ronald A; Patra, Guy; Delvecchio, Vito G

    2004-01-01

    Repetitive element polymorphism-PCR (REP-PCR) is one of the tools that has been used to elucidate genetic diversity of related microorganisms. Using the MB1 primer, REP-PCR fingerprints from 110 Bacillus strains within the "B. cereus group" have identified eighteen distinct categories, while other more distantly related bacterial species fell within six additional categories. All Bacillus anthracis strains tested were found to be monomorphic by fluorophore-enhanced REP-PCR (FERP) fingerprinting using the MB1 primer. In contrast, other non- B. anthracis isolates displayed a high degree of polymorphism. Dendrogramic analysis revealed that the non- B. anthracis strains possessing the Ba813 chromosomal marker were divided into two clusters. One of the clusters shared identity with the B. cereus strains examined.

  8. 75 FR 16113 - Bacillus subtilis; Registration Review Final Decision; Notice of Availability

    Science.gov (United States)

    2010-03-31

    ... AGENCY Bacillus subtilis; Registration Review Final Decision; Notice of Availability AGENCY... final registration review decision for the pesticide Bacillus subtilis, case 6012. Registration review... availability of EPA's final registration review decision for Bacillus subtilis, case 6012. The...

  9. GaAs/AlxGa1-xAs超晶格束缚态电子能级结构的理论研究%Theoretical Study of Bound State Electronic Energy Level Structure in GaAs/AlxGa1-x As Superlattice

    Institute of Scientific and Technical Information of China (English)

    李文兵

    2006-01-01

    我们运用Kronig-Penney模型,研究了GaAs/AlxGa1-xAs超晶格的束缚态电子能级结构、带宽,跃迁矩随超晶格的结构参量(阱宽、垒宽和Al组分)变化关系,以及子带能量色散关系.计算结果表明:影响光跃迁频率的最大因素是阱宽,随着阱宽的增加,光跃迁频率逐渐减小;影响带宽的较大因素是垒宽,随垒宽的增大,带宽逐渐减小;超晶格结构参量对跃迁矩的影响很小;随着Al组分的增加,光跃迁频率逐渐增大;第一子能带随波矢的变化不是很明显,第二子能带随波矢变化比较明显.这些将对实验测量和器件应用有一定的参考价值和指导意义.

  10. Inactivation of Bacillus Anthracis Spores Using Carbon Nanotubes

    Science.gov (United States)

    2014-10-30

    2010 31-May-2014 Approved for Public Release; Distribution Unlimited Final Report: (Life Science Division/Biochemistry) Inactivation of Bacillus ...S) AND ADDRESS (ES) U.S. Army Research Office P.O. Box 12211 Research Triangle Park, NC 27709-2211 Bacillus Anthracis, Spores, Biofilm, Inhibition...Biochemistry) Inactivation of Bacillus Anthracis Spores Using Carbon Nanotubes Report Title The Specific Aims of the project were to investigate: 1) the

  11. Transport of Bacillus thuringiensis var. Kurstaki Via Fomites

    Science.gov (United States)

    2011-01-01

    Special Feature: Remediation Transport of Bacillus Thuringiensis var. Kurstaki Via Fomites Sheila Van Cuyk, Lee Ann B. Veal, Beverley Simpson, and...evaluate biodefense concepts of operations using routine spraying of Bacillus thuringiensis var. kurstaki (Btk). Btk is dispersed in large quantities as...used is a water-based slurry containing Bacillus thuringiensis var. kurstaki (Btk). This bacterium produces a toxin that is lethal to gypsy moth

  12. In vitro susceptibility of Bacillus spp. to selected antimicrobial agents.

    OpenAIRE

    1988-01-01

    Although often dismissed as contaminants when isolated from blood cultures, Bacillus spp. are increasingly recognized as capable of causing serious systemic infections. As part of a clinical-microbiological study, 89 strains of Bacillus spp. isolated from clinical blood cultures between 1981 and 1985 had their species determined and were tested for antimicrobial agent susceptibility to 18 antibiotics. Species of isolates were determined by the API 50CH and API 20E systems. Bacillus cereus (54...

  13. Bacillus caldolyticus prs gene encoding phosphoribosyldiphosphate synthase

    DEFF Research Database (Denmark)

    Krath, Britta N.; Hove-Jensen, Bjarne

    1996-01-01

    The prs gene, encoding phosphoribosyl-diphosphate (PRPP) synthase, as well as the flanking DNA sequences were cloned and sequenced from the Gram-positive thermophile, Bacillus caldolyticus. Comparison with the homologous sequences from the mesophile, Bacillus subtilis, revealed a gene (gca......D) encoding N-acetylglucosamine-l-phosphate uridyltransferase upstream of prs, and a gene homologous to ctc downstream of prs. cDNA synthesis with a B. caldolyticus gcaD-prs-ctc-specified mRNA as template, followed by amplification utilising the polymerase chain reaction indicated that the three genes are co......-transcribed. Comparison of amino acid sequences revealed a high similarity among PRPP synthases across a wide phylogenetic range. An E. coli strain harbouring the B. caldolyticus prs gene in a multicopy plasmid produced PRPP synthase activity 33-fold over the activity of a haploid B. caldolyticus strain. B. caldolyticus...

  14. Mutations determining mitomycin resistance in Bacillus subtilis.

    Science.gov (United States)

    Iyer, V N

    1966-12-01

    Iyer, V. N. (Microbiology Research Institute, Canada Department of Agriculture, Ottawa, Canada). Mutations determining mitomycin resistance in Bacillus subtilis. J. Bacteriol. 92:1663-1669. 1966.-The pattern of development of genetic resistance in Bacillus subtilis to mitomycin C was studied, and spontaneous single and multistep mutants were obtained. The transmission and expression of these mutations in sensitive strains proved possible by means of genetic transformation. The mutations were genetically studied in relation to a chromosomal mutation, mac-1, which confers resistance to the macrolide antibiotic erythromycin and which has been previously localized in the early-replicating segment of the B. subtilis chromosome. The results indicate that all of three primary mutations studied in this manner, as well as a secondary and tertiary mutation derived from one of the primary mutations, are clustered in this early-replicating segment. It appears that the secondary and tertiary mutations enhance the resistance conferred by the primary mutation, apparently without themselves conferring any resistance.

  15. Bacillus thuringiensis crystal proteins that target nematodes

    OpenAIRE

    Wei, Jun-Zhi; Hale, Kristina; Carta, Lynn; Platzer, Edward; Wong, Cynthie; Fang, Su-Chiung; Aroian, Raffi V.

    2003-01-01

    Bacillus thuringiensis (Bt) crystal proteins are pore-forming toxins used as insecticides around the world. Previously, the extent to which these proteins might also target the invertebrate phylum Nematoda has been mostly ignored. We have expressed seven different crystal toxin proteins from two largely unstudied Bt crystal protein subfamilies. By assaying their toxicity on diverse free-living nematode species, we demonstrate that four of these crystal proteins are active against multiple nem...

  16. Bacillus thuringiensis and Its Pesticidal Crystal Proteins

    OpenAIRE

    Schnepf, E.; Crickmore, N; Van Rie, J.; Lereclus, D.; Baum, J; Feitelson, J.; Zeigler, D. R.; Dean, D H

    1998-01-01

    During the past decade the pesticidal bacterium Bacillus thuringiensis has been the subject of intensive research. These efforts have yielded considerable data about the complex relationships between the structure, mechanism of action, and genetics of the organism’s pesticidal crystal proteins, and a coherent picture of these relationships is beginning to emerge. Other studies have focused on the ecological role of the B. thuringiensis crystal proteins, their performance in agricultural and o...

  17. BACILLUS THURINGIENSIS ELASTASES WITH INSECTICIDE ACTIVITY

    OpenAIRE

    E. V. Matseliukh; N. A. Nidialkova; V. V. Krout'; L. D. Varbanets; A. V. Kalinichenko; V. F. Patyka

    2015-01-01

    The purpose of the research was a screening of proteases with elastase activity among Bacillus thuringiensis strains, their isolation, partially purification, study of physicochemical properties and insecticide activity in relation to the larvae of the Colorado beetle. The objects of the investigation were 18 strains of B. thuringiensis, isolated from different sources: sea water, dry biological product "Bitoksibatsillin" and also from natural populations of Colorado beetles of the Crimea, Kh...

  18. Pseudomembranous tracheobronchitis due to Bacillus cereus.

    Science.gov (United States)

    Strauss, R; Mueller, A; Wehler, M; Neureiter, D; Fischer, E; Gramatzki, M; Hahn, E G

    2001-09-01

    We present a case of a rapidly progressive pseudomembranous tracheobronchitis and pneumonia in a 52-year-old woman with severe aplastic anemia. Bacillus cereus was isolated from bronchoalveolar lavage fluids, blood cultures, and pseudomembrane biopsy specimens; despite intensive antibiotic treatment, the patient's condition deteriorated rapidly. To our knowledge, this is the first report of a B. cereus infection that has caused pseudomembranous tracheobronchitis, possibly because of the production of bacterial toxins.

  19. Bacillus cereus Biofilms—Same, Only Different

    Science.gov (United States)

    Majed, Racha; Faille, Christine; Kallassy, Mireille; Gohar, Michel

    2016-01-01

    Bacillus cereus displays a high diversity of lifestyles and ecological niches and include beneficial as well as pathogenic strains. These strains are widespread in the environment, are found on inert as well as on living surfaces and contaminate persistently the production lines of the food industry. Biofilms are suspected to play a key role in this ubiquitous distribution and in this persistency. Indeed, B. cereus produces a variety of biofilms which differ in their architecture and mechanism of formation, possibly reflecting an adaptation to various environments. Depending on the strain, B. cereus has the ability to grow as immersed or floating biofilms, and to secrete within the biofilm a vast array of metabolites, surfactants, bacteriocins, enzymes, and toxins, all compounds susceptible to act on the biofilm itself and/or on its environment. Within the biofilm, B. cereus exists in different physiological states and is able to generate highly resistant and adhesive spores, which themselves will increase the resistance of the bacterium to antimicrobials or to cleaning procedures. Current researches show that, despite similarities with the regulation processes and effector molecules involved in the initiation and maturation of the extensively studied Bacillus subtilis biofilm, important differences exists between the two species. The present review summarizes the up to date knowledge on biofilms produced by B. cereus and by two closely related pathogens, Bacillus thuringiensis and Bacillus anthracis. Economic issues caused by B. cereus biofilms and management strategies implemented to control these biofilms are included in this review, which also discuss the ecological and functional roles of biofilms in the lifecycle of these bacterial species and explore future developments in this important research area. PMID:27458448

  20. Disinfection of Vegetative Cells of Bacillus anthracis

    Science.gov (United States)

    2016-03-01

    and the fate of vegetative cells resulting from augmented germination . In this study, data were generated on the inactivation of vegetative B...all the dilutions. First, a solution of 1000 mg chlorine solution was prepared in two steps . Sodium hypochlorite solution was diluted 1:5, and then 1... Germinant -Enhanced Decontamination of Bacillus Spores Adhered to Iron and Cement-Mortar Drinking Water Infrastructures. Appl. Environ. Microbiol. 2012, 78

  1. Complete Genomes of Bacillus coagulans S-lac and Bacillus subtilis TO-A JPC, Two Phylogenetically Distinct Probiotics.

    Directory of Open Access Journals (Sweden)

    Indu Khatri

    Full Text Available Several spore-forming strains of Bacillus are marketed as probiotics due to their ability to survive harsh gastrointestinal conditions and confer health benefits to the host. We report the complete genomes of two commercially available probiotics, Bacillus coagulans S-lac and Bacillus subtilis TO-A JPC, and compare them with the genomes of other Bacillus and Lactobacillus. The taxonomic position of both organisms was established with a maximum-likelihood tree based on twenty six housekeeping proteins. Analysis of all probiotic strains of Bacillus and Lactobacillus reveal that the essential sporulation proteins are conserved in all Bacillus probiotic strains while they are absent in Lactobacillus spp. We identified various antibiotic resistance, stress-related, and adhesion-related domains in these organisms, which likely provide support in exerting probiotic action by enabling adhesion to host epithelial cells and survival during antibiotic treatment and harsh conditions.

  2. Complete Genomes of Bacillus coagulans S-lac and Bacillus subtilis TO-A JPC, Two Phylogenetically Distinct Probiotics.

    Science.gov (United States)

    Khatri, Indu; Sharma, Shailza; Ramya, T N C; Subramanian, Srikrishna

    2016-01-01

    Several spore-forming strains of Bacillus are marketed as probiotics due to their ability to survive harsh gastrointestinal conditions and confer health benefits to the host. We report the complete genomes of two commercially available probiotics, Bacillus coagulans S-lac and Bacillus subtilis TO-A JPC, and compare them with the genomes of other Bacillus and Lactobacillus. The taxonomic position of both organisms was established with a maximum-likelihood tree based on twenty six housekeeping proteins. Analysis of all probiotic strains of Bacillus and Lactobacillus reveal that the essential sporulation proteins are conserved in all Bacillus probiotic strains while they are absent in Lactobacillus spp. We identified various antibiotic resistance, stress-related, and adhesion-related domains in these organisms, which likely provide support in exerting probiotic action by enabling adhesion to host epithelial cells and survival during antibiotic treatment and harsh conditions.

  3. Meningitis and bacteremia due to Bacillus cereus. A case report and a review of Bacillus infections.

    Science.gov (United States)

    Siegman-Igra, Y; Lavochkin, J; Schwartz, D; Konforti, N

    1983-06-01

    A patient with meningitis and bacteremia due to Bacillus cereus is described. The patient had transsphenoidal hypophysectomy for chromophobe adenoma, complicated by rhinorrhea, which was corrected by subarachnoid drainage. Three weeks after removal of the drain, the patient presented with meningitis and died the following day. The causative organism was identified as B. cereus. The literature on Bacillus infections is reviewed with special attention to severe infections. A modified classification is proposed, dividing infections into superficial, closed-space and systemic ones. Sixty-one previously reported cases of systemic Bacillus infections are reviewed according to type of infection (endocarditis, meningitis or pulmonary infection), and the underlying conditions, ways of acquiring the infection, clinical picture and mortality are discussed.

  4. Bioaccumulation of copper, zinc, cadmium and lead by Bacillus sp., Bacillus cereus, Bacillus sphaericus and Bacillus subtilis Bioacumulação de cobre, zinco, cádmio e chumbo por Bacillus sp., Bacillus cereus, Bacillus sphaericus e Bacillus subtilis

    Directory of Open Access Journals (Sweden)

    Antonio Carlos Augusto da Costa

    2001-03-01

    Full Text Available This work presents some results on the use of microbes from the genus Bacillus for uptake of cadmium, zinc, copper and lead ions. Maximum copper bioaccumulations were 5.6 mol/g biomass for B. sphaericus, 5.9 mol/g biomass for B. cereus and B. subtilis, and 6.4 mol/g biomass for Bacillus sp. Maximum zinc bioaccumulations were 4.3 mol/g biomass for B. sphaericus, 4.6 mol/g biomass for B. cereus, 4.8 mol/g biomass for Bacillus sp. and 5.0 mol/g biomass for B. subtilis. Maximum cadmium bioaccumulations were 8.0 mol/g biomass for B. cereus, 9.5 mol/g biomass for B. subtilis, 10.8 mol/g biomass for Bacillus sp. and 11.8 mol/g biomass for B. sphaericus. Maximum lead biomaccumulations were 0.7 mol/g biomass for B. sphaericus, 1.1 mol/g biomass for B. cereus, 1.4 mol/g biomass for Bacillus sp. and 1.8 mol/g biomass for B. subtilis. The different Bacillus strains tested presented distinct uptake capacities, and the best results were obtained for B. subtilis and B. cereus.Este trabalho apresenta resultados de acumulação dos íons metálicos cádmio, zinco, cobre e chumbo por bactérias do gênero Bacillus. A bioacumulação máxima de cobre foi 5,6 mol/g biomassa para B. sphaericus, 5,9 mol/g biomassa para B. cereus e B. subtilis, e 6,4 mol/g biomassa para Bacillus sp.. A bioacumulação máxima de zinco foi 4,3 mol/g biomassa para B. sphaericus, 4,6 mol/g biomassa para B. cereus, 4,8 mol/g biomassa para Bacillus sp. e 5,0 mol/g biomassa para B. subtilis. A bioacumulação máxima de cádmio foi 8,0 mol/g biomassa para B. cereus, 9,5 mol/g biomassa para B. subtilis, 10,8 mol/g biomassa para Bacillus sp. e 11,8 mol/g biomassa para B. sphaericus. A bioacumulação máxima de chumbo foi 0,7 mol/g biomassa para B. sphaericus, 1,1 mol/g biomassa para B. cereus, 1,4 mol/g biomassa para Bacillus sp. e 1,8 mol/g biomassa para B. subtilis. As distintas linhagens de Bacillus testadas apresentaram variáveis capacidades de carregamento de íons metálicos, sendo os

  5. BACILLUS CEREUS: ISOLATION IN JENNET MILK

    Directory of Open Access Journals (Sweden)

    M.L. Scatassa

    2011-01-01

    Full Text Available Jennet milk as human food is hypoallergenic for patients affected by Cow Milk Protein Allergy and multiple food allergies. For these pathologies, jennet milk represents the best alternative to other types of milk. Therefore, jennet milk consumers are very sensible to the effects of pathogens' contaminations, and several hygienic practices during the milk production need to be adopted. During regular monitoring in one Sicilian jennet farm, Bacillus cereus in the milk was detected. In 3 bulk milk samples (maximum concentration: 1.2 x 103 ufc/ml, in 3 individual milk samples (10, 20 e 60 ufc/ml, in the milk filter (5 ufc/cm2, in the soil (maximum concentration: 1.5 x 103 ufc/g, on the hands and the gloves of two milkers, on the animal hide (from 1 to 3 ufc/cm2. No spores were detected. A total of 8 Bacillus cereus s.s. strains were analyzed for diarrhoic toxin, and 6 strains producing enterotoxins resulted. The improvement of environmental and milking hygienic conditions reduced Bacillus cereus concentration.

  6. Occurrence and significance of Bacillus cereus and Bacillus thuringiensis in ready-to-eat food

    DEFF Research Database (Denmark)

    Rosenquist, Hanne; Ørum-Smidt, Lasse; Andersen, Sigrid R

    2005-01-01

    Among 48,901 samples of ready-to-eat food products at the Danish retail market, 0.5% had counts of Bacillus cereus-like bacteria above 10(4) cfu g(-1). The high counts were most frequently found in starchy, cooked products, but also in fresh cucumbers and tomatoes. Forty randomly selected strains...... had at least one gene or component involved in human diarrhoeal disease, while emetic toxin was related to only one B. cereus strain. A new observation was that 31 out of the 40 randomly selected B. cereus-like strains could be classified as Bacillus thuringiensis due to crystal production and...

  7. Bacillus luteus sp. nov., isolated from soil.

    Science.gov (United States)

    Subhash, Y; Sasikala, Ch; Ramana, Ch V

    2014-05-01

    Two bacterial strains (JC167T and JC168) were isolated from a soil sample collected from Mandpam, Tamilnadu, India. Colonies of both strains were orange and cells Gram-stain-positive. Cells were small rods, and formed terminal endospores of ellipsoidal to oval shape. Both strains were positive for catalase, oxidase and hydrolysis of starch/gelatin, and negative for chitin hydrolysis, H2S production, indole production and nitrate reduction activity. Major fatty acids of both strains (>5%) were anteiso-C15:0, iso-C16:0, iso-C15:0, anteiso-C17:0, iso-C14:0 and C16:0 with minor (1%) amounts of iso-C17:0, anteiso-C17:0 B/iso-C17:0 I and C16:1ω11c. Diphosphatydilglycerol, phosphatidylethanolamine and phosphatidylglycerol were the major polar lipids of both strains. Cell wall amino acids were L-alanine, D-alanine, D-glutamic acid and meso-diaminopimelic acid. β-Carotene and five unidentified carotenoids were present in both strains. Mean genomic DNA G+C content was 53.4±1 mol% and the two strains were closely related (mean DNA-DNA hybridization>90%). 16S rRNA gene sequence comparisons of both strains indicated that they represent species of the genus Bacillus within the family Bacillaceae of the phylum Firmicutes. Both strains had a sequence similarity of 97.6% with Bacillus saliphilus 6AGT and Bacillus. Sequence similarity between strain JC167T and 168 was 100%. Strain JC167T showed 25.8±1% reassociation (based on DNA-DNA hybridization) with B. saliphilus DSM 15402T (=6AGT). Distinct morphological, physiological and genotypic differences from previously described taxa support the classification of strain JC167T as a representative of a novel species of the genus Bacillus, for which the name Bacillus luteus sp. nov. is proposed. The type strain is JC167T (=KCTC 33100T=LMG 27257T).

  8. A Model Describing the Band Gap Energy of the Strained In x Ga1- x N y Sb z As1- y- z Alloy (0 < x ≤ 0.5, 0 < y ≤ 0.05, 0 < z ≤ 0.1)

    Science.gov (United States)

    Zhao, Chuan-Zhen; Fu, Qiang; Wei, Tong; Wang, Sha-Sha; Lu, Ke-Qing

    2017-03-01

    The physical mechanism for the band gap evolution of the strained In x Ga1- x N y Sb z As1- y- z alloy is investigated. It is found that In x Ga1- x N y Sb z As1- y- z alloy with small N and Sb contents can be considered as an alloy formed by adding N and Sb atoms in the host material In x Ga1- x As. Under this condition, the band gap evolution of In x Ga1- x N y Sb z As1- y- z is due to three factors. One is the intraband coupling interactions within the conduction band and separately within the valence band of the host material, another is the coupling interaction between the Sb level and the D valence band maximum of the host material, and the other is the coupling interaction between the N level and the D conduction band minimum of the host material. Based on the physical mechanism for the band gap evolution of In x Ga1- x N y Sb z As1- y- z , a model is developed. The model can describe the band gap energy of the strained In x Ga1- x N y Sb z As1- y- z alloy well.

  9. Segregação de índio em cristais Ga1-xInxSb dopados com telúrio obtidos pelo método Bridgman vertical

    OpenAIRE

    2016-01-01

    Os compostos semicondutores ternários, dentre eles o Ga1-xInxSb, têm sido objeto de interesse de pesquisadores e da indústria microeletrônica devido à possibilidade de ajuste da constante de rede, assim como a correspondente modificação da banda proibida de energia e do intervalo de emissão e absorção óptica, com a variação da fração molar de x. A flexibilidade destas propriedades estruturais torna este composto apropriado como substratos para epitaxias de outros compostos ternários e quatern...

  10. Role of fatty acids in Bacillus environmental adaptation

    Directory of Open Access Journals (Sweden)

    Sara Esther Diomande

    2015-08-01

    Full Text Available The large bacterial genus genus Bacillus is widely distributed in the environment and is able to colonize highly diverse niches. Some Bacillus species harbour pathogenic characteristics. The fatty acid (FA composition is among the essential criteria used to define Bacillus species. Some elements of the FA pattern composition are common to Bacillus species, whereas others are specific and can be categorized in relation to the ecological niches of the species. Bacillus species are able to modify their FA patterns to adapt to a wide range of environmental changes, including changes in the growth medium, temperature, food processing conditions, and pH. Like many other Gram-positive bacteria, Bacillus strains display a well-defined FA synthesis II system that is equilibrated with a FA degradation pathway and regulated to efficiently respond to the needs of the cell. Like endogenous FAs, exogenous FAs may positively or negatively affect the survival of Bacillus vegetative cells and the spore germination ability in a given environment. Some of these exogenous FAs may provide a powerful strategy for preserving food against contamination by the Bacillus pathogenic strains responsible for foodborne illness.

  11. Transformation of undomesticated strains of Bacillus subtilis by protoplast electroporation.

    Science.gov (United States)

    Romero, Diego; Pérez-García, Alejandro; Veening, Jan-Willem; de Vicente, Antonio; Kuipers, Oscar P

    2006-09-01

    A rapid method combining the use of protoplasts and electroporation was developed to transform recalcitrant wild strains of Bacillus subtilis. The method described here allows transformation with both replicative and integrative plasmids, as well as with chromosomal DNA, and provides a valuable tool for molecular genetic analysis of interesting Bacillus strains, which are hard to transform by conventional methods.

  12. Intractable Bacillus cereus bacteremia in a preterm neonate.

    Science.gov (United States)

    John, Anna B; Razak, Eissa A S A; Razak, Emad E M H; Al-Naqeeb, Niran; Dhar, Rita

    2007-04-01

    Although often regarded as a contaminant, Bacillus spp. have been implicated in serious systemic infections. The incidence of such infections is low with only a few cases reported in the literature. We describe the clinical course of early-onset Bacillus cereus bacteremia in a preterm neonate who was successfully treated with vancomycin.

  13. Dendritic Cells Endocytose Bacillus Anthracis Spores: Implications for Anthrax Pathogenesis

    Science.gov (United States)

    2007-11-02

    Dendritic Cells Endocytose Bacillus anthracis Spores: Implications for Anthrax Pathogenesis1 Katherine C. Brittingham,* Gordon Ruthel,* Rekha G...germination and dissemination of spores. Found in high frequency throughout the respiratory track, dendritic cells (DCs) routinely take up foreign...COVERED - 4. TITLE AND SUBTITLE Dendritic cells endocytose Bacillus anthracis spores: implications for anthrax pathogenesis, The Journal of

  14. Complete Genome Sequence of Bacillus thuringiensis Bacteriophage Smudge.

    Science.gov (United States)

    Cornell, Jessica L; Breslin, Eileen; Schuhmacher, Zachary; Himelright, Madison; Berluti, Cassandra; Boyd, Charles; Carson, Rachel; Del Gallo, Elle; Giessler, Caris; Gilliam, Benjamin; Heatherly, Catherine; Nevin, Julius; Nguyen, Bryan; Nguyen, Justin; Parada, Jocelyn; Sutterfield, Blake; Tukruni, Muruj; Temple, Louise

    2016-08-18

    Smudge, a bacteriophage enriched from soil using Bacillus thuringiensis DSM-350 as the host, had its complete genome sequenced. Smudge is a myovirus with a genome consisting of 292 genes and was identified as belonging to the C1 cluster of Bacillus phages.

  15. Complete Genome Sequence of Bacillus megaterium Siphophage Silence

    OpenAIRE

    Solis, Jonathan A.; Farmer, Nicholas G.; Cahill, Jesse L.; Rasche, Eric S.; Kuty Everett, Gabriel F.

    2015-01-01

    Silence is a newly isolated siphophage that infects Bacillus megaterium, a soil bacterium that is used readily in research and commercial applications. A study of B. megaterium phage Silence will enhance our knowledge of the diversity of Bacillus phages. Here, we describe the complete genome sequence and annotated features of Silence.

  16. Draft Genome Sequence of Bacillus tequilensis Strain FJAT-14262a

    OpenAIRE

    Chen, Qian-Qian; Liu, Bo; Liu, Guo-hong; Wang, Jie-ping; Che, Jian-Mei

    2015-01-01

    Bacillus tequilensis FJAT-14262a is a Gram-positive rod-shaped bacterium. Here, we report the 4,038,551-bp genome sequence of B. tequilensis FJAT-14262a, which will provide useful information for genomic taxonomy and phylogenomics of Bacillus.

  17. Draft Genome Sequence of Bacillus tequilensis Strain FJAT-14262a.

    Science.gov (United States)

    Chen, Qian-Qian; Liu, Bo; Liu, Guo-Hong; Wang, Jie-Ping; Che, Jian-Mei

    2015-11-12

    Bacillus tequilensis FJAT-14262a is a Gram-positive rod-shaped bacterium. Here, we report the 4,038,551-bp genome sequence of B. tequilensis FJAT-14262a, which will provide useful information for genomic taxonomy and phylogenomics of Bacillus.

  18. Non-peptide metabolites from the genus Bacillus.

    Science.gov (United States)

    Hamdache, Ahlem; Lamarti, Ahmed; Aleu, Josefina; Collado, Isidro G

    2011-04-25

    Bacillus species produce a number of non-peptide metabolites that display a broad spectrum of activity and structurally diverse bioactive chemical structures. Biosynthetic, biological, and structural studies of these metabolites isolated from Bacillus species are reviewed. This contribution also includes a detailed study of the activity of the metabolites described, especially their role in biological control mechanisms.

  19. Quantitative immunofluorescence studies of the serology of Bacillus anthracis spores.

    OpenAIRE

    1983-01-01

    A fluorescein-conjugated antibody against formalin-inactivated spores of Bacillus anthracis Vollum reacted only weakly with a variety of Bacillus species in microfluorometric immunofluorescence assays. A conjugated antibody against spores of B. anthracis Sterne showed little affinity for spores of several B. anthracis isolates including B. anthracis Vollum, indicating that more than one anthrax spore serotype exists.

  20. Emetic toxin-producing strains of Bacillus cereus show distinct characteristics within the Bacillus cereus group.

    NARCIS (Netherlands)

    Carlin, Frédéric; Fricker, Martina; Pielaat, Annemarie; Heisterkamp, Simon; Shaheen, Ranad; Salonen, Mirja Salkinoja; Svensson, Birgitta; Nguyen-the, Christophe; Ehling-Schulz, Monika

    2006-01-01

    One hundred representative strains of Bacillus cereus were selected from a total collection of 372 B. cereus strains using two typing methods (RAPD and FT-IR) to investigate if emetic toxin-producing hazardous B. cereus strains possess characteristic growth and heat resistance profiles. The strains

  1. Bacillus oryzisoli sp. nov., isolated from rice rhizosphere.

    Science.gov (United States)

    Zhang, Xiao-Xia; Gao, Ju-Sheng; Zhang, Lei; Zhang, Cai-Wen; Ma, Xiao-Tong; Zhang, Jun

    2016-09-01

    The taxonomy of strain 1DS3-10T, a Gram-staining-positive, endospore-forming bacterium isolated from rice rhizosphere, was investigated using a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequences demonstrated that the novel strain was grouped with established members of the genus Bacillus and appeared to be closely related to the type strains Bacillus benzoevorans DSM 5391T (97.9 %), Bacillus circulans DSM 11T (97.7 %), Bacillus novalis JCM 21709T (97.3 %), Bacillus soli JCM 21710T (97.3 %), Bacillus oceanisediminis CGMCC 1.10115T (97.3 %) and BacillusnealsoniiFO-92T (97.1 %). The fatty acid profile of strain 1DS3-10T, which showed a predominance of iso-C15 : 0 and anteiso-C15 : 0, supported the allocation of the strain to the genus Bacillus. The predominant menaquinone was MK-7 (100 %). The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol and unknown aminolipids. Cell-wall peptidoglycan contained meso-diaminopimelic acid. DNA-DNA hybridization values between strain 1DS3-10T and the type strains of closely related species were 25-33 %, which supported that 1DS3-10T represented a novel species in the genus Bacillus. The results of some physiological and biochemical tests also allowed the phenotypic differentiation of strain 1DS3-10T from the most closely related recognized species. On the basis of the phylogenetic and phenotypic evidence, strain 1DS3-10T represents a novel species of the genus Bacillus, for which the name Bacillus oryzisoli sp. nov. is proposed. The type strain of the novel species is 1DS3-10T (=ACCC 19781T=DSM 29761T).

  2. Occurrence of natural Bacillus thuringiensis contaminants and residues of Bacillus thuringiensis-based insecticides on fresh fruits and vegetables

    DEFF Research Database (Denmark)

    Frederiksen, Kristine; Rosenquist, Hanne; Jørgensen, Kirsten

    2006-01-01

    A total of 128 Bacillus cereus-like strains isolated from fresh fruits and vegetables for sale in retail shops in Denmark were characterized. Of these strains, 39% (50/128) were classified as Bacillus thuringiensis on the basis of their content of cry genes determined by PCR or crystal proteins...

  3. Enhanced transformation efficiency of recalcitrant Bacillus cereus and Bacillus weihenstephanensis isolates upon in vitro methylation of plasmid DNA

    NARCIS (Netherlands)

    Nierop Groot, M.N.; Nieboer, F.; Abee, T.

    2008-01-01

    Digestion patterns of chromosomal DNAs of Bacillus cereus and Bacillus weihenstephanensis strains suggest that Sau3AI-type restriction modification systems are widely present among the isolates tested. In vitro methylation of plasmid DNA was used to enhance poor plasmid transfer upon electroporation

  4. Novel cloning vectors for Bacillus thuringiensis.

    OpenAIRE

    Baum, J A; Coyle, D M; Gilbert, M P; Jany, C S; Gawron-Burke, C

    1990-01-01

    Seven replication origins from resident plasmids of Bacillus thuringienis subsp. kurstaki HD263 and HD73 were cloned in Escherichia coli. Three of these replication origins, originating from plasmids of 43, 44, and 60 MDa, were used to construct a set of compatible shuttle vectors that exhibit structural and segregational stability in the Cry- strain B. thuringiensis HD73-26. These shuttle vectors, pEG597, pEG853, and pEG854, were designed with rare restriction sites that permit various adapt...

  5. Regulation of protoxin synthesis in Bacillus thuringiensis.

    OpenAIRE

    Minnich, S A; Aronson, A I

    1984-01-01

    A derivative of Bacillus thuringiensis subsp. kurstaki (HD-1) formed parasporal inclusions at 25 degrees C, but not at 32 degrees C. This strain differed from the parent only in the loss of a 110-megadalton (Md) plasmid, but plasmid and chromosomal copies of protoxin genes were present in both strains. On the basis of temperature shift experiments, the sensitive period appeared to be during midexponential growth, long before the time of protoxin synthesis at 3 to 4 h after the end of exponent...

  6. Features of Bacillus cereus swarm cells.

    Science.gov (United States)

    Senesi, Sonia; Salvetti, Sara; Celandroni, Francesco; Ghelardi, Emilia

    2010-11-01

    When propagated on solid surfaces, Bacillus cereus can produce differentiated swarm cells under a wide range of growth conditions. This behavioural versatility is ecologically relevant, since it allows this bacterium to adapt swarming to environmental changes. Swarming by B. cereus is medically important: swarm cells are more virulent and particularly prone to invade host tissues. Characterisation of swarming-deficient mutants highlights that flagellar genes as well as genes governing different metabolic pathways are involved in swarm-cell differentiation. In this review, the environmental and genetic requirements for swarming and the role played by swarm cells in the virulence this pathogen exerts will be outlined.

  7. Bacillus anthracis factors for phagosomal escape.

    Science.gov (United States)

    Tonello, Fiorella; Zornetta, Irene

    2012-07-01

    The mechanism of phagosome escape by intracellular pathogens is an important step in the infectious cycle. During the establishment of anthrax, Bacillus anthracis undergoes a transient intracellular phase in which spores are engulfed by local phagocytes. Spores germinate inside phagosomes and grow to vegetative bacilli, which emerge from their resident intracellular compartments, replicate and eventually exit from the plasma membrane. During germination, B. anthracis secretes multiple factors that can help its resistance to the phagocytes. Here the possible role of B. anthracis toxins, phospholipases, antioxidant enzymes and capsules in the phagosomal escape and survival, is analyzed and compared with that of factors of other microbial pathogens involved in the same type of process.

  8. Bacillus crescens sp. nov., isolated from soil.

    Science.gov (United States)

    Shivani, Y; Subhash, Y; Dave Bharti, P; Sasikala, Ch; Ramana, Ch V

    2015-08-01

    Two bacterial strains (JC247T and JC248) were isolated from soil samples collected from Rann of Kutch, Gujarat, India. Colonies of both strains were creamy white. Cells were Gram-stain-positive, rods-to-curved rods (crescent-shaped), and produced centrally located oval-shaped endospores. Major (>5 %) fatty acids of both strains were iso-C16  :  0, iso-C14  :  0, iso-C15  :  0, C16  :  1ω11c and C16  :  0, with minor ( 1 %) amounts of anteiso-C15  :  0, anteiso-C17  :  0, iso-C16  :  1 H, iso-C17  :  0, iso-C18  :  0, C14  :  0, C17  :  0, C18  :  0, C18  :  1ω9c, iso-C17  :  1ω10c and anteiso-C17  :  0B/isoI. Diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylglycerol were the major polar lipids of both strains. Cell-wall amino acids were l-alanine, d-alanine, d-glutamic acid and meso-diaminopimelic acid. The genomic DNA G+C content of strains JC247T and JC248 was 48.2 and 48.1 mol%, respectively. Both strains were closely related with mean DNA-DNA hybridization >90 %. 16S rRNA gene sequence analysis of both strains indicated that they are members of the genus Bacillus within the family Bacillaceae of the phylum Firmicutes. Both strains had a 16S rRNA gene sequence similarity of 96.93 % with Bacillus firmus NCIMB 9366T and Bacillus. Sequence similarity between strain JC247T and JC248 was 100 %. Distinct morphological, physiological and genotypic differences from previously described taxa support the classification of strains JC247T and JC248 as representatives of a novel species of the genus Bacillus, for which the name Bacilluscrescens sp. nov. is proposed. The type strain is JC247T ( = KCTC 33627T = LMG 28608T).

  9. Study towards integration of In0.53Ga0.47As on 300 mm Si for CMOS sub-7 nm node: Development of thin graded InxGa1-xAs buffers on GaAs

    Science.gov (United States)

    Mols, Y.; Kunert, B.; Gaudin, G.; Langer, R.; Caymax, M.

    2016-10-01

    High-quality InxGa1-xAs layers with indium composition between 0.46 and 0.50 have been grown in a 300 mm industrial MOVPE reactor using ≤1 μm thin InxGa1-xAs buffers on 2″ GaAs substrates. Aggressive grading of 3.7 to 3.8% misfit/μm, fast growth rates in the range of 0.2-2.2 nm/s and low growth temperatures of 530 °C and 450 °C were used. AFM reveals a significant difference in root mean square surface roughness of 3.6 nm (530 °C) versus 15.5 nm (450 °C). Cross-section TEM analysis shows that for both temperatures threading dislocations are effectively confined to the buffer region. However, at 450 °C phase separation is observed in the upper part of the structure. From plan-view TEM threading dislocation densities as low as 1×105 cm-2 and 4.5×105 cm-2 are estimated for growth at 530 °C and 450 °C, respectively.

  10. Formation of Ni Diffusion-Induced Surface Traps in GaN/Al x Ga1- x N/GaN Heterostructures on Silicon Substrate During Gate Metal Deposition

    Science.gov (United States)

    Kajen, R. S.; Bera, L. K.; Tan, H. R.; Dolmanan, S. B.; Cheong, Z. W.; Tripathy, S.

    2016-01-01

    The diffusion of the Schottky metal (Ni) in GaN is known to occur at elevated temperatures and as a result of prolonged electric field-driven stress. This leads to device degradation and reliability issues in Al x Ga1- x N/GaN-on-silicon high electron mobility transistors (HEMTs). In this study, we have investigated the formation of Ni-induced deep level traps across the Ni-GaN interface in Al x Ga1- x N/GaN HEMT-based Schottky diodes on Si substrates during the Schottky metal deposition process prior to any gate/Schottky metal annealing step. Two deep level traps were detected at 0.14 eV and 0.54 eV using Fourier deep level transient spectroscopy, which correlated well with nitrogen vacancies and nitrogen antisite defects, respectively. Our results are further supported by transmission electron microscopy-based energy dispersive x-ray analysis and electron energy loss spectroscopy measurements which confirm the interdiffusion of Ga and Ni across the Ni/GaN interface on the HEMT structure. Understanding the nature of such defects may help to employ suitable growth or passivation schemes for development of improved GaN-based electronic devices.

  11. Utilization of Metal Sulfide Material of (CuGa)(1-x)Zn(2x)S2 Solid Solution with Visible Light Response in Photocatalytic and Photoelectrochemical Solar Water Splitting Systems.

    Science.gov (United States)

    Kato, Takaaki; Hakari, Yuichiro; Ikeda, Satoru; Jia, Qingxin; Iwase, Akihide; Kudo, Akihiko

    2015-03-19

    Upon forming a solid solution between CuGaS2 and ZnS, we have successfully developed a highly active (CuGa)(1-x)Zn(2x)S2 photocatalyst for H2 evolution in the presence of sacrificial reagents under visible light irradiation. The Ru-loaded (CuGa)0.8Zn0.4S2 functioned as a H2-evolving photocatalyst in a Z-scheme system with BiVO4 of an O2-evolving photocatalyst and Co complexes of an electron mediator. The Z-scheme system split water into H2 and O2 under visible light and simulated sunlight irradiation. The (CuGa)(1-x)Zn(2x)S2 possessed a p-type semiconductor character. The photoelectrochemical cell with a Ru-loaded (CuGa)0.5ZnS2 photocathode and a CoO(x)-modified BiVO4 photoanode split water even without applying an external bias. Thus, we successfully demonstrated that the metal sulfide material group can be available for Z-scheme and electrochemical systems to achieve solar water splitting into H2 and O2.

  12. Synthesis of lipoteichoic acids in Bacillus anthracis.

    Science.gov (United States)

    Garufi, Gabriella; Hendrickx, Antoni P; Beeri, Karen; Kern, Justin W; Sharma, Anshika; Richter, Stefan G; Schneewind, Olaf; Missiakas, Dominique

    2012-08-01

    Lipoteichoic acid (LTA), a glycerol phosphate polymer, is a component of the envelope of Gram-positive bacteria that has hitherto not been identified in Bacillus anthracis, the causative agent of anthrax. LTA synthesis in Staphylococcus aureus and other microbes is catalyzed by the product of the ltaS gene, a membrane protein that polymerizes polyglycerol phosphate from phosphatidyl glycerol. Here we identified four ltaS homologues, designated ltaS1 to -4, in the genome of Bacillus anthracis. Polyglycerol phosphate-specific monoclonal antibodies were used to detect LTA in the envelope of B. anthracis strain Sterne (pXO1(+) pXO2(-)) vegetative forms. B. anthracis mutants lacking ltaS1, ltaS2, ltaS3, or ltaS4 did not display defects in growth or LTA synthesis. In contrast, B. anthracis strains lacking both ltaS1 and ltaS2 were unable to synthesize LTA and exhibited reduced viability, altered envelope morphology, aberrant separation of vegetative forms, and decreased sporulation efficiency. Expression of ltaS1 or ltaS2 alone in B. anthracis as well as in other microbes was sufficient for polyglycerol phosphate synthesis. Thus, similar to S. aureus, B. anthracis employs LtaS enzymes to synthesize LTA, an envelope component that promotes bacterial growth and cell division.

  13. Antimicrobial Effects of Honey on Bacillus Cereus

    Directory of Open Access Journals (Sweden)

    This paper should be cited as: Javadzadeh M, Najafi M, Rezaei M, Dastoor M, Behzadi AS, Amiri A . [ Antimicrobial Effects of Honey on Bacillus Cereus ]. MLJ. 201 4 ; 8 ( 2 : 55 - 61 [Article in Persian] Javadzadeh, M. (MSc

    2014-05-01

    Full Text Available Background and Objective: Honey is a healthy and nutritious food that has been used for a long time as a treatment for different diseases. One of the applied properties of honey is its antimicrobial effect, which differs between different types of honey due to variation of phenolic and antioxidant compositions. This study aimed to assess antimicrobial effect of honey on Bacillus cereus, considering its chemical properties. Material and Methods: Three samples of honey (A1 and A2 of Khorasan Razavi Province and A3 of South Khorasan province (were prepared and studied in terms of chemical parameters .The antibacterial effect of honey was surveyed throughTurbidimeter using spectrometer with incubator time of 2, 4, 6, and 8hrs. the level of turbidity caused by bacterium growth was measured at different times with a wavelength of 600nm. Results: According to the study, the samples containing higher concentration of polyphenol has more antimicrobial activity. The samples of A2, A3, and A1 had the highest concentration of polyphenol, respectively. Conclusion: The results indicate the prebiotic effect of honey that can be justified by the presence of fructo-oligosacharids and vitamin B. Keywords: Honey, Bacillus Cereus, Antibacterial, Turbidimetry.

  14. Primary Analysis of Antifungal Proteins Produced by Bacillus amylolique faciens X-278 against Verticillium dahliae%解淀粉芽孢杆菌X-278菌株抗菌蛋白初步分析

    Institute of Scientific and Technical Information of China (English)

    黎波; 魏学军; 李亚宁; 孟庆芳; 张汀; 刘大群; 赤国彤

    2013-01-01

    为研究解淀粉芽孢杆菌X-278菌株所产抗菌蛋白的性质,通过饱和硫酸铵沉淀法提取X-278菌株蛋白粗提液,并对蛋白粗提液进行蛋白酶稳定性试验和热稳定性试验.结果表明,当硫酸铵饱和度为50%时,沉淀得到的X-278菌株蛋白粗提液对棉花黄萎病菌的押菌作用最强,抑菌圈直径迭18.9 mm.蛋白粗提液对蛋白酶K敏感性最差,对胰蛋白酶最敏感;蛋白粗提液经40℃处理后押菌活性最高,而121℃处理后抑菌活性最低,抑菌圈直径为13.6 mm,为对照(常温处理)的72%.以上结果表明,X-278菌株粗蛋白的部分抗菌成分属于耐热物质,并且抗菌成分间存在性质上的差异.%In order to study the characteristics of antifungal proteins isolated from Bacillus amyloliquefaciens X-278,crude proteins were extracted via precipitation of the cell culture of strain X-278 with ammonium sulphate,and the protease stability and thermal stability were determined.The result showed that the crude proteins of strain X-278 had strongest control effect on cotton Verticillium wilt using ammonium sulphate at 50% saturation,with the inhibition zone diameter of 18.9 mm.The crude protein extracts were relatively insensitive to proteinase K,but more sensitive to trypsin.The activity of the antifungal substrates was investigated under different temperatures,and the result showed that the antifungal activity at 40 ℃ was the highest,while it decreased most at 121 ℃ and showed significant difference from the control.However,the crude protein extracts still retained 72 % of the antifungal activity compared to the control and the diameter of inhibition zone was 13.6 mm after heat treatment for 30 min under 121 ℃.The results above indicated that part of the antifungal extracts of Bacillus amyloliquefaciens X-278 were heat-resistant substance and the antifungal extracts were several substrates with different traits.

  15. ISOLATION AND CHARACTERIZATION OF CRUDE OIL DEGRADING BACILLUS SPP.

    Directory of Open Access Journals (Sweden)

    A. Akhavan Sepahi, I. Dejban Golpasha, M. Emami, A. M. Nakhoda

    2008-07-01

    Full Text Available Today, application of microorganisms for removing crude oil pollution from contaminated sites as bioremediation studies, was considered by scientists because other methods such as surfactant washing and incineration lead to production of more toxic compounds and they are non-economic. Fifteen crude oil degrading bacillus spp. were isolated from contaminated sites. Two isolated showed best growth in liquid media with 1-3% (v/v crude oil and mineral salt medium, then studied for enzymatic activities on tested media. The results showed maximal increase in optical densities and total viable count concomitant with decrease in pH on fifth day of experimental period for bacillus S6. Typical generation time on mineral salt with 1% crude oil is varying between 18-20h, 25-26h respectively for bacillus S6 and S35. Total protein was monitored at determined time intervals as biodegradation indices. Increasing of protein concentration during the incubation period reveals that isolated bacillus can degrade crude oil and increase microbial biomass. These bacillus spp. reduced surface tension from 60 (mN/m to 31 and 38 (mN/m, It means that these bacillus spp. can produce sufficient surfactant and have good potential of emulsification capacity. The results demonstrated that these bacillus spp. can utilize crude oil as a carbon and energy source.

  16. Real-Time PCR Identification of Unique Bacillus anthracis Sequences.

    Science.gov (United States)

    Cieślik, P; Knap, J; Kolodziej, M; Mirski, T; Joniec, J; Graniak, G; Zakowska, D; Winnicka, I; Bielawska-Drózd, A

    2015-01-01

    Bacillus anthracis is a spore-forming, Gram-positive microorganism. It is a causative agent of anthrax, a highly infectious disease. It belongs to the "Bacillus cereus group", which contains other closely related species, including Bacillus cereus, Bacillus thuringiensis, Bacillus mycoides, Bacillus weihenstephanensis, and Bacillus pseudomycoides. B. anthracis naturally occurs in soil environments. The BA5345 genetic marker was used for highly specific detection of B. anthracis with TaqMan probes. The detection limit of a real-time PCR assay was estimated at the level of 16.9 copies (CI95% - 37.4 to 37.86, SD = 0.2; SE = 0.118). Oligonucleotides designed for the targeted sequences (within the tested locus) revealed 100 % homology to B. anthracis strain reference sequences deposited in the database (NCBI) and high specificity to all tested B. anthracis strains. Additional in silico analysis of plasmid markers pag and cap genes with B. anthracis strains included in the database was carried out. Our study clearly indicates that the BA5345 marker can be used with success as a chromosomal marker in routine identification of B. anthracis; moreover, detection of plasmid markers indicates virulence of the examined strains.

  17. Identification of Bacillus strains for biological control of catfish pathogens.

    Science.gov (United States)

    Ran, Chao; Carrias, Abel; Williams, Malachi A; Capps, Nancy; Dan, Bui C T; Newton, Joseph C; Kloepper, Joseph W; Ooi, Ei L; Browdy, Craig L; Terhune, Jeffery S; Liles, Mark R

    2012-01-01

    Bacillus strains isolated from soil or channel catfish intestine were screened for their antagonism against Edwardsiella ictaluri and Aeromonas hydrophila, the causative agents of enteric septicemia of catfish (ESC) and motile aeromonad septicaemia (MAS), respectively. Twenty one strains were selected and their antagonistic activity against other aquatic pathogens was also tested. Each of the top 21 strains expressed antagonistic activity against multiple aquatic bacterial pathogens including Edwardsiella tarda, Streptococcus iniae, Yersinia ruckeri, Flavobacterium columnare, and/or the oomycete Saprolegnia ferax. Survival of the 21 Bacillus strains in the intestine of catfish was determined as Bacillus CFU/g of intestinal tissue of catfish after feeding Bacillus spore-supplemented feed for seven days followed by normal feed for three days. Five Bacillus strains that showed good antimicrobial activity and intestinal survival were incorporated into feed in spore form at a dose of 8×10(7) CFU/g and fed to channel catfish for 14 days before they were challenged by E. ictaluri in replicate. Two Bacillus subtilis strains conferred significant benefit in reducing catfish mortality (Pbiological control in vivo was also investigated in terms of whether the strains contain plasmids or express resistance to clinically important antibiotics. The Bacillus strains identified from this study have good potential to mediate disease control as probiotic feed additives for catfish aquaculture.

  18. A Bacillus spp.Strain against Penicillium expansum: Screening,Identification,Phylogenetic Analysis and Activity of Extracellular Antibacterial Substances from It%扩展青霉拮抗菌的筛选鉴定及抗菌物质分析

    Institute of Scientific and Technical Information of China (English)

    孔维嘉; 王洋; 尚楠; 张宝; 李平兰

    2011-01-01

    In order to obtain a Bacillus spp.that can protect post-harvest fruits from blue mould and patulin,plate confrontation test and double layer agar diffusion method were used for strain screening in this study.The Bacillus strain LPL-T12 isolated from oolong tea exhibited the best antibacterial effect,whose fermentation supernatant had an inhibitory zone diameter of(22.74 ± 0.44) mm against Penicillium expansum 3.3703.In addition,LPL-T12 was identified as Bacillus amyloliquefaciens through morphological observation,physiological and biochemical experiments,16S rDNA sequence analysis and specific PCR amplification.After the fermentation supernatant of the strain was subjected to ammonium sulfate precipitation and dialysis against several different pore-size membranes,a thermosensitive protein with molecular weight of more than 8000 D was obtained based on antibacterial activity analysis,protease hydrolysis and heating treatment.%为了防止水果采后青霉病的发生及青霉毒素带来的危害,本实验以扩展青霉(Penicillium expansum 3.3703)为指示菌,采用平板对峙法和双层平板琼脂扩散法筛选得到1株来源于乌龙茶的LPL-T12菌株,其发酵上清液抑菌圈直径达(22.74±0.44)mm。菌株经形态学观察、生理生化实验、16S rDNA序列及特异性PCR分析可知,LPL-T12菌株为解淀粉芽孢杆菌(Bacillus amyloliquefaciens)。菌株发酵液通过硫酸铵沉淀及不同孔径透析袋截留后,粗提物经抑菌活性检测、蛋白

  19. Screening of Bacillus Species with Potentials of Antibiotics Production

    OpenAIRE

    Faruk Adamu KUTA; Lohya NIMZING; Priscilla Yahemba ORKA’A

    2009-01-01

    Sixteen soil samples were collected from different refuse dump sites in Minna, the capital Niger State, and analysed for the presence of Bacillus species. Physical-chemical analysis of the soil samples revealed the followings: PH value 6.89-8.47; moisture content 1.58 – 21.21% and temperature 27-28ºC. Using both pour plate and streak method of inoculation, total bacterial count in the soil samples ranged from 3.8×104 cfu/g 16.0×104 cfu/g. The identified Bacillus species included: Bacillus cer...

  20. Flow-cytometric Analysis of Bacillus anthracis Spores

    Directory of Open Access Journals (Sweden)

    D. V. Kamboj

    2006-11-01

    Full Text Available Flow-cytometric technique has been established as a powerful tool for detection andidentification of microbiological agents. Unambiguous and rapid detection of Bacillus anthracisspores has been reported using immunoglobulin G-fluorescein isothiocyanate conjugate againstlive spores. In addition to the high sensitivity, the present technique could differentiate betweenspores of closely related species, eg, Bacillus cereus and Bacillus subtilis using fluorescenceintensity. The technique can be used for detection of live as well as inactivated spores makingit more congenial for screening of suspected samples of bioterrorism.

  1. An Optical Biosensor for Bacillus Cereus Spore Detection

    Science.gov (United States)

    Li, Chengquan; Tom, Harry W. K.

    2005-03-01

    We demonstrate a new transduction scheme for optical biosensing. Bacillus cereus is a pathogen that may be found in food and dairy products and is able to produce toxins and cause food poisoning. It is related to Bacillus anthracis (anthrax). A CCD array covered with micro-structured glass coverslip is used to detect the optical resonant shift due to the binding of the antigen (bacillus cereus spore) to the antibody (polyclonal antibody). This novel optical biosensor scheme has the potential for detecting 10˜100 bioagents in a single device as well as the potential to test for antigens with multiple antibody tests to avoid ``false positives.''

  2. Expression, purification, and characterization of a thermophilic neutral protease from Bacillus stearothermophilus in Bacillus subtilis

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    The gene coding for a thermophilic neutral protease from Bacillus stearothermophilus was expressed in Bacillus subtilis DB104, under the control of the sacB gene promoter. This was followed by either the native signal peptide sequence of this protease or the signal peptide sequence of the sacB gene. The protease was purified 3.8-fold, with a specific activity of 16530 U mg-1. As analyzed by SDS-PAGE, the molecular mass of the expressed protease was about 35 kDa, and the optimal temperature and pH of the protease were 65℃ and 7.5, respectively. Moreover, it still had about 80% activity after 1 h reaction at 65 ℃ .

  3. Expression, purification, and characterization of a thermophilic neutral protease from Bacillus stearothermophilus in Bacillus subtilis

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    The gene coding for a thermophilic neutral protease from Bacillus stearothermophilus was expressed in Bacillus subtilis DB104, under the control of the sacB gene promoter. This was followed by either the native signal peptide sequence of this protease or the signal peptide sequence of the sacB gene. The protease was purified 3.8-fold, with a specific activity of 16530 U mg-1. As analyzed by SDS-PAGE, the molecular mass of the expressed protease was about 35 kDa, and the optimal temperature and pH of the protease were 65℃ and 7.5, respectively. Moreover, it still had about 80% activity after 1 h reaction at 65℃.

  4. Multilocus sequence analysis of Bacillus thuringiensis serovars navarrensis, bolivia and vazensis and Bacillus weihenstephanensis reveals a common phylogeny.

    Science.gov (United States)

    Soufiane, Brahim; Baizet, Mathilde; Côté, Jean-Charles

    2013-01-01

    The Bacillus cereus group sensu lato includes six closely-related bacterial species: Bacillus cereus, Bacillus anthracis, Bacillus thuringiensis, Bacillus mycoides, Bacillus pseudomycoides and Bacillus weihenstephanensis. B. thuringiensis is distinguished from the other species mainly by the appearance of an inclusion body upon sporulation. B. weihenstephanensis is distinguished based on its psychrotolerance and the presence of specific signature sequences in the 16S rRNA gene and cspA genes. A total of seven housekeeping genes (glpF, gmK, ilvD, pta, purH, pycA and tpi) from different B. thuringiensis serovars and B. weihenstephanensis strains were amplified and their nucleotide sequences determined. A maximum likelihood phylogenetic tree was inferred from comparisons of the concatenated sequences. B. thuringiensis serovars navarrensis, bolivia and vazensis clustered not with the other B. thuringiensis serovars but rather with the B. weihenstephanensis strains, indicative of a common phylogeny. In addition, specific signature sequences and single nucleotide polymorphisms common to B. thuringiensis serovars navarrensis, bolivia and vazensis and the B. weihenstephanensis strains, and absent in the other B. thuringiensis serovars, were identified.

  5. 77 FR 73934 - Bacillus subtilis Strain QST 713 Variant Soil; Amendment to an Exemption From the Requirement of...

    Science.gov (United States)

    2012-12-12

    ... AGENCY 40 CFR Part 180 Bacillus subtilis Strain QST 713 Variant Soil; Amendment to an Exemption From the Requirement of a Tolerance for Bacillus subtilis Strain QST 713 To Include Residues of Bacillus subtilis... Bacillus subtilis strain QST 713 in or on all food commodities by including residues of Bacillus...

  6. Bacillus thuringiensis as a surrogate for Bacillus anthracis in aerosol research.

    Science.gov (United States)

    Tufts, Jenia A M; Calfee, M Worth; Lee, Sang Don; Ryan, Shawn P

    2014-05-01

    Characterization of candidate surrogate spores prior to experimental use is critical to confirm that the surrogate characteristics are as closely similar as possible to those of the pathogenic agent of interest. This review compares the physical properties inherent to spores of Bacillus anthracis (Ba) and Bacillus thuringiensis (Bt) that impact their movement in air and interaction with surfaces, including size, shape, density, surface morphology, structure and hydrophobicity. Also evaluated is the impact of irradiation on the physical properties of both Bacillus species. Many physical features of Bt and Ba have been found to be similar and, while Bt is considered typically non-pathogenic, it is in the B. cereus group, as is Ba. When cultured and sporulated under similar conditions, both microorganisms share a similar cylindrical pellet shape, an aerodynamic diameter of approximately 1 μm (in the respirable size range), have an exosporium with a hairy nap, and have higher relative hydrophobicities than other Bacillus species. While spore size, morphology, and other physical properties can vary among strains of the same species, the variations can be due to growth/sporulation conditions and may, therefore, be controlled. Growth and sporulation conditions are likely among the most important factors that influence the representativeness of one species, or preparation, to another. All Bt spores may, therefore, not be representative of all Ba spores. Irradiated spores do not appear to be a good surrogate to predict the behavior of non-irradiated spores due to structural damage caused by the irradiation. While the use of Bt as a surrogate for Ba in aerosol testing appears to be well supported, this review does not attempt to narrow selection between Bt strains. Comparative studies should be performed to test the hypothesis that viable Ba and Bt spores will behave similarly when suspended in the air (as an aerosol) and to compare the known microscale characteristics

  7. Bacillus thuringiensis and Bacillus weihenstephanensis Inhibit the Growth of Phytopathogenic Verticillium Species.

    Science.gov (United States)

    Hollensteiner, Jacqueline; Wemheuer, Franziska; Harting, Rebekka; Kolarzyk, Anna M; Diaz Valerio, Stefani M; Poehlein, Anja; Brzuszkiewicz, Elzbieta B; Nesemann, Kai; Braus-Stromeyer, Susanna A; Braus, Gerhard H; Daniel, Rolf; Liesegang, Heiko

    2016-01-01

    Verticillium wilt causes severe yield losses in a broad range of economically important crops worldwide. As many soil fumigants have a severe environmental impact, new biocontrol strategies are needed. Members of the genus Bacillus are known as plant growth-promoting bacteria (PGPB) as well as biocontrol agents of pests and diseases. In this study, we isolated 267 Bacillus strains from root-associated soil of field-grown tomato plants. We evaluated the antifungal potential of 20 phenotypically diverse strains according to their antagonistic activity against the two phytopathogenic fungi Verticillium dahliae and Verticillium longisporum. In addition, the 20 strains were sequenced and phylogenetically characterized by multi-locus sequence typing (MLST) resulting in 7 different Bacillus thuringiensis and 13 Bacillus weihenstephanensis strains. All B. thuringiensis isolates inhibited in vitro the tomato pathogen V. dahliae JR2, but had only low efficacy against the tomato-foreign pathogen V. longisporum 43. All B. weihenstephanensis isolates exhibited no fungicidal activity whereas three B. weihenstephanensis isolates showed antagonistic effects on both phytopathogens. These strains had a rhizoid colony morphology, which has not been described for B. weihenstephanensis strains previously. Genome analysis of all isolates revealed putative genes encoding fungicidal substances and resulted in identification of 304 secondary metabolite gene clusters including 101 non-ribosomal polypeptide synthetases and 203 ribosomal-synthesized and post-translationally modified peptides. All genomes encoded genes for the synthesis of the antifungal siderophore bacillibactin. In the genome of one B. thuringiensis strain, a gene cluster for zwittermicin A was detected. Isolates which either exhibited an inhibitory or an interfering effect on the growth of the phytopathogens carried one or two genes encoding putative mycolitic chitinases, which might contribute to antifungal activities

  8. Bacillus thuringiensis and Bacillus weihenstephanensis Inhibit the Growth of Phytopathogenic Verticillium Species

    Science.gov (United States)

    Hollensteiner, Jacqueline; Wemheuer, Franziska; Harting, Rebekka; Kolarzyk, Anna M.; Diaz Valerio, Stefani M.; Poehlein, Anja; Brzuszkiewicz, Elzbieta B.; Nesemann, Kai; Braus-Stromeyer, Susanna A.; Braus, Gerhard H.; Daniel, Rolf; Liesegang, Heiko

    2017-01-01

    Verticillium wilt causes severe yield losses in a broad range of economically important crops worldwide. As many soil fumigants have a severe environmental impact, new biocontrol strategies are needed. Members of the genus Bacillus are known as plant growth-promoting bacteria (PGPB) as well as biocontrol agents of pests and diseases. In this study, we isolated 267 Bacillus strains from root-associated soil of field-grown tomato plants. We evaluated the antifungal potential of 20 phenotypically diverse strains according to their antagonistic activity against the two phytopathogenic fungi Verticillium dahliae and Verticillium longisporum. In addition, the 20 strains were sequenced and phylogenetically characterized by multi-locus sequence typing (MLST) resulting in 7 different Bacillus thuringiensis and 13 Bacillus weihenstephanensis strains. All B. thuringiensis isolates inhibited in vitro the tomato pathogen V. dahliae JR2, but had only low efficacy against the tomato-foreign pathogen V. longisporum 43. All B. weihenstephanensis isolates exhibited no fungicidal activity whereas three B. weihenstephanensis isolates showed antagonistic effects on both phytopathogens. These strains had a rhizoid colony morphology, which has not been described for B. weihenstephanensis strains previously. Genome analysis of all isolates revealed putative genes encoding fungicidal substances and resulted in identification of 304 secondary metabolite gene clusters including 101 non-ribosomal polypeptide synthetases and 203 ribosomal-synthesized and post-translationally modified peptides. All genomes encoded genes for the synthesis of the antifungal siderophore bacillibactin. In the genome of one B. thuringiensis strain, a gene cluster for zwittermicin A was detected. Isolates which either exhibited an inhibitory or an interfering effect on the growth of the phytopathogens carried one or two genes encoding putative mycolitic chitinases, which might contribute to antifungal activities

  9. Structure-composition sensitivity in “Metallic” Zintl phases: A study of Eu(Ga1-xTtx)2 (Tt=Si, Ge, 0≤x≤1)

    Science.gov (United States)

    You, Tae-Soo; Zhao, Jing-Tai; Pöttgen, Rainer; Schnelle, Walter; Burkhardt, Ulrich; Grin, Yuri; Miller, Gordon J.

    2009-09-01

    Two isoelectronic series, Eu(Ga 1-xTt x) 2 ( Tt=Si, Ge, 0≤ x≤1), have been synthesized and characterized by powder and single-crystal X-ray diffraction, physical property measurements, and electronic structure calculations. In Eu(Ga 1-xSi x) 2, crystal structures vary from the KHg 2-type to the AlB 2-type, and, finally, the ThSi 2-type structure as x increases. The hexagonal AlB 2-type structure is identified for compositions 0.18(2)≤ xKHg 2-type; space group Imma) and EuGe 2 (own structure type, space group P3¯ m1), the ternary phases studied show four different structures: the AlB 2-type for Ga-rich compositions; the YPtAs-type structure for EuGaGe; and two new structures, which are intergrowths of the YPtAs-type EuGaGe and EuGe 2, for Ge-rich compositions. These two Ge-rich phases include: (1) Eu(Ga 0.45(2)Ge 0.55(2)) 2 containing two YPtAs-type motifs of EuGaGe plus one EuGe 2 motif; and (2) Eu(Ga 0.40(2)Ge 0.60(2)) 2 containing one YPtAs-type motif alternating with a split site at x={2}/{3}, y={1}/{3} and z=0.4798(2) with ca. 50% site occupancy by Ga and Ge along the c-axis. Magnetic susceptibilities of three Eu(Ga 1-xGe x) 2 compounds display Curie-Weiss behavior above ca. 100 K, and show effective magnetic moments indicative of divalent Eu with a 4 f7 electronic configuration, consistent with. X-ray absorption spectra (XAS). Density of states (DOS) and crystal orbital Hamilton population (COHP) analyses, based on first principles electronic structure calculations, rationalize the observed homogeneity ranges of the AlB 2-type phases in both systems and the structural variations as a function of Tt content.

  10. Synergy between toxins of Bacillus thuringiensis subsp. israelensis and Bacillus sphaericus.

    Science.gov (United States)

    Wirth, Margaret C; Jiannino, Joshua A; Federici, Brian A; Walton, William E

    2004-09-01

    Synergistic interactions among the multiple endotoxins of Bacillus thuringiensis subsp. israelensis de Barjac play an important role in its high toxicity to mosquito larvae and the absence of insecticide resistance in populations treated with this bacterium. A lack of toxin complexity and synergism are the apparent causes of resistance to Bacillus sphaericus Neide in particular Culex field populations. To identify endotoxin combinations of the two Bacillus species that might improve insecticidal activity and manage mosquito resistance to B. sphaericus, we tested their toxins alone and in combination. Most combinations of B. sphaericus and B. t. subsp. israelensis toxins were synergistic and enhanced toxicity relative to B. sphaericus, particularly against Culex quinquefasciatus Say larvae resistant to B. sphaericus and Aedes aegypti (L.), a species poorly susceptible to B. sphaericus. Toxicity also improved against susceptible Cx. quinquefasciatus. For example, when the CytlAa toxin from B. t. subsp. israelensis was added to Bin and Cry toxins, or when native B. t. subsp. israelensis was combined with B. sphaericus, synergism values as high as 883-fold were observed and combinations were 4-59,000-fold more active than B. sphaericus. These data, and previous studies using cytolytic toxins, validate proposed strategies for improving bacterial larvicides by combining B. sphaericus with B. t. subsp. israelensis or by engineering recombinant bacteria that express endotoxins from both strains. These combinations increase both endotoxin complexity and synergistic interactions and thereby enhance activity and help avoid insecticide resistance.

  11. Partial purification and characterization of protease enzyme from Bacillus subtilis and Bacillus cereus.

    Science.gov (United States)

    Orhan, Elif; Omay, Didem; Güvenilir, Yüksel

    2005-01-01

    The aim of this experimental study was to isolate and partially purify protease enzyme from Bacillus cereus and Bacillus subtilis. Protease enzyme is obtained by inducing spore genesis of bacteria from Bacillus species in suitable nutrient plates. The partial purification was realized by applying, respectively, ammonium sulfate precipitation, dialysis, and DEAE-cellulose ion-exchange chromatography to the supernatant that was produced later. Optimum pH, optimum temperature, pH stability, and temperature stability were determined, as well as the effects of pH, temperature, substrate concentration, reaction time, and inhibitors and activators on enzyme activity. In addition, the molecular mass of the obtained enzyme was investigated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The specific activity of partially purified enzyme from B. subtilis was determined to be 84 U/mg. The final enzyme preparation was eight-fold more pure than the crude homogenate. The molecular mass of the partially purified enzyme was found to be 45 kDa by using SDS-PAGE. The protease enzyme that was partially purified from B. cereus was purified 1.2-fold after ammonium sulfate precipitation. The molecular mass of the partially purified enzyme was determined to be 37 kDa by using SDS-PAGE.

  12. Bacillus subtilis as potential producer for polyhydroxyalkanoates

    Directory of Open Access Journals (Sweden)

    Patel Sanjay KS

    2009-07-01

    Full Text Available Abstract Polyhydroxyalkanoates (PHAs are biodegradable polymers produced by microbes to overcome environmental stress. Commercial production of PHAs is limited by the high cost of production compared to conventional plastics. Another hindrance is the brittle nature and low strength of polyhydroxybutyrate (PHB, the most widely studied PHA. The needs are to produce PHAs, which have better elastomeric properties suitable for biomedical applications, preferably from inexpensive renewable sources to reduce cost. Certain unique properties of Bacillus subtilis such as lack of the toxic lipo-polysaccharides, expression of self-lysing genes on completion of PHA biosynthetic process – for easy and timely recovery, usage of biowastes as feed enable it to compete as potential candidate for commercial production of PHA.

  13. Bacillus cereus panophthalmitis after intravenous heroin.

    Science.gov (United States)

    Hatem, G; Merritt, J C; Cowan, C L

    1979-03-01

    Two healthy young black men developed panophthalmitis after intravenous heroin injections. Bacillus cereus, considered to be a relatively noncommon pathogen for man, was found to be the causative agent as it was recovered from the anterior chamber and viterous cavity of both cases. The ocular findings were unilateral in each case, and neither patient had any sistemic involvement from the bacteremia. The onset of visual symptoms varied from 24 to 36 hours after the last intravenous injection with the eye becoming rapidly blind. Photographs of the early fundus lesions included preretinal hypopyon-like lesions and peculiar changes in the blood vasculature. Intracameral gentamicin and steroids did not alter the cause, and treatment was enucleation.

  14. Bacillus anthracis Bioterrorism Incident, Kameido, Tokyo, 1993

    Science.gov (United States)

    Keim, Paul; Kaufmann, Arnold F.; Keys, Christine; Smith, Kimothy L.; Taniguchi, Kiyosu; Inouye, Sakae; Kurata, Takeshi

    2004-01-01

    In July 1993, a liquid suspension of Bacillus anthracis was aerosolized from the roof of an eight-story building in Kameido, Tokyo, Japan, by the religious group Aum Shinrikyo. During 1999 to 2001, microbiologic tests were conducted on a liquid environmental sample originally collected during the 1993 incident. Nonencapsulated isolates of B. anthracis were cultured from the liquid. Multiple-locus, variable-number tandem repeat analysis found all isolates to be identical to a strain used in Japan to vaccinate animals against anthrax, which was consistent with the Aum Shinrikyo members’ testimony about the strain source. In 1999, a retrospective case-detection survey was conducted to identify potential human anthrax cases associated with the incident, but none were found. The use of an attenuated B. anthracis strain, low spore concentrations, ineffective dispersal, a clogged spray device, and inactivation of the spores by sunlight are all likely contributing factors to the lack of human cases. PMID:15112666

  15. Sludge based Bacillus thuringiensis biopesticides: viscosity impacts.

    Science.gov (United States)

    Brar, S K; Verma, M; Tyagi, R D; Valéro, J R; Surampalli, R Y

    2005-08-01

    Viscosity studies were performed on raw, pre-treated (sterilised and thermal alkaline hydrolysed or both types of treatment) and Bacillus thuringiensis (Bt) fermented sludges at different solids concentration (10-40 g/L) for production of biopesticides. Correlations were established among rheological parameter (viscosity), solids (total and dissolved) concentration and entomotoxicity (Tx) of Bt fermented sludges. Exponential and power laws were preferentially followed by hydrolysed fermented compared to raw fermented sludge. Soluble chemical oxygen demand variation corroborated with increase in dissolved solids concentration on pre-treatments, contributing to changes in viscosity. Moreover, Tx was higher for hydrolysed fermented sludge in comparison to raw fermented sludge owing to increased availability of nutrients and lower viscosity that improved oxygen transfer. The shake flask results were reproducible in fermenter. This study will have major impact on selecting fermentation, harvesting and formulation techniques of Bt fermented sludges for biopesticide production.

  16. Bacillus phytases: Current status and future prospects.

    Science.gov (United States)

    Borgi, Mohamed Ali; Boudebbouze, Samira; Mkaouar, Héla; Maguin, Emmanuelle; Rhimi, Moez

    2015-01-01

    Phytases catalyze the hydrolysis of phytic acid in a stepwise manner to lower inositol phosphates, myo-inositol (having important role in metabolism and signal transduction pathways), and inorganic phosphate. These enzymes have been widely used in animal feed in order to improve phosphorus nutrition and to decrease pollution in animal waste. Compared to previously described phytases, the phytase (PhyL) from Bacillus licheniformis ATCC 14580 has attractive biochemical properties which can increase the profitability of several biotechnological procedures (animal nutrition, humain health…etc). Due to its amino acid sequence with critical substitutions, the PhyL could be a model to enhance other phytases features, in terms of thermal stability and high activity. Otherwise, an engineered PhyL, with low pH optimum, will represent a challenge within the class of β- propeller phytases.

  17. Antagonistic competition moderates virulence in Bacillus thuringiensis.

    Science.gov (United States)

    Garbutt, Jennie; Bonsall, Michael B; Wright, Denis J; Raymond, Ben

    2011-08-01

    Classical models of the evolution of virulence predict that multiple infections should select for elevated virulence, if increased competitiveness arises from faster growth. However, diverse modes of parasite competition (resource-based, antagonism, immunity manipulation) can lead to adaptations with different implications for virulence. Using an experimental evolution approach we investigated the hypothesis that selection in mixed-strain infections will lead to increased antagonism that trades off against investment in virulence. Selection in mixed infections led to improved suppression of competitors in the bacterial insect pathogen Bacillus thuringiensis. Increased antagonism was associated with decreased virulence in three out of four selected lines. Moreover, mixed infections were less virulent than single-strain infections, and between-strain competition tended to decrease pathogen growth in vivo and in vitro. Spiteful interactions among these bacteria may be favoured because of the high metabolic costs of virulence factors and the high risk of mixed infections.

  18. The Complete Genome Sequence of Bacillus thuringiensis AlHakam

    Energy Technology Data Exchange (ETDEWEB)

    Challacombe, Jean F.; Altherr, Michael R.; Xie, Gary; Bhotika,Smriti S.; Brown, Nancy; Bruce, David; Campbell, Connie S.; Campbell,Mary L.; Chen, Jin; Chertkov, Olga; Cleland, Cathy; Dimitrijevic, Mira; Doggett, Norman A.; Fawcett, John J.; Glavina, Tijana; Goodwin, Lynne A.; Green, Lance D.; Han, Cliff S.; Hill, Karen K.; Hitchcock, Penny; Jackson, Paul J.; Keim, Paul; Kewalramani, Avinash Ramesh; Longmire, Jon; Lucas, Susan; Malfatti, Stephanie; Martinez, Diego; McMurry, Kim; Meincke, Linda J.; Misra, Monica; Moseman, Bernice L.; Mundt, Mark; Munk,A. Christine; Okinaka, Richard T.; Parson-Quintana, B.; Reilly, LeePhilip; Richardson, Paul; Robinson, Donna L.; Rubin, Eddy; Saunders,Elizabeth; Tapia, Roxanne; Tesmer, Judith G.; Thayer, Nina; Thompson,Linda S.; Tice, Hope; Ticknor, Lawrence O.; Wills, Patti L.; Gilna, Paul; Brettin, Thomas S.

    2007-04-01

    Bacillus thuringiensis is an insect pathogen that is widelyused as a biopesticide (3). Here we report the finished, annotated genomesequence of B. thuringiensis Al Hakam, which was collected in Iraq by theUnited Nations Special Commission (2).

  19. Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism

    DEFF Research Database (Denmark)

    Buescher, Joerg Martin; Liebermeister, Wolfram; Jules, Matthieu

    2012-01-01

    Adaptation of cells to environmental changes requires dynamic interactions between metabolic and regulatory networks, but studies typically address only one or a few layers of regulation. For nutritional shifts between two preferred carbon sources of Bacillus subtilis, we combined statistical...

  20. Two Genes Encoding Uracil Phosphoribosyltransferase Are Present in Bacillus subtilis

    DEFF Research Database (Denmark)

    Martinussen, Jan; Glaser, Philippe; Andersen, Paal S.

    1995-01-01

    Uracil phosphoribosyltransferase (UPRTase) catalyzes the key reaction in the salvage of uracil in many microorganisms. Surprisingly, two genes encoding UPRTase activity were cloned from Bacillus subtilis by complementation of an Escherichia coli mutant. The genes were sequenced, and the putative...