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Sample records for autotrophic feiii oxide

  1. The Geoglobus acetivorans genome: Fe(III) reduction, acetate utilization, autotrophic growth, and degradation of aromatic compounds in a hyperthermophilic archaeon.

    Science.gov (United States)

    Mardanov, Andrey V; Slododkina, Galina B; Slobodkin, Alexander I; Beletsky, Alexey V; Gavrilov, Sergey N; Kublanov, Ilya V; Bonch-Osmolovskaya, Elizaveta A; Skryabin, Konstantin G; Ravin, Nikolai V

    2015-02-01

    Geoglobus acetivorans is a hyperthermophilic anaerobic euryarchaeon of the order Archaeoglobales isolated from deep-sea hydrothermal vents. A unique physiological feature of the members of the genus Geoglobus is their obligate dependence on Fe(III) reduction, which plays an important role in the geochemistry of hydrothermal systems. The features of this organism and its complete 1,860,815-bp genome sequence are described in this report. Genome analysis revealed pathways enabling oxidation of molecular hydrogen, proteinaceous substrates, fatty acids, aromatic compounds, n-alkanes, and organic acids, including acetate, through anaerobic respiration linked to Fe(III) reduction. Consistent with the inability of G. acetivorans to grow on carbohydrates, the modified Embden-Meyerhof pathway encoded by the genome is incomplete. Autotrophic CO2 fixation is enabled by the Wood-Ljungdahl pathway. Reduction of insoluble poorly crystalline Fe(III) oxide depends on the transfer of electrons from the quinone pool to multiheme c-type cytochromes exposed on the cell surface. Direct contact of the cells and Fe(III) oxide particles could be facilitated by pilus-like appendages. Genome analysis indicated the presence of metabolic pathways for anaerobic degradation of aromatic compounds and n-alkanes, although an ability of G. acetivorans to grow on these substrates was not observed in laboratory experiments. Overall, our results suggest that Geoglobus species could play an important role in microbial communities of deep-sea hydrothermal vents as lithoautotrophic producers. An additional role as decomposers would close the biogeochemical cycle of carbon through complete mineralization of various organic compounds via Fe(III) respiration.

  2. Autotrophic Biofilters for Oxidation of Nitric Oxide

    Institute of Scientific and Technical Information of China (English)

    陈建孟; 陈浚; LanceHershman; 王家德; DanielP.Y.Chang

    2004-01-01

    Carbon foam—a kind of new engineering material as packing material was adopted in three biofilters with different pore dimensions and adapted autotrophic nitrite nitrobacteria to investigate the purification of nitric oxide (NO) in a gas stream. The biofilm was developed on the surface of carbon foams using nitrite as its only nitric source. The moisture in the filter was maintained by ultrasonic aerosol equipment which can minimize the thickness of the liquid film. The liquid phase nitrification test was conducted to determine the variability and the potential of performance among the three carbon foam biofilters. The investigation showed that during the NO2-—N inlet concentration of 200 g·L-1·min-1 to 800 g·L-1·min-1, the 24PPC (pores per centimeter) carbon foam biofilter had the greatest potential, achieving the NO2-—N removal efficiency of 94% to 98%. The 8PPC and 18PPC carbon foam biofilters achieved the NO2-—N removal efficiency of 15% to 21% and of 30% to 40%, respectively. The potential for this system to remove NO from a gas stream was shown on the basis of a steady removal efficiency of 41% to 50% which was attained for the 24PPC carbon foam biofilter at specified NO inlet concentration of 66.97 mg·m-3 to 267.86mg·m-3 and an empty-bed residence time of 3.5 min.

  3. An Experiment in Autotrophic Fermentation: Microbial Oxidation of Hydrogen Sulfide.

    Science.gov (United States)

    Sublette, Kerry L.

    1989-01-01

    Described is an experiment which uses an autotrophic bacterium to anaerobically oxidize hydrogen sulfide to sulfate in a batch-stirred tank reactor. Discusses background information, experimental procedure, and sample results of this activity. (CW)

  4. Outer cell surface components essential for Fe(III) oxide reduction by Geobacter metallireducens.

    Science.gov (United States)

    Smith, Jessica A; Lovley, Derek R; Tremblay, Pier-Luc

    2013-02-01

    Geobacter species are important Fe(III) reducers in a diversity of soils and sediments. Mechanisms for Fe(III) oxide reduction have been studied in detail in Geobacter sulfurreducens, but a number of the most thoroughly studied outer surface components of G. sulfurreducens, particularly c-type cytochromes, are not well conserved among Geobacter species. In order to identify cellular components potentially important for Fe(III) oxide reduction in Geobacter metallireducens, gene transcript abundance was compared in cells grown on Fe(III) oxide or soluble Fe(III) citrate with whole-genome microarrays. Outer-surface cytochromes were also identified. Deletion of genes for c-type cytochromes that had higher transcript abundance during growth on Fe(III) oxides and/or were detected in the outer-surface protein fraction identified six c-type cytochrome genes, that when deleted removed the capacity for Fe(III) oxide reduction. Several of the c-type cytochromes which were essential for Fe(III) oxide reduction in G. metallireducens have homologs in G. sulfurreducens that are not important for Fe(III) oxide reduction. Other genes essential for Fe(III) oxide reduction included a gene predicted to encode an NHL (Ncl-1-HT2A-Lin-41) repeat-containing protein and a gene potentially involved in pili glycosylation. Genes associated with flagellum-based motility, chemotaxis, and pili had higher transcript abundance during growth on Fe(III) oxide, consistent with the previously proposed importance of these components in Fe(III) oxide reduction. These results demonstrate that there are similarities in extracellular electron transfer between G. metallireducens and G. sulfurreducens but the outer-surface c-type cytochromes involved in Fe(III) oxide reduction are different.

  5. Advanced experimental analysis of controls on microbial Fe(III) oxide reduction. First year progress report

    Energy Technology Data Exchange (ETDEWEB)

    Roden, E.E.; Urrutia, M.M.

    1997-07-01

    'The authors have made considerable progress toward a number of project objectives during the first several months of activity on the project. An exhaustive analysis was made of the growth rate and biomass yield (both derived from measurements of cell protein production) of two representative strains of Fe(III)-reducing bacteria (Shewanellaalga strain BrY and Geobactermetallireducens) growing with different forms of Fe(III) as an electron acceptor. These two fundamentally different types of Fe(III)-reducing bacteria (FeRB) showed comparable rates of Fe(III) reduction, cell growth, and biomass yield during reduction of soluble Fe(III)-citrate and solid-phase amorphous hydrous ferric oxide (HFO). Intrinsic growth rates of the two FeRB were strongly influenced by whether a soluble or a solid-phase source of Fe(III) was provided: growth rates on soluble Fe(III) were 10--20 times higher than those on solid-phase Fe(III) oxide. Intrinsic FeRB growth rates were comparable during reduction of HF0 and a synthetic crystalline Fe(III) oxide (goethite). A distinct lag phase for protein production was observed during the first several days of incubation in solid-phase Fe(III) oxide medium, even though Fe(III) reduction proceeded without any lag. No such lag between protein production and Fe(III) reduction was observed during growth with soluble Fe(III). This result suggested that protein synthesis coupled to solid-phase Fe(III) oxide reduction in batch culture requires an initial investment of energy (generated by Fe(III) reduction), which is probably needed for synthesis of materials (e.g. extracellular polysaccharides) required for attachment of the cells to oxide surfaces. This phenomenon may have important implications for modeling the growth of FeRB in subsurface sedimentary environments, where attachment and continued adhesion to solid-phase materials will be required for maintenance of Fe(III) reduction activity. Despite considerable differences in the rate and

  6. Going wireless: Fe(III) oxide reduction without pili by Geobacter sulfurreducens strain JS-1.

    Science.gov (United States)

    Smith, Jessica A; Tremblay, Pier-Luc; Shrestha, Pravin Malla; Snoeyenbos-West, Oona L; Franks, Ashley E; Nevin, Kelly P; Lovley, Derek R

    2014-07-01

    Previous studies have suggested that the conductive pili of Geobacter sulfurreducens are essential for extracellular electron transfer to Fe(III) oxides and for optimal long-range electron transport through current-producing biofilms. The KN400 strain of G. sulfurreducens reduces poorly crystalline Fe(III) oxide more rapidly than the more extensively studied DL-1 strain. Deletion of the gene encoding PilA, the structural pilin protein, in strain KN400 inhibited Fe(III) oxide reduction. However, low rates of Fe(III) reduction were detected after extended incubation (>30 days) in the presence of Fe(III) oxide. After seven consecutive transfers, the PilA-deficient strain adapted to reduce Fe(III) oxide as fast as the wild type. Microarray, whole-genome resequencing, proteomic, and gene deletion studies indicated that this adaptation was associated with the production of larger amounts of the c-type cytochrome PgcA, which was released into the culture medium. It is proposed that the extracellular cytochrome acts as an electron shuttle, promoting electron transfer from the outer cell surface to Fe(III) oxides. The adapted PilA-deficient strain competed well with the wild-type strain when both were grown together on Fe(III) oxide. However, when 50% of the culture medium was replaced with fresh medium every 3 days, the wild-type strain outcompeted the adapted strain. A possible explanation for this is that the necessity to produce additional PgcA, to replace the PgcA being continually removed, put the adapted strain at a competitive disadvantage, similar to the apparent selection against electron shuttle-producing Fe(III) reducers in many anaerobic soils and sediments. Despite increased extracellular cytochrome production, the adapted PilA-deficient strain produced low levels of current, consistent with the concept that long-range electron transport through G. sulfurreducens biofilms is more effective via pili.

  7. [Element Sulfur Autotrophic Denitrification Combined Anaerobic Ammonia Oxidation].

    Science.gov (United States)

    Zhou, Jian; Huang, Yong; Liu, Xin; Yuan, Yi; Li Xiang; Wangyan, De-qing; Ding, Liang; Shao, Jing-wei; Zhao, Rong

    2016-03-15

    A novel element sulfur autotrophic denitrification combined anaerobic ammonia oxidation process, reacted in CSTR, was used to investigate the sulfate production and alkalinity consumption during the whole process. The element sulfur dosage was 50 g · L⁻¹. The inoculation volume of ANAMMOX granular sludge was 100 g · L⁻¹. The agitation rate and environment reaction temperature of the CSTR were set to 120 r · min⁻¹ and 35°C ± 0.5°C, respectively. The pH of influent was maintained in range of 8. 0-8. 4. During the start-up stage of sulfur based autotrophic denitrification, the nitrogen removal loading rate could reach 0.56-0.71 kg · (m³ · d) ⁻¹ in the condition of 5.3 h hydrogen retention time and 200 mg · L⁻¹ nitrate nitrogen. After the addition of 60 mg · L⁻¹ ammonia nitrogen, Δn(SO₄²⁻):Δn(NO₃⁻) decreased from 1.21 ± 0.06 to 1.01 ± 0.10, Δ(IC): Δ(NO₃⁻-N) decreased from 0.72 ± 0.1 to 0.51 ± 0.11, and the effluent pH increased from 6.5 to 7.2. During the combined stage, the ammonia concentration of effluent was 10.1-19.2 mg · L⁻¹, and the nitrate-nitrogen removal loading rate could be maintained in range of 0.66-0.88 kg · (m³ · d)⁻¹. The Δn (NH₄⁺): Δn (NO₃⁻) ratio reached 0.43, and the NO₃⁻ removal rate was increased by 60% in the simultaneous ammonia and nitrate removal reaction under the condition of G(T) = 22-64 s⁻¹ and pH = 8.08, while improper conditions reduced the efficiency of simultaneous reaction.

  8. Molecular Underpinnings of Fe(III Oxide Reduction by Shewanella oneidensis MR-1

    Directory of Open Access Journals (Sweden)

    Liang eShi

    2012-02-01

    Full Text Available In the absence of O2 and other electron acceptors, the Gram-negative bacterium Shewanella oneidensis MR-1 can use ferric [Fe(III] (oxy(hydroxide minerals as the terminal electron acceptors for anaerobic respiration. At circumneutral pH and in the absence of strong complexing ligands, Fe(III oxides are relatively insoluble and thus are external to the bacterial cells. S. oneidensis MR-1 has evolved the machinery (i.e., metal-reducing or Mtr pathway for transferring electrons across the entire cell envelope to the surface of extracellular Fe(III oxides. The protein components identified to date for the Mtr pathway include CymA, MtrA, MtrB, MtrC and OmcA. CymA is an inner-membrane tetraheme c-type cytochrome (c-Cyt that is proposed to oxidize the quinol in the inner-membrane and transfers the released electrons to redox proteins in the periplasm. Although the periplasmic proteins receiving electrons from CymA during Fe(III oxidation have not been identified, they are believed to relay the electrons to MtrA. A decaheme c-Cyt, MtrA is thought to be embedded in the trans outer-membrane and porin-like protein MtrB. Together, MtrAB deliver the electrons across the outer-membrane to the MtrC and OmcA on the outmost bacterial surface. Functioning as terminal reductases, the outer membrane and decaheme c-Cyts MtrC and OmcA can bind the surface of Fe(III oxides and transfer electrons directly to these minerals. To increase their reaction rates, MtrC and OmcA can use the flavins secreted by S. oneidensis MR-1 cells as diffusible co-factors for reduction of Fe(III oxides. MtrC and OmcA can also serve as the terminal reductases for soluble forms of Fe(III. Although our understanding of the Mtr pathway is still far from complete, it is the best characterized microbial pathway used for extracellular electron exchange. Characterizations of the Mtr pathway have made significant contributions to the molecular understanding of microbial reduction of Fe(III oxides.

  9. Autotrophic ammonia oxidation at low pH through urea hydrolysis.

    Science.gov (United States)

    Burton, S A; Prosser, J I

    2001-07-01

    Ammonia oxidation in laboratory liquid batch cultures of autotrophic ammonia oxidizers rarely occurs at pH values less than 7, due to ionization of ammonia and the requirement for ammonium transport rather than diffusion of ammonia. Nevertheless, there is strong evidence for autotrophic nitrification in acid soils, which may be carried out by ammonia oxidizers capable of using urea as a source of ammonia. To determine the mechanism of urea-linked ammonia oxidation, a ureolytic autotrophic ammonia oxidizer, Nitrosospira sp. strain NPAV, was grown in liquid batch culture at a range of pH values with either ammonium or urea as the sole nitrogen source. Growth and nitrite production from ammonium did not occur at pH values below 7. Growth on urea occurred at pH values in the range 4 to 7.5 but ceased when urea hydrolysis was complete, even though ammonia, released during urea hydrolysis, remained in the medium. The results support a mechanism whereby urea enters the cells by diffusion and intracellular urea hydrolysis and ammonia oxidation occur independently of extracellular pH in the range 4 to 7.5. A proportion of the ammonia produced during this process diffuses from the cell and is not subsequently available for growth if the extracellular pH is less than 7. Ureolysis therefore provides a mechanism for nitrification in acid soils, but a proportion of the ammonium produced is likely to be released from the cell and may be used by other soil organisms.

  10. Effect of oxidation rate and Fe(II) state on microbial nitrate-dependent Fe(III) mineral formation.

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    Senko, John M; Dewers, Thomas A; Krumholz, Lee R

    2005-11-01

    A nitrate-dependent Fe(II)-oxidizing bacterium was isolated and used to evaluate whether Fe(II) chemical form or oxidation rate had an effect on the mineralogy of biogenic Fe(III) (hydr)oxides resulting from nitrate-dependent Fe(II) oxidation. The isolate (designated FW33AN) had 99% 16S rRNA sequence similarity to Klebsiella oxytoca. FW33AN produced Fe(III) (hydr)oxides by oxidation of soluble Fe(II) [Fe(II)sol] or FeS under nitrate-reducing conditions. Based on X-ray diffraction (XRD) analysis, Fe(III) (hydr)oxide produced by oxidation of FeS was shown to be amorphous, while oxidation of Fe(II)sol yielded goethite. The rate of Fe(II) oxidation was then manipulated by incubating various cell concentrations of FW33AN with Fe(II)sol and nitrate. Characterization of products revealed that as Fe(II) oxidation rates slowed, a stronger goethite signal was observed by XRD and a larger proportion of Fe(III) was in the crystalline fraction. Since the mineralogy of Fe(III) (hydr)oxides may control the extent of subsequent Fe(III) reduction, the variables we identify here may have an effect on the biogeochemical cycling of Fe in anoxic ecosystems.

  11. Microbial Fe(III) oxide reduction potential in Chocolate Pots hot spring, Yellowstone National Park.

    Science.gov (United States)

    Fortney, N W; He, S; Converse, B J; Beard, B L; Johnson, C M; Boyd, E S; Roden, E E

    2016-05-01

    Chocolate Pots hot springs (CP) is a unique, circumneutral pH, iron-rich, geothermal feature in Yellowstone National Park. Prior research at CP has focused on photosynthetically driven Fe(II) oxidation as a model for mineralization of microbial mats and deposition of Archean banded iron formations. However, geochemical and stable Fe isotopic data have suggested that dissimilatory microbial iron reduction (DIR) may be active within CP deposits. In this study, the potential for microbial reduction of native CP Fe(III) oxides was investigated, using a combination of cultivation dependent and independent approaches, to assess the potential involvement of DIR in Fe redox cycling and associated stable Fe isotope fractionation in the CP hot springs. Endogenous microbial communities were able to reduce native CP Fe(III) oxides, as documented by most probable number enumerations and enrichment culture studies. Enrichment cultures demonstrated sustained DIR driven by oxidation of acetate, lactate, and H2 . Inhibitor studies and molecular analyses indicate that sulfate reduction did not contribute to observed rates of DIR in the enrichment cultures through abiotic reaction pathways. Enrichment cultures produced isotopically light Fe(II) during DIR relative to the bulk solid-phase Fe(III) oxides. Pyrosequencing of 16S rRNA genes from enrichment cultures showed dominant sequences closely affiliated with Geobacter metallireducens, a mesophilic Fe(III) oxide reducer. Shotgun metagenomic analysis of enrichment cultures confirmed the presence of a dominant G. metallireducens-like population and other less dominant populations from the phylum Ignavibacteriae, which appear to be capable of DIR. Gene (protein) searches revealed the presence of heat-shock proteins that may be involved in increased thermotolerance in the organisms present in the enrichments as well as porin-cytochrome complexes previously shown to be involved in extracellular electron transport. This analysis offers

  12. Evidence for the Existence of Autotrophic Nitrate-Reducing Fe(II)-Oxidizing Bacteria in Marine Coastal Sediment.

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    Laufer, Katja; Røy, Hans; Jørgensen, Bo Barker; Kappler, Andreas

    2016-10-15

    Nitrate-reducing Fe(II)-oxidizing microorganisms were described for the first time ca. 20 years ago. Most pure cultures of nitrate-reducing Fe(II) oxidizers can oxidize Fe(II) only under mixotrophic conditions, i.e., when an organic cosubstrate is provided. A small number of nitrate-reducing Fe(II)-oxidizing cultures have been proposed to grow autotrophically, but unambiguous evidence for autotrophy has not always been provided. Thus, it is still unclear whether or to what extent Fe(II) oxidation coupled to nitrate reduction is an enzymatically catalyzed and energy-yielding autotrophic process or whether Fe(II) is abiotically oxidized by nitrite from heterotrophic nitrate reduction. The aim of the present study was to find evidence for the existence of autotrophic nitrate-reducing Fe(II) oxidizers in coastal marine sediments. Microcosm incubations showed that with increasing incubation times, the stoichiometric ratio of reduced nitrate/oxidized Fe(II) [NO3(-)reduced/Fe(II)oxidized] decreased, indicating a decreasing contribution of heterotrophic denitrification and/or an increasing contribution of autotrophic nitrate-reducing Fe(II) oxidation over time. After incubations of sediment slurries for >10 weeks, nitrate-reducing activity ceased, although nitrate was still present. This suggests that heterotrophic nitrate reduction had ceased due to the depletion of readily available organic carbon. However, after the addition of Fe(II) to these batch incubation mixtures, the nitrate-reducing activity resumed, and Fe(II) was oxidized, indicating the activity of autotrophic nitrate-reducing Fe(II) oxidizers. The concurrent reduction of (14)C-labeled bicarbonate concentrations unambiguously proved that autotrophic C fixation occurred during Fe(II) oxidation and nitrate reduction. Our results clearly demonstrated that autotrophic nitrate-reducing Fe(II)-oxidizing bacteria were present in the investigated coastal marine sediments.

  13. The abundance and diversity of ammonia-oxidizing bacteria in activated sludge under autotrophic domestication.

    Science.gov (United States)

    Li, Qiang; Ma, Chao; Sun, Shifang; Xie, Hui; Zhang, Wei; Feng, Jun; Song, Cunjiang

    2013-04-01

    Ammonia-oxidizing bacteria (AOB) play a key role in nitrogen-removal wastewater treatment plants (WWTPs) as they can transform ammonia into nitrite. AOB can be enriched in activated sludge through autotrophic domestication although they are difficult to be isolated. In this study, autotrophic domestication was carried out in a lab-scale sequencing-batch-reactor (SBR) system with two activated sludge samples. The ammonia removal capacity of the sludge samples increased during the domestication, and pH exhibited a negative correlation with the ammonia removal amount, which indicated that it was one important factor of microbial ammonia oxidation. The count of AOB, measured by the most probable number (MPN) method, increased significantly during autotrophic domestication as ammonia oxidation efficiency was enhanced. We investigated the changes in the community structure of AOB before and after domestication by amoA clone library and T-RFLP profile. It showed that AOB had been successfully enriched and the community structure significantly shifted during the domestication. Two groups of AOB were found in sludge samples: Nitrosomonas-like group remained predominant all the time and Nitrosospira-like group changed obviously. Simultaneously, the total heterotrophic bacteria were investigated by MPN and Biolog assay. The metabolic diversity of heterotrophs had changed minutely, although the count of them decreased significantly and lost superiority of microbial communities in the sludge.

  14. The life cycle of iron Fe(III) oxide: impact of fungi and bacteria

    Science.gov (United States)

    Bonneville, Steeve

    2014-05-01

    Iron oxides are ubiquitous reactive constituents of soils, sediments and aquifers. They exhibit vast surface areas which bind a large array of trace metals, nutrients and organic molecules hence controlling their mobility/reactivity in the subsurface. In this context, understanding the "life cycle" of iron oxide in soils is paramount to many biogeochemical processes. Soils environments are notorious for their extreme heterogeneity and variability of chemical, physical conditions and biological agents at play. Here, we present studies investigating the role of two biological agents driving iron oxide dynamics in soils, root-associated fungi (mycorrhiza) and bacteria. Mycorrhiza filaments (hypha) grow preferentially around, and on the surface of nutrient-rich minerals, making mineral-fungi contact zones, hot-spots of chemical alteration in soils. However, because of the microscopic nature of hyphae (only ~ 5 µm wide for up to 1 mm long) and their tendency to strongly adhere to mineral surface, in situ observations of this interfacial micro-environment are scarce. In a microcosm, ectomycorrhiza (Paxillus involutus) was grown symbiotically with a pine tree (Pinus sylvestris) in the presence of freshly-cleaved biotite under humid, yet undersaturated, conditions typical of soils. Using spatially-resolved ion milling technique (FIB), transmission electron microscopy and spectroscopy (TEM/STEM-EDS), synchrotron based X-ray microscopy (STXM), we were able to quantify the speciation of Fe at the biotite-hypha interface. The results shows that substantial oxidation of biotite structural-Fe(II) into Fe(III) subdomains occurs at the contact zone between mycorrhiza and biotite. Once formed, iron(III) oxides can reductively dissolve under suboxic conditions via several abiotic and microbial pathways. In particular, they serve as terminal electron acceptors for the oxidation of organic matter by iron reducing bacteria. We aimed here to understand the role of Fe(III) mineral

  15. Mechanisms for Electron Transfer Through Pili to Fe(III) Oxide in Geobacter

    Energy Technology Data Exchange (ETDEWEB)

    Lovley, Derek R. [Univ. of Massachusetts, Amherst, MA (United States)

    2015-03-09

    The purpose of these studies was to aid the Department of Energy in its goal of understanding how microorganisms involved in the bioremediation of metals and radionuclides sustain their activity in the subsurface. This information is required in order to incorporate biological processes into decision making for environmental remediation and long-term stewardship of contaminated sites. The proposed research was designed to elucidate the mechanisms for electron transfer to Fe(III) oxides in Geobacter species because Geobacter species are abundant dissimilatory metal-reducing microorganisms in a diversity of sites in which uranium is undergoing natural attenuation via the reduction of soluble U(VI) to insoluble U(IV) or when this process is artificially stimulated with the addition of organic electron donors. This study investigated the novel, but highly controversial, concept that the final conduit for electron transfer to Fe(III) oxides are electrically conductive pili. The specific objectives were to: 1) further evaluate the conductivity along the pili of Geobacter sulfurreducens and related organisms; 2) determine the mechanisms for pili conductivity; and 3) investigate the role of pili in Fe(III) oxide reduction. The studies demonstrated that the pili of G. sulfurreducens are conductive along their length. Surprisingly, the pili possess a metallic-like conductivity similar to that observed in synthetic organic conducting polymers such as polyaniline. Detailed physical analysis of the pili, as well as studies in which the structure of the pili was genetically modified, demonstrated that the metallic-like conductivity of the pili could be attributed to overlapping pi-pi orbitals of aromatic amino acids. Other potential mechanisms for conductivity, such as electron hopping between cytochromes associated with the pili were definitively ruled out. Pili were also found to be essential for Fe(III) oxide reduction in G. metallireducens. Ecological studies demonstrated

  16. Nitrogen removal by autotrophic ammonium oxidizing bacteria enrichment under anaerobic conditions

    Directory of Open Access Journals (Sweden)

    Pongsak (Lek Noophan

    2008-07-01

    Full Text Available Sludge from an anoxic tank at the centralized wastewater treatment plant, Nong Khaem, Bangkok, Thailand, was inoculatedin an anaerobic sequencing batch reactor (ASBR. The optimal compositions and operating conditions of the stock of autotrophic ammonium oxidizing bacteria medium were determined. The process of oxidizing ammonium with bacteria under anaerobic conditions is often referred to as the Anammox process (NO2- to N2 gas, using NH4+ as the electron donor and NO2- as the electron acceptor. The startup period for the anammox culture took more than three months. With ammoniumand nitrite concentration ratios of 1:1.38 and 1:1.6, the nitrogen conversion rate zero order. Fluorescent in situ hybridization(FISH was used to identify specific autotrophic ammonium oxidizing bacteria (Nitrosomonas spp., Candidatus Brocadia anammoxidans, and Candidatus Kuenenia stuttgartiensis. Results from this work demonstrated a shift in the species of ammonium oxidizing bacteria from Nitrosomonas spp. to Candidati Brocadia anammoxidans and Kuenenia stuttgartiensis, with increased ammonium concentrations from 3 mM to 15 mM. Under NH4+:NO2- ratios of 1:1.38 and 1:1.6 the ammoniumoxidizing bacteria were able to remove both ammonium and nitrite simultaneously. The specific nitrogen removal rate of theanammox bacteria (Candidati Brocadia anammoxidans and Kuenenia stuttgartiensis was significantly higher than that of anaerobic ammonium oxidizing bacteria (Nitrosomonas spp.. Anaerobic ammonium oxidizing bacteria (Candidati Brocadia anammoxidans and Kuenenia stuttgartiensis are strict anaerobes.

  17. Microbial Fe(III) Oxide Reduction in Chocolate Pots Hot Springs, Yellowstone National Park

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    Fortney, N. W.; Roden, E. E.; Boyd, E. S.; Converse, B. J.

    2014-12-01

    Previous work on dissimilatory iron reduction (DIR) in Yellowstone National Park (YNP) has focused on high temperature, low pH environments where soluble Fe(III) is utilized as an electron acceptor for respiration. Much less attention has been paid to DIR in lower temperature, circumneutral pH environments, where solid phase Fe(III) oxides are the dominant forms of Fe(III). This study explored the potential for DIR in the warm (ca. 40-50°C), circumneutral pH Chocolate Pots hot springs (CP) in YNP. Most probable number (MPN) enumerations and enrichment culture studies confirmed the presence of endogenous microbial communities that reduced native CP Fe(III) oxides. Enrichment cultures demonstrated sustained DIR coupled to acetate and lactate oxidation through repeated transfers over ca. 450 days. Pyrosequencing of 16S rRNA genes indicated that the dominant organisms in the enrichments were closely affiliated with the well known Fe(III) reducer Geobacter metallireducens. Additional taxa included relatives of sulfate reducing bacterial genera Desulfohalobium and Thermodesulfovibrio; however, amendment of enrichments with molybdate, an inhibitor of sulfate reduction, suggested that sulfate reduction was not a primary metabolic pathway involved in DIR in the cultures. A metagenomic analysis of enrichment cultures is underway in anticipation of identifying genes involved in DIR in the less well-characterized dominant organisms. Current studies are aimed at interrogating the in situ microbial community at CP. Core samples were collected along the flow path (Fig. 1) and subdivided into 1 cm depth intervals for geochemical and microbiological analysis. The presence of significant quantities of Fe(II) in the solids indicated that DIR is active in situ. A parallel study investigated in vitro microbial DIR in sediments collected from three of the coring sites. DNA was extracted from samples from both studies for 16S rRNA gene and metagenomic sequencing in order to obtain a

  18. Signatures of Autotrophic and Heterotrophic Metabolic Activity in Enrichment Cultures from a Sulphur Oxidizing Acid Mine Site

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    Slater, G. F.; Bernier, L.; Cowie, B. R.; Warren, L. A.

    2006-12-01

    Delineating the role of microorganisms in geochemical processes of interest in natural environments requires the development of tools that provide the ability to distinguish amongst microbial activity associated with different metabolic guilds. The gap between phylogenetic characterization and phenotypic understanding remains, underscoring the need to consider alternative methods. Compound specific analysis of cellular components has the potential to differentiate between active metabolic processes supporting microbial communities and may be especially useful in extreme environments. The goal of this study was to determine whether the phospholipids fatty acid (PLFA) distribution and isotopic signatures associated with autotrophs and heterotrophs enriched from an acid mine drainage (AMD) system differed, and further whether natural consortial autotrophic isolates showed similar signatures to autotrophic pure strains of Acidithiobacillus ferrooxidans and A. thiooxidans. Two distinct initial enrichments with tetrathionate and CO2 yielded primarily autotrophic (95%) Acidithiobaccillus spp. sulphur oxidizing communities. The remaining microbial members of theses enrichments (subculture of the consortial isolates in a medium amended with glucose but without tetrathionate selectively resulted in their visible growth. PLFA profiles and δ13C signatures from autotrophic (1) natural enrichments, pure cultures of (2) A. ferrooxidans and (3) A. thiooxidans were similar, but collectively differed from those of the natural heterotrophic enrichment cultures. The PLFA profiles for the heterotrophic communities were made up of primarily (88-99%) C16:0 and two isomers of C18:1. In contrast, the autotrophic communities had high proportions of C16:1 (up to 18%) as well as cyclo C17 and cyclo C19 PLFA that combined comprised 18 to 58% of the observed PLFA. The δ13C signatures of the PLFA also differed strongly between the two trophic levels. The δ13C of the autotrophic PLFA, - 24 to

  19. Proteins involved in electron transfer to Fe(III) and Mn(IV) oxides by Geobacter sulfurreducens and Geobacter uraniireducens.

    Science.gov (United States)

    Aklujkar, M; Coppi, M V; Leang, C; Kim, B C; Chavan, M A; Perpetua, L A; Giloteaux, L; Liu, A; Holmes, D E

    2013-03-01

    Whole-genome microarray analysis of Geobacter sulfurreducens grown on insoluble Fe(III) oxide or Mn(IV) oxide versus soluble Fe(III) citrate revealed significantly different expression patterns. The most upregulated genes, omcS and omcT, encode cell-surface c-type cytochromes, OmcS being required for Fe(III) and Mn(IV) oxide reduction. Other electron transport genes upregulated on both metal oxides included genes encoding putative menaquinol : ferricytochrome c oxidoreductase complexes Cbc4 and Cbc5, periplasmic c-type cytochromes Dhc2 and PccF, outer membrane c-type cytochromes OmcC, OmcG and OmcV, multicopper oxidase OmpB, the structural components of electrically conductive pili, PilA-N and PilA-C, and enzymes that detoxify reactive oxygen/nitrogen species. Genes upregulated on Fe(III) oxide encode putative menaquinol : ferricytochrome c oxidoreductase complexes Cbc3 and Cbc6, periplasmic c-type cytochromes, including PccG and PccJ, and outer membrane c-type cytochromes, including OmcA, OmcE, OmcH, OmcL, OmcN, OmcO and OmcP. Electron transport genes upregulated on Mn(IV) oxide encode periplasmic c-type cytochromes PccR, PgcA, PpcA and PpcD, outer membrane c-type cytochromes OmaB/OmaC, OmcB and OmcZ, multicopper oxidase OmpC and menaquinone-reducing enzymes. Genetic studies indicated that MacA, OmcB, OmcF, OmcG, OmcH, OmcI, OmcJ, OmcM, OmcV and PccH, the putative Cbc5 complex subunit CbcC and the putative Cbc3 complex subunit CbcV are important for reduction of Fe(III) oxide but not essential for Mn(IV) oxide reduction. Gene expression patterns for Geobacter uraniireducens were similar. These results demonstrate that the physiology of Fe(III)-reducing bacteria differs significantly during growth on different insoluble and soluble electron acceptors and emphasize the importance of c-type cytochromes for extracellular electron transfer in G. sulfurreducens.

  20. Effects of microbial iron reduction and oxidation on the immobilization and mobilization of copper in synthesized Fe(III) minerals and Fe-rich soils.

    Science.gov (United States)

    Hu, Chaohua; Zhang, Youchi; Zhang, Lei; Luo, Wensui

    2014-04-01

    The effects of microbial iron reduction and oxidation on the immobilization and mobilization of copper were investigated in a high concentration of sulfate with synthesized Fe(III) minerals and red earth soils rich in amorphous Fe (hydr)oxides. Batch microcosm experiments showed that red earth soil inoculated with subsurface sediments had a faster Fe(III) bioreduction rate than pure amorphous Fe(III) minerals and resulted in quicker immobilization of Cu in the aqueous fraction. Coinciding with the decrease of aqueous Cu, SO4(2-) in the inoculated red earth soil decreased acutely after incubation. The shift in the microbial community composite in the inoculated soil was analyzed through denaturing gradient gel electrophoresis. Results revealed the potential cooperative effect of microbial Fe(III) reduction and sulfate reduction on copper immobilization. After exposure to air for 144 h, more than 50% of the immobilized Cu was remobilized from the anaerobic matrices; aqueous sulfate increased significantly. Sequential extraction analysis demonstrated that the organic matter/sulfide-bound Cu increased by 52% after anaerobic incubation relative to the abiotic treatment but decreased by 32% after oxidation, indicating the generation and oxidation of Cu-sulfide coprecipitates in the inoculated red earth soil. These findings suggest that the immobilization of copper could be enhanced by mediating microbial Fe(III) reduction with sulfate reduction under anaerobic conditions. The findings have an important implication for bioremediation in Cucontaminated and Fe-rich soils, especially in acid-mine-drainage-affected sites.

  1. Dissimilatory reduction of FeIII (EDTA) with microorganisms in the system of nitric oxide removal from the flue gas by metal chelate absorption

    Institute of Scientific and Technical Information of China (English)

    MA Bi-yao; LI Wei; JING Guo-hua; SHI Yao

    2004-01-01

    In the system of nitric oxide removal from the flue gas by metal chelate absorption, it is an obstacle that ferrous absorbents are easily oxidized by oxygen in the flue gas to ferric counterparts, which are not capable of binding NO. By adding iron metal or electrochemical method, FeIII (EDTA) can be reduced to FeII (EDTA). However, there are various drawbacks associated with these techniques. The dissimilatory reduction of FeIII (EDTA) with microorganisms in the system of nitric oxide removal by metal chelate absorption was investigated. Ammonium salt instead of nitrate was used as the nitrogen source, as nitrates inhibited the reduction of FeIII due to the competition between the two electron acceptors. Supplemental glucose and lactate stimulated the formation of FeII more than ethanol as the carbon sources. The microorganisms cultured at 50℃ were not very sensitive to the other experimental temperature, the reduction percentage of FeIII varied little with the temperature range of 30~50℃. Concentrated Na2CO3 solution was added to adjust the solution pH to an optimal pH range of 6~7. The overall results revealed that the dissimilatory ferric reducing microorganisms present in the mix-culture are probably neutrophilic, moderately thermophilic FeIII reducers.

  2. Nanostructured Fe(III) catalysts for water oxidation assembled with the aid of organic acid salt electrolytes

    Science.gov (United States)

    Zhao, Qiang; Li, Dandan; Gao, Guofeng; Yuan, Wen; Hao, Genyan; Li, Jinping

    2016-11-01

    We describe the preparation of three partially ordered iron-based catalyst films (Fe-OAc, Fe-Pro, Fe-But) with nanoporous structure by electrodeposition from organate electrolytes containing Fe2+. The anions of the organic acids assisted the partial ordering of the nanostructured Fe(III) catalysts for water oxidation. A model involving an electrical double layer is invoked to explain the role of the organate electrolyte system in their formation. Analytical results have revealed the main component of the iron-based films to be a β-FeOOH structure. The Fe-But catalyst catalyzed water oxidation in 0.1 m potassium carbonate solution with an average activity of 1.48 mA cm-2 and an overpotential of 433 mV.

  3. Nanowires, Capacitors, and Other Novel Outer-Surface Components Involved in Electron Transfer to Fe(III) Oxides in Geobacter Species

    Energy Technology Data Exchange (ETDEWEB)

    Lovley, Derek, R.

    2008-12-22

    The overall goal of this project was to better understand the mechanisms by which Geobacter species transfer electrons outside the cell onto Fe(III) oxides. The rationale for this study was that Geobacter species are often the predominant microorganisms involved in in situ uranium bioremediation and the growth and activity of the Geobacter species during bioremediation is primarily supported by electron transfer to Fe(III) oxides. These studies greatly expanded the understanding of electron transfer to Fe(III). Novel concepts developed included the potential role of microbial nanowires for long range electron transfer in Geobacter species and the importance of extracytoplasmic cytochromes functioning as capacitors to permit continued electron transfer during the hunt for Fe(III) oxide. Furthermore, these studies provided target sequences that were then used in other studies to tract the activity of Geobacter species in the subsurface through monitoring the abundance of gene transcripts of the target genes. A brief summary of the major accomplishments of the project is provided.

  4. Respiratory Ammonification of Nitrate Coupled to Anaerobic Oxidation of Elemental Sulfur in Deep-Sea Autotrophic Thermophilic Bacteria

    Science.gov (United States)

    Slobodkina, Galina B.; Mardanov, Andrey V.; Ravin, Nikolai V.; Frolova, Anastasia A.; Chernyh, Nikolay A.; Bonch-Osmolovskaya, Elizaveta A.; Slobodkin, Alexander I.

    2017-01-01

    Respiratory ammonification of nitrate is the microbial process that determines the retention of nitrogen in an ecosystem. To date, sulfur-dependent dissimilatory nitrate reduction to ammonium has been demonstrated only with sulfide as an electron donor. We detected a novel pathway that couples the sulfur and nitrogen cycles. Thermophilic anaerobic bacteria Thermosulfurimonas dismutans and Dissulfuribacter thermophilus, isolated from deep-sea hydrothermal vents, grew autotrophically with elemental sulfur as an electron donor and nitrate as an electron acceptor producing sulfate and ammonium. The genomes of both bacteria contain a gene cluster that encodes a putative nitrate ammonification enzyme system. Nitrate reduction occurs via a Nap-type complex. The reduction of produced nitrite to ammonium does not proceed via the canonical Nrf system because nitrite reductase NrfA is absent in the genomes of both microorganisms. The genome of D. thermophilus encodes a complete sulfate reduction pathway, while the Sox sulfur oxidation system is missing, as shown previously for T. dismutans. Thus, in high-temperature environments, nitrate ammonification with elemental sulfur may represent an unrecognized route of primary biomass production. Moreover, the anaerobic oxidation of sulfur compounds coupled to growth has not previously been demonstrated for the members of Thermodesulfobacteria or Deltaproteobacteria, which were considered exclusively as participants of the reductive branch of the sulfur cycle. PMID:28194142

  5. Autotrophic nitrogen assimilation and carbon capture for microbial protein production by a novel enrichment of hydrogen-oxidizing bacteria.

    Science.gov (United States)

    Matassa, Silvio; Verstraete, Willy; Pikaar, Ilje; Boon, Nico

    2016-09-15

    Domestic used water treatment systems are currently predominantly based on conventional resource inefficient treatment processes. While resource recovery is gaining momentum it lacks high value end-products which can be efficiently marketed. Microbial protein production offers a valid and promising alternative by upgrading low value recovered resources into high quality feed and also food. In the present study, we evaluated the potential of hydrogen-oxidizing bacteria to upgrade ammonium and carbon dioxide under autotrophic growth conditions. The enrichment of a generic microbial community and the implementation of different culture conditions (sequenced batch resp. continuous reactor) revealed surprising features. At low selection pressure (i.e. under sequenced batch culture at high solid retention time), a very diverse microbiome with an important presence of predatory Bdellovibrio spp. was observed. The microbial culture which evolved under high rate selection pressure (i.e. dilution rate D = 0.1 h(-1)) under continuous reactor conditions was dominated by Sulfuricurvum spp. and a highly stable and efficient process in terms of N and C uptake, biomass yield and volumetric productivity was attained. Under continuous culture conditions the maximum yield obtained was 0.29 g cell dry weight per gram chemical oxygen demand equivalent of hydrogen, whereas the maximum volumetric loading rate peaked 0.41 g cell dry weight per litre per hour at a protein content of 71%. Finally, the microbial protein produced was of high nutritive quality in terms of essential amino acids content and can be a suitable substitute for conventional feed sources such as fishmeal or soybean meal.

  6. Simultaneous heterotrophic and sulfur-oxidizing autotrophic denitrification process for drinking water treatment: control of sulfate production.

    Science.gov (United States)

    Sahinkaya, Erkan; Dursun, Nesrin; Kilic, Adem; Demirel, Sevgi; Uyanik, Sinan; Cinar, Ozer

    2011-12-15

    A long-term performance of a packed-bed bioreactor containing sulfur and limestone was evaluated for the denitrification of drinking water. Autotrophic denitrification rate was limited by the slow dissolution rate of sulfur and limestone. Dissolution of limestone for alkalinity supplementation increased hardness due to release of Ca(2+). Sulfate production is the main disadvantage of the sulfur autotrophic denitrification process. The effluent sulfate concentration was reduced to values below drinking water guidelines by stimulating the simultaneous heterotrophic and autotrophic denitrification with methanol supplementation. Complete removal of 75 mg/L NO(3)-N with effluent sulfate concentration of around 225 mg/L was achieved when methanol was supplemented at methanol/NO(3)-N ratio of 1.67 (mg/mg), which was much lower than the theoretical value of 2.47 for heterotrophic denitrification. Batch studies showed that sulfur-based autotrophic NO(2)-N reduction rate was around three times lower than the reduction rate of NO(3)-N, which led to NO(2)-N accumulation at high loadings.

  7. Autotrophic Biofilters for Oxidation of Nitric Oxide%自养型生物过滤器硝化氧化一氧化氮

    Institute of Scientific and Technical Information of China (English)

    陈建孟; 陈浚; L.Hershman; 王家德; D.P.Y.Chang

    2004-01-01

    Carbon foam-a kind of new engineering material as packing material was adopted in three biofilters with different pore dimensions and adapted autotrophic nitrite nitrobacteria to investigate the purification of nitric oxide (NO) in a gas stream. The biofilm was developed on the surface of carbon foams using nitrite as its only nitric source. The moisture in the filter was maintained by ultrasonic aerosol equipment which can minimize the thickness of the liquid film. The liquid phase nitrification test was conducted to determine the variability and the potential of performance among the three carbon foam biofilters. The investigation showed that during the NO-2-N inlet concentration of 200 g-L-1 .min-1 to 800 g-L-1 .min-1, the 24PPC (pores per centimeter) carbon foam biofilter had the greatest potential, achieving the NO-2-N removal efficiency of 94% to 98%. The 8PPC and 18PPC carbon foam biofilters achieved the NO-2-N removal efficiency of 15% to 21% and of 30% to 40%, respectively. The potential for this system to remove NO from a gas stream was shown on the basis of a steady removal efficiency of 41% to 50% which was attained for the 24PPC carbon foam biofilter at specified NO inlet concentration of 66.97mg.m-3to 267.86 mg.m-3 and an empty-bed residence time of 3.5 min.

  8. A Geobacter sulfurreducens strain expressing pseudomonas aeruginosa type IV pili localizes OmcS on pili but is deficient in Fe(III) oxide reduction and current production.

    Science.gov (United States)

    Liu, Xing; Tremblay, Pier-Luc; Malvankar, Nikhil S; Nevin, Kelly P; Lovley, Derek R; Vargas, Madeline

    2014-02-01

    The conductive pili of Geobacter species play an important role in electron transfer to Fe(III) oxides, in long-range electron transport through current-producing biofilms, and in direct interspecies electron transfer. Although multiple lines of evidence have indicated that the pili of Geobacter sulfurreducens have a metal-like conductivity, independent of the presence of c-type cytochromes, this claim is still controversial. In order to further investigate this phenomenon, a strain of G. sulfurreducens, designated strain PA, was constructed in which the gene for the native PilA, the structural pilin protein, was replaced with the PilA gene of Pseudomonas aeruginosa PAO1. Strain PA expressed and properly assembled P. aeruginosa PilA subunits into pili and exhibited a profile of outer surface c-type cytochromes similar to that of a control strain expressing the G. sulfurreducens PilA. Surprisingly, the strain PA pili were decorated with the c-type cytochrome OmcS in a manner similar to the control strain. However, the strain PA pili were 14-fold less conductive than the pili of the control strain, and strain PA was severely impaired in Fe(III) oxide reduction and current production. These results demonstrate that the presence of OmcS on pili is not sufficient to confer conductivity to pili and suggest that there are unique structural features of the G. sulfurreducens PilA that are necessary for conductivity.

  9. Green oxidation of alkenes in ionic liquid solvent by hydrogen peroxide over high performance Fe(III) Schiff base complexes immobilized on MCM-41

    Indian Academy of Sciences (India)

    Mohammad Taghi Goldani; Ali Mohammadi; Reza Sandaroos

    2014-05-01

    A series of Fe(III) Schiff base complexes immobilized on MCM-41 were prepared and characterized by various physicochemical and spectroscopic methods. The complexes were used for oxidation of cyclohexene by 30% hydrogen peroxide in the presence and absence of ethylmethyl imidazolium chloride (EMIM) ionic liquid as solvent. The immobilized complexes proved to be effective catalysts and generally exhibited much higher catalytic performance than their homogeneous analogue. Catalytic performance of the complexes was also found to be closely related to the Schiff base ligands used. Additionally, ion liquid solvent efficiently improved all the catalytic performances. Finally, the reaction was extended to different alkenes using the heterogeneous complex 2-L4. Among all the alkenes, those containing -electron-withdrawing groups and trans-orientations exhibited lower tendency for oxidation.

  10. Zeolite-Y entrapped Ru(III and Fe(III complexes as heterogeneous catalysts for catalytic oxidation of cyclohexane reaction

    Directory of Open Access Journals (Sweden)

    Chetan K. Modi

    2017-02-01

    Full Text Available Catalysis is probably one of the greatest contributions of chemistry to both economic growth and environmental protection. Herein we report the catalytic behavior of zeolite-Y entrapped Ru(III and Fe(III complexes with general formulae [M(VTCH2·2H2O]+-Y and [M(VFCH2·2H2O]+-Y [where, VTCH = vanillin thiophene-2-carboxylic hydrazone and VFCH = vanillin furoic-2-carboxylic hydrazone] over the oxidation of cyclohexane forming cyclohexanone and cyclohexanol. The samples were corroborated by various physico-chemical techniques. These zeolite-Y based complexes are stable and recyclable under current reaction conditions. Amongst them, [Ru(VTCH2⋅2H2O]+-Y showed higher catalytic activity (41.1% with cyclohexanone (84.6% selectivity.

  11. Selective isolation of ammonia-oxidizing bacteria from autotrophic nitrifying granules by applying cell-sorting and sub-culturing of microcolonies.

    Science.gov (United States)

    Fujitani, Hirotsugu; Kumagai, Asami; Ushiki, Norisuke; Momiuchi, Kengo; Tsuneda, Satoshi

    2015-01-01

    Nitrification is a key process in the biogeochemical nitrogen cycle and biological wastewater treatment that consists of two stepwise reactions, ammonia oxidation by ammonia-oxidizing bacteria (AOB) or archaea followed by nitrite oxidation by nitrite-oxidizing bacteria. One of the representatives of the AOB group is Nitrosomonas mobilis species. Although a few pure strains of this species have been isolated so far, approaches to their preservation in pure culture have not been established. Here, we report isolation of novel members of the N. mobilis species from autotrophic nitrifying granules used for ammonia-rich wastewater treatment. We developed an isolation method focusing on microcolonies formation of nitrifying bacteria. Two kinds of distinctive light scattering signatures in a cell-sorting system enabled to separate microcolonies from single cells and heterogeneous aggregates within granule samples. Inoculation of a pure microcolony into 96-well microtiter plates led to successful sub-culturing and increased probability of isolation. Obtained strain Ms1 is cultivated in the liquid culture with relatively high ammonia or nitrite concentration, not extremely slow growing. Considering environmental clones that were closely related to N. mobilis and detected in various environments, the availability of this novel strain would facilitate to reveal this member's ecophysiology in a variety of habitats.

  12. Selective isolation of ammonia-oxidizing bacteria from autotrophic nitrifying granules by applying cell-sorting and sub-culturing of microcolonies

    Directory of Open Access Journals (Sweden)

    Hirotsugu eFujitani

    2015-10-01

    Full Text Available Nitrification is a key process in the biogeochemical nitrogen cycle and biological wastewater treatment that consists of two stepwise reactions, ammonia oxidation by ammonia-oxidizing bacteria (AOB or archaea followed by nitrite oxidation by nitrite-oxidizing bacteria. One of the representative of the AOB group is Nitrosomonas mobilis species. Although a few pure strains of this species have been isolated so far, approaches to their preservation in pure culture have not been established. Here, we report isolation of novel members of the N. mobilis species from autotrophic nitrifying granules used for ammonia-rich wastewater treatment. We developed an isolation method focusing on microcolonies formation of nitrifying bacteria. Two kinds of distinctive light scattering signatures in a cell-sorting system enabled to separate microcolonies from single cells and heterogeneous aggregates within granule samples. Inoculation of a pure microcolony into 96-well microtiter plates led to successful sub-culturing and increased probability of isolation. Obtained strain Ms1 is cultivated in the liquid culture with relatively high ammonia or nitrite concentration, not extremely slow growing. Considering environmental clones that were closely related to N. mobilis and detected in various environments, the availability of this novel strain would facilitate to reveal this member’s ecophysiology in a variety of habitats.

  13. Adsorption of some transition metal ions (Cu(II), Fe(III), Cr(III) and Au(III)) onto lignite-based activated carbons modified by oxidation

    Energy Technology Data Exchange (ETDEWEB)

    Paunka St. Vassileva; Albena K. Detcheva [Bulgarian Academy of Sciences, Sofia (Bulgaria). Institute of General and Inorganic Chemistry

    2010-03-15

    The main purpose of the present work was to study the adsorption of some transition metal ions from aqueous solution via a novel porous material obtained from Bulgarian lignite (Chukurovo deposit) and its oxidized modifications. The adsorption of Cu(II), Fe(III), Cr(III) and Au(III) ions was investigated using batch methods to study solutions with different concentrations and acidities. It was found that the adsorption process was affected significantly by the pH value of the aqueous solution. Treatment of the equilibrium data using the linear Langmuir, Freundlich and Dubinin-Radushkevich models allowed the maximum adsorption capacities to be calculated. The uptake of Au(III) ions was almost 100% for the three adsorbents investigated, being greater than 300 mg/l and independent of the pH over the pH range studied. The initial activated carbon proved to be the most suitable for the selective adsorption of Au(III) ions from aqueous solutions in the presence of other transition metal ions, while its oxidized modification Ch-P exhibited an enhanced adsorption efficiency towards transition metals.

  14. Adsorption of Some Transition Metal Ions (Cu(II), Fe(III), Cr(III) and Au(III)) onto lignite-based activated carbons modified by oxidation

    Energy Technology Data Exchange (ETDEWEB)

    Vassileva, P.S.; Detcheva, A.K. [Bulgarian Academy of Science, Sofia (Bulgaria)

    2010-07-01

    The main purpose of the present work was to study the adsorption of some transition metal ions from aqueous solution via a novel porous material obtained from Bulgarian lignite (Chukurovo deposit) and its oxidized modifications. The adsorption of Cu(II), Fe(III), Cr(III) and Au(III) ions was investigated using batch methods to study solutions with different concentrations and acidities. It was found that the adsorption process was affected significantly by the pH value of the aqueous solution. Treatment of the equilibrium data using the linear Langmuir, Freundlich and Dubinin-Radushkevich models allowed the maximum adsorption capacities to be calculated. The uptake of Au(III) ions was almost 100% for the three adsorbents investigated, being greater than 300 mg/l and independent of the pH over the pH range studied. The initial activated carbon proved to be the most suitable for the selective adsorption of Au(III) ions from aqueous solutions in the presence of other transition metal ions, while its oxidized modification Ch-P exhibited an enhanced adsorption efficiency towards transition metals.

  15. A Mesophilic, Autotrophic, Ammonia-Oxidizing Archaeon of Thaumarchaeal Group I.1a Cultivated from a Deep Oligotrophic Soil Horizon

    NARCIS (Netherlands)

    Jung, M.Y.; Park, S.J.; Kim, S.J.; Kim, J.G.; Sinninghe Damsté, J.S.; Jeon, C.O.; Rhee, S.K.

    2014-01-01

    Soil nitrification plays an important role in the reduction of soil fertility and in nitrate enrichment of groundwater. Various ammonia- oxidizing archaea (AOA) are considered to be members of the pool of ammonia-oxidizing microorganisms in soil. This study reports the discovery of a chemolithoautot

  16. Faster autotrophic growth of anaerobic ammonium-oxidizing microorganisms in presence of nitrite, using inocula from Colombia

    Directory of Open Access Journals (Sweden)

    Jaime Sanchez

    2014-06-01

    Full Text Available Título en español: Crecimiento rápido autotrófico de microorganismos anaerobios oxidadores de amonio en presencia de nitrito, usando inóculos de ColombiaShort Title: Growth from Colombian inoculated anammoxSummary: Anammox is a nitrite dependent process, catalyzed by bacteria of the order Brocadiales. Anammox bacteria oxidize ammonia under anoxic conditions, with nitrite as electron acceptor producing dinitrogen gas. Here, we demonstrated the presence of anammox bacteria by enriched them in a SBR reactor, with anaerobic samples taken from de bottom of a pond used in primary wastewater treatment. The enrichment reached nitrogen (N removal rates of nearly 1.92kg N/m3/day. (The stoichiometry of the reaction matched previous anammox studies. The enriched bacterial communities were analyzed by Fluorescence In situ Hybridization (FISH, and showed nearly a 90% of enrichment at the end of the experiment (day 90. As far as we know, this is the first time that the anammox bacteria were enriched using Colombian inocula. The enrichment was achieved in relatively short time with high yields and has an excellent potential for application in wastewater treatment opening the opportunity to treat nitrogen-rich effluents by partial nitritation and anammox, thereby decreasing operational costs with respect to aeration (nitrification and addition of organic electron donor (heterotrophic denitrification. This more sustainable treatment is a good alternative to control nutrient pollution in water bodies in tropical countries.Key words: nitrogen cycle; advanced treatment; anammox;  nitritation; nitratation; denitrification.Resumen: La oxidación anaerobia del amonio (anammox, es un proceso nitrito dependiente, catalizado por bacterias del filo planctomicetes. Estas bacterias oxidan el amonio en ausencia de oxígeno, con nitrito como aceptor de electrones produciendo nitrógeno molecular. En Colombia, demostramos la presencia de estas bacterias mediante el

  17. Enrichment and Characterization of an Autotrophic Ammonia-Oxidizing Archaeon of Mesophilic Crenarchaeal Group I.1a from an Agricultural Soil

    NARCIS (Netherlands)

    Jung, M.Y.; Park, S.J.; Min, D.; Kim, J.S.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Kim, G.J.; Madsen, E.L.; Rhee, S.K.

    2011-01-01

    Soil nitrification is an important process for agricultural productivity and environmental pollution. Though one cultivated representative of ammonia-oxidizing Archaea from soil has been described, additional representatives warrant characterization. We describe an ammonia-oxidizing archaeon (strain

  18. Dissimilatory Fe(III) reduction by the marine microorganism Desulfuromonas acetoxidans

    Science.gov (United States)

    Roden, E.E.; Lovley, D.R.

    1993-01-01

    The ability of the marine microorganism Desulfuromonas acetoxidans to reduce Fe(III) was investigated because of its close phylogenetic relationship with the freshwater dissimilatory Fe(III) reducer Geobacter metallireducens. Washed cell suspensions of the type strain of D. acetoxidans reduced soluble Fe(III)-citrate and Fe(III) complexed with nitriloacetic acid. The c-type cytochrome(s) of D. acetoxidans was oxidized by Fe(III)- citrate and Mn(IV)-oxalate, as well as by two electron acceptors known to support growth, colloidal sulfur and malate. D. acetoxidans grew in defined anoxic, bicarbonate-buffered medium with acetate as the sole electron donor and poorly crystalline Fe(III) or Mn(IV) as the sole electron acceptor. Magnetite (Fe3O4) and siderite (FeCO3) were the major end products of Fe(III) reduction, whereas rhodochrosite (MnCO3) was the end product of Mn(IV) reduction. Ethanol, propanol, pyruvate, and butanol also served as electron donors for Fe(III) reduction. In contrast to D. acetoxidans, G. metallireducens could only grow in freshwater medium and it did not conserve energy to support growth from colloidal S0 reduction. D. acetoxidans is the first marine microorganism shown to conserve energy to support growth by coupling the complete oxidation of organic compounds to the reduction of Fe(III) or Mn(IV). Thus, D. acetoxidans provides a model enzymatic mechanism for Fe(III) or Mn(IV) oxidation of organic compounds in marine and estuarine sediments. These findings demonstrate that 16S rRNA phylogenetic analyses can suggest previously unrecognized metabolic capabilities of microorganisms.

  19. Dissimilatory Fe(III) Reduction by the Marine Microorganism Desulfuromonas acetoxidans

    OpenAIRE

    Roden, Eric E.; Lovley, Derek R.

    1993-01-01

    The ability of the marine microorganism Desulfuromonas acetoxidans to reduce Fe(III) was investigated because of its close phylogenetic relationship with the freshwater dissimilatory Fe(III) reducer Geobacter metallireducens. Washed cell suspensions of the type strain of D. acetoxidans reduced soluble Fe(III)-citrate and Fe(III) complexed with nitriloacetic acid. The c-type cytochrome(s) of D. acetoxidans was oxidized by Fe(III)-citrate and Mn(IV)-oxalate, as well as by two electron acceptors...

  20. Freshwater autotrophic picoplankton: a review

    Directory of Open Access Journals (Sweden)

    John G. STOCKNER

    2002-02-01

    Full Text Available Autotrophic picoplankton (APP are distributed worldwide and are ubiquitous in all types of lakes of varying trophic state. APP are major players in carbon production in all aquatic ecosystems, including extreme environments such as cold ice-covered and/or warm tropical lakes and thermal springs. They often form the base of complex microbial food webs, becoming prey for a multitude of protozoan and micro-invertebrate grazers, that effectively channel APP carbon to higher trophic levels including fish. In this review we examine the existing literature on freshwater autotrophic picoplankton, setting recent findings and current ecological issues within an historic framework, and include a description of the occurrence and distribution of both single-cell and colonial APP (picocyanobacteria in different types of lakes. In this review we place considerable emphasis on methodology and ecology, including sampling, counting, preservation, molecular techniques, measurement of photosynthesis, and include extensive comment on their important role in microbial food webs. The model outlined by Stockner of an increase of APP abundance and biomass and a decrease of its relative importance with the increase of phosphorus concentration in lakes has been widely accepted, and only recently confirmed in marine and freshwater ecosystems. Nevertheless the relationship which drives the APP presence and importance in lakes of differing trophic status appears with considerable variation so we must conclude that the success of APP in oligotrophic lakes worldwide is not a certainty but highly probable.

  1. Release of 226Ra from uranium mill tailings by microbial Fe(III) reduction

    Science.gov (United States)

    Landa, E.R.; Phillips, E.J.P.; Lovley, D.R.

    1991-01-01

    Uranium mill tailings were anaerobically incubated in the presence of H2 with Alteromonas putrefaciens, a bacterium known to couple the oxidation of H2 and organic compounds to the reduction of Fe(III) oxides. There was a direct correlation between the extent of Fe(III) reduction and the accumulation of dissolved 226Ra. In sterile tailings in which Fe(III) was not reduced, there was negligible leaching of 226Ra. The behavior of Ba was similar to that of Ra in inoculated and sterile systems. These results demonstrate that under anaerobic conditions, microbial reduction of Fe(III) may result in the release of dissolved 226Ra from uranium mill tailings. ?? 1991.

  2. Arsenic(V) Incorporation in Vivianite during Microbial Reduction of Arsenic(V)-Bearing Biogenic Fe(III) (Oxyhydr)oxides.

    Science.gov (United States)

    Muehe, E Marie; Morin, Guillaume; Scheer, Lukas; Pape, Pierre Le; Esteve, Imène; Daus, Birgit; Kappler, Andreas

    2016-03-01

    The dissolution of arsenic-bearing iron(III) (oxyhydr)oxides during combined microbial iron(III) and arsenate(V) reduction is thought to be the main mechanism responsible for arsenic mobilization in reducing environments. Besides its mobilization during bioreduction, arsenic is often resequestered by newly forming secondary iron(II)-bearing mineral phases. In phosphate-bearing environments, iron(II) inputs generally lead to vivianite precipitation. In fact, in a previous study we observed that during bioreduction of arsenate(V)-bearing biogenic iron(III) (oxyhydr)oxides in phosphate-containing growth media, arsenate(V) was immobilized by the newly forming secondary iron(II) and iron(II)/iron(III)mineral phases, including vivianite. In the present study, changes in arsenic redox state and binding environment in these experiments were analyzed. We found that arsenate(V) partly replaced phosphate in vivianite, thus forming a vivianite-symplesite solid solution identified as Fe3(PO4)1.7(AsO4)0.3·8H2O. Our data suggests that in order to predict the fate of arsenic during the bioreduction of abiogenic and biogenic iron(III) (oxyhydr)oxides in arsenic-contaminated environments, the formation of symplesite-vivianite minerals needs to be considered. Indeed, such mineral phases could contribute to a delayed and slow release of arsenic in phosphate-bearing surface and groundwater environments.

  3. Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.

    Science.gov (United States)

    Andres, Jérémy; Arsène-Ploetze, Florence; Barbe, Valérie; Brochier-Armanet, Céline; Cleiss-Arnold, Jessica; Coppée, Jean-Yves; Dillies, Marie-Agnès; Geist, Lucie; Joublin, Aurélie; Koechler, Sandrine; Lassalle, Florent; Marchal, Marie; Médigue, Claudine; Muller, Daniel; Nesme, Xavier; Plewniak, Frédéric; Proux, Caroline; Ramírez-Bahena, Martha Helena; Schenowitz, Chantal; Sismeiro, Odile; Vallenet, David; Santini, Joanne M; Bertin, Philippe N

    2013-01-01

    Arsenic is widespread in the environment and its presence is a result of natural or anthropogenic activities. Microbes have developed different mechanisms to deal with toxic compounds such as arsenic and this is to resist or metabolize the compound. Here, we present the first reference set of genomic, transcriptomic and proteomic data of an Alphaproteobacterium isolated from an arsenic-containing goldmine: Rhizobium sp. NT-26. Although phylogenetically related to the plant-associated bacteria, this organism has lost the major colonizing capabilities needed for symbiosis with legumes. In contrast, the genome of Rhizobium sp. NT-26 comprises a megaplasmid containing the various genes, which enable it to metabolize arsenite. Remarkably, although the genes required for arsenite oxidation and flagellar motility/biofilm formation are carried by the megaplasmid and the chromosome, respectively, a coordinate regulation of these two mechanisms was observed. Taken together, these processes illustrate the impact environmental pressure can have on the evolution of bacterial genomes, improving the fitness of bacterial strains by the acquisition of novel functions.

  4. THE CALVIN CYCLE ENZYME PHOSPHOGLYCERATE KINASE OF XANTHOBACTER-FLAVUS REQUIRED FOR AUTOTROPHIC CO2 FIXATION IS NOT ENCODED BY THE CBB OPERON

    NARCIS (Netherlands)

    MEIJER, WG

    1994-01-01

    During autotrophic growth of Xanthobacter flavus, energy derived from the oxidation of hydrogen methanol or formate is used to drive the assimilation of CO2 via the Calvin cycle. The genes encoding the Calvin cycle enzymes are organized in the cbb operon, which is expressed only during autotrophic g

  5. Stimulated anoxic biodegradation of aromatic hydrocarbons using Fe(III) ligands

    Science.gov (United States)

    Lovley, D.R.; Woodward, J.C.; Chapelle, F.H.

    1994-01-01

    Contamination of ground waters with water-soluble aromatic hydrocarbons, common components of petroleum pollution, often produces anoxic conditions under which microbial degradation of the aromatics is slow. Oxygen is often added to contaminated ground water to stimulate biodegradation, but this can be technically difficult and expensive. Insoluble Fe(III) oxides, which are generally abundant in shallow aquifers, are alternative potential oxidants, but are difficult for microorganisms to access. Here we report that adding organic ligands that bind to Fe(III) dramatically increases its bioavailability, and that in the presence of these ligands, rates of degradation of aromatic hydrocarbons in anoxic aquifer sediments are comparable to those in oxic sediments. We find that even benzene, which is notoriously refractory in the absence of oxygen, can be rapidly degraded. Our results suggest that increasing the bioavailability of Fe(III) by adding suitable ligands provides a potential alternative to oxygen addition for the bioremediation of petroleum-contaminated aquifers.Contamination of ground waters with water-soluble aromatic hydrocarbons, common components of petroleum pollution, often produces anoxic conditions under which microbial degradation of the aromatics is slow. Oxygen is often added to contaminated ground water to stimulate biodegradation, but this can be technically difficult and expensive. Insoluble Fe(III) oxides, which are generally abundant in shallow aquifers, are alternative potential oxidants, but are difficult for microorganisms to access. Here we report that adding organic ligands that bind to Fe(III) dramatically increases its bioavailability, and that in the presence of these ligands, rates of degradation of aromatic hydrocarbons in anoxic aquifer sediments are comparable to those in oxic sediments. We find that even benzene, which is notoriously refractory in the absence of oxygen, can be rapidly degraded. Our results suggest that increasing

  6. Sequentially aerated membrane biofilm reactors for autotrophic nitrogen removal: microbial community composition and dynamics

    DEFF Research Database (Denmark)

    Pellicer i Nàcher, Carles; Franck, Stephanie; Gülay, Arda;

    2014-01-01

    Membrane-aerated biofilm reactors performing autotrophic nitrogen removal can be successfully applied to treat concentrated nitrogen streams. However, their process performance is seriously hampered by the growth of nitrite oxidizing bacteria (NOB). In this work we document how sequential aeration...

  7. Kinetics of microbial Fe(III) oxyhydroxidereduction: The role of mineral properties

    NARCIS (Netherlands)

    Bonneville, Steeve

    2005-01-01

    In many soils, sediments and groundwaters, ferric iron is a major potential electron acceptor for the oxidation of organic matter. In contrast to other terminal electron acceptors (e.g. nitrate or sulfate), the concentration of Fe3+(aq), is limited by the low solubility of Fe(III) oxyhydroxides un

  8. Kinetics of microbial Fe(III) oxyhydroxide reduction : The role of mineral properties

    NARCIS (Netherlands)

    Bonneville, S.C.

    2005-01-01

    In many soils, sediments and groundwaters, ferric iron is a major potential electron acceptor for the oxidation of organic matter. In contrast to other terminal electron acceptors (e.g. nitrate or sulfate), the concentration of Fe3+(aq), is limited by the low solubility of Fe(III) oxyhydroxides unde

  9. Microbial removal of Fe(III) impurities from clay using dissimilatory iron reducers.

    Science.gov (United States)

    Lee, E Y; Cho, K S; Ryu, H W; Chang, Y K

    1999-01-01

    Fe(III) impurities, which detract refractoriness and whiteness from porcelain and pottery, could be biologically removed from low-quality clay by indigenous dissimilatory Fe(III)-reducing microorganisms. Insoluble Fe(III) in clay particles was leached out as soluble Fe(II), and the Fe(III) reduction reaction was coupled to the oxidation of sugars such as glucose, maltose and sucrose. A maximum removal of 44-45% was obtained when the relative amount of sugar was 5% (w/w; sugar/clay). By the microbial treatment, the whiteness of the clay was increased from 63.20 to 79.64, whereas the redness was clearly decreased from 13.47 to 3.55.

  10. New method for the direct determination of dissolved Fe(III) concentration in acid mine waters

    Science.gov (United States)

    To, T.B.; Nordstrom, D.K.; Cunningham, K.M.; Ball, J.W.; McCleskey, R.B.

    1999-01-01

    A new method for direct determination of dissolved Fe(III) in acid mine water has been developed. In most present methods, Fe(III) is determined by computing the difference between total dissolved Fe and dissolved Fe(II). For acid mine waters, frequently Fe(II) >> Fe(III); thus, accuracy and precision are considerably improved by determining Fe(III) concentration directly. The new method utilizes two selective ligands to stabilize Fe(III) and Fe(II), thereby preventing changes in Fe reduction-oxidation distribution. Complexed Fe(II) is cleanly removed using a silica-based, reversed-phase adsorbent, yielding excellent isolation of the Fe(III) complex. Iron(III) concentration is measured colorimetrically or by graphite furnace atomic absorption spectrometry (GFAAS). The method requires inexpensive commercial reagents and simple procedures that can be used in the field. Calcium(II), Ni(II), Pb(II), AI(III), Zn(II), and Cd(II) cause insignificant colorimetric interferences for most acid mine waters. Waters containing >20 mg of Cu/L could cause a colorimetric interference and should be measured by GFAAS. Cobalt(II) and Cr(III) interfere if their molar ratios to Fe(III) exceed 24 and 5, respectively. Iron(II) interferes when its concentration exceeds the capacity of the complexing ligand (14 mg/L). Because of the GFAAS elemental specificity, only Fe(II) is a potential interferent in the GFAAS technique. The method detection limit is 2 ??g/L (40 nM) using GFAAS and 20 ??g/L (0.4 ??M) by colorimetry.A new method for direct determination of dissolved Fe(III) in acid mine water has been developed. In most present methods, Fe(III) is determined by computing the difference between total dissolved Fe and dissolved Fe(II). For acid mine waters, frequently Fe(II)???Fe(III); thus, accuracy and precision are considerably improved by determining Fe(III) concentration directly. The new method utilizes two selective ligands to stabilize Fe(III) and Fe(II), thereby preventing changes

  11. Citric acid cycle in the hyperthermophilic archaeon Pyrobaculum islandicum grown autotrophically, heterotrophically, and mixotrophically with acetate.

    Science.gov (United States)

    Hu, Yajing; Holden, James F

    2006-06-01

    The hyperthermophilic archaeon Pyrobaculum islandicum uses the citric acid cycle in the oxidative and reductive directions for heterotrophic and autotrophic growth, respectively, but the control of carbon flow is poorly understood. P. islandicum was grown at 95 degrees C autotrophically, heterotrophically, and mixotrophically with acetate, H2, and small amounts of yeast extract and with thiosulfate as the terminal electron acceptor. The autotrophic growth rates and maximum concentrations of cells were significantly lower than those in other media. The growth rates on H2 and 0.001% yeast extract with and without 0.05% acetate were the same, but the maximum concentration of cells was fourfold higher with acetate. There was no growth with acetate if 0.001% yeast extract was not present, and addition of H2 to acetate-containing medium greatly increased the growth rates and maximum concentrations of cells. P. islandicum cultures assimilated 14C-labeled acetate in the presence of H2 and yeast extract with an efficiency of 55%. The activities of 11 of 19 enzymes involved in the central metabolism of P. islandicum were regulated under the three different growth conditions. Pyruvate synthase and acetate:coenzyme A (CoA) ligase (ADP-forming) activities were detected only in heterotrophically grown cultures. Citrate synthase activity decreased in autotrophic and acetate-containing cultures compared to the activity in heterotrophic cultures. Acetylated citrate lyase, acetate:CoA ligase (AMP forming), and phosphoenolpyruvate carboxylase activities increased in autotrophic and acetate-containing cultures. Citrate lyase activity was higher than ATP citrate synthase activity in autotrophic cultures. These data suggest that citrate lyase and AMP-forming acetate:CoA ligase, but not ATP citrate synthase, work opposite citrate synthase to control the direction of carbon flow in the citric acid cycle.

  12. Dissimilatory Reduction of Fe(III) and Other Electron Acceptors by a Thermus Isolate

    Energy Technology Data Exchange (ETDEWEB)

    Kieft, T. L. [New Mexico Inst. of Mining and Technology, Socorro, NM (United States); Fredrickson, J. K. [Pacific Northwest National Lab., Richland, WA (United States); Onstott, T. C. [Princeton Univ., NJ (United States). Dept. of Geological and Geophysical Sciences; Gorby, Y. A. [Pacific Northwest National Lab., Richland, WA (United States); Kostandarithes, H. M. [Pacific Northwest National Lab., Richland, WA (United States); Bailey, T. J. [Pacific Northwest National Lab., Richland, WA (United States); Kennedy, D. W. [Pacific Northwest National Lab., Richland, WA (United States); Li, S. W. [Pacific Northwest National Lab., Richland, WA (United States); Plymale, A. E. [Pacific Northwest National Lab., Richland, WA (United States); Spadoni, C. M. [Pacific Northwest National Lab., Richland, WA (United States); Gray, M. S. [Pacific Northwest National Lab., Richland, WA (United States)

    1995-10-25

    A thermophilic bacterium that could use O{sub 2}, NO{sub 3}{sup -}, Fe(III), or S{sup o} as terminal electron acceptors for growth was isolated from groundwater sampled at 3.2 km depth in a South African gold mine. This organism, designated SA-01, clustered most closely with members of the genus Thermus, as determined by 16S rDNA gene sequence analysis. The 16S rDNA sequence of SA-01 was >98% similar to that of Thermus strain NMX2 A.1, which was previously isolated by other investigators from a thermal spring in New Mexico. Strain NMX2 A.1 was also able to reduce Fe(III) and other electron acceptors, whereas Thermus aquaticus (ATCC 25104) and Thermus filiformis (ATCC 43280) did not reduce NO{sub 3}{sup -} or Fe(III). Neither SA-01 nor NMX2 A.1 grew fermentatively, i.e., addition of an external electron acceptor was required for anaerobic growth. Thermus SA-01 reduced soluble Fe(III) complexed with citrate or nitrilotriacetic acid (NTA); however, it could only reduce relatively small quantities (0.5 mM) of hydrous ferric oxide (HFO) except when the humic acid analog 2,6-anthraquinone disulfonate (AQDS) was added as an electron shuttle, in which case 10 mM Fe(III) was reduced. Fe(III)-NTA was reduced quantitatively to Fe(II), was coupled to the oxidation of lactate, and could support growth through three consecutive transfers. Suspensions of Thermus SA-01 cells also reduced Mn(IV), Co(III)-EDTA, Cr(VI), and AQDS. Mn(IV)-oxide was reduced in the presence of either lactate or H{sub 2}. Both strains were also able to mineralize NTA to CO{sub 2} and to couple its oxidation to Fe(III) reduction and growth. The optimum temperature for growth and Fe(III) reduction by Thermus SA-01 and NMX2 A.1 is approximately 65 C; optimum pH is 6.5 to 7.0. This is the first report of a Thermus sp. being able to couple the oxidation of organic compounds to the reduction of Fe, Mn or S.

  13. Rapid photooxidation of Sb(III) in the presence of different Fe(III) species

    Science.gov (United States)

    Kong, Linghao; He, Mengchang; Hu, Xingyun

    2016-05-01

    The toxicity and mobility of antimony (Sb) are strongly influenced by the redox processes associated with Sb. Dissolved iron (Fe) is widely distributed in the environment as different species and plays a significant role in Sb speciation. However, the mechanisms of Sb(III) oxidation in the presence of Fe have remained unclear because of the complexity of Fe and Sb speciation. In this study, the mechanisms of Sb(III) photooxidation in the presence of different Fe species were investigated systematically. The photooxidation of Sb(III) occurred over a wide pH range, from 1 to 10. Oxygen was not a predominant or crucial factor in the Sb(III) oxidation process. The mechanism of Sb(III) photooxidation varied depending on the Fe(III) species. In acidic solution (pH 1-3), dichloro radicals (radCl2-) and hydroxyl radicals (radOH) generated by the photocatalysis of FeCl2+ and FeOH2+ were the main oxidants for Sb(III) oxidation. Fe(III) gradually transformed into the colloid ferric hydroxide (CFH) and ferrihydrite in circumneutral and alkaline solutions (pH 4-10). Photooxidation of Sb(III) occurred through electron transfer from Sb(III) to Fe(III) along with the reduction of Fe(III) to Fe(II) through a ligand-to-metal charge-transfer (LMCT) process. The photocatalysis of different Fe(III) species may play an important role in the geochemical cycle of Sb(III) in surface soil and aquatic environments.

  14. Impact of Aquifer Heterogeneities on Autotrophic Denitrification.

    Science.gov (United States)

    McCarthy, A.; Roques, C.; Selker, J. S.; Istok, J. D.; Pett-Ridge, J. C.

    2015-12-01

    Nitrate contamination in groundwater is a big challenge that will need to be addressed by hydrogeologists throughout the world. With a drinking water standard of 10mg/L of NO3-, innovative techniques will need to be pursued to ensure a decrease in drinking water nitrate concentration. At the pumping site scale, the influence and relationship between heterogeneous flow, mixing, and reactivity is not well understood. The purpose of this project is to incorporate both physical and chemical modeling techniques to better understand the effect of aquifer heterogeneities on autotrophic denitrification. We will investigate the link between heterogeneous hydraulic properties, transport, and the rate of autotrophic denitrification. Data collected in previous studies in laboratory experiments and pumping site scale experiments will be used to validate the models. The ultimate objective of this project is to develop a model in which such coupled processes are better understood resulting in best management practices of groundwater.

  15. Fate of Cd during microbial Fe(III) mineral reduction by a novel and Cd-tolerant Geobacter species.

    Science.gov (United States)

    Muehe, E Marie; Obst, Martin; Hitchcock, Adam; Tyliszczak, Tolek; Behrens, Sebastian; Schröder, Christian; Byrne, James M; Michel, F Marc; Krämer, Ute; Kappler, Andreas

    2013-12-17

    Fe(III) (oxyhydr)oxides affect the mobility of contaminants in the environment by providing reactive surfaces for sorption. This includes the toxic metal cadmium (Cd), which prevails in agricultural soils and is taken up by crops. Fe(III)-reducing bacteria can mobilize such contaminants by Fe(III) mineral dissolution or immobilize them by sorption to or coprecipitation with secondary Fe minerals. To date, not much is known about the fate of Fe(III) mineral-associated Cd during microbial Fe(III) reduction. Here, we describe the isolation of a new Geobacter sp. strain Cd1 from a Cd-contaminated field site, where the strain accounts for 10(4) cells g(-1) dry soil. Strain Cd1 reduces the poorly crystalline Fe(III) oxyhydroxide ferrihydrite in the presence of at least up to 112 mg Cd L(-1). During initial microbial reduction of Cd-loaded ferrihydrite, sorbed Cd was mobilized. However, during continuous microbial Fe(III) reduction, Cd was immobilized by sorption to and/or coprecipitation within newly formed secondary minerals that contained Ca, Fe, and carbonate, implying the formation of an otavite-siderite-calcite (CdCO3-FeCO3-CaCO3) mixed mineral phase. Our data shows that microbially mediated turnover of Fe minerals affects the mobility of Cd in soils, potentially altering the dynamics of Cd uptake into food or phyto-remediating plants.

  16. Stimulation of autotrophic denitrification by intrusions of the Bosporus Plume into the anoxic Black Sea

    Directory of Open Access Journals (Sweden)

    Clara A. Fuchsman

    2012-07-01

    Full Text Available Autotrophic denitrification was measured in the southwestern coastal Black Sea, where the Bosporus Plume injects oxidized chemical species (especially O2 and NO3- into the oxic, suboxic and anoxic layers. Prominent oxygen intrusions caused an overlap of NOx- and sulfide at the same station where autotrophic denitrification activity was detected with incubation experiments. Several bacteria that have been proposed to oxidize sulfide in other low oxygen environments were found in the Black Sea including SUP05, Sulfurimonas, Arcobacter, and BS-GSO2. Comparison of TRFLP profiles from this mixing zone station and the Western Gyre (a station not affected by the Bosporus Plume indicate the greatest relative abundance of Sulfurimonas and Arcobacter at the appropriate depths at the mixing zone station. The autotrophic gammaproteobacterium BS-GSO2 correlated with ammonium fluxes rather than with sulfide fluxes and the maximum in SUP05 peak height was shallower than the depths where autotrophic denitrification was detected. Notably, anammox activity was not detected at the mixing zone station, though low levels of DNA from the anammox bacteria Candidatus Scalindua were present. These results provide evidence for a modified ecosystem with different N2 production pathways in the southwest coastal region compared to that found in the rest of the Black Sea. Moreover, the same Sulfurimonas phylotype (BS139 was previously detected on >30 μm particles in the suboxic zone of the Western Gyre along with DNA of potential sulfate reducers, so it is possible that particle-attached autotrophic denitrification may be an overlooked N2 production pathway in the central Black Sea as well.

  17. Clostridium difficile is an autotrophic bacterial pathogen.

    Directory of Open Access Journals (Sweden)

    Michael Köpke

    Full Text Available During the last decade, Clostridium difficile infection showed a dramatic increase in incidence and virulence in the Northern hemisphere. This incessantly challenging disease is the leading cause of antibiotic-associated and nosocomial infectious diarrhea and became life-threatening especially among elderly people. It is generally assumed that all human bacterial pathogens are heterotrophic organisms, being either saccharolytic or proteolytic. So far, this has not been questioned as colonization of the human gut gives access to an environment, rich in organic nutrients. Here, we present data that C. difficile (both clinical and rumen isolates is also able to grow on CO2+H2 as sole carbon and energy source, thus representing the first identified autotrophic bacterial pathogen. Comparison of several different strains revealed high conservation of genes for autotrophic growth and showed that the ability to use gas mixtures for growth decreases or is lost upon prolonged culturing under heterotrophic conditions. The metabolic flexibility of C. difficile (heterotrophic growth on various substrates as well as autotrophy could allow the organism in the gut to avoid competition by niche differentiation and contribute to its survival when stressed or in unfavorable conditions that cause death to other bacteria. This may be an important trait for the pathogenicity of C. difficile.

  18. Sequential Aeration of Membrane-Aerated Biofilm Reactors for High-Rate Autotrophic Nitrogen Removal: Experimental Demonstration

    DEFF Research Database (Denmark)

    Pellicer i Nàcher, Carles; Sun, Sheng-Peng; Lackner, Susanne;

    2010-01-01

    One-stage autotrophic nitrogen (N) removal, requiring the simultaneous activity of aerobic and anaerobic ammonium oxidizing bacteria (AOB and AnAOB), can be obtained in spatially redox-stratified biofilms. However, previous experience with Membrane-Aerated Biofilm Reactors (MABRs) has revealed...

  19. Evaluation of siderite and magnetite formation in BIFs by pressure-temperature experiments of Fe(III) minerals and microbial biomass

    Science.gov (United States)

    Halama, Maximilian; Swanner, Elizabeth D.; Konhauser, Kurt O.; Kappler, Andreas

    2016-09-01

    Anoxygenic phototrophic Fe(II)-oxidizing bacteria potentially contributed to the deposition of Archean banded iron formations (BIFs), before the evolution of cyanobacterially-generated molecular oxygen (O2), by using sunlight to oxidize aqueous Fe(II) and precipitate Fe(III) (oxyhydr)oxides. Once deposited at the seafloor, diagenetic reduction of the Fe(III) (oxyhydr)oxides by heterotrophic bacteria produced secondary Fe(II)-bearing minerals, such as siderite (FeCO3) and magnetite (Fe3O4), via the oxidation of microbial organic carbon (i.e., cellular biomass). During deeper burial at temperatures above the threshold for life, thermochemical Fe(III) reduction has the potential to form BIF-like minerals. However, the role of thermochemical Fe(III) reduction of primary BIF minerals during metamorphism, and its impact on mineralogy and geochemical signatures in BIFs, is poorly understood. Consequently, we simulated the metamorphism of the precursor and diagenetic iron-rich minerals (ferrihydrite, goethite, hematite) at low-grade metamorphic conditions (170 °C, 1.2 kbar) for 14 days by using (1) mixtures of abiotically synthesized Fe(III) minerals and either microbial biomass or glucose as a proxy for biomass, and (2) using biogenic minerals formed by phototrophic Fe(II)-oxidizing bacteria. Mössbauer spectroscopy and μXRD showed that thermochemical magnetite formation was limited to samples containing ferrihydrite and glucose, or goethite and glucose. No magnetite was formed from Fe(III) minerals when microbial biomass was present as the carbon and electron sources for thermochemical Fe(III) reduction. This could be due to biomass-derived organic molecules binding to the mineral surfaces and preventing solid-state conversion to magnetite. Mössbauer spectroscopy revealed siderite contents of up to 17% after only 14 days of incubation at elevated temperature and pressure for all samples with synthetic Fe(III) minerals and biomass, whereas 6% of the initial Fe(III) was

  20. Biogenic Fe(III) minerals lower the efficiency of iron-mineral-based commercial filter systems for arsenic removal.

    Science.gov (United States)

    Kleinert, Susanne; Muehe, Eva M; Posth, Nicole R; Dippon, Urs; Daus, Birgit; Kappler, Andreas

    2011-09-01

    Millions of people worldwide are affected by As (arsenic) contaminated groundwater. Fe(III) (oxy)hydroxides sorb As efficiently and are therefore used in water purification filters. Commercial filters containing abiogenic Fe(III) (oxy)hydroxides (GEH) showed varying As removal, and it was unclear whether Fe(II)-oxidizing bacteria influenced filter efficiency. We found up to 10(7) Fe(II)-oxidizing bacteria/g dry-weight in GEH-filters and determined the performance of filter material in the presence and absence of Fe(II)-oxidizing bacteria. GEH-material sorbed 1.7 mmol As(V)/g Fe and was ~8 times more efficient than biogenic Fe(III) minerals that sorbed only 208.3 μmol As(V)/g Fe. This was also ~5 times more efficient than a 10:1-mixture of GEH-material and biogenic Fe(III) minerals that bound 322.6 μmol As(V)/g Fe. Coprecipitation of As(V) with biogenic Fe(III) minerals removed 343.0 μmol As(V)/g Fe, while As removal by coprecipitation with biogenic minerals in the presence of GEH-material was slightly less efficient as GEH-material only and yielded 1.5 mmol As(V)/g Fe. The present study thus suggests that the formation of biogenic Fe(III) minerals lowers rather than increases As removal efficiency of the filters probably due to the repulsion of the negatively charged arsenate by the negatively charged biogenic minerals. For this reason we recommend excluding microorganisms from filters (e.g., by activated carbon filters) to maintain their high As removal capacity.

  1. Bacteria attenuation by iron electrocoagulation governed by interactions between bacterial phosphate groups and Fe(III) precipitates

    NARCIS (Netherlands)

    Delaire, Caroline; van Genuchten, Case M.; Amrose, Susan E.; Gadgil, Ashok J.

    2016-01-01

    Iron electrocoagulation (Fe-EC) is a low-cost process in which Fe(II) generated from an Fe(0) anode reacts with dissolved O2 to form (1) Fe(III) precipitates with an affinity for bacterial cell walls and (2) bactericidal reactive oxidants. Previous work suggests that Fe-EC is a promising treatment o

  2. Autotrophic microbe metagenomes and metabolic pathways differentiate adjacent red sea brine pools

    KAUST Repository

    Wang, Yong

    2013-04-29

    In the Red Sea, two neighboring deep-sea brine pools, Atlantis II and Discovery, have been studied extensively, and the results have shown that the temperature and concentrations of metal and methane in Atlantis II have increased over the past decades. Therefore, we investigated changes in the microbial community and metabolic pathways. Here, we compared the metagenomes of the two pools to each other and to those of deep-sea water samples. Archaea were generally absent in the Atlantis II metagenome; Bacteria in the metagenome were typically heterotrophic and depended on aromatic compounds and other extracellular organic carbon compounds as indicated by enrichment of the related metabolic pathways. In contrast, autotrophic Archaea capable of CO2 fixation and methane oxidation were identified in Discovery but not in Atlantis II. Our results suggest that hydrothermal conditions and metal precipitation in the Atlantis II pool have resulted in elimination of the autotrophic community and methanogens.

  3. Microbial community stratification in Membrane-Aerated Biofilm Reactors for Completely Autotrophic Nitrogen Removal

    DEFF Research Database (Denmark)

    Pellicer i Nàcher, Carles; Ruscalleda, Maël; Terada, Akihiko;

    of bacterial granules or biofilms. In this sense, completely autotrophic nitrogen removal from high ammonium strength wastewater was achieved in a Membrane-Aereated Biofilm Reactor (MABR) in a single step. Here, a biofilm containing nitrifiers (Aerobic Ammonium and Nitrite Oxidizing Bacteria, AOB and NOB...... to the membrane, while AnAOB were localized next to them in areas where no oxygen was available. NOB were detected in very low amounts. Results proved the feasibility of developing biofilm structures for high-rate completely autotrophic nitrogen removal....... the biofilm, allowing nitrogen removal in a single reactor by simultaneous activity of the mentioned biocatalysts. This work consists on the analysis of the microbial community existing in two laboratory-scale reactors operated for more than 300 days, which removed up to 5.5 g-N/m2/day. The system contained...

  4. Nontronite (NAu-1) Structure Associated with Microbial Fe(III) Reduction in Various Redox Conditions

    Science.gov (United States)

    Koo, T.; Kim, S.; Kim, J.

    2011-12-01

    Shewanella oneidensis MR-1 respires the structural Fe(III) of smectite and promotes illite formation in O2-free environment (Kostka et al., 1996, Kim et al., 2004). Since S. oneidensis is a facultative iron reducing bacterium, it is crucial to understand the structural changes induced by bio-reduction of structural Fe(III) in various redox conditions. Furthermore, the changes in cation exchange capacity (CEC) of bio-reduced nontronite upon the modification of mineral structure has not been extensively studied in terms of Fe-cycling. In this present study, we reported the evolution of nontronite structure at various time points in various redox conditions and corresponding CEC upon reduction and re-oxidation. S. oneidensis MR-1 was incubated in M1 medium with Na-lactate as the electron donor and Fe in nontronite (NAu-1) as the sole electron acceptor at pH 7 in anaerobic chamber for 3 hrs, 12 hrs, 1 day, 2 days, 4 days, 7 days, 14 days, and 21 days. O2 gas bubbling was then applied to the sample at each time point for 24 hours for re-oxidation. The triplet samples at each time point for both reduction and re-oxidation experiments were prepared. The extent of Fe(III) reduction measured by 1,10-phenanthroline method (Stucki and Anderson, 1981) indicated that the structural Fe(III) was reduced up to 8.8% of total Fe(III) within 21 days. XRD data with various treatments such as air dried, glycolated and lithium-saturated showed that K-nontronite may be formed because no discrete 10-Å illite peak was observed in Li-saturated sample upon glycolation. The CEC increased from 747 meg/kg to 1145 meg/kg during Fe(III) reduction and decreased to 954 meg/kg upon re-oxidation, supporting the possible formation of K-nontronite. The direct observation by electron microscopy verified the structural changes in nontonite in various redox conditions. The long-term experiment for 6 months, is in progress in anaerobic chamber, and results will be discussed. Kim, J. W., Dong, H., Seabaugh

  5. Carbon dots preparation as a fluorescent sensing platform for highly efficient detection of Fe(III) ions in biological systems.

    Science.gov (United States)

    Hamishehkar, Hamed; Ghasemzadeh, Bahar; Naseri, Abdolhossein; Salehi, Roya; Rasoulzadeh, Farzaneh

    2015-01-01

    Water-soluble carbon dots (CDs) were prepared, using a facile hydrothermal oxidation route of cyclic oligosaccharide α-CD, as carbon sources, and alkali as additives. The successful synthesis of CDs was confirmed by scanning electron microscopy (SEM), dynamic light scattering (DLS), FTIR, UV-visible absorption, and emission fluorescence. The characterizations showed that the prepared CDs are spherical and well-dispersed in water with average diameters of approximately 2 nm. These water-soluble CDs have excellent photo stability towards photo bleaching during 30 days. The obtained CDs showed a strong emission at the wavelength of 450 nm, with an optimum excitation of 360 nm. The fluorescence quenching of CDs in the presence of Fe(III) ions was used as fluorescent probes for quantifying Fe(III) ions in aqueous solution. Under optimum condition, the fluorescence intensity versus Fe(III) concentration gave a linear response, according to Stern-Volmer equation. The linearity range of the calibration curve and the limit of detection were 1.60×10(-5) to 16.6×10(-5) mol L(-1), and 6.05×10(-6) mol L(-1), respectively, which was in the range for serum analysis of Fe(III). It was concluded that the prepared CDs had a great potential as fluorescent probes for applications in analysis of Fe(III) ions in the blood serum samples, which is hardly interfered by other ions.

  6. Start-up strategies of membrane-aerated biofilm reactor (MABR) for completely autotrophic nitrogen removal

    DEFF Research Database (Denmark)

    Sun, Sheng-Peng; Pellicer i Nàcher, Carles; Terada, Akihiko;

    2009-01-01

    Completely autotrophic nitrogen removal, coupling aerobic and anaerobic ammonium oxidation, can be achieved via redox stratified biofilms growing on gas-permeable membranes. These sequential reactions are mediated by aerobic and anaerobic ammonium oxidizing bacteria (AOB and AnAOB). The major......). Results indicate that the continuous inoculation strategy was more rapid and effective to achieve nitrogen removal than the sequential inoculation approach. Nitrogen loss in the reactor continuously inoculated with AnAOB was observed after 120 day operation, with an average NH4+-N and TN removal rate of 3...

  7. Comparative lipid composition of heterotrophically and autotrophically grown Sulfolobus acidocaldarius.

    Science.gov (United States)

    Langworthy, T A

    1977-06-01

    Complex lipids from the thermoacidophilic facultative autotroph Sulfolobus acidocaldarius, as well as a strictly autotrophic isolate, were compared between cells grown on yeast extract and elemental sulfur. Lipids from both organisms grown autotrophically were nearly identical. Each contained about 15% neutral lipids, 35% glycolipids, and 50% acidic lipids. Glycolipids and acidic lipids contained C40H82-76-derived glycerol ether residues. Major glycolipids included the glycerol ether analogues of glucosyl galactosyl diglyceride (5%) and glucosyl polyol diglyceride (75%). Acidic lipids were comprised mainly of the glycerol ether analogues of phosphatidyl inositol (7%), inositolphosphoryl glucosyl polyol diglyceride (72%), and a partially characterized sulfate- and phosphate-containing derivative of glucosyl polyol diglyceride (13%). The lipids from cells grown heterotrophically were similar to those from autotrophically grown cells, except that the partially characterized acidic lipid was absent. In addition, the two glycolipids as well as the respective inositolphosphoryl derivatives were each present in nearly equal proportions.

  8. Beyond the Calvin Cycle: Autotrophic Carbon Fixation in the Ocean

    Science.gov (United States)

    Hügler, Michael; Sievert, Stefan M.

    2011-01-01

    Organisms capable of autotrophic metabolism assimilate inorganic carbon into organic carbon. They form an integral part of ecosystems by making an otherwise unavailable form of carbon available to other organisms, a central component of the global carbon cycle. For many years, the doctrine prevailed that the Calvin-Benson-Bassham (CBB) cycle is the only biochemical autotrophic CO2 fixation pathway of significance in the ocean. However, ecological, biochemical, and genomic studies carried out over the last decade have not only elucidated new pathways but also shown that autotrophic carbon fixation via pathways other than the CBB cycle can be significant. This has ramifications for our understanding of the carbon cycle and energy flow in the ocean. Here, we review the recent discoveries in the field of autotrophic carbon fixation, including the biochemistry and evolution of the different pathways, as well as their ecological relevance in various oceanic ecosystems.

  9. Geochemical control of microbial Fe(III) reduction potential in wetlands: Comparison of the rhizosphere to non-rhizosphere soil

    Science.gov (United States)

    Weiss, J.V.; Emerson, D.; Megonigal, J.P.

    2004-01-01

    We compared the reactivity and microbial reduction potential of Fe(III) minerals in the rhizosphere and non-rhizosphere soil to test the hypothesis that rapid Fe(III) reduction rates in wetland soils are explained by rhizosphere processes. The rhizosphere was defined as the area immediately adjacent to a root encrusted with Fe(III)-oxides or Fe plaque, and non-rhizosphere soil was 0.5 cm from the root surface. The rhizosphere had a significantly higher percentage of poorly crystalline Fe (66??7%) than non-rhizosphere soil (23??7%); conversely, non-rhizosphere soil had a significantly higher proportion of crystalline Fe (50??7%) than the rhizosphere (18??7%, Psoil Fe(III)-oxide pool. Similarly, microbial reduction consumed 75-80% of the rhizosphere pool in 10 days compared to 30-40% of the non-rhizosphere soil pool. Differences between the two pools persisted when samples were amended with an electron-shuttling compound (AQDS), an Fe(III)-reducing bacterium (Geobacter metallireducens), and organic carbon. Thus, Fe(III)-oxide mineralogy contributed strongly to differences in the Fe(III) reduction potential of the two pools. Higher amounts of poorly crystalline Fe(III) and possibly humic substances, and a higher Fe(III) reduction potential in the rhizosphere compared to the non-rhizosphere soil, suggested the rhizosphere is a site of unusually active microbial Fe cycling. The results were consistent with previous speculation that rapid Fe cycling in wetlands is due to the activity of wetland plant roots. ?? 2004 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved.

  10. Heterotrophic and autotrophic microbial populations in cold perennial springs of the high arctic.

    Science.gov (United States)

    Perreault, Nancy N; Greer, Charles W; Andersen, Dale T; Tille, Stefanie; Lacrampe-Couloume, Georges; Lollar, Barbara Sherwood; Whyte, Lyle G

    2008-11-01

    The saline springs of Gypsum Hill in the Canadian high Arctic are a rare example of cold springs originating from deep groundwater and rising to the surface through thick permafrost. The heterotrophic bacteria and autotrophic sulfur-oxidizing bacteria (up to 40% of the total microbial community) isolated from the spring waters and sediments were classified into four phyla (Actinobacteria, Bacteroidetes, Firmicutes, and Proteobacteria) based on 16S rRNA gene analysis; heterotrophic isolates were primarily psychrotolerant, salt-tolerant, facultative anaerobes. Some of the isolates contained genes for thiosulfate oxidation (soxB) and anoxygenic photosynthesis (pufM), possibly enabling the strains to better compete in these sulfur-rich environments subject to long periods of illumination in the Arctic summer. Although leucine uptake by the spring water microbial community was low, CO(2) uptake was relatively high under dark incubation, reinforcing the idea that primary production by chemoautotrophs is an important process in the springs. The small amounts of hydrocarbons in gases exsolving from the springs (0.38 to 0.51% CH(4)) were compositionally and isotopically consistent with microbial methanogenesis and possible methanotrophy. Anaerobic heterotrophic sulfur oxidation and aerobic autotrophic sulfur oxidation activities were demonstrated in sediment slurries. Overall, our results describe an active microbial community capable of sustainability in an extreme environment that experiences prolonged periods of continuous light or darkness, low temperatures, and moderate salinity, where life seems to rely on chemolithoautotrophy.

  11. Formaldehyde as a carbon and electron shuttle between autotroph and heterotroph populations in acidic hydrothermal vents of Norris Geyser Basin, Yellowstone National Park.

    Science.gov (United States)

    Moran, James J; Whitmore, Laura M; Isern, Nancy G; Romine, Margaret F; Riha, Krystin M; Inskeep, William P; Kreuzer, Helen W

    2016-05-01

    The Norris Geyser Basin in Yellowstone National Park contains a large number of hydrothermal systems, which host microbial populations supported by primary productivity associated with a suite of chemolithotrophic metabolisms. We demonstrate that Metallosphaera yellowstonensis MK1, a facultative autotrophic archaeon isolated from a hyperthermal acidic hydrous ferric oxide (HFO) spring in Norris Geyser Basin, excretes formaldehyde during autotrophic growth. To determine the fate of formaldehyde in this low organic carbon environment, we incubated native microbial mat (containing M. yellowstonensis) from a HFO spring with (13)C-formaldehyde. Isotopic analysis of incubation-derived CO2 and biomass showed that formaldehyde was both oxidized and assimilated by members of the community. Autotrophy, formaldehyde oxidation, and formaldehyde assimilation displayed different sensitivities to chemical inhibitors, suggesting that distinct sub-populations in the mat selectively perform these functions. Our results demonstrate that electrons originally resulting from iron oxidation can energetically fuel autotrophic carbon fixation and associated formaldehyde excretion, and that formaldehyde is both oxidized and assimilated by different organisms within the native microbial community. Thus, formaldehyde can effectively act as a carbon and electron shuttle connecting the autotrophic, iron oxidizing members with associated heterotrophic members in the HFO community.

  12. Formaldehyde as a carbon and electron shuttle between autotroph and heterotroph populations in acidic hydrothermal vents of Norris Geyser Basin, Yellowstone National Park

    Energy Technology Data Exchange (ETDEWEB)

    Moran, James J.; Whitmore, Laura M.; Isern, Nancy G.; Romine, Margaret F.; Riha, Krystin M.; Inskeep, William P.; Kreuzer, Helen W.

    2016-03-19

    The Norris Geyser Basin in Yellowstone National Park contains a large number of hydrothermal systems, which host microbial populations supported by primary productivity associated with a suite of chemolithotrophic metabolisms. We demonstrate that Metallosphaera yellowstonesis MK1, a facultative autotrophic archaeon isolated from a hyperthermal acidic hydrous ferric oxide (HFO) spring in Norris Geyser Basin, excretes formaldehyde during autotrophic growth. To determine the fate of formaldehyde in this low organic carbon environment, we incubated native microbial mat (containing M. yellowstonensis) from a HFO spring with 13C-formaldehyde. Isotopic analysis of incubation-derived CO2 and biomass showed that formaldehyde was both oxidized and assimilated by members of the community. Autotrophy, formaldehyde oxidation, and formaldehyde assimilation displayed different sensitivities to chemical inhibitors, suggesting that distinct sub-populations in the mat selectively perform these functions. Our results demonstrate that electrons originally resulting from iron oxidation can energetically fuel autotrophic carbon fixation and associated formaldehyde excretion, and that formaldehyde is both oxidized and assimilated by different organisms within the native microbial community. Thus, formaldehyde can effectively act as a carbon and electron shuttle connecting the autotrophic, iron oxidizing members with associated heterotrophic members in the HFO community.

  13. Coupling autotrophic sulfide mineral weathering with dolomite dissolution in a subglacial ecosystem

    Science.gov (United States)

    Boyd, E. S.; Hamilton, T. L.; Havig, J. R.; Lange, R.; Murter, E.; Skidmore, M. L.; Peters, J.; Shock, E.

    2013-12-01

    Evidence in the rock record suggests that glaciers have been present and covered a significant portion of the Earth's surface since the putative Mozaan Glaciation (circa 2.9 Ga) and were demonstrated recently to host active microbial communities that impact local and global biogeochemical cycles. In the present study, we applied a microcosm-based radioisotopic biocarbonate tracer approach to quantify rates of inorganic carbon assimilation in sediments sampled from beneath Robertson Glacier (RG), Alberta, Canada at 4°C. Rates of inorganic carbon assimilation were stimulated by the addition of ammonium and phosphate, suggesting that these nutrients might be of limited supply in the subglacial environment or, in the case of ammonia, might be serving as a source of reductant fueling inorganic carbon fixation. Geochemical analyses were used to assess the potential redox couples that might be fueling autotrophic activity. The difference in the concentration of sulfate (2.4 mM) in unamended microcosm fluids when compared to fluids sampled from killed controls following 180 days incubation suggests that inorganic carbon assimilation in microcosms is driven by microbial populations involved in the oxidation of mineral sulfides, most likely pyrite. Amendment of microcosms with 1 mM ammonia led to near stoichiometric production of nitrate (~890 μM) and lower production of sulfate (~1.5 mM), indicating that the enhanced activity observed in ammonia treated microcosms is likely due to the stimulation of autotrophic ammonia oxidizing populations. The isotopic composition of dissolved organic carbon in subglacial meltwaters ranged was -24.40 ‰ versus VPDB, which is consistent with a source for this organic carbon via the activity of autotrophs that use the Calvin cycle of inorganic carbon fixation. Quantification and sequencing of transcripts of Calvin cycle biomarker genes (ribulose-1,5 bisphosphate carboxylase/oxygenase, encoded by cbbL) suggest the presence of a ubiquitous

  14. Heterogeneous reduction of PuO₂ with Fe(II): importance of the Fe(III) reaction product.

    Science.gov (United States)

    Felmy, Andrew R; Moore, Dean A; Rosso, Kevin M; Qafoku, Odeta; Rai, Dhanpat; Buck, Edgar C; Ilton, Eugene S

    2011-05-01

    Heterogeneous reduction of actinides in higher, more soluble oxidation states to lower, more insoluble oxidation states by reductants such as Fe(II) has been the subject of intensive study for more than two decades. However, Fe(II)-induced reduction of sparingly soluble Pu(IV) to the more soluble lower oxidation state Pu(III) has been much less studied, even though such reactions can potentially increase the mobility of Pu in the subsurface. Thermodynamic calculations are presented that show how differences in the free energy of various possible solid-phase Fe(III) reaction products can greatly influence aqueous Pu(III) concentrations resulting from reduction of PuO₂(am) by Fe(II). We present the first experimental evidence that reduction of PuO₂(am) to Pu(III) by Fe(II) was enhanced when the Fe(III) mineral goethite was spiked into the reaction. The effect of goethite on reduction of Pu(IV) was demonstrated by measuring the time dependence of total aqueous Pu concentration, its oxidation state, and system pe/pH. We also re-evaluated established protocols for determining Pu(III) {[Pu(III) + Pu(IV)] - Pu(IV)} by using thenoyltrifluoroacetone (TTA) in toluene extractions; the study showed that it is important to eliminate dissolved oxygen from the TTA solutions for accurate determinations. More broadly, this study highlights the importance of the Fe(III) reaction product in actinide reduction rate and extent by Fe(II).

  15. Extracellular Electron Uptake: Among Autotrophs and Mediated by Surfaces

    DEFF Research Database (Denmark)

    Tremblay, Pier-Luc; Angenent, Largus T.; Zhang, Tian

    2017-01-01

    Autotrophic microbes can acquire electrons from solid donors such as steel, other microbial cells, or electrodes. Based on this feature, bioprocesses are being developed for the microbial electrosynthesis (MES) of useful products from the greenhouse gas CO2. Extracellular electron-transfer mechan......Autotrophic microbes can acquire electrons from solid donors such as steel, other microbial cells, or electrodes. Based on this feature, bioprocesses are being developed for the microbial electrosynthesis (MES) of useful products from the greenhouse gas CO2. Extracellular electron...

  16. Evaluation on factors influencing the heterotrophic growth on the soluble microbial products of autotrophs.

    Science.gov (United States)

    Ni, Bing-Jie; Zeng, Raymond J; Fang, Fang; Xie, Wen-Ming; Xu, Juan; Sheng, Guo-Ping; Sun, Yu-Jiao; Yu, Han-Qing

    2011-04-01

    In this work, the heterotrophic growth on the microbial products of autotrophs and the effecting factors were evaluated with both experimental and modeling approaches. Fluorescence in situ hybridization (FISH) analysis illustrated that ammonia oxidizers (AOB), nitrite oxidizers (NOB), and heterotrophs accounted for about 65%, 20%, and 15% of the total bacteria, respectively. The mathematical evaluation of experimental data reported in literature indicated that heterotrophic growth in nitrifying biofilm (30-50%) and granules (30%) was significantly higher than that of nitrifying sludge (15%). It was found that low influent ammonium resulted in a lower availability of soluble microbial products (SMP) and a slower heterotrophic growth, but high ammonium (>150 mg N L(-1)) feeding would lead to purely AOB dominated sludge with high biomass-associated products contained effluent, although the absolute heterotrophic growth increased. Meanwhile, the total active biomass concentration increased gradually with the increasing solids retention time, whereas the factions of active AOB, NOB, and heterotrophs varied a lot at different solids retention times. This work could be useful for better understanding of the autotrophic wastewater treatment systems.

  17. Effect of desferrioxamine B and Suwannee River fulvic acid on Fe(III) release and Cr(III) desorption from goethite

    Science.gov (United States)

    Stewart, Angela G.; Hudson-Edwards, Karen A.; Dubbin, William E.

    2016-04-01

    Siderophores are biogenic chelating ligands that facilitate the solubilisation of Fe(III) and form stable complexes with a range of contaminant metals and therefore may significantly affect their biogeochemical cycling. Desferrioxamine B (DFOB) is a trihydroxamate siderophore that acts synergistically with fulvic acid and low molecular weight organic ligands to release Fe from Fe(III) oxides. We report the results of batch dissolution experiments in which we determine the rates of Cr(III) desorption and Fe(III) release from Cr(III)-treated synthetic goethite as influenced by DFOB, by fulvic acid, and by the two compounds in combination. We observed that adsorbed Cr(III) at 3% surface coverage significantly reduced Fe(III) release from goethite for all combinations of DFOB and fulvic acid. When DFOB (270 μM) was the only ligand present, dissolved Fe(III) and Cr(III) increased approximately 1000-fold and 16-fold, respectively, as compared to the ligand-free system, a difference we attribute to the slow rate of water exchange of Cr(III). Suwannee River fulvic acid (SRFA) acts synergistically with DFOB by (i) reducing the goethite surface charge leading to increased HDFOB+ surface excess and by (ii) forming aqueous Fe(III)-SRFA species whose Fe(III) is subsequently removed by DFOB to yield aqueous Fe(III)-DFOB complexes. These observations shed new light on the synergistic relationship between DFOB and fulvic acid and reveal the mechanisms of Fe(III) acquisition available to plants and micro-organisms in Cr(III) contaminated environments.

  18. Estimating autotrophic respiration in streams using daily metabolism data

    Science.gov (United States)

    Knowing the fraction of gross primary production (GPP) that is immediately respired by autotrophs and their closely associated heterotrophs (ARf) is necessary to understand the trophic base and carbon spiraling in streams. We show a means to estimate ARf from daily metabolism da...

  19. Fe(III) fertilization mitigating net global warming potential and greenhouse gas intensity in paddy rice-wheat rotation systems in China.

    Science.gov (United States)

    Liu, Shuwei; Zhang, Ling; Liu, Qiaohui; Zou, Jianwen

    2012-05-01

    A complete accounting of net greenhouse gas balance (NGHGB) and greenhouse gas intensity (GHGI) affected by Fe(III) fertilizer application was examined in typical annual paddy rice-winter wheat rotation cropping systems in southeast China. Annual fluxes of soil carbon dioxide (CO(2)), methane (CH(4)) and nitrous oxide (N(2)O) were measured using static chamber method, and the net ecosystem exchange of CO(2) (NEE) was determined by the difference between soil CO(2) emissions (R(H)) and net primary production (NPP). Fe(III) fertilizer application significantly decreased R(H) without adverse effects on NPP of rice and winter wheat. Fe(III) fertilizer application decreased seasonal CH(4) by 27-44%, but increased annual N(2)O by 65-100%. Overall, Fe(III) fertilizer application decreased the annual NGHGB and GHGI by 35-47% and 30-36%, respectively. High grain yield and low greenhouse gas intensity can be reconciled by Fe(III) fertilizer applied at the local recommendation rate in rice-based cropping systems.

  20. Systems and photosystems: cellular limits of autotrophic productivity in cyanobacteria.

    Science.gov (United States)

    Burnap, Robert L

    2015-01-01

    Recent advances in the modeling of microbial growth and metabolism have shown that growth rate critically depends upon the optimal allocation of finite proteomic resources among different cellular functions and that modeling growth rates becomes more realistic with the explicit accounting for the costs of macromolecular synthesis, most importantly, protein expression. The "proteomic constraint" is considered together with its application to understanding photosynthetic microbial growth. The central hypothesis is that physical limits of cellular space (and corresponding solvation capacity) in conjunction with cell surface-to-volume ratios represent the underlying constraints on the maximal rate of autotrophic microbial growth. The limitation of cellular space thus constrains the size the total complement of macromolecules, dissolved ions, and metabolites. To a first approximation, the upper limit in the cellular amount of the total proteome is bounded this space limit. This predicts that adaptation to osmotic stress will result in lower maximal growth rates due to decreased cellular concentrations of core metabolic proteins necessary for cell growth owing the accumulation of compatible osmolytes, as surmised previously. The finite capacity of membrane and cytoplasmic space also leads to the hypothesis that the species-specific differences in maximal growth rates likely reflect differences in the allocation of space to niche-specific proteins with the corresponding diminution of space devoted to other functions including proteins of core autotrophic metabolism, which drive cell reproduction. An optimization model for autotrophic microbial growth, the autotrophic replicator model, was developed based upon previous work investigating heterotrophic growth. The present model describes autotrophic growth in terms of the allocation protein resources among core functional groups including the photosynthetic electron transport chain, light-harvesting antennae, and the

  1. Systems and Photosystems: Cellular Limits of Autotrophic Productivity in Cyanobacteria

    Directory of Open Access Journals (Sweden)

    Robert L Burnap

    2015-01-01

    Full Text Available Recent advances in the modeling of microbial growth and metabolism have shown that growth rate critically depends upon the optimal allocation of finite proteomic resources among different cellular functions and that modeling growth rates becomes more realistic with the explicit accounting for the costs of macromolecular, most importantly, protein expression. The ‘proteomic constraint’ is considered together with its application to understanding photosynthetic microbial growth. The central hypothesis is that physical limits of cellular space (and corresponding solvation capacity and cell surface to volume ratios represent the underlying constraints on the maximal rate of autotrophic microbial growth. The limitation of cellular space thus constrains the size the total complement of macromolecules, dissolved ions, and metabolites. To a first approximation, the upper limit in the cellular amount of the total proteome is bounded the space limit. This predicts that adaptation to osmotic stress will result in lower maximal growth rates due to decreased cellular concentrations of core metabolic proteins necessary for cell growth owing the accumulation of compatible osmolytes, as surmised previously. The finite capacity of membrane and cytoplasmic space also leads to the hypothesis that the species-specific differences in maximal growth rates likely reflect differences in the allocation of space to niche-specific proteins with the corresponding diminution of space devoted to other functions including proteins of core autotrophic metabolism, which drive cell reproduction. An optimization model for autotrophic microbial growth, the autotrophic replicator model (ARM, was developed based upon previous work investigating heterotrophic growth. The present model describes autotrophic growth in terms of the allocation protein resources among core functional groups including the photosynthetic electron transport chain, light harvesting antennae, and the

  2. Mechanisms of Sb(III) Photooxidation by the Excitation of Organic Fe(III) Complexes.

    Science.gov (United States)

    Kong, Linghao; He, Mengchang

    2016-07-05

    Organic Fe(III) complexes are widely distributed in the aqueous environment, which can efficiently generate free radicals under light illumination, playing a significant role in heavy metal speciation. However, the potential importance of the photooxidation of Sb(III) by organic Fe(III) complexes remains unclear. Therefore, the photooxidation mechanisms of Sb(III) were comprehensively investigated in Fe(III)-oxalate, Fe(III)-citrate and Fe(III)-fulvic acid (FA) solutions by kinetic measurements and modeling. Rapid photooxidation of Sb(III) was observed in an Fe(III)-oxalate solution over the pH range of 3 to 7. The addition of tert-butyl alcohol (TBA) as an ·OH scavenger quenched the Sb(III) oxidation, suggesting that ·OH is an important oxidant for Sb(III). However, the incomplete quenching of Sb(III) oxidation indicated the existence of other oxidants, presumably an Fe(IV) species in irradiated Fe(III)-oxalate solution. In acidic solutions, ·OH may be formed by the reaction of Fe(II)(C2O4) with H2O2, but a hypothetical Fe(IV) species may be generated by the reaction of Fe(II)(C2O4)2(2-) with H2O2 at higher pH. Kinetic modeling provides a quantitative explanation of the results. Evidence for the existence of ·OH and hypothetical Fe(IV) was also observed in an irradiated Fe(III)-citrate and Fe(III)-FA system. This study demonstrated an important pathway of Sb(III) oxidation in surface waters.

  3. Concurrent nitrate and Fe(III) reduction during anaerobic biodegradation of phenols in a sandstone aquifer

    DEFF Research Database (Denmark)

    Broholm, Mette; Crouzet, C.; Arvin, Erik

    2000-01-01

    in the anaerobic microcosms were mixed nitrate and Fe(III) reducing. Nitrate and Fe(III) were apparently the dominant electron accepters at high and low nitrate concentrations, respectively. When biomass growth is taken into account, nitrate and Fe(III) reduction constituted sufficient electron acceptor capacity...

  4. Metal-Assisted Oxo Atom Addition to an Fe(III) Thiolate.

    Science.gov (United States)

    Villar-Acevedo, Gloria; Lugo-Mas, Priscilla; Blakely, Maike N; Rees, Julian A; Ganas, Abbie S; Hanada, Erin M; Kaminsky, Werner; Kovacs, Julie A

    2017-01-11

    Cysteinate oxygenation is intimately tied to the function of both cysteine dioxygenases (CDOs) and nitrile hydratases (NHases), and yet the mechanisms by which sulfurs are oxidized by these enzymes are unknown, in part because intermediates have yet to be observed. Herein, we report a five-coordinate bis-thiolate ligated Fe(III) complex, [Fe(III)(S2(Me2)N3(Pr,Pr))](+) (2), that reacts with oxo atom donors (PhIO, IBX-ester, and H2O2) to afford a rare example of a singly oxygenated sulfenate, [Fe(III)(η(2)-S(Me2)O)(S(Me2))N3(Pr,Pr)](+) (5), resembling both a proposed intermediate in the CDO catalytic cycle and the essential NHase Fe-S(O)(Cys114) proposed to be intimately involved in nitrile hydrolysis. Comparison of the reactivity of 2 with that of a more electron-rich, crystallographically characterized derivative, [Fe(III)S2(Me2)N(Me)N2(amide)(Pr,Pr)](-) (8), shows that oxo atom donor reactivity correlates with the metal ion's ability to bind exogenous ligands. Density functional theory calculations suggest that the mechanism of S-oxygenation does not proceed via direct attack at the thiolate sulfurs; the average spin-density on the thiolate sulfurs is approximately the same for 2 and 8, and Mulliken charges on the sulfurs of 8 are roughly twice those of 2, implying that 8 should be more susceptible to sulfur oxidation. Carboxamide-ligated 8 is shown to be unreactive towards oxo atom donors, in contrast to imine-ligated 2. Azide (N3(-)) is shown to inhibit sulfur oxidation with 2, and a green intermediate is observed, which then slowly converts to sulfenate-ligated 5. This suggests that the mechanism of sulfur oxidation involves initial coordination of the oxo atom donor to the metal ion. Whether the green intermediate is an oxo atom donor adduct, Fe-O═I-Ph, or an Fe(V)═O remains to be determined.

  5. Targeted Enhancement of H2 and CO2 Uptake for Autotrophic Production of Biodiesel in the Lithoautotrophic Bacterium Ralsonia Eutropha

    Energy Technology Data Exchange (ETDEWEB)

    Eckert, C. A.; Sullivan, R.; Johnson, C.; Yu, J.; Maness, P. C.

    2013-01-01

    CO2 and H2 are promising feedstocks for production of valuable biocompounds. Ralstonia eutropha utilizes these feedstocks to generate energy (ATP) and reductant (NAD(P)H) via oxidation of H2 by a membrane-bound (MBH) and a soluble hydrogenase (SH) for CO2 fixation by the Calvin-Benson-Bassham (CBB) cycle. Increased expression of the enzyme that fixes CO2 (RubisCO) resulted in 6-fold activity improvement in vitro, while increased expression of the MBH operon or the SH operon plus MBH operon maturation factors necessary for activity resulted in a 10-fold enhancement. Current research involves genetic manipulation of two endogenous cbb operons for increased expression, analysis of expression and activity of CBB/MBH/SH, cofactor ratios, and downstream products during autotrophic growth in control versus enhanced strains, and development of strategies for long-term, optimal overexpression. These studies will improve our understanding of autotrophic metabolism and provide a chassis strain for autotrophic production of biodiesel and other valuable carbon biocompounds.

  6. Isotopically nonstationary MFA (INST-MFA) of autotrophic metabolism.

    Science.gov (United States)

    Jazmin, Lara J; O'Grady, John P; Ma, Fangfang; Allen, Doug K; Morgan, John A; Young, Jamey D

    2014-01-01

    Metabolic flux analysis (MFA) is a powerful approach for quantifying plant central carbon metabolism based upon a combination of extracellular flux measurements and intracellular isotope labeling measurements. In this chapter, we present the method of isotopically nonstationary (13)C MFA (INST-MFA), which is applicable to autotrophic systems that are at metabolic steady state but are sampled during the transient period prior to achieving isotopic steady state following the introduction of (13)CO2. We describe protocols for performing the necessary isotope labeling experiments, sample collection and quenching, nonaqueous fractionation and extraction of intracellular metabolites, and mass spectrometry (MS) analysis of metabolite labeling. We also outline the steps required to perform computational flux estimation using INST-MFA. By combining several recently developed experimental and computational techniques, INST-MFA provides an important new platform for mapping carbon fluxes that is especially applicable to autotrophic organisms, which are not amenable to steady-state (13)C MFA experiments.

  7. Denitrification characteristics of a sulfur autotrophic denitrification reactor

    Directory of Open Access Journals (Sweden)

    Chenxiao ZHANG

    2016-02-01

    Full Text Available The denitrification characteristics of a sulfur autotrophic denitrification reactor are investigated. The results show that domestication of sulfur autotrophic bacteria is completed within 15 days after biofilm formation in the reactor, which is shorter than other similar researches. The nitrogen removal rate remains over than 90%, and the denitrification rate reaches 18.5 mg N/(L·h with influent NO-3-N of 70 mg/L , influent pH of 8 and HRT of 4.3 h . Thiobacillus denitrificans are observed in the whole reactor when domestication finishes, while it is more abundant in the middle and lower part. The optimal influent NO-3-N concentration for the reactor is 50 mg/L, the optimal temperature is 30~35 ℃, the optimal influent pH is 7~8, and the nitrogen removal rate is over than 90%.

  8. Autotrophic stoichiometry emerging from optimality and variable co-limitation

    Directory of Open Access Journals (Sweden)

    Kai W Wirtz

    2016-11-01

    Full Text Available Autotrophic organisms reveal an astounding flexibility in their elemental stoichiometry, with potentially major implications on biogeochemical cycles and ecological functioning. Notwithstanding, stoichiometric regulation and co-limitation by multiple resources in autotrophs revt were in the past often described by heuristic formulations.In this study, we present a mechanistic model of autotroph growth, which features two major improvements over the existing schemes. First, we introduce the concept of metabolic network independence that defines the degree of phase-locking between accessory machines. Network independence is in particular suggested to be proportional to protein synthesis capability as quantified by variable intracellular N:C. Consequently, the degree of co-limitation becomes variable, contrasting with the dichotomous debate on the use of Liebig's law or the product rule, standing for constantly low and high co-limitation, respectively. Second, we resolve dynamic protein partitioning to light harvesting, carboxylation processes, and to an arbitrary number of nutrient acquisition machineries, as well as instantaneous activity regulation of nutrient uptake. For all regulatory processes we assume growth rate optimality, here extended by an explicit consideration of indirect feed-back effects.The combination of network independence and optimal regulation displays unprecedented skill in reproducing rich stoichiometric patterns collected from a large number of published chemostat experiments. This high skill indicates (1 that the current paradigm of fixed co-limitation is a critical short-coming of conventional models, and (2 that stoichiometric flexibility in autotrophs possibly reflects an optimality strategy. Numerical experiments furthermore show that regulatory mechanisms homogenize the effect of multiple stressors. Extended optimality alleviates the effect of the most limiting resource(s while down-regulating machineries for the

  9. Nitrate removal with lateral flow sulphur autotrophic denitrification reactor.

    Science.gov (United States)

    Lv, Xiaomei; Shao, Mingfei; Li, Ji; Xie, Chuanbo

    2014-01-01

    An innovative lateral flow sulphur autotrophic denitrification (LFSAD) reactor was developed in this study; the treatment performance was evaluated and compared with traditional sulphur/limestone autotrophic denitrification (SLAD) reactor. Results showed that nitrite accumulation in the LFSAD reactor was less than 1.0 mg/L during the whole operation. Denitrification rate increased with the increased initial alkalinity and was approaching saturation when initial alkalinity exceeded 2.5 times the theoretical value. Higher influent nitrate concentration could facilitate nitrate removal capacity. In addition, denitrification efficiency could be promoted under an appropriate reflux ratio, and the highest nitrate removal percentage was achieved under reflux ratio of 200%, increased by 23.8% than that without reflux. Running resistance was only about 1/9 of that in SLAD reactor with equal amount of nitrate removed, which was the prominent excellence of the new reactor. In short, this study indicated that the developed reactor was feasible for nitrate removal from waters with lower concentrations, including contaminated surface water, groundwater or secondary effluent of municipal wastewater treatment with fairly low running resistance. The innovation in reactor design in this study may bring forth new ideas of reactor development of sulphur autotrophic denitrification for nitrate-contaminated water treatment.

  10. Fe(III) shifts the mitochondria permeability transition-eliciting capacity of mangiferin to protection of organelle.

    Science.gov (United States)

    Pardo-Andreu, Gilberto L; Cavalheiro, Renata A; Dorta, Daniel J; Naal, Zeki; Delgado, René; Vercesi, Aníbal E; Curti, Carlos

    2007-02-01

    Mangiferin acts as a strong antioxidant on mitochondria. However, when in the presence of Ca(2+), mangiferin elicits mitochondrial permeability transition (MPT), as evidenced by cyclosporin A-sensitive mitochondrial swelling. We now provide evidence, by means of electrochemical and UV-visible spectroscopical analysis, that Fe(III) coordinates with mangiferin. The resulting mangiferin-Fe(III) complex does not elicit MPT and prevents MPT by scavenging reactive oxygen species. Indeed, the complex protects mitochondrial membrane protein thiols and glutathione from oxidation. Fe(III) also significantly increases the ability of mangiferin to scavenge the 2,2-diphenyl-1-picrylhydrazyl radical, as well as to display antioxidant activity toward antimycin A-induced H(2)O(2) production and t-butyl hydroperoxide-promoted membrane lipid peroxidation in mitochondria. We postulate that coordination with Fe(III) constitutes a potential protective mechanism toward the prooxidant action of mangiferin and other catechol-containing antioxidants regarding MPT induction. Potential therapeutic relevance of this finding for conditions of pathological iron overload is discussed.

  11. Performance of a completely autotrophic nitrogen removal over nitrite process for treating wastewater with different substrates at ambient temperature

    Institute of Scientific and Technical Information of China (English)

    Xiaoyan Chang; Dong Li; Yuhai Liang; Zhuo Yang; Shaoming Cui; Tao Liu; Huiping Zeng

    2013-01-01

    The stability and parameters of a bio-ceramic filter for completely autotrophic nitrogen removal were investigated.The completely autotrophic nitrogen removal over nitrite (CANON) reactor was fed with different concentrations of ammonia (400,300,and 200 mg N/L) but constant influent ammonia load.The results showed that the CANON system can achieve good treatment performance at ambient temperature (15-23℃).The average removal rate and removal loading of NH4 +-N and TN was 83.90%,1.26 kg N/(m3.day),and 70.14%,1.09 kg N/(m3.day),respectively.Among the influencing factors like pH,dissolved oxygen and alkalinity,it was indicated that the pH was the key parameter of the performance of the CANON system.Observing the variation of pH would contribute to better control of the CANON system in an intuitive and fast way.Denaturing gradient gel electrophoresis analysis of microorganisms further revealed that there were some significant changes in the community structure of ammonium oxidizing bacteria,which had low diversity in different stages,while the species of anaerobic ammonium oxidizing (anammox) bacteria were fewer and the community composition was relatively stable.These observations showed that anaerobic ammonia oxidation was more stable than the aerobic ammonia oxidation,which could explain that why the CANON system maintained a good removal efficiency under the changing substrate conditions.

  12. Heterogeneous Reduction of PuO2 with Fe(II): Importance of the Fe(III) Reaction Product

    Energy Technology Data Exchange (ETDEWEB)

    Felmy, Andrew R.; Moore, Dean A.; Rosso, Kevin M.; Qafoku, Odeta; Rai, Dhanpat; Buck, Edgar C.; Ilton, Eugene S.

    2011-05-01

    Abstract Heterogeneous reduction of actinides in higher and more soluble oxidation states to lower more insoluble oxidation states by reductants such as Fe(II) has been the subject of intensive study for more than two decades. However, Fe(II)-induced reduction of sparingly soluble Pu(IV) to the more soluble lower oxidation state Pu(III) has been much less studied even though such reactions can potentially increase the mobility of Pu in the subsurface. Thermodynamic calculations are presented that show how differences in the free energy of various possible solid-phase Fe(III) reaction products can greatly influence aqueous Pu(III) concentrations resulting from reduction of PuO2(am) by Fe(II). We present the first experimental evidence that reduction of PuO2(am) to Pu(III) by Fe(II) was enhanced when the Fe(III) mineral goethite was spiked into the reaction. The effect of goethite on reduction of Pu(IV) was demonstrated by measuring the time-dependence of total aqueous Pu concentration, its oxidation state, and system pe/pH. We also re-evaluated established protocols for determining Pu(III) [(Pu(III) + Pu(IV)) - Pu(IV)] by using thenoyltrifluoroacetone (TTA) in toluene extractions; the study showed that it is important to eliminate dissolved oxygen from the TTA solutions for accurate determinations. More broadly, this study highlights the importance of the Fe(III) reaction product in actinide reduction rate and extent by Fe(II).

  13. Nitrification and growth of autotrophic nitrifying bacteria and Thaumarchaeota in the coastal North Sea

    OpenAIRE

    2013-01-01

    Nitrification and the associated growth of autotrophic nitrifiers, as well as the contributions of bacteria and Thaumarchaeota to total autotrophic C-fixation by nitrifiers were investigated in the Dutch coastal North Sea from October 2007 to March 2008. Rates of nitrification were determined by incubation of water samples with 15N-ammonium and growth of autotrophic nitrifiers was measured by incubation with 13C-DIC in the presence and absen...

  14. A dicarboxylate/4-hydroxybutyrate autotrophic carbon assimilation cycle in the hyperthermophilic Archaeum Ignicoccus hospitalis.

    Science.gov (United States)

    Huber, Harald; Gallenberger, Martin; Jahn, Ulrike; Eylert, Eva; Berg, Ivan A; Kockelkorn, Daniel; Eisenreich, Wolfgang; Fuchs, Georg

    2008-06-03

    Ignicoccus hospitalis is an anaerobic, autotrophic, hyperthermophilic Archaeum that serves as a host for the symbiotic/parasitic Archaeum Nanoarchaeum equitans. It uses a yet unsolved autotrophic CO(2) fixation pathway that starts from acetyl-CoA (CoA), which is reductively carboxylated to pyruvate. Pyruvate is converted to phosphoenol-pyruvate (PEP), from which glucogenesis as well as oxaloacetate formation branch off. Here, we present the complete metabolic cycle by which the primary CO(2) acceptor molecule acetyl-CoA is regenerated. Oxaloacetate is reduced to succinyl-CoA by an incomplete reductive citric acid cycle lacking 2-oxoglutarate dehydrogenase or synthase. Succinyl-CoA is reduced to 4-hydroxybutyrate, which is then activated to the CoA thioester. By using the radical enzyme 4-hydroxybutyryl-CoA dehydratase, 4-hydroxybutyryl-CoA is dehydrated to crotonyl-CoA. Finally, beta-oxidation of crotonyl-CoA leads to two molecules of acetyl-CoA. Thus, the cyclic pathway forms an extra molecule of acetyl-CoA, with pyruvate synthase and PEP carboxylase as the carboxylating enzymes. The proposal is based on in vitro transformation of 4-hydroxybutyrate, detection of all enzyme activities, and in vivo-labeling experiments using [1-(14)C]4-hydroxybutyrate, [1,4-(13)C(2)], [U-(13)C(4)]succinate, or [1-(13)C]pyruvate as tracers. The pathway is termed the dicarboxylate/4-hydroxybutyrate cycle. It combines anaerobic metabolic modules to a straightforward and efficient CO(2) fixation mechanism.

  15. [Study on hydrogen autotrophic denitrification of bio-ceramic reactor].

    Science.gov (United States)

    Chen, Dan; Wang, Hong-Yu; Song, Min; Yang, Kai; Liu, Chen

    2013-10-01

    Nitrate wastewater is processed in a bio-ceramic reactor based on hydrogen autotrophic denitrification. The implementation procedure of biological denitrification by hydrogen autotrophic denitrification was investigated. The effects of hydraulic retention time, influent nitrate load, influent pH, temperature and the amount of hydrogen were assessed throughout this trial. The results showed that the removal rate of NO-(3) -N was 94. 54% and 97. 47% when the hydraulic retention time was 24 h and 48 h, respectively. When the hydraulic retention time was in the range of 5-16 h, the removal rate gradually dropped with the shortening of the hydraulic retention time. When the influent NO-(3) -N concentration was low, with the increase in the influent NO-(3) -N concentration, the degradation rate also increased. The denitrification was inhibited when the NO-(3) -N concentration was higher than 110 mg.L-1. Neutral and alkaline environment was more suitable for the reactor. The reactor showed a wide range of temperature adaptation and the optimum temperature of the reactor was from 25 to 30 degrees C. When hydrogen was in short supply, the effect of denitrification was significantly reduced. These results indicated the specificity of hydrogen utilization by the denitrifying bacteria. The effluent nitrite nitrogen concentration was maintained at low levels during the operation.

  16. Identification of the autotrophic denitrifying community in nitrate removal reactors by DNA-stable isotope probing.

    Science.gov (United States)

    Xing, Wei; Li, Jinlong; Cong, Yuan; Gao, Wei; Jia, Zhongjun; Li, Desheng

    2017-04-01

    Autotrophic denitrification has attracted increasing attention for wastewater with insufficient organic carbon sources. Nevertheless, in situ identification of autotrophic denitrifying communities in reactors remains challenging. Here, a process combining micro-electrolysis and autotrophic denitrification with high nitrate removal efficiency was presented. Two batch reactors were fed organic-free nitrate influent, with H(13)CO3(-) and H(12)CO3(-) as inorganic carbon sources. DNA-based stable-isotope probing (DNA-SIP) was used to obtain molecular evidence for autotrophic denitrifying communities. The results showed that the nirS gene was strongly labeled by H(13)CO3(-), demonstrating that the inorganic carbon source was assimilated by autotrophic denitrifiers. High-throughput sequencing and clone library analysis identified Thiobacillus-like bacteria as the most dominant autotrophic denitrifiers. However, 88% of nirS genes cloned from the (13)C-labeled "heavy" DNA fraction showed low similarity with all culturable denitrifiers. These findings provided functional and taxonomical identification of autotrophic denitrifying communities, facilitating application of autotrophic denitrification process for wastewater treatment.

  17. Lipid-based liquid biofuels from autotrophic microalgae: energetic and environmental performance

    NARCIS (Netherlands)

    Reijnders, L.

    2013-01-01

    Commercial cultivation of autotrophic microalgae for food production dates back to the 1950s. Autotrophic microalgae have also been proposed as a source for lipid-based liquid biofuels. As yet, there is no commercial production of such biofuels and estimated near-term prices are far in excess of fos

  18. Autotrophic and heterotrophic activity in Arctic first-year sea ice

    DEFF Research Database (Denmark)

    Søgaard, Dorte Haubjerg; Kristensen, Morten; Rysgaard, Søren

    2010-01-01

    in plastic bags with subsequent melting and measurements of changes in total O2 concentrations. The standard incubations showed that the annual succession followed a distinctive pattern, with a low, almost balancing heterotrophic and autotrophic activity during February and March. This period was followed...... by an algal bloom in late March and April, leading to a net autotrophic community. During February and March, the oxygen level in the bag incubations remained constant, validating the low balanced heterotrophic and autotrophic activity. As the autotrophic activity exceeded the heterotrophic activity in late...... March and April, it resulted in a significant net oxygen accumulation in the bag incubations. Integrated over the entire season, the sea ice of Malene Bight was net autotrophic with an annual net carbon fixation of 220 mg C m– 2, reflecting the net result of a sea ice-related gross primary production...

  19. Redox cycling of Fe(II) and Fe(III) in magnetite by Fe-metabolizing bacteria

    Science.gov (United States)

    Byrne, James M.; Klueglein, Nicole; Pearce, Carolyn; Rosso, Kevin M.; Appel, Erwin; Kappler, Andreas

    2015-03-01

    Microorganisms are a primary control on the redox-induced cycling of iron in the environment. Despite the ability of bacteria to grow using both Fe(II) and Fe(III) bound in solid-phase iron minerals, it is currently unknown whether changing environmental conditions enable the sharing of electrons in mixed-valent iron oxides between bacteria with different metabolisms. We show through magnetic and spectroscopic measurements that the phototrophic Fe(II)-oxidizing bacterium Rhodopseudomonas palustris TIE-1 oxidizes magnetite (Fe3O4) nanoparticles using light energy. This process is reversible in co-cultures by the anaerobic Fe(III)-reducing bacterium Geobacter sulfurreducens. These results demonstrate that Fe ions bound in the highly crystalline mineral magnetite are bioavailable as electron sinks and electron sources under varying environmental conditions, effectively rendering magnetite a naturally occurring battery.

  20. Control of Fe(III) site occupancy on the rate and extent of microbial reduction of Fe(III) in nontronite

    Science.gov (United States)

    Jaisi, D.P.; Kukkadapu, R.K.; Eberl, D.D.; Dong, H.

    2005-01-01

    A quantitative study was performed to understand how Fe(III) site occupancy controls Fe(III) bioreduction in nontronite by Shewanella putrefaciens CN32. NAu-1 and NAu-2 were nontronites and contained Fe(III) in different structural sites with 16 and 23% total iron (w/w), respectively, with almost all iron as Fe(III). Mo??ssbauer spectroscopy showed that Fe(III) was present in the octahedral site in NAu-1 (with a small amount of goethite), but in both the tetrahedral and the octahedral sites in NAu-2. Mo??ssbauer data further showed that the octahedral Fe(III) in NAu-2 existed in at least two environments- trans (M1) and cis (M2) sites. The microbial Fe(III) reduction in NAu-1 and NAu-2 was studied in batch cultures at a nontronite concentration of 5 mg/mL in bicarbonate buffer with lactate as the electron donor. The unreduced and bioreduced nontronites were characterized by X-ray diffraction (XRD), Mo??ssbauer spectroscopy, and transmission electron microscopy (TEM). In the presence of an electron shuttle, anthraquinone-2,6-disulfonate (AQDS), the extent of bioreduction was 11%-16% for NAu-1 but 28%-32% for NAu-2. The extent of reduction in the absence of AQDS was only 5%-7% for NAu-1 but 14%-18% for NAu-2. The control experiments with heat killed cells and without cells did not show any appreciable reduction (crystal size distribution. The decrease in crystal size suggests reductive dissolution of nontronite NAu-2, which was supported by aqueous solution chemistry (i.e., aqueous Si). These data suggest that the more extensive Fe(III) bioreduction in NAu-2 was due to the presence of the tetrahedral and the trans-octahedral Fe(III), which was presumed to be more reducible. The biogenic Fe(II) was not associated with biogenic solids or in the aqueous solution. We infer that it may be either adsorbed onto surfaces of nontronite particles/bacteria or in the structure of nontronite. Furthermore, we have demonstrated that natural nontronite clays were capable of

  1. Targeting Autotrophic and Lithotrophic Microorganisms from Fumarolic Ice Caves of Mt. Erebus, Antarctica

    Science.gov (United States)

    Anitori, R.; Davis, R.; Connell, L.; Kelley, M.; Staudigel, H.; Tebo, B. M.

    2011-12-01

    Terrestrial and aquatic volcanic oligotrophic environments can host microorganisms that obtain their energy from reduced inorganic chemicals present in volcanic rocks and soils. We sampled basaltic rock from terrestrial Dark Oligotrophic Volcanic Ecosystems (DOVEs) located in two fumarole ice caves, Warren and Warren West, located near the summit of Mt. Erebus, Antarctica. For reference, we sampled a similar cave, Harry's Dream, which receives continuous light during the Austral summer. We report here culturing data for bacterial and eukaryotic microbes from rocky soils in these caves when targeting lithotrophic organisms using media containing reduced inorganic compounds (Mn2+, Fe2+, NH4+). In addition, to test for the possible presence of inorganic carbon fixation, we screened samples for the ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) gene. Culturing of soil samples on media targeting both autotrophs and heterotrophs yielded a diverse collection of generally slow-growing colonies of bacteria (majority), fungi and non-fungal eukaryotes. Manganese(II)-oxidizing colonies were identified in Warren and Harry's Dream, and these exhibited two colony morphotypes upon subculturing. Sequencing of the PCR amplified 16S rRNA gene identified a bacterium distantly related to Pseudonocardia sp., a genus with known manganese oxidizers. Other bacteria enriched included members of the Actinobacteria, Alphaproteobacteria and Betaproteobacteria. There was a low diversity in cultured eukaryotes representing several potential undescribed species (Geomyces sp., Penicillium sp.) and isolates that may represent alternate, previously undescribed habitats and forms (Psilolechia leprosa, Alternaria alternata). One Warren isolate was a 99% 16S rRNA match to the N2 fixer Bradyrhizobium sp.; when inoculated into liquid medium specific for N2 fixers, growth was maintained upon subculture. Putative iron oxidizers were also enriched from the two DOVE caves, using slush agar iron

  2. Fe(II) sorption on pyrophyllite: Effect of structural Fe(III) (impurity) in pyrophyllite on nature of layered double hydroxide (LDH) secondary mineral formation

    Energy Technology Data Exchange (ETDEWEB)

    Starcher, Autumn N.; Li, Wei; Kukkadapu, Ravi K.; Elzinga, Evert J.; Sparks, Donald L.

    2016-11-01

    Fe(II)-Al(III)-LDH (layered double hydroxide) phases have been shown to form from reactions of aqueous Fe(II) with Fe-free Al-bearing minerals (phyllosilicate/clays and Al-oxides). To our knowledge, the effect of small amounts of structural Fe(III) impurities in “neutral” clays on such reactions, however, were not studied. In this study to understand the role of structural Fe(III) impurity in clays, laboratory batch studies with pyrophyllite (10 g/L), an Al-bearing phyllosilicate, containing small amounts of structural Fe(III) impurities and 0.8 mM and 3 mM Fe(II) (both natural and enriched in 57Fe) were carried out at pH 7.5 under anaerobic conditions (4% H2 – 96% N2 atmosphere). Samples were taken up to 4 weeks for analysis by Fe-X-ray absorption spectroscopy and 57Fe Mössbauer spectroscopy. In addition to the precipitation of Fe(II)-Al(III)-LDH phases as observed in earlier studies with pure minerals (no Fe(III) impurities in the minerals), the analyses indicated formation of small amounts of Fe(III) containing solid(s), most probably hybrid a Fe(II)-Al(III)/Fe(III)-LDH phase. The mechanism of Fe(II) oxidation was not apparent but most likely was due to interfacial electron transfer from the sorbed Fe(II) to the structural Fe(III) and/or surface-sorption-induced electron-transfer from the sorbed Fe(II) to the clay lattice. Increase in the Fe(II)/Al ratio of the LDH with reaction time further indicated the complex nature of the samples. This research provides evidence for the formation of both Fe(II)-Al(III)-LDH and Fe(II)-Fe(III)/Al(III)-LDH-like phases during reactions of Fe(II) in systems that mimic the natural environments. Better understanding Fe phase formation in complex laboratory studies will improve models of natural redox systems.

  3. 454-Pyrosequencing Analysis of Bacterial Communities from Autotrophic Nitrogen Removal Bioreactors Utilizing Universal Primers: Effect of Annealing Temperature

    Directory of Open Access Journals (Sweden)

    Alejandro Gonzalez-Martinez

    2015-01-01

    Full Text Available Identification of anaerobic ammonium oxidizing (anammox bacteria by molecular tools aimed at the evaluation of bacterial diversity in autotrophic nitrogen removal systems is limited by the difficulty to design universal primers for the Bacteria domain able to amplify the anammox 16S rRNA genes. A metagenomic analysis (pyrosequencing of total bacterial diversity including anammox population in five autotrophic nitrogen removal technologies, two bench-scale models (MBR and Low Temperature CANON and three full-scale bioreactors (anammox, CANON, and DEMON, was successfully carried out by optimization of primer selection and PCR conditions (annealing temperature. The universal primer 530F was identified as the best candidate for total bacteria and anammox bacteria diversity coverage. Salt-adjusted optimum annealing temperature of primer 530F was calculated (47°C and hence a range of annealing temperatures of 44–49°C was tested. Pyrosequencing data showed that annealing temperature of 45°C yielded the best results in terms of species richness and diversity for all bioreactors analyzed.

  4. Anaerobic humus and Fe(III) reduction and electron transport pathway by a novel humus-reducing bacterium, Thauera humireducens SgZ-1.

    Science.gov (United States)

    Ma, Chen; Yu, Zhen; Lu, Qin; Zhuang, Li; Zhou, Shun-Gui

    2015-04-01

    In this study, an anaerobic batch experiment was conducted to investigate the humus- and Fe(III)-reducing ability of a novel humus-reducing bacterium, Thauera humireducens SgZ-1. Inhibition tests were also performed to explore the electron transport pathways with various electron acceptors. The results indicate that in anaerobic conditions, strain SgZ-1 possesses the ability to reduce a humus analog, humic acids, soluble Fe(III), and Fe(III) oxides. Acetate, propionate, lactate, and pyruvate were suitable electron donors for humus and Fe(III) reduction by strain SgZ-1, while fermentable sugars (glucose and sucrose) were not. UV-visible spectra obtained from intact cells of strain SgZ-1 showed absorption peaks at 420, 522, and 553 nm, characteristic of c-type cytochromes (cyt c). Dithionite-reduced cyt c was reoxidized by Fe-EDTA and HFO (hydrous ferric oxide), which suggests that cyt c within intact cells of strain SgZ-1 has the ability to donate electrons to extracellular Fe(III) species. Inhibition tests revealed that dehydrogenases, quinones, and cytochromes b/c (cyt b/c) were involved in reduction of AQS (9, 10-anthraquinone-2-sulfonic acid, humus analog) and oxygen. In contrast, only NADH dehydrogenase was linked to electron transport to HFO, while dehydrogenases and cyt b/c were found to participate in the reduction of Fe-EDTA. Thus, various different electron transport pathways are employed by strain SgZ-1 for different electron acceptors. The results from this study help in understanding the electron transport processes and environmental responses of the genus Thauera.

  5. Fe(III) solar light induced degradation of diethyl phthalate (DEP) in aqueous solution

    Energy Technology Data Exchange (ETDEWEB)

    Mailhot, G.; Caceres, J.; Malato, S.; Bolte, M.

    2003-07-01

    The degradation of diethyl phthalate (DEP) photoinduced by Fe(III) in aqueous solution has been investigated under solar irradiation in the CPC reactor at Plataforma Solar de Almeria. Hydroxyl radicals OH, responsible of the degradation, are formed via an intramolecular photo redox process in excited Fe(III) aqua complexes. For prolonged irradiations DEP and its photoproducts are completely mineralized due to the regeneration of the absorbing species and the continuous formation of OH radicals that confers a catalytic aspect to the process. Consequently, the degradation photoinduced by Fe(III) could be an efficient method of DEP removal from water. (Author) 28 refs.

  6. Production of poly(D-3-hydroxybutyrate) from CO(2), H(2), and O(2) by high cell density autotrophic cultivation of Alcaligenes eutrophus.

    Science.gov (United States)

    Tanaka, K; Ishizaki, A; Kanamaru, T; Kawano, T

    1995-02-05

    Hydrogen-oxidizing bacterium, Alcaligenes eutrophus autotrophically produces biodegradable plastic material, poly(D-3-hydroxybutyrate), P(3HB), from carbon dioxide, hydrogen, and oxygen. In autotrophic cultivation of the microorganism, it is essential to eliminate possible occurrence of gas explosions from the fermentation process. We developed a bench-plant scale, recycled-gas, closed-circuit culture system equipped with several safety features to perform autotrophic cultivation of A. eutrophus by maintaining the oxygen concentration in the substrate gas phase below the lower limit for a gas explosion (6.9%). The culture vessel utilized a baskettype agitator, resulting in a K(L) a value of 2970 h(-1). Oxygen gas was also directly fed to the fermentor separately from the other gases. As a result, 91.3 g . dm(-3) of the cells and 61.9 g . dm(-3) of P(3HB) were obtained after 40 h of cultivation under this oxygen-limited condition. The results compared favorably with those reported for mass production of P(3HB) by heterotrophic fermentation. (c) 1995 John Wiley & Sons, Inc.

  7. Autotrophic carbon dioxide fixation via the Calvin-Benson-Bassham cycle by the denitrifying methanotroph "Candidatus Methylomirabilis oxyfera".

    Science.gov (United States)

    Rasigraf, Olivia; Kool, Dorien M; Jetten, Mike S M; Sinninghe Damsté, Jaap S; Ettwig, Katharina F

    2014-04-01

    Methane is an important greenhouse gas and the most abundant hydrocarbon in the Earth's atmosphere. Methanotrophic microorganisms can use methane as their sole energy source and play a crucial role in the mitigation of methane emissions in the environment. "Candidatus Methylomirabilis oxyfera" is a recently described intra-aerobic methanotroph that is assumed to use nitric oxide to generate internal oxygen to oxidize methane via the conventional aerobic pathway, including the monooxygenase reaction. Previous genome analysis has suggested that, like the verrucomicrobial methanotrophs, "Ca. Methylomirabilis oxyfera" encodes and transcribes genes for the Calvin-Benson-Bassham (CBB) cycle for carbon assimilation. Here we provide multiple independent lines of evidence for autotrophic carbon dioxide fixation by "Ca. Methylomirabilis oxyfera" via the CBB cycle. The activity of ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO), a key enzyme of the CBB cycle, in cell extracts from an "Ca. Methylomirabilis oxyfera" enrichment culture was shown to account for up to 10% of the total methane oxidation activity. Labeling studies with whole cells in batch incubations supplied with either (13)CH4 or [(13)C]bicarbonate revealed that "Ca. Methylomirabilis oxyfera" biomass and lipids became significantly more enriched in (13)C after incubation with (13)C-labeled bicarbonate (and unlabeled methane) than after incubation with (13)C-labeled methane (and unlabeled bicarbonate), providing evidence for autotrophic carbon dioxide fixation. Besides this experimental approach, detailed genomic and transcriptomic analysis demonstrated an operational CBB cycle in "Ca. Methylomirabilis oxyfera." Altogether, these results show that the CBB cycle is active and plays a major role in carbon assimilation by "Ca. Methylomirabilis oxyfera" bacteria. Our results suggest that autotrophy might be more widespread among methanotrophs than was previously assumed and implies that a methanotrophic

  8. The effect of SRT on nitrate formation during autotrophic nitrogen removal of anaerobically treated wastewater.

    Science.gov (United States)

    Lee, Po-Heng; Kwak, Wonji; Bae, Jeaho; McCarty, Perry L

    2013-01-01

    Autotrophic nitrogen removal, coupling nitritation (ammonium to nitrite) with anaerobic ammonium oxidation (anammox), offers a promising nitrogen-removal alternative, especially for post-treatment of anaerobically-treated wastewater. However, previous reports suggest that less than 90% total nitrogen removal should be expected with this process alone because over 10% of the ammonium removed will be converted to nitrate. This is caused because nitrite conversion to nitrate is required for reduction of carbon dioxide to cell carbon. However, recent research results suggest that more limited nitrate formation of only a few per cent sometimes occurs. It was hypothesized such lower nitrate yields may result from use of long solids retention times (SRT) where net biological yields are low, and providing that the ratio of oxygen added to influent ammonium concentrations is maintained at or below 0.75 mol/mol. Overall reaction equations were developed for each process and combined to evaluate the potential effect of SRT on process stoichiometry. The results support the use of a long SRT to reduce net cell yield, which in turn results in a small percentage conversion to nitrate during ammonium removal and high total nitrogen removals in the range of 90 to 94%.

  9. Analysis of the core genome and pan-genome of autotrophic acetogenic bacteria

    Directory of Open Access Journals (Sweden)

    JongOh Shin

    2016-09-01

    Full Text Available Acetogens are obligate anaerobic bacteria capable of reducing carbon dioxide (CO2 to multicarbon compounds coupled to the oxidation of inorganic substrates, such as hydrogen (H2 or carbon monoxide (CO, via the Wood-Ljungdahl pathway. Owing to the metabolic capability of CO2 fixation, much attention has been focused on understanding the unique pathways associated with acetogens, particularly their metabolic coupling of CO2 fixation to energy conservation. Most known acetogens are phylogenetically and metabolically diverse bacteria present in 23 different bacterial genera. With the increased volume of available genome information, acetogenic bacterial genomes can be analyzed by comparative genome analysis. Even with the genetic diversity that exists among acetogens, the Wood-Ljungdahl pathway, a central metabolic pathway, and cofactor biosynthetic pathways are highly conserved for autotrophic growth. Additionally, comparative genome analysis revealed that most genes in the acetogen-specific core genome were associated with the Wood-Ljungdahl pathway. The conserved enzymes and those predicted as missing can provide insight into biological differences between acetogens and allow for the discovery of promising candidates for industrial applications.

  10. Analysis of the Core Genome and Pan-Genome of Autotrophic Acetogenic Bacteria

    Science.gov (United States)

    Shin, Jongoh; Song, Yoseb; Jeong, Yujin; Cho, Byung-Kwan

    2016-01-01

    Acetogens are obligate anaerobic bacteria capable of reducing carbon dioxide (CO2) to multicarbon compounds coupled to the oxidation of inorganic substrates, such as hydrogen (H2) or carbon monoxide (CO), via the Wood-Ljungdahl pathway. Owing to the metabolic capability of CO2 fixation, much attention has been focused on understanding the unique pathways associated with acetogens, particularly their metabolic coupling of CO2 fixation to energy conservation. Most known acetogens are phylogenetically and metabolically diverse bacteria present in 23 different bacterial genera. With the increased volume of available genome information, acetogenic bacterial genomes can be analyzed by comparative genome analysis. Even with the genetic diversity that exists among acetogens, the Wood-Ljungdahl pathway, a central metabolic pathway, and cofactor biosynthetic pathways are highly conserved for autotrophic growth. Additionally, comparative genome analysis revealed that most genes in the acetogen-specific core genome were associated with the Wood-Ljungdahl pathway. The conserved enzymes and those predicted as missing can provide insight into biological differences between acetogens and allow for the discovery of promising candidates for industrial applications. PMID:27733845

  11. A low volumetric exchange ratio allows high autotrophic nitrogen removal in a sequencing batch reactor.

    Science.gov (United States)

    De Clippeleir, Haydée; Vlaeminck, Siegfried E; Carballa, Marta; Verstraete, Willy

    2009-11-01

    Sequencing batch reactors (SBRs) have several advantages, such as a lower footprint and a higher flexibility, compared to biofilm based reactors, such as rotating biological contactors. However, the critical parameters for a fast start-up of the nitrogen removal by oxygen-limited autotrophic nitrification/denitrification (OLAND) in a SBR are not available. In this study, a low critical minimum settling velocity (0.7 m h(-1)) and a low volumetric exchange ratio (25%) were found to be essential to ensure a fast start-up, in contrast to a high critical minimum settling velocity (2 m h(-1)) and a high volumetric exchange ratio (40%) which yielded no successful start-up. To prevent nitrite accumulation, two effective actions were found to restore the microbial activity balance between aerobic and anoxic ammonium-oxidizing bacteria (AerAOB and AnAOB). A daily biomass washout at a critical minimum settling velocity of 5 m h(-1) removed small aggregates rich in AerAOB activity, and the inclusion of an anoxic phase enhanced the AnAOB to convert the excess nitrite. This study showed that stable physicochemical conditions were needed to obtain a competitive nitrogen removal rate of 1.1 g N L(-1) d(-1).

  12. A dicarboxylate/4-hydroxybutyrate autotrophic carbon assimilation cycle in the hyperthermophilic Archaeum Ignicoccus hospitalis

    OpenAIRE

    Huber, Harald; Gallenberger, Martin; Jahn, Ulrike; Eylert, Eva; Berg, Ivan A.; Kockelkorn, Daniel; Eisenreich, Wolfgang; Fuchs, Georg

    2008-01-01

    Ignicoccus hospitalis is an anaerobic, autotrophic, hyperthermophilic Archaeum that serves as a host for the symbiotic/parasitic Archaeum Nanoarchaeum equitans. It uses a yet unsolved autotrophic CO2 fixation pathway that starts from acetyl-CoA (CoA), which is reductively carboxylated to pyruvate. Pyruvate is converted to phosphoenol-pyruvate (PEP), from which glucogenesis as well as oxaloacetate formation branch off. Here, we present the complete metabolic cycle by which the primary CO2 acce...

  13. Substrate preference, uptake kinetics and bioenergetics in a facultatively autotrophic, thermoacidophilic crenarchaeote.

    Science.gov (United States)

    Urschel, Matthew R; Hamilton, Trinity L; Roden, Eric E; Boyd, Eric S

    2016-05-01

    Facultative autotrophs are abundant components of communities inhabiting geothermal springs. However, the influence of uptake kinetics and energetics on preference for substrates is not well understood in this group of organisms. Here, we report the isolation of a facultatively autotrophic crenarchaeote, strain CP80, from Cinder Pool (CP, 88.7°C, pH 4.0), Yellowstone National Park. The 16S rRNA gene sequence from CP80 is 98.8% identical to that from Thermoproteus uzonensis and is identical to the most abundant sequence identified in CP sediments. Strain CP80 reduces elemental sulfur (S8°) and demonstrates hydrogen (H2)-dependent autotrophic growth. H2-dependent autotrophic activity is suppressed by amendment with formate at a concentration in the range of 20-40 μM, similar to the affinity constant determined for formate utilization. Synthesis of a cell during growth with low concentrations of formate required 0.5 μJ compared to 2.5 μJ during autotrophic growth with H2 These results, coupled to data indicating greater C assimilation efficiency when grown with formate as compared to carbon dioxide, are consistent with preferential use of formate for energetic reasons. Collectively, these results provide new insights into the kinetic and energetic factors that influence the physiology and ecology of facultative autotrophs in high-temperature acidic environments.

  14. Investigation of mixotrophic, heterotrophic, and autotrophic growth of Chlorella vulgaris under agricultural waste medium.

    Science.gov (United States)

    Mohammad Mirzaie, M A; Kalbasi, M; Mousavi, S M; Ghobadian, B

    2016-01-01

    Growth of Chlorella vulgaris and its lipid production were investigated under autotrophic, heterotrophic, and mixotrophic conditions. Cheap agricultural waste molasses and corn steep liquor from industries were used as carbon and nitrogen sources, respectively. Chlorella vulgaris grew remarkably under this agricultural waste medium, which resulted in a reduction in the final cost of the biodiesel production. Maximum dry weight of 2.62 g L(-1) was obtained in mixotrophic growth with the highest lipid concentration of 0.86 g L(-1). These biomass and lipid concentrations were, respectively, 140% and 170% higher than autotrophic growth and 300% and 1200% higher than heterotrophic growth. In mixotrophic growth, independent or simultaneous occurrence of autotrophic and heterotrophic metabolisms was investigated. The growth of the microalgae was observed to take place first heterotrophically to a minimum substrate concentration with a little fraction in growth under autotrophic metabolism, and then the cells grew more autotrophically. It was found that mixotrophic growth was not a simple combination of heterotrophic and autotrophic growth.

  15. Bioremediation of toxic heavy metals using acidothermophilic autotrophes.

    Science.gov (United States)

    Umrania, Valentina V

    2006-07-01

    Investigations were carried out to isolate microbial strains from soil, mud and water samples from metallurgically polluted environment for bioremediation of toxic heavy metals. As a result of primary and secondary screening various 72 acidothermophilic autotrophic microbes were isolated and adapted for metal tolerance and biosorption potentiality. The multi-metal tolerance was developed with higher gradient of concentrations of Ag, As, Bi, Cd, Cr, Co, Cu, Hg, Li, Mo, Pb, Sn and Zn. The isolates were checked for their biosolubilization ability with copper containing metal sulfide ores. In case of chalcopyrite 85.82% and in covellite as high as 97.5% copper solubilization occurred in presence of 10(-3) M multi-heavy metals on fifth day at 55 degrees C and pH 2.5. Chemical analyses were carried out by inductively coupled plasma spectroscopy (ICP) for metal absorption. The selected highly potential isolate (ATh-14) showed maximum adsorption of Ag 73%, followed by Pb 35%, Zn 34%, As 19%, Ni 15% and Cr 9% in chalcopyrite.

  16. Intercalation of Coordinatively Unsaturated Fe(III) Ion within Interpenetrated Metal-Organic Framework MOF-5.

    Science.gov (United States)

    Holmberg, Rebecca J; Burns, Thomas; Greer, Samuel M; Kobera, Libor; Stoian, Sebastian A; Korobkov, Ilia; Hill, Stephen; Bryce, David L; Woo, Tom K; Murugesu, Muralee

    2016-06-01

    Coordinatively unsaturated Fe(III) metal sites were successfully incorporated into the iconic MOF-5 framework. This new structure, Fe(III) -iMOF-5, is the first example of an interpenetrated MOF linked through intercalated metal ions. Structural characterization was performed with single-crystal and powder XRD, followed by extensive analysis by spectroscopic methods and solid-state NMR, which reveals the paramagnetic ion through its interaction with the framework. EPR and Mössbauer spectroscopy confirmed that the intercalated ions were indeed Fe(III) , whereas DFT calculations were employed to ascertain the unique pentacoordinate architecture around the Fe(III) ion. Interestingly, this is also the first crystallographic evidence of pentacoordinate Zn(II) within the MOF-5 SBU. This new MOF structure displays the potential for metal-site addition as a framework connector, thus creating further opportunity for the innovative development of new MOF materials.

  17. Speciation of Fe(II) and Fe(III) by the modified ferrozine method, FIA-spectrophotometry, and flame AAS after cloud-point extraction

    Energy Technology Data Exchange (ETDEWEB)

    Giokas, Dimosthenis L.; Paleologos, Evangelos K.; Karayannis, Miltiades I. [Laboratory of Analytical Chemistry, Department of Chemistry, University of Ioannina (Greece)

    2002-07-01

    A method has been developed for the simultaneous determination of traces of Fe(III) and Fe(II) in water by on-line coupling of spectrophotometry with flame atomic absorption spectrometry (FAAS). The method involves cloud-point extraction (CPE) of both species with ammonium pyrrolidinecarbodithioate (APDC) under standard conditions, which facilitates the in situ complexation and extraction of both species. Differentiation of the oxidation states of iron is achieved by using mathematical equations to overcome the interference of Fe(III) in the spectrophotometric determination of Fe(II) when they are both present in the same solution. In this manner the time-consuming and labor-intensive steps of preoxidation of Fe(II) or reduction of Fe(III) are eliminated. By preconcentrating a 10-mL sample solution detection limits as low as 7 {mu}g L{sup -1}, were obtained after a single-step extraction procedure. The relative standard deviation (n=4, 30 {mu}g L{sup -1}) was 2.6 % and 1.8 % for spectrophotometry and FAAS, respectively. Recoveries in the range of 96-105 % were obtained by analysis of spiked real samples. The method was further verified by analyzing a certified reference material (IMEP-9); for this the recovery was 98.5 %. (orig.)

  18. Physiology of Haloalkaliphilic Sulfur-oxidizing Bacteria

    NARCIS (Netherlands)

    Banciu, H.L.

    2004-01-01

    The inorganic sulfur oxidation by obligate haloalkaliphilic chemolithoautotrophs was only recently discovered and investigated. These autotrophic sulfur oxidizing bacteria (SOB), capable of oxidation of inorganic sulfur compounds at moderate to high salt concentration and at high pH, can be divided

  19. Binding of the Trace Elements: Cu(II) and Fe(III) to the Native and Modified Nutritive Potato Starches Studied by EPR

    Science.gov (United States)

    Śmigielska, H.; Lewandowicz, G.; Goslar, J.; Hoffmann, S. K.

    2006-08-01

    The Cu(II) and Fe(III) ions have been adsorbed by four potato starches of different degrees of oxidation (different numbers of COOH groups replacing host CH2OH groups): native (no oxidized), white (pudding) with oxidation degree of 0.04%, gelating (0.1%), and LUBOX starch (0.5%). Concentration of the ions in starches was determined from atomic absorption and EPR spectrum intensity. For small concentration of the adsorbed ions (below 4 mg/g) nearly all ions are adsorbed from the solution. EPR shows that adsorbed copper(II) ions are chemically bonded to the starch molecules (preferably) at COOH sites and uniformly dispersed in the starch structure. The complexes are typical of octahedral or square-quadratic coordination with spin-Hamiltonian parameters gǁ=2.373, g⊥= 2.080, Aǁ=12.1 mT, A⊥=1.0 mT. For higher concentrations the Cu(II) displays a tendency to clustering. Iron(III) ions are introduced into starch in a form of clusters mainly, even for the smallest concentration. The highest concentrations of both Cu(II) and Fe(III) were observed in LUBOX starch having the highest degree of oxidation.

  20. A review of the global relationship among freshwater fish, autotrophic activity, and regional climate

    Science.gov (United States)

    Deines, Andrew M.; Bunnell, David B.; Rogers, Mark W.; Beard, T. Douglas; Taylor, William W.

    2015-01-01

    The relationship between autotrophic activity and freshwater fish populations is an important consideration for ecologists describing trophic structure in aquatic communities, fisheries managers tasked with increasing sustainable fisheries development, and fish farmers seeking to maximize production. Previous studies of the empirical relationships of autotrophic activity and freshwater fish yield have found positive relationships but were limited by small sample sizes, small geographic scopes, and the inability to compare patterns among many types of measurement techniques. Individual studies and reviews have also lacked consistent consideration of regional climate factors which may inform relationships between fisheries and autotrophic activity. We compiled data from over 700 freshwater systems worldwide and used meta-analysis and linear models to develop a comprehensive global synthesis between multiple metrics of autotrophic activity, fisheries, and climate indicators. Our results demonstrate that multiple metrics of fish (i.e., catch per unit effort, yield, and production) increase with autotrophic activity across a variety of fisheries. At the global scale additional variation in this positive relationship can be ascribed to regional climate differences (i.e., temperature and precipitation) across systems. Our results provide a method and proof-of-concept for assessing inland fisheries production at the global scale, where current estimates are highly uncertain, and may therefore inform the continued sustainable use of global inland fishery resources.

  1. Iron Isotope Fractionations Reveal a Finite Bioavailable Fe Pool for Structural Fe(III) Reduction in Nontronite.

    Science.gov (United States)

    Shi, Bingjie; Liu, Kai; Wu, Lingling; Li, Weiqiang; Smeaton, Christina M; Beard, Brian L; Johnson, Clark M; Roden, Eric E; Van Cappellen, Philippe

    2016-08-16

    We report on stable Fe isotope fractionation during microbial and chemical reduction of structural Fe(III) in nontronite NAu-1. (56)Fe/(54)Fe fractionation factors between aqueous Fe(II) and structural Fe(III) ranged from -1.2 to +0.8‰. Microbial (Shewanella oneidensis and Geobacter sulfurreducens) and chemical (dithionite) reduction experiments revealed a two-stage process. Stage 1 was characterized by rapid reduction of a finite Fe(III) pool along the edges of the clay particles, accompanied by a limited release to solution of Fe(II), which partially adsorbed onto basal planes. Stable Fe isotope compositions revealed that electron transfer and atom exchange (ETAE) occurred between edge-bound Fe(II) and octahedral (structural) Fe(III) within the clay lattice, as well as between aqueous Fe(II) and structural Fe(III) via a transient sorbed phase. The isotopic fractionation factors decreased with increasing extent of reduction as a result of the depletion of the finite bioavailable Fe(III) pool. During stage 2, microbial reduction was inhibited while chemical reduction continued. However, further ETAE between aqueous Fe(II) and structural Fe(III) was not observed. Our results imply that the pool of bioavailable Fe(III) is restricted to structural Fe sites located near the edges of the clay particles. Blockage of ETAE distinguishes Fe(III) reduction of layered clay minerals from that of Fe oxyhydroxides, where accumulation of structural Fe(II) is much more limited.

  2. Co-modification of F{sup −} and Fe(III) ions as a facile strategy towards effective separation of photogenerated electrons and holes

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Xuefei; Yu, Rui; Wang, Ping; Chen, Feng [School of Chemistry, Chemical Engineering and Life Sciences, Wuhan University of Technology, Wuhan 430070 (China); Yu, Huogen, E-mail: yuhuogen@whut.edu.cn [School of Chemistry, Chemical Engineering and Life Sciences, Wuhan University of Technology, Wuhan 430070 (China); State Key Laboratory of Silicate Materials for Architectures, Wuhan University of Technology, Wuhan 430070 (China)

    2015-10-01

    Graphical abstract: - Highlights: • The Fe(III)/F-TiO{sub 2} photocatalyst was prepared by a facile, wet chemical method. • Fe(III)/F-TiO{sub 2} exhibited higher photocatalytic activity than TiO{sub 2}, Fe(III)/TiO{sub 2} and F-TiO{sub 2}. • The synergistic effect of Fe(III) and F ions contributed to the enhanced activity of TiO{sub 2}. - Abstract: The combination of cocatalysts for simultaneously promoting rapid transfer of photogenerated electrons and holes is one of the effective strategies to improve photocatalytic activity of semiconductor photocatalysts. In this study, highly efficient TiO{sub 2} photocatalyst with co-modification of F and Fe(III) ions was prepared by a facile two wet-chemical method including Fe(III) ions impregnation and then F-ion adsorption on the TiO{sub 2} surface. The photocatalytic results demonstrated that the simultaneously modified Fe(III)/F-TiO{sub 2} photocatalyst exhibited obvious enhancement of photocatalytic performance compared with the pure TiO{sub 2} and single-component modified Fe(III)/TiO{sub 2} and F-TiO{sub 2}. Based on the present experimental results, we propose a possible synergistic effect of Fe(III) and F ions to illustrate the enhanced photocatalytic activity of Fe(III)/F-TiO{sub 2} photocatalyst, namely the Fe(III) ions act as effective active sites to rapidly transfer the photogenerated electrons in the CB of TiO{sub 2} and then reduce oxygen, while F ions work as other effective active sites to rapidly transfer the photogenerated holes in the VB of TiO{sub 2} and then form free hydroxide radical to oxidize the organic substances. As a result, the transfer rate and the interfacial catalytic reaction of photogenerated electrons and holes were simultaneously accelerated, which resulted in the enhanced photocatalytic performance of Fe(III)/F-TiO{sub 2} photocatalyst. Due to the low cost and abundant resource of Fe and F, the obtained photocatalyst is promising for practical application. Furthermore, the

  3. Autotrophic antimonate bio-reduction using hydrogen as the electron donor.

    Science.gov (United States)

    Lai, Chun-Yu; Wen, Li-Lian; Zhang, Yin; Luo, Shan-Shan; Wang, Qing-Ying; Luo, Yi-Hao; Chen, Ran; Yang, Xiaoe; Rittmann, Bruce E; Zhao, He-Ping

    2016-01-01

    Antimony (Sb), a toxic metalloid, is soluble as antimonate (Sb(V)). While bio-reduction of Sb(V) is an effective Sb-removal approach, its bio-reduction has been coupled to oxidation of only organic electron donors. In this study, we demonstrate, for the first time, the feasibility of autotrophic microbial Sb(V) reduction using hydrogen gas (H2) as the electron donor without extra organic carbon source. SEM and EDS analysis confirmed the production of the mineral precipitate Sb2O3. When H2 was utilized as the electron donor, the consortium was able to fully reduce 650 μM of Sb(V) to Sb(III) in 10 days, a rate comparable to the culture using lactate as the electron donor. The H2-fed culture directed a much larger fraction of it donor electrons to Sb(V) reduction than did the lactate-fed culture. While 98% of the electrons from H2 were used to reduce Sb(V) by the H2-fed culture, only 12% of the electrons from lactate was used to reduce Sb(V) by the lactate-fed culture. The rest of the electrons from lactate went to acetate and propionate through fermentation, to methane through methanogenesis, and to biomass synthesis. High-throughput sequencing confirmed that the microbial community for the lactate-fed culture was much more diverse than that for the H2-fed culture, which was dominated by a short rod-shaped phylotype of Rhizobium (α-Protobacteria) that may have been active in Sb(V) reduction.

  4. Bioavailability of Fe(III) in natural soils and the impact on mobility of inorganic contaminants

    Energy Technology Data Exchange (ETDEWEB)

    Kosson, David S.; Cowan, Robert M.; Young, Lily Y.; Hacherl, Eric L.; Scala, David J.

    2002-10-03

    Inorganic contaminants, such as heavy metals and radionuclides, can adhere to insoluble Fe(III) minerals resulting in decreased mobility of these contaminants through subsurface environments. Dissimilatory Fe(III)-reducing bacteria (DIRB), by reducing insoluble Fe(III) to soluble Fe(II), may enhance contaminant mobility. The Savannah River Site, South Carolina (SRS), has been subjected to both heavy metal and radionuclide contamination. The overall objective of this project is to investigate the release of inorganic contaminants such as heavy metals and radionuclides that are bound to solid phase soil Fe complexes and to elucidate the mechanisms for mobilization of these contaminants that can be associated with microbial Fe(III) reduction. This is being accomplished by (i) using uncontaminated and contaminated soils from SRS as prototype systems, (ii) evaluating the diversity of DIRBs within the samples and isolating cultures for further study, (iii) using batch microcosms to evaluate the bioavailability of Fe(III) from pure minerals and SRS soils, (iv) developing kinetic and mass transfer models that reflect the system dynamics, and (v) carrying out soil column studies to elucidate the dynamics and interactions amongst Fe(III) reduction, remineralization and contaminant mobility.

  5. Autotrophic and heterotrophic activity in Arctic first-year sea ice

    DEFF Research Database (Denmark)

    Søgaard, Dorte Haubjerg; Kristensen, Morten; Rysgaard, Søren;

    2010-01-01

    We present a study of autotrophic and heterotrophic activities of Arctic sea ice (Malene Bight, SW Greenland) as measured by 2 different approaches: (1) standard incubation techniques (H14CO3– and [3H]thymidine incubation) on sea ice cores brought to the laboratory and (2) cores incubated in situ...... in plastic bags with subsequent melting and measurements of changes in total O2 concentrations. The standard incubations showed that the annual succession followed a distinctive pattern, with a low, almost balancing heterotrophic and autotrophic activity during February and March. This period was followed...... March and April, it resulted in a significant net oxygen accumulation in the bag incubations. Integrated over the entire season, the sea ice of Malene Bight was net autotrophic with an annual net carbon fixation of 220 mg C m– 2, reflecting the net result of a sea ice-related gross primary production...

  6. Heterogeneous biomimetic catalysis using iron porphyrin for cyclohexane oxidation promoted by chitosan

    Science.gov (United States)

    Huang, Guan; Liu, Yao; Cai, Jing Li; Chen, Xiang Feng; Zhao, Shu Kai; Guo, Yong An; Wei, Su Juan; Li, Xu

    2017-04-01

    This study investigates how ligands modulate metalloporphyrin activity with the goal of producing a practical biomimetic catalyst for use in the chemical industry. We immobilized iron porphyrinate [iron-tetrakis-(4-sulfonatophenyl)-porphyrin; Fe(III) (TPPS)] on powdered chitosan (pd-CTS) to form an immobilized catalyst Fe(III) (TPPS)/pd-CTS, which was characterized using modern spectroscopic techniques and used for catalytic oxidation of cyclohexane with O2. Amino coordination to iron porphyrin in Fe(III) (TPPS)/pd-CTS altered the electron cloud density around the iron cation, probably by reducing the activation energy of Fe(III) (TPPS) and raising the reactivity of the iron ion catalytic center, thereby improving the catalytic efficiency. One milligram of Fe(III) (TPPS) catalyst can be reused three times for the oxidation reaction to yield an average of 22.9 mol% of cyclohexanone and cyclohexanol.

  7. Bacterial domination over Archaea in ammonia oxidation in a monsoon-driven tropical estuary

    Digital Repository Service at National Institute of Oceanography (India)

    Vipindas, P.V.; Anas, A.; Jasmin, C.; Lallu, K.R.; Fausia, K.H.; Balachandran, K.K.; Muraleedharan, K.R.; Nair, S.

    Autotrophic ammonia oxidizing microorganisms,which are responsible for the rate-limiting step of nitrification in most aquatic systems, have not been studied in tropical estuaries. Cochin estuary (CE) is one of the largest, productive, and monsoon...

  8. Autotrophic and heterotrophic activity in Arctic first-year sea-ice: Seasonal study from Marlene Bight, SW Greenland

    DEFF Research Database (Denmark)

    Søgaard, Dorte Haubjerg; Kristensen, Morten; Rysgaard, Søren

    2010-01-01

    in situ in plastic bags with subsequent melting and measurements of changes in total O-2 concentrations. The standard incubations showed that the annual succession followed a distinctive pattern, with a low, almost balancing heterotrophic and autotrophic activity during February and March. This period...... was followed by an algal bloom in late March and April, leading to a net autotrophic community. During February and March, the oxygen level in the bag incubations remained constant, validating the low balanced heterotrophic and autotrophic activity. As the autotrophic activity exceeded the heterotrophic...... activity in late March and April, it resulted in a significant net oxygen accumulation in the bag incubations. Integrated over the entire season, the sea ice of Malene Bight was net autotrophic with an annual net carbon fixation of 220 mg C m(-2), reflecting the net result of a sea ice-related gross...

  9. Pyrite oxidation by thermophilic archaebacteria

    Energy Technology Data Exchange (ETDEWEB)

    Larsson, L.; Olsson, G.; Holst, O.; Karlsson, H.T. (Lund Univ. (Sweden))

    1990-03-01

    Three species of thermophilic archaebacteria of the genera Sulfolobus (Sulfolobus acidocaldarius and S. solfataricus) and Acidianus (Acidianus brierleyi) were tested for their ability to oxidize pyrite and to grow autotropbically on pyrite, to explore their potential for use in coal desulfurization. Only A. brierleyi was able to oxidize and grow autotrophically on pyrite. Jarosite was formed during the pyrite oxidation, resulting in the precipitation of sulfate and iron. The medium composition affected the extent of jarosite formation.

  10. Development of novel control strategies for single-stage autotrophic nitrogen removal: A process oriented approach

    DEFF Research Database (Denmark)

    Vangsgaard, Anna Katrine; Mauricio Iglesias, Miguel; Gernaey, Krist;

    2014-01-01

    The autotrophic nitrogen removing granular sludge process is a novel and intensified process. However, its stable operation and control remain a challenging issue. In this contribution, a process oriented approach was used to develop, evaluate and benchmark novel control strategies to ensure stable...

  11. Cathodic biofilm activates electrode surface and achieves efficient autotrophic sulfate reduction

    NARCIS (Netherlands)

    Pozo, Guillermo; Jourdin, Ludovic; Lu, Yang; Keller, Jürg; Ledezma, Pablo; Freguia, Stefano

    2016-01-01

    Recent evidence suggests that autotrophic sulfate reduction could be driven by direct and indirect electron transfer mechanisms in bioelectrochemical systems. However, much uncertainty still exists about the electron fluxes from the electrode to the final electron acceptor sulfate during autotrop

  12. Simultaneous biological removal of sulfide and nitrate by autotrophic denitrification in an activated sludge system

    NARCIS (Netherlands)

    Manconi, I.; Carucci, A.; Lens, P.N.L.; Rossetti, S.

    2006-01-01

    The feasibility of an autotrophic denitrification process in an activated sludge reactor, using sulphide as the electron donor, was tested for simultaneous denitrification and sulphide removal. The reactor was operated at nitrate (N) to sulphide (S) ratios between 0.5 and 0.9 to evaluate their effec

  13. Heterotrophic-autotrophic sequential system for reductive nitrate and perchlorate removal.

    Science.gov (United States)

    Ucar, Deniz; Cokgor, Emine Ubay; Sahinkaya, Erkan

    2016-01-01

    Nitrate and perchlorate were identified as significant water contaminants all over the world. This study aims at evaluating the performances of the heterotrophic-autotrophic sequential denitrification process for reductive nitrate and perchlorate removal from drinking water. The reduced nitrate concentration in the heterotrophic reactor increased with increasing methanol concentrations and the remaining nitrate/nitrite was further removed in the following autotrophic denitrifying process. The performances of the sequential process were studied under varying nitrate loads of [Formula: see text] at a fixed hydraulic retention time of 2 h. The C/N ratio in the heterotrophic reactor varied between 1.24 and 2.77 throughout the study. Nitrate and perchlorate reduced completely with maximum initial concentrations of [Formula: see text] and 1000 µg/L, respectively. The maximum denitrification rate for the heterotrophic reactor was [Formula: see text] when the bioreactor was fed with [Formula: see text] and 277 mg/L methanol. For the autotrophic reactor, the highest denitrification rate was [Formula: see text] in the first period when the heterotrophic reactor performance was low. Perchlorate reduction was initiated in the heterotrophic reactor, but completed in the following autotrophic process. Effluent sulphate concentration was below the drinking water standard level of 250 mg/L and pH was in the neutral level.

  14. Combined removal of sulfur compounds and nitrate by autotrophic denitrication in bioaugmented activated sludge system

    NARCIS (Netherlands)

    Manconi, I.; Carucci, A.; Lens, P.N.L.

    2007-01-01

    An autotrophic denitrification process using reduced sulfur compounds (thiosulfate and sulfide) as electron donor in an activated sludge system is proposed as an efficient and cost effective alternative to conventional heterotrophic denitrification for inorganic (or with low C/N ratio) wastewaters a

  15. [Endogenous respiration process analysis of heterotrophic biomass and autotrophic biomass based on respiration map ].

    Science.gov (United States)

    Li, Zhi-hua; Bai, Xu-li; Zhang, Qin; Liu, Yi; He, Chun-bo

    2014-09-01

    The endogenous process is an important metabolic part of the activated sludge, and the understanding of this process is still unclear. Characteristics of endogenous respiration for heterotrophic bacteria and autotrophic nitrifiers were analyzed using respirogram. Results showed that both heterotrophic and autotrophic bacteria entered the stage of endogenous respiration at almost the same time, but heterotrophic bacteria first entered the stage of dormancy i. e. , they were easier to recover a higher proportion of biomass during the dormancy stage, indicating that heterotrophic bacteria exhibited strong environmental adaptability. Autotrophic bacteria were, however, quite different. This finding confirmed that autotrophic bacteria were more vulnerable from the viewpoint of endogenous respiration. In addition, the study also found that the increase of endogenous respiration rate ratio reflected the decreased sludge activity. And the proportion of endogenous respiration was an important parameter to characterize the activity of activated sludge, which can be used as a quantitative index for the health status of activated sludge. The findings further deepened the understanding of endogenous respiration process and provided a theoretical basis for the operation and management of wastewater treatment plants.

  16. Fluidization velocity assessment of commercially available sulfur particles for use in autotrophic denitrification biofilters

    Science.gov (United States)

    There has been no evaluation of sulfur-based autotrophic denitrification using fluidized biofilters in a recirculating aquaculture system to mitigate nitrate-nitrogen loads. The objectives of this work were to quantify the particle size distribution, specific surface area, and fluidization velocitie...

  17. Experimental effects of grazers on autotrophic species assemblages across a nitrate gradient in Florida springs

    Science.gov (United States)

    Springs face accelerated degradation of ecosystem structure, namely in the form of autotrophic species assemblage shifts from submerged vascular macrophytes to benthic filamentous algae. Increasing nitrate concentrations have been cited as a primary driver of this shift and numeric nutrient criteria...

  18. Autotrophic nitrogen removal from low strength waste water at low temperature

    NARCIS (Netherlands)

    Hendrickx, T.L.G.; Wang, Y.; Kampman, C.; Zeeman, G.; Temmink, B.G.; Buisman, C.J.N.

    2012-01-01

    Direct anaerobic treatment of municipal waste waters allows for energy recovery in the form of biogas. A further decrease in the energy requirement for waste water treatment can be achieved by removing the ammonium in the anaerobic effluent with an autotrophic process, such as anammox. Until now, an

  19. Evaluation of autotrophic and heterotrophic processes in biofilm reactors used for removal of sulphide, nitrate and COD.

    Science.gov (United States)

    Tang, Kimberley; An, Shijie; Nemati, Mehdi

    2010-11-01

    Microbial cultures originated from an oil reservoir were used in three biofilm reactors and effects of sulphide and nitrate loading rates and molar loading ratio on the removal of sulphide, nitrate and acetate, and composition of end products were investigated. Application of biofilms improved sulphide and nitrate removal rates significantly when compared with freely suspended cells. Maximum sulphide and nitrate removal rates under autotrophic conditions were 30.0 and 24.4 mM h(-1), respectively (residence time: 0.5h). Oxidation of acetate occurred only at nitrate to sulphide molar loading ratios around 0.7 or higher when nitrate was present at levels higher than that required for oxidation of sulphide to sulphur. Conversion of sulphide to sulphate increased from 0% to 66% as nitrate to sulphide molar loading ratio was increased from 0.34 to 3.98. The highest nitrate and acetate removal rates in the bioreactor operated under heterotrophic conditions were 183.2 and 88.0 mM h(-1), respectively (residence time: 0.8h).

  20. Influence of geochemical properties and land-use types on the microbial reduction of Fe(III) in subtropical soils.

    Science.gov (United States)

    Liu, Chengshuai; Wang, Yongkui; Li, Fangbai; Chen, Manjia; Zhai, Guangshu; Tao, Liang; Liu, Chuanping

    2014-08-01

    Microbial Fe(III) reduction significantly impacts the geochemical processes and the composition of most subsurface soils. However, up to now, the factors influencing the efficiency of Fe(III) reduction in soils have not been fully described. In this study, soil Fe(III) reduction processes related to geochemical properties and land-use types were systematically investigated using iron-rich soils. The results showed that microbial Fe(III) reduction processes were efficient and their rates varied significantly in different types of soils. Fe(III) reduction rates were 1.1-5.6 times as much in soils with glucose added as in those without glucose. Furthermore, Fe(III) reduction rates were similar in soils from the same parent materials, while they were highest in soils developed from sediments, with a mean rate of 1.87 mM per day when supplemented with glucose. In addition, the Fe(III) reduction rates, reaching 0.99 and 0.59 mM per day on average with and without glucose added, respectively, were higher in the paddy soils affected heavily by human activities than those in the forest soils (average rates of 0.38 and 0.15 mM per day when with and without glucose, respectively). All the soil weathering indices correlated linearly with Fe(III) reduction rates, even though the reduction of iron in soils with higher weathering degrees was partly inhibited by a higher soil protonation trend and fewer available iron reduction sites in the soils, which gives lower reduction rates. These results clearly illustrate that soil Fe(III) reduction rates are greatly dependent on soil geochemical properties and land-use types and help define which soil types exhibit similar degrees of Fe(III) reduction under field conditions.

  1. Development of biological platform for the autotrophic production of biofuels

    Science.gov (United States)

    Khan, Nymul

    of the current status of metabolic engineering of chemolithoautotrophs is carried out in order to identify the challenges and likely routes to overcome them. This is presented in Chapter 3 of this dissertation. The initial metabolic engineering and bioreactor studies was carried out using a number of gene-constructs on R. capsulatus and R. eutropha. The gene-constructs consisted of Plac promoter followed by the triterpene synthase genes (SS or BS) and other upstream genes. A comparison of the production of triterpenes were done in the different growth modes that R. capsulatus was capable of growing---aerobic heterotrophic, anaerobic photoheterotrophic and aerobic chemoautotrophic. Autotrophic productivity could likely be improved much further by increasing the available mass-transfer of the reactor. These efforts are presented in Chapter 4 of this dissertation. (Abstract shortened by UMI.).

  2. Anaerobic oxidation of toluene, phenol, and p-cresol by the dissimilatory iron-reducing organism, GS-15

    Science.gov (United States)

    Lovley, D.R.; Lonergan, D.J.

    1990-01-01

    The dissimilatory Fe(III) reducer, GS-15, is the first microorganism known to couple the oxidation of aromatic compounds to the reduction of Fe(III) and the first example of a pure culture of any kind known to anaerobically oxidize an aromatic hydrocarbon, toluene. In this study, the metabolism of toluene, phenol, and p-cresol by GS-15 was investigated in more detail. GS-15 grew in an anaerobic medium with toluene as the sole electron donor and Fe(III) oxide as the electron acceptor. Growth coincided with Fe(III) reduction. [ring-14C]toluene was oxidized to 14CO2, and the stoichiometry of 14CO2 production and Fe(III) reduction indicated that GS-15 completely oxidized toluene to carbon dioxide with Fe(III) as the electron acceptor. Magnetite was the primary iron end product during toluene oxidation. Phenol and p-cresol were also completely oxidized to carbon dioxide with Fe(III) as the sole electron acceptor, and GS-15 could obtain energy to support growth by oxidizing either of these compounds as the sole electron donor. p-Hydroxybenzoate was a transitory extracellular intermediate of phenol and p-cresol metabolism but not of toluene metabolism. GS-15 oxidized potential aromatic intermediates in the oxidation of toluene (benzylalcohol and benzaldehyde) and p-cresol (p-hydroxybenzylalcohol and p-hydroxybenzaldehyde). The metabolism described here provides a model for how aromatic hydrocarbons and phenols may be oxidized with the reduction of Fe(III) in contaminated aquifers and petroleum-containing sediments.

  3. Heterotrophic and elemental-sulfur-based autotrophic denitrification processes for simultaneous nitrate and Cr(VI) reduction.

    Science.gov (United States)

    Sahinkaya, Erkan; Kilic, Adem

    2014-03-01

    Nitrate and chromate can be present together in water resources as nitrate is a common co-contaminant in surface and ground waters. This study aims at comparatively evaluating simultaneous chromate and nitrate reduction in heterotrophic and sulfur-based autotrophic denitrifying column bioreactors. In sulfur-based autotrophic denitrification process, elemental sulfur and nitrate act as an electron donor and an acceptor, respectively, without requirement of organic supplementation. Autotrophic denitrification was complete and not adversely affected by chromate up to 0.5 mg/L. Effluent chromate concentration was water treatment due to the elimination of organic supplementation and the risk of treated effluent contamination.

  4. Direct Involvement of ombB, omaB and omcB Genes in Extracellular Reduction of Fe(III by Geobacter sulfurreducens PCA

    Directory of Open Access Journals (Sweden)

    Yimo eLiu

    2015-10-01

    Full Text Available The tandem gene clusters orfR-ombB-omaB-omcB and orfS-ombC-omaC-omcC of the metal-reducing bacterium Geobacter sulfurreducens PCA are responsible for trans-outer membrane electron transfer during extracellular reduction of Fe(III-citrate and ferrihydrite [a poorly crystalline Fe(III oxide]. Each gene cluster encodes a putative transcriptional factor (OrfR/OrfS, a porin-like outer-membrane protein (OmbB/OmbC, a periplasmic c-type cytochrome (c-Cyt, OmaB/OmaC and an outer-membrane c-Cyt (OmcB/OmcC. The individual roles of OmbB, OmaB and OmcB in extracellular reduction of Fe(III, however, have remained either uninvestigated or controversial. Here, we showed that replacements of ombB, omaB, omcB and ombB-omaB with an antibiotic gene in the presence of ombC-omaC-omcC had no impact on reduction of Fe(III-citrate by G. sulfurreducens PCA. Disruption of ombB, omaB, omcB and ombB-omaB in the absence of ombC-omaC-omcC, however, severely impaired the bacterial ability to reduce Fe(III-citrate as well as ferrihydrite. These results unequivocally demonstrate an overlapping role of ombB-omaB-omcB and ombC-omaC-omcC in extracellular Fe(III reduction by G. sulfurreducens PCA. Involvement of both ombB-omaB-omcB and ombC-omaC-omcC in extracellular Fe(III reduction reflects the importance of these trans-outer membrane protein complexes in the physiology of this bacterium. Moreover, the kinetics of Fe(III-citrate and ferrihydrite reduction by these mutants in the absence of ombC-omaC-omcC were nearly identical, which suggests that absence of any protein subunit eliminates function of OmaB/OmbB/OmcB protein complex. Finally, orfS was found to have a negative impact on the extracellular reduction of Fe(III-citrate and ferrihydrite in G. sulfurreducens PCA probably by serving as a transcriptional repressor.

  5. Nitrification and growth of autotrophic nitrifying bacteria and Thaumarchaeota in the coastal North Sea

    Science.gov (United States)

    Veuger, Bart; Pitcher, Angela; Schouten, Stefan; Sinninghe Damsté, Jaap S.; Middelburg, Jack J.

    2013-04-01

    A dual stable isotope (15N and 13C) tracer approach in combination with compound-specific stable isotope analysis of bacterial and Thaumarchaeotal lipid biomarkers was used to investigate nitrification and the associated growth of autotrophic nitrifiers in the Dutch coastal North Sea. This study focusses on the stoichiometry between nitrification and DIC fixation by autotrophic nitrifiers as well as on the contributions of bacteria versus Thaumarchaeota to total autotrophic DIC-fixation by nitrifiers. Water from the dutch coastal North Sea was collected at weekly to biweekly intervals during the winter of 2007-2008. Watersamples were incubated with 15N-labeled ammonium and 15N was traced into nitrate and suspended material to quantify rates of nitrification and ammonium assimilation respectively. Growth of autotrophic nitrifiers was measured by incubating water samples with 13C-DIC in the presence and absence of nitrification inhibitors (nitrapyrin and chlorate) and subsequent analysis of 13C in bacterial phospholipid-derived fatty acids (PLFAs) and the Thaumarchaeotal biomarker crenarchaeol. Results revealed high nitrification rates with nitrification being the primary sink for ammonium. 13C-DIC fixation into bacterial and Thaumarchaeotal lipids was strongly reduced by the nitrification inhibitors (27-95%). The ratio between rates of nitrification versus DIC fixation by nitrifiers was higher or even much higher than typical values for autotrophic nitrifiers, indicating that little DIC was fixed relative to the amount of energy that was generated by nitrification, and hence that other other processes for C acquisition may have been relevant as well. The inhibitor-sensitive 13C-PLFA pool was dominated by the common PLFAs 16:0, 16:1ω7c and 18:1ω7c throughout the whole sampling period and occasionally also included the polyunsaturated fatty acids 18:2ω6c and 18:3ω3. Cell-specific 13C-DIC fixation activity of the nitrifying bacteria was much higher than that of the

  6. Analysis of Microbial Communities in Biofilms from CSTR-Type Hollow Fiber Membrane Biofilm Reactors for Autotrophic Nitrification and Hydrogenotrophic Denitrification.

    Science.gov (United States)

    Shin, Jung-Hun; Kim, Byung-Chun; Choi, Okkyoung; Kim, Hyunook; Sang, Byoung-In

    2015-10-01

    Two hollow fiber membrane biofilm reactors (HF-MBfRs) were operated for autotrophic nitrification and hydrogenotrophic denitrification for over 300 days. Oxygen and hydrogen were supplied through the hollow fiber membrane for nitrification and denitrification, respectively. During the period, the nitrogen was removed with the efficiency of 82-97% for ammonium and 87-97% for nitrate and with the nitrogen removal load of 0.09-0.26 kg NH4(+)-N/m(3)/d and 0.10-0.21 kg NO3(-)-N/m(3)/d, depending on hydraulic retention time variation by the two HF-MBfRs for autotrophic nitrification and hydrogenotrophic denitrification, respectively. Biofilms were collected from diverse topological positions in the reactors, each at different nitrogen loading rates, and the microbial communities were analyzed with partial 16S rRNA gene sequences in denaturing gradient gel electrophoresis (DGGE). Detected DGGE band sequences in the reactors were correlated with nitrification or denitrification. The profile of the DGGE bands depended on the NH4(+) or NO3(-) loading rate, but it was hard to find a major strain affecting the nitrogen removal efficiency. Nitrospira-related phylum was detected in all biofilm samples from the nitrification reactors. Paracoccus sp. and Aquaspirillum sp., which are an autohydrogenotrophic bacterium and an oligotrophic denitrifier, respectively, were observed in the denitrification reactors. The distribution of microbial communities was relatively stable at different nitrogen loading rates, and DGGE analysis based on 16S rRNA (341f /534r) could successfully detect nitrate-oxidizing and hydrogen-oxidizing bacteria but not ammonium-oxidizing bacteria in the HF-MBfRs.

  7. Anaerobic benzene oxidation by Geobacter species.

    Science.gov (United States)

    Zhang, Tian; Bain, Timothy S; Nevin, Kelly P; Barlett, Melissa A; Lovley, Derek R

    2012-12-01

    The abundance of Geobacter species in contaminated aquifers in which benzene is anaerobically degraded has led to the suggestion that some Geobacter species might be capable of anaerobic benzene degradation, but this has never been documented. A strain of Geobacter, designated strain Ben, was isolated from sediments from the Fe(III)-reducing zone of a petroleum-contaminated aquifer in which there was significant capacity for anaerobic benzene oxidation. Strain Ben grew in a medium with benzene as the sole electron donor and Fe(III) oxide as the sole electron acceptor. Furthermore, additional evaluation of Geobacter metallireducens demonstrated that it could also grow in benzene-Fe(III) medium. In both strain Ben and G. metallireducens the stoichiometry of benzene metabolism and Fe(III) reduction was consistent with the oxidation of benzene to carbon dioxide with Fe(III) serving as the sole electron acceptor. With benzene as the electron donor, and Fe(III) oxide (strain Ben) or Fe(III) citrate (G. metallireducens) as the electron acceptor, the cell yields of strain Ben and G. metallireducens were 3.2 × 10(9) and 8.4 × 10(9) cells/mmol of Fe(III) reduced, respectively. Strain Ben also oxidized benzene with anthraquinone-2,6-disulfonate (AQDS) as the sole electron acceptor with cell yields of 5.9 × 10(9) cells/mmol of AQDS reduced. Strain Ben serves as model organism for the study of anaerobic benzene metabolism in petroleum-contaminated aquifers, and G. metallireducens is the first anaerobic benzene-degrading organism that can be genetically manipulated.

  8. Extraction of Fe(III) and U(VI) with 1-phenyl-3-methyl-4-acyl-pyrazolones-5 from aqueous solutions of different acids and complexing agents. Separation of Fe(III) from U(VI)

    Energy Technology Data Exchange (ETDEWEB)

    Okafor, E.C. (Nigeria Univ., Nsukka (Nigeria). Dept. of Pure and Industrial Chemistry); Uzoukwu, B.A. (Port Harcourt Univ. (Nigeria). Dept. of Pure and Industrial Chemistry)

    1990-01-01

    Solvent extraction behaviour of Fe(III) and U(VI) in aqueous media containing various mineral acids or complexing agents, using 4-butyryl, 4-palmitoyl and 4-trichloroacetyl derivatives of 1-phenyl-3-methyl-pyrazolone-5 in xylene as extraction reagents have been studied. The possible extraction mechanism has been investigated. Solid complexes of Fe(III) and U(VI) with the chelating agents have been isolated and analysed. Separation factors of Fe(III) and U(VI) using these chelating agents are reported and methods suggested for separation of Fe(III) from U(VI) in an aqueous medium containing 0.1 M HCl or 5x10{sup -4} M EDTA. (orig.).

  9. Autotrophic carbon sources for fish communities in a tropical coastal ecosystem (Gazi bay, Kenya)

    OpenAIRE

    Nyunja, J; Ntiba, M; Onyari, J.; Mavuti, K.; Soetaert, K.; Bouillon, Steven

    2009-01-01

    Interlinked mangrove-seagrass ecosystems are characteristic features of many tropical coastal areas, where they act as feeding and nursery grounds for a variety of fishes and invertebrates. The autotrophic carbon sources supporting fisheries in Gazi bay (Kenya) were studied in three sites, two located in the tidal creeks flowing through extensive mangrove forests, another site located in the subtidal seagrass meadows, approximately 2.5 km away from the forest. Carbon and nitrogen stable isoto...

  10. Impact of Sulfur Starvation in Autotrophic and Heterotrophic Cultures of the Extremophilic Microalga Galdieria phlegrea (Cyanidiophyceae).

    Science.gov (United States)

    Carfagna, Simona; Bottone, Claudia; Cataletto, Pia Rosa; Petriccione, Milena; Pinto, Gabriele; Salbitani, Giovanna; Vona, Vincenza; Pollio, Antonino; Ciniglia, Claudia

    2016-09-01

    In plants and algae, sulfate assimilation and cysteine synthesis are regulated by sulfur (S) accessibility from the environment. This study reports the effects of S deprivation in autotrophic and heterotrophic cultures of Galdieria phlegrea (Cyanidiophyceae), a unicellular red alga isolated in the Solfatara crater located in Campi Flegrei (Naples, Italy), where H2S is the prevalent form of gaseous S in the fumarolic fluids and S is widespread in the soils near the fumaroles. This is the first report on the effects of S deprivation on a sulfurous microalga that is also able to grow heterotrophically in the dark. The removal of S from the culture medium of illuminated cells caused a decrease in the soluble protein content and a significant decrease in the intracellular levels of glutathione. Cells from heterotrophic cultures of G. phlegrea exhibited high levels of internal proteins and high glutathione content, which did not diminish during S starvation, but rather glutathione significantly increased. The activity of O-acetylserine(thiol)lyase (OASTL), the enzyme synthesizing cysteine, was enhanced under S deprivation in a time-dependent manner in autotrophic but not in heterotrophic cells. Analysis of the transcript abundance of the OASTL gene supports the OASTL activity increase in autotrophic cultures under S deprivation.

  11. First flowering hybrid between autotrophic and mycoheterotrophic plant species: breakthrough in molecular biology of mycoheterotrophy.

    Science.gov (United States)

    Ogura-Tsujita, Yuki; Miyoshi, Kazumitsu; Tsutsumi, Chie; Yukawa, Tomohisa

    2014-03-01

    Among land plants, which generally exhibit autotrophy through photosynthesis, about 880 species are mycoheterotrophs, dependent on mycorrhizal fungi for their carbon supply. Shifts in nutritional mode from autotrophy to mycoheterotrophy are usually accompanied by evolution of various combinations of characters related to structure and physiology, e.g., loss of foliage leaves and roots, reduction in seed size, degradation of plastid genome, and changes in mycorrhizal association and pollination strategy. However, the patterns and processes involved in such alterations are generally unknown. Hybrids between autotrophic and mycoheterotrophic plants may provide a breakthrough in molecular studies on the evolution of mycoheterotrophy. We have produced the first hybrid between autotrophic and mycoheterotrophic plant species using the orchid group Cymbidium. The autotrophic Cymbidium ensifolium subsp. haematodes and mycoheterotrophic C. macrorhizon were artificially pollinated, and aseptic germination of the hybrid seeds obtained was promoted by sonication. In vitro flowering was observed five years after seed sowing. Development of foliage leaves, an important character for photosynthesis, segregated in the first generation; that is, some individuals only developed scale leaves on the rhizome and flowering stems. However, all of the flowering plants formed roots, which is identical to the maternal parent.

  12. A pH-control model for heterotrophic and hydrogen-based autotrophic denitrification.

    Science.gov (United States)

    Tang, Youneng; Zhou, Chen; Ziv-El, Michal; Rittmann, Bruce E

    2011-01-01

    This work presents a model to predict the alkalinity, pH, and Langelier Saturation Index (LSI) in heterotrophic and H(2)-based autotrophic denitrification systems. The model can also be used to estimate the amount of acid, e.g. HCl, added to the influent (method 1) or the pH set point in the reactor (method 2: pH can be maintained stable by CO(2)-sparge using a pH-control loop) to prevent the pH from exceeding the optimal range for denitrification and to prevent precipitation from occurring. The model was tested with two pilot plants carrying out denitrification of groundwater with high hardness: a heterotrophic system using ethanol as the electron donor and an H(2)-based autotrophic system. The measured alkalinity, pH, and LSI were consistent with the model for both systems. This work also quantifies: (1) how the alkalinity and pH in Stage-1 significantly differ from those in Stage-2; (2) how the pH and LSI differ significantly in the two denitrification systems while the alkalinity increase is about the same; and (3) why CO(2) addition is the preferred method for autotrophic system, while HCl addition is the preferred method for the heterotrophic system.

  13. Paenibacillus guangzhouensis sp. nov., an Fe(III)- and humus-reducing bacterium from a forest soil.

    Science.gov (United States)

    Li, Jibing; Lu, Qin; Liu, Ting; Zhou, Shungui; Yang, Guiqin; Zhao, Yong

    2014-11-01

    A Gram-reaction-variable, rod-shaped, motile, facultatively aerobic and endospore-forming bacterium, designated strain GSS02(T), was isolated from a forest soil. Strain GSS02(T) was capable of reducing humic substances and Fe(III) oxides. Strain GSS02(T) grew optimally at 35 °C, at pH 78 and in the presence of 1% NaCl. The predominant menaquinone was MK-7. The major cellular fatty acids were anteiso-C(15:0) and iso-C(16:0) and the polar lipid profile contained mainly phosphatidylethanolamine, diphosphatidylglycerol and phosphatidylglycerol, with moderate amounts of two unknown aminophospholipids and a minor amount of one unknown lipid. The DNA G+C content was 53.4 mol%. Comparative 16S rRNA gene sequence analysis showed that strain GSS02(T) was related most closely to Paenibacillus terrigena JCM 21741(T) (98.1% similarity). Mean DNA-DNA relatedness between strain GSS02(T) and P. terrigena JCM 21741(T) was 58.8 ± 0.5%. The phylogenetic, chemotaxonomic and phenotypic results clearly demonstrated that strain GSS02(T) belongs to the genus Paenibacillus and represents a novel species, for which the name Paenibacillus guangzhouensis sp. nov. is proposed. The type strain is GSS02(T) ( =KCTC 33171(T) =CCTCC AB 2013236(T)).

  14. Photochemical degradation of environmentally persistent perfluorooctanoic acid (PFOA) in the presence of Fe(III)

    Institute of Scientific and Technical Information of China (English)

    Yuan Wang; Peng Yi Zhang; Gang Pan; Hao Chen

    2008-01-01

    Environmentally persistent and bioaccumulative perfluorooctanic acid (PFOA) was difficult to be decomposed under the irradiation of 254 nm UV light. However, in the presence of 80μmol /L Fe(III), 80% of PFOA with initial concentration of 48μmol/L (20 mg/L) was effectively degraded and 47.8% of fluorine atoms in PFOA molecule were transformed into inorganic fluoride ion after 4 h reaction. Shorter chain perfluorocarboxylic acids bearing C3-C7 and fluoride ion were detected and identified by LC/MS and IC as the degradation products in the aqueous solution. It was proposed that complexes of PFOA with Fe(III) initiated degradation of PFOA irradiated with 254 nm UV light.

  15. Shewanella oneidensis MR-1-Induced Fe(III) Reduction Facilitates Roxarsone Transformation

    OpenAIRE

    2016-01-01

    Although microbial activity and associated iron (oxy)hydroxides are known in general to affect the environmental dynamics of 4-hydroxy-3-nitrobenzenearsonic acid (roxarsone), the mechanistic understanding of the underlying biophysico-chemical processes remains unclear due to limited experimental information. We studied how Shewanella oneidensis MR-1 –a widely distributed metal-reducing bacterium, in the presence of dissolved Fe(III), affects roxarsone transformations and biogeochemical cyclin...

  16. Applying the Fe(III) binding property of a chemical transferrin mimetic to Ti(IV) anticancer drug design.

    Science.gov (United States)

    Parks, Timothy B; Cruz, Yahaira M; Tinoco, Arthur D

    2014-02-03

    As an endogenous serum protein binder of Ti(IV), transferrin (Tf) serves as an excellent vehicle to stabilize the hydrolysis prone metal ion and successfully transport it into cells. This transporting role is thought to be central to Ti(IV)'s anticancer function, but efforts to synthesize Ti(IV) compounds targeting transferrin have not produced a drug. Nonetheless, the Ti(IV) transferrin complex (Ti2Tf) greatly informs on a new Ti(IV)-based anticancer drug design strategy. Ti2Tf interferes with cellular uptake of Fe(III), which is particularly detrimental to cancer cells because of their higher requirement for iron. Ti(IV) compounds of chemical transferrin mimetic (cTfm) ligands were designed to facilitate Ti(IV) activity by attenuating Fe(III) intracellular levels. In having a higher affinity for Fe(III) than Ti(IV), these ligands feature the appropriate balance between stability and lability to effectively transport Ti(IV) into cancer cells, release Ti(IV) via displacement by Fe(III), and deplete the intracellular Fe(III) levels. The cTfm ligand N,N'-di(o-hydroxybenzyl)ethylenediamine-N,N'-diacetic acid (HBED) was selected to explore the feasibility of the design strategy. Kinetic studies on the Fe(III) displacement process revealed that Ti(IV) can be transported and released into cells by HBED on a physiologically relevant time scale. Cell viability studies using A549 cancerous and MRC5 normal human lung cells and testing the cytotoxicity of HBED and its Ti(IV), Fe(III), and Ga(III) compounds demonstrate the importance of Fe(III) depletion in the proposed drug design strategy and the specificity of the strategy for Ti(IV) activity. The readily derivatized cTfm ligands demonstrate great promise for improved Ti(IV) anticancer drugs.

  17. Shewanella oneidensis MR-1-Induced Fe(III) Reduction Facilitates Roxarsone Transformation.

    Science.gov (United States)

    Chen, Guowei; Ke, Zhengchen; Liang, Tengfang; Liu, Li; Wang, Gang

    2016-01-01

    Although microbial activity and associated iron (oxy)hydroxides are known in general to affect the environmental dynamics of 4-hydroxy-3-nitrobenzenearsonic acid (roxarsone), the mechanistic understanding of the underlying biophysico-chemical processes remains unclear due to limited experimental information. We studied how Shewanella oneidensis MR-1 -a widely distributed metal-reducing bacterium, in the presence of dissolved Fe(III), affects roxarsone transformations and biogeochemical cycling in a model aqueous system. The results showed that the MR-1 strain was able to anaerobically use roxarsone as a terminal electron acceptor and to convert it to a single product, 3-amino-4-hydroxybenzene arsonic acid (AHBAA). The presence of Fe(III) stimulated roxarsone transformation via MR-1-induced Fe(III) reduction, whereby the resulting Fe(II) acted as an efficient reductant for roxarsone transformation. In addition, the subsequent secondary Fe(III)/Fe(II) mineralization created conditions for adsorption of organoarsenic compounds to the yielded precipitates and thereby led to arsenic immobilization. The study provided direct evidence of Shewanella oneidensis MR-1-induced direct and Fe(II)-associated roxarsone transformation. Quantitative estimations revealed a candidate mechanism for the early-stage environmental dynamics of roxarsone in nature, which is essential for understanding the environmental dynamics of roxarsone and successful risk assessment.

  18. Evidence for the aquatic binding of arsenate by natural organic matter-suspended Fe(III)

    Science.gov (United States)

    Ritter, K.; Aiken, G.R.; Ranville, J.F.; Bauer, M. E.; Macalady, D.L.

    2006-01-01

    Dialysis experiments with arsenate and three different NOM samples amended with Fe(III) showed evidence confirming the formation of aquatic arsenate-Fe(III)-NOM associations. A linear relationship was observed between the amount of complexed arsenate and the Fe(III) content of the NOM. The dialysis results were consistent with complex formation through ferric iron cations acting as bridges between the negatively charged arsenate and NOM functional groups and/or a more colloidal association, in which the arsenate is bound by suspended Fe(III)-NOM colloids. Sequential filtration experiments confirmed that a significant proportion of the iron present at all Fe/C ratios used in the dialysis experiments was colloidal in nature. These colloids may include larger NOM species that are coagulated by the presence of chelated Fe(III) and/or NOM-stabilized ferric (oxy)hydroxide colloids, and thus, the solution-phase arsenate-Fe(III)-NOM associations are at least partially colloidal in nature. ?? 2006 American Chemical Society.

  19. Shewanella oneidensis MR-1-Induced Fe(III) Reduction Facilitates Roxarsone Transformation

    Science.gov (United States)

    Chen, Guowei; Ke, Zhengchen; Liang, Tengfang; Liu, Li; Wang, Gang

    2016-01-01

    Although microbial activity and associated iron (oxy)hydroxides are known in general to affect the environmental dynamics of 4-hydroxy-3-nitrobenzenearsonic acid (roxarsone), the mechanistic understanding of the underlying biophysico-chemical processes remains unclear due to limited experimental information. We studied how Shewanella oneidensis MR-1 –a widely distributed metal-reducing bacterium, in the presence of dissolved Fe(III), affects roxarsone transformations and biogeochemical cycling in a model aqueous system. The results showed that the MR-1 strain was able to anaerobically use roxarsone as a terminal electron acceptor and to convert it to a single product, 3-amino-4-hydroxybenzene arsonic acid (AHBAA). The presence of Fe(III) stimulated roxarsone transformation via MR-1-induced Fe(III) reduction, whereby the resulting Fe(II) acted as an efficient reductant for roxarsone transformation. In addition, the subsequent secondary Fe(III)/Fe(II) mineralization created conditions for adsorption of organoarsenic compounds to the yielded precipitates and thereby led to arsenic immobilization. The study provided direct evidence of Shewanella oneidensis MR-1-induced direct and Fe(II)-associated roxarsone transformation. Quantitative estimations revealed a candidate mechanism for the early-stage environmental dynamics of roxarsone in nature, which is essential for understanding the environmental dynamics of roxarsone and successful risk assessment. PMID:27100323

  20. Studies on Synthetic and Natural Melanin and Its Affinity for Fe(III Ion

    Directory of Open Access Journals (Sweden)

    T. G. Costa

    2012-01-01

    Full Text Available In this work, we measured the metal-binding sites of natural and synthetic dihydroxyindole (DHI melanins and their respective interactions with Fe(III ions. Besides the two acid groups detected for the DHI system: catechol (Cat and quinone-imine (QI, acetate groups were detected in the natural oligomer by potentiometric titrations. At acidic pH values, Fe(III complexation with synthetic melanin was detected in an Fe(OH(CatH2Cat interaction. With an increase of pH, three new interactions occurred: dihydroxide diprotonated catechol, Fe(OH2(CatH2Cat−, dihydroxide monoprotonated catechol, [Fe(OH2(CatHCat]2−, and an interaction resulting from the association of one quinone-imine and a catechol group, [Fe(OH2(Qi−(CatHCat]3−. In the natural melanin system, we detected the same interactions involving catechol and quinone-imine groups but also the metal interacts with acetate group at pH values lower than 4.0. Furthermore, interactions in the synthetic system were also characterized by infrared spectroscopy by using the characteristic vibrations of catechol and quinone-imine groups. Finally, scanning electronic microscopy (SEM and energy-dispersive X-ray (EDS analysis were used to examine the differences in morphology of these two systems in the absence and presence of Fe(III ions. The mole ratio of metal and donor atoms was obtained by the EDS analysis.

  1. Nitrification and growth of autotrophic nitrifying bacteria and Thaumarchaeota in the coastal North Sea

    Directory of Open Access Journals (Sweden)

    B. Veuger

    2012-11-01

    Full Text Available Nitrification and the associated growth of autotrophic nitrifiers, as well as the contributions of bacteria and Thaumarchaeota to total autotrophic C-fixation by nitrifiers were investigated in the Dutch coastal North Sea from October 2007 to March 2008. Rates of nitrification were determined by incubation of water samples with 15N-ammonium and growth of autotrophic nitrifiers was measured by incubation with 13C-DIC in the presence and absence of nitrification inhibitors (nitrapyrin and chlorate in combination with compound-specific stable isotope (13C analysis of bacterial- and Thaumarchaeotal lipid biomarkers. Net nitrification during the sampling period was evident from the concentration dynamics of ammonium, nitrite and nitrate. Measured nitrification rates were high (41–221 nmol N l−1h−1. Ammonium assimilation was always substantially lower than nitrification with nitrification on average contributing 89% (range 73–97% to total ammonium consumption.

    13C-DIC fixation into bacterial and Thaumarchaeotal lipids was strongly reduced by the nitrification inhibitors (27–95%. The inhibitor-sensitive 13C-PLFA pool was dominated by the common PLFAs 16:0, 16:1ω7c and 18:1ω7c throughout the whole sampling period and occasionally also included the polyunsaturated fatty acids 18:2ω6c and 18:3ω3. Cell-specific 13C-DIC fixation activity of the nitrifying bacteria was much higher than that of the nitrifying Thaumarchaeota throughout the whole sampling period, even during the peak in Thaumarchaeotal abundance and activity. This suggests that the contribution of autotrophic Thaumarchaeota to nitrification during winter in the coastal North Sea may have been smaller than expected from their gene abundance. These results emphasize the importance of direct measurements of the actual activity of bacteria and Thaumarchaeota, rather than abundance

  2. Online spectrophotometric determination of Fe(II) and Fe(III) by flow injection combined with low pressure ion chromatography

    Science.gov (United States)

    Chen, Shujuan; Li, Nan; Zhang, Xinshen; Yang, Dongjing; Jiang, Heimei

    2015-03-01

    A simple and new low pressure ion chromatography combined with flow injection spectrophotometric procedure for determining Fe(II) and Fe(III) was established. It is based on the selective adsorption of low pressure ion chromatography column to Fe(II) and Fe(III), the online reduction reaction of Fe(III) and the reaction of Fe(II) in sodium acetate with phenanthroline, resulting in an intense orange complex with a suitable absorption at 515 nm. Various chemical (such as the concentration of colour reagent, eluant and reductive agent) and instrumental parameters (reaction coil length, reductive coil length and wavelength) were studied and were optimized. Under the optimum conditions calibration graph of Fe(II)/Fe(III) was linear in the Fe(II)/Fe(III) range of 0.040-1.0 mg/L. The detection limit of Fe(III) and Fe(II) was respectively 3.09 and 1.55 μg/L, the relative standard deviation (n = 10) of Fe(II) and Fe(III) 1.89% and 1.90% for 0.5 mg/L of Fe(II) and Fe(III) respectively. About 2.5 samples in 1 h can be analyzed. The interfering effects of various chemical species were studied. The method was successfully applied in the determination of water samples.

  3. Model-based evaluation of the role of Anammox on nitric oxide and nitrous oxide productions in membrane aerated biofilm reactor

    DEFF Research Database (Denmark)

    Ni, Bing-Jie; Smets, Barth F.; Yuan, Zhiguo;

    2013-01-01

    A multispecies one-dimensional biofilm model considering nitric oxide (NO) and nitrous oxide (N2O) productions for membrane aerated biofilm reactor (MABR) that remove nitrogen autotrophically through aerobic ammonia oxidation followed by Anammox is used to study the role of Anammox activity on th...

  4. Effects of paraquat on photosynthetic pigments, antioxidant enzymes, and gene expression in Chlorella pyrenoidosa under mixotrophic compared with autotrophic conditions.

    Science.gov (United States)

    Zhang, Weiguo; Liu, Min; Zhang, Peiliang; Yu, Fugen; Lu, Shan; Li, Pengfu; Zhou, Junying

    2014-11-01

    Only limited information is available on herbicide toxicity to algae under mixotrophic conditions. In the present study, we studied the effects of the herbicide paraquat on growth, photosynthetic pigments, antioxidant enzymes, and gene expression in Chlorella pyrenoidosa under mixotrophic compared with autotrophic conditions. The mean measured exposure concentrations of paraquat under mixotrophic and autotrophic conditions were in the range of 0.3-3.4 and 0.6-3.6 μM, respectively. Exposure to paraquat for 72 h under both autotrophic and mixotrophic conditions induced decreased growth and chlorophyll (Chl) content, increased superoxide dismutase and peroxidase activities, and decreased transcript abundances of three photosynthesis-related genes (light-independent protochlorophyllide reductase subunit, photosystem II protein D1, and ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [rbcL]). Compared with autotrophic conditions, the inhibition percentage of growth rate under mixotrophic conditions was lower at 0.8 μM paraquat, whereas it was greater at 1.8 and 3.4 μM paraquat. With exposure to 0.8-3.4 μM paraquat, the inhibition rates of Chl a and b content under mixotrophic conditions (43.1-52.4% and 54.6-59.7%, respectively) were greater compared with autotrophic conditions, whereas the inhibition rate of rbcL gene transcription under mixotrophic conditions (35.7-44.0%) was lower. These data showed that similar to autotrophic conditions, paraquat affected the activities of antioxidant enzymes and decreased Chl synthesis and transcription of photosynthesis-related genes in C. pyrenoidosa under mixotrophic conditions, but a differential susceptibility to paraquat toxicity occurred between autotrophically versus mixotrophically grown cells.

  5. Bacteria attenuation by iron electrocoagulation governed by interactions between bacterial phosphate groups and Fe(III) precipitates.

    Science.gov (United States)

    Delaire, Caroline; van Genuchten, Case M; Amrose, Susan E; Gadgil, Ashok J

    2016-10-15

    Iron electrocoagulation (Fe-EC) is a low-cost process in which Fe(II) generated from an Fe(0) anode reacts with dissolved O2 to form (1) Fe(III) precipitates with an affinity for bacterial cell walls and (2) bactericidal reactive oxidants. Previous work suggests that Fe-EC is a promising treatment option for groundwater containing arsenic and bacterial contamination. However, the mechanisms of bacteria attenuation and the impact of major groundwater ions are not well understood. In this work, using the model indicator Escherichia coli (E. coli), we show that physical removal via enmeshment in EC precipitate flocs is the primary process of bacteria attenuation in the presence of HCO3(-), which significantly inhibits inactivation, possibly due to a reduction in the lifetime of reactive oxidants. We demonstrate that the adhesion of EC precipitates to cell walls, which results in bacteria encapsulation in flocs, is driven primarily by interactions between EC precipitates and phosphate functional groups on bacteria surfaces. In single solute electrolytes, both P (0.4 mM) and Ca/Mg (1-13 mM) inhibited the adhesion of EC precipitates to bacterial cell walls, whereas Si (0.4 mM) and ionic strength (2-200 mM) did not impact E. coli attenuation. Interestingly, P (0.4 mM) did not affect E. coli attenuation in electrolytes containing Ca/Mg, consistent with bivalent cation bridging between bacterial phosphate groups and inorganic P sorbed to EC precipitates. Finally, we found that EC precipitate adhesion is largely independent of cell wall composition, consistent with comparable densities of phosphate functional groups on Gram-positive and Gram-negative cells. Our results are critical to predict the performance of Fe-EC to eliminate bacterial contaminants from waters with diverse chemical compositions.

  6. Effect of metal chelators on the oxidative stability of model wine.

    Science.gov (United States)

    Kreitman, Gal Y; Cantu, Annegret; Waterhouse, Andrew L; Elias, Ryan J

    2013-10-02

    Oxidation is a major problem with respect to wine quality, and winemakers have few tools at their disposal to control it. In this study, the effect of exogenous Fe(II) (bipyridine; Ferrozine) and Fe(III) chelators (ethylenediaminetetraacetic acid, EDTA; phytic acid) on nonenzymatic wine oxidation was examined. The ability of these chelators to affect the formation of 1-hydroxyethyl radicals (1-HER) and acetaldehyde was measured using a spin trapping technique with electron paramagnetic resonance (EPR) and by HPLC-PDA, respectively. The chelators were then investigated for their ability to prevent the oxidative loss of an important aroma-active thiol, 3-mercaptohexan-1-ol (3MH). The Fe(II)-specific chelators were more effective than the Fe(III) chelators with respect to 1-HER inhibition during the early stages of oxidation and significantly reduced oxidation markers compared to a control during the study. However, although the addition of Fe(III) chelators was less effective or even showed an initial pro-oxidant activity, the Fe(III) chelators proved to be more effective antioxidants compared to Fe(II) chelators after 8 days of accelerated oxidation. In addition, it is shown for the first time that Fe(II) and Fe(III) chelators can significantly inhibit the oxidative loss of 3MH in model wine.

  7. Biogeochemistry of pyrite and iron sulfide oxidation in marine sediments

    DEFF Research Database (Denmark)

    Schippers, A.; Jørgensen, BB

    2002-01-01

    Pyrite (FeS2) and iron monosulfide (FeS) play a central role in the sulfur and iron cycles of marine sediments, They may be buried in the sediment or oxidized by O-2 after transport by bioturbation to the sediment surface. FeS2 and FeS may also be oxidized within the anoxic sediment in which NO3......-, Fe(III) oxides, or MnO2 are available as potential electron acceptors. In chemical experiments, FeS2 and FeS were oxidized by MnO2 but not with NO3- or amorphous Fe(III) oxide (Schippers and Jørgensen, 2001). Here we also show that in experiments with anoxic sediment slurries, a dissolution of tracer......-marked (FeS2)-Fe-55 occurred with MnO2 but not with NO3- or amorphous Fe(III) oxide as electron acceptor. To study a thermodynamically possible anaerobic microbial FeS, and FeS oxidation with NO3- or amorphous Fe(III) oxide as electron acceptor, more than 300 assays were inoculated with material from several...

  8. Adaptation of the autotrophic acetogen Sporomusa ovata to methanol accelerates the conversion of CO2 to organic products

    DEFF Research Database (Denmark)

    Tremblay, Pier-Luc; Höglund, Daniel; Koza, Anna

    2015-01-01

    Acetogens are efficient microbial catalysts for bioprocesses converting C1 compounds into organic products. Here, an adaptive laboratory evolution approach was implemented to adapt Sporomusa ovata for faster autotrophic metabolism and CO2 conversion to organic chemicals. S. ovata was first adapte...... demonstrate that an efficient strategy to increase rates of CO2 conversion in bioprocesses like microbial electrosynthesis is to evolve the microbial catalyst by adaptive laboratory evolution to optimize its autotrophic metabolism.......Acetogens are efficient microbial catalysts for bioprocesses converting C1 compounds into organic products. Here, an adaptive laboratory evolution approach was implemented to adapt Sporomusa ovata for faster autotrophic metabolism and CO2 conversion to organic chemicals. S. ovata was first adapted...... to grow quicker autotrophically with methanol, a toxic C1 compound, as the sole substrate. Better growth on different concentrations of methanol and with H2-CO2 indicated the adapted strain had a more efficient autotrophic metabolism and a higher tolerance to solvent. The growth rate on methanol...

  9. Effects of hydrogen partial pressure on autotrophic growth and product formation of Acetobacterium woodii.

    Science.gov (United States)

    Kantzow, Christina; Weuster-Botz, Dirk

    2016-08-01

    Low aqueous solubility of the gases for autotrophic fermentations (e.g., hydrogen gas) results in low productivities in bioreactors. A frequently suggested approach to overcome mass transfer limitation is to increase the solubility of the limiting gas in the reaction medium by increasing the partial pressure in the gas phase. An increased inlet hydrogen partial pressure of up to 2.1 bar (total pressure of 3.5 bar) was applied for the autotrophic conversion of hydrogen and carbon dioxide with Acetobacterium woodii in a batch-operated stirred-tank bioreactor with continuous gas supply. Compared to the autotrophic batch process with an inlet hydrogen partial pressure of 0.4 bar (total pressure of 1.0 bar) the final acetate concentration after 3.1 days was reduced to 50 % (29.2 g L(-1) compared to 59.3 g L(-1)), but the final formate concentration was increased by a factor of 18 (7.3 g L(-1) compared to 0.4 g L(-1)). Applying recombinant A. woodii strains overexpressing either genes for enzymes in the methyl branch of the Wood-Ljungdahl pathway or the genes phosphotransacetylase and acetate kinase at an inlet hydrogen partial pressure of 1.4 bar reduced the final formate concentration by up to 40 % and increased the final dry cell mass and acetate concentrations compared to the wild type strain. Solely the overexpression of the two genes for ATP regeneration at the end of the Wood-Ljungdahl pathway resulted in an initial switch off of formate production at increased hydrogen partial pressure until the maximum of the hydrogen uptake rate was reached.

  10. Enhanced start-up of anaerobic facultatively autotrophic biocathodes in bioelectrochemical systems.

    Science.gov (United States)

    Zaybak, Zehra; Pisciotta, John M; Tokash, Justin C; Logan, Bruce E

    2013-12-01

    Biocathodes in bioelectrochemical systems (BESs) can be used to convert CO2 into diverse organic compounds through a process called microbial electrosynthesis. Unfortunately, start-up of anaerobic biocathodes in BESs is a difficult and time consuming process. Here, a pre-enrichment method was developed to improve start-up of anaerobic facultatively autotrophic biocathodes capable of using cathodes as the electron donor (electrotrophs) and CO2 as the electron acceptor. Anaerobic enrichment of bacteria from freshwater bog sediment samples was first performed in batch cultures fed with glucose and then used to inoculate BES cathode chambers set at -0.4V (versus a standard hydrogen electrode; SHE). After two weeks of heterotrophic operation of BESs, CO2 was provided as the sole electron acceptor and carbon source. Consumption of electrons from cathodes increased gradually and was sustained for about two months in concert with a significant decrease in cathode chamber headspace CO2. The maximum current density consumed was -34 ± 4 mA/m(2). Biosynthesis resulted in organic compounds that included butanol, ethanol, acetate, propionate, butyrate, and hydrogen gas. Bacterial community analyses based on 16S rRNA gene clone libraries revealed Trichococcus palustris DSM 9172 (99% sequence identity) as the prevailing species in biocathode communities, followed by Oscillibacter sp. and Clostridium sp. Isolates from autotrophic cultivation were most closely related to Clostridium propionicum (99% sequence identity; ZZ16), Clostridium celerecrescens (98-99%; ZZ22, ZZ23), Desulfotomaculum sp. (97%; ZZ21), and Tissierella sp. (98%; ZZ25). This pre-enrichment procedure enables simplified start-up of anaerobic biocathodes for applications such as electrofuel production by facultatively autotrophic electrotrophs.

  11. An evaluation of autotrophic microbes for the removal of carbon dioxide from combustion gas streams

    Energy Technology Data Exchange (ETDEWEB)

    Apel, W.A.; Walton, M.R.; Dugan, P.R. (EG G Idaho, Inc., Idaho Falls, ID (United States). Center for Biological Processing Technology)

    1994-11-01

    Carbon dioxide is a greenhouse gas that is believed to be a major contributor to global warming. Studies have shown that significant amounts of CO[sub 2] are released into the atmosphere as a result of fossil fuels combustion. Therefore, considerable interest exists in effective and economical technologies for the removal of CO[sub 2] from fossil fuel combustion gas streams. This work evaluated the use of autotrophic microbes for the removal of CO[sub 2] from coal fired power plant combustion gas streams. The CO[sub 2] removal rates of the following autotrophic microbes were determined: [ital Chlorella pyrenoidosa], [ital Euglena gracilis], [ital Thiobacillus ferrooxidans], [ital Aphanocapsa delicatissima], [ital Isochrysis galbana], [ital Phaodactylum tricornutum], [ital Navicula tripunctata schizonemoids], [ital Gomphonema parvulum], [ital Surirella ovata ovata], and four algal consortia. Of those tested, [ital Chlorella pyrenoidosa] exhibited the highest removal rate with 2.6 g CO[sub 2] per day per g dry weight of biomass being removed under optimized conditions. Extrapolation of these data indicated that to remove CO[sub 2] from the combustion gases of a coal fired power plant burning 2.4 x 10[sup 4] metric tons of coal per day would require a bioreactor 386 km[sup 2] x 1m deep and would result in the production of 2.13 x 10[sup 5] metric tons (wet weight) of biomass per day. Based on these calculations, it was concluded that autotrophic CO[sub 2] removal would not be feasible at most locations, and as a result, alternate technologies for CO[sub 2] removal should be explored. 14 refs., 7 figs., 2 tabs.

  12. Enhanced start-up of anaerobic facultatively autotrophic biocathodes in bioelectrochemical systems

    KAUST Repository

    Zaybak, Zehra

    2013-12-01

    Biocathodes in bioelectrochemical systems (BESs) can be used to convert CO2 into diverse organic compounds through a process called microbial electrosynthesis. Unfortunately, start-up of anaerobic biocathodes in BESs is a difficult and time consuming process. Here, a pre-enrichment method was developed to improve start-up of anaerobic facultatively autotrophic biocathodes capable of using cathodes as the electron donor (electrotrophs) and CO2 as the electron acceptor. Anaerobic enrichment of bacteria from freshwater bog sediment samples was first performed in batch cultures fed with glucose and then used to inoculate BES cathode chambers set at -0.4V (versus a standard hydrogen electrode; SHE). After two weeks of heterotrophic operation of BESs, CO2 was provided as the sole electron acceptor and carbon source. Consumption of electrons from cathodes increased gradually and was sustained for about two months in concert with a significant decrease in cathode chamber headspace CO2. The maximum current density consumed was -34±4mA/m2. Biosynthesis resulted in organic compounds that included butanol, ethanol, acetate, propionate, butyrate, and hydrogen gas. Bacterial community analyses based on 16S rRNA gene clone libraries revealed Trichococcus palustris DSM 9172 (99% sequence identity) as the prevailing species in biocathode communities, followed by Oscillibacter sp. and Clostridium sp. Isolates from autotrophic cultivation were most closely related to Clostridium propionicum (99% sequence identity; ZZ16), Clostridium celerecrescens (98-99%; ZZ22, ZZ23), Desulfotomaculum sp. (97%; ZZ21), and Tissierella sp. (98%; ZZ25). This pre-enrichment procedure enables simplified start-up of anaerobic biocathodes for applications such as electrofuel production by facultatively autotrophic electrotrophs. © 2013 Elsevier B.V.

  13. Control of SHARON reactor for autotrophic nitrogen removal in two-reactor configuration

    DEFF Research Database (Denmark)

    Valverde Perez, Borja; Mauricio Iglesias, Miguel; Sin, Gürkan

    2012-01-01

    With the perspective of investigating a suitable control design for autotrophic nitrogen removal, this work explores the control design for a SHARON reactor. With this aim, a full model is developed, including the pH dependency, in order to simulate the reactor and determine the optimal operating...... conditions. Then, the screening of controlled variables and pairing is carried out by an assessment of the effect of the disturbances based on the closed loop disturbance gain plots. Two controlled structures are obtained and benchmarked by their capacity to reject the disturbances before the Anammox reactor....

  14. Incremental design of control system of SHARON-Anammox process for autotrophic nitrogen removal

    DEFF Research Database (Denmark)

    Mauricio Iglesias, Miguel; Valverde Perez, Borja; Sin, Gürkan

    2012-01-01

    With the perspective of investigating a suitable control design for autotrophic nitrogen removal, this work explores the control design for a SHARON-Anammox reactor sequence. With this aim, a full model is developed, including the pH dependency, in order to simulate the reactor and determine...... the optimal operating conditions. Then, the screening of controlled variables and pairing is carried out by an assessment of the effect of the disturbances based on the closed loop disturbance gain plots. Three control structures are obtained and benchmarked by their capacity to reject the disturbances before...... the Anammox reactor....

  15. The effect of hydroxylamine on the activity and aggregate structure of autotrophic nitrifying bioreactor cultures

    DEFF Research Database (Denmark)

    Harper, W.F.; Terada, Akihiko; Poly, F.;

    2009-01-01

    Addition of hydroxylamine (NH2OH) to autotrophic biomass in nitrifying bioreactors affected the activity, physical structure, and microbial ecology of nitrifying aggregates. When NH2OH is added to nitrifying cultures in 6-h batch experiments, the initial NH3-N uptake rates were physiologically...... accelerated by a factor of 1.4-13. NH2OH addition caused a 20-40% decrease in the median aggregate size, broadened the shape of the aggregate size distribution by up to 230%, and caused some of the microcolonies to appear slightly more dispersed. Longer term NH2OH addition in fed batch bioreactors decreased...

  16. Performance of an autotrophic nitrogen removing reactor: Diagnosis through fuzzy logic

    DEFF Research Database (Denmark)

    Vangsgaard, Anna Katrine; Mauricio Iglesias, Miguel; Mutlu, Ayten Gizem;

    Autotrophic nitrogen removal through nitritation-anammox in one stage SBRs is an energy and cost efficient alternative to conventional treatment methods. Intensification of an already complex biological system challenges our ability to observe, understand, diagnose, and control the system. A fuzzy...... logic diagnosis tool was developed, utilizing stoichiometric and concentration ratio measurements and removal efficiencies, along with rules derived from process knowledge. The tool could accurately determine the overall performance of the system and can therefore serve as a powerful tool to provide...

  17. Modeling how soluble microbial products (SMP) support heterotrophic bacteria in autotroph-based biofilms

    DEFF Research Database (Denmark)

    Merkey, Brian; Rittmann, Bruce E.; Chopp, David L.

    2009-01-01

    . In this paper, we develop and use a mathematical model to describe a model biofilm system that includes autotrophic and heterotrophic bacteria and the key products produced by the bacteria. The model combines the methods of earlier multi-species models with a multi-component biofilm model in order to explore......Multi-species biofilm modeling has been used for many years to understand the interactions between species in different biofilm systems, but the complex symbiotic relationship between species is sometimes overlooked, because models do not always include all relevant species and components...

  18. Comparison of mixotrophic to cyclic autotrophic/heterotrophic growth strategies to optimize productivity of Chlorella sorokiniana

    DEFF Research Database (Denmark)

    van Wagenen, Jonathan Myerson; De Francisci, Davide; Angelidaki, Irini

    2015-01-01

    In addition to providing cheap or free mineral nutrients, wastewaters may contain organic carbon compounds that could increase productivity of algal cultures. This study defined a strategy for the addition of organic carbon to photobioreactors in order to improve their productivity compared...... to autotrophic growth. Chlorella sorokiniana was cultivated in medium supplemented with sodium acetate in concentrations equivalent to the volatile fatty acid concentration found in anaerobic digester effluent. Flat-panel photobioreactors were operated using 16:8 light:dark cycles, with different strategies...... in an increased efficiency of the photobioreactor....

  19. A novel control strategy for single-stage autotrophic nitrogen removal in SBR

    DEFF Research Database (Denmark)

    Mauricio Iglesias, Miguel; Vangsgaard, Anna Katrine; Gernaey, Krist

    2015-01-01

    A novel feedforward–feedback control strategy was developed for complete autotrophic nitrogen removal in a sequencing batch reactor. The aim of the control system was to carry out the regulation of the process while keeping the system close to the optimal operation. The controller was designed......), the controller resulted in a significant performance improvement: removal efficiency was kept at a stable high level in the presence of influent ammonium concentration disturbances, and the absolute deviation on removal efficiency was reduced by 40%. The successful validation of the controller in a lab......-scale reactor is a promising result, which brings this control strategy one step closer to full-scale implementation....

  20. Desulfovibrio frigidus sp. nov. and Desulfovibrio ferrireducens sp. nov., psychrotolerant bacteria isolated from Arctic fjord sediments (Svalbard) with the ability to reduce Fe(III)

    DEFF Research Database (Denmark)

    Vandieken, Verona; Knoblauch, Christian; Jørgensen, Bo Barker

    2006-01-01

    fermentation products such as hydrogen, formate and lactate with sulfate as the electron acceptor. Sulfate could be replaced by sulfite, thiosulfate or elemental sulfur. Poorly crystalline and soluble Fe(III) compounds were reduced in sulfate-free medium, but no growth occurred under these conditions......Strains 18T, 61T and 77 were isolated from two permanently cold fjord sediments on the west coast of Svalbard. The three psychrotolerant strains, with temperature optima at 20-23 degrees C, were able to grow at the freezing point of sea water, -2 degrees C. The strains oxidized important...

  1. Anaerobic, Nitrate-Dependent Oxidation of U(IV) Oxide Minerals by the Chemolithoautotrophic Bacterium Thiobacillus denitrificans

    Energy Technology Data Exchange (ETDEWEB)

    Beller, H R

    2004-06-25

    Under anaerobic conditions and at circumneutral pH, cells of the widely-distributed, obligate chemolithoautotrophic bacterium Thiobacillus denitrificans oxidatively dissolved synthetic and biogenic U(IV) oxides (uraninite) in nitrate-dependent fashion: U(IV) oxidation required the presence of nitrate and was strongly correlated to nitrate consumption. This is the first report of anaerobic U(IV) oxidation by an autotrophic bacterium.

  2. Bioavailability of Fe(III) in Natural Soils and the Impact on Mobility of Inorganic Contaminants (Final Report)

    Energy Technology Data Exchange (ETDEWEB)

    Kosson, David S. [Vanderbilt Univ., Nashville, TN (United States). Dept. of Civil and Environmental Engineering; Cowan, Robert M. [Rutgers Univ., New Brunswick, NJ (United States). Dept. of Environmental Science; Young, Lily Y. [Rutgers Univ., New Brunswick, NJ (United States). Center for Agriculture and the Environment; Hatcherl, Eric L. [Vanderbilt Univ., Nashville, TN (United States). Dept. of Civil and Environmental Engineering; Scala, David J. [Vanderbilt Univ., Nashville, TN (United States). Dept. of Civil and Environmental Engineering

    2005-08-02

    Inorganic contaminants, such as heavy metals and radionuclides, can adhere to insoluble Fe(III) minerals resulting in decreased mobility of these contaminants through subsurface environments. Dissimilatory Fe(III)-reducing bacteria (DIRB), by reducing insoluble Fe(III) to soluble Fe(II), may enhance contaminant mobility. The Savannah River Site, South Carolina (SRS), has been subjected to both heavy metal and radionuclide contamination. The overall objective of this project is to investigate the release of inorganic contaminants such as heavy metals and radionuclides that are bound to solid phase soil Fe complexes and to elucidate the mechanisms for mobilization of these contaminants that can be associated with microbial Fe(III) reduction. This is being accomplished by (i) using uncontaminated and contaminated soils from SRS as prototype systems, (ii) evaluating the diversity of DIRBs within the samples and isolating cultures for further study, (iii) using batch microcosms to evaluate the bioavailability of Fe(III) from pure minerals and SRS soils, (iv) developing kinetic and mass transfer models that reflect the system dynamics, and (v) carrying out soil column studies to elucidate the dynamics and interactions amongst Fe(III) reduction, remineralization and contaminant mobility.

  3. The interaction of phenolic acids with Fe(III) in the presence of citrate as studied by isothermal titration calorimetry.

    Science.gov (United States)

    Yang, Senpei; Bai, Guangling; Chen, Lingli; Shen, Qun; Diao, Xianmin; Zhao, Guanghua

    2014-08-15

    Under physiological conditions, exogenous chelators such as polyphenols might interact with non-protein bound ferric complexes, such as Fe(III)-citrate. Additionally, Fe(III) and citrate are widely distributed in various fruits and vegetables which are also rich in phenolic acids. In this study, we focus on the interaction between phenolic acids (gallic acid, methyl gallate and protocatechuic acid) and Fe(III) in the presence of excessive citrate by isothermal titration calorimetry (ITC) for thermodynamic studies, and stopped-flow absorption spectrometry for fast kinetic studies. Results reveal that all of these three phenolic acids can bind to the Fe(III) with the same stoichiometry (3:1). Moreover, the binding constants of these three compounds with Fe(III) are greatly dependent on ligand structure, and are much higher than that of Fe(III)-citrate. Based on their stoichiometry and superhigh binding constants, it is most likely that these three phenolic acids can displace the citrate to bind with one iron(III) ion to form a stable octahedral geometric structure, albeit at different rates. These findings shed light on the interaction between phenolic acids and Fe(III) in the presence of citrate under either physiological conditions or in a food system.

  4. Ammonium Oxidation Under Iron Reducing Conditions: Environmental Factors Characterization and Process Optimization

    Science.gov (United States)

    Huang, Shan; Ruiz, Melany; Jaffe, Peter

    2015-04-01

    Ammonium (NH4+) oxidation coupled to iron (Fe) reduction in the absence of oxygen and nitrate/nitrite (NO3-/NO2-) has been reported by several investigators and is referred to as Feammox. Feammox is a biological reaction, where Fe(III) is the electron acceptor, which is reduced to Fe(II), and NH4+ is the electron donor, which is oxidized to NO2-. An Acidimicrobiaceae bacterium named A6, a previously unreported species in the Acidimicrobiaceae family, has been identified as being responsible for the Feammox process(1, 2) Feammox process was noted in riparian wetland soils in New Jersey(1,3), in tropical rainforest soils in Puerto Rico (4) and in paddy soils in China (5). In addition to these published locations, Feammox process was also found in samples collected from a series of local wetland-, upland-, as well as storm-water detention pond-sediments in New Jersey, river sediments from South Carolina, and forested soils near an acid mine drainage (Dabaoshan, Guangdong province) in China. Using primers acm342f - 439r (2), Acidimicrobiaceae bacterium A6 was detected in samples where Feammox was observed, after strictly anaerobic incubations. According to a canonical correspondence analysis with environmental characteristics and soil microbial communities, the species-environment relationship indicated that pH and Fe oxides content were the primary factors controlling Feammox process. Anaerobic incubations of Feammox enrichment cultures adjusted to different pH, revealed that the optimal pH for Feammox is 4 ~ 5, and the reaction does not proceed when pH > 7. No correlation was found between the distributions of Feammox bacteria and other NH4+ oxidation bacteria. Pure Acidimicrobiaceae bacterium A6 strain was isolated in an autotrophic medium, from an active Feammox membrane reactor (A6 was enriched to 65.8% of the total bacteria). A 13C labeled CO2 amendment was conducted, and the 13C in cells of A6 increased from 1.80% to 10.3% after 14 days incubation. In a separate

  5. Microbial community and population dynamics of single-stage autotrophic nitrogen removal for dilute wastewater at the benchmark oxygen rate supply.

    Science.gov (United States)

    Huang, Yu-Tzu; Chen, Shiou-Shiou; Lee, Po-Heng; Bae, Jaeho

    2013-11-01

    Microbial communities and their kinetic performance in a single-stage autotrophic nitrogen-removal filter at an optimal oxygen supply were examined to determine the presence and activity of denitrifiers, anaerobic ammonia-oxidizing (anammox), ammonia-oxidizing, and nitrite-oxidizing bacteria. To this end, different molecular biology techniques such as real-time quantitative polymerase chain reaction (qPCR) and biomarkers such as 16S rRNA revealed a diverse microbial community along the filter. It was important to survey the specific species of anammox bacteria using a newly designed Candidatus Brocadiafulgida (BF) specific primer, as well as Candidatus Brocadia anammoxidans (BA) and Candidatus Kuenenia stuttgartiensis (KS) specific primers. An unexpected finding was that the predominant anammox species switched from KS in concentrated wastewater to BA in dilute wastewaters. The Eckenfelder model of the NH3-N transformation along the filter was Se=S0 exp(-0.192D/L(2.3217)). These results provide a foundational understanding of the microbial structure and reaction kinetics in such systems.

  6. Bio-electrochemical synthesis of commodity chemicals by autotrophic acetogens utilizing CO2 for environmental remediation.

    Science.gov (United States)

    Jabeen, Gugan; Farooq, Robina

    2016-09-01

    Bio-electrochemical synthesis (BES) is a technique in which electro-autotrophic bacteria such as Clostridium ljungdahlii utilize electric currents as an electron source from the cathode to reduce CO2 to extracellular, multicarbon, exquisite products through autotrophic conversion. The BES of volatile fatty acids and alcohols directly from CO2 is a sustainable alternative for non-renewable, petroleum-based polymer production. This conversion of CO2 implies reduction of greenhouse gas emissions. The synthesis of heptanoic acid, heptanol, hexanoic acid and hexanol, for the first time, by Clostridium ljungdahlii was a remarkable achievement of BES. In our study, these microorganisms were cultivated on the cathode of a bio-electrochemical cell at -400 mV by a DC power supply at 37 degree Centrigrade, pH 6.8, and was studied for both batch and continuous systems. Pre-enrichment of bio-cathode enhanced the electroactivity of cells and resulted in maximizing extracellular products in less time. The main aim of the research was to investigate the impact of low-cost substrate CO2, and the longer cathode recovery range was due to bacterial reduction of CO2 to multicarbon chemical commodities with electrons driven from the cathode. Reactor design was simplified for cost-effectiveness and to enhance energy efficiencies. The Columbic recovery of ethanoic acid, ethanol, ethyl butyrate, hexanoic acid, heptanoic acid and hexanol being in excess of 80 percent proved that BES was a remarkable technology.

  7. Perchlorate reduction by hydrogen autotrophic bacteria and microbial community analysis using high-throughput sequencing.

    Science.gov (United States)

    Wan, Dongjin; Liu, Yongde; Niu, Zhenhua; Xiao, Shuhu; Li, Daorong

    2016-02-01

    Hydrogen autotrophic reduction of perchlorate have advantages of high removal efficiency and harmless to drinking water. But so far the reported information about the microbial community structure was comparatively limited, changes in the biodiversity and the dominant bacteria during acclimation process required detailed study. In this study, perchlorate-reducing hydrogen autotrophic bacteria were acclimated by hydrogen aeration from activated sludge. For the first time, high-throughput sequencing was applied to analyze changes in biodiversity and the dominant bacteria during acclimation process. The Michaelis-Menten model described the perchlorate reduction kinetics well. Model parameters q(max) and K(s) were 2.521-3.245 (mg ClO4(-)/gVSS h) and 5.44-8.23 (mg/l), respectively. Microbial perchlorate reduction occurred across at pH range 5.0-11.0; removal was highest at pH 9.0. The enriched mixed bacteria could use perchlorate, nitrate and sulfate as electron accepter, and the sequence of preference was: NO3(-) > ClO4(-) > SO4(2-). Compared to the feed culture, biodiversity decreased greatly during acclimation process, the microbial community structure gradually stabilized after 9 acclimation cycles. The Thauera genus related to Rhodocyclales was the dominated perchlorate reducing bacteria (PRB) in the mixed culture.

  8. Sulfur-based autotrophic denitrification with eggshell for nitrate-contaminated synthetic groundwater treatment.

    Science.gov (United States)

    Xu, Yaxian; Chen, Nan; Feng, Chuanping; Hao, Chunbo; Peng, Tong

    2016-12-01

    Eggshell is considered to be a waste and a significant quantity of eggshell waste is generated from food processing, baking and hatching industries. In this study, the effect of different sulfur/eggshell (w/w) ratios and temperatures was investigated to evaluate the feasibility of the sulfur-based autotrophic denitrification with eggshell (SADE) process for nitrate removal. The results showed eggshell can maintain a neutral condition in a range of pH 7.05-7.74 in the SADE process, and remove 97% of nitrate in synthetic groundwater. Compared with oyster shell and limestone, eggshell was found to be a desirable alkaline material for sulfur-based autotrophic denitrification (SAD) with no nitrite accumulation and insignificant sulfate production. Denitrification reaction was found to follow the first-order kinetic models (R(2) > .9) having nitrate removal rate constants of 0.85 and 0.93 d(-1) for raw eggshell and boiled eggshell, respectively. Sulfur/eggshell ratio of 2:3 provided the best efficiency on nitrate removal. Nitrate was removed completely by the SADE process at a low temperature of 15°C. Eggshell could be used for the SAD process due to its good effect for nitrate removal from groundwater.

  9. Autotrophic denitrification for nitrate and nitrite removal using sulfur-limestone

    Institute of Scientific and Technical Information of China (English)

    Weili Zhou; Yeiue Sun; Bingtao Wu; Yue Zhang; Min Huang; Toshiaki Miyanaga; Zhenjia Zhang

    2011-01-01

    Sulfur-limestone was used in the autotrophic denitrification process to remove the nitrate and nitrite in a lab scale upflow biofilter.Synthetic water with four levels of nitrate and nitrite concentrations of 10,40,70 and 100 mg N/L was tested.When treating the low concentration of nitrate- or nitrite-contaminated water (10,40 mg N/L),a high removal rate of about 90% was achieved at the hydraulic retention time (HRT) of 3 hr and temperature of 20-25℃.At the same HRT,50% of the nitrate or nitrite could be removed even at the low temperature of 5-10℃.For the higher concentration nitrate and nitrite (70,100 mg N/L),longer HRT was required.The batch test indicated that influent concentration,HRT and temperature are important factors affecting the denitrification efficiency.Molecular analysis implied that nitrate and nitrite were denitrified into nitrogen by the same microorganisms.The sequential two-stepreactions from nitrate to nitrite and from nitrite to the next-step product might have taken place in the same cell during the autotrophic denitrification process.

  10. Autotrophic cultivation of Botryococcus braunii for the production of hydrocarbons and exopolysaccharides in various media

    Energy Technology Data Exchange (ETDEWEB)

    Dayananda, C.; Sarada, R.; Ravishankar, G.A. [Plant Cell Biotechnology Department, Central Food Technological Research Institute, Mysore 570 020 (India); Usha Rani, M.; Shamala, T.R. [Food Microbiology Department, Central Food Technological Research Institute, Mysore 570 020 (India)

    2007-01-15

    Growth of Botryococcus braunii was studied using different autotrophic media such as bold basal medium (BBM), and bold basal with ammonium carbonate (BBMa), BG11, modified Chu 13 medium. Among the different autotrophic media used, BG11 was found to be the best medium for biomass and hydrocarbon production, although B. braunii showed appreciable level of growth and biomass production in all the tested media. The culture maintained at 16:8h light and dark cycle with 1.2+/-0.2klux light intensity at 25+/-1{sup o}C temperature was found to be the best for growth (2.0 and 2.8gL{sup -1} of biomass was produced by the B. braunii strains SAG 30.81 and LB-572, respectively) and hydrocarbon production (46% and 33%, respectively, by SAG 30.81 and LB 572 strains on dry weight basis) whereas continuous illumination with agitation at 90rpm had maximum influence for the production of exopolysaccharides. The results of the present study indicate that the organism can acclimatize to different culture conditions and to a wide range of culture media with production of more than one metabolite. (author)

  11. Bio-electrochemical synthesis of commodity chemicals by autotrophic acetogens utilizing CO_{2} for environmental remediation

    Indian Academy of Sciences (India)

    GUGAN JABEEN; ROBINA FAROOQ

    2016-09-01

    Bio-electrochemical synthesis (BES) is a technique in which electro-autotrophic bacteria such as Clostridiumljungdahlii utilize electric currents as an electron source from the cathode to reduce CO_{2} to extracellular, multicarbon,exquisite products through autotrophic conversion. The BES of volatile fatty acids and alcohols directly fromCO_{2} is a sustainable alternative for non-renewable, petroleum-based polymer production. This conversion ofCO_{2} implies reduction of greenhouse gas emissions. The synthesis of heptanoic acid, heptanol, hexanoic acidand hexanol, for the first time, by Clostridium ljungdahlii was a remarkable achievement of BES. In ourstudy, these microorganisms were cultivated on the cathode of a bio-electrochemical cell at −400 mV by aDC power supply at 37°C, pH 6.8, and was studied for both batch and continuous systems. Pre-enrichment ofbio-cathode enhanced the electroactivity of cells and resulted in maximizing extracellular products in lesstime. The main aim of the research was to investigate the impact of low-cost substrate CO_{2}, and the longercathode recovery range was due to bacterial reduction of CO_{2} to multicarbon chemical commodities withelectrons driven from the cathode. Reactor design was simplified for cost-effectiveness and to enhance energyefficiencies. The Columbic recovery of ethanoic acid, ethanol, ethyl butyrate, hexanoic acid, heptanoic acidand hexanol being in excess of 80% proved that BES was a remarkable technology.

  12. Absorption and utilization of organic matter by the strict autotroph, Thiobacillus thiooxidans, with special reference to aspartic acid.

    Science.gov (United States)

    Butler, R G; Umbreit, W W

    1966-02-01

    Butler, Richard G. (Rutgers, The State University, New Brunswick, N.J.), and Wayne W. Umbreit. Absorption and utilization of organic matter by the strict autotroph, Thiobacillus thiooxidans, with special reference to aspartic acid. J. Bacteriol. 91:661-666. 1966.-The strictly autotrophic bacterium, Thiobacillus thiooxidans, can be shown to assimilate a variety of organic materials. Aspartic acid can be assimilated into protein and can be converted into CO(2), but even in the presence of sulfur it cannot serve as the sole source of carbon for growth. The reason appears to be that aspartic acid is converted into inhibitory materials.

  13. Peptide-based FeS4 complexes: the zinc ribbon fold is unsurpassed to stabilize both the FeII and FeIII states.

    Science.gov (United States)

    Jacques, Aurélie; Latour, Jean-Marc; Sénèque, Olivier

    2014-03-14

    Whereas Zn(Cys)4 zinc fingers exist with different protein folds, only the zinc ribbon fold is found in rubredoxin Fe(Cys)4 sites. To assess the significance of this observation, we have investigated the binding and stability of Fe(2+) and Fe(3+) ions by a set of four peptides designed to model Zn(Cys)4 zinc fingers with various folds, i.e. zinc ribbon, treble clef and a loosened zinc ribbon fold. All peptides were shown by means of UV-Vis and CD spectroscopies to form stable 1 : 1 Fe(II)/peptide complexes with binding constants higher than 10(7) M(-1) at pH 7. Their oxidation into Fe(III) complexes and the stability of the latter were compared. The UV-Vis absorption and CD spectroscopic properties of the Fe(II) and Fe(III) complexes were analysed with respect to the structures of the zinc analogues in order to get insight into the local arrangement of the Fe(Cys)4 core around the metal ion. The chemical stability of these complexes was rationalized according to the shielding from the solvent provided by the various peptide folds to the FeS4 core. In addition, we showed that whereas UV-visible spectra inform only on the FeS4, the information derived from the corresponding CD spectra extend to the Cβ orientation and the peptide fold. The results presented here demonstrate that while the zinc ribbon fold is not strictly required to obtain a Fe(Cys)4 site, it affords a drastically superior protection of the site toward external redox agents. This finding brings new clues to engineer stable and redox-active Fe(Cys)4 sites in de novo proteins.

  14. Mn(II)/Mn(III) and Fe(III) binding capability of two Aspergillus fumigatus siderophores, desferricrocin and N', N″, N‴-triacetylfusarinine C.

    Science.gov (United States)

    Farkas, Etelka; Szabó, Orsolya; Parajdi-Losonczi, Péter L; Balla, György; Pócsi, István

    2014-10-01

    Manganese(II) and manganese(III) complexes of the exocyclic desferricrocin (H3DFCR) and endocyclic triacetylfusarinine C (H3TAF) in solution have been studied by using pH-potentiometry, UV-Vis spectrophotometry, relaxometry and cyclic voltammetry. A comparison between the present results and the corresponding ones for the open-chain analogues, desferrioxamine B (DFB) and desferricoprogen (DFC), shows (i) The dissociation processes of H3DFCR occur in the expected pH-range (pH7-10.5), but hydrogen bonding is assumed to be responsible for a quite low proton dissociation constant (pK=4.18) of H3TAF and also an unusually high one (10.59). (ii) Moderate stability complexes with 1:1 Mn(II) to ligand ratio are formed with all four siderophores. (iii) The coordination of the three hydroxamates of a siderophore takes place in stepwise processes, except the case of desferricrocin, with which, large-extent overlapping of the processes occurs. (iv) Out of the four tris-chelated [ML] type complexes, the complex of DFCR is the most compact, as it is indicated by the relaxivity values. (v) Following the stoichiometric oxidation of the Mn(II)-siderophore complexes at pH≥9, tris-chelated Mn(III) complexes are formed. To make a comparison between the stability of the Mn(III) and the corresponding Fe(III) complexes of DFCR and TAF, the determination of the stability of the Fe(III) complexes under our condition has also been performed, by using UV-Vis spectrophotometry. Comparable stability of the corresponding complexes was found. (vi) Correlation study of the stability constants resulted in estimation of the constant of the Mn(III) monohydroxo complex, for which there was no data in the literature under our conditions.

  15. Photochemical Formation of Fe(II) in the Aqueous Solutions of Fe(III)- Dicarboxylates

    Science.gov (United States)

    Okada, K.; Arakaki, T.

    2007-12-01

    Although there have been many studies reporting the photochemical formation of Fe(II) in various aqueous-phase such as rain, cloud waters, seawater and aerosols, the detailed formation mechanisms are not well understood. To better understand the mechanisms of Fe(II) formation, we attempted to determine the molar absorptivity and the quantum yield of Fe(II) photoformation for individual Fe(III)-dicarboxylate species. The concentrations of Fe(II) and total dissolved Fe were measured by a Ferrozine-HPLC method. The Visual MINTEQ computer program was used to calculate the equilibrium concentrations of chemical species in the solutions of Fe(III)-dicarboxylate complexes. The molar absorptivity and the product of the quantum yield and the molar absorptivity of Fe(III)- dicarboxylate complex can be analysed by UV-VIS spectrophotometer and photochemical experiments, and these experimental data were combined with the calculated equilibrium Fe(III) speciation to determine individual molar absorptivity and quantum yield of Fe(II) photoformation for a specific Fe(III)-dicarboxylate complex. Preliminary results, using an oxalate whose quantum yield has been previously reported, indicate that this approach gives lower quantum yield values in air saturated solutions than previously reported.

  16. OmcB, a c-Type Polyheme Cytochrome, Involved in Fe(III) Reduction in Geobacter sulfurreducens

    OpenAIRE

    2003-01-01

    Microorganisms in the family Geobacteraceae are the predominant Fe(III)-reducing microorganisms in a variety of subsurface environments in which Fe(III) reduction is an important process, but little is known about the mechanisms for electron transport to Fe(III) in these organisms. The Geobacter sulfurreducens genome was found to contain a 10-kb chromosomal duplication consisting of two tandem three-gene clusters. The last genes of the two clusters, designated omcB and omcC, encode putative o...

  17. An operation protocol for facilitating start-up of single-stage autotrophic nitrogen removing reactors based on process stoichiometry

    DEFF Research Database (Denmark)

    Mutlu, A. Gizem; Vangsgaard, Anna Katrine; Sin, Gürkan;

    2012-01-01

    Start-up and operation of single-stage nitritation/anammox reactor employing complete autotrophic nitrogen can be difficult. Keeping the performance criteria and monitoring the microbial community composition may not be easy or fast enough to take action on time. In this study, a control strategy...

  18. Nutrients removal and nitrous oxide emission during simultaneous nitrification, denitrification, and phosphorus removal process: effect of iron.

    Science.gov (United States)

    Jia, Wenlin; Wang, Qian; Zhang, Jian; Yang, Weihua; Zhou, Xiaowei

    2016-08-01

    The short- and long-term influences of ferric iron (Fe(III)) on nutrients removal and nitrous oxide (N2O) emission during SNDPR process were evaluated. According to the continuous cycle experiments, it was concluded that the addition of Fe(III) could lower the nitrogen removal of the following cycle during SNDPR process, which was mainly induced by the chemical removal of phosphorus. However, the impacts were transitory, and simultaneous nitrogen and phosphorus removal would recover from the inhibition of Fe(III) after running certain cycles. Moreover, the addition of Fe(III) could stimulate N2O emission transitorily during SNDPR process. However, if Fe(III) was added into reactor continuously, the nitrogen removal would be improved, especially at low Fe load condition. It was because that the activity of NO reductase was enhanced by the addition of Fe. However, the low Fe load in reactor would induce more N2O emission. When Fe(III) load was 40 mg/L in the reactor, the N2O yield was 10 % higher than control. The TN removal was weakened when Fe(III) load reached to 60 mg/L, and the N2O yield was lower than control, due to the inhibition of the high Fe load on denitrification enzymes.

  19. Biodegradation of tetramethylammonium hydroxide (TMAH) in completely autotrophic nitrogen removal over nitrite (CANON) process.

    Science.gov (United States)

    Chen, Shen-Yi; Lu, Li-An; Lin, Jih-Gaw

    2016-06-01

    This study conducted a completely autotrophic nitrogen removal over nitrite (CANON) process in a continuous anoxic upflow bioreactor to treat synthetic wastewater with TMAH (tetramethylammonium hydroxide) ranging from 200 to 1000mg/L. The intermediates were analyzed for understanding the metabolic pathway of TMAH biodegradation in CANON process. In addition, (15)N-labeled TMAH was used as the substrate in a batch anoxic bioreactor to confirm that TMAH was converted to nitrogen gas in CANON process. The results indicated that TMAH was almost completely biodegraded in CANON system at different influent TMAH concentrations of 200, 500, and 1000mg/L. The average removal efficiencies of total nitrogen were higher than 90% during the experiments. Trimethylamine (TMA) and methylamine (MA) were found to be the main biodegradation intermediates of TMAH in CANON process. The production of nitrogen gas with (15)N-labeled during the batch anaerobic bioreactor indicated that CANON process successfully converted TMAH into nitrogen gas.

  20. [Expression of phosphofructokinase gene from Escherichia coli K-12 in obligately autotrophic bacterium Acidithiobacillus thiooxidans].

    Science.gov (United States)

    Tian, Keli; Lin, Jianqun; Liu, Xiangmei; Liu, Ying; Zhang, Changkai

    2003-10-01

    A plasmid pSDK-1 containing the Escherichia coli phosphofructokinase-1 (EC 2.7.1. 11) gene (pfkA) was constructed and transferred into Acidithiobacillus thiooxidans Tt-Z2 by conjugation. The transfer frequency of plasmid from E. coli to Tt-Z2 was 2.6 x 10(-6). More than 68% of Tt-Z2 cells carried the recombinant plasmids after being cultured for 50 generations without selective pressure, which showed that pSDK-1 was maintained consistently in Tt-Z2. The pfkA gene from E. coli could be expressed in this obligately autotrophic bacterium but the enzyme activity (14 U/g was lower than that in E. coli (K-12: 86 U/g; DF1010 carrying plasmid pSDK-1: 97 U/g). In th presence of glucose, the Tt-Z2 transconjugant consumed glucose leading to a better growth yield.

  1. THE BIOENERGETICS OF AMMONIA AND HYDROXYLAMINE OXIDATION IN NITROSOMONAS-EUROPAEA AT ACID AND ALKALINE PH

    NARCIS (Netherlands)

    FRIJLINK, MJ; ABEE, T; LAANBROEK, HJ; DEBOER, W; KONINGS, WN

    1992-01-01

    Autotrophic ammonia oxidizers depend on alkaline or neutral conditions for optimal activity. Below pH 7 growth and metabolic activity decrease dramatically. Actively oxidizing cells of Nitrosomonas europaea do not maintain a constant internal pH when the external pH is varied from 5 to 8. Studies of

  2. Membrane biofouling in a wastewater nitrification reactor: microbial succession from autotrophic colonization to heterotrophic domination

    KAUST Repository

    Lu, Huijie

    2015-10-22

    Membrane biofouling is a complex process that involves bacterial adhesion, extracellular polymeric substances (EPS) excretion and utilization, and species interactions. To obtain a better understanding of the microbial ecology of biofouling process, this study conducted rigorous, time-course analyses on the structure, EPS and microbial composition of the fouling layer developed on ultrafiltration membranes in a nitrification bioreactor. During a 14-day fouling event, three phases were determined according to the flux decline and microbial succession patterns. In Phase I (0-2 days), small sludge flocs in the bulk liquid were selectively attached on membrane surfaces, leading to the formation of similar EPS and microbial community composition as the early biofilms. Dominant populations in small flocs, e.g., Nitrosomonas, Nitrobacter, and Acinetobacter spp., were also the major initial colonizers on membranes. In Phase II (2-4 d), fouling layer structure, EPS composition, and bacterial community went through significant changes. Initial colonizers were replaced by fast-growing and metabolically versatile heterotrophs (e.g., unclassified Sphingobacteria). The declining EPS polysaccharide to protein (PS:PN) ratios could be correlated well with the increase in microbial community diversity. In Phase III (5-14 d), heterotrophs comprised over 90% of the community, whereas biofilm structure and EPS composition remained relatively stable. In all phases, AOB and NOB were constantly found within the top 40% of the fouling layer, with the maximum concentrations around 15% from the top. The overall microbial succession pattern from autotrophic colonization to heterotrophic domination implied that MBR biofouling could be alleviated by forming larger bacterial flocs in bioreactor suspension (reducing autotrophic colonization), and by designing more specific cleaning procedures targeting dominant heterotrophs during typical filtration cycles.

  3. Membrane biofouling in a wastewater nitrification reactor: Microbial succession from autotrophic colonization to heterotrophic domination.

    Science.gov (United States)

    Lu, Huijie; Xue, Zheng; Saikaly, Pascal; Nunes, Suzana P; Bluver, Ted R; Liu, Wen-Tso

    2016-01-01

    Membrane biofouling is a complex process that involves bacterial adhesion, extracellular polymeric substances (EPS) excretion and utilization, and species interactions. To obtain a better understanding of the microbial ecology of biofouling process, this study conducted rigorous, time-course analyses on the structure, EPS and microbial composition of the fouling layer developed on ultrafiltration membranes in a nitrification bioreactor. During a 14-day fouling event, three phases were determined according to the flux decline and microbial succession patterns. In Phase I (0-2 days), small sludge flocs in the bulk liquid were selectively attached on membrane surfaces, leading to the formation of similar EPS and microbial community composition as the early biofilms. Dominant populations in small flocs, e.g., Nitrosomonas, Nitrobacter, and Acinetobacter spp., were also the major initial colonizers on membranes. In Phase II (2-4 d), fouling layer structure, EPS composition, and bacterial community went through significant changes. Initial colonizers were replaced by fast-growing and metabolically versatile heterotrophs (e.g., unclassified Sphingobacteria). The declining EPS polysaccharide to protein (PS:PN) ratios could be correlated well with the increase in microbial community diversity. In Phase III (5-14 d), heterotrophs comprised over 90% of the community, whereas biofilm structure and EPS composition remained relatively stable. In all phases, AOB and NOB were constantly found within the top 40% of the fouling layer, with the maximum concentrations around 15% from the top. The overall microbial succession pattern from autotrophic colonization to heterotrophic domination implied that MBR biofouling could be alleviated by forming larger bacterial flocs in bioreactor suspension (reducing autotrophic colonization), and by designing more specific cleaning procedures targeting dominant heterotrophs during typical filtration cycles.

  4. Residence time of carbon substrate for autotrophic respiration of a grassland ecosystem correlates with the carbohydrate status of its vegetation

    Science.gov (United States)

    Ostler, Ulrike; Lehmeier, Christoph A.; Schleip, Inga; Schnyder, Hans

    2016-04-01

    Ecosystem respiration is composed of two component fluxes: (1) autotrophic respiration, which comprises respiratory activity of plants and plant-associated microbes that feed on products of recent photosynthetic activity and (2) heterotrophic respiration of microbes that decompose organic matter. The mechanistic link between the availability of carbon (C) substrate for ecosystem respiration and its respiratory activity is not well understood, particularly in grasslands. Here, we explore, how the kinetic features of the supply system feeding autotrophic ecosystem respiration in a temperate humid pasture are related to the content of water-soluble carbohydrates and remobilizable protein (as potential respiratory substrates) in vegetation biomass. During each September 2006, May 2007 and September 2007, we continuously labeled 0.8 m2 pasture plots with 13CO2/12CO2 and observed ecosystem respiration and its tracer content every night during the 14-16 day long labeling periods. We analyzed the tracer kinetics with a pool model, which allowed us to precisely partition ecosystem respiration into its autotrophic and heterotrophic flux components. At the end of a labeling campaign, we harvested aboveground and belowground plant biomass and analyzed its non-structural C contents. Approximately half of ecosystem respiration did not release any significant amount of tracer during the labeling period and was hence characterized as heterotrophic. The other half of ecosystem respiration was autotrophic, with a mean residence time of C in the respiratory substrate pool between 2 and 6 d. Both the rate of autotrophic respiration and the turnover of its substrate supply pool were correlated with plant carbohydrate content, but not with plant protein content. These findings are in agreement with studies in controlled environments that revealed water-soluble carbohydrates as the main substrate and proteins as a marginal substrate for plant respiration under favorable growth conditions

  5. Can we distinguish autotrophic respiration from heterotrophic respiration in a field site using high temporal resolution CO2 flux measurements?

    Science.gov (United States)

    Biro, Beatrice; Berger, Sina; Praetzel, Leandra; Blodau, Christian

    2016-04-01

    The processes behind C-cycling in peatlands are important to understand for assessing the vulnerability of peatlands as carbon sinks under changing climate conditions. Especially boreal peatlands are likely to underlie strong alterations in the future. It is expected that C-pools that are directly influenced by vegetation and water table fluctuations can be easily destabilized. The CO2 efflux through respiration underlies autotrophic and heterotrophic processes that show different feedbacks on changing environmental conditions. In order to understand the respiration fluxes better for more accurate modelling and prognoses, the determination of the relative importance of different respiration sources is necessary. Earlier studies used e.g. exfoliation experiments, incubation experiments or modelling approaches to estimate the different respiration sources for the total ecosystem respiration (Reco). To further the understanding in this topic, I want to distinguish autotrophic and heterotrophic respiration using high temporal resolution measurements. The study site was selected along a hydrological gradient in a peatland in southern Ontario (Canada) and measurements were conducted from May to September 2015 once per month. Environmental controls (water table, soil temperature and soil moisture) that effect the respiration sources were recorded. In my study I used a Li-COR 6400XT and a Los Gatos greenhouse gas analyzer (GGA). Reco was determined by chamber flux measurements with the GGA, while simultaneously CO2 respiration measurements on different vegetation compartments like roots, leaves and mosses were conducted using the Li-COR 6400XT. The difference between Reco and autotrophic respiration equals heterotrophic respiration. After the measurements, the vegetation plots were harvested and separated for all compartments (leaves, roots, mosses, soil organic matter), dried and weighed. The weighted respiration rates from all vegetation compartments sum up to

  6. Heterocyclic tri-urea isocyanurate bridged groups modified periodic mesoporous organosilica synthesized for Fe(III) adsorption

    Energy Technology Data Exchange (ETDEWEB)

    Rana, Vijay Kumar [Department of Polymer Science and Engineering, Pusan National University, Busan 609-735 (Korea, Republic of); Department of Chemical Technology, North Maharashtra University Jalgaon-425001 (India); Division of Polymer Science and Engineering, National Chemical Laboratory, Pune-411 008 (India); Selvaraj, M. [Department of Chemical and Biomolecular Engineering, Pusan National University, Geumjeong-gu, Busan 609-735 (Korea, Republic of); Parambadath, Surendran; Chu, Sang-Wook; Park, Sung Soo [Department of Polymer Science and Engineering, Pusan National University, Busan 609-735 (Korea, Republic of); Mishra, Satyendra [Department of Chemical Technology, North Maharashtra University Jalgaon-425001 (India); Singh, Raj Pal [Division of Polymer Science and Engineering, National Chemical Laboratory, Pune-411 008 (India); Ha, Chang-Sik, E-mail: csha@pnu.edu [Department of Polymer Science and Engineering, Pusan National University, Busan 609-735 (Korea, Republic of)

    2012-10-15

    To achieve a high level of heavy metal adsorption, 1,1 Prime ,1 Double-Prime -(1,3,5-triazine-2,4,6-triyl)tris(3-(3-(triethoxysilyl)propyl)urea) (TTPU) was synthesized as a novel melamine precursor and incorporated on the silica surface of periodic mesoporous organosilica (PMO). The melamine modified PMOs (MPMOs) were synthesized under acidic conditions using TTPU, tetraethylorthosilicate (TEOS) and Pluronic P123 as a template and the modified PMOs were characterized using the relevant instrumental techniques. The characteristic materials were used as adsorbents for the adsorption of Fe(III) ions. Fe(III) adsorption studies revealed MPMO-7.5 to be a good absorbent with higher adsorption efficiency than other MPMOs. - Graphical Abstract: A new organosilica precursor, TTPU, has been successfully synthesized and characterized to incorporate on the silica surface of periodic mesoporous organosilica (PMO). The melamine modified PMOs (MPMOs), in particular, the MPMO-7.5 was found to exhibit good adsorption efficiency for Fe(III). Highlights: Black-Right-Pointing-Pointer Synthesis of new melamine modified periodic mesoporous organosilicas (MPMOs). Black-Right-Pointing-Pointer A new organosilica precursor, TTPU, has been successfully synthesized for the MPMOs. Black-Right-Pointing-Pointer The MPMOs were characterized by the relevant instrumental techniques. Black-Right-Pointing-Pointer MPMO-7.5 exhibits higher adsorption efficiency for Fe(III) ions than other MPMOs.

  7. A comparative study for the ion exchange of Fe(III) and Zn(II) on zeolite NaY.

    Science.gov (United States)

    Ostroski, Indianara C; Barros, Maria A S D; Silva, Edson A; Dantas, João H; Arroyo, Pedro A; Lima, Oswaldo C M

    2009-01-30

    The uptake capacity of Fe(III) and Zn(II) ions in NaY zeolite was investigated. Experiments were carried out in a fixed bed column at 30 degrees C, pH 3.5 and 4.5 for Fe(III) and Zn(II), respectively, and an average particle size of 0.180 mm. In order to minimize the diffusional resistances the influence of flow rate on the breakthrough curves at feed concentrations of 1.56 meq/L for Fe(III) and 0.844 meq/L for Zn(II) was investigated. Flow rate of the minimal resistance in the bed according to mass transfer parameter were 2.0 mL/min for iron and 8.0 mL/min for zinc ions. Freundlich and Langmuir isotherm models have been used to represent the column equilibrium data. The iron dynamic isotherm was successfully modeled by the Langmuir equation and this mathematical model described well the experimental breakthrough curves for feed concentrations from 0.1 up to 3.5 meq/L. The zinc dynamic isotherm was successfully modeled by the Freundlich equation. This equilibrium model was applied to mathematical model. Experimental breakthrough curves could be predicted. Experiments were also carried out in a batch reactor to investigate the kinetics adsorption of the ions Fe(III) and Zn(II). Langmuir kinetic model fit well both experimental data.

  8. Spectroelectrochemistry of Fe(III)- and Co(III)-mimochrome VI artificial enzymes immobilized on mesoporous ITO electrodes.

    Science.gov (United States)

    Vitale, R; Lista, L; Lau-Truong, S; Tucker, R T; Brett, M J; Limoges, B; Pavone, V; Lombardi, A; Balland, V

    2014-02-21

    UV-visible absorption spectroelectrochemistry elucidated the different redox behaviours of Fe(III)- and Co(III)-mimochrome VI artificial enzymes, adsorbed on mesoporous conductive films of ITO. The reduction of the ferric complex was rapid and reversible, while the cobaltic complex exhibited irreversible processes probably related to multiple coordination states.

  9. Oxidation of Dodecanoate Intercalated Iron(II)–Iron(III) Layered Double Hydroxide to Form 2D Iron(III) (Hydr)oxide Layers

    DEFF Research Database (Denmark)

    Huang, Li‐Zhi; Ayala‐Luis, Karina B.; Fang, Liping;

    2013-01-01

    A planar trioctahedral iron(II)–iron(III) hydroxide (green rust, GR) intercalated with dodecanoate (GRC12) has been oxidized by dioxygen to produce the corresponding planar iron(III) (hydr)oxide. The formulae of GRC12 and the final iron(III) product (oxGRC12) were determined to be FeII2.00FeIII1...

  10. Condutividade da Polianilina e Poliacrilonitrila Dopadas com Fe(II e Fe(III

    Directory of Open Access Journals (Sweden)

    Yonis Fornazier Filho

    2015-01-01

    Full Text Available In this work we report O estudo da interação de íons Fe(II com a polianilina foi feito através da obtenção deste polímero na forma de salthe studies on Polyaniline Emeraldine (PANI-ES and Polyacrilonitrile (PAN doped with salt of Fe (II and Fe(III. We used the techniques of conductivity measurements with aplicação de pressão.application of pressure.  The results showed that conductivity of PANI-ES increase with pressure of range of 1.73 MPa until 20.0 MPa and PAN also increase with maximum of 6.0 mPa except to samples PAN-2-TT-FeIII and PAN-2-TTAA-FeIII.

  11. Studies on a Novel Actinobacteria Species Capable of Oxidizing Ammonium under Iron Reduction Conditions

    Science.gov (United States)

    Huanh, Shan; Ruiz-Urigüen, Melany; Jaffe, Peter R.

    2014-05-01

    Ammonium (NH4+) oxidation coupled to iron reduction in the absence of oxygen and nitrate/nitrite (NO3-/NO2-) was noted in a forested riparian wetland in New Jersey (1,2), and in tropical rainforest soils (3), and was coined Feammox (4). Through a 180-days anaerobic incubation of soil samples collected at the New Jersey site, and using 16S rDNA PCR-DGGE, 454-pyosequecing, and qPCR analysis, we have shown that an Acidimicrobiaceae bacterium A6, belonging to the phylum Actinobacteria, is responsible for this Feammox process, described previously (1,2). We have enriched these Feammox bacteria in a high efficiency Feammox membrane reactor (with 85% NH4+removal per 48h), and isolated the pure Acidimicrobiaceae bacterium A6 strain 5, in an autotrophic medium. To determine if the Feammox bacteria found in this study are common, at least at the regional scale, we analyzed a series of local wetland-, upland-, as well as storm-water detention pond-sediments. Through anaerobic incubations and molecular biology analysis, the Feammox reaction and Acidimicrobiaceae bacterium A6 were found in three of twenty soil samples collected, indicating that the Feammox pathway might be widespread in selected soil environments. Results show that soil pH and Fe(III) content are key environmental factors controlling the distributions of Feammox bacteria, which require acidic conditions and the presence of iron oxides. Results from incubation experiments conducted at different temperatures have shown that, in contrast to another anaerobic ammonium oxidation pathways (e.g., anammox), the optimal temperature of the Feammox process is ~ 20° and that the organisms are still active when the temperature is around 10°. An incubation experiment amended with acetylene gas (C2H2) as a selected inhibitor showed that in the Feammox reaction, Fe(III) is the electron acceptor, which is reduced to Fe(II), and NH4+is the electron donor, which is oxidized to NO2-. After this process, NO2- is converted to

  12. Biological removal of nitrate by an oil reservoir culture capable of autotrophic and heterotrophic activities: kinetic evaluation and modeling of heterotrophic process.

    Science.gov (United States)

    An, Shijie; Stone, Heather; Nemati, Mehdi

    2011-06-15

    Kinetics of heterotrophic denitrification was investigated using an oil reservoir culture with the ability to function under both autotrophic and heterotrophic conditions. In the batch system nitrate at concentrations up to 30 mM did not influence the kinetics but with 50mM slower growth and removal rates were observed. A kinetic model, representing the denitrification as reduction of nitrate to nitrite, and subsequent reduction of nitrite to nitrous oxides and nitrogen gas was developed. The value of various kinetic coefficients, including maximum specific growth rate, saturation constant, yield and activation energy for nitrate and nitrite reductions were determined by fitting the experimental data into the developed model. In continuous bioreactors operated with 10 or 30 mM nitrate, complete removal of nitrate (no residual nitrite) and linear dependency between nitrate loading and removal rates were observed for loading rates up to 0.21 and 0.58 mM h(-1), respectively. The highest removal rates of 0.31 and 0.94 mM h(-1) observed at loading rates of 0.42 mM h(-1) and 1.26 mM h(-1), with corresponding removal percentages of nitrate and total nitrogen being 75.4, 54.4%, and 74.4 and 17.9%, respectively. Developed kinetic model predicted the performance of the continuous bioreactors with accuracy.

  13. Separating Autotrophic and Heterotrophic Contributions to Soil Respiration in Maize-Based Agroecosystems Using Stable Carbon Isotope Ratio Mass Spectrometry.

    Science.gov (United States)

    Amos, B.; Walters, D. T.; Madhavan, S.; Arkebauer, T. J.; Scoby, D. L.

    2005-12-01

    Any effort to establish a carbon budget for a growing crop by means of a thorough accounting of all C sources and sinks will require the ability to discriminate between autotrophic and heterotrophic contributions to soil surface CO2 flux. Autotrophic soil respiration (Ra) is defined as combined root respiration and the respiration of soil microorganisms residing in the rhizosphere and using root-derived carbohydrates as an energy source, while heterotrophic respiration (Rh) is defined as the respiration of soil microorganisms and macroorganisms not directly under the influence of the live root system and using SOM as an energy source. We partition soil surface CO2 flux into its autotrophic and heterotrophic components by combining root exclusion with stable carbon isotope techniques in production scale (~65 ha) maize-based agroecosystems. After flux measurements, small chambers are placed on collars in both root excluded shields and in non-root excluded soil, ambient headspace CO2 is removed using a soda lime trap, and soil-respired C is allowed to collect in the chambers. Soil respiration samples are then collected in 12mL evacuated exetainers and analyzed for δ13C by means of a Finnigan Delta-S isotope ratio mass spectrometer interfaced with a Thermo Finnigan GasBench II and a cryogenic trap to increase CO2 concentration. These δ13C measurements were made throughout the 2005 growing season in maize fields representing three agroecosystems: irrigated continuous maize, irrigated maize-soybean rotation, and rainfed maize soybean rotation. Estimates of autotrophic and heterotrophic soil respiration along with other results of this study will be presented.

  14. Investigating the association between photosynthetic efficiency and generation of biophotoelectricity in autotrophic microbial fuel cells

    Science.gov (United States)

    Ciniciato, Gustavo P. M. K.; Ng, Fong-Lee; Phang, Siew-Moi; Jaafar, Muhammad Musoddiq; Fisher, Adrian C.; Yunus, Kamran; Periasamy, Vengadesh

    2016-08-01

    Microbial fuel cells operating with autotrophic microorganisms are known as biophotovoltaic devices. It represents a great opportunity for environmentally-friendly power generation using the energy of the sunlight. The efficiency of electricity generation in this novel system is however low. This is partially reflected by the poor understanding of the bioelectrochemical mechanisms behind the electron transfer from these microorganisms to the electrode surface. In this work, we propose a combination of electrochemical and fluorescence techniques, giving emphasis to the pulse amplitude modulation fluorescence. The combination of these two techniques allow us to obtain information that can assist in understanding the electrical response obtained from the generation of electricity through the intrinsic properties related to the photosynthetic efficiency that can be obtained from the fluorescence emitted. These were achieved quantitatively by means of observed changes in four photosynthetic parameters with the bioanode generating electricity. These are the maximum quantum yield (Fv/Fm), alpha (α), light saturation coefficient (Ek) and maximum rate of electron transfer (rETRm). The relationship between the increases in the current density collected by the bioanode to the decrease of the rETRm values in the photosynthetic pathway for the two microorganisms was also discussed.

  15. Nitrate removal and microbial analysis by combined micro-electrolysis and autotrophic denitrification.

    Science.gov (United States)

    Xing, Wei; Li, Desheng; Li, Jinlong; Hu, Qianyi; Deng, Shihai

    2016-07-01

    A process combining micro-electrolysis and autotrophic denitrification (CEAD) with iron-carbon micro-electrolysis carriers was developed for nitrate removal. The process was performed using organic-free influent with a NO3(-)-N concentration of 40.0±3.0mg/L and provided an average nitrate removal efficiency of 95% in stable stages. The total nitrogen removal efficiency reached 75%, with 21% of NO3(-)-N converted into NH4(+)-N. The corresponding hydraulic retention time was 8-10h, and the optimal pH ranged from 8.5 to 9.5. Microbial analysis with high-throughput sequencing revealed that dominant microorganisms in the reactor belonged to the classes of β-, γ-, and α-Proteobacteria. The abundance of the genera Thermomonas significantly increased during the operation, comprising 21.4% and 24.1% in sludge attached to the carriers in the middle and at the bottom of the reactor, respectively. The developed CEAD achieved efficient nitrate removal from water without organics, which is suitable for practical application.

  16. A study of autotrophic communities in two Victoria Land lakes (Continental Antarctica using photosynthetic pigments

    Directory of Open Access Journals (Sweden)

    Roberto BARGAGLI

    2010-08-01

    Full Text Available The composition of algal pigments and extracellular polymeric substances (EPS was determined in microbial mats from two lakes in Victoria Land (Continental Antarctica with different lithology and environmental features. The aim was to expand knowledge of benthic autotrophic communities in Antarctic lacustrine ecosystems, providing reference data for future assessment of possible changes in environmental conditions and freshwater communities. The results of chemical analyses were supported by microscopy observations. Pigment profiles showed that filamentous cyanobacteria are dominant in both lakes. Samples from the water body at Edmonson Point had greater biodiversity, fewer pigments and lower EPS ratios than those from the lake at Kar Plateau. Differences in mat composition and in pigment and EPS profile between the two lakes are discussed in terms of local environmental conditions such as lithology, ice-cover and UV radiation. The present study suggests that a chemical approach could be useful in the study of benthic communities in Antarctic lakes and their variations in space and time.

  17. A unique homodimeric NAD⁺-linked isocitrate dehydrogenase from the smallest autotrophic eukaryote Ostreococcus tauri.

    Science.gov (United States)

    Tang, Wang-Gang; Song, Ping; Cao, Zheng-Yu; Wang, Peng; Zhu, Guo-Ping

    2015-06-01

    In eukaryotes, NAD(+)-dependent isocitrate dehydrogenase (IDH) is strictly mitochondrial and is a key enzyme in the Krebs cycle. To date, all known NAD(+)-specific IDHs (NAD-IDHs) in the mitochondria are believed to be heteromeric in solution. Here, a unique homodimeric NAD-IDH from Ostreococcus tauri (OtIDH), the smallest autotrophic picoeukaryote, was unveiled. Active OtIDH has a molecular weight of ∼93 kDa with each subunit of 46.7 kDa. In the presence of Mn(2+) and Mg(2+), OtIDH displayed 42-fold and 51-fold preference for NAD(+) over NADP(+), respectively. Interestingly, OtIDH exhibited a sigmoidal kinetic behavior in response to isocitrate unlike other homodimeric homologs, and a remarkably high affinity for isocitrate (S0.5 < 10 μM) unlike other hetero-oligomeric homologs. Furthermore, its coenzyme specificity can be completely converted from NAD(+) (ancient trait) to NADP(+) (adaptive trait) by rational mutagenesis based on the evolutionary trace. Mutants D344R and D344R/M345H displayed a 15-fold and 72-fold preference for NADP(+) over NAD(+), respectively, indicating that D344 and M345 are the determinants of NAD(+) specificity. These findings also suggest that OtIDH may be an ancestral form of type II IDHs (all reported members are NADP(+)-linked enzymes) and may have evolved into NADP(+)-dependent IDH for adaptation to the increased demand of NADPH under carbon starvation.

  18. Performance of completely autotrophic nitrogen removal over nitrite process under different aeration modes and dissolved oxygen

    Institute of Scientific and Technical Information of China (English)

    Jinsong GUO; Guohong YANG; Fang FANG; Yu QIN

    2008-01-01

    In this study, three sequential batch biofilm reactors (SBBRs) were operated for 155 days to evaluate the performance of completely autotrophic nitrogen removal over nitrite (CANON) process under different aeration modes and dissolved oxygen (DO). Synthetic wastewater with 160-mg NH4+-N/L was fed into the reac-tors. In the continuously-aerated reactor, the efficiency of the ammonium nitrogen conversion and total nitrogen (TN) removal reached 80% and 70%, respectively, with DO between 0.8-1.0 mg/L. Whereas in the intermit-tently-aerated reactor, at the aeration/non-aeration ratio of 1.0, ammonium was always under the detection limit and 86% of TN was removed with DO between 2.0 2.5 mg/L during the aeration time. Results show that CANON could be achieved in both continuous and inter-mittent aeration pattern. However, to achieve the same nitrogen removal efficiency, the DO needed in the inter-mittently-aerated sequential batch biofilm reactor (SBBR) during the aeration period was higher than that in the continuously-aerated SBBR. In addition, the DO in the CANON system should be adjusted to the aeration mode, and low DO was not a prerequisite to CANON process.

  19. Intrinsic autotrophic biomass yield and productivity in algae: modeling spectral and mixing-rate dependence.

    Science.gov (United States)

    Holland, Alexandra D; Wheeler, Dean R

    2011-05-01

    For non-inhibitory irradiances, the rate of algal biomass synthesis was modeled as the product of the algal autotrophic yield Φ(DW) and the flux of photons absorbed by the culture, as described using Beer-Lambert law. As a contrast to earlier attempts, the use of scatter-corrected extinction coefficients enabled the validation of such approach, which bypasses determination of photosynthesis-irradiance (PI) kinetic parameters. The broad misconception that PI curves, or the equivalent use of specific growth rate expressions independent of the biomass concentration, can be extended to adequately model biomass production under light-limitation is addressed. For inhibitory irradiances, a proposed mechanistic model, based on the photosynthetic units (PSU) concept, allows one to estimate a target speed νT across the photic zone in order to limit the flux of photons per cell to levels averting significant reductions in Φ(DW) . These modeled target speeds, on the order of 5-20 m s(-1) for high outdoor irradiances, call for fundamental changes in reactor design to optimize biomass productivity. The presented analysis enables a straightforward bioreactor parameterization, which, in-turn, guides the establishment of conditions ensuring maximum productivity and complete nutrients consumption. Additionally, solar and fluorescent lighting spectra were used to calculate energy to photon-counts conversion factors.

  20. Coordination polymers of Fe(iii) and Al(iii) ions with TCA ligand: distinctive fluorescence, CO2 uptake, redox-activity and oxygen evolution reaction.

    Science.gov (United States)

    Dhara, Barun; Sappati, Subrahmanyam; Singh, Santosh K; Kurungot, Sreekumar; Ghosh, Prasenjit; Ballav, Nirmalya

    2016-04-28

    Fe and Al belong to different groups in the periodic table, one from the p-block and the other from the d-block. In spite of their different groups, they have the similarity of exhibiting a stable 3+ oxidation state. Here we have prepared Fe(iii) and Al(iii) based coordination polymers in the form of metal-organic gels with the 4,4',4''-tricarboxyltriphenylamine (TCA) ligand, namely Fe-TCA and Al-TCA, and evaluated some important physicochemical properties. Specifically, the electrical conductivity, redox-activity, porosity, and electrocatalytic activity (oxygen evolution reaction) of the Fe-TCA system were noted to be remarkably higher than those of the Al-TCA system. As for the photophysical properties, almost complete quenching of the fluorescence originating from TCA was observed in case of the Fe-TCA system, whereas for the Al-TCA system a significant retention of fluorescence with red-shifted emission was observed. Quantum mechanical calculations based on density functional theory (DFT) were performed to unravel the origin of such discriminative behaviour of these coordination polymer systems.

  1. Fe(III) hydroxide nucleation and growth on quartz in the presence of Cu(II), Pb(II), and Cr(III): metal hydrolysis and adsorption.

    Science.gov (United States)

    Dai, Chong; Hu, Yandi

    2015-01-06

    Fe(III) hydroxide nanoparticles are an essential carrier for aqueous heavy metals. Particularly, iron hydroxide precipitation on mineral surfaces can immobilize aqueous heavy metals. Here, we used grazing-incidence small-angle X-ray scattering (GISAXS) to quantify nucleation and growth of iron hydroxide on quartz in 0.1 mM Fe(NO3)3 solution in the presence of Na(+), Cu(2+), Pb(2+), or Cr(3+) at pH = 3.7 ± 0.1. In 30 min, the average radii of gyration (R(g)) of particles on quartz grew from around 2 to 6 nm in the presence of Na(+) and Cu(2+). Interestingly, the particle sizes remained 3.3 ± 0.3 nm in the presence of Pb(2+), and few particles formed in the presence of Cr(3+). Quartz crystal microbalance dissipation (QCM-D) measurements showed that only Cr(3+) adsorbed onto quartz, while Cu(2+) and Pb(2+) did not. Cr(3+) adsorption changed the surface charge of quartz from negative to positive, thus inhibiting the precipitation of positively charged iron hydroxide on quartz. Masses and compositions of the precipitates were also quantified. This study provided new insights on interactions among quartz, iron hydroxide, and metal ions. Such information is helpful not only for environmental remediation but also for the doping design of iron oxide catalysts.

  2. Comparative adsorption of Fe(III) and Cd(II) ions on glutaraldehyde crosslinked chitosan–coated cristobalite

    OpenAIRE

    Rahmi; Fathurrahmi; Irwansyah; Arie Purnaratrie

    2015-01-01

    In this study, chitosan was crosslinked with glutaraldehyde and coated on the surface of cristobalite through a dip and phase inversion process. The adsorbent was used in batch experiments to evaluate the adsorption of Fe(III) and Cd(II) ions. A maximum adsorption capacity was observed at a glutaraldehyde concentration in sorbent preparation of 1% (w/w). The equilibrium adsorption quantity was determined to be a function of the solution pH, initial concentration and agitation period. Langmuir...

  3. Biochar-Facilitated Reduction of Crystalline Fe(III) in Hematite

    Science.gov (United States)

    Xu, S.; Yang, Y.; Roden, E. E.; Tang, Y.; Huang, R.; Adhikari, D.

    2015-12-01

    Pyrogenic organic matter is a significant component of soil organic matter, the transformation of which may play a crucial role in the coupled redox cycles of carbon and iron. However, scant information is available for the role of pyrogenic carbon in the redox cycle of iron. Herein, we studied the influences of wheat straw-derived biochar on the microbial reduction of hematite by Shewanella oneidensis MR-1. In the presence of 10 mg/L biochar, microbial reduction of hematite was substantially accelerated by 41% to 142%. Reduction of hematite was enhanced to similar degrees by aqueous biochar with the concentration of 1-3 mg C/L. Importance of the aqueous biochar was also supported by the response of enhancement of Fe reduction to the dose of biochar particles, closely linked to the change in aqueous biochar concentration rather than the amount of total biochar particles. Microbiologically pre-reduced biochar reduced hematite abiotically, demonstrating the electron shuttling capacity of aqueous biochar for hematite reduction. On the other side, biochar particles sorbed Fe(II) and consequently decreased the accumulation of Fe(II) in solution to facilitate the reduction of hematite further. We reported for the first time the biochar-facilitated microbial reduction of crystalline Fe(III), through electron shuttling processes mediated by aqueous biochar and complexation of Fe(II) by biochar particles. Such impacted redox cycles of Fe would be important for the soil environment with relatively high content of indigenous pyrogenic carbon or substantial application of biochar.

  4. A simple small size and low cost sensor based on surface plasmon resonance for selective detection of Fe(III).

    Science.gov (United States)

    Cennamo, Nunzio; Alberti, Giancarla; Pesavento, Maria; D'Agostino, Girolamo; Quattrini, Federico; Biesuz, Raffaela; Zeni, Luigi

    2014-03-07

    A simple, small size, and low cost sensor based on a Deferoxamine Self Assembled Monolayer (DFO-SAM) and Surface Plasmon Resonance (SPR) transduction, in connection with a Plastic Optical Fiber (POF), has been developed for the selective detection of Fe(III). DFO-SAM sensors based on appropriate electrochemical techniques can be frequently found in the scientific literature. In this work, we present the first example of a DFO-SAM sensor based on SPR in an optical fiber. The SPR sensing platform was realized by removing the cladding of a plastic optical fiber along half the circumference, spin coating a buffer of Microposit S1813 photoresist on the exposed core, and finally sputtering a thin gold film. The hydroxamate siderophore deferoxamine (DFO), having high binding affinity for Fe(III), is then used in its immobilized form, as self-assembled monolayer on the gold layer surface of the POF sensor. The results showed that the DFO-SAM-POF-sensor was able to sense the formation of the Fe(III)/DFO complex in the range of concentrations between 1 μm and 50 μm with a linearity range from 0 to 30 μm of Fe(III). The selectivity of the sensor was also proved by interference tests.

  5. A Simple Small Size and Low Cost Sensor Based on Surface Plasmon Resonance for Selective Detection of Fe(III

    Directory of Open Access Journals (Sweden)

    Nunzio Cennamo

    2014-03-01

    Full Text Available A simple, small size, and low cost sensor based on a Deferoxamine Self Assembled Monolayer (DFO-SAM and Surface Plasmon Resonance (SPR transduction, in connection with a Plastic Optical Fiber (POF, has been developed for the selective detection of Fe(III. DFO-SAM sensors based on appropriate electrochemical techniques can be frequently found in the scientific literature. In this work, we present the first example of a DFO-SAM sensor based on SPR in an optical fiber. The SPR sensing platform was realized by removing the cladding of a plastic optical fiber along half the circumference, spin coating a buffer of Microposit S1813 photoresist on the exposed core, and finally sputtering a thin gold film. The hydroxamate siderophore deferoxamine (DFO, having high binding affinity for Fe(III, is then used in its immobilized form, as self-assembled monolayer on the gold layer surface of the POF sensor. The results showed that the DFO-SAM-POF-sensor was able to sense the formation of the Fe(III/DFO complex in the range of concentrations between 1 μm and 50 μm with a linearity range from 0 to 30 μm of Fe(III. The selectivity of the sensor was also proved by interference tests.

  6. Methemoglobinemia caused by 8-aminoquinoline drugs: DFT calculations suggest an analogy to H4B's role in nitric oxide synthase

    Science.gov (United States)

    We suggest a possible mechanism of how 8-aminoquinolines (8-AQ's) cause hemotoxicity by oxidizing hemoglobin to methemoglobin. In our DFT calculations, we found that 5-hydroxyprimaquine is able to donate an electron to O2 to facilitate its conversion to H2O2. Meanwhile, Fe(II) is oxidized to Fe(III)...

  7. Influence of Reactive Transport on the Reduction of U(VI) in the Presence of Fe(III) and Nitrate: Implications for U(VI) Immobilization by Bioremediation / Biobarriers- Final Report

    Energy Technology Data Exchange (ETDEWEB)

    B.D. Wood

    2007-01-01

    Subsurface contamination by metals and radionuclides represent some of the most challenging remediation problems confronting the Department of Energy (DOE) complex. In situ remediation of these contaminants by dissimilatory metal reducing bacteria (DMRB) has been proposed as a potential cost effective remediation strategy. The primary focus of this research is to determine the mechanisms by which the fluxes of electron acceptors, electron donors, and other species can be controlled to maximize the transfer of reductive equivalents to the aqueous and solid phases. The proposed research is unique in the NABIR portfolio in that it focuses on (i) the role of flow and transport in the initiation of biostimulation and the successful sequestration of metals and radionuclides [specifically U(VI)], (ii) the subsequent reductive capacity and stability of the reduced sediments produced by the biostimulation process, and (iii) the potential for altering the growth of biomass in the subsurface by the addition of specific metabolic uncoupling compounds. A scientifically-based understanding of these phenomena are critical to the ability to design successful bioremediation schemes. The laboratory research will employ Shewanella putrefaciens (CN32), a facultative DMRB that can use Fe(III) oxides as a terminal electron acceptor. Sediment-packed columns will be inoculated with this organism, and the reduction of U(VI) by the DMRB will be stimulated by the addition of a carbon and energy source in the presence of Fe(III). Separate column experiments will be conducted to independently examine: (1) the importance of the abiotic reduction of U(VI) by biogenic Fe(II); (2) the influence of the transport process on Fe(III) reduction and U(VI) immobilization, with emphasis on methods for controlling the fluxes of aqueous species to maximize uranium reduction; (3) the reductive capacity of biologically-reduced sediments (with respect to re-oxidation by convective fluxes of O2 and NO3-) and

  8. [Effect of Ferric Iron on Nitrogen Immigration and Transformation and Nitrous Oxide Emission During Simultaneous Nitrification Denitrification Process].

    Science.gov (United States)

    Li, Hao; Yan, Yu-jie; Xie, Hui-jun; Jia, Wen-lin; Hu, Zhen; Zhang, Jian

    2015-04-01

    Effect of Fe(III) concentration on nitrogen immigration and transformation and nitrous oxide emission during the simultaneous nitrification denitrification (SND) process was investigated. Higher nitrogen removal efficiency was obtained when the Fe(III) concentration was 20 mg x L(-1), while lower nitrogen removal efficiency was observed when the Fe (III) concentration turned to 60 mg x L(-1). In addition, higher Fe(III) concentration significantly enhanced the N2O emission, as well as the N2O conversion ratio. This was mainly attributed to (1) the high concentration of nitrite accumulation during the oxic stage, which was caused by lower dehydrogenase activity at high Fe(III) concentration; (2) less PHB production during the anoxic stage, which would led to shortage of carbon source for denitrification in the following oxic stage. The results also showed that Fe(III) addition could improve the TP removal efficiency. TP removal efficiency increased with increasing Fe(III) concentration, mainly because of extra chemical reaction.

  9. Autotrophic Nitrogen Removal in a Membrane-Aerated Biofilm Reactor Under Continuous Aeration: A Demonstration

    DEFF Research Database (Denmark)

    Gilmore, Kevin R.; Terada, Akihiko; Smets, Barth F.

    2013-01-01

    This work describes the successful coupling of partial nitrification (nitritation) and anaerobic ammonium oxidation in a membrane-aerated biofilm reactor (MABR) with continuous aeration. Controlling the relative surface loadings of oxygen versus ammonium prevented complete nitrite oxidation and a...

  10. Drinking Water Denitrification using Autotrophic Denitrifying Bacteria in a Fluidized Bed Bioreactor 

    Directory of Open Access Journals (Sweden)

    Abdolmotaleb Seid-mohammadi

    2013-02-01

    Full Text Available Background and Objectives: Contamination of drinking water sources with nitrate may cause adverse effects on human health. Due to operational and maintenance problems of physicochemical nitrate removal processes, using biological denitrification processes have been performed. The aim of this study is to evaluate nitrate removal efficiency from drinking water using autotrophic denitrifying bacteria immobilized on sulfur impregnated activated carbon in a fluidized bed bioreactor. Materials and Methods: After impregnating activated carbon by sulfur as a microorganism carriers and enrichment and inoculation of denitrifying bacteria, a laboratory-scale fluidized bed bioreactor was operated. Nitrate removal efficiency, nitrite, turbidity, hardness and TOC in the effluent were examined during the whole experiment under various conditions including constant influent nitrate concentration as 90 mg NO3--N/l corresponding to different HRT ranging from 5.53 to 1.5 hr. Results: We found that  the denitrification rates was depended on the hydraulic retention time and the nitrate removal efficiency was up to 98%  and nitrite concentration was lower than 1mg/l at optimum HRT=2.4 hr respectively. Moreover, there was no difference in hardness between influent and effluent due to supplying sodium bicarbonate as carbon source for denitrifying bacteria.  However pH, TOC, hardness, and turbidity of the effluent met the W.H.O guidelines for drinking water.  Conclusion: This study demonstrated that an innovative carrier as sulfur impregnated activated carbon could be used as both the biofilm carrier and energy source for treating nitrate contaminated drinking water in the lab-scale fluidized bed bioreactor.

  11. Partitioning Longleaf Pine Soil Respiration into Its Heterotrophic and Autotrophic Components through Root Exclusion

    Directory of Open Access Journals (Sweden)

    Althea A. ArchMiller

    2016-02-01

    Full Text Available Rapid and accurate estimations of the heterotrophic and autotrophic components of total soil respiration (Rs are important for calculating forest carbon budgets and for understanding carbon dynamics associated with natural and management-related disturbances. The objective of this study was to use deep (60 cm root exclusion tubes and paired control (i.e., no root exclusion collars to estimate heterotrophic respiration (Rh and Rs, respectively, in three 26-year-old longleaf pine (Pinus palustris Mill. stands in western Georgia. Root biomass was measured in root exclusion tubes and control collars after 102–104 days of incubation and fine root biomass loss from root exclusion was used to quantify root decay. Mean Rs from control collars was 3.3 micromol•CO2•m−2•s−1. Root exclusion tubes decreased Rs, providing an estimate of Rh. Mean Rh was 2.7 micromol•CO2•m−2•s−1 when uncorrected by pretreatment variation, root decay, or soil moisture compared to 2.1 micromol•CO2•m−2•s−1 when Rh was corrected for root decay. The corresponding ratio of Rh to Rs ranged from 66% to 82%, depending on the estimation method. This study provides an estimate of Rh in longleaf pine forests, and demonstrates the potential for deep root exclusion tubes to provide relatively rapid assessments (i.e., ~40 days post-treatment of Rh in similar forests. The range in Rh to Rs is comparable to other reports for similar temperate coniferous ecosystems.

  12. Exploratory Research - Using Volatile Organic Compounds to Separate Heterotrophic and Autotrophic Forest Soil Respiration

    Energy Technology Data Exchange (ETDEWEB)

    Roberts, Scott D [Mississippi State Univ., Mississippi State, MS (United States)

    2015-02-09

    The initial focus of this project was to develop a method to partition soil respiration into its components (autotrophic, heterotrophic etc.) using the fingerprint of volatile organic compounds (VOCs) from soils. We were able to identify 63 different VOCs in our study; however, due to technical difficulties we were unable to take reliable measurements in order to test our hypotheses and develop this method. In the end, we changed the objectives of the project. Our new objectives were to characterize the effects of species and soil moisture regime on the composition of soil organic matter. We utilized the soils from the greenhouse experiment we had established for the soil VOC study and determined the lignin biomarker profiles of each of the treatments. We found that moisture had a significant effect on the carbon content of the soils with the low moisture treatments having higher carbon content than the high moisture treatments. We found that the relative yield of syringyl phenols (SP), ligin (Lig), and substituted fatty acids (SFA) were elevated in deciduous planted pots and reduced in conifer planted pots relative to plant-free treatments. Our results suggest nuttall oak preserved lignin and SFA, while loblolly pine lost lignin and SFA similarly to the plant free treatments. Since we did not find that the carbon concentrations of the soils were different between the species, nuttall oak probably replaced more native soil carbon than loblolly pine. This suggests that relative to loblolly pine, nuttall oak is a priming species. Since priming may impact soil carbon pools more than temperature or moisture, determining which species are priming species may facilitate an understanding of the interaction that land use and climate change may have on soil carbon pools.

  13. Anaerobic, Nitrate-Dependent Fe(II) Oxidation Under Advective Flow

    Science.gov (United States)

    Weber, K. A.; Coates, J. D.

    2005-12-01

    Microbially-catalyzed nitrate-dependent Fe(II) oxidation has been identified as a ubiquitous biogeochemical process contributing to anaerobic iron redox cycling in sedimentary environments. Most probable number enumeration revealed nitrate-dependent Fe(II) oxidizing microbial communities in groundwater and subsurface sediments in the order of 0 - 2.04 x 103 cells mL-1 and 2.39 x 102 - 1.17 x 103 cells (g wet sediment)-1, respectively. The efficacy of nitrate-dependent Fe(II) oxidation under advective flow was evaluated in a meso-scale column reactor packed with sterile low iron sand amended with subsurface sediments collected from the NABIR FRC background field site (10% mass/mass). Continuous flow of minimal medium mimicked the natural groundwater. Periodic FeCl2 and nitrate injections over a period of 49 days resulted in the retention of 95% of the iron (290 mmol). Extraction of solid-phase Fe revealed a net increase in Fe(III) of 160 mmol above background Fe(III) content indicating that 55% of the injected Fe(II) was oxidized. Differential solubility analysis of 0.5M HCl-extractable Fe and 3M HCl-extractable Fe indicated that the oxidation product was crystalline in nature as only 20% was soluble in 0.5M HCl. This formation of crystalline biogenic Fe(III) oxides is consistent with previous studies. Periodic injections of nitrate and acetate did not result in significant changes in Fe(II) or Fe(III) throughout a control column. Together these results demonstrate that native subsurface sediments harbor microbial communities capable of nitrate-dependent Fe(II) oxidation under advective flow. The biogenic formation of reactive Fe(III) oxide minerals capable of immobilizing heavy metals and radionuclides presents a plausible bioremediative strategy for contaminated subsurface environments.

  14. An Autotrophic Origin for the Coded Amino Acids is Concordant with the Coevolution Theory of the Genetic Code.

    Science.gov (United States)

    Di Giulio, Massimo

    2016-10-01

    The coevolution theory of the origin of the genetic code maintains that the biosynthetic relationships between amino acids co-evolved with the genetic code organization. In other words, the metabolism of amino acids co-evolved with the organization of the genetic code because the biosynthetic pathways of amino acids occurred on tRNA-like molecules. Thus, a heterotrophic origin of amino acids-also only of those involved in the early phase of the structuring of the genetic code-would seem to contradict the main postulate of the coevolution theory. As a matter of fact, this origin not being linked to the metabolism of amino acids in any way-being taken from a physical setting-would seem to remove the possibility that this metabolism had instead heavily contributed to the structuring of the genetic code. Therefore, I have analyzed the structure of the genetic code and mechanisms that brought to its structuring for understanding if the coevolution theory is compatible with autotrophic or heterotrophic conditions. One of the arguments was that an autotrophic origin of amino acids would have the advantage to be able to directly link their metabolism to the structure of the genetic code if-as hypothesized by the coevolution theory-the biosyntheses of amino acids occurred on tRNA-like molecules. Simultaneously, a heterotrophic origin would not have been able to link the metabolism of amino acids to the structure of the genetic code for the absence of a precise determinism of allocation of amino acids, that is to say of a clear mechanism-linked to tRNA-like molecules, for example-that would have determined the specific pattern observed in the genetic code of the biosynthetic relationships between amino acids. The conclusion is that an autotrophic origin of coded amino acids would seem to be the condition under which the genetic code originated.

  15. Soil moisture sensitivity of autotrophic and heterotrophic forest floor respiration in boreal xeric pine and mesic spruce forests

    Science.gov (United States)

    Ťupek, Boris; Launiainen, Samuli; Peltoniemi, Mikko; Heikkinen, Jukka; Lehtonen, Aleksi

    2016-04-01

    Litter decomposition rates of the most process based soil carbon models affected by environmental conditions are linked with soil heterotrophic CO2 emissions and serve for estimating soil carbon sequestration; thus due to the mass balance equation the variation in measured litter inputs and measured heterotrophic soil CO2 effluxes should indicate soil carbon stock changes, needed by soil carbon management for mitigation of anthropogenic CO2 emissions, if sensitivity functions of the applied model suit to the environmental conditions e.g. soil temperature and moisture. We evaluated the response forms of autotrophic and heterotrophic forest floor respiration to soil temperature and moisture in four boreal forest sites of the International Cooperative Programme on Assessment and Monitoring of Air Pollution Effects on Forests (ICP Forests) by a soil trenching experiment during year 2015 in southern Finland. As expected both autotrophic and heterotrophic forest floor respiration components were primarily controlled by soil temperature and exponential regression models generally explained more than 90% of the variance. Soil moisture regression models on average explained less than 10% of the variance and the response forms varied between Gaussian for the autotrophic forest floor respiration component and linear for the heterotrophic forest floor respiration component. Although the percentage of explained variance of soil heterotrophic respiration by the soil moisture was small, the observed reduction of CO2 emissions with higher moisture levels suggested that soil moisture response of soil carbon models not accounting for the reduction due to excessive moisture should be re-evaluated in order to estimate right levels of soil carbon stock changes. Our further study will include evaluation of process based soil carbon models by the annual heterotrophic respiration and soil carbon stocks.

  16. Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions

    Directory of Open Access Journals (Sweden)

    Jessica K Cole

    2014-04-01

    Full Text Available Microbial autotroph-heterotroph interactions influence biogeochemical cycles on a global scale, but the diversity and complexity of natural systems and their intractability to in situ manipulation make it challenging to elucidate the principles governing these interactions. The study of assembling phototrophic biofilm communities provides a robust means to identify such interactions and evaluate their contributions to the recruitment and maintenance of phylogenetic and functional diversity over time. To examine primary succession in phototrophic communities, we isolated two unicyanobacterial consortia from the microbial mat in Hot Lake, Washington, characterizing the membership and metabolic function of each consortium. We then analyzed the spatial structures and quantified the community compositions of their assembling biofilms. The consortia retained the same suite of heterotrophic species, identified as abundant members of the mat and assigned to Alphaproteobacteria, Gammaproteobacteria, and Bacteroidetes. Autotroph growth rates dominated early in assembly, yielding to increasing heterotroph growth rates late in succession. The two consortia exhibited similar assembly patterns, with increasing relative abundances of members from Bacteroidetes and Alphaproteobacteria concurrent with decreasing relative abundances of those from Gammaproteobacteria. Despite these similarities at higher taxonomic levels, the relative abundances of individual heterotrophic species were substantially different in the developing consortial biofilms. This suggests that, although similar niches are created by the cyanobacterial metabolisms, the resulting webs of autotroph-heterotroph and heterotroph-heterotroph interactions are specific to each primary producer. The relative simplicity and tractability of the Hot Lake unicyanobacterial consortia make them useful model systems for deciphering interspecies interactions and assembly principles relevant to natural

  17. Fractionation of Fe isotopes during Fe(II) oxidation by a marine photoferrotroph is controlled by the formation of organic Fe-complexes and colloidal Fe fractions

    Science.gov (United States)

    Swanner, Elizabeth D.; Wu, Wenfang; Schoenberg, Ronny; Byrne, James; Michel, F. Marc; Pan, Yongxin; Kappler, Andreas

    2015-09-01

    Much interest exists in finding mineralogical, organic, morphological, or isotopic biosignatures for Fe(II)-oxidizing bacteria (FeOB) that are retained in Fe-rich sediments, which could indicate the activity of these organisms in Fe-rich seawater, more common in the Precambrian Era. To date, the effort to establish a clear Fe isotopic signature in Fe minerals produced by Fe(II)-oxidizing metabolisms has been thwarted by the large kinetic fractionation incurred as freshly oxidized aqueous Fe(III) rapidly precipitates as Fe(III) (oxyhydr)oxide minerals at near neutral pH. The Fe(III) (oxyhydr)oxide minerals resulting from abiotic Fe(II) oxidation are isotopically heavy compared to the Fe(II) precursor and are not clearly distinguishable from minerals formed by FeOB isotopically. However, in marine hydrothermal systems and Fe(II)-rich springs the minerals formed are often isotopically lighter than expected considering the fraction of Fe(II) that has been oxidized and experimentally-determined fractionation factors. We measured the Fe isotopic composition of aqueous Fe (Feaq) and the final Fe mineral (Feppt) produced in batch experiment using the marine Fe(II)-oxidizing phototroph Rhodovulum iodosum. The δ56Feaq data are best described by a kinetic fractionation model, while the evolution of δ56Feppt appears to be controlled by a separate fractionation process. We propose that soluble Fe(III), and Fe(II) and Fe(III) extracted from the Feppt may act as intermediates between Fe(II) oxidation and Fe(III) precipitation. Based on 57Fe Mössbauer spectroscopy, extended X-ray absorption fine structure (EXAFS) spectroscopy, and X-ray total scattering, we suggests these Fe phases, collectively Fe(II/III)interm, may consist of organic-ligand bound, sorbed, and/or colloidal Fe(II) and Fe(III) mineral phases that are isotopically lighter than the final Fe(III) mineral product. Similar intermediate phases, formed in response to organic carbon produced by FeOB and inorganic

  18. Reaction Mechanisms of Metals with Hydrogen Sulfide and Thiols in Model Wine. Part 2: Iron- and Copper-Catalyzed Oxidation.

    Science.gov (United States)

    Kreitman, Gal Y; Danilewicz, John C; Jeffery, David W; Elias, Ryan J

    2016-05-25

    Sulfidic off-odors arising during wine production are frequently removed by Cu(II) fining. In part 1 of this study ( 10.1021/acs.jafc.6b00641 ), the reaction of H2S and thiols with Cu(II) was examined; however, the interaction of iron and copper is also known to play an important synergistic role in mediating non-enzymatic wine oxidation. The interaction of these two metals in the oxidation of H2S and thiols (cysteine, 3-sulfanylhexan-1-ol, and 6-sulfanylhexan-1-ol) was therefore examined under wine-like conditions. H2S and thiols (300 μM) were reacted with Fe(III) (100 or 200 μM) alone and in combination with Cu(II) (25 or 50 μM), and concentrations of H2S and thiols, oxygen, and acetaldehyde were monitored over time. H2S and thiols were shown to be slowly oxidized in the presence of Fe(III) alone and were not bound to Fe(III) under model wine conditions. However, Cu(II) added to model wine containing Fe(III) was quickly reduced by H2S and thiols to form Cu(I) complexes, which then rapidly reduced Fe(III) to Fe(II). Oxidation of Fe(II) in the presence of oxygen regenerated Fe(III) and completed the iron redox cycle. In addition, sulfur-derived oxidation products were observed, and the formation of organic polysulfanes was demonstrated.

  19. Synthesis and Structural Studies of Cr(III, Mn(II and Fe(III Complexes of N(2-Benzimidazolylacetylacetohydrazone

    Directory of Open Access Journals (Sweden)

    G. H. Anuradha

    2011-01-01

    Full Text Available The ligand N(2-benzimidazolylacetylacetohydrazone (BAAH have been synthesized and characterized. Coordination complexes of Cr(III, Mn(II and Fe(III have been synthesized with the ligand BAAH. These complexes were characterized on the basis of analytical, conductance, thermal, magnetic data and infrared and electronic spectral data. The ligand BAAH is behaving as a neutral tridentate NNO donar employing two azomethine nitrogens (ring and side chain and carbonyl oxygen. The ligand and it's metal complexes were tested for anti microbial activity on the gram positive S. Aureus, E. coli and Proteus.

  20. Comparative adsorption of Fe(III and Cd(II ions on glutaraldehyde crosslinked chitosan–coated cristobalite

    Directory of Open Access Journals (Sweden)

    Rahmi

    2015-12-01

    Full Text Available In this study, chitosan was crosslinked with glutaraldehyde and coated on the surface of cristobalite through a dip and phase inversion process. The adsorbent was used in batch experiments to evaluate the adsorption of Fe(III and Cd(II ions. A maximum adsorption capacity was observed at a glutaraldehyde concentration in sorbent preparation of 1% (w/w. The equilibrium adsorption quantity was determined to be a function of the solution pH, initial concentration and agitation period. Langmuir and Freundlich adsorption models were used to describe adsorption isotherms.

  1. Enhanced abiotic and biotic contributions to dechlorination of pentachlorophenol during Fe(III) reduction by an iron-reducing bacterium Clostridium beijerinckii Z

    Energy Technology Data Exchange (ETDEWEB)

    Xu, Yan [College of Environmental and Natural Resource Sciences, Zhejiang Provincial Key Laboratory of Subtropical Soil and Plant Nutrition, Zhejiang University, Hangzhou 310058 (China); He, Yan, E-mail: yhe2006@zju.edu.cn [College of Environmental and Natural Resource Sciences, Zhejiang Provincial Key Laboratory of Subtropical Soil and Plant Nutrition, Zhejiang University, Hangzhou 310058 (China); Feng, Xiaoli [College of Environmental and Natural Resource Sciences, Zhejiang Provincial Key Laboratory of Subtropical Soil and Plant Nutrition, Zhejiang University, Hangzhou 310058 (China); Liang, Luyi [Experiment Teaching Center for Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058 (China); Xu, Jianming, E-mail: jmxu@zju.edu.cn [College of Environmental and Natural Resource Sciences, Zhejiang Provincial Key Laboratory of Subtropical Soil and Plant Nutrition, Zhejiang University, Hangzhou 310058 (China); Brookes, Philip C.; Wu, Jianjun [College of Environmental and Natural Resource Sciences, Zhejiang Provincial Key Laboratory of Subtropical Soil and Plant Nutrition, Zhejiang University, Hangzhou 310058 (China)

    2014-03-01

    A novel Fe(III) reducing bacterium, Clostridium beijerinckii Z, was isolated from glucose amended paddy slurries, and shown to dechlorinate pentachlorophenol (PCP). Fifty percent of added PCP was removed by C. beijerinckii Z alone, which increased to 83% in the presence of both C. beijerinckii Z and ferrihydrite after 11 days of incubation. Without C. beijerinckii Z, the surface-bound Fe(II) also abiotically dechlorinated more than 40% of the added PCP. This indicated that the biotic dechlorination by C. beijerinckii Z is a dominant process causing PCP transformation through anaerobic dechlorination, and that the dechlorination rates can be accelerated by simultaneous reduction of Fe(III). A biochemical electron transfer coupling process between sorbed Fe(II) produced by C. beijerinckii Z and reductive dehalogenation is a possible mechanism. This finding increases our knowledge of the role of Fe(III) reducing genera of Clostridium in dechlorinating halogenated organic pollutants, such as PCP, in anaerobic paddy soils. - Highlights: • A novel Fe(III) reducing bacterium Clostridium beijerinckii Z was isolated and could dechlorinate pentachlorophenol. • Anaerobic transformation of PCP by C. beijerinckii Z could be accelerated by simultaneous reduction of Fe(III). • Biochemical electron transfer coupling between Fe redox cycling and reductive dechlorination was the mechanism involved. • The finding increases our knowledge of Clostridium sp. regarding their multiple functions for dechlorinating pollutants.

  2. Autotrophic fixation of geogenic CO2 by microorganisms contributes to soil organic matter formation and alters isotope signatures in a wetland mofette

    DEFF Research Database (Denmark)

    Beulig, Felix

    2015-01-01

    To quantify the contribution of autotrophic microorganisms to organic matter (OM) formation in soils, we investigated natural CO2 vents (mofettes) situated in a wetland in northwest Bohemia (Czech Republic). Mofette soils had higher soil organic matter (SOM) concentrations than reference soils due...... of radiocarbon and enriched in 13C compared to atmospheric CO2. Together, these isotopic signals allow us to distinguish C fixed by plants from C fixed by autotrophic microorganisms using their differences in 13C discrimination. We can then estimate that up to 27 % of soil organic matter in the 0–10 cm layer...... (qPCR) and by acetogenic and methanogenic microorganisms, shown present in the mofettes by previous studies. Combined Δ14C and δ13C isotope mass balances indicated that microbially derived carbon accounted for 8–27 % of bulk SOM in this soil layer. The findings imply that autotrophic microorganisms...

  3. Thawing permafrost increases old soil and autotrophic respiration in tundra: partitioning ecosystem respiration using δ(13) C and ∆(14) C.

    Science.gov (United States)

    Hicks Pries, Caitlin E; Schuur, Edward A G; Crummer, Kathryn G

    2013-02-01

    Ecosystem respiration (Reco ) is one of the largest terrestrial carbon (C) fluxes. The effect of climate change on Reco depends on the responses of its autotrophic and heterotrophic components. How autotrophic and heterotrophic respiration sources respond to climate change is especially important in ecosystems underlain by permafrost. Permafrost ecosystems contain vast stores of soil C (1672 Pg) and are located in northern latitudes where climate change is accelerated. Warming will cause a positive feedback to climate change if heterotrophic respiration increases without corresponding increases in primary production. We quantified the response of autotrophic and heterotrophic respiration to permafrost thaw across the 2008 and 2009 growing seasons. We partitioned Reco using Δ(14) C and δ(13) C into four sources-two autotrophic (above - and belowground plant structures) and two heterotrophic (young and old soil). We sampled the Δ(14) C and δ(13) C of sources using incubations and the Δ(14) C and δ(13) C of Reco using field measurements. We then used a Bayesian mixing model to solve for the most likely contributions of each source to Reco . Autotrophic respiration ranged from 40 to 70% of Reco and was greatest at the height of the growing season. Old soil heterotrophic respiration ranged from 6 to 18% of Reco and was greatest where permafrost thaw was deepest. Overall, growing season fluxes of autotrophic and old soil heterotrophic respiration increased as permafrost thaw deepened. Areas with greater thaw also had the greatest primary production. Warming in permafrost ecosystems therefore leads to increased plant and old soil respiration that is initially compensated by increased net primary productivity. However, barring large shifts in plant community composition, future increases in old soil respiration will likely outpace productivity, resulting in a positive feedback to climate change.

  4. Magnetic, high-field EPR studies and catalytic activity of Schiff base tetranuclear CuII2FeIII2 complexes obtained by direct synthesis.

    Science.gov (United States)

    Nesterova, Oksana V; Chygorin, Eduard N; Kokozay, Vladimir N; Bon, Volodymyr V; Omelchenko, Irina V; Shishkin, Oleg V; Titiš, Ján; Boča, Roman; Pombeiro, Armando J L; Ozarowski, Andrew

    2013-12-28

    Two novel heterometallic complexes [Cu2Fe2(HL(1))2(H2L(1))2]·10DMSO (1) and [Cu2Fe2(HL(2))2(H2L(2))2]·2DMF (2) have been prepared using the open-air reaction of copper powder, iron(II) chloride and DMSO (1) or DMF (2) solutions of the polydentate Schiff base (H4L(1), 1; H4L(2), 2) formed in situ from salicylaldehyde (1) or 5-bromo-salicylaldehyde (2) and tris(hydroxymethyl)aminomethane. Crystallographic analysis revealed that both compounds are based on the centrosymmetric tetranuclear core {Cu(II)2Fe(III)2(μ-O)6} where metal centres are joined by μ-O bridges from the deprotonated ligands forming a nonlinear chain-like arrangement. Variable-temperature (1.8-300 K) magnetic susceptibility measurements of 1 and 2 showed a decrease of the effective magnetic moment value at low temperature, indicative of antiferromagnetic coupling (JCu-Fe/hc = -10.2 cm(-1), JFe-Fe/hc = -10.5 cm(-1) in 1, JCu-Fe/hc = -10.5 cm(-1), JFe-Fe/hc = -8.93 cm(-1) in 2) between the magnetic centres in both compounds. They reveal an exceptionally high catalytic activity in the oxidation of cyclohexane with hydrogen peroxide under mild conditions, with the best observed yield/TON combined values of 36%/596 and 44%/1.1 × 10(3) for 1 and 2, respectively.

  5. Characterization of the start-up period of single-step autotrophic nitrogen removal in a sequencing batch reactor

    Institute of Scientific and Technical Information of China (English)

    GUO Jin-song; QIN Yu; FANG Fang; YANG Guo-hong

    2008-01-01

    The characteristics of the start-up period of single-step autotrophic nitrogen removal process were investigated. The autotrophic nitrogen removal process used a sequencing batch reactor to treat wastewater of medium to low ammonia-nitrogen concentration, with dissolved oxygen (DO), hydraulic retention time (HRT) and temperature controlled. The experimental conditions were temperature at (30(2) (C, ammonia concentration of (60 to 120) mg/L, DO of (0.8 to 1.0) mg/L, pH from 7.8 to 8.5 and HRT of 24 h. The rates of nitrification and nitrogen removal turn out to be 77% and 40%, respectively, after a start up period going through three stages divided according to nitrite accumulation: sludge domestication, nitrifying bacteria selection and sludge adaptation. It is demonstrated that dissolved oxygen is critical to nitrite accumulation and elastic YJZH soft compound packing is superior to polyhedral hollow balls in helping the bacteria adhere to the membrane.

  6. Metabolic potential of microbial mats and microbialites: Autotrophic capabilities described by an in silico stoichiometric approach from shared genomic resources.

    Science.gov (United States)

    Cerqueda-García, Daniel; Falcón, Luisa I

    2016-08-01

    Microbialites and microbial mats are complex communities with high phylogenetic diversity. These communities are mostly composed of bacteria and archaea, which are the earliest living forms on Earth and relevant to biogeochemical evolution. In this study, we identified the shared metabolic pathways for uptake of inorganic C and N in microbial mats and microbialites based on metagenomic data sets. An in silico analysis for autotrophic pathways was used to trace the paths of C and N to the system, following an elementary flux modes (EFM) approach, resulting in a stoichiometric model. The fragility was analyzed by the minimal cut sets method. We found four relevant pathways for the incorporation of CO2 (Calvin cycle, reverse tricarboxylic acid cycle, reductive acetyl-CoA pathway, and dicarboxylate/4-hydroxybutyrate cycle), some of them present only in archaea, while nitrogen fixation was the most important source of N to the system. The metabolic potential to incorporate nitrate to biomass was also relevant. The fragility of the network was low, suggesting a high redundancy of the autotrophic pathways due to their broad metabolic diversity, and highlighting the relevance of reducing power source. This analysis suggests that microbial mats and microbialites are "metabolic pumps" for the incorporation of inorganic gases and formation of organic matter.

  7. Pilot and full scale applications of sulfur-based autotrophic denitrification process for nitrate removal from activated sludge process effluent.

    Science.gov (United States)

    Sahinkaya, Erkan; Kilic, Adem; Duygulu, Bahadir

    2014-09-01

    Sulfur-based autotrophic denitrification of nitrified activated sludge process effluent was studied in pilot and full scale column bioreactors. Three identical pilot scale column bioreactors packed with varying sulfur/lime-stone ratios (1/1-3/1) were setup in a local wastewater treatment plant and the performances were compared under varying loading conditions for long-term operation. Complete denitrification was obtained in all pilot bioreactors even at nitrate loading of 10 mg NO3(-)-N/(L.h). When the temperature decreased to 10 °C during the winter time at loading of 18 mg NO3(-)-N/(L.h), denitrification efficiency decreased to 60-70% and the bioreactor with S/L ratio of 1/1 gave slightly better performance. A full scale sulfur-based autotrophic denitrification process with a S/L ratio of 1/1 was set up for the denitrification of an activated sludge process effluent with a flow rate of 40 m(3)/d. Almost complete denitrification was attained with a nitrate loading rate of 6.25 mg NO3(-)-N/(L.h).

  8. Phototrophic Biofilm Assembly in Microbial-Mat-Derived Unicyanobacterial Consortia: Model Systems for the Study of Autotroph-Heterotroph Interactions

    Energy Technology Data Exchange (ETDEWEB)

    Cole, Jessica K.; Hutchison, Janine R.; Renslow, Ryan S.; Kim, Young-Mo; Chrisler, William B.; Engelmann, Heather E.; Dohnalkova, Alice; Hu, Dehong; Metz, Thomas O.; Fredrickson, Jim K.; Lindemann, Stephen R.

    2014-04-07

    Though microbial autotroph-heterotroph interactions influence biogeochemical cycles on a global scale, the diversity and complexity of natural systems and their intractability to in situ environmental manipulation makes elucidation of the principles governing these interactions challenging. Examination of primary succession during phototrophic biofilm assembly provides a robust means by which to elucidate the dynamics of such interactions and determine their influence upon recruitment and maintenance of phylogenetic and functional diversity in microbial communities. We isolated and characterized two unicyanobacterial consortia from the Hot Lake phototrophic mat, quantifying the structural and community composition of their assembling biofilms. The same heterotrophs were retained in both consortia and included members of Alphaproteobacteria, Gammaproteobacteria, and Bacteroidetes, taxa frequently reported as consorts of microbial photoautotrophs. Cyanobacteria led biofilm assembly, eventually giving way to a late heterotrophic bloom. The consortial biofilms exhibited similar patterns of assembly, with the relative abundances of members of Bacteroidetes and Alphaproteobacteria increasing and members of Gammaproteobacteria decreasing as colonization progressed. Despite similar trends in assembly at higher taxa, the consortia exhibited substantial differences in community structure at the species level. These similar patterns of assembly with divergent community structures suggest that, while similar niches are created by the metabolism of the cyanobacteria, the resultant webs of autotroph-heterotroph and heterotroph-heterotroph interactions driving metabolic exchange are specific to each primary producer. Altogether, our data support these Hot Lake unicyanobacterial consortia as generalizable model systems whose simplicity and tractability permit the deciphering of community assembly principles relevant to natural microbial communities.

  9. The autotrophic contribution to soil respiration in a northern temperate deciduous forest and its response to stand disturbance.

    Science.gov (United States)

    Levy-Varon, Jennifer H; Schuster, William S F; Griffin, Kevin L

    2012-05-01

    The goal of this study was to evaluate the contribution of oak trees (Quercus spp.) and their associated mycorrhizal fungi to total community soil respiration in a deciduous forest (Black Rock Forest) and to explore the partitioning of autotrophic and heterotrophic respiration. Trees on twelve 75 × 75-m plots were girdled according to four treatments: girdling all the oaks on the plot (OG), girdling half of the oak trees on a plot (O50), girdling all non-oaks on a plot (NO), and a control (C). In addition, one circular plot (diameter 50 m) was created where all trees were girdled (ALL). Soil respiration was measured before and after tree girdling. A conservative estimate of the total autotrophic contribution is approximately 50%, as indicated by results on the ALL and OG plots. Rapid declines in carbon dioxide (CO(2)) flux from both the ALL and OG plots, 37 and 33%, respectively, were observed within 2 weeks following the treatment, demonstrating a fast turnover of recently fixed carbon. Responses from the NO and O50 treatments were statistically similar to the control. A non-proportional decline in respiration rates along the gradient of change in live aboveground biomass complicated partitioning of the overall rate of soil respiration and indicates that belowground carbon flux is not linearly related to aboveground disturbance. Our findings suggest that in this system there is a threshold disturbance level between 35 and 74% of live aboveground biomass loss, beyond which belowground dynamics change dramatically.

  10. [Accumulation of α-tocopherol and β-carotene in Euglena gracilis Cells under Autotrophic and Mixotrophic Culture Conditions].

    Science.gov (United States)

    Mokrosnop, V M; Polishchuk, A V; Zolotareva, E K

    2016-01-01

    The aim of the work was to find the mode of cultivation of unicellular flagellate Euglena gracilis, favorable for the simultaneous accumulation of α-tocopherol and β-carotene. Cells were grown either in photoautotrophic or photoheterotrophic conditions in the presence of 100 mM ethanol (variant Et) or 40 mM glutamate (variant Gt), or their combination (variant EtGt). The exogenous substrates significantly stimulated light-dependent growth of E. gracilis. The largest increase of biomass was recorded on the 20th day in the variant EtGt and exceeded the autotrophic control by 7 times. The content of β-carotene and chlorophyll (Chl) per cell in mixotrophic cultures exceeded the control by 2-3 and 1.6-2 times, respectively. At the same time, α-tocopherol accumulation in autotrophic cells was greater than in the cells of mixotrophic cultures by 2-7 times. Total yield of tocopherol per unit volume of culture medium, which depended not only on its intracellular content, but also on the amount of accumulated biomass was highest in EtGt variant. A correlation between the accumulation of the antioxidants and the equilibrium concentration of oxygen in the growth medium, which depended on the intensities of photosynthesis and respiration has been analyzed.

  11. Synthesis of Imine-Naphthol Tripodal Ligand and Study of Its Coordination Behaviour towards Fe(III, Al(III, and Cr(III Metal Ions

    Directory of Open Access Journals (Sweden)

    Kirandeep Kaur

    2014-01-01

    Full Text Available A hexadentate Schiff base tripodal ligand is synthesized by the condensation of tris (2-aminoethyl amine with 2-hydroxy-1-naphthaldehyde and characterized by various spectroscopic techniques like UV-VIS, IR, NMR, MASS, and elemental analysis. The solution studies by potentiometric and spectrophotometric methods are done at 25 ± 1°C, µ=0.1 M KCl, to calculate the protonation constants of the ligand and formation constants of metal complexes formed by the ligand with Fe(III, Al(III, and Cr(III metal ions. The affinity of the ligand towards Fe(III is compared with deferiprone (a drug applied for iron intoxication and transferrin (the main Fe(III binding protein in plasma. Structural analysis of the ligand and the metal complexes was done using semiempirical PM6 method. Electronic and IR spectra are calculated by semiempirical methods and compared with experimental one.

  12. Synthesis of Imine-Naphthol Tripodal Ligand and Study of Its Coordination Behaviour towards Fe(III), Al(III), and Cr(III) Metal Ions.

    Science.gov (United States)

    Kaur, Kirandeep; Baral, Minati

    2014-01-01

    A hexadentate Schiff base tripodal ligand is synthesized by the condensation of tris (2-aminoethyl) amine with 2-hydroxy-1-naphthaldehyde and characterized by various spectroscopic techniques like UV-VIS, IR, NMR, MASS, and elemental analysis. The solution studies by potentiometric and spectrophotometric methods are done at 25 ± 1°C, µ = 0.1 M KCl, to calculate the protonation constants of the ligand and formation constants of metal complexes formed by the ligand with Fe(III), Al(III), and Cr(III) metal ions. The affinity of the ligand towards Fe(III) is compared with deferiprone (a drug applied for iron intoxication) and transferrin (the main Fe(III) binding protein in plasma). Structural analysis of the ligand and the metal complexes was done using semiempirical PM6 method. Electronic and IR spectra are calculated by semiempirical methods and compared with experimental one.

  13. Synthesis of a novel heptacoordinated Fe(III) dinuclear complex: experimental and theoretical study of the magnetic properties.

    Science.gov (United States)

    Craig, Gavin A; Barrios, Leoní A; Sánchez Costa, José; Roubeau, Olivier; Ruiz, Eliseo; Teat, Simon J; Wilson, Chick C; Thomas, Lynne; Aromí, Guillem

    2010-05-28

    A new functionalized bis-pyrazol-pyridine ligand has been prepared by reaction with hydrazine of the corresponding bis-β-diketone precursor, also unprecedented. The aerobic reaction of this ligand with ferrous thiocyanate in the presence of ascorbic or oxalic acid affords the dinuclear complex of seven-coordinate Fe(III), [Fe₂(H₄L2)₂(ox)(NCS)₄] (1), as revealed by single crystal X-ray diffraction. This may represent an entry into a new family of [Fe₂] compounds with heptacoordinate metal centres. The capacity of this unusual chromophore to undergo magnetic super-exchange was investigated by means of bulk magnetization and DFT calculations. Both approaches confirmed the presence of antiferromagnetic interactions within the molecule. The theoretical investigation has served to describe the magnetic orbitals of Fe(III) in this unusual coordination geometry, as well as the exchange mechanism. A brief review of the scarce number of iron heptacoordinate complexes reported in the literature is also included and discussed.

  14. Interaction of Imidazole Containing Hydroxamic Acids with Fe(III: Hydroxamate Versus Imidazole Coordination of the Ligands

    Directory of Open Access Journals (Sweden)

    Etelka Farkas

    2007-01-01

    Full Text Available Solution equilibrium studies on Fe(III complexes formed with imidazole-4-carbohydroxamic acid (Im-4-Cha, N-Me-imidazole-4-carbohydroxamic acid (N-Me-Im-4-Cha, imidazole-4-acetohydroxamic acid (Im-4-Aha, and histidinehydroxamic acid (Hisha have been performed by using pH-potentiometry, UV-visible spectrophotometry, EPR, ESI-MS, and H-NMR methods. All of the obtained results demonstrate that the imidazole moiety is able to play an important role very often in the interaction with Fe(III, even if this metal ion prefers the hydroxamate chelates very much. If the imidazole moiety is in α-position to the hydroxamic one (Im-4-Cha and N-Me-Im-4-Cha its coordination to the metal ion is indicated unambiguously by our results. Interestingly, parallel formation of (Nimidazole, Ohydroxamate, and (Ohydroxamate, Ohydroxamate type chelates seems probable with N-Me-Im-4-Cha. The imidazole is in β-position to the hydroxamic moiety in Im-4-Aha and an intermolecular noncovalent (mainly H-bonding interaction seems to organize the intermediate-protonated molecules in this system. Following the formation of mono- and bishydroxamato mononuclear complexes, only EPR silent species exists in the Fe(III-Hisha system above pH 4, what suggests the rather significant “assembler activity” of the imidazole (perhaps together with the ammonium moiety.

  15. Interaction of imidazole containing hydroxamic acids with Fe(III): hydroxamate versus imidazole coordination of the ligands.

    Science.gov (United States)

    Farkas, Etelka; Bátka, Dávid; Csóka, Hajnalka; Nagy, Nóra V

    2007-01-01

    Solution equilibrium studies on Fe(III) complexes formed with imidazole-4-carbohydroxamic acid (Im-4-Cha), N-Me-imidazole-4-carbohydroxamic acid (N-Me-Im-4-Cha), imidazole-4-acetohydroxamic acid (Im-4-Aha), and histidinehydroxamic acid (Hisha) have been performed by using pH-potentiometry, UV-visible spectrophotometry, EPR, ESI-MS, and H1-NMR methods. All of the obtained results demonstrate that the imidazole moiety is able to play an important role very often in the interaction with Fe(III), even if this metal ion prefers the hydroxamate chelates very much. If the imidazole moiety is in alpha-position to the hydroxamic one (Im-4-Cha and N-Me-Im-4-Cha) its coordination to the metal ion is indicated unambiguously by our results. Interestingly, parallel formation of (Nimidazole, Ohydroxamate), and (Ohydroxamate, Ohydroxamate) type chelates seems probable with N-Me-Im-4-Cha. The imidazole is in beta-position to the hydroxamic moiety in Im-4-Aha and an intermolecular noncovalent (mainly H-bonding) interaction seems to organize the intermediate-protonated molecules in this system. Following the formation of mono- and bishydroxamato mononuclear complexes, only EPR silent species exists in the Fe(III)-Hisha system above pH 4, what suggests the rather significant "assembler activity" of the imidazole (perhaps together with the ammonium moiety).

  16. Start-up of a completely autotrophic nitrogen removal process in a three- dimensional electrode-biofilm reactor%三维电极生物膜反应器全程自养脱氮的启动研究

    Institute of Scientific and Technical Information of China (English)

    郭劲松; 杨琳; 陈猷鹏; 方芳; 唐金晶

    2012-01-01

    A completely autotrophic nitrogen removal process was started up in a three-dimensional electrode-biofilm reactor for artificial ammonia wastewater treatment. The titanium rod coated with a thin layer of ruthenium was used as anode to generate oxygen. In the aerobic area, NH4^+-N was oxidized to NO3^- -N or NO2^- -N by nitrifying bacteria. The active carbon fiber-felt was used as cathode to generate hydrogen. And in this anaerobic area, the denitrification was completed while hydrogen was acted as the electron donor. A lot of carbon particles were filled in tbe cathode area used as three- dimensional electrode. Nitrification and denitrification process were controlled by adjusting dissolved oxygen and pH values under the condition that the initial concentration of ammonia-nitrogen was 30 mg·L^-1 , the hydraulic retention time was 24h and the temperature was 30℃. After biofilm was formed and stabilized, the removal rate of NH4^+-N and TN achieved 97.8% and 92.4% respectively. It was indicated that the completely autotrophic nitrogen removal was started up successfully. The scanning electron microscopy showed that the bacteria on surface of activated carbon fiber felt were mainly short rod-shaped Pseudomonas, while the bacteria on the surface of the activated carbon particles were Micrococcus denitrificans. They both belong to hydrogen autotrophic denitrifying bacteria. In the reactor, the stable autotrophic nitrogen system was gradually established.%采用人工配制氨氮废水,对三维电极生物膜反应器进行全程自养脱氮的启动研究.反应器中阳极采用钌涂层钛棒,在阳极区电解水产氧供硝化菌进行硝化反应;阴极采用活性炭纤维毡,并在阴极区填充活性炭颗粒构建三维电极,在阴极区电解水产氢供反硝化菌完成反硝化过程.在进水NH4^+-N浓度30mg·L^-1、温度30℃、HRT为24h的试验条件下,通过调节DO和pH实现对硝化和反硝化反应的控制.结果

  17. Characterization and Properties of Activated Carbon Prepared from Tamarind Seeds by KOH Activation for Fe(III) Adsorption from Aqueous Solution.

    Science.gov (United States)

    Mopoung, Sumrit; Moonsri, Phansiri; Palas, Wanwimon; Khumpai, Sataporn

    2015-01-01

    This research studies the characterization of activated carbon from tamarind seed with KOH activation. The effects of 0.5 : 1-1.5 : 1 KOH : tamarind seed charcoal ratios and 500-700°C activation temperatures were studied. FTIR, SEM-EDS, XRD, and BET were used to characterize tamarind seed and the activated carbon prepared from them. Proximate analysis, percent yield, iodine number, methylene blue number, and preliminary test of Fe(III) adsorption were also studied. Fe(III) adsorption was carried out by 30 mL column with 5-20 ppm Fe(III) initial concentrations. The percent yield of activated carbon prepared from tamarind seed with KOH activation decreased with increasing activation temperature and impregnation ratios, which were in the range from 54.09 to 82.03 wt%. The surface functional groups of activated carbon are O-H, C=O, C-O, -CO3, C-H, and Si-H. The XRD result showed high crystallinity coming from a potassium compound in the activated carbon. The main elements found in the activated carbon by EDS are C, O, Si, and K. The results of iodine and methylene blue adsorption indicate that the pore size of the activated carbon is mostly in the range of mesopore and macropore. The average BET pore size and BET surface area of activated carbon are 67.9764 Å and 2.7167 m(2)/g, respectively. Finally, the tamarind seed based activated carbon produced with 500°C activation temperature and 1.0 : 1 KOH : tamarind seed charcoal ratio was used for Fe(III) adsorption test. It was shown that Fe(III) was adsorbed in alkaline conditions and adsorption increased with increasing Fe(III) initial concentration from 5 to 20 ppm with capacity adsorption of 0.0069-0.019 mg/g.

  18. A new ion-selective electrode based on aluminium tungstate for Fe(III) determination in rock sample, pharmaceutical sample and water sample

    Indian Academy of Sciences (India)

    Mu Naushad

    2008-12-01

    An inorganic cation exchanger, aluminum tungstate (AT), has been synthesized by adding 0.1 M sodium tungstate gradually into 0.1 M aluminium nitrate at pH 1.2 with continuous stirring. The ion exchange capacity for Na+ ion and distribution coefficients of various metal ions was determined on the column of aluminium tungstate. The distribution studies of various metal ions showed the selectivity of Fe(III) ions by this cation exchange material. So, a Fe(III) ion-selective membrane electrode was prepared by using this cation exchange material as an electroactive material. The effect of plasticizers viz. dibutyl phthalate (DBP), dioctylphthalate (DOP), di-(butyl) butyl phosphate (DBBP) and tris-(2-ethylhexylphosphate) (TEHP), has also been studied on the performance of membrane sensor. It was observed that the membrane containing the composition AT: PVC: DBP in the ratio 2 : 20 : 15 displayed a useful analytical response with excellent reproducibility, low detection limit, wide working pH range (1–3.5), quick response time (15 s) and applicability over a wide concentration range of Fe(III) ions from 1 × 10-7 M to 1 × 10-1 M with a slope of 20 ± 1 mV per decade. The selectivity coefficients were determined by the mixed solution method and revealed that the electrode was selective for Fe(III) ions in the presence of interfering ions. The electrode was used for atleast 5 months without any considerable divergence in response characteristics. The constructed sensor was used as indicator electrode in the potentiometric titration of Fe(III) ions against EDTA and Fe(III) determination in rock sample, pharmaceutical sample and water sample. The results are found to be in good agreement with those obtained by using conventional methods.

  19. Humic substance-mediated Fe(III) reduction by a fermenting Bacillus strain from the alkaline gut of a humus-feeding scarab beetle larva.

    Science.gov (United States)

    Hobbie, Sven N; Li, Xiangzhen; Basen, Mirko; Stingl, Ulrich; Brune, Andreas

    2012-06-01

    Humus-feeding macroinvertebrates play an important role in the transformation of soil organic matter. Their diet contains significant amounts of redox-active components such as iron minerals and humic substances. In soil-feeding termites, acid-soluble Fe(III) and humic acids are almost completely reduced during gut passage. Here, we show that the reduction of Fe(III) and humic acids takes place also in the alkaline guts of scarab beetle larvae. Sterilized gut homogenates of Pachnoda ephippiata no longer converted Fe(III) to Fe(II), indicating an essential role of the gut microbiota in the process. From Fe(III)-reducing enrichment cultures inoculated with highly diluted gut homogenates, we isolated several facultatively anaerobic, alkali-tolerant bacteria that were closely related to metal-reducing isolates in the Bacillus thioparans group. Strain PeC11 showed a remarkable capacity for dissimilatory Fe(III) reduction, both at pH 7 and 10. Rates were strongly stimulated by the addition of the redox mediator 2,6-antraquinone disulfonate and by redox-active components in the fulvic-acid fraction of humus. Although the contribution of strain PeC11 to intestinal Fe(III) reduction in P. ephippiata remains to be further elucidated, our results corroborate the hypothesis that the lack of oxygen and the solubilization of humic substances in the extremely alkaline guts of humivorous soil fauna provide favorable conditions for the efficient reduction of Fe(III) and humic substances by a primarily fermentative microbiota.

  20. Characterization and Properties of Activated Carbon Prepared from Tamarind Seeds by KOH Activation for Fe(III) Adsorption from Aqueous Solution

    OpenAIRE

    Sumrit Mopoung; Phansiri Moonsri; Wanwimon Palas; Sataporn Khumpai

    2015-01-01

    This research studies the characterization of activated carbon from tamarind seed with KOH activation. The effects of 0.5 : 1–1.5 : 1 KOH : tamarind seed charcoal ratios and 500–700°C activation temperatures were studied. FTIR, SEM-EDS, XRD, and BET were used to characterize tamarind seed and the activated carbon prepared from them. Proximate analysis, percent yield, iodine number, methylene blue number, and preliminary test of Fe(III) adsorption were also studied. Fe(III) adsorption was carr...

  1. Sorption of arsenic to biogenic iron (oxyhydr)oxides produced in circumneutral environments

    Science.gov (United States)

    Sowers, Tyler D.; Harrington, James M.; Polizzotto, Matthew L.; Duckworth, Owen W.

    2017-02-01

    Arsenic (As) is a widespread and problematic pollutant that can be derived from natural or anthropogenic sources. Iron (oxyhydr)oxides readily sorb As and thus play critical roles in As cycling in terrestrial environments; however, little is known about the affinity and mechanism of As sorption by biogenic iron (oxyhydr)oxides formed in circumneutral environments. To investigate this, we conducted sorption isotherm and kinetics experiments to compare As(V) and As(III) sorption to synthetic 2-line ferrihydrite and iron biominerals harvested from the hyporheic zone of an uncontaminated creek. Inductively coupled plasma mass spectrometry (ICP-MS) was used to quantify both As(V) and As(III), and X-ray absorption spectroscopy (XAS) was utilized to obtain As and Fe K-edge spectra for As(V) and As(III) sorbed to environmentally collected and laboratory produced Fe(III) minerals. All environmental Fe(III) biominerals were determined to be structurally similar to 2-line ferrihydrite. However, environmental Fe(III) biominerals have a surface area normalized affinity for As(V) and for As(III) that is greater than or equivalent to synthetic 2-line ferrihydrite. Whereas the extent of sorption was similar for As(III) on all minerals, As(V) sorption to environmental Fe(III) biominerals was approximately three times higher than what was observed for synthetic 2-line ferrihydrite. Structural modeling of EXAFS spectra revealed that the same surface complexation structure was formed by As(V) and by As(III) on environmental Fe(III) biominerals and ferrihydrite. These results suggest that, despite similarities in binding mechanisms, Fe(III) biominerals may be more reactive sorbents that synthetic surrogates often used to model environmental reactivity.

  2. Atomistic Simulations of Uranium Incorporation into Iron (Hydr)Oxides

    Energy Technology Data Exchange (ETDEWEB)

    Kerisit, Sebastien N.; Felmy, Andrew R.; Ilton, Eugene S.

    2011-04-29

    Atomistic simulations were carried out to characterize the coordination environments of U incorporated in three Fe-(hydr)oxide minerals: goethite, magnetite, and hematite. The simulations provided information on U-O and U-Fe distances, coordination numbers, and lattice distortion for U incorporated in different sites (e.g., unoccupied versus occupied sites, octahedral versus tetrahedral) as a function of the oxidation state of U and charge compensation mechanisms (i.e., deprotonation, vacancy formation, or reduction of Fe(III) to Fe(II)). For goethite, deprotonation of first shell hydroxyls enables substitution of U for Fe(III) with a minimal amount of lattice distortion, whereas substitution in unoccupied octahedral sites induced appreciable distortion to 7-fold coordination regardless of U oxidation states and charge compensation mechanisms. Importantly, U-Fe distances of ~3.6 Å were associated with structural incorporation of U and cannot be considered diagnostic of simple adsorption to goethite surfaces. For magnetite, the octahedral site accommodates U(V) or U(VI) with little lattice distortion. U substituted for Fe(III) in hematite maintained octahedral coordination in most cases. In general, comparison of the simulations with available experimental data provides further evidence for the structural incorporation of U in iron (hydr)oxide minerals.

  3. Summer monsoon onset-induced changes of autotrophic pico- and nanoplankton in the largest monsoonal estuary along the west coast of India

    Digital Repository Service at National Institute of Oceanography (India)

    Mohan, A.P.; Jyothibabu, R.; Jagadeesan, L.; Lallu, K.R.; Karnan, C.

    , the total abundance of picoplankton community remained virtually unchanged in the upstream due to an increase in the abundance of picoeukaryotes. On the other hand, the autotrophic nanoplankton abundance increased from pre-monsoon levels of av. 3.8×106...

  4. An operational protocol for facilitating start-up of single-stage autotrophic nitrogen-removing reactors based on process stoichiometry

    DEFF Research Database (Denmark)

    Mutlu, Ayten Gizem; Vangsgaard, Anna Katrine; Sin, Gürkan;

    2013-01-01

    Start-up and operation of single-stage nitritation–anammox sequencing batch reactors (SBRs) for completely autotrophic nitrogen removal can be challenging and far from trivial. In this study, a step-wise procedure is developed based on stoichiometric analysis of the process performance from nitro...

  5. Enriched iron(III-reducing bacterial communities are shaped by carbon substrate and iron oxide mineralogy

    Directory of Open Access Journals (Sweden)

    Christopher J. Lentini

    2012-12-01

    Full Text Available Iron (Fe oxides exist in a spectrum of structures in the environment, with ferrihydrite widely considered the most bioavailable phase. Yet, ferrihydrite is unstable and rapidly transforms to more crystalline Fe(III oxides (e.g., goethite, hematite, which are poorly reduced by model dissimilatory Fe(III-reducing microorganisms. This begs the question, what processes and microbial groups are responsible for reduction of crystalline Fe(III oxides within sedimentary environments? Further, how do changes in Fe mineralogy shape oxide-hosted microbial populations? To address these questions, we conducted a large-scale cultivation effort using various Fe(III oxides (ferrihydrite, goethite, hematite and carbon substrates (glucose, lactate, acetate along a dilution gradient to enrich for microbial populations capable of reducing Fe oxides spanning a wide range of crystallinities and reduction potentials. While carbon source was the most important variable shaping community composition within Fe(III-reducing enrichments, both Fe oxide type and sediment dilution also had a substantial influence. For instance, with acetate as the carbon source, only ferrihydrite enrichments displayed a significant amount of Fe(III reduction and the well known dissimilatory metal reducer Geobacter sp. was the dominant organism enriched. In contrast, when glucose and lactate were provided, all three Fe oxides were reduced and reduction coincided with the presence of fermentative (e.g. Enterobacter spp. and sulfate-reducing bacteria (e.g. Desulfovibrio spp.. Thus, changes in Fe oxide structure and resource availability may shift Fe(III-reducing communities between dominantly metal-respiring to fermenting and/or sulfate-reducing organisms which are capable of reducing more recalcitrant Fe phases. These findings highlight the need for further targeted investigations into the composition and activity of speciation-directed metal-reducing populations within natural environments.

  6. Control of nitratation in an oxygen-limited autotrophic nitrification/denitrification rotating biological contactor through disc immersion level variation.

    Science.gov (United States)

    Courtens, Emilie N P; Boon, Nico; De Clippeleir, Haydée; Berckmoes, Karla; Mosquera, Mariela; Seuntjens, Dries; Vlaeminck, Siegfried E

    2014-03-01

    With oxygen supply playing a crucial role in an oxygen-limited autotrophic nitrification/denitrification (OLAND) rotating biological contactor (RBC), its controlling factors were investigated in this study. Disc rotation speeds (1.8 and 3.6rpm) showed no influence on the process performance of a lab-scale RBC, although abiotic experiments showed a significant effect on the oxygenation capacity. Estimations of the biological oxygen uptake rate revealed that 85-89% of the oxygen was absorbed by the microorganisms during the air exposure of the discs. Indeed, increasing the disc immersion (50 to 75-80%) could significantly suppress undesired nitratation, on the short and long term. The presented results demonstrated that nitratation could be controlled by the immersion level and revealed that oxygen control in an OLAND RBC should be predominantly based on the atmospheric exposure percentage of the discs.

  7. Seasonal dynamics of autotrophic and heterotrophic plankton metabolism and PCO2 in a subarctic Greenland fjord

    DEFF Research Database (Denmark)

    Sejr, Mikael K.; Krause-Jensen, Dorte; Dalsgaard, Tage;

    2014-01-01

    We measured net planktonic community production (NCP), community respiration (CR), and gross primary production (GPP) in September, February, and May in a subarctic Greenland fjord influenced by glacial meltwater and terrestrial runoff. Potential controls of pelagic carbon cycling, including...... the role of terrestrial carbon, were investigated by relating surface-water partial pressure of CO2 (PCO2), NCP, GPP, and CR to physicochemical conditions, chlorophyll a (Chl a) concentration, phytoplankton production, inventories of particulate (POC) and dissolved organic carbon (DOC) and vertical flux...... of POC. The planktonic community was net heterotrophic in the photic zone in September (NCP = −21 ± 45 mmol O2 m−2 d−1) and February (NCP = −17 mmol O2 m−2 d−1) but net autotrophic during a developing spring bloom in May (NCP = 129 ± 102 mmol O2 m−2 d−1). In September, higher temperatures, shorter day...

  8. Autotrophic growth and lipid production of Chlorella sorokiniana in lab batch and BIOCOIL photobioreactors: Experiments and modeling.

    Science.gov (United States)

    Concas, Alessandro; Malavasi, Veronica; Costelli, Cristina; Fadda, Paolo; Pisu, Massimo; Cao, Giacomo

    2016-07-01

    A novel mathematical model for the quantitative assessment of the effect of dissolved nitrogen on the autotrophic batch-growth and lipid accumulation of Chlorella sorokiniana, is proposed in this work. Model results have been validated through comparison with suitable experimental data performed in lab photobioreactors. Further experiments have been then performed using the BIOCOIL photobioreactor operated in fed-batch mode. The experimental results, which show that a maximum growth rate of 0.52day(-1) and a lipid content equal to 25%wt can be achieved with the BIOICOIL, have been successfully predicted through the proposed model. Therefore, the model might represent a first step toward the development of a tool for the scale-up and optimization of the operating conditions of BIOCOIL photobioreactors. Finally, the fatty acid methyl esters obtained by trans-esterification of lipids extracted from C. sorokiniana, have been analyzed in view of the assessment of their usability for producing biodiesel.

  9. Autotrophic denitrification performance and bacterial community at biocathodes of bioelectrochemical systems with either abiotic or biotic anodes.

    Science.gov (United States)

    Nguyen, Van Khanh; Hong, Sungsug; Park, Younghyun; Jo, Kyungmin; Lee, Taeho

    2015-02-01

    Two-chamber bioelectrochemical systems (BESs) have recently been developed for nitrate removal from nitrate-contaminated water. In this study, we compared the nitrate removal performance of biocathodes of BESs when using abiotic and biotic anodes. Acetate was used as electron donor in BESs with biotic anode, whereas a direct current power supply was used as energy source in BESs with abiotic anode. The nitrogen removal efficiency increased from 18.1% to 43.0% when the voltage supplied to the BES with abiotic anode increased from 0.7 V to 0.9 V, whereas no higher removal efficiency was obtained at a higher supplied voltage (1.1 V). The highest efficiency (78.0%) of autotrophic nitrogen removal was achieved when electron transfer from the biotic anode chamber of BESs was used. Unexpectedly, control of the cathode potential did not enhance nitrate removal in BESs with biotic anode. Special attention was paid to elucidate the differences of bacterial communities catalysing autotrophic denitrification in the biocathodes of BESs with abiotic and biotic anodes. Data from denaturing gradient gel electrophoresis and phylogenetic analysis suggested that denitrification in BESs with abiotic anode could be attributed to Nitratireductor sp., Shinella sp., and Dyella sp., whereas the dominant bacterial denitrifiers in BESs with biotic anode were found to be Pseudomonas sp., Curtobacterium sp., and Aeromonas sp. These results implied that biocathodes of BESs with biotic anode are more efficient than those of BESs with abiotic anode for nitrate removal from nitrate-contaminated water in practical applications.

  10. [Quantifying soil autotrophic microbes-assimilated carbon input into soil organic carbon pools following continuous 14C labeling].

    Science.gov (United States)

    Shi, Ran; Chen, Xiao-Juan; Wu, Xiao-Hong; Jian, Yan; Yuan, Hong-Zhao; Ge, Ti-Da; Sui, Fang-Gong; Tong, Cheng-Li; Wu, Jin-Shui

    2013-07-01

    Soil autotrophic microbe has been found numerous and widespread. However, roles of microbial autotrophic processes and the mechanisms of that in the soil carbon sequestration remain poorly understood. Here, we used soils incubated for 110 days in a closed, continuously labeled 14C-CO2 atmosphere to measure the amount of labeled C incorporated into the microbial biomass. The allocation of 14C-labeled assimilated carbon in variable soil C pools such as dissolved organic C (DOC) and microbial biomass C (MBC) were also examined over the 14C labeling span. The results showed that significant amounts of 14C-SOC were measured in paddy soils, which ranged from 69.06-133.81 mg x kg(-1), accounting for 0.58% to 0.92% of the total soil organic carbon (SOC). The amounts of 14C in the dissolved organic C (14C-DOC) and in the microbial biomass C (14C-MBC) were dependent on the soils, ranged from 2.54 to 8.10 mg x kg(-1), 19.50 to 49.16 mg x kg(-1), respectively. There was a significantly positive linear relationship between concentrations of 14C-SOC and 14C-MBC (R2 = 0.957**, P < 0.01). The 14C-DOC and 14C-MBC as proportions of total DOC, MBC, were 5.65%-24.91% and 4.23%-20.02%, respectively. Moreover, the distribution and transformation of microbes-assimilated-derived C had a greater influence on the dynamics of DOC and MBC than that on the dynamics of SOC. These data provide new insights into the importance of microorganisms in the fixation of atmospheric CO2 and of the potentially significant contributions made by microbial autotrophy to terrestrial C cycling.

  11. Mechanisms in Ruthenium(II) photochemistry and Iron(III) catalyzed oxidations : Photochemical, Electrochemical and Spectroscopic studies

    NARCIS (Netherlands)

    Unjaroen, Duenpen

    2017-01-01

    In this thesis, photochemical, electrochemical and spectroscopic studies of Ru(II), Fe(II), and Fe(III) complexes are described. The overall goal in this studies was to understanding process that occur during oxidation catalysis and photo irradiation and especially the changes in the structure that

  12. Transformation of hydroxycarbonate green rust into crystalline iron (hydr)oxides: Influences of reaction conditions and underlying mechanisms

    NARCIS (Netherlands)

    Wang, Xiaoming; Liu, Fan; Tan, W.; Feng, Xionghan; Koopal, L.K.

    2013-01-01

    Green rusts (GRs) are found as intermediate products between FeII hydroxides and FeIII oxyhydroxides in various anoxic environments. The transformation of hydroxycarbonate green rust GR1(CO32-) by air oxidation at different conditions and the underlying mechanisms were investigated using X-ray diffr

  13. A strictly anaerobic betaproteobacterium Georgfuchsia toluolica gen. nov., sp. nov. degrades aromatic compounds with Fe(III), Mn(IV) or nitrate as an electron acceptor

    NARCIS (Netherlands)

    Weelink, S.A.B.; Doesburg, van W.C.J.; Talarico Saia, F.; Rijpstra, I.; Smidt, H.; Röling, W.; Stams, A.J.M.

    2009-01-01

    A bacterium (strain G5G6) that grows anaerobically with toluene was isolated from a polluted aquifer (Banisveld, the Netherlands). The bacterium uses Fe(III), Mn(IV) and nitrate as terminal electron acceptors for growth on aromatic compounds. The bacterium does not grow on sugars, lactate or acetate

  14. The Nature of the intermediates in the reactions of Fe(III)- and Mn(III)-microperoxidase-8 with H2O2 : a rapid kinetic study

    NARCIS (Netherlands)

    Primus, J.L.; Grunenwald, S.; Hagedoorn, P.L.; Albrecht-Gary, A.M.; Mandon, D.; Veeger, C.

    2002-01-01

    Kinetic studies were performed with microperoxidase-8 (Fe(III)MP-8), the proteolytic breakdown product of horse heart cytochrome c containing an octapeptide linked to an iron protoporphyrin IX. Mn(III) was substituted for Fe(III) in Mn(III)MP-8.The mechanism of formation of the reactive metal-oxo an

  15. Equilibrium Fe isotope fractionation between inorganic aqueous Fe(III) and the siderophore complex, Fe(III)-desferrioxamine B

    DEFF Research Database (Denmark)

    Dideriksen, Knud; Baker, Joel A.; Stipp, Susan Louise Svane

    2008-01-01

    In oxic oceans, most of the dissolved iron (Fe) exists as complexes with siderophore-like, strongly coordinating organic ligands. Thus, the isotope composition of the little amount of free inorganic Fe that is available for precipitation and preservation in the geological record may largely...... differently complexed Fe(III) pools were separated by addition of Na2CO3, which led to immediate precipitation of the inorganic Fe without causing significant dissociation of Fe-desferrioxamine complexes. Experiments using enriched 57Fe tracer showed that isotopic equilibration between the 57Fe......(III)-bearing environments, such as soils and rivers, and may, for example, largely control the Fe isotope composition of marine Fe–Mn crusts....

  16. Adsorption of Ni(II, Cu(II and Fe(III from Aqueous Solutions Using Activated Carbon

    Directory of Open Access Journals (Sweden)

    A. Edwin Vasu

    2008-01-01

    Full Text Available An activated carbon was tested for its ability to remove transition metal ions from aqueous solutions. Physical, Chemical and liquid-phase adsorption characterizations of the carbon were done following standard procedures. Studies on the removal of Ni(II, Cu(II and Fe(III ions were attempted by varying adsorbate dose, pH of the metal ion solution and time in batch mode. The equilibrium adsorption data were fitted with Freundlich, Langmuir and Redlich-Peterson isotherms and the isotherm constants were evaluated. Time variation studies indicate that adsorptions follow pseudo-second order kinetics. pH was found to have a significant role to play in the adsorption. The processes were endothermic and the thermodynamic parameters were evaluated. Desorption studies indicate that ion-exchange mechanism is operating.

  17. The role of multihaem cytochromes in the respiration of nitrite in Escherichia coli and Fe(III) in Shewanella oneidensis.

    Science.gov (United States)

    Clarke, Thomas A; Holley, Tracey; Hartshorne, Robert S; Fredrickson, Jim K; Zachara, John M; Shi, Liang; Richardson, David J

    2008-10-01

    The periplasmic nitrite reductase system from Escherichia coli and the extracellular Fe(III) reductase system from Shewanella oneidensis contain multihaem c-type cytochromes as electron carriers and terminal reductases. The position and orientation of the haem cofactors in multihaem cytochromes from different bacteria often show significant conservation despite different arrangements of the polypeptide chain. We propose that the decahaem cytochromes of the iron reductase system MtrA, MtrC and OmcA comprise pentahaem 'modules' similar to the electron donor protein, NrfB, from E. coli. To demonstrate this, we have isolated and characterized the N-terminal pentahaem module of MtrA by preparing a truncated form containing five covalently attached haems. UV-visible spectroscopy indicated that all five haems were low-spin, consistent with the presence of bis-His ligand co-ordination as found in full-length MtrA.

  18. Ammonia-oxidizing archaea have more important role than ammonia-oxidizing bacteria in ammonia oxidation of strongly acidic soils.

    Science.gov (United States)

    Zhang, Li-Mei; Hu, Hang-Wei; Shen, Ju-Pei; He, Ji-Zheng

    2012-05-01

    Increasing evidence demonstrated the involvement of ammonia-oxidizing archaea (AOA) in the global nitrogen cycle, but the relative contributions of AOA and ammonia-oxidizing bacteria (AOB) to ammonia oxidation are still in debate. Previous studies suggest that AOA would be more adapted to ammonia-limited oligotrophic conditions, which seems to be favored by protonation of ammonia, turning into ammonium in low-pH environments. Here, we investigated the autotrophic nitrification activity of AOA and AOB in five strongly acidic soils (pHnitrification inhibitor dicyandiamide (DCD) completely inhibited the nitrification activity and CO(2) fixation by AOA, accompanied by decreasing thaumarchaeal amoA gene abundance. Bacterial amoA gene abundance decreased in all microcosms irrespective of DCD addition, and mostly showed no correlation with nitrate concentrations. Phylogenetic analysis of thaumarchaeal amoA gene and 16S rRNA gene revealed active (13)CO(2)-labeled AOA belonged to groups 1.1a-associated and 1.1b. Taken together, these results provided strong evidence that AOA have a more important role than AOB in autotrophic ammonia oxidation in strongly acidic soils.

  19. Comparing the effects of Fe(III) and Cu(II) on the binding affinity of erlotinib to bovine serum albumin using spectroscopic methods

    Energy Technology Data Exchange (ETDEWEB)

    Liu, Yan [The State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, Fujian 350002 (China); Chen, Mingmao [Institute of Biomedical and Pharmaceutical Technology, Fuzhou University, Fuzhou, Fujian 350002 (China); Song, Ling, E-mail: songling@fjirsm.ac.cn [The State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, Fujian 350002 (China)

    2013-02-15

    The interactions between erlotinib (ET) and bovine serum albumin (BSA) in the absence and presence of Cu(II) and Fe(III) in aqueous solution were investigated by using fluorescence, circular dichroism and three-dimensional (3D) fluorescence spectroscopic methods under simulative physiological conditions. Erlotinib effectively quenched the intrinsic fluorescence of BSA with slight redshifts in the absence and presence of Cu(II) and Fe(III). Cu(II) decreased the binding affinity and reduced the binding sites of erlotinib to BSA, while Fe(III) increased the binding affinity and binding sites of erlotinib to BSA. The negative values of {Delta}H and {Delta}S illustrate that the binding is mainly driven by the hydrogen bond and van der Waals force. The conformation of BSA was changed through ET binding in the presence of Cu(II) and Fe(III), which was revealed by circular dichroism, synchronous fluorescence and 3D fluorescence spectroscopic methods. The results indicate that the binding capability of erlotinib to BSA is affected by the types of metal ions. Highlights: Black-Right-Pointing-Pointer Interaction of erlotinib (ET) with BSA in the presence of Cu(II) and Fe(III) was studied. Black-Right-Pointing-Pointer Using various spectroscopic methods such as UV, CD, fluorescence and three-dimensional (3D) fluorescence. Black-Right-Pointing-Pointer Effects of metal ions on the binding activity of ET to BSA have not been reported. Black-Right-Pointing-Pointer Ternary system Cu(II)/Fe(III)-ET-BSA induced the conformational change of BSA.

  20. The catalytic ozonization of model lignin compounds in the presence of Fe(III) ions

    Science.gov (United States)

    Ben'ko, E. M.; Mukovnya, A. V.; Lunin, V. V.

    2007-05-01

    The ozonization of several model lignin compounds (guaiacol, 2,6-dimethoxyphenol, phenol, and vanillin) was studied in acid media in the presence of iron(III) ions. It was found that Fe3+ did not influence the initial rate of the reactions between model phenols and ozone but accelerated the oxidation of intermediate ozonolysis products. The metal concentration dependences of the total ozone consumption and effective rate constants of catalytic reaction stages were determined. Data on reactions in the presence of oxalic acid as a competing chelate ligand showed that complex formation with Fe3+ was the principal factor that accelerated the ozonolysis of model phenols at the stage of the oxidation of carboxylic dibasic acids and C2 aldehydes formed as intermediate products.

  1. Management of microbial community composition, architecture and performance in autotrophic nitrogen removing bioreactors through aeration regimes

    DEFF Research Database (Denmark)

    Mutlu, A. Gizem

    intensification in single-stage reactors. Single-stage reactors require biofilms or bioaggregates to provide the complementary redox niches for the aerobic and anaerobic bacteria that are required for nitritation and anaerobic ammonium oxidation (anammox), respectively. The nitritation/anammox process might...... evaluated as an approach to manipulate the microbial community structure, to reach efficient nitrogen removal performance, and to reduce nitrous oxide emissions from single-stage nitritation/anammox reactors. First, an iterative protocol was developed to diagnose reactor performance based on process...... stoichiometry and to propose actions to enhance performance based on discretized aeration parameters, restricted by an overall ratio of oxygen to ammonium loading. The protocol was successfully applied on two bioaggregate-based single-stage sequencing batch reactors during start-up; while recovering from major...

  2. Geobacter daltonii sp. nov., an Fe(III)- and uranium(VI)-reducing bacterium isolated from a shallow subsurface exposed to mixed heavy metal and hydrocarbon contamination.

    Science.gov (United States)

    Prakash, Om; Gihring, Thomas M; Dalton, Dava D; Chin, Kuk-Jeong; Green, Stefan J; Akob, Denise M; Wanger, Greg; Kostka, Joel E

    2010-03-01

    An Fe(III)- and uranium(VI)-reducing bacterium, designated strain FRC-32(T), was isolated from a contaminated subsurface of the USA Department of Energy Oak Ridge Field Research Center (ORFRC) in Oak Ridge, Tennessee, where the sediments are exposed to mixed waste contamination of radionuclides and hydrocarbons. Analyses of both 16S rRNA gene and the Geobacteraceae-specific citrate synthase (gltA) mRNA gene sequences retrieved from ORFRC sediments indicated that this strain was abundant and active in ORFRC subsurface sediments undergoing uranium(VI) bioremediation. The organism belonged to the subsurface clade of the genus Geobacter and shared 92-98 % 16S rRNA gene and 75-81 % rpoB gene sequence similarities with other recognized species of the genus. In comparison to its closest relative, Geobacter uraniireducens Rf4(T), according to 16S rRNA gene sequence similarity, strain FRC-32(T) showed a DNA-DNA relatedness value of 21 %. Cells of strain FRC-32(T) were Gram-negative, non-spore-forming, curved rods, 1.0-1.5 microm long and 0.3-0.5 microm in diameter; the cells formed pink colonies in a semisolid cultivation medium, a characteristic feature of the genus Geobacter. The isolate was an obligate anaerobe, had temperature and pH optima for growth at 30 degrees C and pH 6.7-7.3, respectively, and could tolerate up to 0.7 % NaCl although growth was better in the absence of NaCl. Similar to other members of the Geobacter group, strain FRC-32(T) conserved energy for growth from the respiration of Fe(III)-oxyhydroxide coupled with the oxidation of acetate. Strain FRC-32(T) was metabolically versatile and, unlike its closest relative, G. uraniireducens, was capable of utilizing formate, butyrate and butanol as electron donors and soluble ferric iron (as ferric citrate) and elemental sulfur as electron acceptors. Growth on aromatic compounds including benzoate and toluene was predicted from preliminary genomic analyses and was confirmed through successive transfer with

  3. Characterization and Properties of Activated Carbon Prepared from Tamarind Seeds by KOH Activation for Fe(III Adsorption from Aqueous Solution

    Directory of Open Access Journals (Sweden)

    Sumrit Mopoung

    2015-01-01

    Full Text Available This research studies the characterization of activated carbon from tamarind seed with KOH activation. The effects of 0.5 : 1–1.5 : 1 KOH : tamarind seed charcoal ratios and 500–700°C activation temperatures were studied. FTIR, SEM-EDS, XRD, and BET were used to characterize tamarind seed and the activated carbon prepared from them. Proximate analysis, percent yield, iodine number, methylene blue number, and preliminary test of Fe(III adsorption were also studied. Fe(III adsorption was carried out by 30 mL column with 5–20 ppm Fe(III initial concentrations. The percent yield of activated carbon prepared from tamarind seed with KOH activation decreased with increasing activation temperature and impregnation ratios, which were in the range from 54.09 to 82.03 wt%. The surface functional groups of activated carbon are O–H, C=O, C–O, –CO3, C–H, and Si–H. The XRD result showed high crystallinity coming from a potassium compound in the activated carbon. The main elements found in the activated carbon by EDS are C, O, Si, and K. The results of iodine and methylene blue adsorption indicate that the pore size of the activated carbon is mostly in the range of mesopore and macropore. The average BET pore size and BET surface area of activated carbon are 67.9764 Å and 2.7167 m2/g, respectively. Finally, the tamarind seed based activated carbon produced with 500°C activation temperature and 1.0 : 1 KOH : tamarind seed charcoal ratio was used for Fe(III adsorption test. It was shown that Fe(III was adsorbed in alkaline conditions and adsorption increased with increasing Fe(III initial concentration from 5 to 20 ppm with capacity adsorption of 0.0069–0.019 mg/g.

  4. The Rnf Complex of Clostridium ljungdahlii Is a Proton-Translocating Ferredoxin:NAD(+) Oxidoreductase Essential for Autotrophic Growth

    Energy Technology Data Exchange (ETDEWEB)

    Tremblay, PL; Zhang, T; Dar, SA; Leang, C; Lovley, DR

    2012-12-26

    It has been predicted that the Rnf complex of Clostridium ljungdahlii is a proton-translocating ferredoxin: NAD(+) oxidoreductase which contributes to ATP synthesis by an H+-translocating ATPase under both autotrophic and heterotrophic growth conditions. The recent development of methods for genetic manipulation of C. ljungdahlii made it possible to evaluate the possible role of the Rnf complex in energy conservation. Disruption of the C. ljungdahlii rnf operon inhibited autotrophic growth. ATP synthesis, proton gradient, membrane potential, and proton motive force collapsed in the Rnf-deficient mutant with H-2 as the electron source and CO2 as the electron acceptor. Heterotrophic growth was hindered in the absence of a functional Rnf complex, as ATP synthesis, proton gradient, and proton motive force were significantly reduced with fructose as the electron donor. Growth of the Rnf-deficient mutant was also inhibited when no source of fixed nitrogen was provided. These results demonstrate that the Rnf complex of C. ljungdahlii is responsible for translocation of protons across the membrane to elicit energy conservation during acetogenesis and is a multifunctional device also implicated in nitrogen fixation. IMPORTANCE Mechanisms for energy conservation in the acetogen Clostridium ljungdahlii are of interest because of its potential value as a chassis for the production of biocommodities with novel electron donors such as carbon monoxide, syngas, and electrons derived from electrodes. Characterizing the components implicated in the chemiosmotic ATP synthesis during acetogenesis by C. ljungdahlii is a prerequisite for the development of highly productive strains. The Rnf complex has been considered the prime candidate to be the pump responsible for the formation of an ion gradient coupled with ATP synthesis in multiple acetogens. However, experimental evidence for a proton-pumping Rnf complex has been lacking. This study establishes the C. ljungdahlii Rnf complex as

  5. The Robin, Erithacus Rubecula (Passeriformes, Turdidae, As a Component of Autotrophic Consortia of Forest Cenoses, Northeast Ukraine

    Directory of Open Access Journals (Sweden)

    Chaplygina A. B.

    2016-08-01

    Full Text Available The role of the robin, Erithacus rubecula Linnaeus, 1758 as a consort of autotrophic consortia is considered. It has been found that representatives of 9 higher taxa of animals (Mammalia, Aves, Gastropoda, Insecta, Arachnida, Acarina, Malacostraca, Diplopoda, Clitellata have trophic and topical links with the robin. At the same time, the robin is a consort of determinants of autotrophic consortia, which core is represented mostly by dominating species of deciduous trees (Quercus robur Linnaeus, 1753 (24.6 %, Tilia cordata Miller, 1768 (17.5 %, Acer platanoides Linnaeus, 1753 (22.8 %, Acer campestre Linnaeus, 1753, and also by sedges (Carex sp. and grasses (Poaceae. The robin also belongs to the concentre of the second and higher orders as a component of forest biogeocenoses and forms a complex trophic system. In the diet of its nestlings, there have been found 717 objects from 32 invertebrate taxa, belonging to the phylums Arthropoda (99.2 %, 31 species and Annelida (0.8 %, 1 species. The phylum Arthropoda was represented by the most numerous class Insecta (76.9 %, in which 10 orders (Lepidoptera (46.8 % dominates and 20 families were recorded, and also by the classes Arachnida (15.0 %, Malacostraca (5.3 % and Diplopoda (1.9 %. The invertebrate species composition was dominated by representatives of a trophic group of zoophages (14 species; 43.8 %; the portion of phytophages (7 species; 21.9 %, saprophages (18.7 %, and necrophages (15.6 % was the less. The highest number of food items was represented by phytophages (N = 717; 51 %, followed by zoophages (34 %, saprophages (12 %, and necrophages (3 %. The difference among study areas according to the number of food items and the number of species in the robin nestling diet is shown. In NNP “HF”, the highest number of food items was represented by phytophages - 47 % (N = 443, whereas zoophages were the most species-rich group (43.3 %, 13 species. In NNP “H”, phytophages also prevailed in

  6. An integrated process of three-dimensional biofilm-electrode with sulfur autotrophic denitrification (3DBER-SAD) for wastewater reclamation.

    Science.gov (United States)

    Hao, Ruixia; Meng, Chengcheng; Li, Jianbing

    2016-08-01

    A three-dimensional biofilm-electrode reactor (3DBER) was integrated with sulfur autotrophic denitrification (SAD) to improve nitrogen removal performance for wastewater reclamation. The impacts of influent carbon/nitrogen (C/N) ratio, electric current, and hydraulic retention time (HRT) were evaluated. The new process, abbreviated as 3DBER-SAD, achieved a more stable denitrification compared to the recently studied 3DBER in literature. Its nitrogen removal improved by about 45 % as compared to 3DBER, especially under low C/N ratio conditions. The results also revealed that the biofilm bacteria community of 3DBER-SAD contained 21.1 % of the genus Thauera, 19.3 % of the genus Thiobacillus and Sulfuricella, as well as 5.3 % of the genus Alicycliphilus, Pseudomonas, and Paracoccus. The synergy between these heterotrophic, sulfur autotrophic, and hydrogenotrophic denitrification bacteria was believed to cause the high and stable nitrogen removal performance under various operating conditions.

  7. A novel high-throughput drip-flow system to grow autotrophic biofilms of contrasting diversities

    DEFF Research Database (Denmark)

    Kinnunen, Marta; Dechesne, Arnaud; Albrechtsen, Hans-Jørgen;

    The impact of community diversity on the functioning and assembly of microbial systems remains a central questions in microbial ecology. This question is often addressed by either combining a few cultures without necessarily a history of coexistence, or by using environmental communities, which......, the effect of community composition and diversity on various ecological processes can then be rigorously examined. We hypothesize that the increased loading, resulting in thicker biofilms, will decrease the drift in the community and impose limited environmental filtering by providing more diverse niches....... Thus, thicker biofilms are likely to host greater diversity. A system with 40 replicates has been constructed using flow-through polypropylene columns housing a defined number of single-sized glass beads supported by a stainless steel mesh. Biofilms consisting primarily of ammonia oxidizing and nitrite...

  8. Oxidation of pyrite and iron sulfide by manganese dioxide in marine sediments

    DEFF Research Database (Denmark)

    Schippers, A.; Jørgensen, BB

    2001-01-01

    in the sediment. FeS2 and iron sulfide (FeS) were oxidized chemically at pH 8 by MnO2 but not by nitrate or amorphic Fe(III) oxide. Elemental sulfur and sulfate were the only products of FeS oxidation, whereas FeS2 was oxidized to a variety of sulfur compounds, mainly sulfate plus intermediates......, 1999). The processes are summarized by the overall equations: FeS2 + 7.5 MnO2 + 11 H+ --> Fe(OH)(3) + 2 SO42- + 7.5 Mn2+ + 4 H2O (1) FeS + 1.5 MnO2 + 3 H+ --> Fe(OH)(3) + S-o + 1.5 Mn2+ (2) For FeS2 oxidation the reaction rates related to the mineral surface area were 1.02 and 1.12 nmol m(-2) s(-1...... in the presence of MnO2. At the iron sulfide surface, Fe(III) is reduced to Fe(II) which is reoxidized to Fe(III) by MnO2. Thus, an Fe(II)/Fe(III) shuttle should transport electrons between the surfaces of the two solid compounds. Copyright (C) 2001 Elsevier Science Ltd....

  9. Sulfide oxidation and nitrate reduction for potential mitigation of H2S in landfills.

    Science.gov (United States)

    Fang, Yuan; Du, Yao; Feng, Huan; Hu, Li-Fang; Shen, Dong-Sheng; Long, Yu-Yang

    2015-04-01

    Because H2S emitted by landfill sites has seriously endangered human health, its removal is urgent. H2S removal by use of an autotrophic denitrification landfill biocover has been reported. In this process, nitrate-reducing and sulfide-oxidizing bacteria use a reduced sulfur source as electron donor when reducing nitrate to nitrogen gas and oxidizing sulfur compounds to sulfate. The research presented here was performed to investigate the possibility of endogenous mitigation of H2S by autotrophic denitrification of landfill waste. The sulfide oxidation bioprocess accompanied by nitrate reduction was observed in batch tests inoculated with mineralized refuse from a landfill site. Repeated supply of nitrate resulted in rapid oxidation of the sulfide, indicating that, to a substantial extent, the bioprocess may be driven by functional microbes. This bioprocess can be realized under conditions suitable for the autotrophic metabolic process, because the process occurred without addition of acetate. H2S emissions from landfill sites would be substantially reduced if this bioprocess was introduced.

  10. Optimization of a Nile Red method for rapid lipid determination in autotrophic, marine microalgae is species dependent.

    Science.gov (United States)

    Balduyck, Lieselot; Veryser, Cedrick; Goiris, Koen; Bruneel, Charlotte; Muylaert, Koenraad; Foubert, Imogen

    2015-11-01

    Several studies have been conducted to develop rapid methods for quantification of lipid content in microalgae, as an alternative for time consuming gravimetric methods. Different studies showed that lipid staining with Nile Red in whole cell suspensions and subsequently quantification by the use of a spectrofluorometric device is a promising method, but a profound optimization and validation is rare. It has already been proven that the correlation curve for quantification is species dependent, but it has not yet been investigated whether this is also the case for the optimization of the Nile Red assay protocol. Therefore, two autotrophic, marine microalgae, Nannochloropsis oculata and T-Isochrysis lutea, strongly differing in e.g. cell wall structure, were selected in this study to investigate whether optimization of the Nile Red assay is species dependent. Besides this, it was checked for one of these species, Nannochloropsis, whether the lipid content, determined by the Nile Red assay, could indeed be correlated with the neutral and/or total lipid content determined by gravimetric methods. It was found that optimization of the Nile Red assay was strongly species dependent. Consequently, optimization has to be done for each species before using the assay. For Nannochloropsis, a good correlation was found between total and neutral lipid content obtained by the Nile Red assay and by gravimetric methods.

  11. Cell adhesion, ammonia removal and granulation of autotrophic nitrifying sludge facilitated by N-acyl-homoserine lactones.

    Science.gov (United States)

    Li, An-Jie; Hou, Bao-Lian; Li, Mei-Xi

    2015-11-01

    In this study, six N-acyl-homoserine lactone (AHL) molecules (C6-HSL, C8-HSL, C10-HSL, 3-oxo-C6-HSL, 3-oxo-C8-HSL and 3-oxo-C10-HSL) were each dosed into a bioreactor and seeded using autotrophic nitrifying sludge (ANS). The effects of the AHLs on cell adhesion, nitrification and sludge granulation were investigated. The results indicated that the efficiencies of cell adhesion and ammonia removal both had a close correlation with the side chain length and β position substituent group of the AHLs. The best-performing AHL in terms of accelerating bacterial attached-growth was 3-oxo-C6-HSL, whereas C6-HSL outperformed the others in terms of the ammonia degradation rate. The addition of 3-oxo-C6-HSL or C6-HSL increased the biomass growth rate, microbial activity, extracellular proteins and nitrifying bacteria, which can accelerate the formation of nitrifying granules. Consequently, selecting AHL molecules that could improve bacteria in attached-growth mode and nitrification efficiency simultaneously will most likely facilitate the rapid granulation of nitrifying sludge.

  12. Enhanced accumulation of starch and total carbohydrates in alginate-immobilized Chlorella spp. induced by Azospirillum brasilense: I. Autotrophic conditions.

    Science.gov (United States)

    Choix, Francisco J; de-Bashan, Luz E; Bashan, Yoav

    2012-10-10

    The effect of the microalgae-growth promoting bacterium Azospirillum brasilense on accumulation of total carbohydrates and starch in two species of Chlorella (Chlorella vulgaris and Chlorella sorokiniana), when the bacterium and each microalga were jointly immobilized in alginate beads was studied under autotrophic conditions for 144 h in synthetic medium. The interaction of the bacterium with the microalgae enhanced accumulation of total carbohydrate and starch. Cells of Chlorella accumulated the highest amounts of carbohydrate after incubation for 24h. Yet, this did not coincide with the highest affinity and volumetric productivity measured in these cultures. However, after incubation for 72 h, mainly in jointly immobilized treatments of both microalgae species, the cultures reached their highest total carbohydrate content (mainly as starch) and also the highest affinity and volumetric productivity. These results demonstrate the potential of A. brasilense to affect carbohydrates and starch accumulation in Chlorella spp. when both microorganisms are co-cultured, which can be an important tool for applications of microalgae.

  13. Contrasting diel hysteresis between soil autotrophic and heterotrophic respiration in a desert ecosystem under different rainfall scenarios.

    Science.gov (United States)

    Song, Weimin; Chen, Shiping; Zhou, Yadan; Wu, Bo; Zhu, Yajuan; Lu, Qi; Lin, Guanghui

    2015-11-30

    Diel hysteresis occurs often between soil CO2 efflux (R(S)) and temperature, yet, little is known if diel hysteresis occurs in the two components of R(S), i.e., autotrophic respiration (R(A)) and heterotrophic respiration (R(H)), and how diel hysteresis will respond to future rainfall change. We conducted a field experiment in a desert ecosystem in northern China simulating five different scenarios of future rain regimes. Diel variations of soil CO2 efflux and soil temperature were measured on Day 6 and Day 16 following the rain addition treatments each month during the growing season. We found contrasting responses in the diel hysteresis of R(A) and R(H) to soil temperature, with a clockwise hysteresis loop for R(H) but a counter-clockwise hysteresis loop for R(A). Rain addition significantly increased the magnitude of diel hysteresis for both R(H) and R(A) on Day 6, but had no influence on either on Day 16 when soil moisture was much lower. These findings underline the different roles of biological (i.e. plant and microbial activities) and physical-chemical (e.g. heat transport and inorganic CO2 exchange) processes in regulating the diel hysteresis of R(A) and R(H), which should be considered when estimating soil CO2 efflux in desert regions under future rainfall regime.

  14. Autotrophic methanotrophy in verrucomicrobia: Methylacidiphilum fumariolicum SolV uses the Calvin-Benson-Bassham cycle for carbon dioxide fixation.

    Science.gov (United States)

    Khadem, Ahmad F; Pol, Arjan; Wieczorek, Adam; Mohammadi, Seyed S; Francoijs, Kees-Jan; Stunnenberg, Henk G; Jetten, Mike S M; Op den Camp, Huub J M

    2011-09-01

    Genome data of the extreme acidophilic verrucomicrobial methanotroph Methylacidiphilum fumariolicumstrain SolV indicated the ability of autotrophic growth. This was further validated by transcriptome analysis, which showed that all genes required for a functional Calvin-Benson-Bassham (CBB) cycle were transcribed. Experiments with (13)CH(4) or (13)CO(2) in batch and chemostat cultures demonstrated that CO(2) is the sole carbon source for growth of strain SolV. In the presence of CH(4), CO(2) concentrations in the headspace below 1% (vol/vol) were growth limiting, and no growth was observed when CO(2)concentrations were below 0.3% (vol/vol). The activity of the key enzyme of the CBB cycle, ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO), measured with a (13)C stable-isotope method was about 70 nmol CO(2) fixed · min(-1)· mg of protein(-1). An immune reaction with antibody against the large subunit of RuBisCO on Western blots was found only in the supernatant fractions of cell extracts. The apparent native mass of the RuBisCO complex in strain SolV was about 482 kDa, probably consisting of 8 large (53-kDa) and 8 small (16-kDa) subunits. Based on phylogenetic analysis of the corresponding RuBisCO gene, we postulate that RuBisCO of the verrucomicrobial methanotrophs represents a new type of form I RuBisCO.

  15. Enhanced lipidic algae biomass production using gas transfer from a fermentative Rhodosporidium toruloides culture to an autotrophic Chlorella protothecoides culture.

    Science.gov (United States)

    Santos, C A; Caldeira, M L; Lopes da Silva, T; Novais, J M; Reis, A

    2013-06-01

    In order to produce single-cell oil for biodiesel, a yeast and a microalga were, for the first time, grown in two separate reactors connected by their gas-phases, taking advantage of their complementary nutritional metabolisms, i.e., respiration and photosynthesis. The yeast Rhodosporidium toruloides was used for lipid production, originating a carbon dioxide-enriched outlet gas stream which in turn was used to stimulate the autotrophic growth of Chlorella protothecoides in a vertical-alveolar-panel (VAP) photobioreactor. The microalgal biomass productivity was 0.015 gL(-1)h(-1), and its lipid productivity attained 2.2 mgL(-1)h(-1) when aerated with the outlet gas stream from the yeast fermenter. These values represent an increase of 94% and 87%, respectively, as compared to a control culture aerated with air. The CO2 bio-fixed by the microalgal biomass reached an estimated value of 29 mgL(-1)h(-1) in the VAP receiving the gas stream from the fermenter, a value 1.9 times higher than that measured in the control VAP.

  16. High-efficient nitrogen removal by coupling enriched autotrophic-nitrification and aerobic-denitrification consortiums at cold temperature.

    Science.gov (United States)

    Zou, Shiqiang; Yao, Shuo; Ni, Jinren

    2014-06-01

    This study paid particular attention to total nitrogen removal at low temperature (10°C) by excellent coupling of enriched autotrophic nitrifying and heterotrophic denitrifying consortiums at sole aerobic condition. The maximum specific nitrifying rate of the nitrifying consortium reached 8.85mgN/(gSSh). Further test in four identical lab-scale sequencing batch reactors demonstrated its excellent performance for bioaugmentation in potential applications. On the other hand, the aerobic denitrifying consortium could achieve a specific denitrifying rate of 32.93mgN/(gSSh) under dissolved oxygen of 1.0-1.5mg/L at 10°C. Coupling both kinds of consortiums was proved very successful for a perfect total nitrogen (TN) removal at COD/N of 4 and dissolved oxygen of 1.5-4.5mg/L, which was hardly reached by any single consortium reported previously. The encouraging results from coupling aerobic consortiums implied a huge potential in practical treatment of low-strength domestic wastewater (200-300mg/L COD) during wintertime.

  17. Synthesis and magnetic properties of Co1-xZnxFe2O4 (x=0÷1) nanopowders by thermal decomposition of Co(II), Zn(II) and Fe(III) carboxylates

    Science.gov (United States)

    Stefanescu, Mircea; Bozdog, Marius; Muntean, Cornelia; Stefanescu, Oana; Vlase, Titus

    2015-11-01

    Nanoparticles of cobalt-zinc ferrite Co1-xZnxFe2O4 with x varying from 0 to 1.0 were prepared by a new method, the thermal decomposition of carboxylates of Fe(III), Co(II) and Zn(II). The obtained carboxylate precursor was characterized by thermal analysis and FT-IR spectroscopy. The precursor was annealed at 350, 600 and 1000 °C. It was found that the spinel cobalt-zinc ferrite was formed starting at 350 °C, but in mixture with simple oxides γ-Fe2O3, Co3O4 and ZnO. At 1000 °C Co1-xZnxFe2O4 was formed quantitatively as a single, well-crystallized phase. The saturation magnetization of the samples annealed at 1000 °C decreased significantly with increasing Zn2+ content from 83.93 emu/g (x=0) to 4.92 emu/g (x=1.0). At 350 and 600 °C the saturation magnetization had the same trend, even if there were contributions of other magnetic phases. Obtaining of spinel ferrite was evidenced by X-ray diffractometry and FT-IR spectrometry. Powder morphology was determined by scanning electron microscopy. Magnetic properties of the synthesized ferrites were investigated employing a conventional induction method.

  18. SYNTHESIS, CHARACTERIZATION AND BI OLOGICAL ACTIVITY OF FE-III AND CO-II COMPLEXES DERIVED FROM 4-CHLORO-2-[(2-FURANYLMETHYL-AMINO]-5 SULFAMOYLBENZOIC ACID

    Directory of Open Access Journals (Sweden)

    Suman Malik

    2015-05-01

    Full Text Available The present investigation is an attempt to synth esize and characterize the ligand 4-chloro-2-[(2- furanylmethyl - amino]-5-sulfamoylbenzoic acid, and its Fe-III and Co-II complexes. The nature of bonding and the geometry of the complexes have be en deduced from elemental analysis, magnetic moment measurements and conductivity measurements. Conduc tometric titrations have suggested meta l-ligand ratio of 1:2 for both Fe(III and Co(II complexes. The ligand behaves as a bidentate with N, O donor atoms. The electronic absorption spectra and magnetic susceptibility measurements of th e complexes indicates octahedral geometry for both the complexes. IR, UV-Visible and SEM studies have been carried out to s uggest the tentative structure for the complexes. The synthesized ligand as well as their metal complexes were scree ned for diuretic activity. The results revealed that the complexes are more potent diuretic than the ligand.

  19. IR, UV-Vis, magnetic and thermal characterization of chelates of some catecholamines and 4-aminoantipyrine with Fe(III) and Cu(II)

    Science.gov (United States)

    Mohamed, Gehad G.; Zayed, M. A.; El-Dien, F. A. Nour; El-Nahas, Reham G.

    2004-07-01

    The dopamine derivatives participate in the regulation of wide variety of physiological functions in the human body and in medication life. Increase and/or decrease in the concentration of dopamine in human body reflect an indication for diseases such as Schizophrenia and/or Parkinson diseases. α-Methyldopa (α-MD) in tablets is used in medication of hypertension. The Fe(III) and Cu(II) chelates with coupled products of adrenaline hydrogen tartarate (AHT), levodopa (LD), α-MD and carbidopa (CD) with 4-aminoantipyrine (4-AAP) are prepared and characterized. Different physico-chemical methods like IR, magnetic and UV-Vis spectra are used to investigate the structure of these chelates. Fe(III) form 1:2 (M:catecholamines) chelates while Cu(II) form 1:1 chelates. Catecholamines behave as a bidentate mono- or dibasic ligands in binding to the metal ions. IR spectra show that the catecholamines are coordinated to the metal ions in a bidentate manner with O,O donor sites of the phenolic - OH. Magnetic moment measurements reveal the presence of Fe(III) chelates in octahedral geometry while the Cu(II) chelates are square planar. The thermal decomposition of Fe(III) and Cu(II) complexes is studied using thermogravimetric (TGA) and differential thermal analysis (DTA) techniques. The water molecules are removed in the first step followed immediately by decomposition of the ligand molecules. The activation thermodynamic parameters, such as, energy of activation, enthalpy, entropy and free energy change of the complexes are evaluated and the relative thermal stability of the complexes are discussed.

  20. A family of enantiopure Fe(III)4 single molecule magnets: fine tuning of energy barrier by remote substituent.

    Science.gov (United States)

    Zhu, Yuan-Yuan; Cui, Chang; Qian, Kang; Yin, Ji; Wang, Bing-Wu; Wang, Zhe-Ming; Gao, Song

    2014-08-21

    A new family of enantiopure star-shaped Fe(III)4 single-molecule magnets (SMMs) with the general formula [Fe4(L(K))6] (H2L = (R or S)-2-((2-hydroxy-1-phenylethylimino methyl)phenol); K = H (), Cl (), Br (), I (), and t-Bu ()), were structurally and magnetically characterized. Complex was reported in our previous paper (Chem. Commun., 2011, 47, 8049-8051). Detailed magnetic measurements and a systematic magneto-structural correlation study revealed that the SMM properties of this series of compounds can be finely tuned by the remote substituent of the ligands. Although the change in the coordination environment of the central Fe(3+) ions is very small, the properties of SMM behavior are changed considerably. All five complexes display frequency dependence of the ac susceptibility. However, the χ peaks of complexes and cannot be observed down to 0.5 K. The fitted anisotropy energy barriers (Ueff) of complexes , , and were 5.9, 7.1, and 11.0 K, respectively. Moreover, the hysteresis loops of these three complexes can be also observed around 0.5 K. Magneto-structural correlation analyses revealed that the coordination symmetry of the central Fe(3+) ion and the intermolecular interaction are two key factors affecting the SMM properties. Deviation to a trigonal prism coordination environment and the existence of intermolecular interactions between neighboring clusters may both reduce the anisotropy energy barriers.

  1. Mixed ligand complex formation of FeIII with boric acid and typical N-donor multidentate ligands

    Indian Academy of Sciences (India)

    G N Mukherjee; Ansuman Das

    2002-06-01

    Equilibrium study of the mixed ligand complex formation of FeIII with boric acid in the absence and in the presence of 2,2'-bipyridine, 1,10-phenanthroline, diethylenetriamine and triethylenetetramine (L) in different molar ratios provides evidence of formation of Fe(OH)2+, Fe(OH)$^{+}_{2}$, Fe(L)3+, Fe(H2BO4), Fe(OH)(H2BO4)-, Fe(OH)2(H2BO4)2-, Fe(L)(H2BO4) and Fe2(L)2(BO4)+ complexes. Fe(L)$^{3+}_{2}$, Fe(L)2(H2BO4) and Fe2(L)4(BO4)+ complexes are also indicated with 2,2'-bipyridine and 1,10-phenanthroline. Complex formation equilibria and stability constants of the complexes at 25 ± 0 × 1° C in aqueous solution at a fixed ionic strength, = 0.1 mol -3 (NaNO3) have been determined by potentiometric method.

  2. Crystal structure of the coordination polymer [FeIII2{PtII(CN4}3

    Directory of Open Access Journals (Sweden)

    Maksym Seredyuk

    2015-01-01

    Full Text Available The title complex, poly[dodeca-μ-cyanido-diiron(IIItriplatinum(II], [FeIII2{PtII(CN4}3], has a three-dimensional polymeric structure. It is built-up from square-planar [PtII(CN4]2− anions (point group symmetry 2/m bridging cationic [FeIIIPtII(CN4]+∞ layers extending in the bc plane. The FeII atoms of the layers are located on inversion centres and exhibit an octahedral coordination sphere defined by six N atoms of cyanide ligands, while the PtII atoms are located on twofold rotation axes and are surrounded by four C atoms of the cyanide ligands in a square-planar coordination. The geometrical preferences of the two cations for octahedral and square-planar coordination, respectively, lead to a corrugated organisation of the layers. The distance between neighbouring [FeIIIPtII(CN4]+∞ layers corresponds to the length a/2 = 8.0070 (3 Å, and the separation between two neighbouring PtII atoms of the bridging [PtII(CN4]2− groups corresponds to the length of the c axis [7.5720 (2 Å]. The structure is porous with accessible voids of 390 Å3 per unit cell.

  3. The Role of Coulomb Interactions for Spin Crossover Behaviors and Crystal Structural Transformation in Novel Anionic Fe(III Complexes from a π-Extended ONO Ligand

    Directory of Open Access Journals (Sweden)

    Suguru Murata

    2016-05-01

    Full Text Available To investigate the π-extension effect on an unusual negative-charged spin crossover (SCO FeIII complex with a weak N2O4 first coordination sphere, we designed and synthesized a series of anionic FeIII complexes from a π-extended naphthalene derivative ligand. Acetonitrile-solvate tetramethylammonium (TMA salt 1 exhibited an SCO conversion, while acetone-solvate TMA salt 2 was in a high-spin state. The crystal structural analysis for 2 revealed that two-leg ladder-like cation-anion arrays derived from π-stacking interactions between π-ligands of the FeIII complex anion and Coulomb interactions were found and the solvated acetone molecules were in one-dimensional channels between the cation-anion arrays. A desolvation-induced single-crystal-to-single-crystal transformation to desolvate compound 2’ may be driven by Coulomb energy gain. Furthermore, the structural comparison between quasi-polymorphic compounds 1 and 2 revealed that the synergy between Coulomb and π-stacking interactions induces a significant distortion of coordination structure of 2.

  4. Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene.

    Science.gov (United States)

    Offre, Pierre; Prosser, James I; Nicol, Graeme W

    2009-10-01

    Autotrophic ammonia-oxidizing bacteria were considered to be responsible for the majority of ammonia oxidation in soil until the recent discovery of the autotrophic ammonia-oxidizing archaea. To assess the relative contributions of bacterial and archaeal ammonia oxidizers to soil ammonia oxidation, their growth was analysed during active nitrification in soil microcosms incubated for 30 days at 30 degrees C, and the effect of an inhibitor of ammonia oxidation (acetylene) on their growth and soil nitrification kinetics was determined. Denaturing gradient gel electrophoresis (DGGE) analysis of bacterial ammonia oxidizer 16S rRNA genes did not detect any change in their community composition during incubation, and quantitative PCR (qPCR) analysis of bacterial amoA genes indicated a small decrease in abundance in control and acetylene-containing microcosms. DGGE fingerprints of archaeal amoA and 16S rRNA genes demonstrated changes in the relative abundance of specific crenarchaeal phylotypes during active nitrification. Growth was also indicated by increases in crenarchaeal amoA gene copy number, determined by qPCR. In microcosms containing acetylene, nitrification and growth of the crenarchaeal phylotypes were suppressed, suggesting that these crenarchaea are ammonia oxidizers. Growth of only archaeal but not bacterial ammonia oxidizers occurred in microcosms with active nitrification, indicating that ammonia oxidation was mostly due to archaea in the conditions of the present study.

  5. Oxidation of Elemental Sulfur in Selected Soils of China

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    An incubation experiment was carried out in laboratory to study the effect of temperature, moisture,phosphorus, organic matter, cropping and previous elemental sulfur application on elemental sulfur oxidation in four selected soils, fluvo-aquic soil, black soil, yellow-brown soil and red soil. In all the soils tested, sulfur oxidation rate was influenced by temperature and the temperature coefficient (Q10) values at the range from 10to 30 ℃ were 4.41, 4.05, 6.19 and 3.71 for the four soils, respectively. The rate of sulfur oxidation was parabolically related to soil water content. The optimum moisture content for the maximum oxidation rate was different among soils. Phosphorus increased the oxidation rate of elemental sulfur by 57.7%, 33.1%, 21.7% and 26.4% for the above four soils, respectively, compared with the control (no phosphorus applied). Organic material of corn straw which was ground and passed through a 0.5-mm sieve also increased the oxidation rate of elemental sulfur in the four soils by 59.8%, 7.8%, 39.2% and 540.4%, respectively. Elemental sulfur which was applied previously to soils significantly enhanced the oxidation of elemental sulfur subsequently added and increased sulfur-oxidizing populations such as autotrophic elemental sulfur oxidizers with pH optimum 6.8, autotrophic thiosulfate oxidizers with pH optimum 6.8, heterotrophic thiosulfate oxidizers and heterotrophic sulfate producers. Cropping had little effect on lemental sulfur-oxidizing potentiality of soils.

  6. Synthesis, characterization and stability of Cr(III) and Fe(III) hydroxides.

    Science.gov (United States)

    Papassiopi, N; Vaxevanidou, K; Christou, C; Karagianni, E; Antipas, G S E

    2014-01-15

    Chromium is a common contaminant of soils and aquifers and constitutes a major environmental problem. In nature, chromium usually exists in the form of two oxidation states, trivalent, Cr(III), which is relatively innocuous for biota and for the aquatic environment, and hexavalent, Cr(VI) which is toxic, carcinogenic and very soluble. Accordingly, the majority of wastewater and groundwater treatment technologies, include a stage where Cr(VI) is reduced to Cr(III), in order to remove chromium from the aqueous phase and bind the element in the form of environmentally stable solid compounds. In the absence of iron the final product is typically of the form Cr(OH)3·xH2O whereas in the presence of iron the precipitate is a mixed Fe(1-x)Crx(OH)3 phase. In this study, we report on the synthesis, characterisation and stability of mixed (Fex,Cr1-x)(OH)3 hydroxides as compared to the stability of Cr(OH)3. We established that the plain Cr(III) hydroxide, abiding to the approximate molecular formula Cr(OH)3·3H2O, was crystalline, highly soluble, i.e. unstable, with a tendency to transform into the stable amorphous hydroxide Cr(OH)3(am) phase. Mixed Fe0.75Cr0.25(OH)3 hydroxides were found to be of the ferrihydrite structure, Fe(OH)3, and we correlated their solubility to that of a solid solution formed by plain ferrihydrite and the amorphous Cr(III) hydroxide. Both our experimental results and thermodynamic calculations indicated that mixed Fe(III)-Cr(III) hydroxides are more effective enhancers of groundwater quality, in comparison to the plain amorphous or crystalline Cr(III) hydroxides, the latter found to have a solubility typically higher than 50μg/l (maximum EU permitted Cr level in drinking water), while the amorphous Cr(OH)3(am) phase was within the drinking water threshold in the range 5.7hydroxides studied were of extended stability in the 4.8

  7. Genomic analysis reveals versatile heterotrophic capacity of a potentially symbiotic sulfur-oxidizing bacterium in sponge

    KAUST Repository

    Tian, Renmao

    2014-08-29

    Sulfur-reducing bacteria (SRB) and sulfur-oxidizing bacteria (SOB) play essential roles in marine sponges. However, the detailed characteristics and physiology of the bacteria are largely unknown. Here, we present and analyse the first genome of sponge-associated SOB using a recently developed metagenomic binning strategy. The loss of transposase and virulence-associated genes and the maintenance of the ancient polyphosphate glucokinase gene suggested a stabilized SOB genome that might have coevolved with the ancient host during establishment of their association. Exclusive distribution in sponge, bacterial detoxification for the host (sulfide oxidation) and the enrichment for symbiotic characteristics (genes-encoding ankyrin) in the SOB genome supported the bacterial role as an intercellular symbiont. Despite possessing complete autotrophic sulfur oxidation pathways, the bacterium developed a much more versatile capacity for carbohydrate uptake and metabolism, in comparison with its closest relatives (Thioalkalivibrio) and to other representative autotrophs from the same order (Chromatiales). The ability to perform both autotrophic and heterotrophic metabolism likely results from the unstable supply of reduced sulfur in the sponge and is considered critical for the sponge-SOB consortium. Our study provides insights into SOB of sponge-specific clade with thioautotrophic and versatile heterotrophic metabolism relevant to its roles in the micro-environment of the sponge body. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

  8. Genomic analysis reveals versatile heterotrophic capacity of a potentially symbiotic sulfur-oxidizing bacterium in sponge.

    Science.gov (United States)

    Tian, Ren-Mao; Wang, Yong; Bougouffa, Salim; Gao, Zhao-Ming; Cai, Lin; Bajic, Vladimir; Qian, Pei-Yuan

    2014-11-01

    Sulfur-reducing bacteria (SRB) and sulfur-oxidizing bacteria (SOB) play essential roles in marine sponges. However, the detailed characteristics and physiology of the bacteria are largely unknown. Here, we present and analyse the first genome of sponge-associated SOB using a recently developed metagenomic binning strategy. The loss of transposase and virulence-associated genes and the maintenance of the ancient polyphosphate glucokinase gene suggested a stabilized SOB genome that might have coevolved with the ancient host during establishment of their association. Exclusive distribution in sponge, bacterial detoxification for the host (sulfide oxidation) and the enrichment for symbiotic characteristics (genes-encoding ankyrin) in the SOB genome supported the bacterial role as an intercellular symbiont. Despite possessing complete autotrophic sulfur oxidation pathways, the bacterium developed a much more versatile capacity for carbohydrate uptake and metabolism, in comparison with its closest relatives (Thioalkalivibrio) and to other representative autotrophs from the same order (Chromatiales). The ability to perform both autotrophic and heterotrophic metabolism likely results from the unstable supply of reduced sulfur in the sponge and is considered critical for the sponge-SOB consortium. Our study provides insights into SOB of sponge-specific clade with thioautotrophic and versatile heterotrophic metabolism relevant to its roles in the micro-environment of the sponge body.

  9. Synthesis, characterization and stability of Cr(III) and Fe(III) hydroxides

    Energy Technology Data Exchange (ETDEWEB)

    Papassiopi, N.; Vaxevanidou, K.; Christou, C.; Karagianni, E.; Antipas, G.S.E., E-mail: gantipas@metal.ntua.gr

    2014-01-15

    Highlights: • Fe(III)–Cr(III) hydroxides enhance groundwater quality better than pure Cr(III) compounds. • Crystalline Cr(OH){sub 3}·3H{sub 2}O was unstable, with a solubility higher than 50 μg/l. • Amorphous Cr(OH){sub 3}(am) was stable with a solubility lower than 50 μg/l in the range 5.7 < pH < 11. • For mixed Fe{sub 0.75}Cr{sub 0.25}(OH){sub 3}, the stability region was extended to 4.8 < pH < 13.5. -- Abstract: Chromium is a common contaminant of soils and aquifers and constitutes a major environmental problem. In nature, chromium usually exists in the form of two oxidation states, trivalent, Cr(III), which is relatively innocuous for biota and for the aquatic environment, and hexavalent, Cr(VI) which is toxic, carcinogenic and very soluble. Accordingly, the majority of wastewater and groundwater treatment technologies, include a stage where Cr(VI) is reduced to Cr(III), in order to remove chromium from the aqueous phase and bind the element in the form of environmentally stable solid compounds. In the absence of iron the final product is typically of the form Cr(OH){sub 3}·xH{sub 2}O whereas in the presence of iron the precipitate is a mixed Fe{sub (1−x)}Cr{sub x}(OH){sub 3} phase. In this study, we report on the synthesis, characterisation and stability of mixed (Fe{sub x},Cr{sub 1−x})(OH){sub 3} hydroxides as compared to the stability of Cr(OH){sub 3}. We established that the plain Cr(III) hydroxide, abiding to the approximate molecular formula Cr(OH){sub 3}·3H{sub 2}O, was crystalline, highly soluble, i.e. unstable, with a tendency to transform into the stable amorphous hydroxide Cr(OH){sub 3}(am) phase. Mixed Fe{sub 0.75}Cr{sub 0.25}(OH){sub 3} hydroxides were found to be of the ferrihydrite structure, Fe(OH){sub 3}, and we correlated their solubility to that of a solid solution formed by plain ferrihydrite and the amorphous Cr(III) hydroxide. Both our experimental results and thermodynamic calculations indicated that mixed Fe

  10. Bacterial diversity of autotrophic enriched cultures from remote, glacial Antarctic, Alpine and Andean aerosol, snow and soil samples

    Directory of Open Access Journals (Sweden)

    E. González-Toril

    2009-01-01

    Full Text Available Four different communities and one culture of autotrophic microbial assemblages were obtained by incubation of samples collected from high elevation snow in the Alps (Mt. Blanc area and the Andes (Nevado Illimani summit, Bolivia, from Antarctic aerosol (French station Dumont d'Urville and a maritime Antarctic soil (King George Island, South Shetlands, Uruguay Station Artigas, in a minimal mineral (oligotrophic media. Molecular analysis of more than 200 16S rRNA gene sequences showed that all cultured cells belong to the Bacteria domain. Phylogenetic comparison with the currently available rDNA database allowed sequences belonging to Proteobacteria Alpha-, Beta- and Gamma-proteobacteria, Actinobacteria and Bacteroidetes phyla to be identified. The Andes snow culture was the richest in bacterial diversity (eight microorganisms identified and the marine Antarctic soil the poorest (only one. Snow samples from Col du Midi (Alps and the Andes shared the highest number of identified microorganisms (Agrobacterium, Limnobacter, Aquiflexus and two uncultured Alphaproteobacteria clones. These two sampling sites also shared four sequences with the Antarctic aerosol sample (Limnobacter, Pseudonocardia and an uncultured Alphaproteobacteriaclone. The only microorganism identified in the Antarctica soil (Brevundimonas sp. was also detected in the Antarctic aerosol. Most of the identified microorganisms had been detected previously in cold environments, marine sediments soils and rocks. Air current dispersal is the best model to explain the presence of very specific microorganisms, like those identified in this work, in environments very distant and very different from each other.

  11. Autotrophic and heterotrophic metabolism of microbial planktonic communities in an oligotrophic coastal marine ecosystem: seasonal dynamics and episodic events

    Directory of Open Access Journals (Sweden)

    O. Bonilla-Findji

    2010-11-01

    Full Text Available A 18 month study was performed in the Bay of Villefranche to assess the episodic and seasonal variation of autotrophic and heterotrophic ecosystem processes. A typical spring bloom was encountered, where maximum of gross primary production (GPP was followed by maxima of bacterial respiration (BR and production (BP. The trophic balance (heterotrophy vs. autotrophy of the system did not exhibit any seasonal trend although a strong intra-annual variability was observed. On average, the community tended to be net heterotrophic with a GPP threshold for a balanced metabolism of 1.1 μmol O2 l−1 d−1. Extended forest fires in summer 2003 and a local episodic upwelling in July 2003 likely supplied orthophosphate and nitrate into the system. These events were associated with an enhanced bacterioplankton production (up to 2.4-fold, respiration (up to 4.5-fold and growth efficiency (up to 2.9-fold but had no effect on GPP. A Sahara dust wet deposition event in February 2004 stimulated bacterial abundance, production and growth efficiency but not GPP. Our study suggests that short-term disturbances such as wind-driven upwelling, forest fires and Sahara dust depositions can have a significant but previously not sufficiently considered influence on phytoplankton- and bacterioplankton-mediated ecosystem functions and can modify or even mask the seasonal dynamics. The study also indicates that atmospheric deposition of nutrients and particles not only impacts phytoplankton but also bacterioplankton and could, at times, also shift systems stronger towards net heterotrophy.

  12. Response of heterotrophic and autotrophic microbial plankton to inorganic and organic inputs along a latitudinal transect in the Atlantic Ocean

    Directory of Open Access Journals (Sweden)

    S. Martínez-García

    2010-01-01

    Full Text Available Atmospheric nutrient deposition into the open ocean increased over the past decades as a result of human activity and water-soluble organic nitrogen accounts for up to 30% of the total nitrogen inputs. The effects of inorganic and/or organic nutrient inputs on phytoplankton and heterotrophic bacteria have never been concurrently assessed in open ocean oligotrophic communities over a wide spatial gradient. We studied the effects of potentially limiting inorganic (nitrate, ammonium, phosphate, silica and organic nutrient (glucose, aminoacids inputs on microbial plankton biomass, community structure and metabolism in five microcosm experiments conducted along a latitudinal transect in the Atlantic Ocean (from 26° N to 29° S.

    Primary production rates increased up to 1.8-fold. Bacterial respiration and microbial community respiration increased up to 14.3 and 12.7-fold, respectively. Bacterial production and bacterial growth efficiency increased up to 58.8-fold and 2.5-fold, respectively. The largest increases were measured after mixed inorganic-organic nutrients additions. Changes in microbial plankton biomass were small as compared with those in metabolic rates. A north to south increase in the response of heterotrophic bacteria was observed, which could be related to a latitudinal gradient in phosphorus availability. Our results suggest that organic matter inputs associated with atmospheric deposition into the Atlantic Ocean will result in a predominantly heterotrophic versus autotrophic response and in increases in bacterial growth efficiency, particularly in the Southern Hemisphere. Subtle differences in the initial environmental and biological conditions are likely to result in differential microbial responses to inorganic and organic matter inputs.

  13. A Genetic System for Clostridium ljungdahlii: a Chassis for Autotrophic Production of Biocommodities and a Model Homoacetogen

    Energy Technology Data Exchange (ETDEWEB)

    Leang, C; Ueki, T; Nevin, KP; Lovley, DR

    2013-02-04

    Methods for genetic manipulation of Clostridium ljungdahlii are of interest because of the potential for production of fuels and other biocommodities from carbon dioxide via microbial electrosynthesis or more traditional modes of autotrophy with hydrogen or carbon monoxide as the electron donor. Furthermore, acetogenesis plays an important role in the global carbon cycle. Gene deletion strategies required for physiological studies of C. ljungdahlii have not previously been demonstrated. An electroporation procedure for introducing plasmids was optimized, and four different replicative origins for plasmid propagation in C. ljungdahlii were identified. Chromosomal gene deletion via double-crossover homologous recombination with a suicide vector was demonstrated initially with deletion of the gene for FliA, a putative sigma factor involved in flagellar biogenesis and motility in C. ljungdahlii. Deletion of fliA yielded a strain that lacked flagella and was not motile. To evaluate the potential utility of gene deletions for functional genomic studies and to redirect carbon and electron flow, the genes for the putative bifunctional aldehyde/alcohol dehydrogenases, adhE1 and adhE2, were deleted individually or together. Deletion of adhE1, but not adhE2, diminished ethanol production with a corresponding carbon recovery in acetate. The double deletion mutant had a phenotype similar to that of the adhE1-deficient strain. Expression of adhE1 in trans partially restored the capacity for ethanol production. These results demonstrate the feasibility of genetic investigations of acetogen physiology and the potential for genetic manipulation of C. ljungdahlii to optimize autotrophic biocommodity production.

  14. Balance Between Autotrophic and Heterotrophic Components and Processes in Microbenthic Communities of Sandy Sediments: A Field Study

    Science.gov (United States)

    Sundbäck, Kristina; Nilsson, Per; Nilsson, Claes; Jönsson, Benno

    1996-12-01

    The microscopic community of a microtidal sandy sediment on the Swedish west coast was studied in situat two depths (0·5 and 4 m) on four occasions (January, April, August and October). Biomass of microalgae, bacteria, ciliates and meiofauna, as well as primary and bacterial productivity, were quantified. Meiofaunal grazing on algae and bacteria was measured simultaneously by radiolabelling intact sediment cores. Autotrophic biomass dominated the microbial community at both depths and on all sampling occasions, accounting for 47-87% of the microbial biomass. Meiofauna contributed 10-47%, while bacteria and ciliates together made up less than 6%. The microflora was dominated by attached (epipsammic) diatoms, but occasional ' blooms ' of motile species occurred. Vital cells of planktonic diatoms contributed to benthic algal biomass in spring. Primary productivity exceeded bacterial productivity in April and August at both depths, while the balance was reversed in October and January. Meiofauna grazed between 2 and 12% of the algal biomass per day, and between 0·3 and 37% of the bacterial biomass. Almost an order of magnitude more algal (17-138 mg C m -2) than bacterial (0·1-33 mg C m -2) carbon was grazed daily. At the shallow site, primary productivity always exceeded grazing rates on algae, whereas at the deeper site, grazing exceeded primary productivity in October and January. Bacterial productivity exceeded grazing at both depths on all four occasions. Thus, meiofaunal grazing seasonally controlled microalgal, but not bacterial, biomass. These results suggest that, during summer, only a minor fraction (food web ' through meiofauna. During spring and autumn, however, a much larger fraction (≈30-60%) of primary production may pass through meiofauna. During winter, meiofaunal grazing is a less important link in the shallow zone, but at sublittoral depths, algal productivity may be limiting, and meiofauna depend on other food sources, such as bacteria and

  15. Reflexion M\\"ossbauer analysis of the in situ oxidation products hydroxycarbonate green rust

    CERN Document Server

    Naille, Sebastien; Louber, Didier; Jean, Paul Moulin; Ruby, Christian; 10.1088/1742-6596/217/1/012084

    2010-01-01

    The purpose of this study is to determine the nature of the oxidation products of FeII-III hydroxycarbonate FeII4FeIII2(OH)12CO3~3H2O (green rust GR(CO32-)) by using the miniaturised M\\"ossbauer spectrometer MIMOS II. Two M\\"ossbauer measurements methods are used: method (i) with green rust pastes coated with glycerol and spread into Plexiglas sample holders, and method (ii) with green rust pastes in the same sample holders but introduced into a gas-tight cell with a beryllium window under a continuous nitrogen flow. Method (ii) allows us to follow the continuous deprotonation of GR(CO32-) into the fully ferric deprotonated form FeIII6O4(OH)8CO3~3H2O by adding the correct amount of H2O2, without any further oxidation or degradation of the samples.

  16. Green rust formation during Fe(II) oxidation by the nitrate-reducing Acidovorax sp. strain BoFeN1.

    Science.gov (United States)

    Pantke, Claudia; Obst, Martin; Benzerara, Karim; Morin, Guillaume; Ona-Nguema, Georges; Dippon, Urs; Kappler, Andreas

    2012-02-07

    Green rust (GR) as highly reactive iron mineral potentially plays a key role for the fate of (in)organic contaminants, such as chromium or arsenic, and nitroaromatic compounds functioning both as sorbent and reductant. GR forms as corrosion product of steel but is also naturally present in hydromorphic soils and sediments forming as metastable intermediate during microbial Fe(III) reduction. Although already suggested to form during microbial Fe(II) oxidation, clear evidence for GR formation during microbial Fe(II) oxidation was lacking. In the present study, powder XRD, synchrotron-based XAS, Mössbauer spectroscopy, and TEM demonstrated unambiguously the formation of GR as an intermediate product during Fe(II) oxidation by the nitrate-reducing Fe(II)-oxidizer Acidovorax sp. strain BoFeN1. The spatial distribution and Fe redox-state of the precipitates associated with the cells were visualized by STXM. It showed the presence of extracellular Fe(III), which can be explained by Fe(III) export from the cells or extracellular Fe(II) oxidation by an oxidant diffusing from the cells. Moreover, GR can be oxidized by nitrate/nitrite and is known as a catalyst for oxidation of dissolved Fe(II) by nitrite/nitrate and may thus contribute to the production of extracellular Fe(III). As a result, strain BoFeN1 may contribute to Fe(II) oxidation and nitrate reduction both by an direct enzymatic pathway and an indirect GR-mediated process.

  17. Size-dependent magnetic properties of iron oxide nanoparticles

    Science.gov (United States)

    Patsula, Vitalii; Moskvin, Maksym; Dutz, Silvio; Horák, Daniel

    2016-01-01

    Uniform iron oxide nanoparticles in the size range from 10 to 24 nm and polydisperse 14 nm iron oxide particles were prepared by thermal decomposition of Fe(III) carboxylates in the presence of oleic acid and co-precipitation of Fe(II) and Fe(III) chlorides by ammonium hydroxide followed by oxidation, respectively. While the first method produced hydrophobic oleic acid coated particles, the second one formed hydrophilic, but uncoated, nanoparticles. To make the iron oxide particles water dispersible and colloidally stable, their surface was modified with poly(ethylene glycol) and sucrose, respectively. Size and size distribution of the nanoparticles was determined by transmission electron microscopy, dynamic light scattering and X-ray diffraction. Surface of the PEG-functionalized and sucrose-modified iron oxide particles was characterized by Fourier transform infrared (FT-IR) and Raman spectroscopy and thermogravimetric analysis (TGA). Magnetic properties were measured by means of vibration sample magnetometry and specific absorption rate in alternating magnetic fields was determined calorimetrically. It was found, that larger ferrimagnetic particles showed higher heating performance than smaller superparamagnetic ones. In the transition range between superparamagnetism and ferrimagnetism, samples with a broader size distribution provided higher heating power than narrow size distributed particles of comparable mean size. Here presented particles showed promising properties for a possible application in magnetic hyperthermia.

  18. The nature of the intermediates in the reactions of Fe(III)- and Mn(III)-microperoxidase-8 with H(2)O(2): a rapid kinetics study.

    Science.gov (United States)

    Primus, Jean-Louis; Grunenwald, Sylvie; Hagedoorn, Peter-Leon; Albrecht-Gary, Anne-Marie; Mandon, Dominique; Veeger, Cees

    2002-02-20

    Kinetic studies were performed with microperoxidase-8 (Fe(III)MP-8), the proteolytic breakdown product of horse heart cytochrome c containing an octapeptide linked to an iron protoporphyrin IX. Mn(III) was substituted for Fe(III) in Mn(III)MP-8. The mechanism of formation of the reactive metal-oxo and metal-hydroperoxo intermediates of M(III)MP-8 upon reaction of H(2)O(2) with Fe(III)MP-8 and Mn(III)MP-8 was investigated by rapid-scan stopped-flow spectroscopy and transient EPR. Two steps (k(obs1) and k(obs2)) were observed and analyzed for the reaction of hydrogen peroxide with both catalysts. The plots of k(obs1) as function of [H(2)O(2)] at pH 8.0 and pH 9.1 for Fe(III)MP-8, and at pH 10.2 and pH 10.9 for Mn(III)MP-8, exhibit saturation kinetics, which reveal the accumulation of an intermediate. Double reciprocal plots of 1/k(obs1) as function of 1/[H(2)O(2)] at different pH values reveal a competitive effect of protons in the oxidation of M(III)MP-8. This effect of protons is confirmed by the linear dependence of 1/k(obs1) on [H(+)] showing that k(obs1) increases with the pH. The UV-visible spectra of the intermediates formed at the end of the first step (k(obs1)) exhibit a spectrum characteristic of a high-valent metal-oxo intermediate for both catalysts. Transient EPR of Mn(III)MP-8 incubated with an excess of H(2)O(2), at pH 11.5, shows the detection of a free radical signal at g approximately equal to 2 and of a resonance at g approximately equal to 4 characteristic of a Mn(IV) (S = 3/2) species. On the basis of these results, the following mechanism is proposed: (i) M(III)MP-8-OH(2) is deprotonated to M(III)MP-8-OH in a rapid preequilibrium step, with a pK(a) = 9.2 +/- 0.9 for Fe(III)MP-8 and a pK(a) = 11.2 +/- 0.3 for Mn(III)MP-8; (ii) M(III)MP-8-OH reacts with H(2)O(2) to form Compound 0, M(III)MP8-OOH, with a second-order rate constant k(1) = (1.3 +/- 0.6) x 10(6) M(-1) x s(-1) for Fe(III)MP-8 and k(1) = (1.6 +/- 0.9) x 10(5) M(-1) x s(-1) for Mn

  19. Role of microbial Fe(III) reduction and solution chemistry in aggregation and settling of suspended particles in the Mississippi River Delta plain, Louisiana, USA

    Science.gov (United States)

    Jaisi, D.P.; Ji, S.; Dong, H.; Blake, R.E.; Eberl, D.D.; Kim, J.

    2008-01-01

    River-dominated delta areas are primary sites of active biogeochemical cycling, with productivity enhanced by terrestrial inputs of nutrients. Particle aggregation in these areas primarily controls the deposition of suspended particles, yet factors that control particle aggregation and resulting sedimentation in these environments are poorly understood. This study was designed to investigate the role of microbial Fe(III) reduction and solution chemistry in aggregation of suspended particles in the Mississippi Delta. Three representative sites along the salinity gradient were selected and sediments were collected from the sediment-water interface. Based on quantitative mineralogical analyses 88-89 wt.% of all minerals in the sediments are clays, mainly smectite and illite. Consumption of SO421 and the formation of H2S and pyrite during microbial Fe(III) reduction of the non-sterile sediments by Shewanella putrefaciens CN32 in artificial pore water (APW) media suggest simultaneous sulfate and Fe(III) reduction activity. The pHPZNPC of the sediments was ??? 3.5 and their zeta potentials at the sediment-water interface pH (6.9-7.3) varied from -35 to -45 mV, suggesting that both edges and faces of clay particles have negative surface charge. Therefore, high concentrations of cations in pore water are expected to be a predominant factor in particle aggregation consistent with the Derjaguin-Landau-Verwey-Overbeek (DLVO) theory. Experiments on aggregation of different types of sediments in the same APW composition revealed that the sediment with low zeta potential had a high rate of aggregation. Similarly, addition of external Fe(II) (i.e. not derived from sediments) was normally found to enhance particle aggregation and deposition in all sediments, probably resulting from a decrease in surface potential of particles due to specific Fe(II) sorption. Scanning and transmission electron microscopy (SEM, TEM) images showed predominant face-to-face clay aggregation in native

  20. Leaching of pyrite by acidophilic heterotrophic iron-oxidizing bacteria in pure and mixed cultures

    Energy Technology Data Exchange (ETDEWEB)

    Bacelar-Nicolau, P.; Johnson, D.B. [Univ. of Wales, Bangor (United Kingdom). School of Biological Sciences

    1999-02-01

    Seven strains of heterotrophic iron-oxidizing acidophilic bacteria were examined to determine their abilities to promote oxidative dissolution of pyrite (FeS{sub 2}) when they were grown in pure cultures and in mixed cultures with sulfur-oxidizing Thiobacillus spp. Only one of the isolates (strain T-24) oxidized pyrite when it was grown in pyrite-basal salts medium. However, when pyrite-containing cultures were supplemented with 0.02% (wt/vol) yeast extract, most of the isolates oxidized pyrite, and one (strain T-24) promoted rates of mineral dissolution similar to the rates observed with the iron-oxidizing autotroph Thiobacillus ferroxidans. Pyrite oxidation by another isolate (strain T-21) occurred in cultures containing between 0.005 and 0.05% (wt/vol) yeast extract but was completely inhibited in cultures containing 0.5% yeast extract. Ferrous iron was also needed for mineral dissolution by the iron-oxidizing heterotrophs, indicating that these organisms oxidize pyrite via the indirect mechanism. Mixed cultures of three isolates (strains T-21, T-232, and T-24) and the sulfur-oxidizing autotroph Thiobacillus thiooxidans promoted pyrite dissolution; since neither strains T-21 and T-23 nor T. thiooxidans could oxidize this mineral in yeast extract-free media, this was a novel example of bacterial synergism. Mixed cultures of strains T-21 and T-23 and the sulfur-oxidizing mixotroph Thiobacillus acidophilus also oxidized pyrite but to a lesser extent than did mixed cultures containing T. thiooxidans. Pyrite leaching by strain T -23 grown in an organic compound-rich medium and incubated either shaken or unshaken was also assessed. The potential environmental significance of iron-oxidizing heterotrophs in accelerating pyrite oxidation is discussed.

  1. Interactions Between Fe(III)-oxides and Fe(III)-phyllosilicates During Microbial Reduction 2: Natural Subsurface Sediments

    Energy Technology Data Exchange (ETDEWEB)

    Wu, T.; Griffin, A. M.; Gorski, C. A.; Shelobolina, E. S.; Xu, H.; Kukkadapu, R. K.; Roden, E. E.

    2016-04-19

    Dissimilatory microbial reduction of solid-phase Fe(III)-oxides and Fe(III)-bearing phyllosilicates (Fe(III)-phyllosilicates) is an important process in anoxic soils, sediments, and subsurface materials. Although various studies have documented the relative extent of microbial reduction of single-phase Fe(III)-oxides and Fe(III)-phyllosilicates, detailed information is not available on interaction between these two processes in situations where both phases are available for microbial reduction. The goal of this research was to use the model dissimilatory iron-reducing bacterium (DIRB) Geobacter sulfurreducens to study Fe(III)-oxide vs. Fe(III)-phyllosilicate reduction in a range of subsurface materials and Fe(III)-oxide stripped versions of the materials. Low temperature (12K) Mossbauer spectroscopy was used to infer changes in the relative abundances of Fe(III)-oxide, Fe(III)-phyllosilicate, and phyllosilicate-associated Fe(II) (Fe(II)-phyllosilicate). A Fe partitioning model was employed to analyze the fate of Fe(II) and assess the potential for abiotic Fe(II)-catalyzed reduction of Fe(III)-phyllosilicates. The results showed that in most cases Fe(III)- oxide utilization dominated (70-100 %) bulk Fe(III) reduction activity, and that electron transfer from oxide-derived Fe(II) played only a minor role (ca. 10-20 %) in Fe partitioning. In addition, the extent of Fe(III)-oxide reduction was positively correlated to surface area-normalized cation exchange capacity and the phyllosilicate-Fe(III)/total Fe(III) ratio, which suggests that the phyllosilicates in the natural sediments promoted Fe(III)-oxide reduction by binding of oxide-derived Fe(II), thereby enhancing Fe(III)-oxide reduction by reducing or delaying the inhibitory effect that Fe(II) accumulation on oxide and DIRB cell surfaces has on Fe(III)-oxide reduction. In general our results suggest that although Fe(III)-oxide reduction is likely to dominate bulk Fe(III) reduction in most subsurface sediments, Fe

  2. Catalytic wet peroxide oxidation of p-nitrophenol by Fe (III) supported on resin.

    Science.gov (United States)

    Liou, Rey-May; Chen, Shih-Hsiung; Huang, Cheng-Hsien; Lai, Cheng-Lee; Shih, C Y; Chang, Jing-Song; Hung, Mu-Ya

    2010-01-01

    Fe(III) supported on resin (Fe(III)-resin) as an effective catalyst for peroxide oxidation was prepared and applied for the degradation of p-nitrophenol (PNP). Catalytic wet peroxide oxidation (CWPO) experiments with hydrogen peroxide as oxidant were performed in a batch rector with p-nitrophenol as the model pollutant. Under given conditions (PNP concentration 500 mg/L, H(2)O(2) 0.1 M, 80°C, resin dosage 0.6% g/mL), p-nitrophenol was almost completely removed, corresponding to an 84% of COD removal. It was found that the reaction temperature, oxidant concentration. and initial pH of solution significantly affected both p-nitrophenol conversion and COD removal by oxidation. It can be inferred from the experiments that Fe(III) supported on resin was an effective catalyst in the mineralization of p-nitrophenol. In an acidic environment of oxidation, the leaching test showed that there was only a slight leaching effect on the activity of catalytic oxidation. It was also confirmed by the aging test of catalysts in the oxidation.

  3. Hotspots of anaerobic ammonia oxidation in land - freshwater interfaces

    DEFF Research Database (Denmark)

    Zhu, Guibing; Wang, Shanyun; Wang, Weidong;

    2013-01-01

    For decades, the conversion of organic nitrogen to dinitrogen gas by heterotrophic bacteria, termed heterotrophic denitrification, was assumed to be the main pathway of nitrogen loss in natural ecosystems. Recently, however, autotrophic bacteria have been shown to oxidize ammonium in the absence...... of oxygen, yielding dinitrogen gas. This process, termed anammox, accounts for over 50% of nitrogen loss in marine ecosystems1–5. However, the significance of anammox in freshwater ecosystems has remained uncertain 6,7. Here, we use molecular and isotopic techniques to monitor anammox activity in sediments...

  4. Reduction of aqueous transition metal species on the surfaces of Fe(II)-containing oxides

    Science.gov (United States)

    White, A.F.; Peterson, M.L.

    1996-01-01

    Experimental studies demonstrate that structural Fe(II) in magnetite and ilmenite heterogeneously reduce aqueous ferric, cupric, vanadate, and chromate ions at the oxide surfaces over a pH range of 1-7 at 25??C. For an aqueous transition metal m, such reactions are 3[Fe2+Fe3+2]O4(magnetite) + 2/nmz ??? 4[Fe3+2]O3(maghemite) + Fe2+ + 2/nmz-n and 3[Fe2+Ti]O3(ilmenite) + 2/nmz ??? Fe3+2Ti3O9(pseudorutile) + Fe2+ + 2/nmz-n, where z is the valance state and n is the charge transfer number. The half cell potential range for solid state oxidation [Fe(II)] ??? [Fe(III)] is -0.34 to -0.65 V, making structural Fe(II) a stronger reducing agent than aqueous Fe2+ (-0.77 V). Reduction rates for aqueous metal species are linear with time (up to 36 h), decrease with pH, and have rate constants between 0.1 and 3.3 ?? 10-10 mol m-2 s-1. Iron is released to solution both from the above reactions and from dissolution of the oxide surface. In the presence of chromate, Fe2+ is oxidized homogeneously in solution to Fe3+. X-ray photoelectron spectroscopy (XPS) denotes a Fe(III) oxide surface containing reduced Cr(III) and V(IV) species. Magnetite and ilmenite electrode potentials are insensitive to increases in divalent transition metals including Zn(II), Co(II), Mn(II), and Ni(II) and reduced V(IV) and Cr(III) but exhibit a log-linear concentration-potential response to Fe(III) and Cu(II). Complex positive electrode responses occur with increasing Cr(VI) and V(V) concentrations. Potential dynamic scans indicate that the high oxidation potential of dichromate is capable of suppressing the cathodic reductive dissolution of magnetite. Oxide electrode potentials are determined by the Fe(II)/Fe(III) composition of the oxide surface and respond to aqueous ion potentials which accelerate this oxidation process. Natural magnetite sands weathered under anoxic conditions are electrochemically reactive as demonstrated by rapid chromate reduction and the release of aqueous Fe(III) to experimental

  5. Mechanism of Selenite Removal by a Mixed Adsorbent Based on Fe–Mn Hydrous Oxides Studied Using X-ray Absorption Spectroscopy

    KAUST Repository

    Chubar, Natalia

    2014-11-18

    © 2014 American Chemical Society. Selenium cycling in the environment is greatly controlled by various minerals, including Mn and Fe hydrous oxides. At the same time, such hydrous oxides are the main inorganic ion exchangers suitable (on the basis of their chemical nature) to sorb (toxic) anions, separating them from water solutions. The mechanism of selenite adsorption by the new mixed adsorbent composed of a few (amorphous and crystalline) phases [maghemite, MnCO3, and X-ray amorphous Fe(III) and Mn(III) hydrous oxides] was studied by extended X-ray absorption fine structure (EXAFS) spectroscopy [supported by Fourier transform infrared (FTIR) and X-ray diffraction (XRD) data]. The complexity of the porous adsorbent, especially the presence of the amorphous phases of Fe(III) and Mn(III) hydrous oxides, is the main reason for its high selenite removal performance demonstrated by batch and column adsorption studies shown in the previous work. Selenite was bound to the material via inner-sphere complexation (via oxygen) to the adsorption sites of the amorphous Fe(III) and Mn(III) oxides. This anion was attracted via bidentate binuclear corner-sharing coordination between SeO3 2- trigonal pyramids and both FeO6 and MnO6 octahedra; however, the adsorption sites of Fe(III) hydrous oxides played a leading role in selenite removal. The contribution of the adsorption sites of Mn(III) oxide increased as the pH decreased from 8 to 6. Because most minerals have a complex structure (they are seldom based on individual substances) of various crystallinity, this work is equally relevant to environmental science and environmental technology because it shows how various solid phases control cycling of chemical elements in the environment.

  6. Sequential dark-photo fermentation and autotrophic microalgal growth for high-yield and CO{sub 2}-free biohydrogen production

    Energy Technology Data Exchange (ETDEWEB)

    Lo, Yung-Chung [Department of Chemical Engineering, National Cheng Kung University, Tainan 701 (China); Chen, Chun-Yen [Department of Chemical Engineering, National Cheng Kung University, Tainan 701 (China); Sustainable Environment Research Center, National Cheng Kung University, Tainan (China); Lee, Chi-Mei [Department of Environmental Engineering, National Chung Hsing University, Taichung (China); Chang, Jo-Shu [Department of Chemical Engineering, National Cheng Kung University, Tainan 701 (China); Sustainable Environment Research Center, National Cheng Kung University, Tainan (China); Center for Biosciences and Biotechnology, National Cheng Kung University, Tainan (China)

    2010-10-15

    Dark fermentation, photo fermentation, and autotrophic microalgae cultivation were integrated to establish a high-yield and CO{sub 2}-free biohydrogen production system by using different feedstock. Among the four carbon sources examined, sucrose was the most effective for the sequential dark (with Clostridium butyricum CGS5) and photo (with Rhodopseudomonas palutris WP3-5) fermentation process. The sequential dark-photo fermentation was stably operated for nearly 80 days, giving a maximum H{sub 2} yield of 11.61 mol H{sub 2}/mol sucrose and a H{sub 2} production rate of 673.93 ml/h/l. The biogas produced from the sequential dark-photo fermentation (containing ca. 40.0% CO{sub 2}) was directly fed into a microalga culture (Chlorella vulgaris C-C) cultivated at 30 C under 60 {mu}mol/m{sup 2}/s illumination. The CO{sub 2} produced from the fermentation processes was completely consumed during the autotrophic growth of C. vulgaris C-C, resulting in a microalgal biomass concentration of 1999 mg/l composed mainly of 48.0% protein, 23.0% carbohydrate and 12.3% lipid. (author)

  7. Antifungal activity of extracts from endophytic fungi associated with Smallanthus maintained in vitro as autotrophic cultures and as pot plants in the greenhouse.

    Science.gov (United States)

    Rosa, Luiz H; Tabanca, Nurhayat; Techen, Natascha; Pan, Zhiqiang; Wedge, David E; Moraes, Rita M

    2012-10-01

    The endophytic fungal assemblages associated with Smallanthus sonchifolius (Poepp.) H. Rob. and Smallanthus uvedalius (L.) Mack. ex Small growing in vitro autotrophic cultures and in the greenhouse were identified and evaluated for their ability to produce bioactive compounds. A total of 25 isolates were recovered that were genetically closely related to species of the genera Bionectria , Cladosporium , Colletotrichum , Fusarium , Gibberella , Hypocrea , Lecythophora , Nigrospora , Plectosphaerella , and Trichoderma . The endophytic assemblages of S. sonchifolius presented a greater diversity than the group isolated from S. uvedalius and demonstrated the presence of dominant generalist fungi. Extracts of all fungi were screened against the fungal plant pathogens. Ten extracts (41.6%) displayed antifungal activities; some of them had a broad antifungal activity. The phylotypes Lecythophora sp. 1, Lecythophora sp. 2, and Fusarium oxysporum were isolated from in vitro autotrophic cultures and displayed antifungal activity. The presence of bioactive endophytic fungi within S. sonchifolius and S. uvedalius suggests an ecological advantage against pathogenic attacks. This study revealed reduced numbers of endophytes in association with both Smallanthus species in controlled cultivation conditions compared with the endophytic communities of hosts collected in the wild environments. Even as reduced endophytic communities, these fungi continue to provide chemical protection for the host.

  8. Hydrogen Photoevolution Indicates an Increase in the Antenna Size of Photosystem I in Chlamydobotrys stellata during Transition from Autotrophic to Photoheterotrophic Nutrition.

    Science.gov (United States)

    Boichenko, V A; Wiessner, W; Klimov, V V; Mende, D; Demeter, S

    1992-09-01

    The changes in the light-harvesting antenna size of photosystem I were investigated in the green alga Chlamydobotrys stellata during transition from autotrophic to photoheterotrophic nutrition by measuring the light-saturation behavior of hydrogen evolution following single turnover flashes. It was found that during autotrophic-to-photoheterotrophic transition the antenna size of photosystem I increased from 180 to 250 chlorophyll. The chlorophyll (a + b)/P700 ratio decreased from 800 to 550. The electron transport of photosystem I measured from reduced 2,6-dichloro-phenolindophenol to methylviologen was accelerated 1.4 times. In the 77K fluorescence spectra, the photosystem II fluorescence yield was considerably lowered relative to the photosystem I fluorescence yield. It is suggested that the increased light-harvesting capacity and redistribution of absorbed excitation energy in favor of photosystem I is a response of photoheterotrophic algae to meet the ATP demand for acetate metabolism by efficient photosystem I cyclic electron transport when the noncyclic photophosphorylation is inhibited by CO(2) deficiency.

  9. Production Response and Digestive Enzymatic Activity of the Pacific White Shrimp Litopenaeus vannamei (Boone, 1931 Intensively Pregrown in Microbial Heterotrophic and Autotrophic-Based Systems

    Directory of Open Access Journals (Sweden)

    Manuel J. Becerra-Dórame

    2012-01-01

    Full Text Available Shrimp postlarvae were reared into different microcosm systems without water exchange; a traditional system based on simple fertilization to improve microalgae concentration (control, an autotrophic system (AS based on the promotion of biofloc and biofilm by the addition of fertilizer and artificial substrates and a heterotrophic system (HS based on the promotion of heterotrophic bacteria by the addition of nitrogenous and carbonaceous sources and artificial substrates. Better growth performance and survival were registered in shrimp from the AS and HS compared to the control. Feed conversion ratios were below 0.7 for all treatments, but AS and HS were significantly lower than the control. Regarding digestive performance, no significant differences were observed for trypsin, amylase and lipase activities among AS and control shrimp; however, shrimp from HS showed a higher trypsin and amylase activities, suggesting a higher digestive activity caused by the presence of microbial bioflocs. The presence of biofilm and bioflocs composed by either autotrophic or heterotrophic organisms in combination with formulated feed improved the growth performance and survival of shrimp. Apparently, such combination fits the nutritional requirements of shrimp.

  10. Production response and digestive enzymatic activity of the Pacific white shrimp Litopenaeus vannamei (Boone, 1931) intensively pregrown in microbial heterotrophic and autotrophic-based systems.

    Science.gov (United States)

    Becerra-Dórame, Manuel J; Martínez-Porchas, Marcel; Martínez-Córdova, Luis R; Rivas-Vega, Martha E; Lopez-Elias, José A; Porchas-Cornejo, Marco A

    2012-01-01

    Shrimp postlarvae were reared into different microcosm systems without water exchange; a traditional system based on simple fertilization to improve microalgae concentration (control), an autotrophic system (AS) based on the promotion of biofloc and biofilm by the addition of fertilizer and artificial substrates and a heterotrophic system (HS) based on the promotion of heterotrophic bacteria by the addition of nitrogenous and carbonaceous sources and artificial substrates. Better growth performance and survival were registered in shrimp from the AS and HS compared to the control. Feed conversion ratios were below 0.7 for all treatments, but AS and HS were significantly lower than the control. Regarding digestive performance, no significant differences were observed for trypsin, amylase and lipase activities among AS and control shrimp; however, shrimp from HS showed a higher trypsin and amylase activities, suggesting a higher digestive activity caused by the presence of microbial bioflocs. The presence of biofilm and bioflocs composed by either autotrophic or heterotrophic organisms in combination with formulated feed improved the growth performance and survival of shrimp. Apparently, such combination fits the nutritional requirements of shrimp.

  11. Extraction and separation of Nd(III), Sm(III), Dy(III), Fe(III), Ni(II), and Cs(I) from concentrated chloride solutions with N,N,N',N'-tetra(2-ethylhexyl) diglycolamide as new extractant

    Institute of Scientific and Technical Information of China (English)

    E.A. Mowafy; D. Mohamed

    2015-01-01

    The feasibility of using N,N,N',N'-tetra(2-ethylhexyl)diglycolamide (TEHDGA) in 75 vol.% n-dodecane-25 vol.% n-octanol as agents for the extraction and separation of Nd(III), Sm(III), Dy(III), Fe(III), Ni(II), and Cs(I) from concentrated chlo-ride solution was investigated. Different extraction behaviors were obtained towards rare earth elements (REE) studied and Fe(III), Ni(II) and Cs(I). Efficient separation of Nd(III), Sm(III) and Dy(III) from Fe(III), Ni(II), and Cs(I) was achieved by TEHDGA, depending on the HCl, HNO3 or H2SO4 concentration. A systematic investigation was carried out on the detailed extraction prop-erties of Nd(III), Sm(III), and Dy(III) with TEHDGA from chloride media. The IR spectra of the extracted species were investi-gated.

  12. A pentanuclear iron catalyst designed for water oxidation

    Science.gov (United States)

    Okamura, Masaya; Kondo, Mio; Kuga, Reiko; Kurashige, Yuki; Yanai, Takeshi; Hayami, Shinya; Praneeth, Vijayendran K. K.; Yoshida, Masaki; Yoneda, Ko; Kawata, Satoshi; Masaoka, Shigeyuki

    2016-02-01

    Although the oxidation of water is efficiently catalysed by the oxygen-evolving complex in photosystem II (refs 1 and 2), it remains one of the main bottlenecks when aiming for synthetic chemical fuel production powered by sunlight or electricity. Consequently, the development of active and stable water oxidation catalysts is crucial, with heterogeneous systems considered more suitable for practical use and their homogeneous counterparts more suitable for targeted, molecular-level design guided by mechanistic understanding. Research into the mechanism of water oxidation has resulted in a range of synthetic molecular catalysts, yet there remains much interest in systems that use abundant, inexpensive and environmentally benign metals such as iron (the most abundant transition metal in the Earth’s crust and found in natural and synthetic oxidation catalysts). Water oxidation catalysts based on mononuclear iron complexes have been explored, but they often deactivate rapidly and exhibit relatively low activities. Here we report a pentanuclear iron complex that efficiently and robustly catalyses water oxidation with a turnover frequency of 1,900 per second, which is about three orders of magnitude larger than that of other iron-based catalysts. Electrochemical analysis confirms the redox flexibility of the system, characterized by six different oxidation states between FeII5 and FeIII5; the FeIII5 state is active for oxidizing water. Quantum chemistry calculations indicate that the presence of adjacent active sites facilitates O-O bond formation with a reaction barrier of less than ten kilocalories per mole. Although the need for a high overpotential and the inability to operate in water-rich solutions limit the practicality of the present system, our findings clearly indicate that efficient water oxidation catalysts based on iron complexes can be created by ensuring that the system has redox flexibility and contains adjacent water-activation sites.

  13. Acid–base equilibria of the Zn(II and Fe(III complexes with condensation products of 2-acetylpyridine and the dihydrazide of oxalic and malonic acid

    Directory of Open Access Journals (Sweden)

    DUŠAN SLADIĆ

    2009-03-01

    Full Text Available Acid–base equilibria of Zn(II and Fe(III complexes with N',N'2-bis[(1E-1-(2-pyridylethylidene]ethanedihydrazide (ligand L1 and N',N'2-bis[(1E-1-(2-pyridylethylidene]propanedihydrazide (ligand L2, i.e., [Fe(L1Cl2(H2O], [Fe(L2Cl(H2O]2+, [Zn(L1(H2O3]+ and [Zn(L2(H2O2]2+, which expressed cytotoxic activity, were investigated in aqueous media. The equilibrium constants were determined potentiometrically at 25 °C at a constant ionic strength of 0.10 mol/dm3 (Na2SO4. The results showed that at pH < 8 both the Fe(III complexes studied here have three, while [Zn(L1(H2O3]+ and [Zn(L2(H2O2]2+ have one and two titratable protons, respectively. Based on the obtained values for the equilibrium constants, protonation schemes of the examined complexes are proposed.

  14. Effect of Fe(III) on 1,1,2,2-tetrachloroethane degradation and vinyl chloride accumulation in wetland sediments of the Aberdeen proving ground

    Science.gov (United States)

    Jones, E.J.P.; Voytek, M.A.; Lorah, M.M.

    2004-01-01

    1,1,2,2-Tetrachloroethane (TeCA) contaminated groundwater at the Aberdeen Proving Ground discharges through an anaerobic wetland in West Branch Canal Creek, MD, where dechlorination occurred. Two microbially mediated pathways, dichloroelimination and hydrogenolysis, account for most of the TeCA degradation at this site. The dichloroelimination pathways led to the formation of vinyl chloride (VC), a recalcitrant carcinogen of great concern. The effect of adding Fe(III) to TeCA-amended microcosms of wetland sediment was studied. Differences were identified in the TeCA degradation pathway between microcosms treated with amorphous ferric oxyhydroxide (AFO-treated) and untreated (no AFO) microcosms. TeCA degradation was accompanied by a lower accumulation of VC in AFO-treated microcosms than no AFO microcosms. The microcosm incubations and subsequent experiments with the microcosm materials showed that AFO treatment resulted in lower production of VC by shifting TeCA degradation from dichloroelimination pathways to production of a greater proportion of chlorinated ethane products, and decreasing the microbial capability to produce VC from 1,2-dichloroethylene. VC degradation was not stimulated in the presence of Fe(III). Rather, VC degradation occurred readily under methanogenic conditions and was inhibited under Fe(III)-reducing conditions.

  15. Synthesis, spectroscopic, thermal and anticancer studies of metal-antibiotic chelations: Ca(II), Fe(III), Pd(II) and Au(III) chloramphenicol complexes

    Science.gov (United States)

    Al-Khodir, Fatima A. I.; Refat, Moamen S.

    2016-09-01

    Four Ca(II), Fe(III), Pd(II) and Au(III) complexes of chloramphenicol drug have been synthesized and well characterized using elemental analyses, (infrared, electronic, and 1H-NMR) spectra, magnetic susceptibility measurement, and thermal analyses. Infrared spectral data show that the chloramphenicol drug coordinated to Ca(II), Pd(II) and Au(III) metal ions through two hydroxyl groups with 1:1 or 1:2 M ratios, but Fe(III) ions chelated towards chloramphenicol drug via the oxygen and nitrogen atoms of amide group with 1:2 ratio based on presence of keto↔enol form. The X-ray powder diffraction (XRD), scanning electron microscope (SEM) and transmission electron microscopy (TEM) techniques were used to identify the nano-size particles of both iron(III) and gold(III) chloramphenicol complexes. The antimicrobial assessments of the chloramphenicol complexes were scanned and collected the results against of some kind of bacteria and fungi. The cytotoxic activity of the gold(III) complex was tested against the human colon carcinoma (HCT-116) and human hepatocellular carcinoma (HepG-2) tumor cell lines.

  16. Electron transfer and atom exchange between aqueous Fe(II) and structural Fe(III) in clays. Role in U and Hg(II) transformations

    Energy Technology Data Exchange (ETDEWEB)

    Scherer, Michelle [Univ. of Iowa, Iowa City, IA (United States)

    2016-08-31

    During this project, we investigated Fe electron transfer and atom exchange between aqueous Fe(II) and structural Fe(III) in clay minerals. We used selective chemical extractions, enriched Fe isotope tracer experiments, computational molecular modeling, and Mössbauer spectroscopy. Our findings indicate that structural Fe(III) in clay minerals is reduced by aqueous Fe(II) and that electron transfer occurs when Fe(II) is sorbed to either basal planes and edge OH-groups of clay mineral. Findings from highly enriched isotope experiments suggest that up to 30 % of the Fe atoms in the structure of some clay minerals exhanges with aqueous Fe(II). First principles calculations using a small polaron hopping approach suggest surprisingly fast electron mobility at room temperature in a nontronite clay mineral and are consistent with temperature dependent Mössbauer data Fast electron mobility suggests that electrons may be able to conduct through the mineral fast enough to enable exchange of Fe between the aqueous phase and clay mineral structure. over the time periods we observed. Our findings suggest that Fe in clay minerals is not as stable as previously thought.

  17. INVESTIGATION OF THE TRANSFORMATION OF URANIUM UNDER IRON-REDUCING CONDITIONS: REDUCTION OF UVI BY BIOGENIC FEII/FEIII HYDROXIDE (GREEN RUST)

    Energy Technology Data Exchange (ETDEWEB)

    O' Loughlin, Edward J.; Scherer, Michelle M.; Kemner, Kenneth M.

    2006-12-31

    The recent identification of green rusts (GRs) as products of the reduction of FeIII oxyhydroxides by dissimilatory iron-reducing bacteria, coupled with the ability of synthetic (GR) to reduce UVI species to insoluble UO2, suggests that biogenic green rusts (BioGRs) may play an important role in the speciation (and thus mobility) of U in FeIII-reducing environments. The objective of our research was to examine the potential for BioGR to affect the speciation of U under FeIII-reducing conditions. To meet this objective, we designed and executed a hypothesis-driven experimental program to identify key factors leading to the formation of BioGRs as products of dissimilatory FeIII reduction, to determine the key factors controlling the reduction of UVI to UIV by GRs, and to identify the resulting U-bearing mineral phases. The results of this research significantly increase our understanding of the coupling of biotic and abiotic processes with respect to the speciation of U in iron-reducing environments. In particular, the reduction of UVI to UIV by BioGR with the subsequent formation of U-bearing mineral phases may be effective for immobilizing U in suboxic subsurface environments. This information has direct applications to contaminant transport modeling and bioremediation engineering for natural or enhanced in situ remediation of subsurface contamination.

  18. Effects of pulsed atrazine exposures on autotrophic community structure, biomass, and production in field-based stream mesocosms.

    Science.gov (United States)

    King, Ryan S; Brain, Richard A; Back, Jeffrey A; Becker, Christopher; Wright, Moncie V; Djomte, Valerie Toteu; Scott, W Casan; Virgil, Steven R; Brooks, Bryan W; Hosmer, Alan J; Chambliss, C Kevin

    2016-03-01

    The authors performed a multiple-pulsed atrazine experiment to measure responses of autotrophic endpoints in outdoor stream mesocosms. The experiment was designed to synthetically simulate worst-case atrazine chemographs from streams in agricultural catchments to achieve 60-d mean concentrations of 0 μg/L (control), 10 μg/L, 20 μg/L, and 30 μg/L. The authors dosed triplicate streams with pulses of 0 μg/L, 50 μg/L, 100 μg/L, and 150 μg/L atrazine for 4 d, followed by 7 d without dosing. This 11-d cycle occurred 3 times, followed by a recovery (untreated) period from day 34 to day 60. Mean ± standard error 60-d atrazine concentrations were 0.07 ± 0.03 μg/L, 10.7 ± 0.05 μg/L, 20.9 ± 0.24 μg/L, and 31.0 ± 0.17 μg/L for the control, 10-μg/L, 20-μg/L, and 30-μg/L treatments, respectively. Multivariate analyses revealed that periphyton and phytoplankton community structure did not differ among treatments on any day of the experiment, including during the atrazine pulses. Control periphyton biomass in riffles was higher immediately following the peak of the first atrazine pulse and remained slightly higher than some of the atrazine treatments on most days through the peak of the last pulse. However, periphyton biomass was not different among treatments at the end of the present study. Phytoplankton biomass was not affected by atrazine. Metaphyton biomass in pools was higher in the controls near the midpoint of the present study and remained higher on most days for the remainder of the study. Ceratophyllum demersum, a submersed macrophyte, biomass was higher in controls than in 20-μg/L and 30-μg/L treatments before pulse 3 but was not different subsequent to pulse 3 through the end of the present study. Maximum daily dissolved oxygen (DO, percentage of saturation) declined during each pulse in approximate proportion to magnitude of dose but rapidly converged among treatments after the third pulse. However

  19. Ecophysiology and Comparative Genomics of Nitrosomonas mobilis Ms1 Isolated from Autotrophic Nitrifying Granules of Wastewater Treatment Bioreactor

    OpenAIRE

    SoeMyat Thandar; Norisuke Ushiki; Hirotsugu Fujitani; Yuji Sekiguchi; Satoshi Tsuneda

    2016-01-01

    Ammonia-oxidizing bacteria (AOB), which oxidize ammonia to nitrite in the first step of nitrification, play an important role in biological wastewater treatment systems. Nitrosomonas mobilis is an important and dominant AOB in various wastewater treatment systems. However, the detailed physiological and genomic properties of N. mobilis have not been thoroughly investigated because of limited success isolating pure cultures. This study investigated the key physiological characteristics of N. m...

  20. Autotrophic fixation of geogenic CO2 by microorganisms contributes to soil organic matter formation and alters isotope signatures in a wetland mofette

    Directory of Open Access Journals (Sweden)

    M. E. Nowak

    2015-09-01

    Full Text Available To quantify the contribution of autotrophic microorganisms to organic matter formation (OM in soils, we investigated natural CO2 vents (mofettes situated in a wetland in NW Bohemia (Czech Republic. Mofette soils had higher SOM concentrations than reference soils due to restricted decomposition under high CO2 levels. We used radiocarbon (Δ14C and stable carbon isotope ratios (δ13C to characterize SOM and its sources in two moffetes and compared it with respective reference soils, which were not influenced by geogenic CO2. The geogenic CO2 emitted at these sites is free of radiocarbon and enriched in δ13C compared to atmospheric CO2. Together, these isotopic signals allow us to distinguish C fixed by plants from C fixed by autotrophic microorganisms using their differences in δ13C discrimination. We can then estimate that up to 27 % of soil organic matter in the 0–10 cm layer of these soils was derived from microbially assimilated CO2. Isotope values of bulk SOM were shifted towards more positive δ13C and more negative Δ14C values in mofettes compared to reference soils, suggesting that geogenic CO2 emitted from the soil atmosphere is incorporated into SOM. To distinguish whether geogenic CO2 was fixed by plants or by CO2 assimilating microorganisms, we first used the proportional differences in radiocarbon and δ13C values to indicate the magnitude of discrimination of the stable isotopes in living plants. Deviation from this relationship was taken to indicate the presence of microbial CO2 fixation, as microbial discrimination should differ from that of plants. 13CO2-labelling experiments confirmed high activity of CO2 assimilating microbes in the top 10 cm, where δ13C values of SOM were shifted up to 2 ‰ towards more negative values. Uptake rates of microbial CO2 fixation ranged up to 1.59 ± 0.16 μg gdw−1 d−1. We inferred that the negative δ13C shift was caused by the activity of chemo-lithoautotrophic microorganisms, as

  1. Some ozone advanced oxidation processes to improve the biological removal of selected pharmaceutical contaminants from urban wastewater.

    Science.gov (United States)

    Espejo, Azahara; Aguinaco, Almudena; Amat, Ana M; Beltrán, Fernando J

    2014-01-01

    Removal of nine pharmaceutical compounds--acetaminophen (AAF), antipyrine (ANT), caffeine (CAF), carbamazepine (CRB), diclofenac (DCF), hydrochlorothiazide (HCT), ketorolac (KET), metoprolol (MET) and sulfamethoxazole (SMX)-spiked in a primary sedimentation effluent of a municipal wastewater has been studied with sequential aerobic biological and ozone advanced oxidation systems. Combinations of ozone, UVA black light and Fe(III) or Fe3O4 constituted the chemical systems. During the biological treatment (hydraulic residence time, HRT = 24 h), only AAF and CAF were completely eliminated, MET, SMX and HCT reached partial removal rates and the rest of compounds were completely refractory. With any ozone advanced oxidation process applied, the remaining pharmaceuticals disappear in less than 10 min. Fe3O4 or Fe(III) photocatalytic ozonation leads to 35% mineralization compared to 13% reached during ozonation alone after about 30-min reaction. Also, biodegradability of the treated wastewater increased 50% in the biological process plus another 150% after the ozonation processes. Both untreated and treated wastewater was non-toxic for Daphnia magna (D. magna) except when Fe(III) was used in photocatalytic ozonation. In this case, toxicity was likely due to the ferryoxalate formed in the process. Kinetic information on ozone processes reveals that pharmaceuticals at concentrations they have in urban wastewater are mainly removed through free radical oxidation.

  2. Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment.

    Science.gov (United States)

    Junier, Pilar; Molina, Verónica; Dorador, Cristina; Hadas, Ora; Kim, Ok-Sun; Junier, Thomas; Witzel, Jean-Paul; Imhoff, Johannes F

    2010-01-01

    The oxidation of ammonia plays a significant role in the transformation of fixed nitrogen in the global nitrogen cycle. Autotrophic ammonia oxidation is known in three groups of microorganisms. Aerobic ammonia-oxidizing bacteria and archaea convert ammonia into nitrite during nitrification. Anaerobic ammonia-oxidizing bacteria (anammox) oxidize ammonia using nitrite as electron acceptor and producing atmospheric dinitrogen. The isolation and cultivation of all three groups in the laboratory are quite problematic due to their slow growth rates, poor growth yields, unpredictable lag phases, and sensitivity to certain organic compounds. Culture-independent approaches have contributed importantly to our understanding of the diversity and distribution of these microorganisms in the environment. In this review, we present an overview of approaches that have been used for the molecular study of ammonia oxidizers and discuss their application in different environments.

  3. Aeration control by monitoring the microbiological activity using fuzzy logic diagnosis and control. Application to a complete autotrophic nitrogen removal reactor

    DEFF Research Database (Denmark)

    Boiocchi, Riccardo; Mauricio Iglesias, Miguel; Vangsgaard, Anna Katrine

    2015-01-01

    . This contribution describes the development of a fuzzy-logic based system for both diagnosis and control of a CANR reactor. Based on a combination of measurements of the nitrogen species concentration in the influent and in the effluent on the one hand, and insights into the activities of three distinctive...... to the reactor.The diagnosis tool was first evaluated using 100 days of real process operation data obtained from a lab-scale single-stage autotrophic nitrogen removing reactor. This evaluation revealed that the fuzzy logic diagnosis is able to provide a realistic description of the microbiological state...... of the reactor with process engineering insight analysis. An evaluation of both the diagnosis tool and the controller was done by simulating a disturbance in the influent concentration. High and steady nitrogen removal efficiency was achieved thanks to the diagnosis and control system. Finally, development...

  4. Extending the benchmark simulation model no2 with processes for nitrous oxide production and side-stream nitrogen removal

    DEFF Research Database (Denmark)

    2015-01-01

    the Complete Autotrophic Nitrogen Removal (CANR) model was used to describe the side-stream (PN/A) treatment. Comprehensive simulations were performed to assess the extended model. Steady-state simulation results revealed the following: (i) the implementation of a continuous CANR side-stream reactor has...... strategies to improve operation performance and to meet the new plant performance criteria such as minimization of greenhouse gas (in particular of nitrous oxide) emissions....

  5. Mechanistic and energetic aspects of the thermal and photochemical redox chemistry of the octanuclear cubane complexes, Fe(III)(8)(mu(4)-O(4))(mu-pyrazolate)(12)X(4) (X = Cl or Br).

    Science.gov (United States)

    Ferraudi, Guillermo; Piñero, Dalice; Chakraborty, Indranil; Raptis, Raphael G; Lappin, A Graham; Berlin, Nicholas

    2010-05-13

    The mechanisms of the thermal and photochemical redox reactions of clusters [Fe(III)(8)(mu(4)-O(4))(mu-Pz)(12)X(4)] (Pz = pyrazolate anion, X = Cl or Br) were investigated in this work. Reactions of the complexes with e(-)(sol), C(*)H(2)OH, and several powerful reducing transition metal complexes were investigated using the pulse radiolysis technique. Reaction rates of the outer-sphere electron transfer reactions with transition metal complexes had to be rationalized by invoking the formation of a [Fe(III)(7)Fe(II) '(mu(4)-O(4))(mu-Pz)(12)X(4)](-) intermediate or excited state. A transient species observed in the reaction of the e(-)(sol) with the cubanes can be either an excited state or a reaction intermediate mediating the formation of the stable product, [Fe(III)(7)Fe(II)(mu(4)-O(4))(mu-Pz)(12)X(4)](-). Photoredox reactions, characteristic of the ligand X(-) to Fe(III) charge transfer excited sates, were observed in the 350 nm steady state and 351 nm laser flash irradiations of the cubanes. Quantum yields are limited by the rapid recombination of the photofragments. The charge transfer spectroscopy of the products was rationalized on the basis of parameters derived from the thermal electron transfer reactions.

  6. Development of a C3-symmetric benzohydroxamate tripod: Trimetallic complexation with Fe(III), Cr(III) and Al(III)

    Science.gov (United States)

    Baral, Minati; Gupta, Amit; Kanungo, B. K.

    2016-06-01

    The design, synthesis and physicochemical characterization of a C3-symmetry Benzene-1,3,5-tricarbonylhydroxamate tripod, noted here as BTHA, are described. The chelator was built from a benzene as an anchor, symmetrically extended by three hydroxamate as ligating moieties, each bearing O, O donor sites. A combination of absorption spectrophotometry, potentiometry and theoretical investigations are used to explore the complexation behavior of the ligand with some trivalent metal ions: Fe(III), Cr(III), and Al(III). Three protonation constants were calculated for the ligand in a pH range of 2-11 in a highly aqueous medium (9:1 H2O: DMSO). A high rigidity in the molecular structure restricts the formation of 1:1 (M/L) metal encapsulation but shows a high binding efficiency for a 3:1 metal ligand stoichiometry giving formation constant (in β unit) 28.73, 26.13 and 19.69 for [M3L]; Mdbnd Fe(III), Al(III) and Cr(III) respectively, and may be considered as an efficient Fe-carrier. The spectrophotometric study reveals of interesting electronic transitions occurred during the complexation. BTHA exhibits a peak at 238 nm in acidic pH and with the increase of pH, a new peak appeared at 270 nm. A substantial shifting in both of the peaks in presence of the metal ions implicates a s coordination between ligand and metal ions. Moreover, complexation of BTHA with iron shows three distinct colors, violet, reddish orange and yellow in different pH, enables the ligand to be considered for the use as colorimetric sensor.

  7. Speciative Determination of Dissolved Inorganic Fe(II, Fe(III and Total Fe in Natural Waters by Coupling Cloud Point Extraction with FAAS

    Directory of Open Access Journals (Sweden)

    Ramazan GÜRKAN

    2013-12-01

    Full Text Available A new cloud point extraction (CPE method for the preconcentration of trace iron speciation in natural waters prior to determination by flame atomic absorption spectrometry (FAAS was developed in the present study. In this method, Fe(II sensitively and selectively reacts with Calcon carboxylic acid (CCA in presence of cetylpyridinium chloride (CPC yielding a hydrophobic complex at pH 10.5, which is then entrapped in surfactant-rich phase. Total Fe was accurately and reliably determined after the reduction of Fe(III to Fe(II with sulfite. The amount of Fe(III in samples was determined from the difference between total Fe and Fe(II. CPC was used not only as an auxiliary ligand in CPE, but also as sensitivity enhancement agent in FAAS. The nonionic surfactant, polyethylene glycol tert-octylphenyl ether (Triton X-114 was used as an extracting agent. The analytical variables affecting CPE efficiency were investigated in detail. The preconcentration/enhancement factors of 50 and 82 respectively, were obtained for the preconcentration of Fe(II with 50 mL solution. Under the optimized conditions, the detection limit of Fe(II in linear range of 0.2-60 μg L-1 was 0.06 μg L-1. The relative standard deviation was 2.7 % (20 μg L-1, N: 5, recoveries for Fe(II were in range of 99.0-102.0% for all water samples including certified reference materials (CRMs. In order to verify its accuracy, two CRMs were analyzed and the results obtained were statistically in good agreement with the certified values.

  8. Synthesis, physicochemical characterization, DFT calculation and biological activities of Fe(III) and Co(II)-omeprazole complexes. Potential application in the Helicobacter pylori eradication

    Science.gov (United States)

    Russo, Marcos G.; Vega Hissi, Esteban G.; Rizzi, Alberto C.; Brondino, Carlos D.; Salinas Ibañez, Ángel G.; Vega, Alba E.; Silva, Humberto J.; Mercader, Roberto; Narda, Griselda E.

    2014-03-01

    The reaction between the antiulcer agent omeprazole (OMZ) with Fe(III) and Co(II) ions was studied, observing a high ability to form metal complexes. The isolated microcrystalline solid complexes were characterized by elemental analysis, X-ray powder diffraction (XRPD), Scanning Electron Microscopy (SEM), magnetic measurements, thermal study, FTIR, UV-Visible, Mössbauer, electronic paramagnetic resonance (EPR), and DFT calculations. The metal-ligand ratio for both complexes was 1:2 determined by elemental and thermal analysis. FTIR spectroscopy showed that OMZ acts as a neutral bidentate ligand through the pyridinic nitrogen of the benzimidazole ring and the oxygen atom of the sulfoxide group, forming a five-membered ring chelate. Electronic, Mössbauer, and EPR spectra together with magnetic measurements indicate a distorted octahedral geometry around the metal ions, where the coordination sphere is completed by two water molecules. SEM and XRPD were used to characterize the morphology and the crystal nature of the complexes. The most favorable conformation for the Fe(III)-OMZ and Co(II)-OMZ complexes was obtained by DFT calculations by using B3LYP/6-31G(d)&LanL2DZ//B3LYP/3-21G(d)&LanL2DZ basis set. Studies of solubility along with the antibacterial activity against Helicobacter pylori for OMZ and its Co(II) and Fe(III) complexes are also reported. Free OMZ and both metal complexes showed antibacterial activity against H. pylori. Co(II)-OMZ presented a minimal inhibitory concentration ˜32 times lower than that of OMZ and ˜65 lower than Fe(III)-OMZ, revealing its promising potential use for the treatment of gastric pathologies associated with the Gram negative bacteria. The morphological changes observed in the cell membrane of the bacteria after the incubation with the metal-complexes were also analyzed by SEM microscopy. The antimicrobial activity of the complexes was proved by the viability test.

  9. Abiotic oxidation of pyrite by Fe(III) in acidic media and its implications for sulfur isotope measurements of lattice-bound sulfate in sediments

    Digital Repository Service at National Institute of Oceanography (India)

    Mazumdar, A.; Goldberg, T.; Strauss, H.

    generation by application of some reducing agent during sample dissolution in order to understand the truegeochemicalprocessesinvolvedinsulfurisotopiccompositionof lattice sulfate. Acknowledgments Funding for this research by the Deutsche...

  10. Oxidative removal of aqueous steroid estrogens by manganese oxides.

    Science.gov (United States)

    Xu, Lei; Xu, Chao; Zhao, Meirong; Qiu, Yuping; Sheng, G Daniel

    2008-12-01

    This study investigated the oxidative removal of steroid estrogens from water by synthetic manganese oxide (MnO2) and the factors influencing the reactions. Using 1 x 10(-5)M MnO2 at pH 4, estrone (E1), 17beta-estradiol (E2), estriol (E3) and 17alpha-ethinylestradiol (EE2), all at 4 x 10(-6)M, were rapidly removed within 220 min, indicating the effectiveness of MnO2 as an oxidizing agent towards estrogens. E2 removal increased with decreasing pH over the tested range of 4-8, due most likely to increased oxidizing power of MnO2 and a cleaner reactive surface in acidic solutions. Coexisting metal ions of 0.01 M (Cu(II), Zn(II), Fe(III) and Mn(II)) and Mn(II) released from MnO2 reduction competed with E2 for reactive sites leading to reduced E2 removal. Observed differential suppression on E2 removal may be related to different speciations of metals, as suggested by the MINTEQ calculations, and hence their different adsorptivities on MnO2. By suppressing the metal effect, humic acid substantially enhanced E2 removal. This was attributed to complexation of humic acid with metal ions. With 0.01 M ZnCl2 in solutions containing 1 mg l(-1) humic acid, the binding of humic acid for Zn(II) was determined at 251 mmol g(-1). An in vitro assay using human breast carcinoma MCF-7 cells indicated a near elimination of estrogenic activities without secondary risk of estrogen solutions treated with MnO2. Synthetic MnO2 is therefore a promising chemical agent under optimized conditions for estrogen removal from water. Metal chelators recalcitrant to MnO2 oxidation may be properly used to further enhance the MnO2 performance.

  11. Synthesis of Zn–Fe layered double hydroxides via an oxidation process and structural analysis of products

    Energy Technology Data Exchange (ETDEWEB)

    Morimoto, Kazuya, E-mail: kazuya.morimoto@aist.go.jp [Institute for Geo-Resources and Environment, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki 305-8567 (Japan); Tamura, Kenji [Environmental Remediation Materials Unit, National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki 305-0044 (Japan); Anraku, Sohtaro [Graduate School of Engineering, Hokkaido University, Kita 13 Nishi 8, Kita-ku, Sapporo 060-8628 (Japan); Sato, Tsutomu [Faculty of Engineering, Hokkaido University, Kita 13 Nishi 8, Kita-ku, Sapporo 060-8628 (Japan); Suzuki, Masaya [Institute for Geo-Resources and Environment, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki 305-8567 (Japan); Yamada, Hirohisa [Environmental Remediation Materials Unit, National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki 305-0044 (Japan)

    2015-08-15

    The synthesis of Zn–Fe(III) layered double hydroxides was attempted, employing different pathways using either Fe(II) or Fe(III) species together with Zn as the initial reagents. The product derived from the synthesis employing Fe(II) was found to transition to a Zn–Fe(III) layered double hydroxides phase following oxidation process. In contrast, the product obtained with Fe(III) did not contain a layered double hydroxides phase, but rather consisted of simonkolleite and hydrous ferric oxide. It was determined that the valency of the Fe reagent used in the initial synthesis affected the generation of the layered double hydroxides phase. Fe(II) species have ionic radii and electronegativities similar to those of Zn, and therefore are more likely to form trioctahedral hydroxide layers with Zn species. - Graphical abstract: The synthesis of Zn–Fe(III) layered double hydroxides was attempted, employing different pathways using either Fe(II) or Fe(III) species together with Zn as the initial reagents. - Highlights: • Iron valency affected the generation of Zn–Fe layered double hydroxides. • Zn–Fe layered double hydroxides were successfully synthesized using Fe(II). • Fe(II) species were likely to form trioctahedral hydroxide layers with Zn species.

  12. Uptake of iodide in the marine haptophyte Isochrysis sp. (T.ISO) driven by iodide oxidation.

    Science.gov (United States)

    van Bergeijk, Stef A; Hernández Javier, Laura; Heyland, Andreas; Manchado, Manuel; Pedro Cañavate, José

    2013-08-01

    Uptake of iodide was studied in the marine microalga Isochrysis sp. (isol. Haines, T.ISO) during short-term incubations with radioactive iodide ((125) I(-) ). Typical inhibitors of the sodium/iodide symporter (NIS) did not inhibit iodide uptake, suggesting that iodide is not taken up through this transport protein, as is the case in most vertebrate animals. Oxidation of iodide was found to be an essential step for its uptake by T.ISO and it seemed likely that hypoiodous acid (HOI) was the form of iodine taken up. Uptake of iodide was inhibited by the addition of thiourea and of other reducing agents, like L-ascorbic acid, L-glutathione and L-cysteine and increased after the addition of oxidized forms of the transition metals Fe and Mn. The simultaneous addition of both hydrogen peroxide (H2 O2 ) and a known iodide-oxidizing myeloperoxidase (MPO) significantly increased iodine uptake, but the addition of H2 O2 or MPO separately, had no effect on uptake. This confirms the observation that iodide is oxidized prior to uptake, but it puts into doubt the involvement of H2 O2 excretion and membrane-bound or extracellular haloperoxidase activity of T.ISO. The increase of iodide uptake by T.ISO upon Fe(III) addition suggests the nonenzymatic oxidation of iodide by Fe(III) in a redox reaction and subsequent influx of HOI. This is the first report on the mechanism of iodide uptake in a marine microalga.

  13. Bioalteration of synthetic Fe(III)-, Fe(II)-bearing basaltic glasses and Fe-free glass in the presence of the heterotrophic bacteria strain Pseudomonas aeruginosa: Impact of siderophores

    Science.gov (United States)

    Perez, Anne; Rossano, Stéphanie; Trcera, Nicolas; Huguenot, David; Fourdrin, Chloé; Verney-Carron, Aurélie; van Hullebusch, Eric D.; Guyot, François

    2016-09-01

    This study aims to evaluate the role of micro-organisms and their siderophores in the first steps of the alteration processes of basaltic glasses in aqueous media. In this regard, three different types of glasses - with or without iron, in the reduced Fe(II) or oxidized Fe(III) states - were prepared on the basis of a simplified basaltic glass composition. Control and Pseudomonas aeruginosa inoculated experiments were performed in a buffered (pH 6.5) nutrient depleted medium to stimulate the production of the pyoverdine siderophore. Results show that the presence of P. aeruginosa has an effect on the dissolution kinetics of all glasses as most of the calculated elemental release rates are increased compared to sterile conditions. Reciprocally, the composition of the glass in contact with P. aeruginosa has an impact on the bacterial growth and siderophore production. As an essential nutrient for this microbial strain, Fe notably appears to play a central role during biotic experiments. Its presence in the glass stimulates the bacterial growth and minimizes the synthesis of pyoverdine. Moreover the initial Fe2+/Fe3+ ratio in the glasses modulates this synthesis, as pyoverdine is not detected at all in the system in contact with Fe(III)-bearing glass. Finally, the dissolution rates appear to be correlated to siderophore concentrations as they increase with respect to sterile experiments in the order Fe(III)-bearing glass < Fe(II)-bearing glass < Fe-free glass. This increase is attributed to complexation reactions between siderophores and Fe or Al for Fe(II)-bearing glass or Fe-free glass, respectively. The dissolution of an Fe-free glass is significantly improved in the presence of bacteria, as initial dissolution rates are increased by a factor of 3. This study attests to the essential role of siderophores in the P. aeruginosa-promoted dissolution processes of basaltic glasses as well as to the complex relationships between the nutritional potential of the glass and

  14. Subsurface Uranium Fate and Transport: Integrated Experiments and Modeling of Coupled Biogeochemical Mechanisms of Nanocrystalline Uraninite Oxidation by Fe(III)-(hydr)oxides - Project Final Report

    Energy Technology Data Exchange (ETDEWEB)

    Peyton, Brent M. [Montana State Univ., Bozeman, MT (United States); Timothy, Ginn R. [Univ. of California, Davis, CA (United States); Sani, Rajesh K. [South Dakota School of Mines and Technology, Rapid City, SD (United States)

    2013-08-14

    Subsurface bacteria including sulfate reducing bacteria (SRB) reduce soluble U(VI) to insoluble U(IV) with subsequent precipitation of UO2. We have shown that SRB reduce U(VI) to nanometer-sized UO2 particles (1-5 nm) which are both intra- and extracellular, with UO2 inside the cell likely physically shielded from subsequent oxidation processes. We evaluated the UO2 nanoparticles produced by Desulfovibrio desulfuricans G20 under growth and non-growth conditions in the presence of lactate or pyruvate and sulfate, thiosulfate, or fumarate, using ultrafiltration and HR-TEM. Results showed that a significant mass fraction of bioreduced U (35-60%) existed as a mobile phase when the initial concentration of U(VI) was 160 µM. Further experiments with different initial U(VI) concentrations (25 - 900 M) in MTM with PIPES or bicarbonate buffers indicated that aggregation of uraninite depended on the initial concentrations of U(VI) and type of buffer. It is known that under some conditions SRB-mediated UO2 nanocrystals can be reoxidized (and thus remobilized) by Fe(III)-(hydr)oxides, common constituents of soils and sediments. To elucidate the mechanism of UO2 reoxidation by Fe(III) (hydr)oxides, we studied the impact of Fe and U chelating compounds (citrate, NTA, and EDTA) on reoxidation rates. Experiments were conducted in anaerobic batch systems in PIPES buffer. Results showed EDTA significantly accelerated UO2 reoxidation with an initial rate of 9.5 M day-1 for ferrihydrite. In all cases, bicarbonate increased the rate and extent of UO2 reoxidation with ferrihydrite. The highest rate of UO2 reoxidation occurred when the chelator promoted UO2 and Fe(III) (hydr)oxide dissolution as demonstrated with EDTA. When UO2 dissolution did not occur, UO2 reoxidation likely proceeded through an aqueous Fe(III) intermediate as observed for both NTA and

  15. Ecophysiology and Comparative Genomics of Nitrosomonas mobilis Ms1 Isolated from Autotrophic Nitrifying Granules of Wastewater Treatment Bioreactor.

    Science.gov (United States)

    Thandar, Soe Myat; Ushiki, Norisuke; Fujitani, Hirotsugu; Sekiguchi, Yuji; Tsuneda, Satoshi

    2016-01-01

    Ammonia-oxidizing bacteria (AOB), which oxidize ammonia to nitrite in the first step of nitrification, play an important role in biological wastewater treatment systems. Nitrosomonas mobilis is an important and dominant AOB in various wastewater treatment systems. However, the detailed physiological and genomic properties of N. mobilis have not been thoroughly investigated because of limited success isolating pure cultures. This study investigated the key physiological characteristics of N. mobilis Ms1, which was previously isolated into pure culture from the nitrifying granules of wastewater treatment bioreactor. The pure culture of N. mobilis Ms1 was cultivated in liquid mineral medium with 30 mg-N L(-1) (2.14 mM) of ammonium at room temperature under dark conditions. The optimum growth of N. mobilis Ms1 occurred at 27°C and pH 8, with a maximum growth rate of 0.05-0.07 h(-1), which corresponded to a generation time of 10-14 h. The half saturation constant for ammonium uptake rate and the maximum ammonium uptake rate of N. mobilis Ms1 were 30.70 ± 0.51 μM NH4(+) and 0.01 ± 0.002 pmol NH4(+) cells(-1) h(-1), respectively. N. mobilis Ms1 had higher ammonia oxidation activity than N. europaea in this study. The oxygen uptake activity kinetics of N. mobilis Ms1 were Km(O2) = 21.74 ± 4.01 μM O2 and V max(O2) = 0.06 ± 0.02 pmol O2 cells(-1) h(-1). Ms1 grew well at ammonium and NaCl concentrations of up to 100 and 500 mM, respectively. The nitrite tolerance of N. mobilis Ms1 was extremely high (up to 300 mM) compared to AOB previously isolated from activated sludge and wastewater treatment plants. The average nucleotide identity between the genomes of N. mobilis Ms1 and other Nitrosomonas species indicated that N. mobilis Ms1 was distantly related to other Nitrosomonas species. The organization of the genes encoding protein inventory involved in ammonia oxidation and nitrifier denitrification processes were different from other Nitrosomonas species. The current

  16. Ecophysiology and Comparative Genomics of Nitrosomonas mobilis Ms1 Isolated from Autotrophic Nitrifying Granules of Wastewater Treatment Bioreactor

    Directory of Open Access Journals (Sweden)

    SoeMyat Thandar

    2016-11-01

    Full Text Available Ammonia-oxidizing bacteria (AOB, which oxidize ammonia to nitrite in the first step of nitrification, play an important role in biological wastewater treatment systems. Nitrosomonas mobilis is an important and dominant AOB in various wastewater treatment systems. However, the detailed physiological and genomic properties of N. mobilis have not been thoroughly investigated because of limited success isolating pure cultures. This study investigated the key physiological characteristics of N. mobilis Ms1, which was previously isolated into pure culture from the nitrifying granules of wastewater treatment bioreactor. The pure culture of N. mobilis Ms1 was cultivated in liquid mineral medium with 30 mg-N L-1 (2.14 mM of ammonium at room temperature under dark conditions. The optimum growth of N. mobilis Ms1 occurred at 27°C and pH 8, with a maximum growth rate of 0.05–0.07 h-1, which corresponded to a generation time of 10–14 h. The half saturation constant for ammonium uptake rate and the maximum ammonium uptake rate of N. mobilis Ms1 were 30.70±0.51 μM NH4+ and 0.01±0.002 pmol NH4+ cells-1 h-1, respectively. N. mobilis Ms1 had higher ammonia oxidation activity than N. europaea in this study. The oxygen uptake activity kinetics of N. mobilis Ms1 were K_(m(O_2= 21.74±4.01 μM O2 and V_(max⁡(O_2= 0.06±0.02 pmol O2 cells-1 h-1. Ms1 grew well at ammonium and NaCl concentrations of up to 100 mM and 500 mM, respectively. The nitrite tolerance of N. mobilis Ms1 was extremely high (up to 300 mM compared to AOB previously isolated from activated sludge and wastewater treatment plants. The average nucleotide identity between the genomes of N. mobilis Ms1 and other Nitrosomonas species indicated that N. mobilis Ms1 was distantly related to other Nitrosomonas species. The organization of the genes encoding protein inventory involved in ammonia oxidation and nitrifier denitrification processes were different from other Nitrosomonas species. The

  17. Redox cycling of Fe(II) and Fe(III) in magnetite by Fe-metabolizing bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Byrne, James; Klueglein, Nicole; Pearce, Carolyn I.; Rosso, Kevin M.; Appel, Erwin; Kappler, Andreas

    2015-03-26

    Despite the regular occurrence of both magnetite and iron-metabolizing bacteria in the same environments, it is currently unknown whether the iron(II) and iron(III) in magnetite can be cycled between different bacteria and whether or how magnetic properties are affected by this metabolic activity. We show through magnetic and spectroscopic measurements that the phototrophic Fe(II)-oxidizer Rhodopseudomonas palustris TIE-1 can oxidize solid-phase magnetite nanoparticles using light energy, leading to a decrease in the measured magnetic susceptibility (MS). This process likely occurs at the surface and is reversible in the dark by the Fe(III)-reducer Geobacter sulfurreducens resulting in an increase in MS. These results show that iron ions bound in highly crystalline mineral magnetite are bioavailable as electron stores and electron sinks under varying environmental conditions, making magnetite a potential “biogeobattery” during day/night cycles. These findings are relevant for environmental studies and reinforce the impact of microbial redox processes on the global iron cycle.

  18. A new combined process for efficient removal of Cu(II) organic complexes from wastewater: Fe(III) displacement/UV degradation/alkaline precipitation.

    Science.gov (United States)

    Xu, Zhe; Gao, Guandao; Pan, Bingcai; Zhang, Weiming; Lv, Lu

    2015-12-15

    Efficient removal of heavy metals complexed with organic ligands from water is still an important but challenging task now. Herein, a novel combined process, i.e., Fe(III)-displacement/UV degradation/alkaline precipitation (abbreviated as Fe(III)/UV/OH) was developed to remove copper-organic complexes from synthetic solution and real electroplating effluent, and other processes including alkaline precipitation, Fe(III)/OH, UV/OH were employed for comparison. By using the Fe(III)/UV/OH process, some typical Cu(II) complexes, such as Cu(II)-ethylenediaminetetraacetic acid (EDTA), Cu(II)-nitrilotriacetic acid (NTA), Cu(II)-citrate, Cu(II)-tartrate, and Cu(II)-sorbate, each at 19.2 mg Cu/L initially, were efficiently removed from synthetic solution with the residual Cu below 1 mg/L. Simultaneously, 30-48% of total organic carbon was eliminated with exception of Cu(II)-sorbate. Comparatively, the efficiency of other processes was much lower than the Fe(III)/UV/OH process. With Cu(II)-citrate as the model complex, the optimal conditions for the combined process were obtained as: initial pH for Fe(III) displacement, 1.8-5.4; molar ratio of [Fe]/[Cu], 4:1; UV irradiation, 10 min; precipitation pH, 6.6-13. The mechanism responsible for the process involved the liberation of Cu(II) ions from organic complexes as a result of Fe(III) displacement, decarboxylation of Fe(III)-ligand complexes subjected to UV irradiation, and final coprecipitation of Cu(II) and Fe(II)/Fe(III) ions. Up to 338.1 mg/L of Cu(II) in the electroplating effluent could be efficiently removed by the process with the residual Cu(II) below 1 mg/L and the removal efficiency of ∼99.8%, whereas direct precipitation by using NaOH could only result in total Cu(II) removal of ∼8.6%. In addition, sunlight could take the place of UV to achieve similar removal efficiency with longer irradiation time (90 min).

  19. Re-cultivation of Neochloris oleoabundans in exhausted autotrophic and mixotrophic media: the potential role of polyamines and free fatty acids.

    Science.gov (United States)

    Sabia, Alessandra; Baldisserotto, Costanza; Biondi, Stefania; Marchesini, Roberta; Tedeschi, Paola; Maietti, Annalisa; Giovanardi, Martina; Ferroni, Lorenzo; Pancaldi, Simonetta

    2015-12-01

    Neochloris oleoabundans (Chlorophyta) is widely considered one of the most promising microalgae for biotechnological applications. However, the large-scale production of microalgae requires large amounts of water. In this perspective, the possibility of using exhausted growth media for the re-cultivation of N. oleoabundans was investigated in order to simultaneously make the cultivation more economically feasible and environmentally sustainable. Experiments were performed by testing the following media: autotrophic exhausted medium (E+) and mixotrophic exhausted medium after cultivation with glucose (EG+) of N. oleoabundans cells grown in a 20-L photobioreactor (PBR). Both exhausted media were replenished with the same amounts of nitrate and phosphate as the control brackish medium (C). Growth kinetics, nitrate and phosphate consumption, photosynthetic pigments content, photosynthetic efficiency, cell morphology, and lipid production were evaluated. Moreover, the free fatty acid (FFA) composition of exhausted media and the polyamine (PA) concentrations of both algae and media were analyzed in order to test if some molecules, released into the medium, could influence algal growth and metabolism. Results showed that N. oleoabundans can efficiently grow in both exhausted media, if appropriately replenished with the main nutrients (E+ and EG+), especially in E+ and to the same extent as in C medium. Growth promotion of N. oleoabundans was attributed to PAs and alteration of the photosynthetic apparatus to FFAs. Taken together, results show that recycling growth medium is a suitable solution to obtain good N. oleoabundans biomass concentrations, while providing a more sustainable ecological impact on water resources.

  20. Comparative investigation on integrated vertical-flow biofilters applying sulfur-based and pyrite-based autotrophic denitrification for domestic wastewater treatment.

    Science.gov (United States)

    Kong, Zhe; Li, Lu; Feng, Chuanping; Dong, Shanshan; Chen, Nan

    2016-07-01

    Two parallel biofilters applying sulfur/pyrite-based autotrophic denitrification were investigated for removing COD, TP and TN by a coordinated process. Results demonstrated good performance by removing 86.32% vs 87.14% COD and 92.56% vs 89.65% NH4(+)-N. Biofilter with sulfur (BS) was superior on nitrate (89.74% vs 80.72%) and TN removal (83.18% vs 70.42%) while biofilter with pyrite (BP) was better on TP removal (82.58% vs 77.40%) and maintaining sulfate (27.56mgL(-1) vs 41.55mgL(-1)) and pH (7.13 vs 6.31). Water-permeable adsorbents lowered clogging risk and buffered loading. Clone library revealed reasons of diversities, pH variation and sulfate accumulation of both biofilters. Sulfur was efficient on denitrification but whose byproducts were troublesome, pyrite produced less byproduct but which was sensitive to organics. This research was the first attempt to systematically compare two promising alternatives and their merits/demerits for rural wastewater on-site treatment.

  1. Qualitative distinction of autotrophic and heterotrophic processes at the leaf level by means of triple stable isotope (C-O-H patterns

    Directory of Open Access Journals (Sweden)

    Adam eKimak

    2015-11-01

    Full Text Available Foliar samples were harvested from two oaks, a beech and a yew at the same site in order to trace the development of the leaves over an entire vegetation season. Cellulose yield and stable isotopic compositions (d13C, d18O and dD were analysed on leaf cellulose. All parameters unequivocally define a juvenile and a mature period in the foliar expansion of each species. The accompanying shifts of the d13C values are in agreement with the transition from remobilized carbohydrates (juvenile period, to current photosynthates (mature phase. While the opponent seasonal trends of d18O of blade and vein cellulose are in perfect agreement with the state-of-art mechanistic understanding, the lack of this discrepancy for dD, documented for the first time, is unexpected. For example, the offset range of 18 permil (oak veins to 57 permil (oak blades in dD may represent a process driven shift from autotrophic to heterotrophic processes. The shared pattern between blade and vein found for both oak and beech suggests an overwhelming metabolic isotope effect on dD that might be accompanied by proton transfer linked to the Calvin-cycle. These results provide strong evidence that hydrogen and oxygen are under different biochemical controls even at the leaf level.

  2. Qualitative Distinction of Autotrophic and Heterotrophic Processes at the Leaf Level by Means of Triple Stable Isotope (C–O–H) Patterns

    Science.gov (United States)

    Kimak, Adam; Kern, Zoltan; Leuenberger, Markus

    2015-01-01

    Foliar samples were harvested from two oaks, a beech, and a yew at the same site in order to trace the development of the leaves over an entire vegetation season. Cellulose yield and stable isotopic compositions (δ13C, δ18O, and δD) were analyzed on leaf cellulose. All parameters unequivocally define a juvenile and a mature period in the foliar expansion of each species. The accompanying shifts of the δ13C-values are in agreement with the transition from remobilized carbohydrates (juvenile period), to current photosynthates (mature phase). While the opponent seasonal trends of δ18O of blade and vein cellulose are in perfect agreement with the state-of-art mechanistic understanding, the lack of this discrepancy for δD, documented for the first time, is unexpected. For example, the offset range of 18 permil (oak veins) to 57 permil (oak blades) in δD may represent a process driven shift from autotrophic to heterotrophic processes. The shared pattern between blade and vein found for both oak and beech suggests an overwhelming metabolic isotope effect on δD that might be accompanied by proton transfer linked to the Calvin-cycle. These results provide strong evidence that hydrogen and oxygen are under different biochemical controls even at the leaf level. PMID:26635835

  3. Application of ultrasound and air stripping for the removal of aromatic hydrocarbons from spent sulfidic caustic for use in autotrophic denitrification as an electron donor.

    Science.gov (United States)

    Lee, Jae-Ho; Park, Jeung-Jin; Choi, Gi-Choong; Byun, Im-Gyu; Park, Tae-Joo; Lee, Tae-Ho

    2013-01-01

    Spent sulfidic caustic (SSC) produced from petroleum industry can be reused to denitrify nitrate-nitrogen via a biological nitrogen removal process as an electron donor for sulfur-based autotrophic denitrification, because it has a large amount of dissolved sulfur. However, SSC has to be refined because it also contains some aromatic hydrocarbons, typically benzene, toluene, ethylbenzene, xylene (BTEX) and phenol that are recalcitrant organic compounds. In this study, laboratory-scale ultrasound irradiation and air stripping treatment were applied in order to remove these aromatic hydrocarbons. In the ultrasound system, both BTEX and phenol were exponentially removed by ultrasound irradiation during 60 min of reaction time to give the greatest removal efficiency of about 80%. Whereas, about 95% removal efficiency of BTEX was achieved, but not any significant phenol removal, within 30 min in the air stripping system, indicating that air stripping was a more efficient method than ultrasound irradiation. However, since air stripping did not remove any significant phenol, an additional process for degrading phenol was required. Accordingly, we applied a combined ultrasound and air stripping process. In these experiments, the removal efficiencies of BTEX and phenol were improved compared to the application of ultrasound and air stripping alone. Thus, the combined ultrasound and air stripping treatment is appropriate for refining SSC.

  4. Effect of red cyst cell inoculation and iron(II) supplementation on autotrophic astaxanthin production by Haematococcus pluvialis under outdoor summer conditions.

    Science.gov (United States)

    Hong, Min-Eui; Choi, Yoon Young; Sim, Sang Jun

    2016-01-20

    The negative effect of heat stress on the autotrophic astaxanthin production by Haematococcus pluvialis has been observed during outdoor culture in summer. Under the summer conditions, the proliferation of vegetative cells was highly halted in the green stage and the inducibility in the biosynthesis of astaxanthin was partly hindered in the red stage. Herein, under outdoor summer conditions in which variations of the diurnal temperature occur, heat-stress-driven inefficient vegetative growth of H. pluvialis was highly improved by inoculating the red cyst cells; thereby, maintaining relatively moderate intracellular carotenoid levels in the green stage. Subsequently, a remarkably enhanced astaxanthin titer was successfully obtained by supplementing 50 μM iron(II) to induce the heat stress-driven Haber-Weiss reaction in the red stage. As a result, the productivity of astaxanthin in the cells cultured under summer temperature conditions (23.4-33.5 °C) using the two methods of red cell (cyst) inoculation and the iron(Fe(2+)) supplementation was increased by 147% up to 5.53 mg/L day compared with that of the cells cultured under spring temperature conditions (17.5-27.3 °C). Our technical solutions will definitely improve the annual natural astaxanthin productivity in H. pluvialis in locations confronted by hot summer weather, particularly in large-scale closed photobioreactor systems.

  5. Effect of C/N Ratio,Temperature,pH on Autotrophic Denitrification Rate with Hydrogen Gas,Iron (II) and Sodium Sulfide as Electron Donors

    Institute of Scientific and Technical Information of China (English)

    Junfeng Su; Sicheng Shao; Tinglin Huang; Fang Ma; Gang Wen; Shengchen Zheng; Kai Zhang

    2016-01-01

    Nitrate is considered to be one of the most widely present pollutants leading to eutrophication of environment. The purpose of this work was to isolate and identify new anaerobic denitrifying bacteria from reservoir sediments and utilize different electron donors for isolates to improve nitrate removal efficiency. Using traditional enrichment approach, one purified anaerobic bacterium ( Y12 ) capable of NO-3⁃N removal from sediments was obtained. The species identity of Y12 was determined via 16S rRNA gene sequence analysis to be Acinetobacter. In this work, the fastest denitrification rates were observed with ferrous iron as electron donor. And, slightly slower rates were observed with hydrogen and sodium sulfide as electron donors. However, when used hydrogen gas, ferrous iron and sodium sulfide as electron donors, C/N ratios had little effect on autotrophic denitrification rate at the initial C/N ratio from 1.5 to 9.0. Meanwhile, when made use of hydrogen gas, ferrous iron and sodium sulfide as electron donors, a maximum nitrate removal ratio of 100.00%, 91.43%and 87.99% at the temperature of 30℃, respectively. Moreover, maximum denitrification activity was observed at pH 6.0-7.0.

  6. An isotope approach based on C-13 pulse-chase labelling vs. the root trenching method to separate heterotrophic and autotrophic respiration in cultivated peatlands

    Energy Technology Data Exchange (ETDEWEB)

    Biasi, C.; Pitkamaki, A. S.; Tavi, N. M.; Koponen, H. T.; Martikainen, P. J. [Univ.of Eastern Finland, Kuopio (Finland). Dept. of Environmental Science], e-mail: christina.biasi@uef.fi

    2012-11-01

    We tested an isotope method based on C-13 pulse-chase labelling for determining the fractional contribution of soil microbial respiration to overall soil respiration in an organic soil (cutaway peatland, eastern Finland), cultivated with the bioenergy crop, reed canary grass. The plants were exposed to CO{sub 2}-13 for five hours and the label was thereafter determined in CO{sub 2} derived from the soil-root system. A two-pool isotope mixing model was used to separate sources of respiration. The isotopic approach showed that a minimum of 50% of the total CO{sub 2} originated from soil-microbial respiration. Even though the method uses undisturbed soil-plant systems, it has limitations concerning the experimental determination of the true isotopic signal of all components contributing to autotrophic respiration. A trenching experiment which was comparatively conducted resulted in a 71% fractional contribution of soil-microbial respiration. This value was likely overestimated. Further studies are needed to evaluate critically the output from these two partitioning approaches. (orig.)

  7. Fe(III) in a low-spin state in caesium bis[3-ethoxysalicylaldehyde 4-methylthiosemicarbazonato(2-)-κ3O2,N1,S]ferrate(III) methanol monosolvate.

    Science.gov (United States)

    Powell, Robyn E; Schwalbe, Carl H; Tizzard, Graham J; Koningsbruggen, Petra J van

    2014-06-01

    The synthesis and crystal structure (at 100 K) of the title compound, Cs[Fe(C11H13N3O2S2)2]·CH3OH, is reported. The asymmetric unit consists of an octahedral [Fe(III)(L)2](-) fragment, where L(2-) is 3-ethoxysalicylaldehyde 4-methylthiosemicarbazonate(2-) {systematic name: [2-(3-ethoxy-2-oxidobenzylidene)hydrazin-1-ylidene](methylamino)methanethiolate}, a caesium cation and a methanol solvent molecule. Each L(2-) ligand binds through the thiolate S, the imine N and the phenolate O atoms as donors, resulting in an Fe(III)S2N2O2 chromophore. The O,N,S-coordinating ligands are orientated in two perpendicular planes, with the O and S atoms in cis positions and the N atoms in trans positions. The Fe(III) cation is in the low-spin state at 100 K.

  8. mer-[Fe(pcq)(CN)3]-: a novel cyanide-containing building block and its application to assembling cyanide-bridged trinuclear FeIII2MnII complexes [pcq- = 8-(pyridine-2-carboxamido)quinoline anion].

    Science.gov (United States)

    Ni, Zhong-Hai; Kou, Hui-Zhong; Zhang, Li-Fang; Ni, Wei-Wei; Jiang, Yun-Bo; Cui, Ai-Li; Ribas, Joan; Sato, Osamu

    2005-12-26

    A new cyanide-containing building block K[Fe(pcq)(CN)(3)] [1; pcq(-) = 8-(pyridine-2-carboxamido)quinoline anion] containing a low-spin Fe(III) center with three cyanide groups in a meridional arrangement has been successfully designed and synthesized. Three cyanide-bridged trinuclear Fe(III)(2)Mn(II) complexes, [Fe(pcq)(CN)(3)](2)[Mn(CH(3)OH)(2)(H(2)O)(2)].2H(2)O (2), [Fe(pcq)(CN)(3)](2)[Mn(bipy)(2)].CH(3)OH.2H(2)O (3), and [Fe(pcq)(CN)(3)](2)[Mn(phen)(2)].CH(3)OH.2H(2)O (4), have been synthesized and structurally characterized. The magnetic susceptibilities of the three heterometallic complexes have been investigated.

  9. Synthesis, characterization, fluorescence and biological studies of Mn(II, Fe(III and Zn(II complexes of Schiff bases derived from Isatin and 3-substituted-4-amino-5-mercapto-1,2,4-triazoles

    Directory of Open Access Journals (Sweden)

    Sangamesh A. Patil

    2014-12-01

    Full Text Available A series of Mn(II, Fe(III and Zn(II complexes have been synthesized with Schiff bases derived from isatin and 3-substituted-4-amino-5-mercapto-1,2,4-triazole. The elemental, spectroscopic (Infrared, nuclear magnetic resonance, ultraviolet-visible, fast atom bombardment-mass, fluorescence and electrochemistry and magnetic studies suggested that the metal complexes possess octahedral geometry. The Schiff bases and their metal complexes exhibit fluorescent properties. The antimicrobial studies of Schiff bases and their metal complexes against various bacterial (Escherichia coli, Staphylococcus aureus, Pseudomonas aeruginosa and Bacillus subtilis and fungal (Aspergillus niger, and Penicillium chrysogenum species by the minimum inhibitory concentration method revealed that the metal complexes possess more healing antibacterial activities than the Schiff bases. DNA cleavage property of Mn(II, Fe(III and Zn(II complexes revealed the important role of metal ion in the biological system.

  10. Structure of Fe(III) precipitates generated by Fe(0) electrocoagulation in the presence of groundwater ions

    Science.gov (United States)

    van Genuchten, C. M.; Pena, J.; Addy, S. E.; Gadgil, A. J.

    2012-12-01

    Electrocoagulation (EC) using Fe(0) electrodes is an inexpensive and efficient technology capable of removing a variety of contaminants from water supplies. Because of its ease of use and modest electricity and Fe(0) requirements, EC has potential as an arsenic-removal technology for rural South Asia, where millions drink groundwater contaminated by arsenic. In EC, a small external voltage applied to a sacrificial Fe(0) anode in contact with an electrolyte (e.g. pumped groundwater containing arsenic) promotes the oxidative dissolution of Fe ions, which polymerize and create reactive hydrous ferric oxides (HFO) in-situ with a high affinity for binding contaminants. The chemical composition of the electrolyte influences EC performance. For example, major inorganic ions present in groundwater (e.g. Ca, Mg, P, As(V), Si) alter the pathway by which FeO6 oligomers polymerize to form crystalline Fe (oxyhydr)oxide minerals. Because the precipitate structure largely determines properties that govern the efficiency of EC systems (e.g. precipitate reactivity and colloidal stability), it is essential to understand the individual and interdependent structural effects of common groundwater ions. In this work, we integrate Fe K-edge EXAFS spectroscopy with the Pair Distribution Function (PDF) technique to create a detailed description of EC precipitate structure as a function of electrolyte chemistry. EC precipitate samples were generated in a range of individual and combined concentrations of Ca, Mg, P, As(V), and Si, encompassing most of the typical levels found in natural groundwater. Combining complementary EXAFS and PDF techniques with batch uptake experiments and general chemical reasoning, we obtain structural representations of EC precipitates that are inaccessible with any single characterization technique. Our results indicate that the presence of As(V), P, and Si oxyanions promote the formation of nanoscale material bearing similar, but not identical, intermediate

  11. Biogenic uraninite precipitation and its reoxidation by iron(III) (hydr)oxides: A reaction modeling approach

    Science.gov (United States)

    Spycher, Nicolas F.; Issarangkun, Montarat; Stewart, Brandy D.; Sevinç Şengör, S.; Belding, Eileen; Ginn, Tim R.; Peyton, Brent M.; Sani, Rajesh K.

    2011-08-01

    One option for immobilizing uranium present in subsurface contaminated groundwater is in situ bioremediation, whereby dissimilatory metal-reducing bacteria and/or sulfate-reducing bacteria are stimulated to catalyze the reduction of soluble U(VI) and precipitate it as uraninite (UO 2). This is typically accomplished by amending groundwater with an organic electron donor. It has been shown, however, that once the electron donor is entirely consumed, Fe(III) (hydr)oxides can reoxidize biogenically produced UO 2, thus potentially impeding cleanup efforts. On the basis of published experiments showing that such reoxidation takes place even under highly reducing conditions (e.g., sulfate-reducing conditions), thermodynamic and kinetic constraints affecting this reoxidation are examined using multicomponent biogeochemical simulations, with particular focus on the role of sulfide and Fe(II) in solution. The solubility of UO 2 and Fe(III) (hydr)oxides are presented, and the effect of nanoscale particle size on stability is discussed. Thermodynamically, sulfide is preferentially oxidized by Fe(III) (hydr)oxides, compared to biogenic UO 2, and for this reason the relative rates of sulfide and UO 2 oxidation play a key role on whether or not UO 2 reoxidizes. The amount of Fe(II) in solution is another important factor, with the precipitation of Fe(II) minerals lowering the Fe +2 activity in solution and increasing the potential for both sulfide and UO 2 reoxidation. The greater (and unintuitive) UO 2 reoxidation by hematite compared to ferrihydrite previously reported in some experiments can be explained by the exhaustion of this mineral from reaction with sulfide. Simulations also confirm previous studies suggesting that carbonate produced by the degradation of organic electron donors used for bioreduction may significantly increase the potential for UO 2 reoxidation through formation of uranyl carbonate aqueous complexes.

  12. Physiology, Fe(II) oxidation, and Fe mineral formation by a marine planktonic cyanobacterium grown under ferruginous conditions

    Science.gov (United States)

    Swanner, Elizabeth; Wu, Wenfang; Hao, Likai; Wuestner, Marina; Obst, Martin; Moran, Dawn; McIlvin, Matthew; Saito, Mak; Kappler, Andreas

    2015-10-01

    Evidence for Fe(II) oxidation and deposition of Fe(III)-bearing minerals from anoxic or redox-stratified Precambrian oceans has received support from decades of sedimentological and geochemical investigation of Banded Iron Formations (BIF). While the exact mechanisms of Fe(II) oxidation remains equivocal, reaction with O2 in the marine water column, produced by cyanobacteria or early oxygenic phototrophs, was likely. In order to understand the role of cyanobacteria in the deposition of Fe(III) minerals to BIF, we must first know how planktonic marine cyanobacteria respond to ferruginous (anoxic and Fe(II)-rich) waters in terms of growth, Fe uptake and homeostasis, and Fe mineral formation. We therefore grew the common marine cyanobacterium Synechococcus PCC 7002 in closed bottles that began anoxic, and contained Fe(II) concentrations that span the range of possible concentrations in Precambrian seawater. These results, along with cell suspension experiments, indicate that Fe(II) is likely oxidized by this strain via chemical oxidation with oxygen produced during photosynthesis, and not via any direct enzymatic or photosynthetic pathway. Imaging of the cell-mineral aggregates with scanning electron microscopy (SEM) and confocal laser scanning microscopy (CLSM) are consistent with extracellular precipitation of Fe(III) (oxyhydr)oxide minerals, but that >10% of Fe(III) sorbs to cell surfaces rather than precipitating. Proteomic experiments support the role of reactive oxygen species (ROS) in Fe(II) toxicity to Synechococcus PCC 7002. The proteome expressed under low Fe conditions included multiple siderophore biosynthesis and siderophore and Fe transporter proteins, but most siderophores are not expressed during growth with Fe(II). These results provide a mechanistic and quantitative framework for evaluating the geochemical consequences of perhaps life’s greatest metabolic innovation, i.e. the evolution and activity of oxygenic photosynthesis, in ferruginous

  13. Impacts of ferrate oxidation on natural organic matter and disinfection byproduct precursors.

    Science.gov (United States)

    Jiang, Yanjun; Goodwill, Joseph E; Tobiason, John E; Reckhow, David A

    2016-06-01

    This study investigated the effectiveness of ferrate (Fe(VI)) oxidation in combination with ferric chloride coagulation on the removal of natural organic matter (NOM) and disinfection byproduct (DBP) precursors. Twelve natural waters were collected and four treatment scenarios were tested at bench-scale. Results showed that intermediate-ferrate treatment (i.e., coagulation and particle removal followed by ferrate oxidation) was most effective followed by pre-ferrate treatment (i.e., ferrate oxidation followed by coagulation and particle removal (conventional treatment)) or conventional treatment alone (i.e., no oxidation), and the least effective was ferrate oxidation alone (i.e., no coagulation). At typical doses, direct ferrate oxidation of raw water decreased DBP formation potentials (DBPFPs) by about 30% for trihalomethanes (THMs), 40% for trihaloacetic acids (THAAs), 10% for dihaloacetic acids (DHAAs), 30% for dihaloacetonitriles (DHANs), and 5% for haloketones (HKs). The formation potential of chloropicrin (CP) consistently increased after direct ferrate oxidation. Pre-ferrate followed by conventional treatment was similar to conventional treatment alone for NOM and DBP precursor removal. Ferrate pre-oxidation had positive effects on subsequent coagulation/particle removal for THM and THAA precursor removal and may allow the use of lower coagulant doses due to the Fe(III) introduced by ferrate decomposition. On the other hand, intermediate-ferrate resulted in substantially improved removal of NOM and DBP precursors, which can be attributed to initial removal by coagulation and particle removal, leaving precursors that are particularly susceptible to oxidation by ferrate. The Fe(III) resulting from ferrate decay during intermediate-ferrate process was primarily present as particulate iron and could be effectively removed by filtration.

  14. Influence of organics and silica on Fe(II) oxidation rates and cell-mineral aggregate formation by the green-sulfur Fe(II)-oxidizing bacterium Chlorobium ferrooxidans KoFox - Implications for Fe(II) oxidation in ancient oceans

    Science.gov (United States)

    Gauger, Tina; Byrne, James M.; Konhauser, Kurt O.; Obst, Martin; Crowe, Sean; Kappler, Andreas

    2016-06-01

    Most studies on microbial phototrophic Fe(II) oxidation (photoferrotrophy) have focused on purple bacteria, but recent evidence points to the importance of green-sulfur bacteria (GSB). Their recovery from modern ferruginous environments suggests that these photoferrotrophs can offer insights into how their ancient counterparts grew in Archean oceans at the time of banded iron formation (BIF) deposition. It is unknown, however, how Fe(II) oxidation rates, cell-mineral aggregate formation, and Fe-mineralogy vary under environmental conditions reminiscent of the geological past. To address this, we studied the Fe(II)-oxidizer Chlorobium ferrooxidans KoFox, a GSB living in co-culture with the heterotrophic Geospirillum strain KoFum. We investigated the mineralogy of Fe(III) metabolic products at low/high light intensity, and in the presence of dissolved silica and/or fumarate. Silica and fumarate influenced the crystallinity and particle size of the produced Fe(III) minerals. The presence of silica also enhanced Fe(II) oxidation rates, especially at high light intensities, potentially by lowering Fe(II)-toxicity to the cells. Electron microscopic imaging showed no encrustation of either KoFox or KoFum cells with Fe(III)-minerals, though weak associations were observed suggesting co-sedimentation of Fe(III) with at least some biomass via these aggregates, which could support diagenetic Fe(III)-reduction. Given that GSB are presumably one of the most ancient photosynthetic organisms, and pre-date cyanobacteria, our findings, on the one hand, strengthen arguments for photoferrotrophic activity as a likely mechanism for BIF deposition on a predominantly anoxic early Earth, but, on the other hand, also suggest that preservation of remnants of Fe(II)-oxidizing GSB as microfossils in the rock record is unlikely.

  15. Electrochemical studies of DNA interaction and antimicrobial activities of MnII, FeIII, CoII and NiII Schiff base tetraazamacrocyclic complexes

    Science.gov (United States)

    Kumar, Anuj; Vashistha, Vinod Kumar; Tevatia, Prashant; Singh, Randhir

    2017-04-01

    Tetraazamacrocyclic complexes of MnII, FeIII, CoII and NiII have been synthesized by template method. These tetraazamacrocycles have been analyzed with various techniques like molar conductance, IR, UV-vis, mass spectral and cyclic voltammetric studies. On the basis of all these studies, octahedral geometry has been assigned to these tetraazamacrocyclic complexes. The DNA binding properties of these macrocyclic complexes have been investigated by electronic absorption spectra, fluorescence spectra, cyclic voltammetric and differential pulse voltammetric studies. The cyclic voltammetric data showed that ipc and ipa were effectively decreased in the presence of calf thymus DNA, which is a strong evidence for the interaction of these macrocyclic complexes with the calf thymus DNA (ct-DNA). The heterogeneous electron transfer rate constant found in the order: KCoII > KNiII > KMnII which indicates that CoII macrocyclic complex has formed a strong intercalated intermediate. The Stern-Volmer quenching constant (KSV) and voltammetric binding constant were found in the order KSV(CoII) > KSV(NiII) > KSV(MnII) and K+(CoII) > K+(NiII) > K+(MnII) which shows that CoII macrocyclic complex exhibits the high interaction affinity towards ct-DNA by the intercalation binding. Biological studies of the macrocyclic complexes compared with the standard drug like Gentamycin, have shown antibacterial activities against E. coli, P. aeruginosa, B. cereus, S. aureus and antifungal activity against C. albicans.

  16. Cr(III), Fe(III) and Co(III) complexes of tetradentate (ONNO) Schiff base ligands: Synthesis, characterization, properties and biological activity

    Science.gov (United States)

    Keskioğlu, Eren; Gündüzalp, Ayla Balaban; Çete, Servet; Hamurcu, Fatma; Erk, Birgül

    2008-08-01

    A series of metal complexes were synthesized from equimolar amounts of Schiff bases: 1,4-bis[3-(2-hydroxy-1-naphthaldimine)propyl]piperazine (bappnaf) and 1,8-bis[3-(2-hydroxy-1-naphthaldimine)- p-menthane (damnaf) with metal chlorides. All of synthesized compounds were characterized by elemental analyses, spectral (UV-vis, IR, 1H- 13C NMR, LC-MS) and thermal (TGA-DTA) methods, magnetic and conductance measurements. Schiff base complexes supposed in tetragonal geometry have the general formula [M(bappnaf or damnaf)]Cl· nH 2O, where M = Cr(III), Co(III) and n = 2, 3. But also Fe(III) complexes have octahedral geometry by the coordination of two water molecules and the formula is [Fe(bappnaf or damnaf)(H 2O) 2]Cl. The changes in the selected vibration bands in FT-IR indicate that Schiff bases behave as (ONNO) tetradentate ligands and coordinate to metal ions from two phenolic oxygen atoms and two azomethine nitrogen atoms. Conductance measurements suggest 1:1 electrolytic nature of the metal complexes. The synthesized compounds except bappnaf ligand have the antimicrobial activity against the bacteria: Escherichia coli (ATCC 11230), Yersinia enterocolitica (ATCC 1501), Bacillus magaterium (RSKK 5117), Bacillus subtilis (RSKK 244), Bacillus cereus (RSKK 863) and the fungi: Candida albicans (ATCC 10239). These results have been considerably interest in piperazine derivatives due to their significant applications in antimicrobial studies.

  17. Use of coal mining waste for the removal of acidity and metal ions Al(III), Fe(III) and Mn(II) in acid mine drainage

    Energy Technology Data Exchange (ETDEWEB)

    Geremias, R.; Laus, R.; Macan, J.M.; Pedrosa, R.C.; Laranjeira, M.C.M.; Silvan, J.; Favere, F.V. [Universidade Federal de Santa Catarina, Florianopolis (Brazil)

    2008-08-15

    The coal industry may generate acid mine drainage (AMD) and mining wastes, which may adversely affect the quality of the environment. In this study we propose the use of this waste in the removal of acidity and metal ions, as well as in the reduction of the toxicity of AMD. A physico-chemical analysis of the waste shows the presence of mainly SiO{sub 2}, Al{sub 2}O{sub 3} and Fe{sub 2}O{sub 3} and a superficial area of 4.316 m{sup 2} g{sup -1}. The treatment of AMD with the waste resulted in an increase in pH from 2.6 to 7.8 and removed 100% of the Al(III), 100% of the Fe(III) and 89% of the Mn (II). We also observed that the high toxicity of the AMD towards Daphnia magna (LC50 = 3.68%) and Artemia sp. (LC50 = 4.97%) was completely eliminated after treatment with the waste. The data obtained allow us to propose that the waste can be used in the treatment of AMD, providing an economic use for the waste.

  18. Texturing a pyramid-like structure on a silicon surface via the synergetic effect of copper and Fe(III) in hydrofluoric acid solution

    Science.gov (United States)

    Cao, Ming; Li, Shaoyuan; Deng, Jianxin; Li, Yuping; Ma, Wenhui; Zhou, Yang

    2016-05-01

    An innovative approach is proposed to texture a pyramid structure on a silicon surface via Cu-catalyzed chemical etching in the HF/FeCl3 system. The surface and cross-section morphologies of the formed pyramid structure were examined by scanning electron microscopy and atomic force microscopy. The results revealed that numerous silicon pyramid-like structures with hemlines of 0.1 ∼ 3 μm and height of 0.1 ∼ 2 μm are close together, and the top angle of the pyramid structure is 90°. Additionally, the systematic study of the effects of the etching time and the concentration of FeCl3 on the pyramid-like structures by the atom configuration model of silicon crystal faces demonstrated that the etching proceeds preferentially along the directions of silicon. A formation mechanism of the pyramid-like structure is proposed. The results imply that the synergetic effect of Cu nanoparticles and Fe(III) could conveniently generate a pyramid-like architecture on the surface of silicon in hydrofluoric acid solution.

  19. Cr(III), Fe(III) and Co(III) complexes of tetradentate (ONNO) Schiff base ligands: synthesis, characterization, properties and biological activity.

    Science.gov (United States)

    Keskioğlu, Eren; Gündüzalp, Ayla Balaban; Cete, Servet; Hamurcu, Fatma; Erk, Birgül

    2008-08-01

    A series of metal complexes were synthesized from equimolar amounts of Schiff bases: 1,4-bis[3-(2-hydroxy-1-naphthaldimine)propyl]piperazine (bappnaf) and 1,8-bis[3-(2-hydroxy-1-naphthaldimine)-p-menthane (damnaf) with metal chlorides. All of synthesized compounds were characterized by elemental analyses, spectral (UV-vis, IR, (1)H-(13)C NMR, LC-MS) and thermal (TGA-DTA) methods, magnetic and conductance measurements. Schiff base complexes supposed in tetragonal geometry have the general formula [M(bappnaf or damnaf)]Cl.nH(2)O, where M=Cr(III), Co(III) and n=2, 3. But also Fe(III) complexes have octahedral geometry by the coordination of two water molecules and the formula is [Fe(bappnaf or damnaf)(H(2)O)(2)]Cl. The changes in the selected vibration bands in FT-IR indicate that Schiff bases behave as (ONNO) tetradentate ligands and coordinate to metal ions from two phenolic oxygen atoms and two azomethine nitrogen atoms. Conductance measurements suggest 1:1 electrolytic nature of the metal complexes. The synthesized compounds except bappnaf ligand have the antimicrobial activity against the bacteria: Escherichia coli (ATCC 11230), Yersinia enterocolitica (ATCC 1501), Bacillus magaterium (RSKK 5117), Bacillus subtilis (RSKK 244), Bacillus cereus (RSKK 863) and the fungi: Candida albicans (ATCC 10239). These results have been considerably interest in piperazine derivatives due to their significant applications in antimicrobial studies.

  20. Experimental and molecular modeling studies of the interaction of the polypyridyl Fe(II) and Fe(III) complexes with DNA and BSA.

    Science.gov (United States)

    Behnamfar, Mohammad Taghi; Hadadzadeh, Hassan; Simpson, Jim; Darabi, Farivash; Shahpiri, Azar; Khayamian, Taghi; Ebrahimi, Malihe; Amiri Rudbari, Hadi; Salimi, Mona

    2015-01-01

    Two mononuclear iron complexes, [Fe(tppz)₂](PF₆)₂·H₂O (1) and Fe(tppz)Cl₃·2CHCl₃ (2) where tppz is (2,3,5,6-tetra(2-pyridyl)pyrazine), have been synthesized and characterized by elemental analysis, spectroscopic methods (UV-Vis and IR) and single crystal X-ray structure analysis. The interaction of (1) as the nitrate salt ([Fe(tppz)₂](NO₃)₂) with calf-thymus DNA (CT-DNA) has been monitored by UV-Vis spectroscopy, competitive fluorescence titration, circular dichroism (CD), voltammetric techniques, viscosity measurement, and gel electrophoresis. Gel electrophoresis of DNA with [Fe(tppz)₂](NO₃)₂ demonstrated that the complex also has the ability to cleave supercoiled plasmid DNA. The results have indicated that the complex binds to CT-DNA by three binding modes, viz., electrostatic, groove and partial insertion of the pyridyl rings between the base stacks of double-stranded DNA. Molecular docking of [Fe(tppz)₂](NO₃)₂ with the DNA sequence d(ACCGACGTCGGT)₂ suggests the complex fits into the major groove. The water-insoluble complex (2) can catalyze the cleavage of BSA at 40 °C. There are no reports of the catalytic effect of polypyridyl metal complexes on the BSA cleavage. Molecular docking of (2) with BSA suggests that, when the chloro ligands in the axial positions are replaced by water molecules, the BSA can interact with the Fe(III) complex more easily.

  1. Cu(II), Fe(III) and Mn(II) combinations as environmental stress factors have distinguishing effects on Enterococcus hirae.

    Science.gov (United States)

    Vardanyan, Zaruhi; Trchounian, Armen

    2015-02-01

    Pollution by various heavy metals as environmental stress factors might affect bacteria. It was established that iron (Fe(III)), manganese (Mn(II)) and copper (Cu(II)) ion combinations caused effects on Enterococcus hirae that differed from the sum of the effects when the metals were added separately. It was shown that the Cu2+-Fe3+ combination decreased the growth and ATPase activity of membrane vesicles of wild-type E. hirae ATCC9790 and atpD mutant (with defective FoF1-ATPase) MS116. Addition of Mn2+-Fe3+ combinations within the same concentration range had no effects on growth compared to control (without heavy metals). ATPase activity was increased in the presence of Mn2+-Fe3+, while together with 0.2 mmol/L N,N'-dicyclohexylcarbodiimide (DCCD), ATPase activity was decreased compared to control (when only 0.2 mmol/L DCCD was present). These results indicate that heavy metals ion combinations probably affect the FOF1-ATPase, leading to conformational changes. Moreover the action may be direct or be mediated by environment redox potential. The effects observed when Fe3+ was added separately disappeared in both cases, which might be a result of competing processes between Fe3+ and other heavy metals. These findings are novel and improve the understanding of heavy metals ions effects on bacteria, and could be applied for regulation of stress response patterns in the environment.

  2. Microbial Manganese Oxidation in Saltmarsh Surface Sediments Using a Leuco Crystal Violet Manganese Oxide Detection Technique

    Science.gov (United States)

    Spratt, Henry G.; Siekmann, Ellen C.; Hodson, Robert E.

    1994-01-01

    Microbial manganese (Mn) oxide production in surface sediments of a Georgia saltmarsh was directly measured using an assay involving the oxidation of 4,4',4″-methylidynetris (N,N-dimethylaniline), leuco crystal violet (LCV), by Mn oxides to produce crystal violet. The assay exhibits high specificity for Mn oxides without interference by Mn(II) and is sufficiently sensitive to determine rates of Mn oxidation in surface sediment or saltmarsh creek water suspensions. Sample salinity affects crystal violet absorbance in the 0-25 salinity range and must be corrected for in Mn oxide determinations for estuarine samples of variable salinity. Other oxidants found to oxidize LCV slowly included Cl(I), Cr(III), I(V), Fe(III), and Mn(III), although the sensitivity of the assay for Mn(IV) oxides was found to be seven times greater than for Mn(III), and at least 100 times greater than for any of the other oxidants. Rates of abiotic Mn oxide production in sediment suspensions treated with either sodium azide or formalin, or autoclaved, were much slower than rates determined for untreated sediments. Sodium azide (7·7 mM) inhibited Mn oxide production in these sediment suspensions to rates between 5 and 10% of the rates of Mn oxidation determined for unamended suspensions. Manganese oxidation was highly temperature dependent, with maximal rates on a dry weight basis (8·9 nmol mg dwt -1 h -1), occurring at 60°C, and negligible activity at 100 and 0°C. Rates were also dependent on sample pH, with maximal rates at pH 6·7, decreasing to near 0 as the pH was lowered to approximately 3·0. For Mn(II) concentrations ranging from 9 to 91 μM, rates of Mn oxide production were independent of Mn(II) concentration, while Mn oxide production was inhibited at concentrations greater than 91 μM (e.g. by 25-40% at 450 μM). Rates of microbial Mn oxide production in surface sediment/saltmarsh creek water suspensions incubated under natural conditions of temperature, pH, and Mn

  3. A Mononuclear Fe(III) Single Molecule Magnet with a 3/2↔5/2 Spin Crossover

    DEFF Research Database (Denmark)

    Mossin, Susanne L.; Tran, Ba L.; Adhikari, Debashis

    2012-01-01

    magnetization data, at zero field and between frequencies 10 and 1042 Hz, clearly reveal complex 1 to have frequency dependence on the out-of-phase signal and thus being a single molecular magnet with a thermally activated barrier of Ueff = 32–36 cm–1 (47–52 K). Variable-temperature Mössbauer data also...... absorption spectra suggest the electronic structure of 1 to be highly covalent with an effective iron oxidation state that is more reduced than the typical ferric complexes due to the significant interaction of the phosphine groups in PNP and Cl ligands with iron. A variable-temperature single crystal X...... corroborate a significant temperature dependence in δ and ΔEQ values for 1, which is in agreement with the system undergoing a change in spin state. Likewise, variable-temperature X-band EPR spectra of 1 reveals the S = 3/2 to be likely the ground state with the S = 5/2 being close in energy. Multiedge XAS...

  4. Determination of the sediment oxidation capacity by column and field experiments with reactive tracers

    Energy Technology Data Exchange (ETDEWEB)

    Dethlefsen, F.; Bliss, F.; Wachter, T.; Dahmke, A. [Kiel Univ. (Germany). Inst. fuer Geowissenschaften; Meckenstock, R. [Tuebingen Univ. (Germany). Zentrum fuer Angewandte Geowissenschaften

    2003-07-01

    The oxidation capacity of ferric iron in column studies was determined by phosphate tracer tests and validated by biodegradation experiments with toluene as a carbon source and the iron(III)-oxide reducing bacterium Geobacter metallireducens as well as with wet chemical extraction. Toluene mass balance, Fe(II) production and tracer test results showed that about 1/3 of the total Fe(III) mass had been reduced during the biodegradation experiment. The redox reactive tracer sulfide is supposed to be more practicable for field purposes, because a sulfide mass or electron balance enables evaluation of the tracer test. In this way, consideration of mineral specific sorption parameters and long residence periods of a sorptive reactive tracer can be avoided. Laboratory column experiments were performed with an artificially composed sediment (quartz sand and ferrihydrite) as well as with natural sediments from the margin of the benzene contaminated RETZINA test site in Zeitz (Germany). Fast reaction kinetics of sulfide with iron(III) minerals allowed the observation of a successive fixation of black iron sulfides in all the glas columns. Depending on the mineral iron content, the sedimentary oxidation capacity of the column material was used up in few days to weeks. Mass of sulfide reacted in the tracer test and sulfide mass recovered by sediment extraction after the experiment were in very good agreement. Evaluation of the column experiments confirmed the calculated ratio that 3 molar equivalents sulfide were used to reduce and fix 2 molar equivalents of Fe(III). Mean Fe(III) content of natural sediment samples (drilling SafZz 28/02 in Zeitz) was 0.35 mg/g sediment determined by laboratory sulfide tracer test and 5 M HCl extractions. Finally, a single well push-pull test was performed at the RETZINA test site Zeitz to test the applicability of the sulfide tracer in a field-scale experiment. (orig.)

  5. Final Report: Molecular mechanisms and kinetics of microbial anaerobic nitrate-dependent U(IV) and Fe(II) oxidation

    Energy Technology Data Exchange (ETDEWEB)

    O' Day, Peggy A. [Univ. of California, Merced, CA (United States); Asta, Maria P. [Univ. of California, Merced, CA (United States); Kanematsu, Masakazu [Univ. of California, Merced, CA (United States); Beller, Harry [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Zhou, Peng [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Steefel, Carl [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

    2015-02-27

    In this project, we combined molecular genetic, spectroscopic, and microscopic techniques with kinetic and reactive transport studies to describe and quantify biotic and abiotic mechanisms underlying anaerobic, nitrate-dependent U(IV) and Fe(II) oxidation, which influences the long-term efficacy of in situ reductive immobilization of uranium at DOE sites. In these studies, Thiobacillus denitrificans, an autotrophic bacterium that catalyzes anaerobic U(IV) and Fe(II) oxidation, was used to examine coupled oxidation-reduction processes under either biotic (enzymatic) or abiotic conditions in batch and column experiments with biogenically produced UIVO2(s). Synthesis and quantitative analysis of coupled chemical and transport processes were done with the reactive transport modeling code Crunchflow. Research focused on identifying the primary redox proteins that catalyze metal oxidation, environmental factors that influence protein expression, and molecular-scale geochemical factors that control the rates of biotic and abiotic oxidation.

  6. Thermally induced transformations of iron oxide stabilised APC residues from waste incineration

    DEFF Research Database (Denmark)

    Sørensen, Mette Abildgaard; Koch, C.B.

    2001-01-01

    Air pollution control (APC) facilities at waste incinerator plants produce large quantities of solid residues rich in salts and heavy metals. Heavy metals are readily released to water from the residues and it has, therefore, been found suitable to apply a rapid co-precipitation/adsorption process...... as a means to immobilize the toxic elements. In the 'Ferrox process', this immobilization is based on co-precipitation with an Fe(III) oxide formed by oxidation of Fe(II) by air in an aqueous slurry with the APC residue at alkaline pH. In this work we have undertaken a Mossbauer spectroscopy study of the Fe...... elements associated with the ferrihydrite are Si and Ca. Following heating to 600 degreesC the oxide is still characterized as an amorphous Fe oxide, and it is probable that Si associated with the ferrihydrite is decisive in preventing crystallization. After the 900 degreesC treatment a transformation...

  7. Electrochemical reduction of nitrous oxide on La1-xSrxFeO3 perovskites

    DEFF Research Database (Denmark)

    Kammer Hansen, Kent

    2010-01-01

    The electrochemical reduction of nitrous oxide and oxygen has been studied on cone-shaped electrodes of La1-xSrxFeO3-delta perovskites in an all solid state cell, using cyclic voltammetry. It was shown that the activity of the La1-xSrxFeO3-delta perovskites for the electrochemical reduction...... of nitrous oxide mainly depends on the amount of Fe(III) and oxide ion vacancies. The activity of the La1-xSrxFeO3-delta perovskites towards the electrochemical reduction of nitrous oxide is much lower than the activity of the La1-xSrxFeO3-delta perovskites towards the electrochemical reduction of oxygen...

  8. Hydrogen and thiosulfate limits for growth of a thermophilic, autotrophic Desulfurobacterium species from a deep-sea hydrothermal vent.

    Science.gov (United States)

    Stewart, Lucy C; Llewellyn, James G; Butterfield, David A; Lilley, Marvin D; Holden, James F

    2016-04-01

    Hydrothermal fluids (341°C and 19°C) were collected < 1 m apart from a black smoker chimney and a tubeworm mound on the Boardwalk edifice at the Endeavour Segment in the northeastern Pacific Ocean to study anaerobic microbial growth in hydrothermal mineral deposits. Geochemical modelling of mixed vent fluid and seawater suggests the mixture was anoxic above 55°C and that low H2 concentrations (79 μmol kg(-1) in end-member hydrothermal fluid) limit anaerobic hydrogenotrophic growth above this temperature. A thermophilic, hydrogenotrophic sulfur reducer, Desulfurobacterium strain HR11, was isolated from the 19°C fluid raising questions about its H2 -dependent growth kinetics. Strain HR11 grew at 40-77°C (Topt 72-75°C), pH 5-8.5 (pHopt 6-7) and 1-5% (wt vol(-1) ) NaCl (NaClopt 3-4%). The highest growth rates occurred when S2 O3 (2-) and S° were reduced to H2 S. Modest growth occurred by NO3 (-) reduction. Monod constants for its growth were Ks of 30 μM for H2 and Ks of 20 μM for S2 O3 (2-) with a μmax of 2.0 h(-1) . The minimum H2 and S2 O3 (2-) concentrations for growth were 3 μM and 5 μM respectively. Possible sources of S2 O3 (2-) and S° are from abiotic dissolved sulfide and pyrite oxidation by O2 .

  9. Breakdown of Clays by Ectomycorrhizal Fungi Through Changes in Oxidation State of Iron

    Science.gov (United States)

    Arocena, J. M.; Velde, B.

    2012-04-01

    Organisms are known to play a significant role in the transformation of clay minerals in soils. In our earlier work on canola, barley and alfalfa, we reported that Glomus, an arbuscular mycorrhizae, selectively transformed biotite into 2:1 expanding clays through the oxidation of Fe (II) in biotite to Fe(III). In this presentation, we will share similar results on clay transformations mediated by ectomycorrhizal fungi colonizing the roots of coniferous trees. Clay samples were isolated from rhizosphere soils of sub-alpine fir (Abies lasiocarpa (Hook.) Nutt.) in northern British Columbia (Canada). Chemical and mineralogical properties of these soils had been reported in our earlier paper. In this study, we subjected the clay samples to iron X-ray Absorption Near Edge Spectroscopy (Fe-XANES) at the Canadian Light Source synchrotron facility in Saskatoon (Canada). Our initial results showed relatively higher amounts of Fe (III) than Fe(II) in clays collected from rhizosphere of Piloderma (an ectomycorrhizal fungus) compared to soils influenced by non-Piloderma species and Control (non-rhizosphere soil). Coupled with the results of X-ray diffraction (XRD) analysis, there seems to be a positive relationship between the relative amounts of Fe(III) and the 2:1 expanding clays. This relationship is consistent with our results on agricultural plants in laboratory experiments on biotites where we suggested that oxidation of Fe(II) to Fe(III) results in the formation of 2:1 expanding clays. In a related data set on chlorite alteration we observed that after dithionite-citrate-bicarbonate (DCB) treatment, the d-spacing of a slight portion of chloritic expanding clays shifted to higher angles indicating decreased d-spacing towards micaceous clays. The reductive process initiated through the action of the DCB treatment seems to indicate the collapsed of expandable clays upon the reduction of Fe(III) to Fe(II). Initial results from the Fe-XANES and XRD analysis of DCB

  10. Simultaneous oxidation of arsenic and antimony at low and circumneutral pH, with and without microbial catalysis

    Science.gov (United States)

    Asta, Maria P.; Nordstrom, D. Kirk; McCleskey, R. Blaine

    2012-01-01

    Arsenic and Sb are common mine-water pollutants and their toxicity and fate are strongly influenced by redox processes. In this study, simultaneous Fe(II), As(III) and Sb(III) oxidation experiments were conducted to obtain rates under laboratory conditions similar to those found in the field for mine waters of both low and circumneutral pH. Additional experiments were performed under abiotic sterile conditions to determine the biotic and abiotic contributions to the oxidation processes. The results showed that under abiotic conditions in aerated Fe(III)–H2SO4 solutions, Sb(III) oxidizes slightly faster than As(III). The oxidation rates of both elements were accelerated by increasing As(III), Sb(III), Fe(III), and Cl- concentrations in the presence of light. For unfiltered circumneutral water from the Giant Mine (Yellowknife, NWT, Canada), As(III) oxidized at 15–78 μmol/L/h whereas Sb(III) oxidized at 0.03–0.05 μmol/L/h during microbial exponential growth. In contrast, As(III) and Sb(III) oxidation rates of 0.01–0.03 and 0.01–0.02 μmol/L/h, respectively, were obtained in experiments performed with acid unfiltered mine waters from the Iberian Pyritic Belt (SW Spain). These results suggest that the Fe(III) formed from microbialoxidation abiotically oxidized As(III) and Sb(III). After sterile filtration of both mine water samples, neither As(III), Sb(III), nor Fe(II) oxidation was observed. Hence, under the experimental conditions, bacteria were catalyzing As and Sb oxidation in the Giant Mine waters and Fe oxidation in the acid waters of the Iberian Pyrite Belt.

  11. Enhanced utilization of oxidants for in situ chemical oxidation of chlorinated and aromatic hydrocarbons

    Science.gov (United States)

    Kang, Namgoo

    Potentially viable strategies were sought for enhanced utilization of potassium permanganate (KMnO4) and Fenton's reagent during in situ chemical oxidation (ISCO). An innovative concept of controlled release of oxidant was introduced and organic-coated, completely or partially microencapsulated KMnO4 (MEPP) particles (874 +/- 377 mum) were created to serve a material that can be specifically targeted to a contaminant source zone. Paraffin wax was employed as the coating material because it is biodegradable, inert to KMnO4, insoluble in water and yet soluble in hydrophobic contaminants such as perchloroethylene (PCE). KMnO4 was released very slowly into water, but the oxidant was rapidly released into PCE. The estimated times for 90% release of the oxidant were 1.6 months, 19.3 years, and 472 years for paraffin wax to KMnO4 mass ratios of 1:1, 2:1 and 5:1, respectively. The MEPP particles preferentially accumulated at the PCE-water interface, and the KMnO4 was rapidly released into PCE (contaminant and the locally high concentrations of KMnO 4 could be achieved at the interfacial region between PCE and water. Fenton's oxidative destruction was investigated for aromatic hydrocarbons (benzene, toluene, ethylbenzene, and o-xylene; BTEX) present as dissolved and adsorbed phases, and chlorinated hydrocarbon (PCE) present mostly as dense non-aqueous phase liquid (DNAPL) (>93% of total PCE mass) in batch reactors (soil: solution = 1 g/L). An enhanced mass removal was observed by combining 300 mM H2O2, 2 mM Fe(III) and 2 mM N-(2-hydroxyethyl)iminodiacetic acid (HEIDA) at near-neutral pH. The PCE degradation was maximal at 600 mM H2O2, 5 mM Fe(III) and 5 mM HEIDA at pH 3. The observed BTEX mass removal rate constants (3.6--7.8 x 10-4 s-1) were compared to the estimated ones (4.1--10.1 x 10-3 s-1) using a semi-quantitative kinetic model. The model sensitivity analyses indicate that iron oxides and soil organic matter could play important roles in the non-specific losses of

  12. Thermoacidophilic archaea for pyrite oxidation in coal desulphurization

    Energy Technology Data Exchange (ETDEWEB)

    Larsson, Liselotte

    1995-10-01

    The desulfurization of low-sulfur coals has been demonstrated with the thermoacidophilic archaeon Acidianus brierleyi. A. brierleyi facilitates the removal of inorganic sulfur from coal and oxidizes mineral pyrite. The results imply that the mechanism behind microbial coal desulfurization and pyrite oxidation is a combination of biotic and abiotic leaching of pyrite. The extent of sulfur removal is dependent on the type of coal and is closely related to he amount of pyritic sulfur in the coal. Studies have shown that neither ash content nor heating value were dramatically affected by the microbial treatment. The use of the archaea Sulfolobus acidocaldarius and Sulfolobus solfataricus, as well as the mesophilic bacteria Thiobacillus ferrooxidans and several Pseudomonas species, has also been studied for coal desulfurization and mineral pyrite oxidation. The archaea and Pseudomonas species did not grow autotrophically on mineral pyrite neither did they oxidize pyrite in coal. The oxidation rate was, however, 5-10 times less than with A. brierleyi on mineral pyrite. The rate of sulfur removal from coal was in the same range as for A. brierleyi which indicates that different reactions are rate limiting in coal depyritization than in mineral pyrite oxidation. 133 refs, 18 figs, 3 tabs

  13. Physiology, Fe(II oxidation, and Fe mineral formation by a marine planktonic cyanobacterium grown under ferruginous conditions

    Directory of Open Access Journals (Sweden)

    Elizabeth D. Swanner

    2015-10-01

    Full Text Available Evidence for Fe(II oxidation and deposition of Fe(III-bearing minerals from anoxic or redox-stratified Precambrian oceans has received support from decades of sedimentological and geochemical investigation of Banded Iron Formations (BIF. While the exact mechanisms of Fe(II oxidation remains equivocal, reaction with O2 in the marine water column, produced by cyanobacteria or early oxygenic phototrophs, was likely. In order to understand the role of cyanobacteria in the deposition of Fe(III minerals to BIF, we must first know how planktonic marine cyanobacteria respond to ferruginous (anoxic and Fe(II-rich waters in terms of growth, Fe uptake and homeostasis, and Fe mineral formation. We therefore grew the common marine cyanobacterium Synechococcus PCC 7002 in closed bottles that began anoxic, and contained Fe(II concentrations that span the range of possible concentrations in Precambrian seawater. These results, along with cell suspension experiments, indicate that Fe(II is likely oxidized by this strain via chemical oxidation with oxygen produced during photosynthesis, and not via any direct enzymatic or photosynthetic pathway. Imaging of the cell-mineral aggregates with scanning electron microscopy (SEM and confocal laser scanning microscopy (CLSM are consistent with extracellular precipitation of Fe(III (oxyhydroxide minerals, but that >10% of Fe(III sorbs to cell surfaces rather than precipitating. Proteomic experiments support the role of reactive oxygen species (ROS in Fe(II toxicity to Synechococcus PCC 7002. The proteome expressed under low Fe conditions included multiple siderophore biosynthesis and siderophore and Fe transporter proteins, but most siderophores are not expressed during growth with Fe(II. These results provide a mechanistic and quantitative framework for evaluating the geochemical consequences of perhaps life’s greatest metabolic innovation, i.e. the evolution and activity of oxygenic photosynthesis, in ferruginous

  14. Arsenite and ferrous iron oxidation linked to chemolithotrophic denitrification for the immobilization of arsenic in anoxic environments

    Science.gov (United States)

    Sun, W.; Sierra-Alvarez, R.; Milner, L.; Oremland, R.; Field, J.A.

    2009-01-01

    The objective of this study was to explore a bioremediation strategy based on injecting NO3- to support the anoxic oxidation of ferrous iron (Fe(II)) and arsenite (As(III)) in the subsurface as a means to immobilize As in the form of arsenate (As(V)) adsorbed onto biogenic ferric (Fe(III)) (hydr)oxides. Continuous flows and filled columns were used to simulate a natural anaerobic groundwater and sediment system with co-occurring As(III) and Fe(II) in the presence (column SF1) or absence (column SF2) of nitrate, respectively. During operation for 250 days, the average influent arsenic concentration of 567 ??g L-1 was reduced to 10.6 (??9.6) ??g L-1 in the effluent of column SF1. The cumulative removal of Fe(II) and As(III) in SF1 was 6.5 to 10-fold higher than that in SF2. Extraction and measurement of the mass of iron and arsenic immobilized on the sand packing of the columns were close to the iron and arsenic removed from the aqueous phase during column operation. The dominant speciation of the immobilized iron and arsenic was Fe(III) and As(V) in SF1, compared with Fe(II) and As(III) in SF2. The speciation was confirmed by X-ray diffraction (XRD) and X-ray photoelectron spectroscopy (XPS). The results indicate that microbial oxidation of As(III) and Fe(II) linked to denitrification resulted in the enhanced immobilization of aqueous arsenic in anaerobic environments by forming Fe(III) (hydr)oxide coated sands with adsorbed As(V). ?? 2009 American Chemical Society.

  15. Invasion of a semi-arid shrubland by annual grasses increases autotrophic and heterotrophic soil respiration rates due to altered soil moisture and temperature patterns

    Science.gov (United States)

    Mauritz, M.; Hale, I.; Lipson, D.

    2010-12-01

    Shrub grassland conversions are a globally occurring phenomenon altering habitat structure, quality and nutrient cycling. Grasses and shrubs differ in their above and belowground biomass allocation, root architecture, phenology, litter quality and quantity. Conversion affects soil microbial communities, soil moisture and temperature and carbon (C) allocation patterns. However, the effect of conversion on C storage is regionally variable and there is no consistent direction of change. In Southern California invasion by annual grasses is a major threat to native shrub communities and it has been proposed that grass invasion increases NPP and ecosystem C storage (Wolkovich et al, 2009). In order to better understand how this shrub grassland conversion changes ecosystem C storage it is important to understand the partitioning of soil respiration into autotrophic and heterotrophic components. Respiration was measured in plots under shrubs and grasses from February when it was cold and wet to July when it was hot and dry, capturing seasonal transitions in temperature and water availability. Roots were excluded under shrubs and grasses with root exclusion cores to quantify heterotrophic respiration. Using total soil respiration (Rt) = autotrophic respiration (root) (Ra)+ heterotrophic respiration (microbial) (Rh) the components contributing to total soil respiration can be evaluated. Respiration, soil moisture and temperature were measured daily at four hour intervals using Licor 8100 automated chamber measurements. Throughout the measurement period, Rt under grasses exceeded Rt under shrubs. Higher Rt levels under grasses were mainly due to higher Ra in grasses rather than changes in Rh. On average grass Ra was almost double shrub Ra. Higher grass respiration levels are partially explained by differences in soil moisture and temperature between shrubs and grasses. Respiration rates responded similarly to seasonal transitions regardless of treatment although Ra had a much

  16. Estimation of autotrophic maximum specific growth rate constant--experience from the long-term operation of a laboratory-scale sequencing batch reactor system.

    Science.gov (United States)

    Su, Yu-min; Makinia, Jacek; Pagilla, Krishna R

    2008-04-01

    The autotrophic maximum specific growth rate constant, muA,max, is the critical parameter for design and performance of nitrifying activated sludge systems. In literature reviews (i.e., Henze et al., 1987; Metcalf and Eddy, 1991), a wide range of muA,max values have been reported (0.25 to 3.0 days(-1)); however, recent data from several wastewater treatment plants across North America revealed that the estimated muA,max values remained in the narrow range 0.85 to 1.05 days(-1). In this study, long-term operation of a laboratory-scale sequencing batch reactor system was investigated for estimating this coefficient according to the low food-to-microorganism ratio bioassay and simulation methods, as recommended in the Water Environment Research Foundation (Alexandria, Virginia) report (Melcer et al., 2003). The estimated muA,max values using steady-state model calculations for four operating periods ranged from 0.83 to 0.99 day(-1). The International Water Association (London, United Kingdom) Activated Sludge Model No. 1 (ASM1) dynamic model simulations revealed that a single value of muA,max (1.2 days(-1)) could be used, despite variations in the measured specific nitrification rates. However, the average muA,max was gradually decreasing during the activated sludge chlorination tests, until it reached the value of 0.48 day(-1) at the dose of 5 mg chlorine/(g mixed liquor suspended solids x d). Significant discrepancies between the predicted XA/YA ratios were observed. In some cases, the ASM1 predictions were approximately two times higher than the steady-state model predictions. This implies that estimating this ratio from a complex activated sludge model and using it in simple steady-state model calculations should be accepted with great caution and requires further investigation.

  17. Incorporation of oxidized uranium into Fe (hydr)oxides during Fe(II) catalyzed remineralization

    Energy Technology Data Exchange (ETDEWEB)

    Nico, Peter S.; Stewart, Brandy D.; Fendorf, Scott

    2009-07-01

    The form of solid phase U after Fe(II) induced anaerobic remineralization of ferrihydrite in the presence of aqueous and absorbed U(VI) was investigated under both abiotic batch and biotic flow conditions. Experiments were conducted with synthetic ground waters containing 0.168 mM U(VI), 3.8 mM carbonate, and 3.0 mM Ca{sup 2+}. In spite of the high solubility of U(VI) under these conditions, appreciable removal of U(VI) from solution was observed in both the abiotic and biotic systems. The majority of the removed U was determined to be substituted as oxidized U (U(VI) or U(V)) into the octahedral position of the goethite and magnetite formed during ferrihydrite remineralization. It is estimated that between 3% and 6% of octahedral Fe(III) centers in the new Fe minerals were occupied by U(VI). This site specific substitution is distinct from the non-specific U co-precipitation processes in which uranyl compounds, e.g. uranyl hydroxide or carbonate, are entrapped with newly formed Fe oxides. The prevalence of site specific U incorporation under both abiotic and biotic conditions and the fact that the produced solids were shown to be resistant to both extraction (30 mM KHCO{sub 3}) and oxidation (air for 5 days) suggest the potential importance of sequestration in Fe oxides as a stable and immobile form of U in the environment.

  18. Isolation and Characterization of Microbes Mediating Thermodynamically Favorable Coupling of Anaerobic Oxidation of Methane and Metal Reduction

    Science.gov (United States)

    Glass, J. B.; Reed, B. C.; Sarode, N. D.; Kretz, C. B.; Bray, M. S.; DiChristina, T. J.; Stewart, F. J.; Fowle, D. A.; Crowe, S.

    2014-12-01

    Methane is the third most reduced environmentally relevant electron donor for microbial metabolisms after organic carbon and hydrogen. In anoxic ecosystems, the major sink for methane is anaerobic oxidation of methane (AOM) mediated by syntrophic microbial consortia that couple AOM to reduction of an oxidized electron acceptor to yield free energy. In marine sediments, AOM is generally coupled to reduction of sulfate despite an extremely small amount of free energy yield because sulfate is the most abundant electron acceptor in seawater. While AOM coupled to Fe(III) and Mn(IV) reduction (Fe- and Mn-AOM) is 10-30x more thermodynamically favorable than sulfate-AOM, and geochemical data suggests that it occurs in diverse environments, the microorganisms mediating Fe- and Mn-AOM remain unknown. Lake Matano, Indonesia is an ideal ecosystem to enrich for Fe- and Mn-AOM microbes because its anoxic ferruginous deep waters and sediments contain abundant Fe(III), Mn(IV) and methane, and extremely low sulfate and nitrate. Our research aims to isolate and characterize the microbes mediating Fe- and Mn-AOM from three layers of Lake Matano sediments through serial enrichment cultures in minimal media lacking nitrate and sulfate. 16S rRNA amplicon sequencing of sediment inoculum revealed the presence of the Fe(III)-reducing bacterium Geobacter (5-10% total microbial community in shallow sediment and 35-60% in deeper sediment) as well as 1-2% Euryarchaeota implicated in methane cycling, including ANME-1 and 2d and Methanosarcinales. After 90 days of primary enrichment, all three sediment layers showed high levels of Fe(III) reduction (60-90 μM Fe(II) d-1) in the presence of methane compared to no methane and heat-killed controls. Treatments with added Fe(III) as goethite contained higher abundances of Geobacter than the inoculum (60-80% in all layers), suggesting that Geobacter may be mediating Fe(III) reduction in these enrichments. Quantification of AOM rates is underway, and

  19. Iron isotope fractionation during microbial dissimilatory iron oxide reduction in simulated Archaean seawater.

    Science.gov (United States)

    Percak-Dennett, E M; Beard, B L; Xu, H; Konishi, H; Johnson, C M; Roden, E E

    2011-05-01

    The largest Fe isotope excursion yet measured in marine sedimentary rocks occurs in shales, carbonates, and banded iron formations of Neoarchaean and Paleoproterozoic age. The results of field and laboratory studies suggest a potential role for microbial dissimilatory iron reduction (DIR) in producing this excursion. However, most experimental studies of Fe isotope fractionation during DIR have been conducted in simple geochemical systems, using pure Fe(III) oxide substrates that are not direct analogues to phases likely to have been present in Precambrian marine environments. In this study, Fe isotope fractionation was investigated during microbial reduction of an amorphous Fe(III) oxide-silica coprecipitate in anoxic, high-silica, low-sulphate artificial Archaean seawater at 30 °C to determine if such conditions alter the extent of reduction or isotopic fractionations relative to those observed in simple systems. The Fe(III)-Si coprecipitate was highly reducible (c. 80% reduction) in the presence of excess acetate. The coprecipitate did not undergo phase conversion (e.g. to green rust, magnetite or siderite) during reduction. Iron isotope fractionations suggest that rapid and near-complete isotope exchange took place among all Fe(II) and Fe(III) components, in contrast to previous work on goethite and hematite, where exchange was limited to the outer few atom layers of the substrate. Large quantities of low-δ(56)Fe Fe(II) (aqueous and solid phase) were produced during reduction of the Fe(III)-Si coprecipitate. These findings shed new light on DIR as a mechanism for producing Fe isotope variations observed in Neoarchaean and Paleoproterozoic marine sedimentary rocks.

  20. Synthesis, Characterization and Thermal Decomposition Studies of Cr(III, Mn(II and Fe(III Complexes of N, N '-Bis[1,3-benzodioxol-5-ylmethylene]butane-1,4-diamine

    Directory of Open Access Journals (Sweden)

    Prasad M. Alex

    2009-01-01

    Full Text Available A bidentate Schiff base ligand namely, N,N'-bis-1,3-benzodioxol-5-ylmethylene]butane-1,4-diamine was synthesised by condensing piperonal (3,4-dioxymethylenebenzaldehyde with butane-1,4-diamine. Cr(III, Mn(II, Fe(III complexes of this chelating ligand were synthesised using acetates, chlorides, bromides, nitrates and perchlorates of these metals. The ligand and the complexes were characterised by elemental analysis, 1H NMR, UV-Vis and IR spectra, conductance and magnetic susceptibility measurements and thermogravimetric analysis. The thermograms of three complexes were analysed and the kinetic parameters for the different stages of decompositions were determined.

  1. Ca alginate as scaffold for iron oxide nanoparticles synthesis

    Directory of Open Access Journals (Sweden)

    P. V. Finotelli

    2008-12-01

    Full Text Available Recently, nanotechnology has developed to a stage that makes it possible to process magnetic nanoparticles for the site-specific delivery of drugs. To this end, it has been proposed as biomaterial for drug delivery system in which the drug release rates would be activated by a magnetic external stimuli. Alginate has been used extensively in the food, pharmaceutical and biomedical industries for their gel forming properties in the presence of multivalent cations. In this study, we produced iron oxide nanoparticles by coprecipitation of Fe(III and Fe(II. The nanoparticles were entrapped in Ca alginate beads before and after alginate gelation. XRD analysis showed that particles should be associated to magnetite or maghemite with crystal size of 9.5 and 4.3 nm, respectively. Studies using Mössbauer spectroscopy corroborate the superparamagnetic behavior. The combination of magnetic properties and the biocompatibility of alginate suggest that this biomaterial may be used as biomimetic system.

  2. New approaches to reprocessing of oxide nuclear fuel

    OpenAIRE

    Myasoedov, B. F.; Kulyako, Yu. M.

    2012-01-01

    Dissolution of UO2, U3O8, and solid solutions of actinides in UO2 in subacid aqueous solutions (pH 0.9–1.4) of Fe(III) nitrate was studied. Complete dissolution of the oxides is attained at a molar ratio of ferric nitrate to uranium of 1.6. During this process actinides pass into the solution in the form of U(VI), Np(V), Pu(III), and Am(III). In the solutions obtained U(VI) is stable both at room temperature and at elevated temperatures (60 °C), and at high U concentrations (up to 300 mg mL−1...

  3. Influence of uranyl speciation and iron oxides on uranium biogeochemical redox reactions

    Energy Technology Data Exchange (ETDEWEB)

    Stewart, B.D.; Amos, R.T.; Nico, P.S.; Fendorf, S.

    2010-03-15

    Uranium is a pollutant of concern to both human and ecosystem health. Uranium's redox state often dictates its partitioning between the aqueous- and solid-phases, and thus controls its dissolved concentration and, coupled with groundwater flow, its migration within the environment. In anaerobic environments, the more oxidized and mobile form of uranium (UO{sub 2}{sup 2+} and associated species) may be reduced, directly or indirectly, by microorganisms to U(IV) with subsequent precipitation of UO{sub 2}. However, various factors within soils and sediments may limit biological reduction of U(VI), inclusive of alterations in U(VI) speciation and competitive electron acceptors. Here we elucidate the impact of U(VI) speciation on the extent and rate of reduction with specific emphasis on speciation changes induced by dissolved Ca, and we examine the impact of Fe(III) (hydr)oxides (ferrihydrite, goethite and hematite) varying in free energies of formation on U reduction. The amount of uranium removed from solution during 100 h of incubation with S. putrefaciens was 77% with no Ca or ferrihydrite present but only 24% (with ferrihydrite) and 14% (no ferrihydrite) were removed for systems with 0.8 mM Ca. Imparting an important criterion on uranium reduction, goethite and hematite decrease the dissolved concentration of calcium through adsorption and thus tend to diminish the effect of calcium on uranium reduction. Dissimilatory reduction of Fe(III) and U(VI) can proceed through different enzyme pathways, even within a single organism, thus providing a potential second means by which Fe(III) bearing minerals may impact U(VI) reduction. We quantify rate coefficients for simultaneous dissimilatory reduction of Fe(III) and U(VI) in systems varying in Ca concentration (0 to 0.8 mM), and using a mathematical construct implemented with the reactive transport code MIN3P, we reveal the predominant influence of uranyl speciation, specifically the formation of uranyl

  4. Iron(III) species formed during iron(II) oxidation and iron-core formation in bacterioferritin of Escherichia coli

    Energy Technology Data Exchange (ETDEWEB)

    Hawkins, C. [Sheffield Univ. (United Kingdom). Dep. of Physics; Treffry, A. [Sheffield Univ. (United Kingdom). Dep. of Molecular Biology and Biotechnology; Mackey, J.; Williams, J.M. [Sheffield Univ. (United Kingdom). Dep. of Physics; Andrews, S.C.; Guest, J.R.; Harrison, P.M. [Sheffield Univ. (United Kingdom). Dep. of Molecular Biology and Biotechnology

    1996-02-01

    This paper describes a preliminary investigation of the mechanisms of Fe(II) oxidation and storage of Fe(III) in the bacterioferritin of Escherichia coli (EcBFR). Using Moessbauer spectroscopy to examine the initial oxidation of iron by EcBFR it is confirmed that this ferritin exhibits ferroxidase activity and is shown that dimeric and monomeric iron species are produced as intermediates. The characteristics of ferroxidase activity in EcBFR is compare d with those of human H-chain ferritin (HuHF) and discuss the different Moessbauer parameters of their dimeric iron with reference to the structures of their di-metal sites. In addition, it is presented preliminary findings suggesting that after an initial {sup b}urst{sup ,} the rate of oxidation is greatly reduced, possibly due to blockage of the ferroxidase centre by bound iron. A new component, not found in HuHF and probably representing a small cluster of Fe(III) atoms, is reported.

  5. Use of statistical design of experiments to evaluate the sorption capacity of 7-amine-4-azaheptylsilica and 10-amine- 4-azadecylsilica for Cu(II), Pb(II), and Fe(III) adsorption.

    Science.gov (United States)

    Passos, Camila G; Ribaski, Fernanda S; Simon, Nathália M; dos Santos, Araci A; Vaghetti, Júlio C P; Benvenutti, Edilson V; Lima, Eder Cláudio

    2006-10-15

    7-Amine-4-azaheptylsilica (AAH Si) and 10-amine-4-azadecylsilica (AAD Si) were prepared and used for removal of Cu(II), Pb(II), and Fe(III) from aqueous solutions. Full 2(3) factorial designs with two pseudo-central points were carried out in order to achieve the best conditions of the batch adsorption procedure for metallic ion uptake by the adsorbents. To continue the optimizations, central composite surface design was also employed. These two independent statistical designs of experiments lead to the following conditions: m=30.0 mg of adsorbent; pH 6.0 for Cu(II) and Pb(II), pH 4.0 for Fe(III); t of contact 180 min to guarantee equilibration at higher adsorbate concentration. After optimization of the conditions, isotherms of the metallic ions adsorbed on the AAH Si and AAD Si adsorbents were obtained, which were fitted to nonlinear Langmuir and Freundlich isotherm models.

  6. Synthesis and characterization of dopamine substitue tripodal trinuclear [(salen/salophen/salpropen)M] (Mdbnd Cr(III), Mn(III), Fe(III) ions) capped s-triazine complexes: Investigation of their thermal and magnetic properties

    Science.gov (United States)

    Uysal, Şaban; Koç, Ziya Erdem

    2016-04-01

    In this work, we aimed to synthesize and characterize a novel tridirectional ligand including three catechol groups and its novel tridirectional-trinuclear triazine core complexes. For this purpose, we used melamine (2,4,6-triamino-1,3,5-triazine) (MA) as starting material. 2,4,6-tris(4-carboxybenzimino)-1,3,5-triazine (II) was synthesized by the reaction of an equivalent melamine (I) and three equivalent 4-carboxybenzaldehyde. 4,4‧,4″-((1E,1‧E,1″E)-((1,3,5-triazine-2,4,6-triyl)tris(azanylylidene))tris(methanylylidene))tris(N-(3,4-dihydroxyphenethyl)benzamide) L (IV) was synthesized by the reaction of one equivalent (II) and three equivalent dopamine (3,4-dihydroxyphenethylamine) (DA) by using two different methods. (II, III, IV) and nine novel trinuclear Cr(III), Mn(III) and Fe(III) complexes of (IV) were characterized by means of elemental analyses, 1H NMR, FT-IR spectrometry, LC-MS (ESI+) and thermal analyses. The metal ratios of the prepared complexes were performed using Atomic Absorption Spectrophotometry (AAS). We also synthesized novel tridirectional-trinuclear systems and investigated their effects on magnetic behaviors of [salen, salophen, salpropen Cr(III)/Mn(III)/Fe(III)] capped complexes. The complexes were determined to be low-spin distorted octahedral Mn(III) and Fe(III), and distorted octahedral Cr(III) all bridged by catechol group.

  7. Multi-reverse flow injection analysis integrated with multi-optical sensor for simultaneous determination of Mn(II), Fe(II), Cu(II) and Fe(III) in natural waters.

    Science.gov (United States)

    Youngvises, Napaporn; Suwannasaroj, Kittigan; Jakmunee, Jaroon; AlSuhaimi, Awadh

    2017-05-01

    Multi-reverse flow injection analysis (Mr-FIA) integrated with multi-optical sensor was developed and optimized for the simultaneous determination of multi ions; Mn(II), Fe(II), Cu(II) and Fe(III) in water samples. The sample/standard solutions were propelled making use of a four channels peristaltic pump whereas 4 colorimetric reagents specific for the metal ions were separately injected in sample streams using multi-syringe pump. The color zones that formed in the individual mixing coils were then streamed into multi-channels spectrometer, which comprised of four flows through cell and four pairs of light emitting diode and photodiode, whereby signals were measured concurrently. The linearity range (along with detection limit, µgL(-1)) was 0.050-3.0(16), 0.30-2.0 (11), 0.050-1.0(12) and 0.10-1.0(50)mgL(-1), for Mn(II), Fe(II), Cu(II) and Fe(III), respectively. In the interim, the correlation coefficients were 0.9924-0.9942. The percentages relative standard deviation was less than 3. The proposed system was applied successfully to determine targeted metal ions simultaneously in natural water with high sample throughput and low reagent consumption, thus it satisfies the criteria of Green Analytical Chemistry (GAC) and its goals.

  8. Solid-phase extraction of Fe(III), Pb(II) and Cr(III) in environmental samples on amberlite XAD-7 and their determinations by flame atomic absorption spectrometry

    Energy Technology Data Exchange (ETDEWEB)

    Divrikli, Umit [Pamukkale University, Faculty of Arts and Science, Department of Chemistry, Denizli 20020 (Turkey)], E-mail: udivrikli@pamukkale.edu.tr; Akdogan, Abdullah [Pamukkale University, Faculty of Arts and Science, Department of Chemistry, Denizli 20020 (Turkey); Soylak, Mustafa [Erciyes University, Faculty of Arts and Science, Department of Chemistry, Kayseri 38039 (Turkey); Elci, Latif [Pamukkale University, Faculty of Arts and Science, Department of Chemistry, Denizli 20020 (Turkey)

    2007-10-22

    This paper describes a simple and accurate procedure for preconcentration of trace amounts of Fe(III), Pb(II) and Cr(III) ions. The preconcentration procedure is based on retention of p-xylenol blue chelates on Amberlite XAD-7. The analytes retained were eluted from Amberlite XAD-7 by using 1 mol L{sup -1} HCl. The influences of the analytical parameters including amounts of reagents, pH and type of eluent were also investigated. The detection limits of Fe, Pb and Cr were found to be 3.07, 18.6 and 3.27 {mu}g L{sup -1}, respectively. The accuracy of the procedure was checked by the analysis of an electrolytic copper wire sample. The relative error was less than 5%. The presented method was applied to the determination of Fe(III), Pb(II) and Cr(III) in water samples from Denizli, Turkey with good results such as recoveries more than 95%, relative standard deviations below 10%.

  9. Solid-phase extraction of Fe(III), Pb(II) and Cr(III) in environmental samples on amberlite XAD-7 and their determinations by flame atomic absorption spectrometry.

    Science.gov (United States)

    Divrikli, Umit; Akdogan, Abdullah; Soylak, Mustafa; Elci, Latif

    2007-10-22

    This paper describes a simple and accurate procedure for preconcentration of trace amounts of Fe(III), Pb(II) and Cr(III) ions. The preconcentration procedure is based on retention of p-xylenol blue chelates on Amberlite XAD-7. The analytes retained were eluted from Amberlite XAD-7 by using 1 mol L(-1) HCl. The influences of the analytical parameters including amounts of reagents, pH and type of eluent were also investigated. The detection limits of Fe, Pb and Cr were found to be 3.07, 18.6 and 3.27 microg L(-1), respectively. The accuracy of the procedure was checked by the analysis of an electrolytic copper wire sample. The relative error was less than 5%. The presented method was applied to the determination of Fe(III), Pb(II) and Cr(III) in water samples from Denizli, Turkey with good results such as recoveries more than 95%, relative standard deviations below 10%.

  10. Anaerobic oxidation of arsenite in Mono Lake water and by a facultative, arsenite-oxidizing chemoautotroph, strain MLHE-1

    Science.gov (United States)

    Oremland, R.S.; Hoeft, S.E.; Santini, J.M.; Bano, N.; Hollibaugh, R.A.; Hollibaugh, J.T.

    2002-01-01

    Arsenite [As(III)]-enriched anoxic bottom water from Mono Lake, California, produced arsenate [As(V)] during incubation with either nitrate or nitrite. No such oxidation occurred in killed controls or in live samples incubated without added nitrate or nitrite. A small amount of biological As(III) oxidation was observed in samples amended with Fe(III) chelated with nitrolotriacetic acid, although some chemical oxidation was also evident in killed controls. A pure culture, strain MLHE-1, that was capable of growth with As(III) as its electron donor and nitrate as its electron acceptor was isolated in a defined mineral salts medium. Cells were also able to grow in nitrate-mineral salts medium by using H2 or sulfide as their electron donor in lieu of As(III). Arsenite-grown cells demonstrated dark 14CO2 fixation, and PCR was used to indicate the presence of a gene encoding ribulose-1,5-biphosphate carboxylase/oxygenase. Strain MLHE-1 is a facultative chemoautotroph, able to grow with these inorganic electron donors and nitrate as its electron acceptor, but heterotrophic growth on acetate was also observed under both aerobic and anaerobic (nitrate) conditions. Phylogenetic analysis of its 16S ribosomal DNA sequence placed strain MLHE-1 within the haloalkaliphilic Ectothiorhodospira of the ??-Proteobacteria. Arsenite oxidation has never been reported for any members of this subgroup of the Proteobacteria.

  11. Antioxidative Mechanisms of Sulfite and Protein-Derived Thiols during Early Stages of Metal Induced Oxidative Reactions in Beer.

    Science.gov (United States)

    Lund, Marianne N; Krämer, Anna C; Andersen, Mogens L

    2015-09-23

    The radical-mediated reactions occurring during the early stages of beer storage were studied by following the rate of oxygen consumption, radical formation as detected by electron spin resonance spectroscopy, and concentrations of the antioxidant compounds sulfite and thiols. Addition of either Fe(III) or Fe(II) had similar effects, indicating that a fast redox equilibrium is obtained between the two species in beer. Addition of iron in combination with hydrogen peroxide gave the most pronounced levels of oxidation due to a direct initiation of ethanol oxidation through generation of hydroxyl radicals by the Fenton reaction. The concentration of sulfite decreased more than the thiol concentration, suggesting that thiols play a secondary role as antioxidants by mainly quenching 1-hydroxyethyl radicals that are intermediates in the oxidation of ethanol. Increasing the temperature had a minor effect on the rate of oxygen consumption.

  12. Magnesium Oxide

    Science.gov (United States)

    Magnesium is an element your body needs to function normally. Magnesium oxide may be used for different reasons. Some ... to relieve heartburn, sour stomach, or acid indigestion. Magnesium oxide also may be used as a laxative ...

  13. Spectroscopic and thermal degradation behavior of Cr(III), Mn(II), Fe(III), Co(II), Ni(II), Cu(II) and Zn(II) complexes with thiopental sodium anesthesia drug

    Science.gov (United States)

    Refat, Moamen S.

    2013-04-01

    A new series of Cr(III), Mn(II), Fe(III), Co(II), Ni(II), Cu(II) and Zn(II) complexes have been synthesized with thiopental sodium anesthesia drug. The elemental analyses of the complexes are confined to stoichiometry of the formulas [M(TPL)3]ṡnH2O (M = Cr(III) or Fe(III); n = 6 or 5), [M(TPL)2(H2O)2]ṡnH2O (M = Mn(II), Co(II) or Ni(II); n = 0 or 4), and [M(TPL)2] (M = Cu(II) or Zn(II); n = 2 or 0) respectively, where TPL is thiopental chelating agent. Structures have been discussed and suggested upon elemental analyses, infrared, Raman, electronic, electron spin resonance, 1H NMR spectral data and magnetic studies. The X-ray powder diffraction (XRD) was performed of metal complexes. The XRD patterns indicate crystalline nature for the complexes. The measured low molar conductance values in dimethylsulfoxide indicate that the complexes are non-electrolyte nature. Spectroscopic discussion refer that coordination take place through three types: Cdbnd N (pyrimidine moiety) nitrogen and C2sbnd S (2-thiolate group) for Cr(III), Mn(II) and Fe(III), C6dbnd O (amido group) oxygen and C2sbnd S (2-thiolate group) for Co(II) and Ni(II), and Cu(II) and Zn(II) ions coordinated via Cdbnd N (pyrimidine moiety) nitrogen, C2dbnd S (2-thiolate group) and C6dbnd O (amido group) oxygen, respectively. The thermal behavior (TG/DTG/DTA) of the complexes was studied and kinetic parameters were determined by Horowitz-Metzger and Coats-Redfern methods. The thiopental and its complexes have been screened for their antimicrobial (G+ and G-) bacteria (Escherichia coli, Staphylococcus aureus, Bacillus subtilis and Pseudomonas aeruginosa) and fungi (Aspergillus flavus and Candida albicans) activities by minimum inhibitory concentration (MIC) method.

  14. Synthesis and magnetic properties of Co{sub 1−x}Zn{sub x}Fe{sub 2}O{sub 4} (x=0÷1) nanopowders by thermal decomposition of Co(II), Zn(II) and Fe(III) carboxylates

    Energy Technology Data Exchange (ETDEWEB)

    Stefanescu, Mircea; Bozdog, Marius [University Politehnica Timisoara, Research Institute for Renewable Energy, 2 Piata Victoriei, 300006 Timisoara (Romania); Muntean, Cornelia, E-mail: cornelia.muntean@upt.ro [University Politehnica Timisoara, Research Institute for Renewable Energy, 2 Piata Victoriei, 300006 Timisoara (Romania); Stefanescu, Oana [University Politehnica Timisoara, Research Institute for Renewable Energy, 2 Piata Victoriei, 300006 Timisoara (Romania); Vlase, Titus [West University of Timisoara, 4 B-dul Vasile Parvan, 300223 Timisoara (Romania)

    2015-11-01

    Nanoparticles of cobalt–zinc ferrite Co{sub 1−x}Zn{sub x}Fe{sub 2}O{sub 4} with x varying from 0 to 1.0 were prepared by a new method, the thermal decomposition of carboxylates of Fe(III), Co(II) and Zn(II). The obtained carboxylate precursor was characterized by thermal analysis and FT-IR spectroscopy. The precursor was annealed at 350, 600 and 1000 °C. It was found that the spinel cobalt–zinc ferrite was formed starting at 350 °C, but in mixture with simple oxides γ-Fe{sub 2}O{sub 3}, Co{sub 3}O{sub 4} and ZnO. At 1000 °C Co{sub 1−x}Zn{sub x}Fe{sub 2}O{sub 4} was formed quantitatively as a single, well-crystallized phase. The saturation magnetization of the samples annealed at 1000 °C decreased significantly with increasing Zn{sup 2+} content from 83.93 emu/g (x=0) to 4.92 emu/g (x=1.0). At 350 and 600 °C the saturation magnetization had the same trend, even if there were contributions of other magnetic phases. Obtaining of spinel ferrite was evidenced by X-ray diffractometry and FT-IR spectrometry. Powder morphology was determined by scanning electron microscopy. Magnetic properties of the synthesized ferrites were investigated employing a conventional induction method. - Highlights: • We synthesized Co{sub 1−x}Zn{sub x}Fe{sub 2}O{sub 4} nanoparticles by decomposition of metal-carboxylates. • Decomposition leads to a homogeneous mixture of high reactive amorphous metal oxides. • This new method involves a faster synthesis procedure and yields virtually 100%. • Magnetic properties of Co{sub 1−x}Zn{sub x}Fe{sub 2}O{sub 4} depend on Zn content and annealing temperature.

  15. 自养、异养和混养下小球藻的生长及生化成分%Growth and Biochemical Components of Chlorella Vulgaris Under Autotrophic, Heterotrophic and Mixotrophic Cultivations

    Institute of Scientific and Technical Information of China (English)

    王海英; 郭祀远; 郑必胜; 李存芝

    2004-01-01

    Investigated in this paper are the growth and biochemical components,such as soluble protein,soluble sugar,chlorophyll and fatty acid composition of Chlorella vulgaris,under autotrophic,heterotrophic and mixotrophic cultivations.The results show that the biomass of Chlorella vulgaris under heterotrophic and mixotrophic cultivations is much higher than that under autotrophic cultivation,that the specific growth rates are respectively 2.13 and 3 times that under autotrophic growth,and that the growth of cells under mixotrophic cultivation is affected by iiluminence,but the effect is not significant at the illuminances of 2.5and 4.0kix,especially in the stationary phase.Compared with autotrophic growth,the content of fat under heterotrophic cultivation obviously increases,while the contents of soluble protein and saccharide decrease,especially chlorophyll.Heterotrophic cultivation is helpful to the accumulation of linolenic acid.The adoption of light makes soluble proteins,saccharides and chlorophyll increase under mixotrophic growth,and the illuminence also has effect on the biochemical component of Chlorella vulgaris.%对小球藻在自养、异养和混养条件下的生长状况及细胞的生化成分(如可溶性蛋白、可溶性糖、叶绿素及脂肪酸组成)进行了研究.结果表明:异养和混养培养的小球藻的生物量远大于自养时的生物量;异养和混养培养的小球藻的比生长速率分别是自养时的2.13倍和3倍;光照对混养条件下的细胞生长有影响,但光照强度为2.5 klx和4.0 klx时细胞生长的差别并不明显,尤其在稳定生长期;与自养生长相比,异养过程中小球藻的脂肪含量明显增加,可溶性蛋白和可溶性糖的含量则有不同程度的降低,叶绿素含量大大减少;异养有利于亚麻酸的积累;在混养条件下,光照使可溶性蛋白、可溶性糖和叶绿素的含量增加,其强度对细胞的生化成分有影响.

  16. Substrate activation for O2 reactions by oxidized metal centers in biology.

    Science.gov (United States)

    Pau, Monita Y M; Lipscomb, John D; Solomon, Edward I

    2007-11-20

    The uncatalyzed reactions of O(2) (S = 1) with organic substrates (S = 0) are thermodynamically favorable but kinetically slow because they are spin-forbidden and the one-electron reduction potential of O(2) is unfavorable. In nature, many of these important O(2) reactions are catalyzed by metalloenzymes. In the case of mononuclear non-heme iron enzymes, either Fe(II) or Fe(III) can play the catalytic role in these spin-forbidden reactions. Whereas the ferrous enzymes activate O(2) directly for reaction, the ferric enzymes activate the substrate for O(2) attack. The enzyme-substrate complex of the ferric intradiol dioxygenases exhibits a low-energy catecholate to Fe(III) charge transfer transition that provides a mechanism by which both the Fe center and the catecholic substrate are activated for the reaction with O(2). In this Perspective, we evaluate how the coupling between this experimentally observed charge transfer and the change in geometry and ligand field of the oxidized metal center along the reaction coordinate can overcome the spin-forbidden nature of the O(2) reaction.

  17. Carbon mineralization in Arctic sediments northeast of Svalbard: Mn(IV) and Fe(III) reduction as principal anaerobic respiratory pathways

    DEFF Research Database (Denmark)

    Vandieken, Verona; Nickel, Maren; Jørgensen, Bo Barker

    2006-01-01

    Carbon oxidation rates and pathways were determined in 3 sediments at latitude 79 degrees to 81 degrees N in the Barents Sea, where the ice cover restricts primary production to a few months of the year. Oxygen uptake (1.5 to 3.5 imnol m(-2) d(-1)) and sulfate reduction (= 60 mu mol cm(-3)) and F...

  18. SERS and DFT investigation of 1-(2-pyridylazo)-2-naphthol and its metal complexes with Al(III), Mn(II), Fe(III), Cu(II), Zn(II) and Pb(II)

    Science.gov (United States)

    Szabó, László; Herman, Krisztian; Mircescu, Nicoleta E.; Fălămaş, Alexandra; Leopold, Loredana F.; Leopold, Nicolae; Buzumurgă, Claudia; Chiş, Vasile

    The development of surface-enhanced Raman scattering (SERS) as a prospective analytical methodology for detection of metal ions was shown in recent years by several studies on metal complexes. In this work, 1-(2-pyridylazo)-2-naphthol (PAN) and its Al(III), Mn(II), Fe(III), Cu(II), Zn(II) and Pb(II) complexes were studied by FTIR, FT-Raman and surface enhanced Raman spectroscopies. Molecular geometry optimization, molecular electrostatic potential (MEP) distribution and vibrational frequencies calculations were performed using the hybrid B3LYP exchange-correlation functional for the PAN molecule and its bidentate complexes. The calculated MEP distributions indicated the atoms with highest electronegativity, the adsorption to the silver surface occurring through these atoms. Based on experimental and theoretical data we were able to identify unique and representative features, useful for the identification of each PAN-metal complex.

  19. Column solid phase extraction and flame atomic absorption spectrometric determination of manganese(II) and iron(III) ions in water, food and biological samples using 3-(1-methyl-1H-pyrrol-2-yl)-1H-pyrazole-5-carboxylic acid on synthesized graphene oxide

    Energy Technology Data Exchange (ETDEWEB)

    Pourjavid, Mohammad Reza, E-mail: pourjavid@gmail.com [NFCRS, Nuclear Science and Technology Research Institute, P.O. Box 11365-8486, Tehran (Iran, Islamic Republic of); Sehat, Ali Akbari [Department of Analytical Chemistry, Faculty of Chemistry, University College of Science, University of Tehran, P.O. Box 14155-6455, Tehran (Iran, Islamic Republic of); Arabieh, Masoud; Yousefi, Seyed Reza; Hosseini, Majid Haji; Rezaee, Mohammad [NFCRS, Nuclear Science and Technology Research Institute, P.O. Box 11365-8486, Tehran (Iran, Islamic Republic of)

    2014-02-01

    A modified, selective, highly sensitive and accurate procedure for the determination of trace amounts of manganese and iron ions is established in the presented work. 3-(1-Methyl-1H-pyrrol-2-yl)-1H-pyrazole-5-carboxylic acid (MPPC) and graphene oxide (GO) were used in a glass column as chelating reagent and as adsorbent respectively prior to their determination by flame atomic absorption spectrometry. The adsorption mechanism of titled metals complexes on GO was investigated by using computational chemistry approach based on PM6 semi-empirical potential energy surface (PES). The effect of some parameters including pH, flow rate and volume of sample and type, volume and concentration of eluent, as well as the adsorption capacity of matrix ions on the recovery of Mn(II) and Fe(III) was investigated. The limit of detection was 145 and 162 ng L{sup −1} for Mn(II) and Fe(III), respectively. Calibration was linear over the range of 0.31–355 μg L{sup −1} for Mn(II) and 0.34–380 μg L{sup −1} for Fe(III) ions. The method was successfully applied for the determination of understudied ions in water, food and biological samples. - Highlights: • We use synthesized graphene oxide as adsorbent for SPE of Mn(II) and Fe(III) ions. • Adsorption mechanism was investigated by PM6 semi-empirical potential energy surface. • Detection limits were 145 and 162 ng L{sup −1} for Mn and Fe, respectively. • The preconcentration factor was 325 and sample flow rate is 8 mL min{sup −1}. • It was successfully applied to the determination of Mn and Fe ions in real samples.

  20. Characterization of the DNA-Mediated Oxidation of Dps, A Bacterial Ferritin.

    Science.gov (United States)

    Arnold, Anna R; Zhou, Andy; Barton, Jacqueline K

    2016-09-07

    Dps proteins are bacterial ferritins that protect DNA from oxidative stress and have been implicated in bacterial survival and virulence. In addition to direct oxidation of the Dps iron sites by diffusing oxidants, oxidation from a distance via DNA charge transport (CT), where electrons and electron holes are rapidly transported through the base-pair π-stack, could represent an efficient DNA protection mechanism utilized by Dps. Here, we spectroscopically characterize the DNA-mediated oxidation of ferrous iron-loaded Dps. X-band EPR was used to monitor the oxidation of DNA-bound Dps after DNA photooxidation using an intercalating ruthenium photooxidant and the flash-quench technique. Upon irradiation with poly(dGdC)2, a signal arises with g = 4.3, consistent with the formation of mononuclear high-spin Fe(III) sites of low symmetry, the expected oxidation product of Dps with one iron bound at each ferroxidase site. When poly(dGdC)2 is substituted with poly(dAdT)2, the yield of Dps oxidation is decreased significantly, consistent with guanine radical intermediates facilitating Dps oxidation. We have also explored possible protein electron transfer (ET) intermediates in the DNA-mediated oxidation of ferrous iron-loaded Dps. Dps proteins contain a conserved tryptophan residue in close proximity to the iron-binding ferroxidase site (W52 in E. coli Dps). In EPR studies of the oxidation of ferrous iron-loaded Dps following DNA photooxidation, a W52A Dps mutant was significantly deficient compared to WT Dps in forming the characteristic EPR signal at g = 4.3, consistent with W52 acting as an ET hopping intermediate. This effect is mirrored in vivo in E. coli survival in response to hydrogen peroxide, where mutation of W52 leads to decreased survival under oxidative stress.

  1. Solution voltammetry of 4 nm magnetite iron oxide nanoparticles.

    Science.gov (United States)

    Roberts, Joseph J P; Westgard, John A; Cooper, Laura M; Murray, Royce W

    2014-07-30

    The voltammetry of solution-dispersed magnetite iron oxide Fe3O4 nanoparticles is described. Their currents are controlled by nanoparticle transport rates, as shown with potential step chronoamperometry and rotated disk voltammetry. In pH 2 citrate buffer with added NaClO4 electrolyte, solution cyclic voltammetry of these nanoparticles (average diameter 4.4 ± 0.9 nm, each containing ca. 30 Fe sites) displays an electrochemically irreversible oxidation with E(PEAK) at ca. +0.52 V and an irreversible reduction with E(PEAK) at ca. +0.2 V vs Ag/AgCl reference electrode. These processes are presumed to correspond to the formal potentials for one-electron oxidation of Fe(II) and reduction of Fe(III) at their different sites in the magnetite nanoparticle structure. The heterogeneous electrode reaction rates of the nanoparticles are very slow, in the 10(-5) cm/s range. The nanoparticles are additionally characterized by a variety of tools, e.g., TEM, UV/vis, and XPS spectroscopies.

  2. In-Situ Incubation of Iron-Sulfide Mineral in Seawater Reveals Colonization by Iron-Oxidizing Gammaproteobacteria and Zetaproteobacteria.

    Science.gov (United States)

    Barco, R. A.; Ramírez, G. A.; Sylvan, J. B.; Edwards, K. J.

    2015-12-01

    Sulfide mineral precipitation occurs at mid-ocean ridge (MOR) spreading centers, both in the form of plume particles and massive sulfide structures. A common constituent of MOR sulfide mineral is pyrrhotite (Fe1-xS). This mineral was chosen as a substrate for in-situ incubation studies in the shallow waters of Catalina Islands, CA to investigate the colonization of iron-oxidizing bacteria. Gammaproteobacteria and Alphaproteobacteria largely dominated the bacterial community on pyrrhotite samples incubated in the water column. Pyrrhotite samples incubated at the sediment/water column interface showed more even dominance by Gammaproteobacteria, Alphaproteobacteria, Deltaproteobacteria and Bacteroidetes. Cultivations that originated from these pyrrhotite samples resulted in the enrichment of Zetaproteobacteria with either twisted-stalks (Mariprofundus) or sheath structures. Additionally, a candidate novel Gammaproteobacterium was isolated and shown to grow autotrophically via the oxidation of iron.

  3. A synthetic peptide with the putative iron binding motif of amyloid precursor protein (APP does not catalytically oxidize iron.

    Directory of Open Access Journals (Sweden)

    Kourosh Honarmand Ebrahimi

    Full Text Available The β-amyloid precursor protein (APP, which is a key player in Alzheimer's disease, was recently reported to possess an Fe(II binding site within its E2 domain which exhibits ferroxidase activity [Duce et al. 2010, Cell 142: 857]. The putative ligands of this site were compared to those in the ferroxidase site of ferritin. The activity was indirectly measured using transferrin, which scavenges the Fe(III product of the reaction. A 22-residue synthetic peptide, named FD1, with the putative ferroxidase site of APP, and the E2 domain of APP were each reported to exhibit 40% of the ferroxidase activity of APP and of ceruloplasmin. It was also claimed that the ferroxidase activity of APP is inhibited by Zn(II just as in ferritin. We measured the ferroxidase activity indirectly (i by the incorporation of the Fe(III product of the ferroxidase reaction into transferrin and directly (ii by monitoring consumption of the substrate molecular oxygen. The results with the FD1 peptide were compared to the established ferroxidase activities of human H-chain ferritin and of ceruloplasmin. For FD1 we observed no activity above the background of non-enzymatic Fe(II oxidation by molecular oxygen. Zn(II binds to transferrin and diminishes its Fe(III incorporation capacity and rate but it does not specifically bind to a putative ferroxidase site of FD1. Based on these results, and on comparison of the putative ligands of the ferroxidase site of APP with those of ferritin, we conclude that the previously reported results for ferroxidase activity of FD1 and - by implication - of APP should be re-evaluated.

  4. A synthetic peptide with the putative iron binding motif of amyloid precursor protein (APP) does not catalytically oxidize iron.

    Science.gov (United States)

    Ebrahimi, Kourosh Honarmand; Hagedoorn, Peter-Leon; Hagen, Wilfred R

    2012-01-01

    The β-amyloid precursor protein (APP), which is a key player in Alzheimer's disease, was recently reported to possess an Fe(II) binding site within its E2 domain which exhibits ferroxidase activity [Duce et al. 2010, Cell 142: 857]. The putative ligands of this site were compared to those in the ferroxidase site of ferritin. The activity was indirectly measured using transferrin, which scavenges the Fe(III) product of the reaction. A 22-residue synthetic peptide, named FD1, with the putative ferroxidase site of APP, and the E2 domain of APP were each reported to exhibit 40% of the ferroxidase activity of APP and of ceruloplasmin. It was also claimed that the ferroxidase activity of APP is inhibited by Zn(II) just as in ferritin. We measured the ferroxidase activity indirectly (i) by the incorporation of the Fe(III) product of the ferroxidase reaction into transferrin and directly (ii) by monitoring consumption of the substrate molecular oxygen. The results with the FD1 peptide were compared to the established ferroxidase activities of human H-chain ferritin and of ceruloplasmin. For FD1 we observed no activity above the background of non-enzymatic Fe(II) oxidation by molecular oxygen. Zn(II) binds to transferrin and diminishes its Fe(III) incorporation capacity and rate but it does not specifically bind to a putative ferroxidase site of FD1. Based on these results, and on comparison of the putative ligands of the ferroxidase site of APP with those of ferritin, we conclude that the previously reported results for ferroxidase activity of FD1 and - by implication - of APP should be re-evaluated.

  5. RNA oxidation

    DEFF Research Database (Denmark)

    Kjaer, L. K.; Cejvanovic, V.; Henriken, T.

    2015-01-01

    RNA modification has attracted increasing interest as it is realized that epitranscriptomics is important in disease development. In type 2 diabetes we have suggested that high urinary excretion of 8-oxo-2'-Guanosine (8oxoGuo), as a measure of global RNA oxidation, is associated with poor survival.......9 significant hazard ratio for death compared with the quartile with the lowest 8oxoGuo excretion when adjusted for age, sex, BMI, smoker status, s-HbA1c, urine protein excretion and s-cholesterol. We conclude that it is now established that RNA oxidation is an independent risk factor for death in type 2...... diabetes. In agreement with our previous finding, DNA oxidation did not show any prognostic value. RNA oxidation represents oxidative stress intracellularly, presumably predominantly in the cytosol. The mechanism of RNA oxidation is not clear, but hypothesized to result from mitochondrial dysfunction...

  6. Mechanism of horseradish peroxidase-catalyzed heme oxidation and polymerization (beta-hematin formation).

    Science.gov (United States)

    Trivedi, Vishal; Chand, Prem; Maulik, Prakas R; Bandyopadhyay, Uday

    2005-05-25

    Horseradish peroxidase (HRP) catalyzes the polymerization of free heme (beta-hematin formation) through its oxidation. Heme when added to HRP compound II (FeIV=O) causes spectral shift from 417 nm (Compound II) to 402 nm (native, FeIII) indicating that heme may be oxidized via one-electron transfer. Direct evidence for one-electron oxidation of heme by HRP intermediates is provided by the appearance of an E.s.r signal of a 5,5-dimethyl-1-pyrroline N-oxide (spin trap)-heme radical adduct (a1H=14.75 G, a2H=4.0 G) in E.s.r studies. Heme-polymerization by HRP is inhibited by spin trap indicating that one-electron oxidation product of heme ultimately leads to the formation of heme-polymer. HRP, when incubated with diethyl pyrocarbonate (DEPC), a histidine specific reagent, shows concentration dependent loss of heme-polymerization indicating the role of histidine residues in the process. We suggest that HRP catalyzes the formation of heme-polymer through one-electron oxidation of free heme.

  7. Formation, Removal, and Reformation of Surface Coatings on Various Metal Oxide Surfaces Inspired by Mussel Adhesives.

    Science.gov (United States)

    Kang, Taegon; Oh, Dongyeop X; Heo, Jinhwa; Lee, Han-Koo; Choy, Seunghwan; Hawker, Craig J; Hwang, Dong Soo

    2015-11-11

    Mussels survive by strongly attaching to a variety of different surfaces, primarily subsurface rocks composed of metal oxides, through the formation of coordinative interactions driven by protein-based catechol repeating units contained within their adhesive secretions. From a chemistry perspective, catechols are known to form strong and reversible complexes with metal ions or metal oxides, with the binding affinity being dependent on the nature of the metal ion. As a result, catechol binding with metal oxides is reversible and can be broken in the presence of a free metal ion with a higher stability constant. It is proposed to exploit this competitive exchange in the design of a new strategy for the formation, removal, and reformation of surface coatings and self-assembled monolayers (SAM) based on catechols as the adhesive unit. In this study, catechol-functionalized tri(ethylene oxide) (TEO) was synthesized as a removable and recoverable self-assembled monolayer (SAM) for use on oxides surfaces. Attachment and detachment of these catechol derivatives on a variety of surfaces was shown to be reversible and controllable by exploiting the high stability constant of catechol to soluble metal ions, such as Fe(III). This tunable assembly based on catechol binding to metal oxides represents a new concept for reformable coatings with applications in fields ranging from friction/wettability control to biomolecular sensing and antifouling.

  8. Catalytic effect of free iron ions and heme-iron on chromophore oxidation of a polyene antibiotic amphotericin B

    Science.gov (United States)

    Czernel, Grzegorz; Typek, Rafał; Klimek, Katarzyna; Czuryło, Aleksandra; Dawidowicz, Andrzej L.; Gagoś, Mariusz

    2016-05-01

    Owing to the presence of a chromophore in the amphotericin B (AmB) structure, the molecule can undergo the oxidation process. In this research, AmB chromophore oxidation was catalysed by iron ions (iron(III) chloride (FeCl3), pH 2.5) and by heme-iron (methemoglobin (HbFe(III)), and hemin (heme-Fe(III)) at pH 7.0). Additionally, we compared oxidation processes induced by the aforementioned oxidizing agents with autoxidation by dioxygen (O2) naturally occurring in a sample. The effects of the interaction of the oxidizing agents with AmB were analysed using molecular spectroscopies (electronic absorption (UV-Vis), fluorescence) and LC-MS. The use of a 1,10-phenanthroline (phen) chelator facilitated unambiguous determination of the oxidative effect of free iron(III) ions (FeIII) in an acidic solution on the AmB molecules. Also, the changes in the spectra of fluorescence emission centred at ∼470 nm indicate iron-catalysed processes of AmB chromophore oxidation. Unexpectedly, we found a similar spectroscopic effect for AmB induced by methemoglobin and hemin at pH 7.0. Methemoglobin and hemin at a concentration of 8 × 10-7 M (physiological) significantly increases the rate of the processes of AmB chromophore oxidation relative to the process of autoxidation.

  9. [Nitric oxide].

    Science.gov (United States)

    Rovira, I

    1995-01-01

    Nitric oxide was identified as the relaxing factor derived from the endothelium in 1987. Nitric oxide synthesis allows the vascular system to maintain a state of vasodilation, thereby regulating arterial pressure. Nitric oxide is also found in platelets, where it inhibits adhesion and aggregation; in the immune system, where it is responsible for the cytotoxic action of macrophages; and in the nervous system, where it acts as neurotransmitter. A deficit in endogenous synthesis of nitric oxide contributes to such conditions as essential arterial hypertension, pulmonary hypertension and heart disease. An excess of nitrous oxide induced by endotoxins and cytokinins, meanwhile, is believed to be responsible for hypotension in septic shock and for hyperdynamic circulatory state in cirrhosis of the liver. Nitric oxide has also been implicated in the rejection of transplanted organs and in cell damage after reperfusion. Inhaled nitrous oxide gas reduces pulmonary hypertension without triggering systemic hypotension in both experimental and clinical conditions. It also produces selective vasodilation when used to ventilate specific pulmonary areas, thereby improving the ventilation/perfusion ratio and, hence, oxygenation. Nitric oxide inhalation is effective in pulmonary hypertension-coincident with chronic obstructive lung disease, in persistent neonatal pulmonary hypertension and in pulmonary hypertension with congenital or acquired heart disease. Likewise, it reduces intrapulmonary shunt in acute respiratory failure and improves gas exchange. Under experimental conditions nitric oxide acts as a bronchodilator, although it seems to be less effective for this purpose in clinical use.(ABSTRACT TRUNCATED AT 250 WORDS)

  10. Myoglobin-induced oxidative damage

    DEFF Research Database (Denmark)

    Irwin, J A; Ostdal, H; Davies, Michael Jonathan

    1999-01-01

    Reaction of equine Fe(III) myoglobin with H2O2 gives rise to an Fe(IV)-oxo species at the heme center and protein (globin)-derived radicals. Studies have shown that there are two (or more) sites for the protein-derived radical: at tyrosine (Tyr-103) or tryptophan (Trp-14). The latter radical reac...

  11. Effect of wall growth on the kinetic modeling of nitrite oxidation in a CSTR.

    Science.gov (United States)

    Dokianakis, Spiros N; Kornaros, Michael; Lyberatos, Gerasimos

    2006-03-05

    A simple kinetic model was developed for describing nitrite oxidation by autotrophic aerobic nitrifiers in a continuous stirred tank reactor (CSTR), in which mixed (suspended and attached) growth conditions prevail. The CSTR system was operated under conditions of constant nitrite feed concentration and varying volumetric flow rates. Experimental data from steady-state conditions in the CSTR system and from batch experiments were used for the determination of the model's kinetic parameters. Model predictions were verified against experimental data obtained under transient operating conditions, when volumetric flow rate and nitrite feed concentration disturbances were imposed on the CSTR. The presented kinetic modeling procedure is quite simple and general and therefore can also be applied to other mixed growth biological systems.

  12. Dependence of reaction rate of pyrite oxidation on temperature, pH and oxidant concentration

    Institute of Scientific and Technical Information of China (English)

    LU; Long; WANG; Rucheng; XUE; Jiyue; CHEN; Fanrong; CHEN; J

    2005-01-01

    The kinetic sstudy of pyrite oxidation was performed in a series of experiments by a mixed flow reactor. The release rates of Fe(II) are in the order of 3.22×10-9-5.51×10-7 mol·m-2·s-1 at temperature (T ) 25 to 44℃, initial pH (pH )1.4 to 2.7, and initial Fe(III) concentration ([Fe(III)]I) 10-5 to 5×10-3 mol·kg-1. The release rate of Fe(II) increased with increasing T or/and pH or/and [Fe(III)]I in the above range. The rate law and activation energy of pyrite oxidation were derived by statistical analyses of Rfe(II) vs. [Fe(III)]I, Rfe(II) vs. pH and Rfe(II) vs. T, and are given as (1) Rate law: Rfe(II)=104.65e-64.54×103/8.31T[Fe(III)]i0.6./[H+]0.45 ; (2) activation energy: 64.54 ( 8.07 kJ·mol-1. The expression can be applied to more cases (e.g., quantifying the pollutant released from sulfide-rich mining waste and assessing reliable performance of underground repository sites where pyrite acts as an engineered barrier material). Using the rate law derived from this study, the magnitude of the pollutants transferred to secondary phases, soil and water from oxidized pyrite during Jiguanshan mine waste weathering was preliminarily estimated. The estimated magnitude is very high, suggesting that the pile has possibly posed significant impact on the water quality in this region.

  13. How Is the Oxidative Capacity of the Cloud Aqueous Phase Modified By Bacteria?

    Science.gov (United States)

    Deguillaume, L.; Mouchel-Vallon, C.; Passananti, M.; Wirgot, N.; Joly, M.; Sancelme, M.; Bianco, A.; Cartier, N.; Brigante, M.; Mailhot, G.; Delort, A. M.; Chaumerliac, N. M.

    2014-12-01

    The aqueous phase photochemical reactions of constituents present in atmospheric water like H2O2, NO3-, NO2- and Fe(III) aqua-complexes or organic complexes can form radicals such as the hydroxyl radical HO within the water drop. However, the literature lacks of data precising the rate of HO formation and the relative contribution of the photochemical sources of HO. The production of radicals in cloud aqueous phase drives the oxidative capacity of the cloud medium and the efficiency of organic matter oxidation. The oxidation of organic compounds is suspected to lead to oxygenated species that could contribute to secondary organic aerosol (SOA) mass (Ervens et al., 2011). In current cloud chemistry models, HO concentrations strongly depend on the organic and iron amount. For high concentrations of organic compounds, this radical is efficiently consumed during the day due to the oxidation process. When iron concentrations are typical from continental cloud, the photolysis of Fe(III) complexes and the Fenton reaction drive the HO concentrations in the cloud models. The concept of biocatalysed reactions contributing to atmospheric chemistry as an alternative route to photochemistry is quite new (Vaïtilingom et al., 2013); it emerged from the recent discovery of metabolically active microorganisms in clouds. Microorganisms are well-known to degrade organic matter but they could also interact with oxidant species such as H2O2 (or their precursors) thanks to their oxidative and nitrosative stress metabolism that will act directly on these species and on their interactions with iron (metalloproteins and siderophores). For the moment, biological impact on radical chemistry within cloud has not been yet considered in cloud chemistry models. Bacterial activity will be introduced as catalysts in a multiphase cloud chemistry model using degradation rates measured in the laboratory. For example, biodegradation rates of the oxidants H2O2 by model bacteria will be tested in the

  14. Mechanism of oxidation of L-methionine by iron(III)-1,10-phenanthroline complex - A kinetic study

    Indian Academy of Sciences (India)

    P Vani; K Krishna Kishore; R Rambabu; L S A Dikshitulu

    2001-08-01

    Kinetics and mechanism of oxidation of L-methionine by iron(III)-1, 10-phenanthroline complex have been studied in perchloric acid medium. The reaction is first order each in iron(III) and methionine. Increase in [phenanthroline] increases the rate while increase in [HClO4] decreases it. While the reactive species of the substrate is the zwitterionic form, that of the oxidant is [Fe(phen)2(H2O)2]3+. The proposed mechanism leads to the rate law $$\\dfrac{d[Fe(phen)^{2+}_3]}{dt} = \\dfrac{k_2 K_4 K_3 K^2_2 [Fe^{III}] [\\text{phen}^2] [\\text{Met}]}{(1+K_1 [H^+]) ([H^+]^2 + K_4 K_3 K^2_2[\\text{phen}]^2)}.$$

  15. Community analysis of ammonia oxidizer in the oxygen-limited nitritation stage of OLAND system by DGGE of PCR amplified 16S rDNA Fragments and FISH

    Institute of Scientific and Technical Information of China (English)

    ZHANG Dan; ZHANG De-min; LIU Yao-ping; CAO Wen-wei; CHEN Guan-xiong

    2004-01-01

    OLAND(oxygen limited autotrophic nitrification and denitrification) nitrogen removal system was constructed by coupling with oxygen limited nitritation stage and anaerobic ammonium oxidation stage. Ammonia oxidizer, as a kind of key bacteria in N cycle, plays an important role at the oxygen limited nitritation stage of OLAND nitrogen removal system. In this study, specific amplification of 16S rDNA fragment of ammonia oxidizer by nested PCR, separation of mixed PCR samples by denaturing gradient gel electrophoresis(DGGE), and the quantification of ammonia oxidizer by Fluorescence in situ hybridization(FISH) were combined to investigate the shifts of community composition and quantity of ammonia oxidizer of the oxygen limited nitritation stage in OLAND system. It showed that the community composition of ammonia oxidizer changed drastically when dissolved oxygen was decreased gradually, and the dominant ammonia oxidizer of the steady nitrite accumulation stage were completely different from that of the early stage of oxygen limited nitritation identified by DGGE . It was concluded that the Nitrosomonas may be the dominant genus of ammonia oxidizer at the oxygen limited nitritation stage of OLAND system characterized by nested PCR-DGGE and FISH, and the percentage of Nitrosomonas was 72.5% ( 0.8% of ammonia oxidizer at the steady nitrite accumulation stage detected by FISH.

  16. Unravelling the fate of arsenic during re-oxidation of reduced wetland waters: Experimental constraints and environmental consequences

    Science.gov (United States)

    Pédrot, Mathieu; Dia, Aline; Davranche, Mélanie; Martin, Sébastien; Al-Sid-Cheikh, Maya; Gruau, Gérard

    2015-09-01

    The presence of arsenic(As)-bearing Fe(III) oxyhydroxides in wetland zones may threat water quality due to the reduction processes that affect these zones. These processes have indeed the potential of releasing As into the soil solutions, and ultimately into the nearby river network, being given the hydrological connectivity that exists between wetlands and rivers. The effective transport of the released As into the river network is however dependent on the behaviour of As during the re-oxidation process that will occur at the wetland-river boundary, which could immobilize the released As into neo-formed Fe(III) oxyhydroxides. One of the key questions is, however, which is the impact of the organic-rich nature of wetland waters on this neoformation, which could instead favour the development of highly mobile As-bearing, organomineral colloids. In this study, we evaluated this possibility by carrying out oxidation experiments on humic acid (HA)- and As(III)/Fe(II)-rich waters. The ultrafiltration results showed that the presence of organic molecules during Fe oxidation events played a major role in the hydrolysis reaction of Fe oxyhydroxides. When Fe microparticles were formed in the absence of HA, the occurrence of HA during Fe oxidation events promoted the formation of amorphous nanosize Fe phase diffusely embedded within the organic matrix. These mixed Fe-HA colloids constrained the fate and distribution of As. These results were confirmed by nanoSIMS images that showed As sorption onto and within Fe microparticles (> 0.2 μm) in the absence of HA. By contrast, with HA, results showed preferential incorporation of As in the bulk of Fe-HA colloids (< 0.2 μm) during their formation rather than surface adsorption onto these colloids.

  17. Fluorescence turn-on detection of gaseous nitric oxide using ferric dithiocarbamate complex functionalized quantum dots.

    Science.gov (United States)

    Sun, Jian; Yan, Yehan; Sun, Mingtai; Yu, Huan; Zhang, Kui; Huang, Dejian; Wang, Suhua

    2014-06-17

    Functional quantum dots (QDs) grafted with ferric dithiocarbamate complex layers (QDs-Fe(III)(DTC)3) were fabricated and demonstrated to be selectively reactive to nitric oxide. The dithiocarbamate (DTC) was covalently conjugated to the amine-coated QDs by a condensation reaction of the carboxyl in DTC and the amino polymer in surface of QDs. The weak fluorescence of QDs-Fe(III)(DTC)3 was attributed to the energy transfer between CdSe/ZnS and Fe(III)(DTC)3 complex at the surface of the functionalized quantum dots. Nitric oxide could greatly switch on the fluorescence of QDs-Fe(III)(DTC)3 by displacing the DTC in the Fe(III)(DTC)3 accompanied by reducing Fe(III) to Fe(II), thus shutting off the energy transfer way. The limit of detection for nitric oxide was estimated to be 3.3 μM and the specific detection was not interfered with other reactive oxygen species. Moreover, the probe was demonstrated for the sensing of gaseous nitric oxide, and the visual detection limit was as low as 10 ppm, showing the potential for sensing nitric oxide by the naked eye.

  18. Sulfur oxidation to sulfate coupled with electron transfer to electrodes by Desulfuromonas strain TZ1

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, T; Bain, TS; Barlett, MA; Dar, SA; Snoeyenbos-West, OL; Nevin, KP; Lovley, DR

    2014-01-02

    Microbial oxidation of elemental sulfur with an electrode serving as the electron acceptor is of interest because this may play an important role in the recovery of electrons from sulfidic wastes and for current production in marine benthic microbial fuel cells. Enrichments initiated with a marine sediment inoculum, with elemental sulfur as the electron donor and a positively poised (+300 mV versus Ag/AgCl) anode as the electron acceptor, yielded an anode biofilm with a diversity of micro-organisms, including Thiobacillus, Sulfurimonas, Pseudomonas, Clostridium and Desulfuromonas species. Further enrichment of the anode biofilm inoculum in medium with elemental sulfur as the electron donor and Fe(III) oxide as the electron acceptor, followed by isolation in solidified sulfur/Fe(III) medium yielded a strain of Desulfuromonas, designated strain TZ1. Strain TZ1 effectively oxidized elemental sulfur to sulfate with an anode serving as the sole electron acceptor, at rates faster than Desulfobulbus propionicus, the only other organism in pure culture previously shown to oxidize S with current production. The abundance of Desulfuromonas species enriched on the anodes of marine benthic fuel cells has previously been interpreted as acetate oxidation driving current production, but the results presented here suggest that sulfur-driven current production is a likely alternative.

  19. Anodic oxidation

    CERN Document Server

    Ross, Sidney D; Rudd, Eric J; Blomquist, Alfred T; Wasserman, Harry H

    2013-01-01

    Anodic Oxidation covers the application of the concept, principles, and methods of electrochemistry to organic reactions. This book is composed of two parts encompassing 12 chapters that consider the mechanism of anodic oxidation. Part I surveys the theory and methods of electrochemistry as applied to organic reactions. These parts also present the mathematical equations to describe the kinetics of electrode reactions using both polarographic and steady-state conditions. Part II examines the anodic oxidation of organic substrates by the functional group initially attacked. This part particular

  20. New approaches to reprocessing of oxide nuclear fuel.

    Science.gov (United States)

    Myasoedov, B F; Kulyako, Yu M

    Dissolution of UO2, U3O8, and solid solutions of actinides in UO2 in subacid aqueous solutions (pH 0.9-1.4) of Fe(III) nitrate was studied. Complete dissolution of the oxides is attained at a molar ratio of ferric nitrate to uranium of 1.6. During this process actinides pass into the solution in the form of U(VI), Np(V), Pu(III), and Am(III). In the solutions obtained U(VI) is stable both at room temperature and at elevated temperatures (60 °C), and at high U concentrations (up to 300 mg mL(-1)). Behavior of fission products corresponding to spent nuclear fuel of a WWER-1000 reactor in the process of dissolution the simulated spent nuclear fuel in ferric nitrate solutions was studied. Cs, Sr, Ba, Y, La, and Ce together with U pass quantitatively from the fuel into the solution, whereas Mo, Tc, and Ru remain in the resulting insoluble precipitate of basic Fe salt and do not pass into the solution. Nd, Zr, and Pd pass into the solution by approximately 50 %. The recovery of U or jointly U + Pu from the dissolution solution of the oxide nuclear fuel is performed by precipitation of their peroxides, which allows efficient separation of actinides from residues of fission products and iron.

  1. Microbial Mn(IV) and Fe(III) reduction in northern Barents Sea sediments under different conditions of ice cover and organic carbon deposition

    DEFF Research Database (Denmark)

    Nickel, Maren; Vandieken, Verona; Brüchert, Volker;

    2008-01-01

    reduction occurred simultaneously, and sulfate reduction dominated at 3-12 cm. Oxygen consumption rates (1.9 and 3.7 mmol m-2 d-1) and anaerobic CO2 production rates (1.3 and 6.4 mmol m-2 d-1) of both stations were similar to rates from open-ocean sediments farther north in the Barents Sea but lower......Carbon oxidation rates and pathways were determined in two sediments at latitude 75° and 77°N southeast of Svalbard in the northern Barents Sea. Seasonal ice cover restricts primary production to few months a year, which determines the sedimentation rate of organic material to the seafloor. At one...

  2. Redox reactions and the influence of natural Mn oxides on Cr oxidation in a contaminated site in northern Italy: evidence from Cr stable-isotopes and EPR spectroscopy

    Directory of Open Access Journals (Sweden)

    Marafatto F. F.

    2013-04-01

    Full Text Available Hexavalent chromium-contaminated groundwaters and sediments in northern Italy have been studied using the Cr stable-isotope systematics and electron spin resonance spectroscopy (ESR, in order to explore redox changes and soil-groundwater interactions. The isotopic data indicate a possible Cr(VI source released into the environment from an industrial plant. EPR spectra on the sediments which constitute the aquifers show a broad asymmetric absorption due to coupled Fe(III and coupled Cr(III ions and a well resolved hyperfine structure due to manganese ions, resulting from Mn(IV and Mn(II. The isotopic and EPR data support the hypothesis of Cr(III being oxidized by Mn oxides which are widespread in the aquifer, possibly related to the oscillation of the phreatic level. The obtained results highlight the usefulness of chromium stable isotopes as environmental tracers and support the observations that naturally occurring Mn oxides in soils may catalize Cr oxidation from the stable Cr(III form to the toxic Cr(VI soluble form, yielding valuable information in planning remediation interventions.

  3. Iron Oxides

    Energy Technology Data Exchange (ETDEWEB)

    Qafoku, Nikolla; Amonette, James E.

    2016-09-19

    Abstract: Fe oxides are common clay-sized oxide, oxyhydroxide and hydroxide soil minerals. They are compounds of Fe, O, and H that have structures based on close-packed arrays of O. The octahedral and tetrahedral cavities within these arrays are filled with either Fe3+ or Fe2+ to form Fe(O/OH)6, FeO6, or FeO4 structural units. All of the naturally occurring Fe oxide minerals usually undergo some degree of isomorphous substitution of other metal ions for Fe in their structures. Relatively simple techniques may be used to identify Fe oxides in the field based on their typical colors and magnetic properties. In the laboratory, a variety of instrumental techniques can be used to confirm phase identity and to quantify amount. Of these, X-ray diffraction, infrared spectroscopy, electron microscopy, thermal analysis, and Mössbauer spectroscopy are the most commonly used techniques. As oxides, the functional groups on their surfaces may have positive, negative, or no charge depending on pH and on the concentration and nature of other ions in the contact solution. A net positive surface charge usually is observed in soils because Fe oxides have a point-of-zero-charge in the neutral or slightly basic pHs. The functional groups on the surface form complexes with cations and anions from the aqueous phase. Their sorption and electron-buffering properties significantly affect the geochemical cycles of almost all elements having agronomic or environmental significance.

  4. Analysis of cbbL, nifH, and pufLM in Soils from the Sør Rondane Mountains, Antarctica, Reveals a Large Diversity of Autotrophic and Phototrophic Bacteria.

    Science.gov (United States)

    Tahon, Guillaume; Tytgat, Bjorn; Stragier, Pieter; Willems, Anne

    2016-01-01

    Cyanobacteria are generally thought to be responsible for primary production and nitrogen fixation in the microbial communities that dominate Antarctic ecosystems. Recent studies of bacterial communities in terrestrial Antarctica, however, have shown that Cyanobacteria are sometimes only scarcely present, suggesting that other bacteria presumably take over their role as primary producers and diazotrophs. The diversity of key genes in these processes was studied in surface samples from the Sør Rondane Mountains, Dronning Maud Land, using clone libraries of the large subunit of ribulose-1,5-biphosphate carboxylase/oxygenase (RuBisCO) genes (cbbL, cbbM) and dinitrogenase-reductase (nifH) genes. We recovered a large diversity of non-cyanobacterial cbbL type IC in addition to cyanobacterial type IB, suggesting that non-cyanobacterial autotrophs may contribute to primary production. The nifH diversity recovered was predominantly related to Cyanobacteria, particularly members of the Nostocales. We also investigated the occurrence of proteorhodopsin and anoxygenic phototrophy as mechanisms for non-Cyanobacteria to exploit solar energy. While proteorhodopsin genes were not detected, a large diversity of genes coding for the light and medium subunits of the type 2 phototrophic reaction center (pufLM) was observed, suggesting for the first time, that the aerobic photoheterotrophic lifestyle may be important in oligotrophic high-altitude ice-free terrestrial Antarctic habitats.

  5. Liquid-liquid extraction (LLE) of Fe(III) and Ti(IV) by bis-(2-ethyl-hexyl) phosphoric acid (D2EHPA) in sulfuric acid medium; Extracao liquido-liquido de ferro (III) e titanio (IV) pelo acido bis-(2-etil-hexil) fosforico (D2EHPA) em meio de acido sulfurico

    Energy Technology Data Exchange (ETDEWEB)

    Silva, Glauco Correa da; Cunha, Jose Waldemar Silva Dias da [Instituto de Engenharia Nuclear (IEN), Rio de Janeiro, RJ (Brazil). Dept. de Quimica e Materiais Nucleares; Dweck, Jo [Universidade Federal do Rio de Janeiro (UFRJ), RJ (Brazil). Escola de Quimica. Dept. de Processos Inorganicos; Afonso, Julio Carlos [Universidade Federal do Rio de Janeiro (UFRJ), RJ (Brazil). Inst. de Quimica. Dept. de Quimica Analitica]. E-mail: julio@iq.ufrj.br

    2008-07-01

    This work presents a study on the separation of Fe(III) and Ti(IV) from sulfuric acid leaching solutions of ilmenite (FeTiO{sub 3}) using liquid-liquid extraction with D2EHPA in n-dodecane as extracting agent. The distribution coefficients (K{sub D}) of the elements related to free acidity and concentration of Fe(III) and Ti(IV) were determined. Free acidity was changed from 3x10{sup -2} to 11.88 mol L{sup -1} and D2EHPA concentration was fixed at 1.5 mol L{sup 1}. Recovery of final products as well as recycling of wastes generated in the process were also investigated. The LLE process as a feasible alternative to obtain high-purity TiO{sub 2}. (author)

  6. Crystal structure of K0.75[FeII3.75FeIII1.25(HPO36]·0.5H2O, an open-framework iron phosphite with mixed-valent FeII/FeIII ions

    Directory of Open Access Journals (Sweden)

    Edurne S. Larrea

    2016-01-01

    Full Text Available Single crystals of the title compound, potassium hexaphosphitopentaferrate(II,III hemihydrate, K0.75[FeII3.75FeIII1.25(HPO36]·0.5H2O, were grown under mild hydrothermal conditions. The crystal structure is isotypic with Li1.43[FeII4.43FeIII0.57(HPO36]·1.5H2O and (NH42[FeII5(HPO36] and exhibits a [FeII3.75FeIII1.25(HPO36]0.75− open framework with disordered K+ (occupancy 3/4 as counter-cations. The anionic framework is based on (001 sheets of two [FeO6] octahedra (one with point group symmetry 3.. and one with point group symmetry .2. linked along [001] through [HPO3]2− oxoanions. Each sheet is constructed from 12-membered rings of edge-sharing [FeO6] octahedra, giving rise to channels with a radius of ca 3.1 Å where the K+ cations and likewise disordered water molecules (occupancy 1/4 are located. O...O contacts between the water molecule and framework O atoms of 2.864 (5 Å indicate hydrogen-bonding interactions of medium strength. The infrared spectrum of the compound shows vibrational bands typical for phosphite and water groups. The Mössbauer spectrum is in accordance with the presence of FeII and FeIII ions.

  7. The δ15N and δ18O values of N2O produced during the co-oxidation of ammonia by methanotrophic bacteria

    Science.gov (United States)

    Mandernack, Kevin W.; Mills, Christopher T.; Johnson, Craig A.; Rahn, Thomas; Kinney, Chad

    2009-01-01

    In order to determine if the δ15N and δ18O values of N2O produced during co-oxidation of NH4+ by methanotrophic (methane oxidizing) bacteria can be isotopically distinguished from N2O produced either by autotrophic nitrifying or denitrifying bacteria, we conducted laboratory incubation experiments with pure cultures of methanotrophic bacteria that were provided NH4Cl as an oxidation substrate. The N2O produced during NH4+ oxidation by methanotrophic bacteria showed nitrogen isotope fractionation between NH4+ and N2O (εN2O–NH4+) of − 48 and − 55‰ for Methylomonas methanica and Methylosinus trichosporium, OB3b respectively. These large fractionations are similar to those previously measured for autotrophic nitrifying bacteria and consistent with N2O formation by multiple rate limiting steps that include NH4+oxidation by the methane monooxygenase enzyme and reduction of NO2− to N2O. Consequently, N2O formed by NH4+ oxidation via methanotrophic or autotrophic nitrifying bacteria might generally be characterized by lower δ15NN2O values than that formed by denitrificaiton, although this also depends on the variability of δ15N of available nitrogen sources (e.g., NH4+, NO3−, NO2−). Additional incubations with M. trichosporium OB3b at high and low CH4 conditions in waters of different δ18O values revealed that 19–27% of the oxygen in N2O was derived from O2 with the remainder from water. The biochemical mechanisms that could explain this amount of O2 incorporation are discussed. The δ18O of N2O formed under high CH4 conditions was ~ + 15‰ more positive than that formed under lower CH4 conditions. This enrichment resulted in part from the incorporation of O2 into N2O that was enriched in 18O due to an isotope fractionation effect of − 16.1 ± 2.0‰ and − 17.5 ± 5.4‰ associated with O2 consumption during the high and low methane concentration incubations, respectively. Therefore, N2O formed by NH4+ oxidation

  8. Changes in physiological activity of algae Desmodesmus quadricauda after active bioaccumulation of newly prepared and characterized Fe(III) complexes with pyridine-3-carboxamide (pca) by living algal cells.

    Science.gov (United States)

    Fargasová, Agáta; Ondrejkovicová, Iveta; Kramarová, Zuzana; Fáberová, Zuzana

    2010-08-01

    The study characterized five iron(III) complexes with heterocyclic N-donor ligand pyridine-3-carboxamide (pca) [FeCl(3)(pca)(3)], [Fe(H(2)O)(2)(pca)(3)](ClO(4))(3), [Fe(2)O(ac)(2)(pca)(6)]Cl(2).3H(2)O, [Fe(NO(3))(3)(pca)(3)].3H(2)O, [Fe(Cl(2)ac)(3)(pca)(3)] (ac=acetate, Cl(2)ac=dichloroacetate) and their effects on biomass, chlorophylls (a, b), photosynthetic oxygen production and iron biosorption in algae Desmodesmus quadricauda. The effects of Fe(III) complexes were compared with control and those of FeCl(3).6H(2)O. While pca coordination to iron atom through the nitrogen atom of its heterocyclic ring mostly increased iron inhibitory effect on algal biomass and chlorophylls production, oxygen production was enhanced. The exceptions were observed only for [Fe(2)O(ac)(2)(pca)(6)]Cl(2).3H(2)O complex effect on biomass and oxygen production and [Fe(H(2)O)(2)(pca)(3)](ClO(4))(3) complex effect on chlorophylls production. Complexation increased iron biosorption in algal biomass and iron accumulated amount in algae was 2.8-20 times higher than that from FeCl(3).6H(2)O with maximal accumulation from dimeric complex [Fe(2)O(ac)(2)(pca)(6)]Cl(2).3H(2)O.

  9. Comparative ligational, optical band gap and biological studies on Cr(III) and Fe(III) complexes of hydrazones derived from 2-hydrazinyl-2-oxo-N-phenylacetamide with both vanillin and O-vanillin

    Science.gov (United States)

    Yousef, T. A.; Abu El-Reash, G. M.; Attia, M. I.; El-Tabai, M. N.

    2015-09-01

    The Cr(III) and Fe(III) complexes of hydrazones derived from the condensation of 2-hydrazinyl-2-oxo-N-phenylacetamide with both vanillin and o-vanillin synthesized and characterized by different conventional physicochemical techniques. The kinetic and thermodynamic parameters for the different decomposition steps were calculated using Coats-Redfern and Horowitz-Metzger equations. The bond lengths, bond angles, HOMO, LUMO, dipole moment and binding energy calculated by DFT calculations. The optical band gap (Eg) values equal 3.28, 3.03, 3.58 and 3.57 eV for [Cr(HL1)Cl2(H2O)2](0.75H2O), [Cr(HL2)Cl2(H2O)](H2O), [Fe(HL1)Cl2(H2O)2](0.5H2O) and [Fe(HL2)2Cl(H2O)](3H2O) complexes, respectively. The antibacterial activities tested against Bacillus subtilis and Escherichia coli bacteria.

  10. Antimicrobial, spectral, magnetic and thermal studies of Cu(II), Ni(II), Co(II), UO(2)(VI) and Fe(III) complexes of the Schiff base derived from oxalylhydrazide.

    Science.gov (United States)

    Melha, Khlood Abou

    2008-04-01

    The Schiff base ligand, oxalyl [( 2 - hydroxybenzylidene) hydrazone] [corrected].H(2)L, and its Cu(II), Ni(II), Co(II), UO(2)(VI) and Fe(III) complexes were prepared and tested as antibacterial agents. The Schiff base acts as a dibasic tetra- or hexadentate ligand with metal cations in molar ratio 1:1 or 2:1 (M:L) to yield either mono- or binuclear complexes, respectively. The ligand and its metal complexes were characterized by elemental analyses, IR, (1)H NMR, Mass, and UV-Visible spectra and the magnetic moments and electrical conductance of the complexes were also determined. For binuclear complexes, the magnetic moments are quite low compared to the calculated value for two metal ions complexes and this shows antiferromagnetic interactions between the two adjacent metal ions. The ligand and its metal complexes were tested against a Gram + ve bacteria (Staphylococcus aureus), a Gram -ve bacteria (Escherichia coli), and a fungi (Candida albicans). The tested compounds exhibited high antibacterial activities.

  11. Structural, magnetic and optical properties of an Fe(III) dimer bridged by the meridional planar divergent N,N'-bis(salicyl)hydrazide and its photo- and electro-chemistry in solution.

    Science.gov (United States)

    Cheaib, Khaled; Martel, David; Clément, Nicolas; Eckes, Fabrice; Kouaho, Stéphanie; Rogez, Guillaume; Dagorne, Samuel; Kurmoo, Mohamedally; Choua, Sylvie; Welter, Richard

    2013-02-07

    {Fe(III)Cl(DMF)(2)}(2)(L) where L is N,N'-bis(salicyl)hydrazide has been synthesized as red crystals and characterized using single-crystal diffraction, infrared and UV-vis spectroscopies, and its magnetic properties studied. The dimeric unit in the structure is formed through the two meridional sets of divergent O, N, O coordinating atoms of the hexacoordinated and quadruply charged ligand. With the presence of the inversion symmetry the Fe atoms are strictly planar with the ligand. The magnetic exchange interaction is found to be antiferromagnetic with a J = -5.98(3) cm(-1) through the rare Fe-N-N-Fe pathway. Irradiation of the FeCl(3)/H(4)L red DMF solution in the visible region of the spectrum resulted in its complete discoloration and from which the unknown colorless salt [Fe(II)(DMF)(6)][Fe(II)Cl(4)] and the neutral ligand have been identified by single crystal diffraction. The UV-visible spectra of FeCl(3), H(4)L and their mixture in DMF solution indicate that the iron complex is the absorbing species and the presence of the free ligand in the irradiated solution suggests that the ligand is potentially acting as a catalyst to the photoreduction of Fe(III) to Fe(II), while electrochemistry points to a mixed-valent (Fe(II)-Fe(III)) intermediate in the process.

  12. Batch adsorptive removal of Fe(III, Cu(II and Zn(II ions in aqueous and aqueous organic–HCl media by Dowex HYRW2-Na Polisher resin as adsorbents

    Directory of Open Access Journals (Sweden)

    Abdul-Aleem Soliman Aboul-Magd

    2016-09-01

    Full Text Available Of the metal ions in tap, Nile, waste and sea water samples and some ores were carried out. Removal of heavy metal ions such as Fe(III, Cd(II, Zn(II, Cu(II, Mn(II, Mg(II, and Pb(II from water and wastewater is obligatory in order to avoid water pollution. Batch shaking adsorption experiments to evaluate the performance of nitric and hydrochloric acid solutions in the removal of metal ions by cation exchange resin at the same conditions for both, such as the effect of initial metal ion concentration, different proportions of some organic solvents, H+-ion concentrations and reaction temperature on the partition coefficients. The metal adsorption for the cation exchanger was found to be significant in different media for both nitric and hydrochloric acids, i.e., the adsorption up take of metal ions presented in this work is very significant depending on the characteristics of ions and on the external concentrations of solute. The presence of low ionic strength or low concentration of acids does have a significant adsorption of metal ions on ion-exchange resin. The results show that the ion exchanger could be employed for the preconcentration, separation and the determination.

  13. An experimental design to optimize the flow extraction parameters for the selective removal of Fe(III) and Al(III) in aqueous samples using salicylic acid grafted on Amberlite XAD-4 and final determination by GF-AAS.

    Science.gov (United States)

    Vanloot, P; Boudenne, J-L; Brach-Papa, C; Sergent, M; Coulomb, B

    2007-08-17

    In this paper, a multivariable approach has been applied for the selective removing of Fe(III) and Al(III), in the range 0-200 microg l(-1), in water samples onto a modified organic support (salicylic acid grafted on XAD-4). An empirical mathematical model was designed which establishes the relationship between the variation of the responses (extraction yields), and the variation of three factors (sample volume, sample percolation flow rate and amount of metallic ions present in the sample). To estimate the coefficients of the developed model, an uniform shell Doehlert design has been applied; these experiments consisted in GF-AAS determination of aluminium and iron amounts in eluates after percolation of samples through modified support. Results show a similar behaviour of the resin towards aluminium and iron with a preponderant effect of the percolation flow rate value; however this one is crucial for aluminium extraction and should be maintained below to 0.55 ml min(-1) to reach a 95% Al3+ extraction yield (versus 2.25 ml min(-1) for Fe3+). The optima determined by this experimental design approach have been further applied to the selective extraction of aluminium and iron from multielement synthetic samples and from real samples at the outlet of potable water treatment units.

  14. Hydrothermal Synthesis and Properties of Open-Framework Mixed-valence Iron Phosphates FeIII2FeII1.5(PO4)3 with Three-dimensional Structure

    Institute of Scientific and Technical Information of China (English)

    DUAN,Li-Ying(段丽颖); LIU,Fu-Chen(刘福臣); WANG,En-Bo(王恩波); LI,Yang-Guang(李阳光); HU,Chang-Wen(胡长文); XU,Lin(许林)

    2004-01-01

    The open-framework iron phosphate FeIII2FeII1.5(PO4)3 was hydrothermally synthesized and characterized by elemental analysis, IR, EPR, XPS and single crystal X-ray diffraction analysis. The title compound crystallized in the triclinic, space group P1 with a=0.64724(4) nm, b=0.79651(6) nm, c=0.94229(5) nm, α=104.447(2)°, β=108.919(4)°, γ=101.741(4)°, V=0.42302(5) nm3, Z=1 and R1 (wR2)=0.0307 (0.0793). Crystal data were collected on a Rigaku R-AXIS RAPID IP diffractometer with Mo Kα (λ=0.071073 nm) at 293(2) K in the range of 2.43°<θ<27.46°. The structure of 1 consists of 19 non-hydrogen atoms including three and a half crystallographically independent Fe and three P atoms. Fe(1) connects its symmetrical Fe(1A) through bridging oxygen forming a dimer and the dimers are connected by Fe(4) forming an infinite staircase-like chain. Fe(2) and Fe(3) connect the infinite chains into a layer with bridging oxygen. Layers are interconnected via Fe(4) forming the six-membered and eight-membered channel systems.

  15. Chitosan film loaded with silver nanoparticles-sorbent for solid phase extraction of Al(III), Cd(II), Cu(II), Co(II), Fe(III), Ni(II), Pb(II) and Zn(II).

    Science.gov (United States)

    Djerahov, Lubomir; Vasileva, Penka; Karadjova, Irina; Kurakalva, Rama Mohan; Aradhi, Keshav Krishna

    2016-08-20

    The present study describes the ecofriendly method for the preparation of chitosan film loaded with silver nanoparticles (CS-AgNPs) and application of this film as efficient sorbent for separation and enrichment of Al(III), Cd(II), Cu(II), Co(II), Fe(III), Ni(II), Pb(II) and Zn(II). The stable CS-AgNPs colloid was prepared by dispersing the AgNPs sol in chitosan solution at appropriate ratio and further used to obtain a cast film with very good stability under storage and good mechanical strength for easy handling in aqueous medium. The incorporation of AgNPs in the structure of CS film and interaction between the polymer matrix and nanoparticles were confirmed by UV-vis and FTIR spectroscopy. The homogeneously embedded AgNPs (average diameter 29nm, TEM analysis) were clearly observed throughout the film by SEM. The CS-AgNPs nanocomposite film shows high sorption activity toward trace metals under optimized chemical conditions. The results suggest that the CS-AgNPs nanocomposite film can be feasibly used as a novel sorbent material for solid-phase extraction of metal pollutants from surface waters.

  16. Synthesis, characterization and performance in arsenic removal of iron-doped activated carbons prepared by impregnation with Fe(III) and Fe(II).

    Science.gov (United States)

    Muñiz, G; Fierro, V; Celzard, A; Furdin, G; Gonzalez-Sánchez, G; Ballinas, M L

    2009-06-15

    Arsenic removal from natural well water from the state of Chihuahua (Mexico) is investigated by adsorption using a commercial activated carbon (AC). The latter is used as such, or after oxidation by several chemicals in aqueous solution: nitric acid, hydrogen peroxide, and ammonium persulphate. Raw and oxidised activated carbons are fully characterised (elementary analysis, surface chemistry, pore texture parameters, pH(ZC), and TEM observation). Adsorption of As is measured in the aforementioned water, containing ca. 300 ppb of arsenic: removal of As is poor with the raw AC, and only the most oxidised carbons exhibit higher performances. By contrast, iron-doped ACs are much more efficient for that purpose, though their As uptake strongly depends on their preparation conditions: a number of samples were synthesised by impregnation of raw and oxidised ACs with HCl aqueous solutions of either FeCl(3) or FeCl(2) at various concentrations and various pH. It is shown that iron(II) chloride is better for obtaining high iron contents in the resultant ACs (up to 8.34 wt.%), leading to high As uptake, close to 0.036 mg As/g C. In these conditions, 100% of the As initially present in the natural well water is removed, as soon as the Fe content of the adsorbent is higher than 2 wt.%.

  17. Biological Oxidation of Fe(II) in Reduced Nontronite Coupled with Nitrate Reduction by Pseudogulbenkiania sp. Strain 2002

    Energy Technology Data Exchange (ETDEWEB)

    Zhao, Linduo; Dong, Hailiang; Kukkadapu, Ravi K.; Agrawal, A.; Liu, Deng; Zhang, Jing; Edelmann, Richard E.

    2013-10-15

    Nitrate contamination in soils, sediments, and water bodies is a significant issue. Although much is known about nitrate degradation in these environments, especially via microbial pathways, a complete understanding of all degradation processes, especially in clay mineral-rich soils, is still lacking. The objective of this study was to study the potential of removing nitrate contaminant using structural Fe(II) in clay mineral nontronite. Specifically, the coupled processes of microbial oxidation of Fe(II) in microbially reduced nontronite (NAu-2) and nitrate reduction by Pseudogulbenkiania species strain 2002 was investigated. Bio-oxidation experiments were conducted in bicarbonate-buffered medium under both growth and nongrowth conditions. The extents of Fe(II) oxidation and nitrate reduction were measured by wet chemical methods. X-ray diffraction (XRD), scanning and transmission electron microscopy (SEM and TEM), and 57Fe-Mössbauer spectroscopy were used to observe mineralogical changes associated with Fe(III) reduction and Fe(II) oxidation in nontronite. The bio-oxidation extent under growth and nongrowth conditions reached 93% and 57%, respectively. Over the same time period, nitrate was completely reduced under both conditions to nitrogen gas (N2), via an intermediate product nitrite. Magnetite was a mineral product of nitrate-dependent Fe(II) oxidation, as evidenced by XRD data and TEM diffraction patterns. The results of this study highlight the importance of iron-bearing clay minerals in the global nitrogen cycle with potential applications in nitrate removal in soils.

  18. Fe(III) and Fe(II) ions different effects on Enterococcus hirae cell growth and membrane-associated ATPase activity

    Energy Technology Data Exchange (ETDEWEB)

    Vardanyan, Zaruhi [Department of Biophysics of the Biology Faculty, Yerevan State University, 1 A. Manoukian Str., 0025 Yerevan (Armenia); Trchounian, Armen, E-mail: trchounian@ysu.am [Department of Biophysics of the Biology Faculty, Yerevan State University, 1 A. Manoukian Str., 0025 Yerevan (Armenia)

    2012-01-06

    Highlights: Black-Right-Pointing-Pointer Fe{sup 3+} stimulates but Fe{sup 2+} suppresses Enterococcus hirae wild-type and atpD mutant growth. Black-Right-Pointing-Pointer Fe ions change oxidation-reduction potential drop during cell growth. Black-Right-Pointing-Pointer Fe{sup 3+} and Fe{sup 2+} have opposite effects on a membrane-associated ATPase activity. Black-Right-Pointing-Pointer These effects are either in the presence of F{sub 0}F{sub 1} inhibitor or non-functional F{sub 0}F{sub 1}. Black-Right-Pointing-Pointer Fe ions decrease protons and coupled potassium ions fluxes across the membrane. -- Abstract: Enterococcus hirae is able to grow under anaerobic conditions during glucose fermentation (pH 8.0) which is accompanied by acidification of the medium and drop in its oxidation-reduction potential (E{sub h}) from positive values to negative ones (down to {approx}-200 mV). In this study, iron (III) ions (Fe{sup 3+}) have been shown to affect bacterial growth in a concentration-dependent manner (within the range of 0.05-2 mM) by decreasing lag phase duration and increasing specific growth rate. While iron(II) ions (Fe{sup 2+}) had opposite effects which were reflected by suppressing bacterial growth. These ions also affected the changes in E{sub h} values during bacterial growth. It was revealed that ATPase activity with and without N,N Prime -dicyclohexylcarbodiimide (DCCD), an inhibitor of the F{sub 0}F{sub 1}-ATPase, increased in the presence of even low Fe{sup 3+} concentration (0.05 mM) but decreased in the presence of Fe{sup 2+}. It was established that Fe{sup 3+} and Fe{sup 2+} both significantly inhibited the proton-potassium exchange of bacteria, but stronger effects were in the case of Fe{sup 2+} with DCCD. Such results were observed with both wild-type ATCC9790 and atpD mutant (with defective F{sub 0}F{sub 1}) MS116 strains but they were different with Fe{sup 3+} and Fe{sup 2+}. It is suggested that the effects of Fe{sup 3+} might be due to

  19. An alternative reaction for heme degradation catalyzed by the Escherichia coli O157:H7 ChuS protein: Release of hematinic acid, tripyrrole and Fe(III).

    Science.gov (United States)

    Ouellet, Yannick H; Ndiaye, Cheikh Tidiane; Gagné, Stéphane M; Sebilo, Anne; Suits, Michael D L; Jubinville, Éric; Jia, Zongchao; Ivancich, Anabella; Couture, Manon

    2016-01-01

    As part of the machinery to acquire, internalize and utilize heme as a source of iron from the host, some bacteria possess a canonical heme oxygenase, where heme plays the dual role of substrate and cofactor, the later catalyzing the cleavage of the heme moiety using O2 and electrons, and resulting in biliverdin, carbon monoxide and ferrous non-heme iron. We have previously reported that the Escherichia coli O157:H7 ChuS protein, which is not homologous to heme oxygenases, can bind and degrade heme in a reaction that releases carbon monoxide. Here, we have pursued a detailed characterization of such heme degradation reaction using stopped-flow UV-visible absorption spectrometry, the characterization of the intermediate species formed in such reaction by EPR spectroscopy and the identification of reaction products by NMR spectroscopy and Mass spectrometry. We show that hydrogen peroxide (in molar equivalent) is the key player in the degradation reaction, at variance to canonical heme oxygenases. While the initial intermediates of the reaction of ChuS with hydrogen peroxide (a ferrous keto π neutral radical and ferric verdoheme, both identified by EPR spectroscopy) are in common with heme oxygenases, a further and unprecedented reaction step, involving the cleavage of the porphyrin ring at adjacent meso-carbons, results in the release of hematinic acid (a monopyrrole moiety identified by NMR spectroscopy), a tripyrrole product (identified by Mass spectrometry) and non-heme iron in the ferric oxidation state (identified by EPR spectroscopy). Overall, the unprecedented reaction of E. coli O157:H7 ChuS provides evidence for a novel heme degradation activity in a Gram-negative bacterium.

  20. Microbial mediated iron redox cycling in Fe (hydr)oxides for nitrite removal.

    Science.gov (United States)

    Lu, Yongsheng; Xu, Lu; Shu, Weikang; Zhou, Jizhi; Chen, Xueping; Xu, Yunfeng; Qian, Guangren

    2017-01-01

    Nitrite, at an environmentally relevant concentration, was significantly reduced with iron (hydr)oxides mediated by Shewanella oneidensis MR-1. The average nitrite removal rates of 1.28±0.08 and 0.65±0.02(mgL(-1))h(-1) were achieved with ferrihydrite and magnetite, respectively. The results showed that nitrite removal was able to undergo multiple redox cycles with iron (hydr)oxides mediated by Shewanella oneidensis MR-1. During the bioreduction of the following cycles, biogenic Fe(II) was subsequently chemically oxidized to Fe(III), which is associated with nitrite reduction. There was 11.18±1.26mgL(-1) of NH4(+)-N generated in the process of redox cycling of ferrihydrite. Additionally, results obtained by using X-ray diffraction showed that ferrihydrite and magnetite remained mainly stable in the system. This study indicated that redox cycling of Fe in iron (hydr)oxides was a potential process associated with NO2(-)-N removal from solution, and reduced most nitrite abiotically to gaseous nitrogen species.

  1. Oxidation catalyst

    Science.gov (United States)

    Ceyer, Sylvia T.; Lahr, David L.

    2010-11-09

    The present invention generally relates to catalyst systems and methods for oxidation of carbon monoxide. The invention involves catalyst compositions which may be advantageously altered by, for example, modification of the catalyst surface to enhance catalyst performance. Catalyst systems of the present invention may be capable of performing the oxidation of carbon monoxide at relatively lower temperatures (e.g., 200 K and below) and at relatively higher reaction rates than known catalysts. Additionally, catalyst systems disclosed herein may be substantially lower in cost than current commercial catalysts. Such catalyst systems may be useful in, for example, catalytic converters, fuel cells, sensors, and the like.

  2. Determination of an Effective Perfluorinated Compounds (PFCs) Oxidation Method

    Science.gov (United States)

    Siriwardena, D. P.; Crimi, M.; Holsen, T.; Bellona, C.

    2014-12-01

    Perfluoroalkyl and polyfluoroalkyl substances (PFASs) are a stable synthetic class of chemicals ubiquitously spread in environmental media (i.e. air, soil, biota, surface water and groundwater). The substances' strong polar carbon-fluorine bonds and their high thermal and chemical stability make them resistant to biological, chemical, and physical degradation. The purpose of this research is to identify the most effective oxidation method to treat perfluorinated compounds (PFCs) and their by-products that is suitable for in situ application. The laboratory oxidation study focuses on the more commonly detected and studied long-chain (C-8) PFAS; perfluorooctanoic acids (PFOA) and perfluorooctane sulfonic acid (PFOS). Existing research evaluating oxidizing treatment effectiveness on perfluoroalkyl sulfoinoic acids (PFSAs) is limited. A review of the literature and results from preliminary studies indicate that activated persulfate and catalyzed hydrogen peroxide propagation (CHP) reactions appear to be promising oxidants for PFOA. It has been demonstrated that the reactivity of superoxide in water increases in the presence of hydrogen peroxide (H2O2) and solids. Superoxide generated in CHP reactions degrades PFOA seemingly similar to superoxide-mediated destruction of the perhalogenated compounds.The goal of this study is to look at conditions that promote generation of superoxide and look at PFASs treatment effectiveness and byproduct generation. CHP reactions are conducted with varying amount of H2O2 and Fe(III) to determine the optimum conditions for PFC degradation. Results will be compared to those of another experiment using manganese dioxide as a CHP catalyst with varied H2O2 concentration to generate superoxide to degrade PFASs. Activated persulfate conditions to be compared include alkaline pH activation, heat activation, and dual oxidation (combined H2O2 and persulfate ). This presentation will focus on a comparison of oxidation effectiveness under the

  3. How different oxidation states of crystalline myoglobin are influenced by X-rays.

    Science.gov (United States)

    Hersleth, Hans-Petter; Andersson, K Kristoffer

    2011-06-01

    X-ray induced radiation damage of protein crystals is well known to occur even at cryogenic temperatures. Redox active sites like metal sites seem especially vulnerable for these radiation-induced reductions. It is essential to know correctly the oxidation state of metal sites in protein crystal structures to be able to interpret the structure-function relation. Through previous structural studies, we have tried to characterise and understand the reactions between myoglobin and peroxides. These reaction intermediates are relevant because myoglobin is proposed to take part as scavenger of reactive oxygen species during oxidative stress, and because these intermediates are similar among the haem peroxidases and oxygenases. We have in our previous studies shown that these different myoglobin states are influenced by the X-rays used. In this study, we have in detail investigated the impact that X-rays have on these different oxidation states of myoglobin. An underlying goal has been to find a way to be able to determine mostly unreduced states. We have by using single-crystal light absorption spectroscopy found that the different oxidation states of myoglobin are to a different extent influenced by the X-rays (e.g. ferric Fe(III) myoglobin is faster reduced than ferryl Fe(IV)═O myoglobin). We observe that the higher oxidation states are not reduced to normal ferrous Fe(II) or ferric Fe(III) states, but end up in some intermediate and possibly artificial states. For ferric myoglobin, it seems that annealing of the radiation-induced/reduced state can reversibly more or less give the starting point (ferric myoglobin). Both scavengers and different dose-rates might influence to which extent the different states are affected by the X-rays. Our study shows that it is essential to do a time/dose monitoring of the influence X-rays have on each specific redox-state with spectroscopic techniques like single-crystal light absorption spectroscopy. This will determine to which

  4. 城市污水厂活性污泥强化自养反硝化菌研究%Experimental Study of Autotrophic Denitrification Bacteria Through Bioaugmentation of Activated Sludge from Municipal Wastewater Plant

    Institute of Scientific and Technical Information of China (English)

    常玉梅; 杨琦; 郝春博; 尚海涛; 姜体胜

    2011-01-01

    Activated sludge of municipal wastewater treatment plant was domesticated by sulfur as the electron donor under autotrophic.The sludge activity was determined by measuring growth rate of sludge. The removal efficiency of nitrate and sulfate production efficiency were analyzed by continuously measuring the concentration of NO3- -N and S024-. When the removal efficiency of nitrate was more than 90%, 16S rRNA genetic libraries were built up to compare their microbial biodiversity. The growth rate of sludge is 0.177 g/( L· d). The relation between concentration of nitrate and time meets first order reaction kinetics. The bacteria in the sludge affiliated with Beta-Proteobacteria, Deta-Proteobacteria, Gamma-Proteobacteria and Unclassified bacteria. Beta-Proteobacteria is the main phylum in the sludge. Bacteria related to Thiobacillus denitrificans from denitrifying bioreaetor perform 48.65%. In addition, the bacteria of Denitratisoma sp. , Curvibacter sp. , Thermomonas sp. Geobacter sp. are existed in the sludge. The study of autotrophic denitrifying bacteria diversity is conducive to optimization of reaction conditions and efficient removal of nitrate.%采集北京高碑店城市污水厂的反硝化污泥样品,以硫磺作为电子供体进行驯化培养.测定污泥的增长率来确定污泥活性,分别测定NO-N、SO浓度来确定硝酸盐的去除效率和硫酸盐生成速率.当硝酸盐去除率达到90%以上时,提取污泥中微生物总DNA,构建16S rRNA基因片段克隆文库来分析细菌群落结构,结果表明,污泥的增长率为0.177 g/(L·d),污泥中硝酸盐浓度与时间的关系符合一级反应.污泥中细菌类群主要为Beta-Proteobacteria、Deta-Proteobacteria、Gamma-Proteobacteria和Unclassified bacteria,其中Beta-Proteobacteria类细菌占主导地位.在成熟的反硝化污泥中,自养反硝化菌Thiobacillusdenitrificans占所占比例高达48.65%.此外,反应器中还存在Denitratisoma sp.、Curvibacter sp

  5. Experiments on Sulphur-Based Autotrophic Denitrification under Condition of Different Carriers%不同载体条件的硫自养反硝化脱氮试验

    Institute of Scientific and Technical Information of China (English)

    袁莹; 周伟丽; 王晖

    2012-01-01

    Sulphur-based autotrophic denitrification was applied to treat the low concentration nitrate-contaminated water in this paper. Granular activated carbon and biological ceramsite were used as the carriers, forming the biological activated carbon (2#) system and biological ceramsite (3#) system, respectively. The two systems were compared with anaerobic sludge (1#) system without carrier. When the low concentration nitrate—contaminated water was 13 mg/L, it took 40 days for system 1# to achieve successful start—up, 10 days for system 2#, and 30 days for system 3#. In anaerobic sludge (1#) system only 82 % nitrate and 53 % TN were removed with unstable denitrification effect, and hydraulic retention time (HRT) remained as long as 5-6 h; while a high NO3--N and TN removal rate of about 100 % and 83 % were achieved in biological activated carbon (2#) system without accumulation of NO2--N, and the shortest HRT reached 1 h; in biological ceramsite (3#) system 96 % nitrate and 82 % TN were removed without any accumulation of NO2--N, and the shortest HRT was 0.5 h. Therefore, choosing suitable carrier was necessary and beneficial for the autotrophic denitrification process to achieve higher treatment efficiency and lower running cost.%采用硫自养反硝化法处理模拟低浓度硝酸盐废水,以颗粒活性炭和陶粒作为微生物的载体,分别形成生物活性炭系统(2#系统)和生物陶粒系统(3#系统),并与不加载体的絮状污泥系统(1#系统)对比.结果表明在进水NO3--N浓度为13 mg/L的条件下,1#启动成功需40 d左右、2#需10 d左右、3#需30 d左右;1#系统的NO3--N和TN去除率分别为82%和53%,脱氮效果不稳定,水力停留时间(iRT)为5~6 h;2#系统的最低HRT达到1h,NO3--N去除率接近100%,TN去除率达到83%,且无NO2--N的积累;3#系统的去除效果与2#相近,NO3--N去除率达到96%,TN去除率达到82%,也无NO2--N的积累,并且HRT可以降至0.5 h.由此表明在硫自养反

  6. Oxidative stress

    Directory of Open Access Journals (Sweden)

    Stevanović Jelka

    2012-01-01

    Full Text Available The unceasing need for oxygen is in contradiction to the fact that it is in fact toxic to mammals. Namely, its monovalent reduction can have as a consequence the production of short-living, chemically very active free radicals and certain non-radical agents (nitrogen-oxide, superoxide-anion-radicals, hydroxyl radicals, peroxyl radicals, singlet oxygen, peroxynitrite, hydrogen peroxide, hypochlorous acid, and others. There is no doubt that they have numerous positive roles, but when their production is stepped up to such an extent that the organism cannot eliminate them with its antioxidants (superoxide-dismutase, glutathione-peroxidase, catalase, transferrin, ceruloplasmin, reduced glutathion, and others, a series of disorders is developed that are jointly called „oxidative stress.“ The reactive oxygen species which characterize oxidative stress are capable of attacking all main classes of biological macromolecules, actually proteins, DNA and RNA molecules, and in particular lipids. The free radicals influence lipid peroxidation in cellular membranes, oxidative damage to DNA and RNA molecules, the development of genetic mutations, fragmentation, and the altered function of various protein molecules. All of this results in the following consequences: disrupted permeability of cellular membranes, disrupted cellular signalization and ion homeostasis, reduced or loss of function of damaged proteins, and similar. That is why the free radicals that are released during oxidative stress are considered pathogenic agents of numerous diseases and ageing. The type of damage that will occur, and when it will take place, depends on the nature of the free radicals, their site of action and their source. [Projekat Ministarstva nauke Republike Srbije, br. 173034, br. 175061 i br. 31085

  7. Isolation and identification of moderately thermophilic acidophilic iron-oxidizing bacterium and its bioleaching characterization

    Institute of Scientific and Technical Information of China (English)

    ZENG Wei-min; WU Chang-bin; ZHANG Ru-bing; HU Pei-lei; QIU Guan-zhou; GU Guo-hua; ZHOU Hong-bo

    2009-01-01

    A moderately thermophilic acidophilic iron-oxidizing bacterium ZW-1 was isolated from Dexing mine, Jiangxi Province, China. The morphological, biochemical and physiological characteristics, 16S rRNA sequence and bioleaching characterization of strain ZW-1 were studied. The optimum growth temperature is 48 ℃, and the optimum initial pH is 1.9. The strain can grow autotrophically by using ferrous iron or elemental sulfur as sole energy sources. The strain is also able to grow heterotrophically by using peptone and yeast extract powder, but not glucose. The cell density of strain ZW-1 can reach up to 1.02×108 /mL with addition of 0.4 g/L peptone. A phylogenetic tree was constructed by comparing with the published 16S rRNA sequences of the relative bacteria species. In the phylogenetic tree, strain ZW-1 is closely relative to Sulfobacilus acidophilus with more than 99% sequence similarity. The results of bioleaching experiments indicate that the strain could oxidize Fe2+ efficiently, and the maximum oxidizing rate is 0.295 g/(L·h). It could tolerate high concentration of Fe3+ and Cu2+ (35 g/L and 25 g/L, respectively). After 20 d, 44.6% of copper is extracted from chalcopyrite by using strain ZW-1 as inocula.

  8. Isolation and characterization of facultative mixotrophic ammonia-oxidizing bacteria from constructed wetlands

    Institute of Scientific and Technical Information of China (English)

    Soulwène Kouki; Neila Saidi; Fadhel M'hiri; Houda Nasr; Hanène Cherif; Hadda Ouzari; Abdermaceur Hassen

    2011-01-01

    Autotrophic ammonia-oxidizing bacteria (AOB) have been widely studied in constructed wetlands systems,while mixotrophic AOB have been less thoroughly examined.Heterotrophic bacteria were isolated from wastewater and rhizospheres of macrophytes of constructed wetlands,and then cultivated in a mixotrophic medium containing ammonium and acetic acid.A molecular characterization was accomplished using ITS-PCR amplification,and phylogenetic analysis based on 16S rRNA gene sequences.Results showed the presence of 35 bacteria,among 400 initially heterotrophic isolates,that were able to remove ammonia.These 35 isolates were classified into 10 genetically different groups based on ITS pattern.Then,a collection of 10 isolates were selected because of their relatively high ammonia removal efficiencies (ARE ≥ 80%) and their phylogenetic diversity.In conditions of mixotrophy,these strains were shown to be able to grow (increase of optical density OD660 during incubation with assimilation of nitrogen into cellular biomass) and to oxidize ammonia (important ammonia oxidation efficiencies,AOE between 79% and 87%).Among these facultative mixotrophic AOB,four isolates were genetically related to Firmicutes (Bacillus and Exiguobacterium),three isolates were affiliated to Actinobacteria (Arthrobacter) and three other isolates were associated with Proteobacteria (Pseudomonas,Ochrobactrum and Bordetella).

  9. Microbial Ecology Assessment of Mixed Copper Oxide/Sulfide Dump Leach Operation

    Energy Technology Data Exchange (ETDEWEB)

    Bruhn, D F; Thompson, D N; Noah, K S

    1999-06-01

    Microbial consortia composed of complex mixtures of autotrophic and heterotrophic bacteria are responsible for the dissolution of metals from sulfide minerals. Thus, an efficient copper bioleaching operation depends on the microbial ecology of the system. A microbial ecology study of a mixed oxide/sulfide copper leaching operation was conducted using an "overlay" plating technique to differentiate and identify various bacterial consortium members of the genera Thiobacillus, Leptospirillum, Ferromicrobium, and Acidiphilium. Two temperatures (30C and 45C) were used to select for mesophilic and moderately thermophilic bacteria. Cell numbers varied from 0-106 cells/g dry ore, depending on the sample location and depth. After acid curing for oxide leaching, no viable bacteria were recovered, although inoculation of cells from raffinate re-established a microbial population after three months. Due to the low pH of the operation, very few non-iron-oxidizing acidophilic heterotrophs were recovered. Moderate thermophiles were isolated from the ore samples. Pregnant liquor solutions (PLS) and raffinate both contained a diversity of bacteria. In addition, an intermittently applied waste stream that contained high levels of arsenic and fluoride was tested for toxicity. Twenty vol% waste stream in PLS killed 100% of the cells in 48 hours, indicating substantial toxicity and/or growth inhibition. The data indicate that bacteria populations can recover after acid curing, and that application of the waste stream to the dump should be avoided. Monitoring the microbial ecology of the leaching operation provided significant information that improved copper recovery.

  10. Synthesis, investigation and spectroscopic characterization of piroxicam ternary complexes of Fe(II), Fe(III), Co(II), Ni(II), Cu(II) and Zn(II) with glycine and DL-phenylalanine

    Science.gov (United States)

    Mohamed, Gehad G.; El-Gamel, Nadia E. A.

    2004-11-01

    The ternary piroxicam (Pir; 4-hydroxy-2-methyl- N-(2-pyridyl)-2H-1,2-benzothiazine-3-carboxamide 1,1-dioxide) complexes of Fe(II), Fe(III), Co(II), Ni(II), Cu(II) and Zn(II) with various amino acids (AA) such as glycine (Gly) or DL-phenylalanine (PhA) were prepared and characterized by elemental analyses, molar conductance, IR, UV-Vis, magnetic moment, diffuse reflectance and X-ray powder diffraction. The UV-Vis spectra of Pir and the effect of metal chelation on the different interligand transitions are discussed in detailed manner. IR and UV-Vis spectra confirm that Pir behaves as a neutral bidentate ligand coordinated to the metal ions via the pyridine- N and carbonyl group of the amide moiety. Gly molecule acted as a uninegatively monodentate ligand and coordinate to the metal ions through its carboxylic group, in addition PhA acted as a uninegatively bidentate ligand and coordinate to the metal ions through its carboxylic and amino groups. All the chelates have octahedral geometrical structures while Cu(II)- and Zn(II)-ternary chelates with PhA have square planar geometrical structures. The molar conductance data reveal that most of these chelates are non electrolytes, while Fe(III)-Pir-Gly, Co(II)-, Ni(II)-, Cu(II)- and Zn(II)-Pir-PhA cheletes were 1:1 electrolytes. X-ray powder diffraction is used as a new tool to estimate the crystallinity of chelates as well as to elucidate their geometrical structures.

  11. INFLUENŢA SELENITULUI DE Fe(III ŞI A INTENSITĂŢII DE ILUMINARE ASUPRA CONŢINUTULUI DE FICOBILIPROTEINE, SELENIU ŞI FIER ÎN BIOMASA CIANOBACTERIEI SPIRULINA PLATENSIS

    Directory of Open Access Journals (Sweden)

    Valentina BULIMAGA

    2017-03-01

    Full Text Available Productivitatea spirulinei şi onţinutul de fier în biomasă au înregistrat valori mai înalte la iluminare mai intensă (5500 lx, comparativ cu 3500 lx, iar acumularea ficobiliproteinelor în biomasa de spirulină a fost mai semnificativă la 3500 lx. Conţinutul de seleniu acumulat în fracţia de ficobiliproteine a înregistrat valori mai sporite cu majorarea concentraţiei selenitului de fier, fiind maxime la concentraţia acestuia de 45 mg/l la ambele intensităţi de iluminare. La 3500 lx conţinutul de seleniu în extractul sumar de ficobiliproteine a fost de 1,4-1,5 ori mai majorat, comparativ cu cel atestat la 5500 lx.EFFECTS OF Fe(III SELENITE AND LIGHT INTENSITY ON THE ACCUMULATION OF PHYCOBILIPROTEINS, SELENIUM AND IRON IN BIOMASS OF CYANOBACTERIUM SPIRULINA PLATENSISSpirulina productivity and iron content in biomass recorded higher values at light intensity 5500 lx, compared to 3500 lx, but phycobiliproteins accumulation in spirulina biomass was more significant at 3500 lx. The content of the accumulated selenium in the phycobiliproteins registered the increased values with the increasing of selenite concentra­tion, attesting its maximum value at 45 mg/l, at the both light intensity. Selenium content in the phycobiliproteins at 3500 lx was by 1.4-1.5 times higher, compared to that registered at 5500 lx.

  12. Simultaneous removal of methylene blue and copper(II) ions by photoelectron catalytic oxidation using stannic oxide modified iron(III) oxide composite electrodes

    Energy Technology Data Exchange (ETDEWEB)

    Qi, Jinqiu [College of Water Conservancy and Civil Engineering, Shandong Agricultural University, Tai' an, Shandong 271018 (China); Li, Xiaochen, E-mail: lixiaochen02@163.com [College of Water Conservancy and Civil Engineering, Shandong Agricultural University, Tai' an, Shandong 271018 (China); Zheng, Hao [College of Water Conservancy and Civil Engineering, Shandong Agricultural University, Tai' an, Shandong 271018 (China); Li, Peiqiang; Wang, Huying [College of Chemistry and Material Science, Shandong Agricultural University, Tai' an, Shandong 271018 (China)

    2015-08-15

    Highlights: • Photoelectron catalytic oxidation was used for methylene blue and Cu{sup 2+} removal. • SnO{sub 2}/Fe{sub 2}O{sub 3} was prepared and characterized for use as photoanodes and photocathodes. • Optimal reaction conditions were determined for methylene blue and Cu{sup 2+} removal. • Methylene blue removal followed the Langmuir–Freundlich–Hinshelwood kinetic model. • Cu{sup 2+} removal followed the first-order rate model. - Abstract: Stannic oxide modified Fe(III) oxide composite electrodes (SnO{sub 2}/Fe{sub 2}O{sub 3}) were synthesized for simultaneously removing methylene blue (MB) and Cu(II) from wastewater using photoelectron catalytic oxidation (PEO). The SnO{sub 2}/Fe{sub 2}O{sub 3} electrodes were characterized using scanning electron microscopy (SEM), X-ray diffraction (XRD), and photoelectrochemical techniques. The removal of MB and Cu(II) by PEO using the SnO{sub 2}/Fe{sub 2}O{sub 3} composite electrodes was studied in terms of reaction time, electric current density, and pH of the electrolyte. The kinetics of the reactions were investigated using batch assays. The optimal reaction time, pH, and electric current density of the PEO process were determined to be 30 min, 6.0, and 10 mA/cm{sup 2}, respectively. The removal rates of MB from wastewater treated by PEO and electron catalytic oxidation process were 84.87% and 70.64%, respectively, while the recovery rates of Cu(II) were 91.75% and 96.78%, respectively. The results suggest that PEO is an effective method for the simultaneous removal of MB and Cu(II) from wastewater, and the PEO process exhibits a much higher removal rate for MB and Cu(II) compared to the electron catalytic oxidation process. Furthermore, the removal of MB was found to follow the Langmuir–Freundlich–Hinshelwood kinetic model, whereas the removal of Cu(II) fitted well to the first-