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Sample records for automatic image segmentation

  1. Automatic segmentation of diatom images for classification

    NARCIS (Netherlands)

    Jalba, Andrei C.; Wilkinson, Michael H.F.; Roerdink, Jos B.T.M.

    2004-01-01

    A general framework for automatic segmentation of diatom images is presented. This segmentation is a critical first step in contour-based methods for automatic identification of diatoms by computerized image analysis. We review existing results, adapt popular segmentation methods to this difficult p

  2. Automatic image segmentation by dynamic region merging.

    Science.gov (United States)

    Peng, Bo; Zhang, Lei; Zhang, David

    2011-12-01

    This paper addresses the automatic image segmentation problem in a region merging style. With an initially oversegmented image, in which many regions (or superpixels) with homogeneous color are detected, an image segmentation is performed by iteratively merging the regions according to a statistical test. There are two essential issues in a region-merging algorithm: order of merging and the stopping criterion. In the proposed algorithm, these two issues are solved by a novel predicate, which is defined by the sequential probability ratio test and the minimal cost criterion. Starting from an oversegmented image, neighboring regions are progressively merged if there is an evidence for merging according to this predicate. We show that the merging order follows the principle of dynamic programming. This formulates the image segmentation as an inference problem, where the final segmentation is established based on the observed image. We also prove that the produced segmentation satisfies certain global properties. In addition, a faster algorithm is developed to accelerate the region-merging process, which maintains a nearest neighbor graph in each iteration. Experiments on real natural images are conducted to demonstrate the performance of the proposed dynamic region-merging algorithm. PMID:21609885

  3. Automatic segmentation of bladder in CT images

    Institute of Scientific and Technical Information of China (English)

    Feng SHI; Jie YANG; Yue-min ZHU

    2009-01-01

    Segmentation of the bladder in computerized tomography (CT) images is an important step in radiation therapy planning of prostate cancer. We present a new segmentation scheme to automatically delineate the bladder contour in CT images with three major steps. First, we use the mean shift algorithm to obtain a clustered image containing the rough contour of the bladder, which is then extracted in the second step by applying a region-growing algorithm with the initial seed point selected from a line-by-line scanning process. The third step is to refine the bladder contour more accurately using the rolling-ball algorithm. These steps are then extended to segment the bladder volume in a slice-by-slice manner. The obtained results were compared to manual segmentation by radiation oncologists. The average values of sensitivity, specificity, positive predictive value, negative predictive value, and Hausdorff distance are 86.5%, 96.3%, 90.5%, 96.5%, and 2.8 pixels, respectively. The results show that the bladder can be accurately segmented.

  4. Automatic segmentation of mammogram and tomosynthesis images

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    Sargent, Dusty; Park, Sun Young

    2016-03-01

    Breast cancer is a one of the most common forms of cancer in terms of new cases and deaths both in the United States and worldwide. However, the survival rate with breast cancer is high if it is detected and treated before it spreads to other parts of the body. The most common screening methods for breast cancer are mammography and digital tomosynthesis, which involve acquiring X-ray images of the breasts that are interpreted by radiologists. The work described in this paper is aimed at optimizing the presentation of mammography and tomosynthesis images to the radiologist, thereby improving the early detection rate of breast cancer and the resulting patient outcomes. Breast cancer tissue has greater density than normal breast tissue, and appears as dense white image regions that are asymmetrical between the breasts. These irregularities are easily seen if the breast images are aligned and viewed side-by-side. However, since the breasts are imaged separately during mammography, the images may be poorly centered and aligned relative to each other, and may not properly focus on the tissue area. Similarly, although a full three dimensional reconstruction can be created from digital tomosynthesis images, the same centering and alignment issues can occur for digital tomosynthesis. Thus, a preprocessing algorithm that aligns the breasts for easy side-by-side comparison has the potential to greatly increase the speed and accuracy of mammogram reading. Likewise, the same preprocessing can improve the results of automatic tissue classification algorithms for mammography. In this paper, we present an automated segmentation algorithm for mammogram and tomosynthesis images that aims to improve the speed and accuracy of breast cancer screening by mitigating the above mentioned problems. Our algorithm uses information in the DICOM header to facilitate preprocessing, and incorporates anatomical region segmentation and contour analysis, along with a hidden Markov model (HMM) for

  5. Automatic segmentation of anterior segment optical coherence tomography images

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    Williams, Dominic; Zheng, Yalin; Bao, Fangjun; Elsheikh, Ahmed

    2013-05-01

    Optical coherence tomography (OCT) images can provide quantitative measurements of the eye's entire anterior segment. A new technique founded on a newly proposed level set-based shape prior segmentation model has been developed for automatic segmentation of the cornea's anterior and posterior boundaries. This technique comprises three major steps: removal of regions containing irrelevant structures and artifacts, estimation of the cornea's location using a thresholding technique, and application of the new level set-based shape prior segmentation model to improve segmentation. The performance of our technique is compared to previously developed methods for analysis of the cornea in 33 OCT images of normal eyes, whereby manual annotations are used as a reference standard. The new technique achieves much improved concordance than previous methods, with a mean Dice's similarity coefficient of >0.92. This demonstrates the technique's potential to provide accurate and reliable measurements of the anterior segment geometry, which is important for many applications, including the construction of representative numerical simulations of the eye's mechanical behavior.

  6. AUTOMATIC MULTILEVEL IMAGE SEGMENTATION BASED ON FUZZY REASONING

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    Liang Tang

    2011-05-01

    Full Text Available An automatic multilevel image segmentation method based on sup-star fuzzy reasoning (SSFR is presented. Using the well-known sup-star fuzzy reasoning technique, the proposed algorithm combines the global statistical information implied in the histogram with the local information represented by the fuzzy sets of gray-levels, and aggregates all the gray-levels into several classes characterized by the local maximum values of the histogram. The presented method has the merits of determining the number of the segmentation classes automatically, and avoiding to calculating thresholds of segmentation. Emulating and real image segmentation experiments demonstrate that the SSFR is effective.

  7. Automatic scale selection for medical image segmentation

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    Bayram, Ersin; Wyatt, Christopher L.; Ge, Yaorong

    2001-07-01

    The scale of interesting structures in medical images is space variant because of partial volume effects, spatial dependence of resolution in many imaging modalities, and differences in tissue properties. Existing segmentation methods either apply a single scale to the entire image or try fine-to-coarse/coarse-to-fine tracking of structures over multiple scales. While single scale approaches fail to fully recover the perceptually important structures, multi-scale methods have problems in providing reliable means to select proper scales and integrating information over multiple scales. A recent approach proposed by Elder and Zucker addresses the scale selection problem by computing a minimal reliable scale for each image pixel. The basic premise of this approach is that, while the scale of structures within an image vary spatially, the imaging system is fixed. Hence, sensor noise statistics can be calculated. Based on a model of edges to be detected, and operators to be used for detection, one can locally compute a unique minimal reliable scale at which the likelihood of error due to sensor noise is less than or equal to a predetermined threshold. In this paper, we improve the segmentation method based on the minimal reliable scale selection and evaluate its effectiveness with both simulated and actual medical data.

  8. FULLY AUTOMATIC FRAMEWORK FOR SEGMENTATION OF BRAIN MRI IMAGE

    Institute of Scientific and Technical Information of China (English)

    Lin Pan; Zheng Chongxun; Yang Yong; Gu Jianwen

    2005-01-01

    Objective To propose an automatic framework for segmentation of brain image in this paper. Methods The brain MRI image segmentation framework consists of three-step segmentation procedures. First, Non-brain structures removal by level set method. Then, the non-uniformity correction method is based on computing estimates of tissue intensity variation. Finally, it uses a statistical model based on Markov random filed for MRI brain image segmentation. The brain tissue can be classified into cerebrospinal fluid, white matter and gray matter. Results To evaluate the proposed our method, we performed two sets of experiments, one on simulated MR and another on real MR brain data. Conclusion The efficacy of the brain MRI image segmentation framework has been demonstrated by the extensive experiments. In the future, we are also planning on a large-scale clinical evaluation of this segmentation framework.

  9. Automatic Segmentation of Dermoscopic Images by Iterative Classification

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    Maciel Zortea

    2011-01-01

    Full Text Available Accurate detection of the borders of skin lesions is a vital first step for computer aided diagnostic systems. This paper presents a novel automatic approach to segmentation of skin lesions that is particularly suitable for analysis of dermoscopic images. Assumptions about the image acquisition, in particular, the approximate location and color, are used to derive an automatic rule to select small seed regions, likely to correspond to samples of skin and the lesion of interest. The seed regions are used as initial training samples, and the lesion segmentation problem is treated as binary classification problem. An iterative hybrid classification strategy, based on a weighted combination of estimated posteriors of a linear and quadratic classifier, is used to update both the automatically selected training samples and the segmentation, increasing reliability and final accuracy, especially for those challenging images, where the contrast between the background skin and lesion is low.

  10. Automatic Image Segmentation based on MRF-MAP

    CERN Document Server

    Qiyang, Zhao

    2012-01-01

    Solving the Maximum a Posteriori on Markov Random Field, MRF-MAP, is a prevailing method in recent interactive image segmentation tools. Although mathematically explicit in its computational targets, and impressive for the segmentation quality, MRF-MAP is hard to accomplish without the interactive information from users. So it is rarely adopted in the automatic style up to today. In this paper, we present an automatic image segmentation algorithm, NegCut, based on the approximation to MRF-MAP. First we prove MRF-MAP is NP-hard when the probabilistic models are unknown, and then present an approximation function in the form of minimum cuts on graphs with negative weights. Finally, the binary segmentation is taken from the largest eigenvector of the target matrix, with a tuned version of the Lanczos eigensolver. It is shown competitive at the segmentation quality in our experiments.

  11. Adaptive automatic segmentation of Leishmaniasis parasite in Indirect Immunofluorescence images.

    Science.gov (United States)

    Ouertani, F; Amiri, H; Bettaib, J; Yazidi, R; Ben Salah, A

    2014-01-01

    This paper describes the first steps for the automation of the serum titration process. In fact, this process requires an Indirect Immunofluorescence (IIF) diagnosis automation. We deal with the initial phase that represents the fluorescence images segmentation. Our approach consists of three principle stages: (1) a color based segmentation which aims at extracting the fluorescent foreground based on k-means clustering, (2) the segmentation of the fluorescent clustered image, and (3) a region-based feature segmentation, intended to remove the fluorescent noisy regions and to locate fluorescent parasites. We evaluated the proposed method on 40 IIF images. Experimental results show that such a method provides reliable and robust automatic segmentation of fluorescent Promastigote parasite. PMID:25571049

  12. Automatic Image Segmentation Base on Human Color Perceptions

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    Yu Li-jie

    2009-10-01

    Full Text Available In this paper we propose a color image segmentation algorithm based on perceptual color vision model. First, the original image is divide into image blocks which are not overlapped; then, the mean and variance of every image back was calculated in CIEL*a*b* color space, and the image blocks were divided into homogeneous color blocks and texture blocks by the variance of it. The initial seed regions are automatically selected depending on calculating the homogeneous color blocks' color difference in CIEL*a*b* color space and spatial information. The color contrast gradient of the texture blocks need to calculate and the edge information are stored for regional growing. The fuzzy region growing algorithm and coloredge detection to obtain a final segmentation map. The experimental segmentation results hold favorable consistency in terms of human perception, and confirm effectiveness of the algorithm.

  13. Automatic sputum color image segmentation for tuberculosis diagnosis

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    Forero-Vargas, Manuel G.; Sierra-Ballen, Eduard L.; Alvarez-Borrego, Josue; Pech-Pacheco, Jose L.; Cristobal-Perez, Gabriel; Alcala, Luis; Desco, Manuel

    2001-11-01

    Tuberculosis (TB) and other mycobacteriosis are serious illnesses which control is mainly based on presumptive diagnosis. Besides of clinical suspicion, the diagnosis of mycobacteriosis must be done through genus specific smears of clinical specimens. However, these techniques lack of sensitivity and consequently clinicians must wait culture results as much as two months. Computer analysis of digital images from these smears could improve sensitivity of the test and, moreover, decrease workload of the micobacteriologist. Bacteria segmentation of particular species entails a complex process. Bacteria shape is not enough as a discriminant feature, because there are many species that share the same shape. Therefore the segmentation procedure requires to be improved using the color image information. In this paper we present two segmentation procedures based on fuzzy rules and phase-only correlation techniques respectively that will provide the basis of a future automatic particle' screening.

  14. Automatic character detection and segmentation in natural scene images

    Institute of Scientific and Technical Information of China (English)

    ZHU Kai-hua; QI Fei-hu; JIANG Ren-jie; XU Li

    2007-01-01

    We present a robust connected-component (CC) based method for automatic detection and segmentation of text in real-scene images. This technique can be applied in robot vision, sign recognition, meeting processing and video indexing. First, a Non-Linear Niblack method (NLNiblack) is proposed to decompose the image into candidate CCs. Then, all these CCs are fed into a cascade of classifiers trained by Adaboost algorithm. Each classifier in the cascade responds to one feature of the CC. Proposed here are 12 novel features which are insensitive to noise, scale, text orientation and text language. The classifier cascade allows non-text CCs of the image to be rapidly discarded while more computation is spent on promising text-like CCs. The CCs passing through the cascade are considered as text components and are used to form the segmentation result. A prototype system was built,with experimental results proving the effectiveness and efficiency of the proposed method.

  15. Automatic comic page image understanding based on edge segment analysis

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    Liu, Dong; Wang, Yongtao; Tang, Zhi; Li, Luyuan; Gao, Liangcai

    2013-12-01

    Comic page image understanding aims to analyse the layout of the comic page images by detecting the storyboards and identifying the reading order automatically. It is the key technique to produce the digital comic documents suitable for reading on mobile devices. In this paper, we propose a novel comic page image understanding method based on edge segment analysis. First, we propose an efficient edge point chaining method to extract Canny edge segments (i.e., contiguous chains of Canny edge points) from the input comic page image; second, we propose a top-down scheme to detect line segments within each obtained edge segment; third, we develop a novel method to detect the storyboards by selecting the border lines and further identify the reading order of these storyboards. The proposed method is performed on a data set consisting of 2000 comic page images from ten printed comic series. The experimental results demonstrate that the proposed method achieves satisfactory results on different comics and outperforms the existing methods.

  16. Deformable meshes for medical image segmentation accurate automatic segmentation of anatomical structures

    CERN Document Server

    Kainmueller, Dagmar

    2014-01-01

    ? Segmentation of anatomical structures in medical image data is an essential task in clinical practice. Dagmar Kainmueller introduces methods for accurate fully automatic segmentation of anatomical structures in 3D medical image data. The author's core methodological contribution is a novel deformation model that overcomes limitations of state-of-the-art Deformable Surface approaches, hence allowing for accurate segmentation of tip- and ridge-shaped features of anatomical structures. As for practical contributions, she proposes application-specific segmentation pipelines for a range of anatom

  17. Embryonic Heart Morphogenesis from Confocal Microscopy Imaging and Automatic Segmentation

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    Hongda Mao

    2013-01-01

    Full Text Available Embryonic heart morphogenesis (EHM is a complex and dynamic process where the heart transforms from a single tube into a four-chambered pump. This process is of great biological and clinical interest but is still poorly understood for two main reasons. On the one hand, the existing imaging modalities for investigating EHM suffered from either limited penetration depth or limited spatial resolution. On the other hand, current works typically adopted manual segmentation, which was tedious, subjective, and time consuming considering the complexity of developing heart geometry and the large size of images. In this paper, we propose to utilize confocal microscopy imaging with tissue optical immersion clearing technique to image the heart at different stages of development for EHM study. The imaging method is able to produce high spatial resolution images and achieve large penetration depth at the same time. Furthermore, we propose a novel convex active contour model for automatic image segmentation. The model has the ability to deal with intensity fall-off in depth which is characterized by confocal microscopy images. We acquired the images of embryonic quail hearts from day 6 to day 14 of incubation for EHM study. The experimental results were promising and provided us with an insight view of early heart growth pattern and also paved the road for data-driven heart growth modeling.

  18. Automatic segmentation of brain images: selection of region extraction methods

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    Gong, Leiguang; Kulikowski, Casimir A.; Mezrich, Reuben S.

    1991-07-01

    In automatically analyzing brain structures from a MR image, the choice of low level region extraction methods depends on the characteristics of both the target object and the surrounding anatomical structures in the image. The authors have experimented with local thresholding, global thresholding, and other techniques, using various types of MR images for extracting the major brian landmarks and different types of lesions. This paper describes specifically a local- binary thresholding method and a new global-multiple thresholding technique developed for MR image segmentation and analysis. The initial testing results on their segmentation performance are presented, followed by a comparative analysis of the two methods and their ability to extract different types of normal and abnormal brain structures -- the brain matter itself, tumors, regions of edema surrounding lesions, multiple sclerosis lesions, and the ventricles of the brain. The analysis and experimental results show that the global multiple thresholding techniques are more than adequate for extracting regions that correspond to the major brian structures, while local binary thresholding is helpful for more accurate delineation of small lesions such as those produced by MS, and for the precise refinement of lesion boundaries. The detection of other landmarks, such as the interhemispheric fissure, may require other techniques, such as line-fitting. These experiments have led to the formulation of a set of generic computer-based rules for selecting the appropriate segmentation packages for particular types of problems, based on which further development of an innovative knowledge- based, goal directed biomedical image analysis framework is being made. The system will carry out the selection automatically for a given specific analysis task.

  19. Automatic ultrasound image enhancement for 2D semi-automatic breast-lesion segmentation

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    Lu, Kongkuo; Hall, Christopher S.

    2014-03-01

    Breast cancer is the fastest growing cancer, accounting for 29%, of new cases in 2012, and second leading cause of cancer death among women in the United States and worldwide. Ultrasound (US) has been used as an indispensable tool for breast cancer detection/diagnosis and treatment. In computer-aided assistance, lesion segmentation is a preliminary but vital step, but the task is quite challenging in US images, due to imaging artifacts that complicate detection and measurement of the suspect lesions. The lesions usually present with poor boundary features and vary significantly in size, shape, and intensity distribution between cases. Automatic methods are highly application dependent while manual tracing methods are extremely time consuming and have a great deal of intra- and inter- observer variability. Semi-automatic approaches are designed to counterbalance the advantage and drawbacks of the automatic and manual methods. However, considerable user interaction might be necessary to ensure reasonable segmentation for a wide range of lesions. This work proposes an automatic enhancement approach to improve the boundary searching ability of the live wire method to reduce necessary user interaction while keeping the segmentation performance. Based on the results of segmentation of 50 2D breast lesions in US images, less user interaction is required to achieve desired accuracy, i.e. < 80%, when auto-enhancement is applied for live-wire segmentation.

  20. Automatic segmentation of HeLa cell images

    CERN Document Server

    Urban, Jan

    2011-01-01

    In this work, the possibilities for segmentation of cells from their background and each other in digital image were tested, combined and improoved. Lot of images with young, adult and mixture cells were able to prove the quality of described algorithms. Proper segmentation is one of the main task of image analysis and steps order differ from work to work, depending on input images. Reply for biologicaly given question was looking for in this work, including filtration, details emphasizing, segmentation and sphericity computing. Order of algorithms and way to searching for them was also described. Some questions and ideas for further work were mentioned in the conclusion part.

  1. Automatic Scheme for Fused Medical Image Segmentation with Nonsubsampled Contourlet Transform

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    Ch.Hima Bindu

    2012-10-01

    Full Text Available Medical image segmentation has become an essential technique in clinical and research- oriented applications. Because manual segmentation methods are tedious, and semi-automatic segmentation lacks the flexibility, fully-automatic methods have become the preferred type of medical image segmentation. This work proposes a robust fully automatic segmentation scheme based on the modified contouring technique. The entire scheme consists of three stages. In the first stage, the Nonsubsampled Contourlet Transform (NSCT of image is computed. This is followed by the fusion of coefficients using fusion method. For that fused image local threshold is computed. This is followed by the second stage in which the initial points are determined by computation of global threshold. Finally, in the third stage, searching procedure is started from each initial point to obtain closed-loop contours. The whole process is fully automatic. This avoids the disadvantages of semi-automatic schemes such as manually selecting the initial contours and points.

  2. Automatic organ segmentation on torso CT images by using content-based image retrieval

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    Zhou, Xiangrong; Watanabe, Atsuto; Zhou, Xinxin; Hara, Takeshi; Yokoyama, Ryujiro; Kanematsu, Masayuki; Fujita, Hiroshi

    2012-02-01

    This paper presents a fast and robust segmentation scheme that automatically identifies and extracts a massive-organ region on torso CT images. In contrast to the conventional algorithms that are designed empirically for segmenting a specific organ based on traditional image processing techniques, the proposed scheme uses a fully data-driven approach to accomplish a universal solution for segmenting the different massive-organ regions on CT images. Our scheme includes three processing steps: machine-learning-based organ localization, content-based image (reference) retrieval, and atlas-based organ segmentation techniques. We applied this scheme to automatic segmentations of heart, liver, spleen, left and right kidney regions on non-contrast CT images respectively, which are still difficult tasks for traditional segmentation algorithms. The segmentation results of these organs are compared with the ground truth that manually identified by a medical expert. The Jaccard similarity coefficient between the ground truth and automated segmentation result centered on 67% for heart, 81% for liver, 78% for spleen, 75% for left kidney, and 77% for right kidney. The usefulness of our proposed scheme was confirmed.

  3. Automatic labeling and segmentation of vertebrae in CT images

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    Rasoulian, Abtin; Rohling, Robert N.; Abolmaesumi, Purang

    2014-03-01

    Labeling and segmentation of the spinal column from CT images is a pre-processing step for a range of image- guided interventions. State-of-the art techniques have focused either on image feature extraction or template matching for labeling of the vertebrae followed by segmentation of each vertebra. Recently, statistical multi- object models have been introduced to extract common statistical characteristics among several anatomies. In particular, we have created models for segmentation of the lumbar spine which are robust, accurate, and computationally tractable. In this paper, we reconstruct a statistical multi-vertebrae pose+shape model and utilize it in a novel framework for labeling and segmentation of the vertebra in a CT image. We validate our technique in terms of accuracy of the labeling and segmentation of CT images acquired from 56 subjects. The method correctly labels all vertebrae in 70% of patients and is only one level off for the remaining 30%. The mean distance error achieved for the segmentation is 2.1 +/- 0.7 mm.

  4. Automatic segmentation of heart cavities in multidimensional ultrasound images

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    Wolf, Ivo; Glombitza, Gerald; De Simone, Rosalyn; Meinzer, Hans-Peter

    2000-06-01

    We propose a segmentation method different from active contours, which can cope with incomplete edges. The algorithm has been developed to segment heart cavities, but may be extended to more complex object shapes. Due to the almost convex geometry of heart cavities we are using a polar coordinate system with its origin near the cavity's center. The image is scanned from the origin for potential edge points. In order to assess the likelihood of an edge point to belong to the myocardial wall, region based information, such as visibility and local wall thickness, is included. The local information (edge points) progressively is expanded by first grouping the edge points to line segments and then selecting a subgroup of segments to obtain the final closed contour. This is done by means of minimizing a cost function. The plausibility of the result is checked and, if needed, the contour is corrected and/or refined by searching for additional potential edge points. For multidimensional images the algorithm is applied slice-by-slice without the need of further user interaction. The new segmentation method has been applied to clinical ultrasound images, the result being that the myocardial wall correctly was detected in the vast majority of cases.

  5. Automatic segmentation of cerebral MR images using artificial neural networks

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    Alirezaie, J.; Jernigan, M.E. [Univ. of Waterloo, Ontario (Canada); Nahmias, C. [McMaster Univ., Hamilton, Ontario (Canada)

    1996-12-31

    In this paper we present an unsupervised clustering technique for multispectral segmentation of magnetic resonance (MR) images of the human brain. Our scheme utilizes the Self Organizing Feature Map (SOFM) artificial neural network for feature mapping and generates a set of codebook vectors. By extending the network with an additional layer the map will be classified and each tissue class will be labelled. An algorithm has been developed for extracting the cerebrum from the head scan prior to the segmentation. Extracting the cerebrum is performed by stripping away the skull pixels from the T2 image. Three tissue types of the brain: white matter, gray matter and cerebral spinal fluid (CSF) are segmented accurately. To compare the results with other conventional approaches we applied the c-means algorithm to the problem.

  6. Automatic tissue segmentation of breast biopsies imaged by QPI

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    Majeed, Hassaan; Nguyen, Tan; Kandel, Mikhail; Marcias, Virgilia; Do, Minh; Tangella, Krishnarao; Balla, Andre; Popescu, Gabriel

    2016-03-01

    The current tissue evaluation method for breast cancer would greatly benefit from higher throughput and less inter-observer variation. Since quantitative phase imaging (QPI) measures physical parameters of tissue, it can be used to find quantitative markers, eliminating observer subjectivity. Furthermore, since the pixel values in QPI remain the same regardless of the instrument used, classifiers can be built to segment various tissue components without need for color calibration. In this work we use a texton-based approach to segment QPI images of breast tissue into various tissue components (epithelium, stroma or lumen). A tissue microarray comprising of 900 unstained cores from 400 different patients was imaged using Spatial Light Interference Microscopy. The training data were generated by manually segmenting the images for 36 cores and labelling each pixel (epithelium, stroma or lumen.). For each pixel in the data, a response vector was generated by the Leung-Malik (LM) filter bank and these responses were clustered using the k-means algorithm to find the centers (called textons). A random forest classifier was then trained to find the relationship between a pixel's label and the histogram of these textons in that pixel's neighborhood. The segmentation was carried out on the validation set by calculating the texton histogram in a pixel's neighborhood and generating a label based on the model learnt during training. Segmentation of the tissue into various components is an important step toward efficiently computing parameters that are markers of disease. Automated segmentation, followed by diagnosis, can improve the accuracy and speed of analysis leading to better health outcomes.

  7. Unsupervised segmentation of cardiac PET transmission images for automatic heart volume extraction.

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    Juslin, Anu; Tohka, Jussi

    2006-01-01

    In this study, we propose an automatic method to extract the heart volume from the cardiac positron emission tomography (PET) transmission images. The method combines the automatic 3D segmentation of the transmission image using Markov random fields (MRFs) to surface extraction using deformable models. Deformable models were automatically initialized using the MRFs segmentation result. The extraction of the heart region is needed e.g. in independent component analysis (ICA). The volume of the heart can be used to mask the emission image corresponding to the transmission image, so that only the cardiac region is used for the analysis. The masking restricts the number of independent components and reduces the computation time. In addition, the MRF segmentation result could be used for attenuation correction. The method was tested with 25 patient images. The MRF segmentation results were of good quality in all cases and we were able to extract the heart volume from all the images. PMID:17946020

  8. Automatic segmentation of relevant textures in agricultural images

    OpenAIRE

    Guijarro, Maria; Pajares, Gonzalo; Riomoros, I.; Herrera, P.J.; Burgos Artizzu, Xavier; Ribeiro Seijas, Angela

    2011-01-01

    One important issue emerging strongly in agriculture is related with the automatization of tasks, where the optical sensors play an important role. They provide images that must be conveniently processed. The most relevantimage processing procedures require the identification of green plants, in our experiments they come from barley and corn crops including weeds, so that some types of action can be carried out, including site-specific treatments with chemical products or mechanical manipulat...

  9. Fully automatic segmentation of complex organ systems: example of trachea, esophagus and heart segmentation in CT images

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    Meyer, Carsten; Peters, Jochen; Weese, Jürgen

    2011-03-01

    Automatic segmentation is a prerequisite to efficiently analyze the large amount of image data produced by modern imaging modalities. Many algorithms exist to segment individual organs or organ systems. However, new clinical applications and the progress in imaging technology will require the segmentation of more and more complex organ systems composed of a number of substructures, e.g., the heart, the trachea, and the esophagus. The goal of this work is to demonstrate that such complex organ systems can be successfully segmented by integrating the individual organs into a general model-based segmentation framework, without tailoring the core adaptation engine to the individual organs. As an example, we address the fully automatic segmentation of the trachea (around its main bifurcation, including the proximal part of the two main bronchi) and the esophagus in addition to the heart with all chambers and attached major vessels. To this end, we integrate the trachea and the esophagus into a model-based cardiac segmentation framework. Specifically, in a first parametric adaptation step of the segmentation workflow, the trachea and the esophagus share global model transformations with adjacent heart structures. This allows to obtain a robust, approximate segmentation for the trachea even if it is only partly inside the field-of-view, and for the esophagus in spite of limited contrast. The segmentation is then refined in a subsequent deformable adaptation step. We obtained a mean segmentation error of about 0.6mm for the trachea and 2.3mm for the esophagus on a database of 23 volumetric cardiovascular CT images. Furthermore, we show by quantitative evaluation that our integrated framework outperforms individual esophagus segmentation, and individual trachea segmentation if the trachea is only partly inside the field-of-view.

  10. Automatic segmentation of seeds and fluoroscope tracking (FTRAC) fiducial in prostate brachytherapy x-ray images

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    Kuo, Nathanael; Lee, Junghoon; Deguet, Anton; Song, Danny; Burdette, E. Clif; Prince, Jerry

    2010-02-01

    C-arm X-ray fluoroscopy-based radioactive seed localization for intraoperative dosimetry of prostate brachytherapy is an active area of research. The fluoroscopy tracking (FTRAC) fiducial is an image-based tracking device composed of radio-opaque BBs, lines, and ellipses that provides an effective means for pose estimation so that three-dimensional reconstruction of the implanted seeds from multiple X-ray images can be related to the ultrasound-computed prostate volume. Both the FTRAC features and the brachytherapy seeds must be segmented quickly and accurately during the surgery, but current segmentation algorithms are inhibitory in the operating room (OR). The first reason is that current algorithms require operators to manually select a region of interest (ROI), preventing automatic pipelining from image acquisition to seed reconstruction. Secondly, these algorithms fail often, requiring operators to manually correct the errors. We propose a fast and effective ROI-free automatic FTRAC and seed segmentation algorithm to minimize such human intervention. The proposed algorithm exploits recent image processing tools to make seed reconstruction as easy and convenient as possible. Preliminary results on 162 patient images show this algorithm to be fast, effective, and accurate for all features to be segmented. With near perfect success rates and subpixel differences to manual segmentation, our automatic FTRAC and seed segmentation algorithm shows promising results to save crucial time in the OR while reducing errors.

  11. Automatic co-segmentation of lung tumor based on random forest in PET-CT images

    Science.gov (United States)

    Jiang, Xueqing; Xiang, Dehui; Zhang, Bin; Zhu, Weifang; Shi, Fei; Chen, Xinjian

    2016-03-01

    In this paper, a fully automatic method is proposed to segment the lung tumor in clinical 3D PET-CT images. The proposed method effectively combines PET and CT information to make full use of the high contrast of PET images and superior spatial resolution of CT images. Our approach consists of three main parts: (1) initial segmentation, in which spines are removed in CT images and initial connected regions achieved by thresholding based segmentation in PET images; (2) coarse segmentation, in which monotonic downhill function is applied to rule out structures which have similar standardized uptake values (SUV) to the lung tumor but do not satisfy a monotonic property in PET images; (3) fine segmentation, random forests method is applied to accurately segment the lung tumor by extracting effective features from PET and CT images simultaneously. We validated our algorithm on a dataset which consists of 24 3D PET-CT images from different patients with non-small cell lung cancer (NSCLC). The average TPVF, FPVF and accuracy rate (ACC) were 83.65%, 0.05% and 99.93%, respectively. The correlation analysis shows our segmented lung tumor volumes has strong correlation ( average 0.985) with the ground truth 1 and ground truth 2 labeled by a clinical expert.

  12. Geometric characterization of a circumferential seam by automatic segmentation of digitized radioscopic images

    International Nuclear Information System (INIS)

    The present study deals with the nondestructive control of a circumferential seam by digital radioscopy. A series of images for one complete revolution of the welded component is available. We first resort to a joint approach by simulation and experimentation. This approach allows the detection of the molten zone limits for an initial image. We then develop a segmentation method that permits automatic extraction of the geometric characteristics of the set of images representative of the weld. These measures supply fast and automatic control of the weld quality. Results are shown for real components. (author)

  13. A comparative study of automatic image segmentation algorithms for target tracking in MR-IGRT.

    Science.gov (United States)

    Feng, Yuan; Kawrakow, Iwan; Olsen, Jeff; Parikh, Parag J; Noel, Camille; Wooten, Omar; Du, Dongsu; Mutic, Sasa; Hu, Yanle

    2016-01-01

    On-board magnetic resonance (MR) image guidance during radiation therapy offers the potential for more accurate treatment delivery. To utilize the real-time image information, a crucial prerequisite is the ability to successfully segment and track regions of interest (ROI). The purpose of this work is to evaluate the performance of different segmentation algorithms using motion images (4 frames per second) acquired using a MR image-guided radiotherapy (MR-IGRT) system. Manual con-tours of the kidney, bladder, duodenum, and a liver tumor by an experienced radia-tion oncologist were used as the ground truth for performance evaluation. Besides the manual segmentation, images were automatically segmented using thresholding, fuzzy k-means (FKM), k-harmonic means (KHM), and reaction-diffusion level set evolution (RD-LSE) algorithms, as well as the tissue tracking algorithm provided by the ViewRay treatment planning and delivery system (VR-TPDS). The performance of the five algorithms was evaluated quantitatively by comparing with the manual segmentation using the Dice coefficient and target registration error (TRE) measured as the distance between the centroid of the manual ROI and the centroid of the automatically segmented ROI. All methods were able to successfully segment the bladder and the kidney, but only FKM, KHM, and VR-TPDS were able to segment the liver tumor and the duodenum. The performance of the thresholding, FKM, KHM, and RD-LSE algorithms degraded as the local image contrast decreased, whereas the performance of the VP-TPDS method was nearly independent of local image contrast due to the reference registration algorithm. For segmenting high-contrast images (i.e., kidney), the thresholding method provided the best speed (< 1 ms) with a satisfying accuracy (Dice = 0.95). When the image contrast was low, the VR-TPDS method had the best automatic contour. Results suggest an image quality determination procedure before segmentation and a combination of

  14. Correlation analysis-based image segmentation approach for automatic agriculture vehicle

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    It is important to segment image correctly to extract guidance information for automatic agriculture vehicle. If we can make the computer know where the crops are, we can extract the guidance line easily. Images were divided into some rectangle small windows, then a pair of 1-D arrays was constructed in each small windows. The correlation coefficients of every small window constructed the features to segment images. The results showed that correlation analysis is a potential approach for processing complex farmland for guidance system, and more correlation analysis methods must be researched.

  15. Automatic 2D segmentation of airways in thorax computed tomography images

    International Nuclear Information System (INIS)

    Introduction: much of the world population is affected by pulmonary diseases, such as the bronchial asthma, bronchitis and bronchiectasis. The bronchial diagnosis is based on the airways state. In this sense, the automatic segmentation of the airways in Computed Tomography (CT) scans is a critical step in the aid to diagnosis of these diseases. Methods: this paper evaluates algorithms for airway automatic segmentation, using Neural Network Multilayer Perceptron (MLP) and Lung Densities Analysis (LDA) for detecting airways, along with Region Growing (RG), Active Contour Method (ACM) Balloon and Topology Adaptive to segment them. Results: we obtained results in three stages: comparative analysis of the detection algorithms MLP and LDA, with a gold standard acquired by three physicians with expertise in CT imaging of the chest; comparative analysis of segmentation algorithms ACM Balloon, ACM Topology Adaptive, MLP and RG; and evaluation of possible combinations between segmentation and detection algorithms, resulting in the complete method for automatic segmentation of the airways in 2D. Conclusion: the low incidence of false negative and the significant reduction of false positive, results in similarity coefficient and sensitivity exceeding 91% and 87% respectively, for a combination of algorithms with satisfactory segmentation quality. (author)

  16. 3D automatic liver segmentation using feature-constrained Mahalanobis distance in CT images.

    Science.gov (United States)

    Salman Al-Shaikhli, Saif Dawood; Yang, Michael Ying; Rosenhahn, Bodo

    2016-08-01

    Automatic 3D liver segmentation is a fundamental step in the liver disease diagnosis and surgery planning. This paper presents a novel fully automatic algorithm for 3D liver segmentation in clinical 3D computed tomography (CT) images. Based on image features, we propose a new Mahalanobis distance cost function using an active shape model (ASM). We call our method MD-ASM. Unlike the standard active shape model (ST-ASM), the proposed method introduces a new feature-constrained Mahalanobis distance cost function to measure the distance between the generated shape during the iterative step and the mean shape model. The proposed Mahalanobis distance function is learned from a public database of liver segmentation challenge (MICCAI-SLiver07). As a refinement step, we propose the use of a 3D graph-cut segmentation. Foreground and background labels are automatically selected using texture features of the learned Mahalanobis distance. Quantitatively, the proposed method is evaluated using two clinical 3D CT scan databases (MICCAI-SLiver07 and MIDAS). The evaluation of the MICCAI-SLiver07 database is obtained by the challenge organizers using five different metric scores. The experimental results demonstrate the availability of the proposed method by achieving an accurate liver segmentation compared to the state-of-the-art methods. PMID:26501155

  17. Automatic Lung Tumor Segmentation on PET/CT Images Using Fuzzy Markov Random Field Model

    Directory of Open Access Journals (Sweden)

    Yu Guo

    2014-01-01

    Full Text Available The combination of positron emission tomography (PET and CT images provides complementary functional and anatomical information of human tissues and it has been used for better tumor volume definition of lung cancer. This paper proposed a robust method for automatic lung tumor segmentation on PET/CT images. The new method is based on fuzzy Markov random field (MRF model. The combination of PET and CT image information is achieved by using a proper joint posterior probability distribution of observed features in the fuzzy MRF model which performs better than the commonly used Gaussian joint distribution. In this study, the PET and CT simulation images of 7 non-small cell lung cancer (NSCLC patients were used to evaluate the proposed method. Tumor segmentations with the proposed method and manual method by an experienced radiation oncologist on the fused images were performed, respectively. Segmentation results obtained with the two methods were similar and Dice’s similarity coefficient (DSC was 0.85 ± 0.013. It has been shown that effective and automatic segmentations can be achieved with this method for lung tumors which locate near other organs with similar intensities in PET and CT images, such as when the tumors extend into chest wall or mediastinum.

  18. Semi-automatic breast ultrasound image segmentation based on mean shift and graph cuts.

    Science.gov (United States)

    Zhou, Zhuhuang; Wu, Weiwei; Wu, Shuicai; Tsui, Po-Hsiang; Lin, Chung-Chih; Zhang, Ling; Wang, Tianfu

    2014-10-01

    Computerized tumor segmentation on breast ultrasound (BUS) images remains a challenging task. In this paper, we proposed a new method for semi-automatic tumor segmentation on BUS images using Gaussian filtering, histogram equalization, mean shift, and graph cuts. The only interaction required was to select two diagonal points to determine a region of interest (ROI) on an input image. The ROI image was shrunken by a factor of 2 using bicubic interpolation to reduce computation time. The shrunken image was smoothed by a Gaussian filter and then contrast-enhanced by histogram equalization. Next, the enhanced image was filtered by pyramid mean shift to improve homogeneity. The object and background seeds for graph cuts were automatically generated on the filtered image. Using these seeds, the filtered image was then segmented by graph cuts into a binary image containing the object and background. Finally, the binary image was expanded by a factor of 2 using bicubic interpolation, and the expanded image was processed by morphological opening and closing to refine the tumor contour. The method was implemented with OpenCV 2.4.3 and Visual Studio 2010 and tested for 38 BUS images with benign tumors and 31 BUS images with malignant tumors from different ultrasound scanners. Experimental results showed that our method had a true positive rate (TP) of 91.7%, a false positive (FP) rate of 11.9%, and a similarity (SI) rate of 85.6%. The mean run time on Intel Core 2.66 GHz CPU and 4 GB RAM was 0.49 ± 0.36 s. The experimental results indicate that the proposed method may be useful in BUS image segmentation.

  19. Semi-automatic breast ultrasound image segmentation based on mean shift and graph cuts.

    Science.gov (United States)

    Zhou, Zhuhuang; Wu, Weiwei; Wu, Shuicai; Tsui, Po-Hsiang; Lin, Chung-Chih; Zhang, Ling; Wang, Tianfu

    2014-10-01

    Computerized tumor segmentation on breast ultrasound (BUS) images remains a challenging task. In this paper, we proposed a new method for semi-automatic tumor segmentation on BUS images using Gaussian filtering, histogram equalization, mean shift, and graph cuts. The only interaction required was to select two diagonal points to determine a region of interest (ROI) on an input image. The ROI image was shrunken by a factor of 2 using bicubic interpolation to reduce computation time. The shrunken image was smoothed by a Gaussian filter and then contrast-enhanced by histogram equalization. Next, the enhanced image was filtered by pyramid mean shift to improve homogeneity. The object and background seeds for graph cuts were automatically generated on the filtered image. Using these seeds, the filtered image was then segmented by graph cuts into a binary image containing the object and background. Finally, the binary image was expanded by a factor of 2 using bicubic interpolation, and the expanded image was processed by morphological opening and closing to refine the tumor contour. The method was implemented with OpenCV 2.4.3 and Visual Studio 2010 and tested for 38 BUS images with benign tumors and 31 BUS images with malignant tumors from different ultrasound scanners. Experimental results showed that our method had a true positive rate (TP) of 91.7%, a false positive (FP) rate of 11.9%, and a similarity (SI) rate of 85.6%. The mean run time on Intel Core 2.66 GHz CPU and 4 GB RAM was 0.49 ± 0.36 s. The experimental results indicate that the proposed method may be useful in BUS image segmentation. PMID:24759696

  20. A fully automatic framework for cell segmentation on non-confocal adaptive optics images

    Science.gov (United States)

    Liu, Jianfei; Dubra, Alfredo; Tam, Johnny

    2016-03-01

    By the time most retinal diseases are diagnosed, macroscopic irreversible cellular loss has already occurred. Earlier detection of subtle structural changes at the single photoreceptor level is now possible, using the adaptive optics scanning light ophthalmoscope (AOSLO). This work aims to develop a fully automatic segmentation framework to extract cell boundaries from non-confocal split-detection AOSLO images of the cone photoreceptor mosaic in the living human eye. Significant challenges include anisotropy, heterogeneous cell regions arising from shading effects, and low contrast between cells and background. To overcome these challenges, we propose the use of: 1) multi-scale Hessian response to detect heterogeneous cell regions, 2) convex hulls to create boundary templates, and 3) circularlyconstrained geodesic active contours to refine cell boundaries. We acquired images from three healthy subjects at eccentric retinal regions and manually contoured cells to generate ground-truth for evaluating segmentation accuracy. Dice coefficient, relative absolute area difference, and average contour distance were 82±2%, 11±6%, and 2.0±0.2 pixels (Mean±SD), respectively. We find that strong shading effects from vessels are a main factor that causes cell oversegmentation and false segmentation of non-cell regions. Our segmentation algorithm can automatically and accurately segment photoreceptor cells on non-confocal AOSLO images, which is the first step in longitudinal tracking of cellular changes in the individual eye over the time course of disease progression.

  1. An entropy-based approach to automatic image segmentation of satellite images

    CERN Document Server

    Barbieri, A L; Rodrigues, F A; Bruno, O M; Costa, L da F

    2009-01-01

    An entropy-based image segmentation approach is introduced and applied to color images obtained from Google Earth. Segmentation refers to the process of partitioning a digital image in order to locate different objects and regions of interest. The application to satellite images paves the way to automated monitoring of ecological catastrophes, urban growth, agricultural activity, maritime pollution, climate changing and general surveillance. Regions representing aquatic, rural and urban areas are identified and the accuracy of the proposed segmentation methodology is evaluated. The comparison with gray level images revealed that the color information is fundamental to obtain an accurate segmentation.

  2. An entropy-based approach to automatic image segmentation of satellite images

    Science.gov (United States)

    Barbieri, Andre L.; de Arruda, G. F.; Rodrigues, Francisco A.; Bruno, Odemir M.; Costa, Luciano da Fontoura

    2011-02-01

    An entropy-based image segmentation approach is introduced and applied to color images obtained from Google Earth. Segmentation refers to the process of partitioning a digital image in order to locate different objects and regions of interest. The application to satellite images paves the way to automated monitoring of ecological catastrophes, urban growth, agricultural activity, maritime pollution, climate changing and general surveillance. Regions representing aquatic, rural and urban areas are identified and the accuracy of the proposed segmentation methodology is evaluated. The comparison with gray level images revealed that the color information is fundamental to obtain an accurate segmentation.

  3. Automatic Liver Segmentation from CT Images Using Single-Block Linear Detection.

    Science.gov (United States)

    Huang, Lianfen; Weng, Minghui; Shuai, Haitao; Huang, Yue; Sun, Jianjun; Gao, Fenglian

    2016-01-01

    Automatic liver segmentation not only plays an important role in the analysis of liver disease, but also reduces the cost and humanity's impact in segmentation. In addition, liver segmentation is a very challenging task due to countless anatomical variations and technical difficulties. Many methods have been designed to overcome these challenges, but these methods still need to be improved to obtain the desired segmentation precision. In this paper, a fast algorithm is proposed for liver extraction from CT images with single-block linear detection. The proposed method does not require iteration; thus, the computational time and complexity are decreased enormously. In addition, the initialization is not crucial in the algorithm, so the algorithm's robustness and specificity are improved. The experimental evaluation of the proposed method revealed effective segmentation in normal and abnormal (liver hemangioma and liver cancer) abdominal CT images. The average sensitivity, accuracy, and specificity for liver cancer are 96.59%, 98.65%, and 99.03%, respectively. The results of image segmentation approximate the manual segmentation results by the technical doctor. Moreover, our method shows superior flexibility to newly published method with comparable performance. The advantage of our method is verified with experimental results, which is described in detail. PMID:27631012

  4. Automatic Registration Method for Optical Remote Sensing Images with Large Background Variations Using Line Segments

    Directory of Open Access Journals (Sweden)

    Xiaolong Shi

    2016-05-01

    Full Text Available Image registration is an essential step in the process of image fusion, environment surveillance and change detection. Finding correct feature matches during the registration process proves to be difficult, especially for remote sensing images with large background variations (e.g., images taken pre and post an earthquake or flood. Traditional registration methods based on local intensity probably cannot maintain steady performances, as differences are significant in the same area of the corresponding images, and ground control points are not always available in many disaster images. In this paper, an automatic image registration method based on the line segments on the main shape contours (e.g., coastal lines, long roads and mountain ridges is proposed for remote sensing images with large background variations because the main shape contours can hold relatively more invariant information. First, a line segment detector called EDLines (Edge Drawing Lines, which was proposed by Akinlar et al. in 2011, is used to extract line segments from two corresponding images, and a line validation step is performed to remove meaningless and fragmented line segments. Then, a novel line segment descriptor with a new histogram binning strategy, which is robust to global geometrical distortions, is generated for each line segment based on the geometrical relationships,including both the locations and orientations of theremaining line segments relative to it. As a result of the invariance of the main shape contours, correct line segment matches will have similar descriptors and can be obtained by cross-matching among the descriptors. Finally, a spatial consistency measure is used to remove incorrect matches, and transformation parameters between the reference and sensed images can be figured out. Experiments with images from different types of satellite datasets, such as Landsat7, QuickBird, WorldView, and so on, demonstrate that the proposed algorithm is

  5. A fully automatic three-step liver segmentation method on LDA-based probability maps for multiple contrast MR images.

    Science.gov (United States)

    Gloger, Oliver; Kühn, Jens; Stanski, Adam; Völzke, Henry; Puls, Ralf

    2010-07-01

    Automatic 3D liver segmentation in magnetic resonance (MR) data sets has proven to be a very challenging task in the domain of medical image analysis. There exist numerous approaches for automatic 3D liver segmentation on computer tomography data sets that have influenced the segmentation of MR images. In contrast to previous approaches to liver segmentation in MR data sets, we use all available MR channel information of different weightings and formulate liver tissue and position probabilities in a probabilistic framework. We apply multiclass linear discriminant analysis as a fast and efficient dimensionality reduction technique and generate probability maps then used for segmentation. We develop a fully automatic three-step 3D segmentation approach based upon a modified region growing approach and a further threshold technique. Finally, we incorporate characteristic prior knowledge to improve the segmentation results. This novel 3D segmentation approach is modularized and can be applied for normal and fat accumulated liver tissue properties.

  6. Deep learning for automatic localization, identification, and segmentation of vertebral bodies in volumetric MR images

    Science.gov (United States)

    Suzani, Amin; Rasoulian, Abtin; Seitel, Alexander; Fels, Sidney; Rohling, Robert N.; Abolmaesumi, Purang

    2015-03-01

    This paper proposes an automatic method for vertebra localization, labeling, and segmentation in multi-slice Magnetic Resonance (MR) images. Prior work in this area on MR images mostly requires user interaction while our method is fully automatic. Cubic intensity-based features are extracted from image voxels. A deep learning approach is used for simultaneous localization and identification of vertebrae. The localized points are refined by local thresholding in the region of the detected vertebral column. Thereafter, a statistical multi-vertebrae model is initialized on the localized vertebrae. An iterative Expectation Maximization technique is used to register the vertebral body of the model to the image edges and obtain a segmentation of the lumbar vertebral bodies. The method is evaluated by applying to nine volumetric MR images of the spine. The results demonstrate 100% vertebra identification and a mean surface error of below 2.8 mm for 3D segmentation. Computation time is less than three minutes per high-resolution volumetric image.

  7. Image Based Hair Segmentation Algorithm for the Application of Automatic Facial Caricature Synthesis

    Directory of Open Access Journals (Sweden)

    Yehu Shen

    2014-01-01

    Full Text Available Hair is a salient feature in human face region and are one of the important cues for face analysis. Accurate detection and presentation of hair region is one of the key components for automatic synthesis of human facial caricature. In this paper, an automatic hair detection algorithm for the application of automatic synthesis of facial caricature based on a single image is proposed. Firstly, hair regions in training images are labeled manually and then the hair position prior distributions and hair color likelihood distribution function are estimated from these labels efficiently. Secondly, the energy function of the test image is constructed according to the estimated prior distributions of hair location and hair color likelihood. This energy function is further optimized according to graph cuts technique and initial hair region is obtained. Finally, K-means algorithm and image postprocessing techniques are applied to the initial hair region so that the final hair region can be segmented precisely. Experimental results show that the average processing time for each image is about 280 ms and the average hair region detection accuracy is above 90%. The proposed algorithm is applied to a facial caricature synthesis system. Experiments proved that with our proposed hair segmentation algorithm the facial caricatures are vivid and satisfying.

  8. An efficient two-objective automatic SAR image segmentation framework using artificial immune system

    Science.gov (United States)

    Yang, Dongdong; Niu, Ruican; Fei, Rong; Jiang, Qiaoyong; Li, Hongye; Cao, Zijian

    2015-12-01

    Here, an efficient multi-objective automatic segmentation framework (MASF) is formulated and applied to synthetic aperture radar (SAR) image unsupervised classification. In the framework, three important issues are presented: 1) two reasonable image preprocessing techniques, including spatial filtering and watershed operator, are discussed at the initial stage of the framework; 2)then, an efficient immune multi-objective optimization algorithm with uniform clone, adaptive selection by online nondominated solutions, and dynamic deletion in diversity maintenance is proposed; 3 two very simple, but very efficient conflicting clustering validity indices are incorporated into the framework and simultaneously optimized. Two simulated SAR data and two complicated real images are used to quantitatively validate its effectiveness. In addition, four other state-of-the-art image segmentation methods are employed for comparison.

  9. Color Segmentation Approach of Infrared Thermography Camera Image for Automatic Fault Diagnosis

    International Nuclear Information System (INIS)

    Predictive maintenance based on fault diagnosis becomes very important in current days to assure the availability and reliability of a system. The main purpose of this research is to configure a computer software for automatic fault diagnosis based on image model acquired from infrared thermography camera using color segmentation approach. This technique detects hot spots in equipment of the plants. Image acquired from camera is first converted to RGB (Red, Green, Blue) image model and then converted to CMYK (Cyan, Magenta, Yellow, Key for Black) image model. Assume that the yellow color in the image represented the hot spot in the equipment, the CMYK image model is then diagnosed using color segmentation model to estimate the fault. The software is configured utilizing Borland Delphi 7.0 computer programming language. The performance is then tested for 10 input infrared thermography images. The experimental result shows that the software capable to detect the faulty automatically with performance value of 80 % from 10 sheets of image input. (author)

  10. Development of image-processing software for automatic segmentation of brain tumors in MR images

    International Nuclear Information System (INIS)

    Most of the commercially available software for brain tumor segmentation have limited functionality and frequently lack the careful validation that is required for clinical studies. We have developed an image-analysis software package called 'Prometheus,' which performs neural system-based segmentation operations on MR images using pre-trained information. The software also has the capability to improve its segmentation performance by using the training module of the neural system. The aim of this article is to present the design and modules of this software. The segmentation module of Prometheus can be used primarily for image analysis in MR images. Prometheus was validated against manual segmentation by a radiologist and its mean sensitivity and specificity was found to be 85. 7 4.89% and 93. 2±2.87%, respectively. Similarly, the mean segmentation accuracy and mean correspondence ratio was found to be 92. 35±3. 37% and 0. 78±0. 046, respectively. (author)

  11. Fully Automatic Method for 3D T1-Weighted Brain Magnetic Resonance Images Segmentation

    Directory of Open Access Journals (Sweden)

    Bouchaib Cherradi

    2011-05-01

    Full Text Available Accurate segmentation of brain MR images is of interest for many brain disorders. However, dueto several factors such noise, imaging artefacts, intrinsic tissue variation and partial volumeeffects, brain extraction and tissue segmentation remains a challenging task. So, in this paper, afull automatic method for segmentation of anatomical 3D brain MR images is proposed. Themethod consists of many steps. First, noise reduction by median filtering is done; secondsegmentation of brain/non-brain tissue is performed by using a Threshold Morphologic BrainExtraction method (TMBE. Then initial centroids estimation by gray level histogram analysis isexecuted, this stage yield to a Modified version of Fuzzy C-means Algorithm (MFCM that is usedfor MRI tissue segmentation. Finally 3D visualisation of the three clusters (CSF, GM and WM isperformed. The efficiency of the proposed method is demonstrated by extensive segmentationexperiments using simulated and real MR images. A confrontation of the method with similarmethods of the literature has been undertaken trough different performance measures. TheMFCM for tissue segmentation introduce a gain in rapidity of convergence of about 70%.

  12. Automatic nuclei segmentation in H&E stained breast cancer histopathology images.

    Directory of Open Access Journals (Sweden)

    Mitko Veta

    Full Text Available The introduction of fast digital slide scanners that provide whole slide images has led to a revival of interest in image analysis applications in pathology. Segmentation of cells and nuclei is an important first step towards automatic analysis of digitized microscopy images. We therefore developed an automated nuclei segmentation method that works with hematoxylin and eosin (H&E stained breast cancer histopathology images, which represent regions of whole digital slides. The procedure can be divided into four main steps: 1 pre-processing with color unmixing and morphological operators, 2 marker-controlled watershed segmentation at multiple scales and with different markers, 3 post-processing for rejection of false regions and 4 merging of the results from multiple scales. The procedure was developed on a set of 21 breast cancer cases (subset A and tested on a separate validation set of 18 cases (subset B. The evaluation was done in terms of both detection accuracy (sensitivity and positive predictive value and segmentation accuracy (Dice coefficient. The mean estimated sensitivity for subset A was 0.875 (±0.092 and for subset B 0.853 (±0.077. The mean estimated positive predictive value was 0.904 (±0.075 and 0.886 (±0.069 for subsets A and B, respectively. For both subsets, the distribution of the Dice coefficients had a high peak around 0.9, with the vast majority of segmentations having values larger than 0.8.

  13. Automatized segmentation of photovoltaic modules in IR-images with extreme noise

    Science.gov (United States)

    Vetter, Andreas; Hepp, Johannes; Brabec, Christoph J.

    2016-05-01

    Local electric defects may result in considerable performance losses in solar cells. Infrared thermography is an essential tool to detect these defects on photovoltaic modules. Accordingly, IR-thermography is frequently used in R&D labs of PV manufactures and, furthermore, outdoors in order to identify faulty modules in PV-power plants. Massive amount of data is acquired which needs to be analyzed. An automatized method for detecting solar modules in IR-images would enable a faster and automatized analysis of the data. However, IR-images tend to suffer from rather large noise, which makes an automatized segmentation challenging. The aim of this study was to establish a reliable segmentation algorithm for R&D labs. We propose an algorithm, which detects a solar cell or module within an IR-image with large noise. We tested the algorithm on images of 10 PV-samples characterized by highly sensitive dark lock-in thermography (DLIT). The algorithm proved to be very reliable in detecting correctly the solar module. In our study, we focused on thin film solar cells, however, a transfer of the algorithm to other cell types is straight forward.

  14. ICA based automatic segmentation of dynamic H(2)(15)O cardiac PET images.

    Science.gov (United States)

    Margadán-Méndez, Margarita; Juslin, Anu; Nesterov, Sergey V; Kalliokoski, Kari; Knuuti, Juhani; Ruotsalainen, Ulla

    2010-05-01

    In this study, we applied an iterative independent component analysis (ICA) method for the separation of cardiac tissue components (myocardium, right, and left ventricle) from dynamic positron emission tomography (PET) images. Previous phantom and animal studies have shown that ICA separation extracts the cardiac structures accurately. Our goal in this study was to investigate the methodology with human studies. The ICA separated cardiac structures were used to calculate the myocardial perfusion in two different cases: 1) the regions of interest were drawn manually on the ICA separated component images and 2) the volumes of interest (VOI) were automatically segmented from the component images. For the whole myocardium, the perfusion values of 25 rest and six drug-induced stress studies obtained with these methods were compared to the values from the manually drawn regions of interest on differential images. The separation of the rest and stress studies using ICA-based methods was successful in all cases. The visualization of the cardiac structures from H (2) (15) O PET studies was improved with the ICA separation. Also, the automatic segmentation of the VOI seemed to be feasible. PMID:19273031

  15. A Fast and Fully Automatic Method for Cerebrovascular Segmentation on Time-of-Flight (TOF) MRA Image

    OpenAIRE

    Gao, Xin; Uchiyama, Yoshikazu; Zhou, Xiangrong; HARA, TAKESHI; Asano, Takahiko; Fujita, Hiroshi

    2010-01-01

    The precise three-dimensional (3-D) segmentation of cerebral vessels from magnetic resonance angiography (MRA) images is essential for the detection of cerebrovascular diseases (e.g., occlusion, aneurysm). The complex 3-D structure of cerebral vessels and the low contrast of thin vessels in MRA images make precise segmentation difficult. We present a fast, fully automatic segmentation algorithm based on statistical model analysis and improved curve evolution for extracting the 3-D cerebral ve...

  16. Automatic image segmentation for treatment planning in radiotherapy; Segmentation automatique des images pour la planifi cation dosimetrique en radiotherapie

    Energy Technology Data Exchange (ETDEWEB)

    Pasquiera, D. [Centre Galilee, polyclinique de la Louviere, 59 - Lille (France); Peyrodie, L. [Ecole des hautes etudes d' ingenieur, 59 - Lille (France); Laboratoire d' automatique, genie informatique et signal (LAGIS), Cite scientifi que, 59 - Villeneuve d' Ascq (France); Denis, F. [Centre Jean-Bernard, 72 - Le Mans (France); Pointreau, Y.; Bera, G. [Clinique d' oncologie radiotherapie, Centre Henry-S.-Kaplan, CHU Bretonneau, 37 - Tours (France); Lartigau, E. [Departement universitaire de radiotherapie, Centre O. Lambret, Universite Lille 2, 59 - Lille (France)

    2010-07-01

    One drawback of the growth in conformal radiotherapy and image-guided radiotherapy is the increased time needed to define the volumes of interest. This also results in inter- and intra-observer variability. However, developments in computing and image processing have enabled these tasks to be partially or totally automated. This article will provide a detailed description of the main principles of image segmentation in radiotherapy, its applications and the most recent results in a clinical context. (authors)

  17. Atlas-based automatic segmentation of MR images: Validation study on the brainstem in radiotherapy context

    International Nuclear Information System (INIS)

    Purpose: Brain tumor radiotherapy requires the volume measurements and the localization of several individual brain structures. Any tool that can assist the physician to perform the delineation would then be of great help. Among segmentation methods, those that are atlas-based are appealing because they are able to segment several structures simultaneously, while preserving the anatomy topology. This study aims to evaluate such a method in a clinical context. Methods and materials: The brain atlas is made of two three-dimensional (3D) volumes: the first is an artificial 3D magnetic resonance imaging (MRI); the second consists of the segmented structures in this artificial MRI. The elastic registration of the artificial 3D MRI against a patient 3D MRI dataset yields an elastic transformation that can be applied to the labeled image. The elastic transformation is obtained by minimizing the sum of the square differences of the image intensities and derived from the optical flow principle. This automatic delineation (AD) enables the mapping of the segmented structures onto the patient MRI. Parameters of the AD have been optimized on a set of 20 patients. Results are obtained on a series of 6 patients' MRI. A comprehensive validation of the AD has been conducted on performance of atlas-based segmentation in a clinical context with volume, position, sensitivity, and specificity that are compared by a panel of seven experimented physicians for the brain tumor treatments. Results: Expert interobserver volume variability ranged from 16.70 cm3 to 41.26 cm3. For patients, the ratio of minimal to maximal volume ranged from 48% to 70%. Median volume varied from 19.47 cm3 to 27.66 cm3 and volume of the brainstem calculated by AD varied from 17.75 cm3 to 24.54 cm3. Medians of experts ranged, respectively, for sensitivity and specificity, from 0.75 to 0.98 and from 0.85 to 0.99. Median of AD were, respectively, 0.77 and 0.97. Mean of experts ranged, respectively, from 0.78 to 0

  18. An adaptive spatial clustering method for automatic brain MR image segmentation

    Institute of Scientific and Technical Information of China (English)

    Jingdan Zhang; Daoqing Dai

    2009-01-01

    In this paper, an adaptive spatial clustering method is presented for automatic brain MR image segmentation, which is based on a competitive learning algorithm-self-organizing map (SOM). We use a pattern recognition approach in terms of feature generation and classifier design. Firstly, a multi-dimensional feature vector is constructed using local spatial information. Then, an adaptive spatial growing hierarchical SOM (ASGHSOM) is proposed as the classifier, which is an extension of SOM, fusing multi-scale segmentation with the competitive learning clustering algorithm to overcome the problem of overlapping grey-scale intensities on boundary regions. Furthermore, an adaptive spatial distance is integrated with ASGHSOM, in which local spatial information is considered in the cluster-ing process to reduce the noise effect and the classification ambiguity. Our proposed method is validated by extensive experiments using both simulated and real MR data with varying noise level, and is compared with the state-of-the-art algorithms.

  19. Automatic segmentation of blood vessels from retinal fundus images through image processing and data mining techniques

    Indian Academy of Sciences (India)

    R Geetharamani; Lakshmi Balasubramanian

    2015-09-01

    Machine Learning techniques have been useful in almost every field of concern. Data Mining, a branch of Machine Learning is one of the most extensively used techniques. The ever-increasing demands in the field of medicine are being addressed by computational approaches in which Big Data analysis, image processing and data mining are on top priority. These techniques have been exploited in the domain of ophthalmology for better retinal fundus image analysis. Blood vessels, one of the most significant retinal anatomical structures are analysed for diagnosis of many diseases like retinopathy, occlusion and many other vision threatening diseases. Vessel segmentation can also be a pre-processing step for segmentation of other retinal structures like optic disc, fovea, microneurysms, etc. In this paper, blood vessel segmentation is attempted through image processing and data mining techniques. The retinal blood vessels were segmented through color space conversion and color channel extraction, image pre-processing, Gabor filtering, image postprocessing, feature construction through application of principal component analysis, k-means clustering and first level classification using Naïve–Bayes classification algorithm and second level classification using C4.5 enhanced with bagging techniques. Association of every pixel against the feature vector necessitates Big Data analysis. The proposed methodology was evaluated on a publicly available database, STARE. The results reported 95.05% accuracy on entire dataset; however the accuracy was 95.20% on normal images and 94.89% on pathological images. A comparison of these results with the existing methodologies is also reported. This methodology can help ophthalmologists in better and faster analysis and hence early treatment to the patients.

  20. Automatic iterative segmentation of multiple sclerosis lesions using Student's t mixture models and probabilistic anatomical atlases in FLAIR images.

    Science.gov (United States)

    Freire, Paulo G L; Ferrari, Ricardo J

    2016-06-01

    Multiple sclerosis (MS) is a demyelinating autoimmune disease that attacks the central nervous system (CNS) and affects more than 2 million people worldwide. The segmentation of MS lesions in magnetic resonance imaging (MRI) is a very important task to assess how a patient is responding to treatment and how the disease is progressing. Computational approaches have been proposed over the years to segment MS lesions and reduce the amount of time spent on manual delineation and inter- and intra-rater variability and bias. However, fully-automatic segmentation of MS lesions still remains an open problem. In this work, we propose an iterative approach using Student's t mixture models and probabilistic anatomical atlases to automatically segment MS lesions in Fluid Attenuated Inversion Recovery (FLAIR) images. Our technique resembles a refinement approach by iteratively segmenting brain tissues into smaller classes until MS lesions are grouped as the most hyperintense one. To validate our technique we used 21 clinical images from the 2015 Longitudinal Multiple Sclerosis Lesion Segmentation Challenge dataset. Evaluation using Dice Similarity Coefficient (DSC), True Positive Ratio (TPR), False Positive Ratio (FPR), Volume Difference (VD) and Pearson's r coefficient shows that our technique has a good spatial and volumetric agreement with raters' manual delineations. Also, a comparison between our proposal and the state-of-the-art shows that our technique is comparable and, in some cases, better than some approaches, thus being a viable alternative for automatic MS lesion segmentation in MRI.

  1. Automatic segmentation of the bone and extraction of the bone cartilage interface from magnetic resonance images of the knee

    Science.gov (United States)

    Fripp, Jurgen; Crozier, Stuart; Warfield, Simon K.; Ourselin, Sébastien

    2007-03-01

    The accurate segmentation of the articular cartilages from magnetic resonance (MR) images of the knee is important for clinical studies and drug trials into conditions like osteoarthritis. Currently, segmentations are obtained using time-consuming manual or semi-automatic algorithms which have high inter- and intra-observer variabilities. This paper presents an important step towards obtaining automatic and accurate segmentations of the cartilages, namely an approach to automatically segment the bones and extract the bone-cartilage interfaces (BCI) in the knee. The segmentation is performed using three-dimensional active shape models, which are initialized using an affine registration to an atlas. The BCI are then extracted using image information and prior knowledge about the likelihood of each point belonging to the interface. The accuracy and robustness of the approach was experimentally validated using an MR database of fat suppressed spoiled gradient recall images. The (femur, tibia, patella) bone segmentation had a median Dice similarity coefficient of (0.96, 0.96, 0.89) and an average point-to-surface error of 0.16 mm on the BCI. The extracted BCI had a median surface overlap of 0.94 with the real interface, demonstrating its usefulness for subsequent cartilage segmentation or quantitative analysis.

  2. Automatic Spatially-Adaptive Balancing of Energy Terms for Image Segmentation

    CERN Document Server

    Rao, Josna; Abugharbieh, Rafeef

    2009-01-01

    Image segmentation techniques are predominately based on parameter-laden optimization. The objective function typically involves weights for balancing competing image fidelity and segmentation regularization cost terms. Setting these weights suitably has been a painstaking, empirical process. Even if such ideal weights are found for a novel image, most current approaches fix the weight across the whole image domain, ignoring the spatially-varying properties of object shape and image appearance. We propose a novel technique that autonomously balances these terms in a spatially-adaptive manner through the incorporation of image reliability in a graph-based segmentation framework. We validate on synthetic data achieving a reduction in mean error of 47% (p-value << 0.05) when compared to the best fixed parameter segmentation. We also present results on medical images (including segmentations of the corpus callosum and brain tissue in MRI data) and on natural images.

  3. Image Based Hair Segmentation Algorithm for the Application of Automatic Facial Caricature Synthesis

    OpenAIRE

    2014-01-01

    Hair is a salient feature in human face region and are one of the important cues for face analysis. Accurate detection and presentation of hair region is one of the key components for automatic synthesis of human facial caricature. In this paper, an automatic hair detection algorithm for the application of automatic synthesis of facial caricature based on a single image is proposed. Firstly, hair regions in training images are labeled manually and then the hair position prior distributions an...

  4. Image processing based automatic diagnosis of glaucoma using wavelet features of segmented optic disc from fundus image.

    Science.gov (United States)

    Singh, Anushikha; Dutta, Malay Kishore; ParthaSarathi, M; Uher, Vaclav; Burget, Radim

    2016-02-01

    Glaucoma is a disease of the retina which is one of the most common causes of permanent blindness worldwide. This paper presents an automatic image processing based method for glaucoma diagnosis from the digital fundus image. In this paper wavelet feature extraction has been followed by optimized genetic feature selection combined with several learning algorithms and various parameter settings. Unlike the existing research works where the features are considered from the complete fundus or a sub image of the fundus, this work is based on feature extraction from the segmented and blood vessel removed optic disc to improve the accuracy of identification. The experimental results presented in this paper indicate that the wavelet features of the segmented optic disc image are clinically more significant in comparison to features of the whole or sub fundus image in the detection of glaucoma from fundus image. Accuracy of glaucoma identification achieved in this work is 94.7% and a comparison with existing methods of glaucoma detection from fundus image indicates that the proposed approach has improved accuracy of classification.

  5. A General System for Automatic Biomedical Image Segmentation Using Intensity Neighborhoods

    Directory of Open Access Journals (Sweden)

    Cheng Chen

    2011-01-01

    Full Text Available Image segmentation is important with applications to several problems in biology and medicine. While extensively researched, generally, current segmentation methods perform adequately in the applications for which they were designed, but often require extensive modifications or calibrations before being used in a different application. We describe an approach that, with few modifications, can be used in a variety of image segmentation problems. The approach is based on a supervised learning strategy that utilizes intensity neighborhoods to assign each pixel in a test image its correct class based on training data. We describe methods for modeling rotations and variations in scales as well as a subset selection for training the classifiers. We show that the performance of our approach in tissue segmentation tasks in magnetic resonance and histopathology microscopy images, as well as nuclei segmentation from fluorescence microscopy images, is similar to or better than several algorithms specifically designed for each of these applications.

  6. Automatic Tracing and Segmentation of Rat Mammary Fat Pads in MRI Image Sequences Based on Cartoon-Texture Model

    Institute of Scientific and Technical Information of China (English)

    TU Shengxian; ZHANG Su; CHEN Yazhu; Freedman Matthew T; WANG Bin; XUAN Jason; WANG Yue

    2009-01-01

    The growth patterns of mammary fat pads and glandular tissues inside the fat pads may be related with the risk factors of breast cancer.Quantitative measurements of this relationship are available after segmentation of mammary pads and glandular tissues.Rat fat pads may lose continuity along image sequences or adjoin similar intensity areas like epidermis and subcutaneous regions.A new approach for automatic tracing and segmentation of fat pads in magnetic resonance imaging (MRI) image sequences is presented,which does not require that the number of pads be constant or the spatial location of pads be adjacent among image slices.First,each image is decomposed into cartoon image and texture image based on cartoon-texture model.They will be used as smooth image and feature image for segmentation and for targeting pad seeds,respectively.Then,two-phase direct energy segmentation based on Chan-Vese active contour model is applied to partitioning the cartoon image into a set of regions,from which the pad boundary is traced iteratively from the pad seed.A tracing algorithm based on scanning order is proposed to accurately trace the pad boundary,which effectively removes the epidermis attached to the pad without any post processing as well as solves the problem of over-segmentation of some small holes inside the pad.The experimental results demonstrate the utility of this approach in accurate delineation of various numbers of mammary pads from several sets of MRI images.

  7. Automatic segmentation of cerebral white matter hyperintensities using only 3D FLAIR images

    NARCIS (Netherlands)

    Lopes Simoes, A.R.; Monninghoff, C.; Dlugaj, M.; Weimar, C.; Wanke, I.; Cappellen van Walsum, A.; Slump, C.H.

    2013-01-01

    Magnetic Resonance (MR) white matter hyperintensities have been shown to predict an increased risk of developing cognitive decline. However, their actual role in the conversion to dementia is still not fully understood. Automatic segmentation methods can help in the screening and monitoring of Mild

  8. Automatic segmentation of cerebral white matter hyperintensities using only 3D FLAIR images.

    NARCIS (Netherlands)

    Simoes, R.; Monninghoff, C.; Dlugaj, M.; Weimar, C.; Wanke, I.; Cappellen van Walsum, A.M. van; Slump, C.

    2013-01-01

    Magnetic Resonance (MR) white matter hyperintensities have been shown to predict an increased risk of developing cognitive decline. However, their actual role in the conversion to dementia is still not fully understood. Automatic segmentation methods can help in the screening and monitoring of Mild

  9. ATLAAS: an automatic decision tree-based learning algorithm for advanced image segmentation in positron emission tomography

    Science.gov (United States)

    Berthon, Beatrice; Marshall, Christopher; Evans, Mererid; Spezi, Emiliano

    2016-07-01

    Accurate and reliable tumour delineation on positron emission tomography (PET) is crucial for radiotherapy treatment planning. PET automatic segmentation (PET-AS) eliminates intra- and interobserver variability, but there is currently no consensus on the optimal method to use, as different algorithms appear to perform better for different types of tumours. This work aimed to develop a predictive segmentation model, trained to automatically select and apply the best PET-AS method, according to the tumour characteristics. ATLAAS, the automatic decision tree-based learning algorithm for advanced segmentation is based on supervised machine learning using decision trees. The model includes nine PET-AS methods and was trained on a 100 PET scans with known true contour. A decision tree was built for each PET-AS algorithm to predict its accuracy, quantified using the Dice similarity coefficient (DSC), according to the tumour volume, tumour peak to background SUV ratio and a regional texture metric. The performance of ATLAAS was evaluated for 85 PET scans obtained from fillable and printed subresolution sandwich phantoms. ATLAAS showed excellent accuracy across a wide range of phantom data and predicted the best or near-best segmentation algorithm in 93% of cases. ATLAAS outperformed all single PET-AS methods on fillable phantom data with a DSC of 0.881, while the DSC for H&N phantom data was 0.819. DSCs higher than 0.650 were achieved in all cases. ATLAAS is an advanced automatic image segmentation algorithm based on decision tree predictive modelling, which can be trained on images with known true contour, to predict the best PET-AS method when the true contour is unknown. ATLAAS provides robust and accurate image segmentation with potential applications to radiation oncology.

  10. Semi-automatic segmentation of vertebral bodies in volumetric MR images using a statistical shape+pose model

    Science.gov (United States)

    Suzani, Amin; Rasoulian, Abtin; Fels, Sidney; Rohling, Robert N.; Abolmaesumi, Purang

    2014-03-01

    Segmentation of vertebral structures in magnetic resonance (MR) images is challenging because of poor con­trast between bone surfaces and surrounding soft tissue. This paper describes a semi-automatic method for segmenting vertebral bodies in multi-slice MR images. In order to achieve a fast and reliable segmentation, the method takes advantage of the correlation between shape and pose of different vertebrae in the same patient by using a statistical multi-vertebrae anatomical shape+pose model. Given a set of MR images of the spine, we initially reduce the intensity inhomogeneity in the images by using an intensity-correction algorithm. Then a 3D anisotropic diffusion filter smooths the images. Afterwards, we extract edges from a relatively small region of the pre-processed image with a simple user interaction. Subsequently, an iterative Expectation Maximization tech­nique is used to register the statistical multi-vertebrae anatomical model to the extracted edge points in order to achieve a fast and reliable segmentation for lumbar vertebral bodies. We evaluate our method in terms of speed and accuracy by applying it to volumetric MR images of the spine acquired from nine patients. Quantitative and visual results demonstrate that the method is promising for segmentation of vertebral bodies in volumetric MR images.

  11. Length-adaptive graph search for automatic segmentation of pathological features in optical coherence tomography images

    Science.gov (United States)

    Keller, Brenton; Cunefare, David; Grewal, Dilraj S.; Mahmoud, Tamer H.; Izatt, Joseph A.; Farsiu, Sina

    2016-07-01

    We introduce a metric in graph search and demonstrate its application for segmenting retinal optical coherence tomography (OCT) images of macular pathology. Our proposed "adjusted mean arc length" (AMAL) metric is an adaptation of the lowest mean arc length search technique for automated OCT segmentation. We compare this method to Dijkstra's shortest path algorithm, which we utilized previously in our popular graph theory and dynamic programming segmentation technique. As an illustrative example, we show that AMAL-based length-adaptive segmentation outperforms the shortest path in delineating the retina/vitreous boundary of patients with full-thickness macular holes when compared with expert manual grading.

  12. Automatic segmentation of Leishmania parasite in microscopic images using a modified CV level set method

    Science.gov (United States)

    Farahi, Maria; Rabbani, Hossein; Talebi, Ardeshir; Sarrafzadeh, Omid; Ensafi, Shahab

    2015-12-01

    Visceral Leishmaniasis is a parasitic disease that affects liver, spleen and bone marrow. According to World Health Organization report, definitive diagnosis is possible just by direct observation of the Leishman body in the microscopic image taken from bone marrow samples. We utilize morphological and CV level set method to segment Leishman bodies in digital color microscopic images captured from bone marrow samples. Linear contrast stretching method is used for image enhancement and morphological method is applied to determine the parasite regions and wipe up unwanted objects. Modified global and local CV level set methods are proposed for segmentation and a shape based stopping factor is used to hasten the algorithm. Manual segmentation is considered as ground truth to evaluate the proposed method. This method is tested on 28 samples and achieved 10.90% mean of segmentation error for global model and 9.76% for local model.

  13. Automatic segmentation and classification of tendon nuclei from IHC stained images

    Science.gov (United States)

    Kuok, Chan-Pang; Wu, Po-Ting; Jou, I.-Ming; Su, Fong-Chin; Sun, Yung-Nien

    2015-12-01

    Immunohistochemical (IHC) staining is commonly used for detecting cells in microscopy. It is used for analyzing many types of diseases, e.g. breast cancer. Dispersion problem often exist at cell staining which will affect the accuracy of automatic counting. In this paper, we introduce a new method to overcome this problem. Otsu's thresholding method is first applied to exclude the background, so that only cells with dispersed staining are left at foreground, and then refinement will be applied by local adaptive thresholding method according to the irregularity index of the segmented shape at foreground. The segmentation results are also compared to the refinement results using Otsu's thresholding method. Cell classification based on the shape and color indices obtained from the segmentation result is applied to determine the cell condition into normal, abnormal and suspected abnormal cases.

  14. Automatic Melody Segmentation

    NARCIS (Netherlands)

    Rodríguez López, Marcelo

    2016-01-01

    The work presented in this dissertation investigates music segmentation. In the field of Musicology, segmentation refers to a score analysis technique, whereby notated pieces or passages of these pieces are divided into “units” referred to as sections, periods, phrases, and so on. Segmentation analy

  15. An Automatic Cognitive Graph-Based Segmentation for Detection of Blood Vessels in Retinal Images

    Directory of Open Access Journals (Sweden)

    Rasha Al Shehhi

    2016-01-01

    Full Text Available This paper presents a hierarchical graph-based segmentation for blood vessel detection in digital retinal images. This segmentation employs some of perceptual Gestalt principles: similarity, closure, continuity, and proximity to merge segments into coherent connected vessel-like patterns. The integration of Gestalt principles is based on object-based features (e.g., color and black top-hat (BTH morphology and context and graph-analysis algorithms (e.g., Dijkstra path. The segmentation framework consists of two main steps: preprocessing and multiscale graph-based segmentation. Preprocessing is to enhance lighting condition, due to low illumination contrast, and to construct necessary features to enhance vessel structure due to sensitivity of vessel patterns to multiscale/multiorientation structure. Graph-based segmentation is to decrease computational processing required for region of interest into most semantic objects. The segmentation was evaluated on three publicly available datasets. Experimental results show that preprocessing stage achieves better results compared to state-of-the-art enhancement methods. The performance of the proposed graph-based segmentation is found to be consistent and comparable to other existing methods, with improved capability of detecting small/thin vessels.

  16. An Automatic Segmentation and Classification Framework Based on PCNN Model for Single Tooth in MicroCT Images.

    Science.gov (United States)

    Wang, Liansheng; Li, Shusheng; Chen, Rongzhen; Liu, Sze-Yu; Chen, Jyh-Cheng

    2016-01-01

    Accurate segmentation and classification of different anatomical structures of teeth from medical images plays an essential role in many clinical applications. Usually, the anatomical structures of teeth are manually labelled by experienced clinical doctors, which is time consuming. However, automatic segmentation and classification is a challenging task because the anatomical structures and surroundings of the tooth in medical images are rather complex. Therefore, in this paper, we propose an effective framework which is designed to segment the tooth with a Selective Binary and Gaussian Filtering Regularized Level Set (GFRLS) method improved by fully utilizing three dimensional (3D) information, and classify the tooth by employing unsupervised learning Pulse Coupled Neural Networks (PCNN) model. In order to evaluate the proposed method, the experiments are conducted on the different datasets of mandibular molars and the experimental results show that our method can achieve better accuracy and robustness compared to other four state of the art clustering methods. PMID:27322421

  17. An Automatic Segmentation and Classification Framework Based on PCNN Model for Single Tooth in MicroCT Images.

    Directory of Open Access Journals (Sweden)

    Liansheng Wang

    Full Text Available Accurate segmentation and classification of different anatomical structures of teeth from medical images plays an essential role in many clinical applications. Usually, the anatomical structures of teeth are manually labelled by experienced clinical doctors, which is time consuming. However, automatic segmentation and classification is a challenging task because the anatomical structures and surroundings of the tooth in medical images are rather complex. Therefore, in this paper, we propose an effective framework which is designed to segment the tooth with a Selective Binary and Gaussian Filtering Regularized Level Set (GFRLS method improved by fully utilizing three dimensional (3D information, and classify the tooth by employing unsupervised learning Pulse Coupled Neural Networks (PCNN model. In order to evaluate the proposed method, the experiments are conducted on the different datasets of mandibular molars and the experimental results show that our method can achieve better accuracy and robustness compared to other four state of the art clustering methods.

  18. An Automatic Segmentation and Classification Framework Based on PCNN Model for Single Tooth in MicroCT Images

    Science.gov (United States)

    Wang, Liansheng; Li, Shusheng; Chen, Rongzhen; Liu, Sze-Yu; Chen, Jyh-Cheng

    2016-01-01

    Accurate segmentation and classification of different anatomical structures of teeth from medical images plays an essential role in many clinical applications. Usually, the anatomical structures of teeth are manually labelled by experienced clinical doctors, which is time consuming. However, automatic segmentation and classification is a challenging task because the anatomical structures and surroundings of the tooth in medical images are rather complex. Therefore, in this paper, we propose an effective framework which is designed to segment the tooth with a Selective Binary and Gaussian Filtering Regularized Level Set (GFRLS) method improved by fully utilizing three dimensional (3D) information, and classify the tooth by employing unsupervised learning Pulse Coupled Neural Networks (PCNN) model. In order to evaluate the proposed method, the experiments are conducted on the different datasets of mandibular molars and the experimental results show that our method can achieve better accuracy and robustness compared to other four state of the art clustering methods. PMID:27322421

  19. Automatic CT Brain Image Segmentation Using Two Level Multiresolution Mixture Model of EM

    Science.gov (United States)

    Jiji, G. Wiselin; Dehmeshki, Jamshid

    2014-04-01

    Tissue classification in computed tomography (CT) brain images is an important issue in the analysis of several brain dementias. A combination of different approaches for the segmentation of brain images is presented in this paper. A multi resolution algorithm is proposed along with scaled versions using Gaussian filter and wavelet analysis that extends expectation maximization (EM) algorithm. It is found that it is less sensitive to noise and got more accurate image segmentation than traditional EM. Moreover the algorithm has been applied on 20 sets of CT of the human brain and compared with other works. The segmentation results show the advantages of the proposed work have achieved more promising results and the results have been tested with Doctors.

  20. Automatic Melody Segmentation

    OpenAIRE

    Rodríguez López, Marcelo

    2016-01-01

    The work presented in this dissertation investigates music segmentation. In the field of Musicology, segmentation refers to a score analysis technique, whereby notated pieces or passages of these pieces are divided into “units” referred to as sections, periods, phrases, and so on. Segmentation analysis is a widespread practice among musicians: performers use it to help them memorise pieces, music theorists and historians use it to compare works, music students use it to understand the composi...

  1. Electroporation-based treatment planning for deep-seated tumors based on automatic liver segmentation of MRI images.

    Directory of Open Access Journals (Sweden)

    Denis Pavliha

    Full Text Available Electroporation is the phenomenon that occurs when a cell is exposed to a high electric field, which causes transient cell membrane permeabilization. A paramount electroporation-based application is electrochemotherapy, which is performed by delivering high-voltage electric pulses that enable the chemotherapeutic drug to more effectively destroy the tumor cells. Electrochemotherapy can be used for treating deep-seated metastases (e.g. in the liver, bone, brain, soft tissue using variable-geometry long-needle electrodes. To treat deep-seated tumors, patient-specific treatment planning of the electroporation-based treatment is required. Treatment planning is based on generating a 3D model of the organ and target tissue subject to electroporation (i.e. tumor nodules. The generation of the 3D model is done by segmentation algorithms. We implemented and evaluated three automatic liver segmentation algorithms: region growing, adaptive threshold, and active contours (snakes. The algorithms were optimized using a seven-case dataset manually segmented by the radiologist as a training set, and finally validated using an additional four-case dataset that was previously not included in the optimization dataset. The presented results demonstrate that patient's medical images that were not included in the training set can be successfully segmented using our three algorithms. Besides electroporation-based treatments, these algorithms can be used in applications where automatic liver segmentation is required.

  2. An automatic system for segmentation, matching, anatomical labeling and measurement of airways from CT images

    DEFF Research Database (Denmark)

    Petersen, Jens; Feragen, Aasa; Lo, P.;

    Purpose: Assessing airway dimensions and attenuation from CT images is useful in the study of diseases affecting the airways such as Chronic Obstructive Pulmonary Disease (COPD). Measurements can be compared between patients and over time if specific airway segments can be identified. However...... differences. Results: The segmentation method has been used on 9711 low dose CT images from the Danish Lung Cancer Screening Trial (DLCST). Manual inspection of thumbnail images revealed gross errors in a total of 44 images. 29 were missing branches at the lobar level and only 15 had obvious false positives...... extracted perpendicularly to and in random positions of the centerline in 7 subjects. Results show an average Dice's coefficient of 89%. The COPD gene phantom was scanned with the DLCST protocol and all interior and exterior diameters were estimated within 0.3 mm of their actual values. Limiting...

  3. Automatic Segmentation of Colon in 3D CT Images and Removal of Opacified Fluid Using Cascade Feed Forward Neural Network

    Directory of Open Access Journals (Sweden)

    K. Gayathri Devi

    2015-01-01

    Full Text Available Purpose. Colon segmentation is an essential step in the development of computer-aided diagnosis systems based on computed tomography (CT images. The requirement for the detection of the polyps which lie on the walls of the colon is much needed in the field of medical imaging for diagnosis of colorectal cancer. Methods. The proposed work is focused on designing an efficient automatic colon segmentation algorithm from abdominal slices consisting of colons, partial volume effect, bowels, and lungs. The challenge lies in determining the exact colon enhanced with partial volume effect of the slice. In this work, adaptive thresholding technique is proposed for the segmentation of air packets, machine learning based cascade feed forward neural network enhanced with boundary detection algorithms are used which differentiate the segments of the lung and the fluids which are sediment at the side wall of colon and by rejecting bowels based on the slice difference removal method. The proposed neural network method is trained with Bayesian regulation algorithm to determine the partial volume effect. Results. Experiment was conducted on CT database images which results in 98% accuracy and minimal error rate. Conclusions. The main contribution of this work is the exploitation of neural network algorithm for removal of opacified fluid to attain desired colon segmentation result.

  4. X-ray CT image segmentation: automatic sandwich structure layer separation using reduced dimension Hough transformation

    Science.gov (United States)

    Xu, J.; Liu, T.; Kakarala, R.; Yin, X. M.

    2010-03-01

    Many structures in aerospace, semiconductor and precision engineering are multi-layer in nature. Examples include Low Temperature Co-Fire Ceramic (LTCC), PCBA, stacked IC, Through-Silicon-Via and composite materials for aircraft wings. Segmentation of each internal layer in any orientation is essential for layer alignment as well as delamination, disbond and warpage analysis. In this paper we propose a RDHT (Reduced Dimension Hough Transformation) for automatic layer detection. Instead of segmenting internal surfaces at voxel level, correlation based edge operator is applied to extract features in 3D space whereby the likelihood of any planar structure is associated with the number of features on a specific plane. We use Randomized Hough Transform to map 3D features in three one dimensional accumulators plus one verification accumulator to reduce Hough space dimension. The RDHT has been successfully applied to various objects to reveal internal planar structures. For a CT result with a 512×512×512 cube, the feature detection takes 30 seconds and the subsequent layer separation takes 12 seconds (laptop with Intel dual core 1.6G). We demonstrate that the algorithm can segment all 16 layers of a stacked IC with an accuracy of 0.5 voxel.

  5. Automatic segmentation and classification of gestational sac based on mean sac diameter using medical ultrasound image

    Science.gov (United States)

    Khazendar, Shan; Farren, Jessica; Al-Assam, Hisham; Sayasneh, Ahmed; Du, Hongbo; Bourne, Tom; Jassim, Sabah A.

    2014-05-01

    Ultrasound is an effective multipurpose imaging modality that has been widely used for monitoring and diagnosing early pregnancy events. Technology developments coupled with wide public acceptance has made ultrasound an ideal tool for better understanding and diagnosing of early pregnancy. The first measurable signs of an early pregnancy are the geometric characteristics of the Gestational Sac (GS). Currently, the size of the GS is manually estimated from ultrasound images. The manual measurement involves multiple subjective decisions, in which dimensions are taken in three planes to establish what is known as Mean Sac Diameter (MSD). The manual measurement results in inter- and intra-observer variations, which may lead to difficulties in diagnosis. This paper proposes a fully automated diagnosis solution to accurately identify miscarriage cases in the first trimester of pregnancy based on automatic quantification of the MSD. Our study shows a strong positive correlation between the manual and the automatic MSD estimations. Our experimental results based on a dataset of 68 ultrasound images illustrate the effectiveness of the proposed scheme in identifying early miscarriage cases with classification accuracies comparable with those of domain experts using K nearest neighbor classifier on automatically estimated MSDs.

  6. Automatic choroid cells segmentation and counting based on approximate convexity and concavity of chain code in fluorescence microscopic image

    Science.gov (United States)

    Lu, Weihua; Chen, Xinjian; Zhu, Weifang; Yang, Lei; Cao, Zhaoyuan; Chen, Haoyu

    2015-03-01

    In this paper, we proposed a method based on the Freeman chain code to segment and count rhesus choroid-retinal vascular endothelial cells (RF/6A) automatically for fluorescence microscopy images. The proposed method consists of four main steps. First, a threshold filter and morphological transform were applied to reduce the noise. Second, the boundary information was used to generate the Freeman chain codes. Third, the concave points were found based on the relationship between the difference of the chain code and the curvature. Finally, cells segmentation and counting were completed based on the characteristics of the number of the concave points, the area and shape of the cells. The proposed method was tested on 100 fluorescence microscopic cell images, and the average true positive rate (TPR) is 98.13% and the average false positive rate (FPR) is 4.47%, respectively. The preliminary results showed the feasibility and efficiency of the proposed method.

  7. Automatic 3D segmentation of the prostate on magnetic resonance images for radiotherapy planning

    OpenAIRE

    Alvarez Jiménez, Charlems

    2015-01-01

    Abstract. Accurate segmentation of the prostate, the seminal vesicles, the bladder and the rectum is a crucial step for planning radiotherapy (RT) procedures. Modern radiotherapy protocols have included the delineation of the pelvic organs in magnetic resonance images (MRI), as the guide to the therapeutic beam irradiation over the target organ. However, this task is highly inter and intra-expert variable and may take about 20 minutes per patient, even for trained experts, constituting an imp...

  8. Automatic segmentation of different-sized leukoaraiosis regions in brain MR images

    Science.gov (United States)

    Uchiyama, Yoshikazu; Kunieda, Takuya; Hara, Takeshi; Fujita, Hiroshi; Ando, Hiromichi; Yamakawa, Hiroyasu; Asano, Takahiko; Kato, Hiroki; Iwama, Toru; Kanematsu, Masayuki; Hoshi, Hiroaki

    2008-03-01

    Cerebrovascular diseases are the third leading cause of death in Japan. Therefore, a screening system for the early detection of asymptomatic brain diseases is widely used. In this screening system, leukoaraiosis is often detected in magnetic resonance (MR) images. The quantitative analysis of leukoaraiosis is important because its presence and extension is associated with an increased risk of severe stroke. However, thus far, the diagnosis of leukoaraiosis has generally been limited to subjective judgments by radiologists. Therefore, the purpose of this study was to develop a computerized method for the segmentation of leukoaraiosis, and provide an objective measurement of the lesion volume. Our database comprised of T1- and T2-weighted images obtained from 73 patients. The locations of leukoaraiosis regions were determined by an experienced neuroradiologist. We first segment cerebral parenchymal regions in T1-weighted images by using a region growing technique. For determining the initial candidate regions for leukoaraiosis, the k-means clustering of pixel values in the T1- and T2-weighted images was applied to the segmented cerebral region. For the elimination of false positives (FPs), we determined features such as the location, size, and circularity from each of the initial candidates. Finally, rule-based schemes and a quadratic discriminant analysis with these features were employed for distinguishing between the leukoaraiosis regions and the FPs. The results indicated that the sensitivity for the detection of leukoaraiosis was 100% with 5.84 FPs per image. Our computerized scheme can be useful in assisting radiologists for the quantitative analysis of leukoaraiosis in T1- and T2-weighted images.

  9. Automatic Airway Deletion in Pulmonary Segmentation

    Institute of Scientific and Technical Information of China (English)

    WANG Ping; ZHUANG Tian-ge

    2005-01-01

    A method of removing the airway from pulmonary segmentation image was proposed. This method firstly segments the image into several separate regions based on the optimum threshold and morphological operator,and then each region is labeled and noted with its mean grayscale. Therefore, most of the non-lung regions can be removed according to the tissue's Hounsfield units (HU) and the imaging modality. Finally, the airway region is recognized and deleted automatically through using the priori information of its HU and size. This proposed method is tested using several clinical images, yielding satisfying results.

  10. Automatic segmentation of magnetic resonance images of the trans-femoral residual limb.

    Science.gov (United States)

    Douglas, T S; Solomonidis, S E; Lee, V S; Spence, W D; Sandham, W A; Hadley, D M

    1998-12-01

    An automatic algorithm for the extraction of the skin and bone boundaries from axial magnetic resonance images of the residual limb of trans-femoral amputees is presented. The method makes use of K-means clustering and mathematical morphology. Statistical analysis of the results indicates that the computer-generated boundaries compare favourably to those drawn by human observers. The boundaries may be used in biomechanical modelling of the interaction between the residual limb and the prosthetic socket. The limb/socket interface determines the quality of prosthetic fit, therefore knowledge of this interface is important for the improvement of socket design in order to achieve patient comfort and mobility. PMID:10223645

  11. Automatic segmentation and 3D reconstruction of intravascular ultrasound images for a fast preliminar evaluation of vessel pathologies.

    Science.gov (United States)

    Sanz-Requena, Roberto; Moratal, David; García-Sánchez, Diego Ramón; Bodí, Vicente; Rieta, José Joaquín; Sanchis, Juan Manuel

    2007-03-01

    Intravascular ultrasound (IVUS) imaging is used along with X-ray coronary angiography to detect vessel pathologies. Manual analysis of IVUS images is slow and time-consuming and it is not feasible for clinical purposes. A semi-automated method is proposed to generate 3D reconstructions from IVUS video sequences, so that a fast diagnose can be easily done, quantifying plaque length and severity as well as plaque volume of the vessels under study. The methodology described in this work has four steps: a pre-processing of IVUS images, a segmentation of media-adventitia contour, a detection of intima and plaque and a 3D reconstruction of the vessel. Preprocessing is intended to remove noise from the images without blurring the edges. Segmentation of media-adventitia contour is achieved using active contours (snakes). In particular, we use the gradient vector flow (GVF) as external force for the snakes. The detection of lumen border is obtained taking into account gray-level information of the inner part of the previously detected contours. A knowledge-based approach is used to determine which level of gray corresponds statistically to the different regions of interest: intima, plaque and lumen. The catheter region is automatically discarded. An estimate of plaque type is also given. Finally, 3D reconstruction of all detected regions is made. The suitability of this methodology has been verified for the analysis and visualization of plaque length, stenosis severity, automatic detection of the most problematic regions, calculus of plaque volumes and a preliminary estimation of plaque type obtaining for automatic measures of lumen and vessel area an average error smaller than 1mm(2) (equivalent aproximately to 10% of the average measure), for calculus of plaque and lumen volume errors smaller than 0.5mm(3) (equivalent approximately to 20% of the average measure) and for plaque type estimates a mismatch of less than 8% in the analysed frames. PMID:17215103

  12. Development of a semi-automatic segmentation method for retinal OCT images tested in patients with diabetic macular edema.

    Directory of Open Access Journals (Sweden)

    Yijun Huang

    Full Text Available PURPOSE: To develop EdgeSelect, a semi-automatic method for the segmentation of retinal layers in spectral domain optical coherence tomography images, and to compare the segmentation results with a manual method. METHODS: SD-OCT (Heidelberg Spectralis scans of 28 eyes (24 patients with diabetic macular edema and 4 normal subjects were imported into a customized MATLAB application, and were manually segmented by three graders at the layers corresponding to the inner limiting membrane (ILM, the inner segment/ellipsoid interface (ISe, the retinal/retinal pigment epithelium interface (RPE, and the Bruch's membrane (BM. The scans were then segmented independently by the same graders using EdgeSelect, a semi-automated method allowing the graders to guide/correct the layer segmentation interactively. The inter-grader reproducibility and agreement in locating the layer positions between the manual and EdgeSelect methods were assessed and compared using the Wilcoxon signed rank test. RESULTS: The inter-grader reproducibility using the EdgeSelect method for retinal layers varied from 0.15 to 1.21 µm, smaller than those using the manual method (3.36-6.43 µm. The Wilcoxon test indicated the EdgeSelect method had significantly better reproducibility than the manual method. The agreement between the manual and EdgeSelect methods in locating retinal layers ranged from 0.08 to 1.32 µm. There were small differences between the two methods in locating the ILM (p = 0.012 and BM layers (p<0.001, but these were statistically indistinguishable in locating the ISe (p = 0.896 and RPE layers (p = 0.771. CONCLUSIONS: The EdgeSelect method resulted in better reproducibility and good agreement with a manual method in a set of eyes of normal subjects and with retinal disease, suggesting that this approach is feasible for OCT image analysis in clinical trials.

  13. Semi-automatic knee cartilage segmentation

    Science.gov (United States)

    Dam, Erik B.; Folkesson, Jenny; Pettersen, Paola C.; Christiansen, Claus

    2006-03-01

    Osteo-Arthritis (OA) is a very common age-related cause of pain and reduced range of motion. A central effect of OA is wear-down of the articular cartilage that otherwise ensures smooth joint motion. Quantification of the cartilage breakdown is central in monitoring disease progression and therefore cartilage segmentation is required. Recent advances allow automatic cartilage segmentation with high accuracy in most cases. However, the automatic methods still fail in some problematic cases. For clinical studies, even if a few failing cases will be averaged out in the overall results, this reduces the mean accuracy and precision and thereby necessitates larger/longer studies. Since the severe OA cases are often most problematic for the automatic methods, there is even a risk that the quantification will introduce a bias in the results. Therefore, interactive inspection and correction of these problematic cases is desirable. For diagnosis on individuals, this is even more crucial since the diagnosis will otherwise simply fail. We introduce and evaluate a semi-automatic cartilage segmentation method combining an automatic pre-segmentation with an interactive step that allows inspection and correction. The automatic step consists of voxel classification based on supervised learning. The interactive step combines a watershed transformation of the original scan with the posterior probability map from the classification step at sub-voxel precision. We evaluate the method for the task of segmenting the tibial cartilage sheet from low-field magnetic resonance imaging (MRI) of knees. The evaluation shows that the combined method allows accurate and highly reproducible correction of the segmentation of even the worst cases in approximately ten minutes of interaction.

  14. Automatic segmentation of male pelvic anatomy on computed tomography images: a comparison with multiple observers in the context of a multicentre clinical trial

    International Nuclear Information System (INIS)

    This study investigates the variation in segmentation of several pelvic anatomical structures on computed tomography (CT) between multiple observers and a commercial automatic segmentation method, in the context of quality assurance and evaluation during a multicentre clinical trial. CT scans of two prostate cancer patients (‘benchmarking cases’), one high risk (HR) and one intermediate risk (IR), were sent to multiple radiotherapy centres for segmentation of prostate, rectum and bladder structures according to the TROG 03.04 “RADAR” trial protocol definitions. The same structures were automatically segmented using iPlan software for the same two patients, allowing structures defined by automatic segmentation to be quantitatively compared with those defined by multiple observers. A sample of twenty trial patient datasets were also used to automatically generate anatomical structures for quantitative comparison with structures defined by individual observers for the same datasets. There was considerable agreement amongst all observers and automatic segmentation of the benchmarking cases for bladder (mean spatial variations < 0.4 cm across the majority of image slices). Although there was some variation in interpretation of the superior-inferior (cranio-caudal) extent of rectum, human-observer contours were typically within a mean 0.6 cm of automatically-defined contours. Prostate structures were more consistent for the HR case than the IR case with all human observers segmenting a prostate with considerably more volume (mean +113.3%) than that automatically segmented. Similar results were seen across the twenty sample datasets, with disagreement between iPlan and observers dominant at the prostatic apex and superior part of the rectum, which is consistent with observations made during quality assurance reviews during the trial. This study has demonstrated quantitative analysis for comparison of multi-observer segmentation studies. For automatic segmentation

  15. Automatic Speech Segmentation Based on HMM

    OpenAIRE

    M. Kroul

    2007-01-01

    This contribution deals with the problem of automatic phoneme segmentation using HMMs. Automatization of speech segmentation task is important for applications, where large amount of data is needed to process, so manual segmentation is out of the question. In this paper we focus on automatic segmentation of recordings, which will be used for triphone synthesis unit database creation. For speech synthesis, the speech unit quality is a crucial aspect, so the maximal accuracy in segmentation is ...

  16. Performance evaluation of an automatic segmentation method of cerebral arteries in MRA images by use of a large image database

    Science.gov (United States)

    Uchiyama, Yoshikazu; Asano, Tatsunori; Hara, Takeshi; Fujita, Hiroshi; Kinosada, Yasutomi; Asano, Takahiko; Kato, Hiroki; Kanematsu, Masayuki; Hoshi, Hiroaki; Iwama, Toru

    2009-02-01

    The detection of cerebrovascular diseases such as unruptured aneurysm, stenosis, and occlusion is a major application of magnetic resonance angiography (MRA). However, their accurate detection is often difficult for radiologists. Therefore, several computer-aided diagnosis (CAD) schemes have been developed in order to assist radiologists with image interpretation. The purpose of this study was to develop a computerized method for segmenting cerebral arteries, which is an essential component of CAD schemes. For the segmentation of vessel regions, we first used a gray level transformation to calibrate voxel values. To adjust for variations in the positioning of patients, registration was subsequently employed to maximize the overlapping of the vessel regions in the target image and reference image. The vessel regions were then segmented from the background using gray-level thresholding and region growing techniques. Finally, rule-based schemes with features such as size, shape, and anatomical location were employed to distinguish between vessel regions and false positives. Our method was applied to 854 clinical cases obtained from two different hospitals. The segmentation of cerebral arteries in 97.1%(829/854) of the MRA studies was attained as an acceptable result. Therefore, our computerized method would be useful in CAD schemes for the detection of cerebrovascular diseases in MRA images.

  17. An automatic segmentation system of acetabulum in sequential CT images for the personalized artificial femoral head design.

    Science.gov (United States)

    Liu, Bin; Zhang, Hui; Hua, Shungang; Jiang, Qianfeng; Huang, Rui; Liu, Wenpeng; Zhang, Shuo; Zhang, Bingbing; Yue, Zongge

    2016-04-01

    This paper describes an automatic and accurate segmentation method to extract the acetabulum tissue from sequential CT images. The hip joint consists of acetabulum and femoral head. In the personalized femoral head prosthesis designing by reverse engineering technology, obtaining the accurate acetabulum shape is the most important task. However, due to the necrotic femoral head's complex shape and the extremely narrow inter-bone region, obtaining the accurate acetabulum shape remains a challenging work. In this paper, we overcame these difficulties and developed an automatic segmentation method. First, we obtain the rough contour of the femoral head by utilizing the constraints of the great trochanter and the shape of femoral head in the initial slice. Second, we refine the rough contour by an orthogonal line edge detection approach and obtain a refined contour which will be used as the initial contour of the snake algorithm. Then, the snake algorithm is performed slice by slice upwards and downwards to generate the adjacent contours. During this process, the contour of the femoral head in a segmented slice is used as the initial contour of the next unsegmented slice. Finally, we can obtain the accurate sequential contours of the acetabulum by removing the femoral head and the femoral regions. And the 3D models of the acetabulum can be obtained correspondingly. The experimental result shows that the 3D models obtained by the proposed method are accurate and satisfactory. On this condition, we can reconstruct the personalized femoral head 3D models and design the personalized femoral head prosthesis. PMID:26803563

  18. Microscopic Halftone Image Segmentation

    Institute of Scientific and Technical Information of China (English)

    WANG Yong-gang; YANG Jie; DING Yong-sheng

    2004-01-01

    Microscopic halftone image recognition and analysis can provide quantitative evidence for printing quality control and fault diagnosis of printing devices, while halftone image segmentation is one of the significant steps during the procedure. Automatic segmentation on microscopic dots by the aid of the Fuzzy C-Means (FCM) method that takes account of the fuzziness of halftone image and utilizes its color information adequately is realized. Then some examples show the technique effective and simple with better performance of noise immunity than some usual methods. In addition, the segmentation results obtained by the FCM in different color spaces are compared, which indicates that the method using the FCM in the f1f2f3 color space is superior to the rest.

  19. An Automatic Indirect Immunofluorescence Cell Segmentation System

    Directory of Open Access Journals (Sweden)

    Yung-Kuan Chan

    2014-01-01

    Full Text Available Indirect immunofluorescence (IIF with HEp-2 cells has been used for the detection of antinuclear autoantibodies (ANA in systemic autoimmune diseases. The ANA testing allows us to scan a broad range of autoantibody entities and to describe them by distinct fluorescence patterns. Automatic inspection for fluorescence patterns in an IIF image can assist physicians, without relevant experience, in making correct diagnosis. How to segment the cells from an IIF image is essential in developing an automatic inspection system for ANA testing. This paper focuses on the cell detection and segmentation; an efficient method is proposed for automatically detecting the cells with fluorescence pattern in an IIF image. Cell culture is a process in which cells grow under control. Cell counting technology plays an important role in measuring the cell density in a culture tank. Moreover, assessing medium suitability, determining population doubling times, and monitoring cell growth in cultures all require a means of quantifying cell population. The proposed method also can be used to count the cells from an image taken under a fluorescence microscope.

  20. An Automatic Framework for Segmentation and Digital Inpainting of 2D Frontal Face Images

    NARCIS (Netherlands)

    Sobiecki, A.; Giraldi, G. A.; Neves, L. A. P.; Thomaz, C. E.

    2012-01-01

    Nowadays applications that use face images as input for people identification have been very common. In general, the input image must be preprocessed in order to fit some normalization and quality criteria. In this paper, we propose a computational framework composed of digital image quality computa

  1. Spatial context learning approach to automatic segmentation of pleural effusion in chest computed tomography images

    Science.gov (United States)

    Mansoor, Awais; Casas, Rafael; Linguraru, Marius G.

    2016-03-01

    Pleural effusion is an abnormal collection of fluid within the pleural cavity. Excessive accumulation of pleural fluid is an important bio-marker for various illnesses, including congestive heart failure, pneumonia, metastatic cancer, and pulmonary embolism. Quantification of pleural effusion can be indicative of the progression of disease as well as the effectiveness of any treatment being administered. Quantification, however, is challenging due to unpredictable amounts and density of fluid, complex topology of the pleural cavity, and the similarity in texture and intensity of pleural fluid to the surrounding tissues in computed tomography (CT) scans. Herein, we present an automated method for the segmentation of pleural effusion in CT scans based on spatial context information. The method consists of two stages: first, a probabilistic pleural effusion map is created using multi-atlas segmentation. The probabilistic map assigns a priori probabilities to the presence of pleural uid at every location in the CT scan. Second, a statistical pattern classification approach is designed to annotate pleural regions using local descriptors based on a priori probabilities, geometrical, and spatial features. Thirty seven CT scans from a diverse patient population containing confirmed cases of minimal to severe amounts of pleural effusion were used to validate the proposed segmentation method. An average Dice coefficient of 0.82685 and Hausdorff distance of 16.2155 mm was obtained.

  2. Automatic 2D segmentation of airways in thorax computed tomography images; Segmentacao automatica 2D de vias aereas em imagens de tomografia computadorizada do torax

    Energy Technology Data Exchange (ETDEWEB)

    Cavalcante, Tarique da Silveira; Cortez, Paulo Cesar; Almeida, Thomaz Maia de, E-mail: tarique@lesc.ufc.br [Universidade Federal do Ceara (UFC), Fortaleza, CE (Brazil). Dept. de Engenharia de Teleinformatica; Felix, John Hebert da Silva [Universidade da Integracao Internacional da Lusofonia Afro-Brasileira (UNILAB), Redencao, CE (Brazil). Departamento de Energias; Holanda, Marcelo Alcantara [Universidade Federal do Ceara (UFC), Fortaleza, CE (Brazil). Fac. de Medicina

    2013-07-01

    Introduction: much of the world population is affected by pulmonary diseases, such as the bronchial asthma, bronchitis and bronchiectasis. The bronchial diagnosis is based on the airways state. In this sense, the automatic segmentation of the airways in Computed Tomography (CT) scans is a critical step in the aid to diagnosis of these diseases. Methods: this paper evaluates algorithms for airway automatic segmentation, using Neural Network Multilayer Perceptron (MLP) and Lung Densities Analysis (LDA) for detecting airways, along with Region Growing (RG), Active Contour Method (ACM) Balloon and Topology Adaptive to segment them. Results: we obtained results in three stages: comparative analysis of the detection algorithms MLP and LDA, with a gold standard acquired by three physicians with expertise in CT imaging of the chest; comparative analysis of segmentation algorithms ACM Balloon, ACM Topology Adaptive, MLP and RG; and evaluation of possible combinations between segmentation and detection algorithms, resulting in the complete method for automatic segmentation of the airways in 2D. Conclusion: the low incidence of false negative and the significant reduction of false positive, results in similarity coefficient and sensitivity exceeding 91% and 87% respectively, for a combination of algorithms with satisfactory segmentation quality. (author)

  3. First performance evaluation of software for automatic segmentation, labeling and reformation of anatomical aligned axial images of the thoracolumbar spine at CT

    International Nuclear Information System (INIS)

    Highlights: •Automatic segmentation and labeling of the thoracolumbar spine. •Automatically generated double-angulated and aligned axial images of spine segments. •High grade of accurateness for the symmetric depiction of anatomical structures. •Time-saving and may improve workflow in daily practice. -- Abstract: Objectives: To evaluate software for automatic segmentation, labeling and reformation of anatomical aligned axial images of the thoracolumbar spine on CT in terms of accuracy, potential for time savings and workflow improvement. Material and methods: 77 patients (28 women, 49 men, mean age 65.3 ± 14.4 years) with known or suspected spinal disorders (degenerative spine disease n = 32; disc herniation n = 36; traumatic vertebral fractures n = 9) underwent 64-slice MDCT with thin-slab reconstruction. Time for automatic labeling of the thoracolumbar spine and reconstruction of double-angulated axial images of the pathological vertebrae was compared with manually performed reconstruction of anatomical aligned axial images. Reformatted images of both reconstruction methods were assessed by two observers regarding accuracy of symmetric depiction of anatomical structures. Results: In 33 cases double-angulated axial images were created in 1 vertebra, in 28 cases in 2 vertebrae and in 16 cases in 3 vertebrae. Correct automatic labeling was achieved in 72 of 77 patients (93.5%). Errors could be manually corrected in 4 cases. Automatic labeling required 1 min in average. In cases where anatomical aligned axial images of 1 vertebra were created, reconstructions made by hand were significantly faster (p < 0.05). Automatic reconstruction was time-saving in cases of 2 and more vertebrae (p < 0.05). Both reconstruction methods revealed good image quality with excellent inter-observer agreement. Conclusion: The evaluated software for automatic labeling and anatomically aligned, double-angulated axial image reconstruction of the thoracolumbar spine on CT is time

  4. First performance evaluation of software for automatic segmentation, labeling and reformation of anatomical aligned axial images of the thoracolumbar spine at CT

    Energy Technology Data Exchange (ETDEWEB)

    Scholtz, Jan-Erik, E-mail: janerikscholtz@gmail.com; Wichmann, Julian L.; Kaup, Moritz; Fischer, Sebastian; Kerl, J. Matthias; Lehnert, Thomas; Vogl, Thomas J.; Bauer, Ralf W.

    2015-03-15

    Highlights: •Automatic segmentation and labeling of the thoracolumbar spine. •Automatically generated double-angulated and aligned axial images of spine segments. •High grade of accurateness for the symmetric depiction of anatomical structures. •Time-saving and may improve workflow in daily practice. -- Abstract: Objectives: To evaluate software for automatic segmentation, labeling and reformation of anatomical aligned axial images of the thoracolumbar spine on CT in terms of accuracy, potential for time savings and workflow improvement. Material and methods: 77 patients (28 women, 49 men, mean age 65.3 ± 14.4 years) with known or suspected spinal disorders (degenerative spine disease n = 32; disc herniation n = 36; traumatic vertebral fractures n = 9) underwent 64-slice MDCT with thin-slab reconstruction. Time for automatic labeling of the thoracolumbar spine and reconstruction of double-angulated axial images of the pathological vertebrae was compared with manually performed reconstruction of anatomical aligned axial images. Reformatted images of both reconstruction methods were assessed by two observers regarding accuracy of symmetric depiction of anatomical structures. Results: In 33 cases double-angulated axial images were created in 1 vertebra, in 28 cases in 2 vertebrae and in 16 cases in 3 vertebrae. Correct automatic labeling was achieved in 72 of 77 patients (93.5%). Errors could be manually corrected in 4 cases. Automatic labeling required 1 min in average. In cases where anatomical aligned axial images of 1 vertebra were created, reconstructions made by hand were significantly faster (p < 0.05). Automatic reconstruction was time-saving in cases of 2 and more vertebrae (p < 0.05). Both reconstruction methods revealed good image quality with excellent inter-observer agreement. Conclusion: The evaluated software for automatic labeling and anatomically aligned, double-angulated axial image reconstruction of the thoracolumbar spine on CT is time

  5. Automatic Segmentation of the Eye in 3D Magnetic Resonance Imaging: A Novel Statistical Shape Model for Treatment Planning of Retinoblastoma

    Energy Technology Data Exchange (ETDEWEB)

    Ciller, Carlos, E-mail: carlos.cillerruiz@unil.ch [Department of Radiology, Lausanne University Hospital and University of Lausanne, Lausanne (Switzerland); Ophthalmic Technology Group, ARTORG Center of the University of Bern, Bern (Switzerland); Centre d’Imagerie BioMédicale, University of Lausanne, Lausanne (Switzerland); De Zanet, Sandro I.; Rüegsegger, Michael B. [Ophthalmic Technology Group, ARTORG Center of the University of Bern, Bern (Switzerland); Department of Ophthalmology, Inselspital, Bern University Hospital, Bern (Switzerland); Pica, Alessia [Department of Radiation Oncology, Inselspital, Bern University Hospital, Bern (Switzerland); Sznitman, Raphael [Ophthalmic Technology Group, ARTORG Center of the University of Bern, Bern (Switzerland); Department of Ophthalmology, Inselspital, Bern University Hospital, Bern (Switzerland); Thiran, Jean-Philippe [Department of Radiology, Lausanne University Hospital and University of Lausanne, Lausanne (Switzerland); Signal Processing Laboratory, École Polytechnique Fédérale de Lausanne, Lausanne (Switzerland); Maeder, Philippe [Department of Radiology, Lausanne University Hospital and University of Lausanne, Lausanne (Switzerland); Munier, Francis L. [Unit of Pediatric Ocular Oncology, Jules Gonin Eye Hospital, Lausanne (Switzerland); Kowal, Jens H. [Ophthalmic Technology Group, ARTORG Center of the University of Bern, Bern (Switzerland); Department of Ophthalmology, Inselspital, Bern University Hospital, Bern (Switzerland); and others

    2015-07-15

    Purpose: Proper delineation of ocular anatomy in 3-dimensional (3D) imaging is a big challenge, particularly when developing treatment plans for ocular diseases. Magnetic resonance imaging (MRI) is presently used in clinical practice for diagnosis confirmation and treatment planning for treatment of retinoblastoma in infants, where it serves as a source of information, complementary to the fundus or ultrasonographic imaging. Here we present a framework to fully automatically segment the eye anatomy for MRI based on 3D active shape models (ASM), and we validate the results and present a proof of concept to automatically segment pathological eyes. Methods and Materials: Manual and automatic segmentation were performed in 24 images of healthy children's eyes (3.29 ± 2.15 years of age). Imaging was performed using a 3-T MRI scanner. The ASM consists of the lens, the vitreous humor, the sclera, and the cornea. The model was fitted by first automatically detecting the position of the eye center, the lens, and the optic nerve, and then aligning the model and fitting it to the patient. We validated our segmentation method by using a leave-one-out cross-validation. The segmentation results were evaluated by measuring the overlap, using the Dice similarity coefficient (DSC) and the mean distance error. Results: We obtained a DSC of 94.90 ± 2.12% for the sclera and the cornea, 94.72 ± 1.89% for the vitreous humor, and 85.16 ± 4.91% for the lens. The mean distance error was 0.26 ± 0.09 mm. The entire process took 14 seconds on average per eye. Conclusion: We provide a reliable and accurate tool that enables clinicians to automatically segment the sclera, the cornea, the vitreous humor, and the lens, using MRI. We additionally present a proof of concept for fully automatically segmenting eye pathology. This tool reduces the time needed for eye shape delineation and thus can help clinicians when planning eye treatment and confirming the extent of the tumor.

  6. Automatic Segmentation of the Eye in 3D Magnetic Resonance Imaging: A Novel Statistical Shape Model for Treatment Planning of Retinoblastoma

    International Nuclear Information System (INIS)

    Purpose: Proper delineation of ocular anatomy in 3-dimensional (3D) imaging is a big challenge, particularly when developing treatment plans for ocular diseases. Magnetic resonance imaging (MRI) is presently used in clinical practice for diagnosis confirmation and treatment planning for treatment of retinoblastoma in infants, where it serves as a source of information, complementary to the fundus or ultrasonographic imaging. Here we present a framework to fully automatically segment the eye anatomy for MRI based on 3D active shape models (ASM), and we validate the results and present a proof of concept to automatically segment pathological eyes. Methods and Materials: Manual and automatic segmentation were performed in 24 images of healthy children's eyes (3.29 ± 2.15 years of age). Imaging was performed using a 3-T MRI scanner. The ASM consists of the lens, the vitreous humor, the sclera, and the cornea. The model was fitted by first automatically detecting the position of the eye center, the lens, and the optic nerve, and then aligning the model and fitting it to the patient. We validated our segmentation method by using a leave-one-out cross-validation. The segmentation results were evaluated by measuring the overlap, using the Dice similarity coefficient (DSC) and the mean distance error. Results: We obtained a DSC of 94.90 ± 2.12% for the sclera and the cornea, 94.72 ± 1.89% for the vitreous humor, and 85.16 ± 4.91% for the lens. The mean distance error was 0.26 ± 0.09 mm. The entire process took 14 seconds on average per eye. Conclusion: We provide a reliable and accurate tool that enables clinicians to automatically segment the sclera, the cornea, the vitreous humor, and the lens, using MRI. We additionally present a proof of concept for fully automatically segmenting eye pathology. This tool reduces the time needed for eye shape delineation and thus can help clinicians when planning eye treatment and confirming the extent of the tumor

  7. SU-E-J-142: Performance Study of Automatic Image-Segmentation Algorithms in Motion Tracking Via MR-IGRT

    Energy Technology Data Exchange (ETDEWEB)

    Feng, Y; Olsen, J.; Parikh, P.; Noel, C; Wooten, H; Du, D; Mutic, S; Hu, Y [Washington University, St. Louis, MO (United States); Kawrakow, I; Dempsey, J [Washington University, St. Louis, MO (United States); ViewRay Co., Oakwood Village, OH (United States)

    2014-06-01

    Purpose: Evaluate commonly used segmentation algorithms on a commercially available real-time MR image guided radiotherapy (MR-IGRT) system (ViewRay), compare the strengths and weaknesses of each method, with the purpose of improving motion tracking for more accurate radiotherapy. Methods: MR motion images of bladder, kidney, duodenum, and liver tumor were acquired for three patients using a commercial on-board MR imaging system and an imaging protocol used during MR-IGRT. A series of 40 frames were selected for each case to cover at least 3 respiratory cycles. Thresholding, Canny edge detection, fuzzy k-means (FKM), k-harmonic means (KHM), and reaction-diffusion level set evolution (RD-LSE), along with the ViewRay treatment planning and delivery system (TPDS) were included in the comparisons. To evaluate the segmentation results, an expert manual contouring of the organs or tumor from a physician was used as a ground-truth. Metrics value of sensitivity, specificity, Jaccard similarity, and Dice coefficient were computed for comparison. Results: In the segmentation of single image frame, all methods successfully segmented the bladder and kidney, but only FKM, KHM and TPDS were able to segment the liver tumor and the duodenum. For segmenting motion image series, the TPDS method had the highest sensitivity, Jarccard, and Dice coefficients in segmenting bladder and kidney, while FKM and KHM had a slightly higher specificity. A similar pattern was observed when segmenting the liver tumor and the duodenum. The Canny method is not suitable for consistently segmenting motion frames in an automated process, while thresholding and RD-LSE cannot consistently segment a liver tumor and the duodenum. Conclusion: The study compared six different segmentation methods and showed the effectiveness of the ViewRay TPDS algorithm in segmenting motion images during MR-IGRT. Future studies include a selection of conformal segmentation methods based on image/organ-specific information

  8. Automatic detection of vascular bifurcations in segmented retinal images using trainable COSFIRE filters

    NARCIS (Netherlands)

    Azzopardi, George; Petkov, Nicolai

    2013-01-01

    Background: The vascular tree observed in a retinal fundus image can provide clues for cardiovascular diseases. Its analysis requires the identification of vessel bifurcations and crossovers. Methods: We use a set of trainable keypoint detectors that we call Combination Of Shifted Filter REsponses o

  9. A Multiscale Approach to Automatic Medical Image Segmentation Using Self—Organizing Map

    Institute of Scientific and Technical Information of China (English)

    马峰; 夏绍玮

    1998-01-01

    In this paper,a new medical image classification scheme is proposed using selforganizing map(SOM)combined with multiscale technique.It addresses the problem of the handling of edge pixels in the traditional multiscale SOM classifiers.First,to solve the difficulty in manual selection of edge pixels,a multiscale edge detection algorithm based on wavelet transform is proposed.Edge pixels detected are then selected into the training set as a new class and a multiscale SOM classifier is trained using this training set.In this new scheme,the SOM classifier can perform both the classification on the entire image and the edge detection simultaneously.On the other hand,the misclassification of the traditional multiscale SOM classifier in regions near edges is graeatly reduced and the correct classification is improved at the same time.

  10. Neuroanatomical automatic segmentation in brain cancer patients

    OpenAIRE

    D’Haese, P.; Niermann, K; Cmelak, A.; Donnelly, E.; Duay, V.; Li, R; Dawant, B.

    2003-01-01

    Conformally prescribed radiation therapy for brain cancer requires precisely defining the target treatment area, as well as delineating vital brain structures which must be spared from radiotoxicity. The current clinical practice of manually segmenting brain structures can be complex and exceedingly time consuming. Automatic computeraided segmentation methods have been proposed to increase efficiency and reproducibility in developing radiation treatment plans. Previous studies have establishe...

  11. Automatic segmentation of 4D cardiac MR images for extraction of ventricular chambers using a spatio-temporal approach

    Science.gov (United States)

    Atehortúa, Angélica; Zuluaga, Maria A.; Ourselin, Sébastien; Giraldo, Diana; Romero, Eduardo

    2016-03-01

    An accurate ventricular function quantification is important to support evaluation, diagnosis and prognosis of several cardiac pathologies. However, expert heart delineation, specifically for the right ventricle, is a time consuming task with high inter-and-intra observer variability. A fully automatic 3D+time heart segmentation framework is herein proposed for short-axis-cardiac MRI sequences. This approach estimates the heart using exclusively information from the sequence itself without tuning any parameters. The proposed framework uses a coarse-to-fine approach, which starts by localizing the heart via spatio-temporal analysis, followed by a segmentation of the basal heart that is then propagated to the apex by using a non-rigid-registration strategy. The obtained volume is then refined by estimating the ventricular muscle by locally searching a prior endocardium- pericardium intensity pattern. The proposed framework was applied to 48 patients datasets supplied by the organizers of the MICCAI 2012 Right Ventricle segmentation challenge. Results show the robustness, efficiency and competitiveness of the proposed method both in terms of accuracy and computational load.

  12. MEDICAL IMAGE SEGMENTATION

    Directory of Open Access Journals (Sweden)

    Madhavi Latha

    2010-07-01

    Full Text Available Image segmentation is an essential but critical component in low level vision image analysis, pattern recognition, and in robotic systems. It is one of the most difficult and challenging tasks in image processing which determines the quality of the final result of the image analysis. Image segmentation is the process of dividing an image into different regions such that each region is homogeneous. Various image segmentation algorithms are discussed. Some examples in different image formats are presented and overall results discussed and compared considering different parameters.

  13. A fully automatic, threshold-based segmentation method for the estimation of the Metabolic Tumor Volume from PET images: validation on 3D printed anthropomorphic oncological lesions

    Science.gov (United States)

    Gallivanone, F.; Interlenghi, M.; Canervari, C.; Castiglioni, I.

    2016-01-01

    18F-Fluorodeoxyglucose (18F-FDG) Positron Emission Tomography (PET) is a standard functional diagnostic technique to in vivo image cancer. Different quantitative paramters can be extracted from PET images and used as in vivo cancer biomarkers. Between PET biomarkers Metabolic Tumor Volume (MTV) has gained an important role in particular considering the development of patient-personalized radiotherapy treatment for non-homogeneous dose delivery. Different imaging processing methods have been developed to define MTV. The different proposed PET segmentation strategies were validated in ideal condition (e.g. in spherical objects with uniform radioactivity concentration), while the majority of cancer lesions doesn't fulfill these requirements. In this context, this work has a twofold objective: 1) to implement and optimize a fully automatic, threshold-based segmentation method for the estimation of MTV, feasible in clinical practice 2) to develop a strategy to obtain anthropomorphic phantoms, including non-spherical and non-uniform objects, miming realistic oncological patient conditions. The developed PET segmentation algorithm combines an automatic threshold-based algorithm for the definition of MTV and a k-means clustering algorithm for the estimation of the background. The method is based on parameters always available in clinical studies and was calibrated using NEMA IQ Phantom. Validation of the method was performed both in ideal (e.g. in spherical objects with uniform radioactivity concentration) and non-ideal (e.g. in non-spherical objects with a non-uniform radioactivity concentration) conditions. The strategy to obtain a phantom with synthetic realistic lesions (e.g. with irregular shape and a non-homogeneous uptake) consisted into the combined use of standard anthropomorphic phantoms commercially and irregular molds generated using 3D printer technology and filled with a radioactive chromatic alginate. The proposed segmentation algorithm was feasible in a

  14. Dictionary Based Image Segmentation

    DEFF Research Database (Denmark)

    Dahl, Anders Bjorholm; Dahl, Vedrana Andersen

    2015-01-01

    We propose a method for weakly supervised segmentation of natural images, which may contain both textured or non-textured regions. Our texture representation is based on a dictionary of image patches. To divide an image into separated regions with similar texture we use an implicit level sets...... in an efficient implementation of our segmentation method. We experimentally validated our approach on a number of natural as well as composed images....

  15. Atlas Based Automatic Liver 3D CT Image Segmentation%基于图谱的肝脏CT三维自动分割研究

    Institute of Scientific and Technical Information of China (English)

    刘伟; 贾富仓; 胡庆茂; 王俊

    2011-01-01

    目的 在肝脏外科手术或肝脏病理研究中,计算肝脏体积是重要步骤.由于肝脏外形复杂、临近组织灰度值与之接近等特点,肝脏的自动医学图像分割仍是医学图像处理中的难点之一.方法 本文采用图谱结合3D非刚性配准的方法,同时加入肝脏区域搜索算法,实现了鲁棒性较高的肝脏自动分割程序.首先,利用20套训练图像创建图谱,然后程序自动搜索肝脏区域,最后将图谱与待分割CT图像依次进行仿射配准和B样条配准.配准以后的图谱肝脏轮廓即可表示为目标肝脏分割轮廓,进而计算出肝脏体积.结果 评估结果显示,上述方法在肝脏体积误差方面表现出色,达到77分,但在局部(主要在肝脏尖端)出现较大的误差.结论 该方法分割临床肝脏CT图像具有可行性.%Objective Liver segmentation is an important step for the planning and navigation in liver surgery. Accurate, fast and robust automatic segmentation methods for clinical routine data are urgently needed. Because of the liver- s characteristics, such as the complexity of the external form, the similarity between the intensities of the liver and the tissues around it, automatic segmentation of the liver is one of the difficulties in medical image processing. Methods In this paper, 3D non-rigid registration from a refined atlas to liver CT images is used for segmentation. Firstly, twenty sets of training images are utilized to create an atlas. Then the liver initial region is searched and located automatically. After that threshold filtering is used to enhance the robustness of segmentation. Finally, this atlas is non-rigidly registered to the liver in CT images with affine and B-spline in succession. The registered segmentation of liver- s atlas represented the segmentation of the target liver, and then the liver volume was calculated. Results The evaluation show that the proposed method works well in liver volume error, with the 77 score

  16. Automatic segmentation of eight tissue classes in neonatal brain MRI.

    Directory of Open Access Journals (Sweden)

    Petronella Anbeek

    Full Text Available PURPOSE: Volumetric measurements of neonatal brain tissues may be used as a biomarker for later neurodevelopmental outcome. We propose an automatic method for probabilistic brain segmentation in neonatal MRIs. MATERIALS AND METHODS: In an IRB-approved study axial T1- and T2-weighted MR images were acquired at term-equivalent age for a preterm cohort of 108 neonates. A method for automatic probabilistic segmentation of the images into eight cerebral tissue classes was developed: cortical and central grey matter, unmyelinated and myelinated white matter, cerebrospinal fluid in the ventricles and in the extra cerebral space, brainstem and cerebellum. Segmentation is based on supervised pixel classification using intensity values and spatial positions of the image voxels. The method was trained and evaluated using leave-one-out experiments on seven images, for which an expert had set a reference standard manually. Subsequently, the method was applied to the remaining 101 scans, and the resulting segmentations were evaluated visually by three experts. Finally, volumes of the eight segmented tissue classes were determined for each patient. RESULTS: The Dice similarity coefficients of the segmented tissue classes, except myelinated white matter, ranged from 0.75 to 0.92. Myelinated white matter was difficult to segment and the achieved Dice coefficient was 0.47. Visual analysis of the results demonstrated accurate segmentations of the eight tissue classes. The probabilistic segmentation method produced volumes that compared favorably with the reference standard. CONCLUSION: The proposed method provides accurate segmentation of neonatal brain MR images into all given tissue classes, except myelinated white matter. This is the one of the first methods that distinguishes cerebrospinal fluid in the ventricles from cerebrospinal fluid in the extracerebral space. This method might be helpful in predicting neurodevelopmental outcome and useful for evaluating

  17. Automatic Segmentation of Eight Tissue Classes in Neonatal Brain MRI

    Science.gov (United States)

    Anbeek, Petronella; Išgum, Ivana; van Kooij, Britt J. M.; Mol, Christian P.; Kersbergen, Karina J.; Groenendaal, Floris; Viergever, Max A.; de Vries, Linda S.; Benders, Manon J. N. L.

    2013-01-01

    Purpose Volumetric measurements of neonatal brain tissues may be used as a biomarker for later neurodevelopmental outcome. We propose an automatic method for probabilistic brain segmentation in neonatal MRIs. Materials and Methods In an IRB-approved study axial T1- and T2-weighted MR images were acquired at term-equivalent age for a preterm cohort of 108 neonates. A method for automatic probabilistic segmentation of the images into eight cerebral tissue classes was developed: cortical and central grey matter, unmyelinated and myelinated white matter, cerebrospinal fluid in the ventricles and in the extra cerebral space, brainstem and cerebellum. Segmentation is based on supervised pixel classification using intensity values and spatial positions of the image voxels. The method was trained and evaluated using leave-one-out experiments on seven images, for which an expert had set a reference standard manually. Subsequently, the method was applied to the remaining 101 scans, and the resulting segmentations were evaluated visually by three experts. Finally, volumes of the eight segmented tissue classes were determined for each patient. Results The Dice similarity coefficients of the segmented tissue classes, except myelinated white matter, ranged from 0.75 to 0.92. Myelinated white matter was difficult to segment and the achieved Dice coefficient was 0.47. Visual analysis of the results demonstrated accurate segmentations of the eight tissue classes. The probabilistic segmentation method produced volumes that compared favorably with the reference standard. Conclusion The proposed method provides accurate segmentation of neonatal brain MR images into all given tissue classes, except myelinated white matter. This is the one of the first methods that distinguishes cerebrospinal fluid in the ventricles from cerebrospinal fluid in the extracerebral space. This method might be helpful in predicting neurodevelopmental outcome and useful for evaluating neuroprotective clinical

  18. Automatic Houses Detection with Color Aerial Images Based on Image Segmentation%彩色分割的航空影像房屋自动检测

    Institute of Scientific and Technical Information of China (English)

    何培培; 万幼川; 蒋朋睿; 高贤君; 秦家鑫

    2014-01-01

    In order to achieve housing automatic detection from high-resolution aerial imagery ,the present paper utilized the color information and spectral characteristics of the roofing material ,with the image segmentation theory ,to study the housing auto-matic detection method .Firstly ,This method proposed in this paper converts the RGB color space to HIS color space ,uses the characteristics of each component of the HIS color space and the spectral characteristics of the roofing material for image segmen-tation to isolate red tiled roofs and gray cement roof areas ,and gets the initial segmentation housing areas by using the marked watershed algorithm .Then ,region growing is conducted in the hue component with the seed segment sample by calculating the average hue in the marked region .Finally through the elimination of small spots and rectangular fitting process to obtain a clear outline of the housing area .Compared with the traditional pixel-based region segmentation algorithm ,the improved method pro-posed in this paper based on segment growing is in a one-dimensional color space to reduce the computation without human inter-vention ,and can cater to the geometry information of the neighborhood pixels so that the speed and accuracy of the algorithm has been significantly improved .A case study was conducted to apply the method proposed in this paper to high resolution aerial ima-ges ,and the experimental results demonstrate that this method has a high precision and rational robustness .%航空影像房屋提取方法的研究中大多基于灰度影像的区域生长算法,此类算法不仅忽略了不同材质的房屋所呈现的光谱特征对提取结果的影响,而且过于依赖种子像素的选取,处理效率不高。为了从高分辨率航空影像中实现房屋的自动检测,综合利用彩色信息与屋顶材料的光谱特征,采用影像分割原理,研究了房屋自动检测的方法。首先对RGB与HIS彩色空间进行

  19. Towards lung EIT image segmentation: automatic classification of lung tissue state from analysis of EIT monitored recruitment manoeuvres

    International Nuclear Information System (INIS)

    There is emerging evidence that the ventilation strategy used in acute lung injury (ALI) makes a significant difference in outcome and that an inappropriate ventilation strategy may produce ventilator-associated lung injury. Most harmful during mechanical ventilation are lung overdistension and lung collapse or atelectasis. Electrical impedance tomography (EIT) as a non-invasive imaging technology may be helpful to identify lung areas at risk. Currently, no automated method is routinely available to identify lung areas that are overdistended, collapsed or ventilated appropriately. We propose a fuzzy logic-based algorithm to analyse EIT images obtained during stepwise changes of mean airway pressures during mechanical ventilation. The algorithm is tested on data from two published studies of stepwise inflation–deflation manoeuvres in an animal model of ALI using conventional and high-frequency oscillatory ventilation. The timing of lung opening and collapsing on segmented images obtained using the algorithm during an inflation–deflation manoeuvre is in agreement with well-known effects of surfactant administration and changes in shunt fraction. While the performance of the algorithm has not been verified against a gold standard, we feel that it presents an important first step in tackling this challenging and important problem

  20. Skin Images Segmentation

    Directory of Open Access Journals (Sweden)

    Ali E. Zaart

    2010-01-01

    Full Text Available Problem statement: Image segmentation is a fundamental step in many applications of image processing. Skin cancer has been the most common of all new cancers detected each year. At early stage detection of skin cancer, simple and economic treatment can cure it mostly. An accurate segmentation of skin images can help the diagnosis to define well the region of the cancer. The principal approach of segmentation is based on thresholding (classification that is lied to the problem of the thresholds estimation. Approach: The objective of this study is to develop a method to segment the skin images based on a mixture of Beta distributions. We assume that the data in skin images can be modeled by a mixture of Beta distributions. We used an unsupervised learning technique with Beta distribution to estimate the statistical parameters of the data in skin image and then estimate the thresholds for segmentation. Results: The proposed method of skin images segmentation was implemented and tested on different skin images. We obtained very good results in comparing with the same techniques with Gamma distribution. Conclusion: The experiment showed that the proposed method obtained very good results but it requires more testing on different types of skin images.

  1. Color image segmentation

    Science.gov (United States)

    McCrae, Kimberley A.; Ruck, Dennis W.; Rogers, Steven K.; Oxley, Mark E.

    1994-03-01

    The most difficult stage of automated target recognition is segmentation. Current segmentation problems include faces and tactical targets; previous efforts to segment these objects have used intensity and motion cues. This paper develops a color preprocessing scheme to be used with the other segmentation techniques. A neural network is trained to identify the color of a desired object, eliminating all but that color from the scene. Gabor correlations and 2D wavelet transformations will be performed on stationary images; and 3D wavelet transforms on multispectral data will incorporate color and motion detection into the machine visual system. The paper will demonstrate that color and motion cues can enhance a computer segmentation system. Results from segmenting faces both from the AFIT data base and from video taped television are presented; results from tactical targets such as tanks and airplanes are also given. Color preprocessing is shown to greatly improve the segmentation in most cases.

  2. Optimal Elasticity cut-off value for discriminating Healthy to Pathological Fibrotic patients employing Fuzzy C-Means automatic segmentation in Liver Shear Wave Elastography images

    Science.gov (United States)

    Gatos, Ilias; Tsantis, Stavros; Skouroliakou, Aikaterini; Theotokas, Ioannis; Zoumpoulis, Pavlos S.; Kagadis, George C.

    2015-09-01

    The aim of the present study is to determine an optimal elasticity cut-off value for discriminating Healthy from Pathological fibrotic patients by means of Fuzzy C-Means automatic segmentation and maximum participation cluster mean value employment in Shear Wave Elastography (SWE) images. The clinical dataset comprised 32 subjects (16 Healthy and 16 histological or Fibroscan verified Chronic Liver Disease). An experienced Radiologist performed SWE measurement placing a region of interest (ROI) on each subject's right liver lobe providing a SWE image for each patient. Subsequently Fuzzy C-Means clustering was performed on every SWE image utilizing 5 clusters. Mean Stiffness value and pixels number of each cluster were calculated. The mean stiffness value feature of the cluster with maximum pixels number was then fed as input for ROC analysis. The selected Mean Stiffness value feature an Area Under the Curve (AUC) of 0.8633 with Optimum Cut-off value of 7.5 kPa with sensitivity and specificity values of 0.8438 and 0.875 and balanced accuracy of 0.8594. Examiner's classification measurements exhibited sensitivity, specificity and balanced accuracy value of 0.8125 with 7.1 kPa cutoff value. A new promising automatic algorithm was implemented with more objective criteria of defining optimum elasticity cut-off values for discriminating fibrosis stages for SWE. More subjects are needed in order to define if this algorithm is an objective tool to outperform manual ROI selection.

  3. UNSUPERVISED WOUND IMAGE SEGMENTATION

    Directory of Open Access Journals (Sweden)

    K. Sundeep Kumar

    2014-02-01

    Full Text Available The purpose of our research is to introduce two unique approaches for the unsupervised segmentation of wound images. The first method of segmentation is by using the texture of the image and is performed using the multi-channel filtering hypothesis for the processing of visual or optical data during the preliminary stages of the Human Visual System. We obtain the different channels from an image by filtering the image using a Gabor Filter Bank. The textural features are obtained from each filtered image and the final segmented image is acquired by reconstructing the original input image from these filtered images. The second method of segmentation was performed using parametric kernel graph cuts. Using a kernel function we transform the image data implicitly such that a piecewise constant model of the graph cut interpretation is now applicable. The objective function comprises of an original data term in order to assess the deviance of the transformed data from the initial input data within each partition. This method avoids sophisticated modelling of the input image data while availing of the computational advantages of graph cuts. By using a conventional kernel function, the energy minimization boils down to image partitioning via graph cut iterations and assessments of region parameters by means of fixed point calculations. The efficacy and flexibility of both the methods are established by carrying out investigations on real wound images.

  4. Segmentation of SAR images

    Science.gov (United States)

    Kwok, Ronald

    1989-01-01

    The statistical characteristics of image speckle are reviewed. Existing segmentation techniques that have been used for speckle filtering, edge detection, and texture extraction are sumamrized. The relative effectiveness of each technique is briefly discussed.

  5. Development of automatic surveillance of animal behaviour and welfare using image analysis and machine learned segmentation technique.

    Science.gov (United States)

    Nilsson, M; Herlin, A H; Ardö, H; Guzhva, O; Åström, K; Bergsten, C

    2015-11-01

    In this paper the feasibility to extract the proportion of pigs located in different areas of a pig pen by advanced image analysis technique is explored and discussed for possible applications. For example, pigs generally locate themselves in the wet dunging area at high ambient temperatures in order to avoid heat stress, as wetting the body surface is the major path to dissipate the heat by evaporation. Thus, the portion of pigs in the dunging area and resting area, respectively, could be used as an indicator of failure of controlling the climate in the pig environment as pigs are not supposed to rest in the dunging area. The computer vision methodology utilizes a learning based segmentation approach using several features extracted from the image. The learning based approach applied is based on extended state-of-the-art features in combination with a structured prediction framework based on a logistic regression solver using elastic net regularization. In addition, the method is able to produce a probability per pixel rather than form a hard decision. This overcomes some of the limitations found in a setup using grey-scale information only. The pig pen is a difficult imaging environment because of challenging lighting conditions like shadows, poor lighting and poor contrast between pig and background. In order to test practical conditions, a pen containing nine young pigs was filmed from a top view perspective by an Axis M3006 camera with a resolution of 640 × 480 in three, 10-min sessions under different lighting conditions. The results indicate that a learning based method improves, in comparison with greyscale methods, the possibility to reliable identify proportions of pigs in different areas of the pen. Pigs with a changed behaviour (location) in the pen may indicate changed climate conditions. Changed individual behaviour may also indicate inferior health or acute illness. PMID:26189971

  6. Generative models for image segmentation and representation

    OpenAIRE

    González Díaz, Iván

    2011-01-01

    This PhD. Thesis consists of two well differentiated parts, each of them focusing on one particular field of Computer Vision. The first part of the document considers the problem of automatically generating image segmentations in video sequences in the absence of any kind of semantic knowledge or labeled data. To that end, a blind spatio-temporal segmentation algorithm is proposed that fuses motion, color and spatial information to produce robust segmentations. The approach follows an iterati...

  7. Validation of a method of automatic segmentation for delineation of volumes in PET imaging for radiotherapy; Validacion de un metodo de segmentacion automatica para delineacion de volumenes en imagenes PET para radioterapia

    Energy Technology Data Exchange (ETDEWEB)

    Latorre Musoll, A.; Eudaldo Puell, T.; Ruiz Martinez, A.; Fernandez Leon, A.; Carrasco de Fez, P.; Jornet Sala, N.; Ribas Morales, M.

    2011-07-01

    Prior to clinical use of PET imaging for the delineation of BTV, has made a preliminary study on model, to validate the automatic segmentation tools based on thresholds of activity concentration, which implement both PET-CT equipment as the Eclipse planning system.

  8. Automatic Segmentation of Abdominal Adipose Tissue in MRI

    DEFF Research Database (Denmark)

    Mosbech, Thomas Hammershaimb; Pilgaard, Kasper; Vaag, Allan;

    2011-01-01

    This paper presents a method for automatically segmenting abdominal adipose tissue from 3-dimensional magnetic resonance images. We distinguish between three types of adipose tissue; visceral, deep subcutaneous and superficial subcutaneous. Images are pre-processed to remove the bias field effect...... are separated using deformable models, incorporating information from the clustering. The subcutaneous adipose tissue is subdivided into a deep and superficial part by means of dynamic programming applied to a spatial transformation of the image data. Regression analysis shows good correspondences between our...

  9. Toward automatic segmentation and quantification of tumor and stroma in whole-slide images of H and E stained rectal carcinomas

    Science.gov (United States)

    Geessink, Oscar G. F.; Baidoshvili, Alexi; Freling, Gerard; Klaase, Joost M.; Slump, Cornelis H.; van der Heijden, Ferdinand

    2015-03-01

    Visual estimation of tumor and stroma proportions in microscopy images yields a strong, Tumor-(lymph)Node- Metastasis (TNM) classification-independent predictor for patient survival in colorectal cancer. Therefore, it is also a potent (contra)indicator for adjuvant chemotherapy. However, quantification of tumor and stroma through visual estimation is highly subject to intra- and inter-observer variability. The aim of this study is to develop and clinically validate a method for objective quantification of tumor and stroma in standard hematoxylin and eosin (H and E) stained microscopy slides of rectal carcinomas. A tissue segmentation algorithm, based on supervised machine learning and pixel classification, was developed, trained and validated using histological slides that were prepared from surgically excised rectal carcinomas in patients who had not received neoadjuvant chemotherapy and/or radiotherapy. Whole-slide scanning was performed at 20× magnification. A total of 40 images (4 million pixels each) were extracted from 20 whole-slide images at sites showing various relative proportions of tumor and stroma. Experienced pathologists provided detailed annotations for every extracted image. The performance of the algorithm was evaluated using cross-validation by testing on 1 image at a time while using the other 39 images for training. The total classification error of the algorithm was 9.4% (SD = 3.2%). Compared to visual estimation by pathologists, the algorithm was 7.3 times (P = 0.033) more accurate in quantifying tissues, also showing 60% less variability. Automatic tissue quantification was shown to be both reliable and practicable. We ultimately intend to facilitate refined prognostic stratification of (colo)rectal cancer patients and enable better personalized treatment.

  10. Segmentation of elongated structures in medical images

    NARCIS (Netherlands)

    Staal, Jozef Johannes

    2004-01-01

    The research described in this thesis concerns the automatic detection, recognition and segmentation of elongated structures in medical images. For this purpose techniques have been developed to detect subdimensional pointsets (e.g. ridges, edges) in images of arbitrary dimension. These pointsets ar

  11. An Automatic Learning-Based Framework for Robust Nucleus Segmentation.

    Science.gov (United States)

    Xing, Fuyong; Xie, Yuanpu; Yang, Lin

    2016-02-01

    Computer-aided image analysis of histopathology specimens could potentially provide support for early detection and improved characterization of diseases such as brain tumor, pancreatic neuroendocrine tumor (NET), and breast cancer. Automated nucleus segmentation is a prerequisite for various quantitative analyses including automatic morphological feature computation. However, it remains to be a challenging problem due to the complex nature of histopathology images. In this paper, we propose a learning-based framework for robust and automatic nucleus segmentation with shape preservation. Given a nucleus image, it begins with a deep convolutional neural network (CNN) model to generate a probability map, on which an iterative region merging approach is performed for shape initializations. Next, a novel segmentation algorithm is exploited to separate individual nuclei combining a robust selection-based sparse shape model and a local repulsive deformable model. One of the significant benefits of the proposed framework is that it is applicable to different staining histopathology images. Due to the feature learning characteristic of the deep CNN and the high level shape prior modeling, the proposed method is general enough to perform well across multiple scenarios. We have tested the proposed algorithm on three large-scale pathology image datasets using a range of different tissue and stain preparations, and the comparative experiments with recent state of the arts demonstrate the superior performance of the proposed approach. PMID:26415167

  12. Image Series Segmentation and Improved MC Algorithm

    Institute of Scientific and Technical Information of China (English)

    WAN Wei-bing; SHI Peng-fei

    2008-01-01

    A semiautomatic segmentation method based on active contour is proposed for computed tomog-raphy (CT) image series. First, to get initial contour, one image slice was segmented exactly by C-V method based on Mumford-Shah model. Next, the computer will segment the nearby slice automatically using the snake model one by one. During segmenting of image slices, former slice boundary, as next slice initial con-tour, may cross over next slice real boundary and never return to right position. To avoid contour skipping over, the distance variance between two slices is evaluated by an threshold, which decides whether to initiate again. Moreover, a new improved marching cubes (MC) algorithm based on 2D images series segmentation boundary is given for 3D image reconstruction. Compared with the standard method, the proposed algorithm reduces detecting time and needs less storing memory. The effectiveness and capabilities of the algorithm were illustrated by experimental results.

  13. Image segmentation based on competitive learning

    Institute of Scientific and Technical Information of China (English)

    ZHANG Jing; LIU Qun; Baikunth Nath

    2004-01-01

    Image segment is a primary step in image analysis of unexploded ordnance (UXO) detection by ground p enetrating radar (GPR) sensor which is accompanied with a lot of noises and other elements that affect the recognition of real target size. In this paper we bring forward a new theory, that is, we look the weight sets as target vector sets which is the new cues in semi-automatic segmentation to form the final image segmentation. The experiment results show that the measure size of target with our method is much smaller than the size with other methods and close to the real size of target.

  14. Metric Learning for Hyperspectral Image Segmentation

    Science.gov (United States)

    Bue, Brian D.; Thompson, David R.; Gilmore, Martha S.; Castano, Rebecca

    2011-01-01

    We present a metric learning approach to improve the performance of unsupervised hyperspectral image segmentation. Unsupervised spatial segmentation can assist both user visualization and automatic recognition of surface features. Analysts can use spatially-continuous segments to decrease noise levels and/or localize feature boundaries. However, existing segmentation methods use tasks-agnostic measures of similarity. Here we learn task-specific similarity measures from training data, improving segment fidelity to classes of interest. Multiclass Linear Discriminate Analysis produces a linear transform that optimally separates a labeled set of training classes. The defines a distance metric that generalized to a new scenes, enabling graph-based segmentation that emphasizes key spectral features. We describe tests based on data from the Compact Reconnaissance Imaging Spectrometer (CRISM) in which learned metrics improve segment homogeneity with respect to mineralogical classes.

  15. Automatic Hair Segmentation in the Wild

    DEFF Research Database (Denmark)

    Julian, Pauline; Dehais, Christophe; Lauze, Francois Bernard;

    2010-01-01

    This paper presents an algorithm for segmenting the hair region in uncontrolled, real life conditions images. Our method is based on a simple statistical hair shape model representing the upper hair part. We detect this region by minimizing an energy which uses active shape and active contour....... The upper hair region then allows us to learn the hair appearance parameters (color and texture) for the image considered. Finally, those parameters drive a pixel-wise segmentation technique that yields the desired (complete) hair region. We demonstrate the applicability of our method on several real images....

  16. Statistical Images Segmentation

    Directory of Open Access Journals (Sweden)

    Corina Curilă

    2008-05-01

    Full Text Available This paper deals with fuzzy statistical imagesegmentation. We introduce a new hierarchicalMarkovian fuzzy hidden field model, which extends to thefuzzy case the classical Pérez and Heitz hard model. Twofuzzy statistical segmentation methods related with themodel proposed are defined in this paper and we show viasimulations that they are competitive with, in some casesthan, the classical Maximum Posterior Mode (MPMbased methods. Furthermore, they are faster, which willshould facilitate extensions to more than two hard classesin future work. In addition, the model proposed isapplicable to the multiscale segmentation andmultiresolution images fusion problems.

  17. A Geometric Approach For Fully Automatic Chromosome Segmentation

    CERN Document Server

    Minaee, Shervin; Khalaj, Babak Hossein

    2011-01-01

    Chromosome segmentation is a fundamental task in human chromosome analysis. Most of previous methods for separation between touching chromosomes require human intervention. In this paper, a geometry based method is used for automatic chromosome segmentation. This method can be divided into two phases. In the first phase, chromosome clusters are detected using three geometric criteria and in the second phase chromosome clusters are separated using a proper cut line. However, most earlier methods do not work well with chromosome clusters that contain more than two chromosomes. Our method, on the other hand, has a high efficiency in separation of chromosome clusters in such scenarios. Another advantage of the proposed method is that it can easily apply to any type of images such as binary images. This is due to the fact that the proposed scheme uses the geometric features of chromosomes which are independent of the type of images. The performance of the proposed scheme is demonstrated on a database containing to...

  18. Automatic segmentation of head and neck CT images for radiotherapy treatment planning using multiple atlases, statistical appearance models, and geodesic active contours

    Energy Technology Data Exchange (ETDEWEB)

    Fritscher, Karl D., E-mail: Karl.Fritscher@umit.at; Sharp, Gregory [Department for Radiation Oncology, Massachusetts General Hospital, Boston, Massachusetts 02114 (United States); Peroni, Marta [Paul Scherrer Institut, Villigen 5232 (Switzerland); Zaffino, Paolo; Spadea, Maria Francesca [Department of Experimental and Clinical Medicine, Magna Graecia University, Catanzaro 88100 (Italy); Schubert, Rainer [Institute for Biomedical Image Analysis, Private University of Health Sciences, Medical Informatics and Technology, Hall in Tirol 6060 (Austria)

    2014-05-15

    Purpose: Accurate delineation of organs at risk (OARs) is a precondition for intensity modulated radiation therapy. However, manual delineation of OARs is time consuming and prone to high interobserver variability. Because of image artifacts and low image contrast between different structures, however, the number of available approaches for autosegmentation of structures in the head-neck area is still rather low. In this project, a new approach for automated segmentation of head-neck CT images that combine the robustness of multiatlas-based segmentation with the flexibility of geodesic active contours and the prior knowledge provided by statistical appearance models is presented. Methods: The presented approach is using an atlas-based segmentation approach in combination with label fusion in order to initialize a segmentation pipeline that is based on using statistical appearance models and geodesic active contours. An anatomically correct approximation of the segmentation result provided by atlas-based segmentation acts as a starting point for an iterative refinement of this approximation. The final segmentation result is based on using model to image registration and geodesic active contours, which are mutually influencing each other. Results: 18 CT images in combination with manually segmented labels of parotid glands and brainstem were used in a leave-one-out cross validation scheme in order to evaluate the presented approach. For this purpose, 50 different statistical appearance models have been created and used for segmentation. Dice coefficient (DC), mean absolute distance and max. Hausdorff distance between the autosegmentation results and expert segmentations were calculated. An average Dice coefficient of DC = 0.81 (right parotid gland), DC = 0.84 (left parotid gland), and DC = 0.86 (brainstem) could be achieved. Conclusions: The presented framework provides accurate segmentation results for three important structures in the head neck area. Compared to a

  19. Edge Segment-Based Automatic Video Surveillance

    Directory of Open Access Journals (Sweden)

    Oksam Chae

    2007-12-01

    Full Text Available This paper presents a moving-object segmentation algorithm using edge information as segment. The proposed method is developed to address challenges due to variations in ambient lighting and background contents. We investigated the suitability of the proposed algorithm in comparison with the traditional-intensity-based as well as edge-pixel-based detection methods. In our method, edges are extracted from video frames and are represented as segments using an efficiently designed edge class. This representation helps to obtain the geometric information of edge in the case of edge matching and moving-object segmentation; and facilitates incorporating knowledge into edge segment during background modeling and motion tracking. An efficient approach for background initialization and robust method of edge matching is presented, to effectively reduce the risk of false alarm due to illumination change and camera motion while maintaining the high sensitivity to the presence of moving object. Detected moving edges are utilized along with watershed algorithm for extracting video object plane (VOP with more accurate boundary. Experiment results with real image sequence reflect that the proposed method is suitable for automated video surveillance applications in various monitoring systems.

  20. FISICO: Fast Image SegmentatIon COrrection

    Science.gov (United States)

    Valenzuela, Waldo; Ferguson, Stephen J.; Ignasiak, Dominika; Diserens, Gaëlle; Häni, Levin; Wiest, Roland; Vermathen, Peter; Boesch, Chris

    2016-01-01

    Background and Purpose In clinical diagnosis, medical image segmentation plays a key role in the analysis of pathological regions. Despite advances in automatic and semi-automatic segmentation techniques, time-effective correction tools are commonly needed to improve segmentation results. Therefore, these tools must provide faster corrections with a lower number of interactions, and a user-independent solution to reduce the time frame between image acquisition and diagnosis. Methods We present a new interactive method for correcting image segmentations. Our method provides 3D shape corrections through 2D interactions. This approach enables an intuitive and natural corrections of 3D segmentation results. The developed method has been implemented into a software tool and has been evaluated for the task of lumbar muscle and knee joint segmentations from MR images. Results Experimental results show that full segmentation corrections could be performed within an average correction time of 5.5±3.3 minutes and an average of 56.5±33.1 user interactions, while maintaining the quality of the final segmentation result within an average Dice coefficient of 0.92±0.02 for both anatomies. In addition, for users with different levels of expertise, our method yields a correction time and number of interaction decrease from 38±19.2 minutes to 6.4±4.3 minutes, and 339±157.1 to 67.7±39.6 interactions, respectively. PMID:27224061

  1. FISICO: Fast Image SegmentatIon COrrection.

    Directory of Open Access Journals (Sweden)

    Waldo Valenzuela

    Full Text Available In clinical diagnosis, medical image segmentation plays a key role in the analysis of pathological regions. Despite advances in automatic and semi-automatic segmentation techniques, time-effective correction tools are commonly needed to improve segmentation results. Therefore, these tools must provide faster corrections with a lower number of interactions, and a user-independent solution to reduce the time frame between image acquisition and diagnosis.We present a new interactive method for correcting image segmentations. Our method provides 3D shape corrections through 2D interactions. This approach enables an intuitive and natural corrections of 3D segmentation results. The developed method has been implemented into a software tool and has been evaluated for the task of lumbar muscle and knee joint segmentations from MR images.Experimental results show that full segmentation corrections could be performed within an average correction time of 5.5±3.3 minutes and an average of 56.5±33.1 user interactions, while maintaining the quality of the final segmentation result within an average Dice coefficient of 0.92±0.02 for both anatomies. In addition, for users with different levels of expertise, our method yields a correction time and number of interaction decrease from 38±19.2 minutes to 6.4±4.3 minutes, and 339±157.1 to 67.7±39.6 interactions, respectively.

  2. Automatic leukocyte nucleus segmentation by intuitionistic fuzzy divergence based thresholding.

    Science.gov (United States)

    Jati, Arindam; Singh, Garima; Mukherjee, Rashmi; Ghosh, Madhumala; Konar, Amit; Chakraborty, Chandan; Nagar, Atulya K

    2014-03-01

    The paper proposes a robust approach to automatic segmentation of leukocyte's nucleus from microscopic blood smear images under normal as well as noisy environment by employing a new exponential intuitionistic fuzzy divergence based thresholding technique. The algorithm minimizes the divergence between the actual image and the ideally thresholded image to search for the final threshold. A new divergence formula based on exponential intuitionistic fuzzy entropy has been proposed. Further, to increase its noise handling capacity, a neighborhood-based membership function for the image pixels has been designed. The proposed scheme has been applied on 110 normal and 54 leukemia (chronic myelogenous leukemia) affected blood samples. The nucleus segmentation results have been validated by three expert hematologists. The algorithm achieves an average segmentation accuracy of 98.52% in noise-free environment. It beats the competitor algorithms in terms of several other metrics. The proposed scheme with neighborhood based membership function outperforms the competitor algorithms in terms of segmentation accuracy under noisy environment. It achieves 93.90% and 94.93% accuracies for Speckle and Gaussian noises, respectively. The average area under the ROC curves comes out to be 0.9514 in noisy conditions, which proves the robustness of the proposed algorithm.

  3. Morphometric Atlas Selection for Automatic Brachial Plexus Segmentation

    Energy Technology Data Exchange (ETDEWEB)

    Van de Velde, Joris, E-mail: joris.vandevelde@ugent.be [Department of Anatomy, Ghent University, Ghent (Belgium); Department of Radiotherapy, Ghent University, Ghent (Belgium); Wouters, Johan [Department of Anatomy, Ghent University, Ghent (Belgium); Vercauteren, Tom; De Gersem, Werner; Duprez, Fréderic; De Neve, Wilfried [Department of Radiotherapy, Ghent University, Ghent (Belgium); Van Hoof, Tom [Department of Anatomy, Ghent University, Ghent (Belgium)

    2015-07-01

    Purpose: The purpose of this study was to determine the effects of atlas selection based on different morphometric parameters, on the accuracy of automatic brachial plexus (BP) segmentation for radiation therapy planning. The segmentation accuracy was measured by comparing all of the generated automatic segmentations with anatomically validated gold standard atlases developed using cadavers. Methods and Materials: Twelve cadaver computed tomography (CT) atlases (3 males, 9 females; mean age: 73 years) were included in the study. One atlas was selected to serve as a patient, and the other 11 atlases were registered separately onto this “patient” using deformable image registration. This procedure was repeated for every atlas as a patient. Next, the Dice and Jaccard similarity indices and inclusion index were calculated for every registered BP with the original gold standard BP. In parallel, differences in several morphometric parameters that may influence the BP segmentation accuracy were measured for the different atlases. Specific brachial plexus-related CT-visible bony points were used to define the morphometric parameters. Subsequently, correlations between the similarity indices and morphometric parameters were calculated. Results: A clear negative correlation between difference in protraction-retraction distance and the similarity indices was observed (mean Pearson correlation coefficient = −0.546). All of the other investigated Pearson correlation coefficients were weak. Conclusions: Differences in the shoulder protraction-retraction position between the atlas and the patient during planning CT influence the BP autosegmentation accuracy. A greater difference in the protraction-retraction distance between the atlas and the patient reduces the accuracy of the BP automatic segmentation result.

  4. Segmentation of moving images by the human visual system.

    Science.gov (United States)

    Chantelau, K

    1997-08-01

    New segments appearing in an image sequence or spontaneously accelerated segments are band limited by the visual system due to a nonperfect tracking of these segments by eye movements. In spite of this band limitation and acceleration of segments, a coarse segmentation (initial segmentation phase) can be performed by the visual system. This is interesting for the development of purely automatic segmentation algorithms for multimedia applications. In this paper the segmentation of the visual system is modelled and used in an automatic coarse initial segmentation. A suitable model for motion processing based on a spectral representation is presented and applied to the segmentation of synthetic and real image sequences with band limited and accelerated moving foreground and background segments.

  5. A Generative Model for Image Segmentation Based on Label Fusion

    OpenAIRE

    Sabuncu, Mert R.; Thomas Yeo, B.T.; Van Leemput, Koen; Fischl, Bruce; Golland, Polina

    2010-01-01

    We propose a nonparametric, probabilistic model for the automatic segmentation of medical images, given a training set of images and corresponding label maps. The resulting inference algorithms rely on pairwise registrations between the test image and individual training images. The training labels are then transferred to the test image and fused to compute the final segmentation of the test subject. Such label fusion methods have been shown to yield accurate segmentation, since the use of mu...

  6. Visual Knowledge Representation and Intelligent Image Segmentation

    Institute of Scientific and Technical Information of China (English)

    1992-01-01

    Automatic medical image analysis shows that image segmentation is a crucial task for any practical AI system in this field.On the basis of evaluation of the existing segmentation methods,a new image segmentation method is presented.To seek the perfct solution to knowledge representation in low level machine vision,a new knowledge representation approach--“Notebbok”approach is proposed and the processing of visual knowledge is discussed at all levels.To integrate the computer vision theory with Gestalt psychology and knowledge engineering,a new integrated method for intelligent image segmentation of sonargraphs- “Generalized-pattern guided segmentation”is proposed.With the methods and techniques mentioned above,the medical diagnosis expert system for sonargraphs can be built The work on the preliminary experiments is also introduced.

  7. A Flexible Semi-Automatic Approach for Glioblastoma multiforme Segmentation

    CERN Document Server

    Egger, Jan; Kuhnt, Daniela; Kappus, Christoph; Carl, Barbara; Freisleben, Bernd; Nimsky, Christopher

    2011-01-01

    Gliomas are the most common primary brain tumors, evolving from the cerebral supportive cells. For clinical follow-up, the evaluation of the preoperative tumor volume is essential. Volumetric assessment of tumor volume with manual segmentation of its outlines is a time-consuming process that can be overcome with the help of segmentation methods. In this paper, a flexible semi-automatic approach for grade IV glioma segmentation is presented. The approach uses a novel segmentation scheme for spherical objects that creates a directed 3D graph. Thereafter, the minimal cost closed set on the graph is computed via a polynomial time s-t cut, creating an optimal segmentation of the tumor. The user can improve the results by specifying an arbitrary number of additional seed points to support the algorithm with grey value information and geometrical constraints. The presented method is tested on 12 magnetic resonance imaging datasets. The ground truth of the tumor boundaries are manually extracted by neurosurgeons. The...

  8. Automatic breast density segmentation: an integration of different approaches

    International Nuclear Information System (INIS)

    Mammographic breast density has been found to be a strong risk factor for breast cancer. In most studies, it is assessed with a user-assisted threshold method, which is time consuming and subjective. In this study, we develop a breast density segmentation method that is fully automatic. The method is based on pixel classification in which different approaches known in the literature to segment breast density are integrated and extended. In addition, the method incorporates the knowledge of a trained observer, by using segmentations obtained by the user-assisted threshold method as training data. The method is trained and tested using 1300 digitized film mammographic images acquired with a variety of systems. Results show a high correspondence between the automated method and the user-assisted threshold method. Pearson's correlation coefficient between our method and the user-assisted method is R = 0.911 for percent density and R = 0.895 for dense area, which is substantially higher than the best correlation found in the literature (R = 0.70, R = 0.68). The area under the receiver operating characteristic curve obtained when discriminating between fatty and dense pixels is 0.987. A combination of segmentation strategies outperforms the application of single segmentation techniques.

  9. Multiple Segmentation of Image Stacks

    DEFF Research Database (Denmark)

    Smets, Jonathan; Jaeger, Manfred

    2014-01-01

    segmentations that capture different structural elements of the image. We also apply the method to collections of images with identical pixel dimensions, which we call image stacks. Here it turns out that the method is able to both identify groups of similar images in the stack, and to provide segmentations...

  10. Automated medical image segmentation techniques

    OpenAIRE

    Sharma Neeraj; Aggarwal Lalit

    2010-01-01

    Accurate segmentation of medical images is a key step in contouring during radiotherapy planning. Computed topography (CT) and Magnetic resonance (MR) imaging are the most widely used radiographic techniques in diagnosis, clinical studies and treatment planning. This review provides details of automated segmentation methods, specifically discussed in the context of CT and MR images. The motive is to discuss the problems encountered in segmentation of CT and MR images, and the relative merits ...

  11. Automatic Segmentation of News Items Based on Video and Audio Features

    Institute of Scientific and Technical Information of China (English)

    王伟强; 高文

    2002-01-01

    The automatic segmentation of news items is a key for implementing the automatic cataloging system of news video. This paper presents an approach which manages audio and video feature information to automatically segment news items. The integration of audio and visual analyses can overcome the weakness of the approach using only image analysis techniques. It makes the approach more adaptable to various situations of news items. The proposed approach detects silence segments in accompanying audio, and integrates them with shot segmentation results, as well as anchor shot detection results, to determine the boundaries among news items. Experimental results show that the integration of audio and video features is an effective approach to solving the problem of automatic segmentation of news items.

  12. Unsupervised Multiresolution Image Segmentation Integrating Color and Texture

    Institute of Scientific and Technical Information of China (English)

    XINGQiang; YUANBaozong; TANGXiaofang

    2004-01-01

    Unsupervised segmentation of images is highly useful in various applications including contentbased image retrieval. A novel multiresolution image segmentation algorithm, designed to separate a focused object of interest from background automatically, is described in this paper. According to the principle of human vision system, our algorithm first searches the salient block representing object in global image domain. Then all image blocks are clustered using the feature of color moments and texture in salient block. At last the algorithm classifies the image blocks belonging to object class in high resolution. Experiment shows that our algorithm achieves better segmentation results at higher speed compared with the traditional image segmentation approach using global optimization.

  13. Automatic detection and segmentation of vascular structures in dermoscopy images using a novel vesselness measure based on pixel redness and tubularness

    Science.gov (United States)

    Kharazmi, Pegah; Lui, Harvey; Stoecker, William V.; Lee, Tim

    2015-03-01

    Vascular structures are one of the most important features in the diagnosis and assessment of skin disorders. The presence and clinical appearance of vascular structures in skin lesions is a discriminating factor among different skin diseases. In this paper, we address the problem of segmentation of vascular patterns in dermoscopy images. Our proposed method is composed of three parts. First, based on biological properties of human skin, we decompose the skin to melanin and hemoglobin component using independent component analysis of skin color images. The relative quantities and pure color densities of each component were then estimated. Subsequently, we obtain three reference vectors of the mean RGB values for normal skin, pigmented skin and blood vessels from the hemoglobin component by averaging over 100000 pixels of each group outlined by an expert. Based on the Euclidean distance thresholding, we generate a mask image that extracts the red regions of the skin. Finally, Frangi measure was applied to the extracted red areas to segment the tubular structures. Finally, Otsu's thresholding was applied to segment the vascular structures and get a binary vessel mask image. The algorithm was implemented on a set of 50 dermoscopy images. In order to evaluate the performance of our method, we have artificially extended some of the existing vessels in our dermoscopy data set and evaluated the performance of the algorithm to segment the newly added vessel pixels. A sensitivity of 95% and specificity of 87% were achieved.

  14. TU-A-9A-06: Semi-Automatic Segmentation of Skin Cancer in High-Frequency Ultrasound Images: Initial Comparison with Histology

    Energy Technology Data Exchange (ETDEWEB)

    Gao, Y [Univ. Alabama at Birmingham, Birmingham, AL (United States); Li, X [Medical College of Wisconsin, Milwaukee, WI (United States); Fishman, K [Sensus Healthcare, Boca Raton, FL (United States); Yang, X [Department of Radiation Oncology and Winship Cancer Institute, Emory Univ., Atlanta, GA (United States); Liu, T [Emory Univ, Atlanta, GA (United States)

    2014-06-15

    Purpose: In skin-cancer radiotherapy, the assessment of skin lesion is challenging, particularly with important features such as the depth and width hard to determine. The aim of this study is to develop interative segmentation method to delineate tumor boundary using high-frequency ultrasound images and to correlate the segmentation results with the histopathological tumor dimensions. Methods: We analyzed 6 patients who comprised a total of 10 skin lesions involving the face, scalp, and hand. The patient’s various skin lesions were scanned using a high-frequency ultrasound system (Episcan, LONGPORT, INC., PA, U.S.A), with a 30-MHz single-element transducer. The lateral resolution was 14.6 micron and the axial resolution was 3.85 micron for the ultrasound image. Semiautomatic image segmentation was performed to extract the cancer region, using a robust statistics driven active contour algorithm. The corresponding histology images were also obtained after tumor resection and served as the reference standards in this study. Results: Eight out of the 10 lesions are successfully segmented. The ultrasound tumor delineation correlates well with the histology assessment, in all the measurements such as depth, size, and shape. The depths measured by the ultrasound have an average of 9.3% difference comparing with that in the histology images. The remaining 2 cases suffered from the situation of mismatching between pathology and ultrasound images. Conclusion: High-frequency ultrasound is a noninvasive, accurate and easy-accessible modality to image skin cancer. Our segmentation method, combined with high-frequency ultrasound technology, provides a promising tool to estimate the extent of the tumor to guide the radiotherapy procedure and monitor treatment response.

  15. Simplified labeling process for medical image segmentation.

    Science.gov (United States)

    Gao, Mingchen; Huang, Junzhou; Huang, Xiaolei; Zhang, Shaoting; Metaxas, Dimitris N

    2012-01-01

    Image segmentation plays a crucial role in many medical imaging applications by automatically locating the regions of interest. Typically supervised learning based segmentation methods require a large set of accurately labeled training data. However, thel labeling process is tedious, time consuming and sometimes not necessary. We propose a robust logistic regression algorithm to handle label outliers such that doctors do not need to waste time on precisely labeling images for training set. To validate its effectiveness and efficiency, we conduct carefully designed experiments on cervigram image segmentation while there exist label outliers. Experimental results show that the proposed robust logistic regression algorithms achieve superior performance compared to previous methods, which validates the benefits of the proposed algorithms. PMID:23286072

  16. Evaluation for Uncertain Image Classification and Segmentation

    CERN Document Server

    Martin, Arnaud; Arnold-Bos, Andreas

    2008-01-01

    Each year, numerous segmentation and classification algorithms are invented or reused to solve problems where machine vision is needed. Generally, the efficiency of these algorithms is compared against the results given by one or many human experts. However, in many situations, the location of the real boundaries of the objects as well as their classes are not known with certainty by the human experts. Furthermore, only one aspect of the segmentation and classification problem is generally evaluated. In this paper we present a new evaluation method for classification and segmentation of image, where we take into account both the classification and segmentation results as well as the level of certainty given by the experts. As a concrete example of our method, we evaluate an automatic seabed characterization algorithm based on sonar images.

  17. Automatic segmentation and classification of multiple sclerosis in multichannel MRI.

    Science.gov (United States)

    Akselrod-Ballin, Ayelet; Galun, Meirav; Gomori, John Moshe; Filippi, Massimo; Valsasina, Paola; Basri, Ronen; Brandt, Achi

    2009-10-01

    We introduce a multiscale approach that combines segmentation with classification to detect abnormal brain structures in medical imagery, and demonstrate its utility in automatically detecting multiple sclerosis (MS) lesions in 3-D multichannel magnetic resonance (MR) images. Our method uses segmentation to obtain a hierarchical decomposition of a multichannel, anisotropic MR scans. It then produces a rich set of features describing the segments in terms of intensity, shape, location, neighborhood relations, and anatomical context. These features are then fed into a decision forest classifier, trained with data labeled by experts, enabling the detection of lesions at all scales. Unlike common approaches that use voxel-by-voxel analysis, our system can utilize regional properties that are often important for characterizing abnormal brain structures. We provide experiments on two types of real MR images: a multichannel proton-density-, T2-, and T1-weighted dataset of 25 MS patients and a single-channel fluid attenuated inversion recovery (FLAIR) dataset of 16 MS patients. Comparing our results with lesion delineation by a human expert and with previously extensively validated results shows the promise of the approach. PMID:19758850

  18. Automatic partitioning of head CTA for enabling segmentation

    Science.gov (United States)

    Suryanarayanan, Srikanth; Mullick, Rakesh; Mallya, Yogish; Kamath, Vidya; Nagaraj, Nithin

    2004-05-01

    Radiologists perform a CT Angiography procedure to examine vascular structures and associated pathologies such as aneurysms. Volume rendering is used to exploit volumetric capabilities of CT that provides complete interactive 3-D visualization. However, bone forms an occluding structure and must be segmented out. The anatomical complexity of the head creates a major challenge in the segmentation of bone and vessel. An analysis of the head volume reveals varying spatial relationships between vessel and bone that can be separated into three sub-volumes: "proximal", "middle", and "distal". The "proximal" and "distal" sub-volumes contain good spatial separation between bone and vessel (carotid referenced here). Bone and vessel appear contiguous in the "middle" partition that remains the most challenging region for segmentation. The partition algorithm is used to automatically identify these partition locations so that different segmentation methods can be developed for each sub-volume. The partition locations are computed using bone, image entropy, and sinus profiles along with a rule-based method. The algorithm is validated on 21 cases (varying volume sizes, resolution, clinical sites, pathologies) using ground truth identified visually. The algorithm is also computationally efficient, processing a 500+ slice volume in 6 seconds (an impressive 0.01 seconds / slice) that makes it an attractive algorithm for pre-processing large volumes. The partition algorithm is integrated into the segmentation workflow. Fast and simple algorithms are implemented for processing the "proximal" and "distal" partitions. Complex methods are restricted to only the "middle" partition. The partitionenabled segmentation has been successfully tested and results are shown from multiple cases.

  19. Segmentation of Extrapulmonary Tuberculosis Infection Using Modified Automatic Seeded Region Growing

    Directory of Open Access Journals (Sweden)

    Nordin Abdul

    2009-01-01

    Full Text Available Abstract In the image segmentation process of positron emission tomography combined with computed tomography (PET/CT imaging, previous works used information in CT only for segmenting the image without utilizing the information that can be provided by PET. This paper proposes to utilize the hot spot values in PET to guide the segmentation in CT, in automatic image segmentation using seeded region growing (SRG technique. This automatic segmentation routine can be used as part of automatic diagnostic tools. In addition to the original initial seed selection using hot spot values in PET, this paper also introduces a new SRG growing criterion, the sliding windows. Fourteen images of patients having extrapulmonary tuberculosis have been examined using the above-mentioned method. To evaluate the performance of the modified SRG, three fidelity criteria are measured: percentage of under-segmentation area, percentage of over-segmentation area, and average time consumption. In terms of the under-segmentation percentage, SRG with average of the region growing criterion shows the least error percentage (51.85%. Meanwhile, SRG with local averaging and variance yielded the best results (2.67% for the over-segmentation percentage. In terms of the time complexity, the modified SRG with local averaging and variance growing criterion shows the best performance with 5.273 s average execution time. The results indicate that the proposed methods yield fairly good performance in terms of the over- and under-segmentation area. The results also demonstrated that the hot spot values in PET can be used to guide the automatic segmentation in CT image.

  20. [Segmentation Method for Liver Organ Based on Image Sequence Context].

    Science.gov (United States)

    Zhang, Meiyun; Fang, Bin; Wang, Yi; Zhong, Nanchang

    2015-10-01

    In view of the problems of more artificial interventions and segmentation defects in existing two-dimensional segmentation methods and abnormal liver segmentation errors in three-dimensional segmentation methods, this paper presents a semi-automatic liver organ segmentation method based on the image sequence context. The method takes advantage of the existing similarity between the image sequence contexts of the prior knowledge of liver organs, and combines region growing and level set method to carry out semi-automatic segmentation of livers, along with the aid of a small amount of manual intervention to deal with liver mutation situations. The experiment results showed that the liver segmentation algorithm presented in this paper had a high precision, and a good segmentation effect on livers which have greater variability, and can meet clinical application demands quite well.

  1. Automatic segmentation of abdominal vessels for improved pancreas localization

    Science.gov (United States)

    Farag, Amal; Liu, Jiamin; Summers, Ronald M.

    2014-03-01

    Accurate automatic detection and segmentation of abdominal organs from CT images is important for quantitative and qualitative organ tissue analysis as well as computer-aided diagnosis. The large variability of organ locations, the spatial interaction between organs that appear similar in medical scans and orientation and size variations are among the major challenges making the task very difficult. The pancreas poses these challenges in addition to its flexibility which allows for the shape of the tissue to vastly change. Due to the close proximity of the pancreas to numerous surrounding organs within the abdominal cavity the organ shifts according to the conditions of the organs within the abdomen, as such the pancreas is constantly changing. Combining these challenges with typically found patient-to-patient variations and scanning conditions the pancreas becomes harder to localize. In this paper we focus on three abdominal vessels that almost always abut the pancreas tissue and as such useful landmarks to identify the relative location of the pancreas. The splenic and portal veins extend from the hila of the spleen and liver, respectively, travel through the abdominal cavity and join at a position close to the head of the pancreas known as the portal confluence. A third vein, the superior mesenteric vein, anastomoses with the other two veins at the portal confluence. An automatic segmentation framework for obtaining the splenic vein, portal confluence and superior mesenteric vein is proposed using 17 contrast enhanced computed-tomography datasets. The proposed method uses outputs from the multi-organ multi-atlas label fusion and Frangi vesselness filter to obtain automatic seed points for vessel tracking and generation of statistical models of the desired vessels. The approach shows ability to identify the vessels and improve localization of the pancreas within the abdomen.

  2. A dorsolateral prefrontal cortex semi-automatic segmenter

    Science.gov (United States)

    Al-Hakim, Ramsey; Fallon, James; Nain, Delphine; Melonakos, John; Tannenbaum, Allen

    2006-03-01

    Structural, functional, and clinical studies in schizophrenia have, for several decades, consistently implicated dysfunction of the prefrontal cortex in the etiology of the disease. Functional and structural imaging studies, combined with clinical, psychometric, and genetic analyses in schizophrenia have confirmed the key roles played by the prefrontal cortex and closely linked "prefrontal system" structures such as the striatum, amygdala, mediodorsal thalamus, substantia nigra-ventral tegmental area, and anterior cingulate cortices. The nodal structure of the prefrontal system circuit is the dorsal lateral prefrontal cortex (DLPFC), or Brodmann area 46, which also appears to be the most commonly studied and cited brain area with respect to schizophrenia. 1, 2, 3, 4 In 1986, Weinberger et. al. tied cerebral blood flow in the DLPFC to schizophrenia.1 In 2001, Perlstein et. al. demonstrated that DLPFC activation is essential for working memory tasks commonly deficient in schizophrenia. 2 More recently, groups have linked morphological changes due to gene deletion and increased DLPFC glutamate concentration to schizophrenia. 3, 4 Despite the experimental and clinical focus on the DLPFC in structural and functional imaging, the variability of the location of this area, differences in opinion on exactly what constitutes DLPFC, and inherent difficulties in segmenting this highly convoluted cortical region have contributed to a lack of widely used standards for manual or semi-automated segmentation programs. Given these implications, we developed a semi-automatic tool to segment the DLPFC from brain MRI scans in a reproducible way to conduct further morphological and statistical studies. The segmenter is based on expert neuroanatomist rules (Fallon-Kindermann rules), inspired by cytoarchitectonic data and reconstructions presented by Rajkowska and Goldman-Rakic. 5 It is semi-automated to provide essential user interactivity. We present our results and provide details on

  3. BW Trained HMM based Aerial Image Segmentation

    Directory of Open Access Journals (Sweden)

    R Rajasree

    2011-03-01

    Full Text Available Image segmentation is an essential preprocessing tread in a complicated and composite image dealing out algorithm. In segmenting arial image the expenditure of misclassification could depend on the factual group of pupils. In this paper, aggravated by modern advances in contraption erudition conjecture, I introduce a modus operandi to make light of the misclassification expenditure with class-dependent expenditure. The procedure assumes the hidden Markov model (HMM which has been popularly used for image segmentation in recent years. We represent all feasible HMM based segmenters (or classifiers as a set of points in the beneficiary operating characteristic (ROC space. optimizing HMM parameters is still an important and challenging work in automatic image segmentation research area. Usually the Baum-Welch (B-W Algorithm is used to calculate the HMM model parameters. However, the B-W algorithm uses an initial random guess of the parameters, therefore after convergence the output tends to be close to this initial value of the algorithm, which is not necessarily the global optimum of the model parameters. In this project, a Adaptive Baum-Welch (GA-BW is proposed.

  4. Efficient segmentation of skin epidermis in whole slide histopathological images.

    Science.gov (United States)

    Xu, Hongming; Mandal, Mrinal

    2015-08-01

    Segmentation of epidermis areas is an important step towards automatic analysis of skin histopathological images. This paper presents a robust technique for epidermis segmentation in whole slide skin histopathological images. The proposed technique first performs a coarse epidermis segmentation using global thresholding and shape analysis. The epidermis thickness is then estimated by a series of line segments perpendicular to the main axis of the initially segmented epidermis mask. If the segmented epidermis mask has a thickness greater than a predefined threshold, the segmentation is suspected to be inaccurate. A second pass of fine segmentation using k-means algorithm is then carried out over these coarsely segmented result to enhance the performance. Experimental results on 64 different skin histopathological images show that the proposed technique provides a superior performance compared to the existing techniques. PMID:26737135

  5. Automatic Segmentation of Nature Object Using Salient Edge Points Based Active Contour

    Directory of Open Access Journals (Sweden)

    Shangbing Gao

    2015-01-01

    Full Text Available Natural image segmentation is often a crucial first step for high-level image understanding, significantly reducing the complexity of content analysis of images. LRAC may have some disadvantages. (1 Segmentation results heavily depend on the initial contour selection which is a very skillful task. (2 In some situations, manual interactions are infeasible. To overcome these shortcomings, we propose a novel model for unsupervised segmentation of viewer’s attention object from natural images based on localizing region-based active model (LRAC. With aid of the color boosting Harris detector and the core saliency map, we get the salient object edge points. Then, these points are employed as the seeds of initial convex hull. Finally, this convex hull is improved by the edge-preserving filter to generate the initial contour for our automatic object segmentation system. In contrast with localizing region-based active contours that require considerable user interaction, the proposed method does not require it; that is, the segmentation task is fulfilled in a fully automatic manner. Extensive experiments results on a large variety of natural images demonstrate that our algorithm consistently outperforms the popular existing salient object segmentation methods, yielding higher precision and better recall rates. Our framework can reliably and automatically extract the object contour from the complex background.

  6. Transfer learning improves supervised image segmentation across imaging protocols

    DEFF Research Database (Denmark)

    van Opbroek, Annegreet; Ikram, M. Arfan; Vernooij, Meike W.;

    2015-01-01

    The variation between images obtained with different scanners or different imaging protocols presents a major challenge in automatic segmentation of biomedical images. This variation especially hampers the application of otherwise successful supervised-learning techniques which, in order to perform...... well, often require a large amount of labeled training data that is exactly representative of the target data. We therefore propose to use transfer learning for image segmentation. Transfer-learning techniques can cope with differences in distributions between training and target data, and therefore...... may improve performance over supervised learning for segmentation across scanners and scan protocols. We present four transfer classifiers that can train a classification scheme with only a small amount of representative training data, in addition to a larger amount of other training data...

  7. Bayesian segmentation of hyperspectral images

    CERN Document Server

    Mohammadpour, Adel; Mohammad-Djafari, Ali

    2007-01-01

    In this paper we consider the problem of joint segmentation of hyperspectral images in the Bayesian framework. The proposed approach is based on a Hidden Markov Modeling (HMM) of the images with common segmentation, or equivalently with common hidden classification label variables which is modeled by a Potts Markov Random Field. We introduce an appropriate Markov Chain Monte Carlo (MCMC) algorithm to implement the method and show some simulation results.

  8. Bayesian segmentation of hyperspectral images

    Science.gov (United States)

    Mohammadpour, Adel; Féron, Olivier; Mohammad-Djafari, Ali

    2004-11-01

    In this paper we consider the problem of joint segmentation of hyperspectral images in the Bayesian framework. The proposed approach is based on a Hidden Markov Modeling (HMM) of the images with common segmentation, or equivalently with common hidden classification label variables which is modeled by a Potts Markov Random Field. We introduce an appropriate Markov Chain Monte Carlo (MCMC) algorithm to implement the method and show some simulation results.

  9. 医学图像自动分割的混合聚类方法%A HYBRID CLUSTERING METHOD FOR AUTOMATIC MEDICAL IMAGE SEGMENTATION

    Institute of Scientific and Technical Information of China (English)

    迟冬祥; 黎明; 赵莹

    2011-01-01

    Segmentation result and automation level of medical images impact significantly on those aspects including computer-aided diagnosis and visualisation. In light to the features of medical images with low-contrast and high noisy influences, a hybrid clustering method is proposed. After the pre-processing step, the neighbouring eigenvectors of each pixel are fed into a self-organising map (SOM) for training. The output prototype vectors of SOM, as the preliminary clustering outcomes, are then filtered with hits-map, and followed by further processing with a hierarchical agglomerative clustering method. A quantitative index of image segmentation is selected to determine the best sort number of the clustering after comparing the Davies-Bouldin ( DB) clustering evaluation index with two other image segmentation evaluation indices. The final segmentation results are obtained from the post-processing. Analyses show that the proposed method is effective. Meanwhile, its limitations and the research work in the future are also discussed.%医学图像的分割效果和自动化程度对计算机辅助诊断和可视化等方面有重要影响.针对医学图像低对比度、噪声影响大的特点,提出一种混合聚类方法:在预处理图像之后,将每个像素的邻域特征向量送入自组织特征映射网络SOM(self-organizing map)中进行训练;作为初步聚类的结果,SOM的输出典型向量根据命中图(Hits-Map)过滤,再由层次合并聚类方法进一步处理.在比较了一种聚类评价指数和两种图像分割评价指数之后,采用图像分割量化指数来确定聚类的最佳类别数;再通过后处理得到最后分割结果,分析表明这个方法是有效的.同时,也指出其不足之处和进一步研究的方向.

  10. Clustering based segmentation of text in complex color images

    Institute of Scientific and Technical Information of China (English)

    毛文革; 王洪滨; 张田文

    2004-01-01

    We propose a novel scheme based on clustering analysis in color space to solve text segmentation in complex color images. Text segmentation includes automatic clustering of color space and foreground image generation. Two methods are also proposed for automatic clustering: The first one is to determine the optimal number of clusters and the second one is the fuzzy competitively clustering method based on competitively learning techniques. Essential foreground images obtained from any of the color clusters are combined into foreground images. Further performance analysis reveals the advantages of the proposed methods.

  11. Automatic Extraction of Planetary Image Features

    Science.gov (United States)

    Troglio, G.; LeMoigne, J.; Moser, G.; Serpico, S. B.; Benediktsson, J. A.

    2009-01-01

    With the launch of several Lunar missions such as the Lunar Reconnaissance Orbiter (LRO) and Chandrayaan-1, a large amount of Lunar images will be acquired and will need to be analyzed. Although many automatic feature extraction methods have been proposed and utilized for Earth remote sensing images, these methods are not always applicable to Lunar data that often present low contrast and uneven illumination characteristics. In this paper, we propose a new method for the extraction of Lunar features (that can be generalized to other planetary images), based on the combination of several image processing techniques, a watershed segmentation and the generalized Hough Transform. This feature extraction has many applications, among which image registration.

  12. 3D Fast Automatic Segmentation of Kidney Based on Modified AAM and Random Forest.

    Science.gov (United States)

    Jin, Chao; Shi, Fei; Xiang, Dehui; Jiang, Xueqing; Zhang, Bin; Wang, Ximing; Zhu, Weifang; Gao, Enting; Chen, Xinjian

    2016-06-01

    In this paper, a fully automatic method is proposed to segment the kidney into multiple components: renal cortex, renal column, renal medulla and renal pelvis, in clinical 3D CT abdominal images. The proposed fast automatic segmentation method of kidney consists of two main parts: localization of renal cortex and segmentation of kidney components. In the localization of renal cortex phase, a method which fully combines 3D Generalized Hough Transform (GHT) and 3D Active Appearance Models (AAM) is applied to localize the renal cortex. In the segmentation of kidney components phase, a modified Random Forests (RF) method is proposed to segment the kidney into four components based on the result from localization phase. During the implementation, a multithreading technology is applied to speed up the segmentation process. The proposed method was evaluated on a clinical abdomen CT data set, including 37 contrast-enhanced volume data using leave-one-out strategy. The overall true-positive volume fraction and false-positive volume fraction were 93.15%, 0.37% for renal cortex segmentation; 83.09%, 0.97% for renal column segmentation; 81.92%, 0.55% for renal medulla segmentation; and 80.28%, 0.30% for renal pelvis segmentation, respectively. The average computational time of segmenting kidney into four components took 20 seconds. PMID:26742124

  13. An image segmentation method for apple sorting and grading using support vector machine and Otsu's method

    Science.gov (United States)

    Segmentation is the first step in image analysis to subdivide an image into meaningful regions. The segmentation result directly affects the subsequent image analysis. The objective of the research was to develop an automatic adjustable algorithm for segmentation of color images, using linear suppor...

  14. Segmentation of Color Images Based on Different Segmentation Techniques

    OpenAIRE

    Purnashti Bhosale; Aniket Gokhale

    2013-01-01

    In this paper, we propose an Color image segmentation algorithm based on different segmentation techniques. We recognize the background objects such as the sky, ground, and trees etc based on the color and texture information using various methods of segmentation. The study of segmentation techniques by using different threshold methods such as global and local techniques and they are compared with one another so as to choose the best technique for threshold segmentation. Further segmentation...

  15. An Active Contour for Range Image Segmentation

    OpenAIRE

    Khaldi Amine; Merouani Hayet Farida

    2012-01-01

    In this paper a new classification of range image segmentation method is proposed according to the criterion of homogeneity which obeys the segmentation, then, a deformable model-type active contour “Snake” is applied to segment range images.

  16. Automatic Feature Extraction from Planetary Images

    Science.gov (United States)

    Troglio, Giulia; Le Moigne, Jacqueline; Benediktsson, Jon A.; Moser, Gabriele; Serpico, Sebastiano B.

    2010-01-01

    With the launch of several planetary missions in the last decade, a large amount of planetary images has already been acquired and much more will be available for analysis in the coming years. The image data need to be analyzed, preferably by automatic processing techniques because of the huge amount of data. Although many automatic feature extraction methods have been proposed and utilized for Earth remote sensing images, these methods are not always applicable to planetary data that often present low contrast and uneven illumination characteristics. Different methods have already been presented for crater extraction from planetary images, but the detection of other types of planetary features has not been addressed yet. Here, we propose a new unsupervised method for the extraction of different features from the surface of the analyzed planet, based on the combination of several image processing techniques, including a watershed segmentation and the generalized Hough Transform. The method has many applications, among which image registration and can be applied to arbitrary planetary images.

  17. Image Segmentation Based on Support Vector Machine

    Institute of Scientific and Technical Information of China (English)

    XU Hai-xiang; ZHU Guang-xi; TIAN Jin-wen; ZHANG Xiang; PENG Fu-yuan

    2005-01-01

    Image segmentation is a necessary step in image analysis. Support vector machine (SVM) approach is proposed to segment images and its segmentation performance is evaluated.Experimental results show that: the effects of kernel function and model parameters on the segmentation performance are significant; SVM approach is less sensitive to noise in image segmentation; The segmentation performance of SVM approach is better than that of back-propagation multi-layer perceptron (BP-MLP) approach and fuzzy c-means (FCM) approach.

  18. Quantitative evaluation of six graph based semi-automatic liver tumor segmentation techniques using multiple sets of reference segmentation

    Science.gov (United States)

    Su, Zihua; Deng, Xiang; Chefd'hotel, Christophe; Grady, Leo; Fei, Jun; Zheng, Dong; Chen, Ning; Xu, Xiaodong

    2011-03-01

    Graph based semi-automatic tumor segmentation techniques have demonstrated great potential in efficiently measuring tumor size from CT images. Comprehensive and quantitative validation is essential to ensure the efficacy of graph based tumor segmentation techniques in clinical applications. In this paper, we present a quantitative validation study of six graph based 3D semi-automatic tumor segmentation techniques using multiple sets of expert segmentation. The six segmentation techniques are Random Walk (RW), Watershed based Random Walk (WRW), LazySnapping (LS), GraphCut (GHC), GrabCut (GBC), and GrowCut (GWC) algorithms. The validation was conducted using clinical CT data of 29 liver tumors and four sets of expert segmentation. The performance of the six algorithms was evaluated using accuracy and reproducibility. The accuracy was quantified using Normalized Probabilistic Rand Index (NPRI), which takes into account of the variation of multiple expert segmentations. The reproducibility was evaluated by the change of the NPRI from 10 different sets of user initializations. Our results from the accuracy test demonstrated that RW (0.63) showed the highest NPRI value, compared to WRW (0.61), GWC (0.60), GHC (0.58), LS (0.57), GBC (0.27). The results from the reproducibility test indicated that GBC is more sensitive to user initialization than the other five algorithms. Compared to previous tumor segmentation validation studies using one set of reference segmentation, our evaluation methods use multiple sets of expert segmentation to address the inter or intra rater variability issue in ground truth annotation, and provide quantitative assessment for comparing different segmentation algorithms.

  19. Automatically Gradient Threshold Estimation of Anisotropic Diffusion for Meyer’s Watershed Algorithm Based Optimal Segmentation

    Directory of Open Access Journals (Sweden)

    Mithun Kumar PK

    2014-11-01

    Full Text Available Medical image segmentation is a fundamental task in the medical imaging field. Optimal segmentation is required for the accurate judgment or appropriate clinical diagnosis. In this paper, we proposed automatically gradient threshold estimator of anisotropic diffusion for Meyer’s Watershed algorithm based optimal segmentation. The Meyer’s Watershed algorithm is the most significant for a large number of regions separations but the over segmentation is the major drawback of the Meyer’s Watershed algorithm. We are able to remove over segmentation after using anisotropic diffusion as a preprocessing step of segmentation in the Meyer’s Watershed algorithm. We used a fixed window size for dynamically gradient threshold estimation. The gradient threshold is the most important parameter of the anisotropic diffusion for image smoothing. The proposed method is able to segment medical image accurately because of obtaining the enhancement image. The introducing method demonstrates better performance without loss of any clinical information while preserving edges. Our investigated method is more efficient and effective in order to segment the region of interests in the medical images indeed.

  20. Dictionary Based Image Segmentation

    OpenAIRE

    Dahl, Anders Bjorholm; Dahl, Vedrana Andersen

    2015-01-01

    We propose a method for weakly supervised segmentationof natural images, which may contain both textured or non-texturedregions. Our texture representation is based on a dictionary of imagepatches. To divide an image into separated regions with similar texturewe use an implicit level sets representation of the curve, which makesour method topologically adaptive. In addition, we suggest a multi-labelversion of the method. Finally, we improve upon a similar texture representation,by formulating...

  1. Multimodal Correlative Preclinical Whole Body Imaging and Segmentation.

    Science.gov (United States)

    Akselrod-Ballin, Ayelet; Dafni, Hagit; Addadi, Yoseph; Biton, Inbal; Avni, Reut; Brenner, Yafit; Neeman, Michal

    2016-01-01

    Segmentation of anatomical structures and particularly abdominal organs is a fundamental problem for quantitative image analysis in preclinical research. This paper presents a novel approach for whole body segmentation of small animals in a multimodal setting of MR, CT and optical imaging. The algorithm integrates multiple imaging sequences into a machine learning framework, which generates supervoxels by an efficient hierarchical agglomerative strategy and utilizes multiple SVM-kNN classifiers each constrained by a heatmap prior region to compose the segmentation. We demonstrate results showing segmentation of mice images into several structures including the heart, lungs, liver, kidneys, stomach, vena cava, bladder, tumor, and skeleton structures. Experimental validation on a large set of mice and organs, indicated that our system outperforms alternative state of the art approaches. The system proposed can be generalized to various tissues and imaging modalities to produce automatic atlas-free segmentation, thereby enabling a wide range of applications in preclinical studies of small animal imaging. PMID:27325178

  2. Skin lesion image segmentation using Delaunay Triangulation for melanoma detection.

    Science.gov (United States)

    Pennisi, Andrea; Bloisi, Domenico D; Nardi, Daniele; Giampetruzzi, Anna Rita; Mondino, Chiara; Facchiano, Antonio

    2016-09-01

    Developing automatic diagnostic tools for the early detection of skin cancer lesions in dermoscopic images can help to reduce melanoma-induced mortality. Image segmentation is a key step in the automated skin lesion diagnosis pipeline. In this paper, a fast and fully-automatic algorithm for skin lesion segmentation in dermoscopic images is presented. Delaunay Triangulation is used to extract a binary mask of the lesion region, without the need of any training stage. A quantitative experimental evaluation has been conducted on a publicly available database, by taking into account six well-known state-of-the-art segmentation methods for comparison. The results of the experimental analysis demonstrate that the proposed approach is highly accurate when dealing with benign lesions, while the segmentation accuracy significantly decreases when melanoma images are processed. This behavior led us to consider geometrical and color features extracted from the binary masks generated by our algorithm for classification, achieving promising results for melanoma detection. PMID:27215953

  3. Skin lesion image segmentation using Delaunay Triangulation for melanoma detection.

    Science.gov (United States)

    Pennisi, Andrea; Bloisi, Domenico D; Nardi, Daniele; Giampetruzzi, Anna Rita; Mondino, Chiara; Facchiano, Antonio

    2016-09-01

    Developing automatic diagnostic tools for the early detection of skin cancer lesions in dermoscopic images can help to reduce melanoma-induced mortality. Image segmentation is a key step in the automated skin lesion diagnosis pipeline. In this paper, a fast and fully-automatic algorithm for skin lesion segmentation in dermoscopic images is presented. Delaunay Triangulation is used to extract a binary mask of the lesion region, without the need of any training stage. A quantitative experimental evaluation has been conducted on a publicly available database, by taking into account six well-known state-of-the-art segmentation methods for comparison. The results of the experimental analysis demonstrate that the proposed approach is highly accurate when dealing with benign lesions, while the segmentation accuracy significantly decreases when melanoma images are processed. This behavior led us to consider geometrical and color features extracted from the binary masks generated by our algorithm for classification, achieving promising results for melanoma detection.

  4. Segmentation Toolbox for Tomographic Image Data

    DEFF Research Database (Denmark)

    Einarsdottir, Hildur

    , techniques to automatically analyze such data becomes ever more important. Most segmentation methods for large datasets, such as CT images, deal with simple thresholding techniques, where intensity values cut offs are predetermined and hard coded. For data where the intensity difference is not sufficient......Motivation: Image acquisition has vastly improved over the past years, introducing techniques such as X-ray computed tomography (CT). CT images provide the means to probe a sample non-invasively to investigate its inner structure. Given the wide usage of this technique and massive data amounts......, and partial volume voxels occur frequently, thresholding methods do not suffice and more advanced methods are required. Contribution: To meet these requirements a toolbox has been developed, combining well known methods within the image analysis field. The toolbox includes cluster-based methods...

  5. Automatic Defect Detection in X-Ray Images Using Image Data Fusion

    Institute of Scientific and Technical Information of China (English)

    TIAN Yuan; DU Dong; CAI Guorui; WANG Li; ZHANG Hua

    2006-01-01

    Automatic defect detection in X-ray images is currently a focus of much research at home and abroad. The technology requires computerized image processing, image analysis, and pattern recognition. This paper describes an image processing method for automatic defect detection using image data fusion which synthesizes several methods including edge extraction, wave profile analyses, segmentation with dynamic threshold, and weld district extraction. Test results show that defects that induce an abrupt change over a predefined extent of the image intensity can be segmented regardless of the number, location, shape, or size. Thus, the method is more robust and practical than the current methods using only one method.

  6. Model-based segmentation of short-axis MR cardiac images

    NARCIS (Netherlands)

    Spreeuwers, L.J.; Breeuwer, M.

    2005-01-01

    Reliable automatic segmentation of MR cardiac images is still an important problem in medical image processing. Although image data quality has improved considerably during the last years, this segmentation is still considered a difficult problem. Manual segmentation is hardly an option as this is e

  7. Combining Constraint Types From Public Data in Aerial Image Segmentation

    DEFF Research Database (Denmark)

    Jacobsen, Thomas Stig; Jensen, Jacob Jon; Jensen, Daniel Rune;

    2013-01-01

    We introduce a method for image segmentation that constraints the clustering with map and point data. The method is showcased by applying the spectral clustering algorithm on aerial images for building detection with constraints built from a height map and address point data. We automatically det...

  8. Image Segmentation, Registration, Compression, and Matching

    Science.gov (United States)

    Yadegar, Jacob; Wei, Hai; Yadegar, Joseph; Ray, Nilanjan; Zabuawala, Sakina

    2011-01-01

    A novel computational framework was developed of a 2D affine invariant matching exploiting a parameter space. Named as affine invariant parameter space (AIPS), the technique can be applied to many image-processing and computer-vision problems, including image registration, template matching, and object tracking from image sequence. The AIPS is formed by the parameters in an affine combination of a set of feature points in the image plane. In cases where the entire image can be assumed to have undergone a single affine transformation, the new AIPS match metric and matching framework becomes very effective (compared with the state-of-the-art methods at the time of this reporting). No knowledge about scaling or any other transformation parameters need to be known a priori to apply the AIPS framework. An automated suite of software tools has been created to provide accurate image segmentation (for data cleaning) and high-quality 2D image and 3D surface registration (for fusing multi-resolution terrain, image, and map data). These tools are capable of supporting existing GIS toolkits already in the marketplace, and will also be usable in a stand-alone fashion. The toolkit applies novel algorithmic approaches for image segmentation, feature extraction, and registration of 2D imagery and 3D surface data, which supports first-pass, batched, fully automatic feature extraction (for segmentation), and registration. A hierarchical and adaptive approach is taken for achieving automatic feature extraction, segmentation, and registration. Surface registration is the process of aligning two (or more) data sets to a common coordinate system, during which the transformation between their different coordinate systems is determined. Also developed here are a novel, volumetric surface modeling and compression technique that provide both quality-guaranteed mesh surface approximations and compaction of the model sizes by efficiently coding the geometry and connectivity

  9. Autonomous Image Segmentation using Density-Adaptive Dendritic Cell Algorithm

    Directory of Open Access Journals (Sweden)

    Vishwambhar Pathak

    2013-08-01

    Full Text Available Contemporary image processing based applications like medical diagnosis automation and analysis of satellite imagery include autonomous image segmentation as inevitable facility. The research done shows the efficiency of an adaptive evolutionary algorithm based on immune system dynamics for the task of autonomous image segmentation. The recognition dynamics of immune-kernels modeled with infinite Gaussian mixture models exhibit the capability to automatically determine appropriate number of segments in presence of noise. In addition, the model using representative density-kernel-parameters processes the information with much reduced space requirements. Experiments conducted with synthetic images as well as real images recorded assured convergence and optimal autonomous model estimation. The segmentation results tested in terms of PBM-index values have been found comparable to those of the Fuzzy C-Means (FCM for the same number of segments as generated by our algorithm.

  10. Fingerprint Image Segmentation Using Haar Wavelet and Self Organizing Map

    Directory of Open Access Journals (Sweden)

    Sri Suwarno

    2013-10-01

    Full Text Available Fingerprint image segmentation is one of the important preprocessing steps in Automatic Fingerprint Identification Systems (AFIS. Segmentation separates image background from image foreground, removing unnecessary information from the image. This paper proposes a new fingerprint segmentation method using Haar wavelet and Kohonen’s Self Organizing Map (SOM. Fingerprint image was decomposed using 2D Haar wavelet in two levels. To generate features vectors, the decomposed image was divided into nonoverlapping blocks of 2x2 pixels and converted into four elements vectors. These vectors were then fed into SOM network that grouped them into foreground and background clusters. Finally, blocks in the background area were removed based on indexes of blocks in the background cluster. From the research that has been carried out, we conclude that the proposed method is effective to segment background from fingerprint images.

  11. Automatic segmentation of lung parenchyma from thoracic CT based on image resampling%基于重采样的胸部CT图像肺实质自动分割

    Institute of Scientific and Technical Information of China (English)

    司广磊; 齐守良; 岳勇; Han J.W.van Triest; 康雁

    2012-01-01

    Automatic lung parenchyma segmentation is one of the most important steps in the computer aided diagnosis (CAD) of the lung. To increase segmentation speed, an algorithm based on resampling of the image data is proposed and implemented. Methods The algorithm firstly resamples and extracts a small part (1/8 ) of the original CT images data. Several steps are implemented to get preliminary segmentation with the resampled data, which include simple threshold segmentation, body region elimination, trachea extraction, removal of interior cavities, left-right lung separation and lung nodule filling. The final results are obtained after projecting the preliminary segmentation to the original dataset and morphology smoothing. The proposed algorithm is applied to 20 patients' data (2556 slices) , and the results are compared to the manual segmentations. Results The algorithm can get accurate results with an average area overlapped ratio 99. 02% to the manual segmentation by the radiologist, and works well for the abnormal cases (right-left connected, with nodules and uncompleted views) . Through resampling, the time consumption of the algorithm is shortened significantly, typically by 50%, and the processing for one slice image is less than 0. 25 s. Conclusions The proposed automatic lung parenchyma segmentation algorithm with excellent robustness and high speed, can get accurate result and satisfy the requirements of current clinical applications.%目的 胸部CT图像的肺实质自动分割是肺部疾病计算机辅助检测的重要基础.为提高分割速度,本文提出并实现了一种基于重采样的分割算法.方法 首先对数据重采样,提取部分(1/8)体数据.再基于重采样体数据,通过阈值分割、胸腔提取、气管剔除、血管填充、左右肺分离和肺壁结节填充等步骤,得到初步分割结果.然后将该结果还原到完整数据体上,形态学平滑后即完成最终分割.最后将算法应用于20

  12. Automatic Compartment Modelling and Segmentation for Dynamical Renal Scintigraphies

    DEFF Research Database (Denmark)

    Ståhl, Daniel; Åström, Kalle; Overgaard, Niels Christian;

    2011-01-01

    for segmentation of pixels into physical compartments, extract their corresponding time-activity curves and then compute the parameters that are relevant for medical assessment. In this paper we present a fully automatic system that incorporates spatial smoothing constraints, compartment modelling and positivity......Time-resolved medical data has important applications in a large variety of medical applications. In this paper we study automatic analysis of dynamical renal scintigraphies. The traditional analysis pipeline for dynamical renal scintigraphies is to use manual or semiautomatic methods...

  13. A Novel Multiresolution Fuzzy Segmentation Method on MR Image

    Institute of Scientific and Technical Information of China (English)

    ZHANG HongMei(张红梅); BIAN ZhengZhong(卞正中); YUAN ZeJian(袁泽剑); YE Min(叶敏); JI Feng(冀峰)

    2003-01-01

    Multiresolution-based magnetic resonance (MR) image segmentation has attractedattention for its ability to capture rich information across scales compared with the conventionalsegmentation methods. In this paper, a new scale-space-based segmentation model is presented,where both the intra-scale and inter-scale properties are considered and formulated as two fuzzyenergy functions. Meanwhile, a control parameter is introduced to adjust the contribution of thesimilarity character across scales and the clustering character within the scale. By minimizing thecombined inter/intra energy function, the multiresolution fuzzy segmentation algorithm is derived.Then the coarse to fine leading segmentation is performed automatically and iteratively on a set ofmultiresolution images. The validity of the proposed algorithm is demonstrated by the test imageand pathological MR images. Experiments show that by this approach the segmentation results,especially in the tumor area delineation, are more precise than those of the conventional fuzzy segmentation methods.

  14. Automatic analysis of a skull fracture based on image content

    Science.gov (United States)

    Shao, Hong; Zhao, Hong

    2003-09-01

    Automatic analysis based on image content is a hotspot with bright future of medical image diagnosis technology research. Analysis of the fracture of skull can help doctors diagnose. In this paper, a new approach is proposed to automatically detect the fracture of skull based on CT image content. First region growing method, whose seeds and growing rules are chosen by k-means clustering dynamically, is applied for image automatic segmentation. The segmented region boundary is found by boundary tracing. Then the shape of the boundary is analyzed, and the circularity measure is taken as description parameter. At last the rules for computer automatic diagnosis of the fracture of the skull are reasoned by entropy function. This method is used to analyze the images from the third ventricles below layer to cerebral cortex top layer. Experimental result shows that the recognition rate is 100% for the 100 images, which are chosen from medical image database randomly and are not included in the training examples. This method integrates color and shape feature, and isn't affected by image size and position. This research achieves high recognition rate and sets a basis for automatic analysis of brain image.

  15. Digital Retinal Images: Background and Damaged Areas Segmentation

    Directory of Open Access Journals (Sweden)

    Eman A. Gani

    2014-07-01

    Full Text Available Digital retinal images are more appropriate for automatic screening of diabetic retinopathy systems. Unfortunately, a significant percentage of these images are poor quality that hiders further analysis due to many factors (such as patient movement, inadequate or non-uniform illumination, acquisition angle and retinal pigmentation. The retinal images of poor quality need to be enhanced before the extraction of features and abnormalities. So, the segmentation of retinal image is essential for this purpose, the segmentation is employed to smooth and strengthen image by separating the background and damaged areas from the overall image thus resulting in retinal image enhancement and less processing time. In this paper, methods for segmenting colored retinal image are proposed to improve the quality of retinal image diagnosis. The methods generates two segmentation masks; i.e., background segmentation mask for extracting the background area and poor quality mask for removing the noisy areas from retinal image. The standard retinal image databases DIARETDB0, DIARETDB1, STARE, DRIVE and some images obtained from ophthalmologists have been used to test the validation of the proposed segmentation technique. Experimental results indicate the introduced methods are effective and can lead to high segmentation accuracy

  16. Cerebral microbleed segmentation from susceptibility weighted images

    Science.gov (United States)

    Roy, Snehashis; Jog, Amod; Magrath, Elizabeth; Butman, John A.; Pham, Dzung L.

    2015-03-01

    Cerebral microbleeds (CMB) are a common marker of traumatic brain injury. Accurate detection and quantification of the CMBs are important for better understanding the progression and prognosis of the injury. Previous microbleed detection methods have suffered from a high rate of false positives, which is time consuming to manually correct. In this paper, we propose a fully automatic, example-based method to segment CMBs from susceptibility-weighted (SWI) scans, where examples from an already segmented template SWI image are used to detect CMBs in a new image. First, multiple radial symmetry transforms (RST) are performed on the template SWI to detect small ellipsoidal structures, which serve as potential microbleed candidates. Then 3D patches from the SWI and its RSTs are combined to form a feature vector at each voxel of the image. A random forest regression is trained using the feature vectors, where the dependent variable is the binary segmentation voxel of the template. Once the regression is learnt, it is applied to a new SWI scan, whose feature vectors contain patches from SWI and its RSTs. Experiments on 26 subjects with mild to severe brain injury show a CMB detection sensitivity of 85:7%, specificity 99:5%, and a false positive to true positive ratio of 1:73, which is competitive with published methods while providing a significant reduction in computation time.

  17. A superpixel-based framework for automatic tumor segmentation on breast DCE-MRI

    Science.gov (United States)

    Yu, Ning; Wu, Jia; Weinstein, Susan P.; Gaonkar, Bilwaj; Keller, Brad M.; Ashraf, Ahmed B.; Jiang, YunQing; Davatzikos, Christos; Conant, Emily F.; Kontos, Despina

    2015-03-01

    Accurate and efficient automated tumor segmentation in breast dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) is highly desirable for computer-aided tumor diagnosis. We propose a novel automatic segmentation framework which incorporates mean-shift smoothing, superpixel-wise classification, pixel-wise graph-cuts partitioning, and morphological refinement. A set of 15 breast DCE-MR images, obtained from the American College of Radiology Imaging Network (ACRIN) 6657 I-SPY trial, were manually segmented to generate tumor masks (as ground truth) and breast masks (as regions of interest). Four state-of-the-art segmentation approaches based on diverse models were also utilized for comparison. Based on five standard evaluation metrics for segmentation, the proposed framework consistently outperformed all other approaches. The performance of the proposed framework was: 1) 0.83 for Dice similarity coefficient, 2) 0.96 for pixel-wise accuracy, 3) 0.72 for VOC score, 4) 0.79 mm for mean absolute difference, and 5) 11.71 mm for maximum Hausdorff distance, which surpassed the second best method (i.e., adaptive geodesic transformation), a semi-automatic algorithm depending on precise initialization. Our results suggest promising potential applications of our segmentation framework in assisting analysis of breast carcinomas.

  18. Automatic segmentation of canine retinal OCT using adaptive gradient enhancement and region growing

    Science.gov (United States)

    He, Yufan; Sun, Yankui; Chen, Min; Zheng, Yuanjie; Liu, Hui; Leon, Cecilia; Beltran, William; Gee, James C.

    2016-03-01

    In recent years, several studies have shown that the canine retina model offers important insight for our understanding of human retinal diseases. Several therapies developed to treat blindness in such models have already moved onto human clinical trials, with more currently under development [1]. Optical coherence tomography (OCT) offers a high resolution imaging modality for performing in-vivo analysis of the retinal layers. However, existing algorithms for automatically segmenting and analyzing such data have been mostly focused on the human retina. As a result, canine retinal images are often still being analyzed using manual segmentations, which is a slow and laborious task. In this work, we propose a method for automatically segmenting 5 boundaries in canine retinal OCT. The algorithm employs the position relationships between different boundaries to adaptively enhance the gradient map. A region growing algorithm is then used on the enhanced gradient maps to find the five boundaries separately. The automatic segmentation was compared against manual segmentations showing an average absolute error of 5.82 +/- 4.02 microns.

  19. Segmentation and learning in the quantitative analysis of microscopy images

    Science.gov (United States)

    Ruggiero, Christy; Ross, Amy; Porter, Reid

    2015-02-01

    In material science and bio-medical domains the quantity and quality of microscopy images is rapidly increasing and there is a great need to automatically detect, delineate and quantify particles, grains, cells, neurons and other functional "objects" within these images. These are challenging problems for image processing because of the variability in object appearance that inevitably arises in real world image acquisition and analysis. One of the most promising (and practical) ways to address these challenges is interactive image segmentation. These algorithms are designed to incorporate input from a human operator to tailor the segmentation method to the image at hand. Interactive image segmentation is now a key tool in a wide range of applications in microscopy and elsewhere. Historically, interactive image segmentation algorithms have tailored segmentation on an image-by-image basis, and information derived from operator input is not transferred between images. But recently there has been increasing interest to use machine learning in segmentation to provide interactive tools that accumulate and learn from the operator input over longer periods of time. These new learning algorithms reduce the need for operator input over time, and can potentially provide a more dynamic balance between customization and automation for different applications. This paper reviews the state of the art in this area, provides a unified view of these algorithms, and compares the segmentation performance of various design choices.

  20. Automated segmentation of pigmented skin lesions in multispectral imaging

    International Nuclear Information System (INIS)

    The aim of this study was to develop an algorithm for the automatic segmentation of multispectral images of pigmented skin lesions. The study involved 1700 patients with 1856 cutaneous pigmented lesions, which were analysed in vivo by a novel spectrophotometric system, before excision. The system is able to acquire a set of 15 different multispectral images at equally spaced wavelengths between 483 and 951 nm. An original segmentation algorithm was developed and applied to the whole set of lesions and was able to automatically contour them all. The obtained lesion boundaries were shown to two expert clinicians, who, independently, rejected 54 of them. The 97.1% contour accuracy indicates that the developed algorithm could be a helpful and effective instrument for the automatic segmentation of skin pigmented lesions. (note)

  1. Automatic Tooth Segmentation of Dental Mesh Based on Harmonic Fields

    OpenAIRE

    Sheng-hui Liao; Shi-jian Liu; Bei-ji Zou; Xi Ding; Ye Liang; Jun-hui Huang

    2015-01-01

    An important preprocess in computer-aided orthodontics is to segment teeth from the dental models accurately, which should involve manual interactions as few as possible. But fully automatic partition of all teeth is not a trivial task, since teeth occur in different shapes and their arrangements vary substantially from one individual to another. The difficulty is exacerbated when severe teeth malocclusion and crowding problems occur, which is a common occurrence in clinical cases. Most publi...

  2. Segmentation of knee injury swelling on infrared images

    Science.gov (United States)

    Puentes, John; Langet, Hélène; Herry, Christophe; Frize, Monique

    2011-03-01

    Interpretation of medical infrared images is complex due to thermal noise, absence of texture, and small temperature differences in pathological zones. Acute inflammatory response is a characteristic symptom of some knee injuries like anterior cruciate ligament sprains, muscle or tendons strains, and meniscus tear. Whereas artificial coloring of the original grey level images may allow to visually assess the extent inflammation in the area, their automated segmentation remains a challenging problem. This paper presents a hybrid segmentation algorithm to evaluate the extent of inflammation after knee injury, in terms of temperature variations and surface shape. It is based on the intersection of rapid color segmentation and homogeneous region segmentation, to which a Laplacian of a Gaussian filter is applied. While rapid color segmentation enables to properly detect the observed core of swollen area, homogeneous region segmentation identifies possible inflammation zones, combining homogeneous grey level and hue area segmentation. The hybrid segmentation algorithm compares the potential inflammation regions partially detected by each method to identify overlapping areas. Noise filtering and edge segmentation are then applied to common zones in order to segment the swelling surfaces of the injury. Experimental results on images of a patient with anterior cruciate ligament sprain show the improved performance of the hybrid algorithm with respect to its separated components. The main contribution of this work is a meaningful automatic segmentation of abnormal skin temperature variations on infrared thermography images of knee injury swelling.

  3. Agent Based Image Segmentation Method : A Review

    OpenAIRE

    Pooja Mishra; Navita Srivastava; Shukla, K. K.; Achintya Singlal

    2011-01-01

    Image segmentation is an important research area in computer vision and many segmentation methods have been proposed. This paper attempts to provide a brief overview of elemental segmentation techniques based on boundary or regional approaches. It focuses mainly on the agent based image segmentation techniques

  4. Segmentation of retinal blood vessels using normalized Gabor filters and automatic thresholding

    Directory of Open Access Journals (Sweden)

    Mandlenkosi Victor Gwetu

    2014-12-01

    Full Text Available Although computerized retinal image blood vessel segmentation has been extensively researched, there is still room for improvement in the quality of the segmented images. Since retinal image analysis is still widely used in the diagnosis of diabetic retinopathy, efficient and accurate image characterization techniques are required. Previous work has mainly focused on improving segmentation accuracy rates with little regard to the false positives that are produced by illumination variation. This research work presents a hybrid approach towards the segmentation of retinal blood vessels. New approaches towards the reduction of background illumination variation are proposed using normalized Gabor filtering. These are the base-offset encoding and a modified version of an existing zero-integral kernel technique. The valley emphasis automatic thresholding scheme is used to segment the Gabor response images. Experiments are conducted on the DRIVE and STARE retinal image data sets. Accuracy rates of up to 94% are achieved through the zero-integral and base offset methods. This is comparable with results from literature, where the same data sets are segmented using other classification techniques. The median-offset method is found to most effectively reduce background illumination variation.

  5. Digital Dental X-Ray Image Segmentation and Feature Extraction

    Directory of Open Access Journals (Sweden)

    Abdolvahab Ehsani Rad

    2013-06-01

    Full Text Available The process of analysis of such images is important in order to improve quantify medical imaging systems. It is significant to analysis the dental x-ray images we need features of image. In this paper we present a method for segmentation and feature extraction of dental x-ray images. The proposed method has been implemented by using level-set method for segmentation after image enhancement and illustrate contour for teeth to complete the segmentation step. Furthermore, we extracted multiple features of dental x-ray images using texture statistics techniques by gray-level co-occurrence matrix. Extracted data can perform to obtain the teeth measurements for automatic dental systems such human identification or dental diagnosis systems. Preparatory experiments show the significance of the proposed method to extract teeth from an x-ray image.

  6. Automatic Story Segmentation for TV News Video Using Multiple Modalities

    Directory of Open Access Journals (Sweden)

    Émilie Dumont

    2012-01-01

    Full Text Available While video content is often stored in rather large files or broadcasted in continuous streams, users are often interested in retrieving only a particular passage on a topic of interest to them. It is, therefore, necessary to split video documents or streams into shorter segments corresponding to appropriate retrieval units. We propose here a method for the automatic segmentation of TV news videos into stories. A-multiple-descriptor based segmentation approach is proposed. The selected multimodal features are complementary and give good insights about story boundaries. Once extracted, these features are expanded with a local temporal context and combined by an early fusion process. The story boundaries are then predicted using machine learning techniques. We investigate the system by experiments conducted using TRECVID 2003 data and protocol of the story boundary detection task, and we show that the proposed approach outperforms the state-of-the-art methods while requiring a very small amount of manual annotation.

  7. Automatic liver tumor segmentation on computed tomography for patient treatment planning and monitoring

    Science.gov (United States)

    Moghbel, Mehrdad; Mashohor, Syamsiah; Mahmud, Rozi; Saripan, M. Iqbal Bin

    2016-01-01

    Segmentation of liver tumors from Computed Tomography (CT) and tumor burden analysis play an important role in the choice of therapeutic strategies for liver diseases and treatment monitoring. In this paper, a new segmentation method for liver tumors from contrast-enhanced CT imaging is proposed. As manual segmentation of tumors for liver treatment planning is both labor intensive and time-consuming, a highly accurate automatic tumor segmentation is desired. The proposed framework is fully automatic requiring no user interaction. The proposed segmentation evaluated on real-world clinical data from patients is based on a hybrid method integrating cuckoo optimization and fuzzy c-means algorithm with random walkers algorithm. The accuracy of the proposed method was validated using a clinical liver dataset containing one of the highest numbers of tumors utilized for liver tumor segmentation containing 127 tumors in total with further validation of the results by a consultant radiologist. The proposed method was able to achieve one of the highest accuracies reported in the literature for liver tumor segmentation compared to other segmentation methods with a mean overlap error of 22.78 % and dice similarity coefficient of 0.75 in 3Dircadb dataset and a mean overlap error of 15.61 % and dice similarity coefficient of 0.81 in MIDAS dataset. The proposed method was able to outperform most other tumor segmentation methods reported in the literature while representing an overlap error improvement of 6 % compared to one of the best performing automatic methods in the literature. The proposed framework was able to provide consistently accurate results considering the number of tumors and the variations in tumor contrast enhancements and tumor appearances while the tumor burden was estimated with a mean error of 0.84 % in 3Dircadb dataset. PMID:27540353

  8. Semiautomatic segmentation of liver metastases on volumetric CT images

    International Nuclear Information System (INIS)

    Purpose: Accurate segmentation and quantification of liver metastases on CT images are critical to surgery/radiation treatment planning and therapy response assessment. To date, there are no reliable methods to perform such segmentation automatically. In this work, the authors present a method for semiautomatic delineation of liver metastases on contrast-enhanced volumetric CT images. Methods: The first step is to manually place a seed region-of-interest (ROI) in the lesion on an image. This ROI will (1) serve as an internal marker and (2) assist in automatically identifying an external marker. With these two markers, lesion contour on the image can be accurately delineated using traditional watershed transformation. Density information will then be extracted from the segmented 2D lesion and help determine the 3D connected object that is a candidate of the lesion volume. The authors have developed a robust strategy to automatically determine internal and external markers for marker-controlled watershed segmentation. By manually placing a seed region-of-interest in the lesion to be delineated on a reference image, the method can automatically determine dual threshold values to approximately separate the lesion from its surrounding structures and refine the thresholds from the segmented lesion for the accurate segmentation of the lesion volume. This method was applied to 69 liver metastases (1.1–10.3 cm in diameter) from a total of 15 patients. An independent radiologist manually delineated all lesions and the resultant lesion volumes served as the “gold standard” for validation of the method’s accuracy. Results: The algorithm received a median overlap, overestimation ratio, and underestimation ratio of 82.3%, 6.0%, and 11.5%, respectively, and a median average boundary distance of 1.2 mm. Conclusions: Preliminary results have shown that volumes of liver metastases on contrast-enhanced CT images can be accurately estimated by a semiautomatic segmentation

  9. Semiautomatic segmentation of liver metastases on volumetric CT images

    Energy Technology Data Exchange (ETDEWEB)

    Yan, Jiayong [Department of Biomedical Engineering, Shanghai University of Medicine & Health Sciences, 101 Yingkou Road, Yang Pu District, Shanghai 200093 (China); Schwartz, Lawrence H.; Zhao, Binsheng, E-mail: bz2166@cumc.columbia.edu [Department of Radiology, Columbia University Medical Center, 630 West 168th Street, New York, New York 10032 (United States)

    2015-11-15

    Purpose: Accurate segmentation and quantification of liver metastases on CT images are critical to surgery/radiation treatment planning and therapy response assessment. To date, there are no reliable methods to perform such segmentation automatically. In this work, the authors present a method for semiautomatic delineation of liver metastases on contrast-enhanced volumetric CT images. Methods: The first step is to manually place a seed region-of-interest (ROI) in the lesion on an image. This ROI will (1) serve as an internal marker and (2) assist in automatically identifying an external marker. With these two markers, lesion contour on the image can be accurately delineated using traditional watershed transformation. Density information will then be extracted from the segmented 2D lesion and help determine the 3D connected object that is a candidate of the lesion volume. The authors have developed a robust strategy to automatically determine internal and external markers for marker-controlled watershed segmentation. By manually placing a seed region-of-interest in the lesion to be delineated on a reference image, the method can automatically determine dual threshold values to approximately separate the lesion from its surrounding structures and refine the thresholds from the segmented lesion for the accurate segmentation of the lesion volume. This method was applied to 69 liver metastases (1.1–10.3 cm in diameter) from a total of 15 patients. An independent radiologist manually delineated all lesions and the resultant lesion volumes served as the “gold standard” for validation of the method’s accuracy. Results: The algorithm received a median overlap, overestimation ratio, and underestimation ratio of 82.3%, 6.0%, and 11.5%, respectively, and a median average boundary distance of 1.2 mm. Conclusions: Preliminary results have shown that volumes of liver metastases on contrast-enhanced CT images can be accurately estimated by a semiautomatic segmentation

  10. Automatic segmentation of brain MRIs and mapping neuroanatomy across the human lifespan

    Science.gov (United States)

    Keihaninejad, Shiva; Heckemann, Rolf A.; Gousias, Ioannis S.; Rueckert, Daniel; Aljabar, Paul; Hajnal, Joseph V.; Hammers, Alexander

    2009-02-01

    A robust model for the automatic segmentation of human brain images into anatomically defined regions across the human lifespan would be highly desirable, but such structural segmentations of brain MRI are challenging due to age-related changes. We have developed a new method, based on established algorithms for automatic segmentation of young adults' brains. We used prior information from 30 anatomical atlases, which had been manually segmented into 83 anatomical structures. Target MRIs came from 80 subjects (~12 individuals/decade) from 20 to 90 years, with equal numbers of men, women; data from two different scanners (1.5T, 3T), using the IXI database. Each of the adult atlases was registered to each target MR image. By using additional information from segmentation into tissue classes (GM, WM and CSF) to initialise the warping based on label consistency similarity before feeding this into the previous normalised mutual information non-rigid registration, the registration became robust enough to accommodate atrophy and ventricular enlargement with age. The final segmentation was obtained by combination of the 30 propagated atlases using decision fusion. Kernel smoothing was used for modelling the structural volume changes with aging. Example linear correlation coefficients with age were, for lateral ventricular volume, rmale=0.76, rfemale=0.58 and, for hippocampal volume, rmale=-0.6, rfemale=-0.4 (allρ<0.01).

  11. Segmentation of Bacteria Image Based on Level Set Method

    Institute of Scientific and Technical Information of China (English)

    WANG Hua; CHEN Chun-xiao; HU Yong-hong; YANG Wen-ge

    2008-01-01

    In biology ferment engineering, accurate statistics of the quantity of bacte-ria is one of the most important subjects. In this paper, the quantity of bacteria which was observed traditionally manuauy can be detected automatically. Image acquisition and pro-cessing system is designed to accomplish image preprocessing, image segmentation and statistics of the quantity of bacteria. Segmentation of bacteria images is successfully real-ized by means of a region-based level set method and then the quantity of bacteria is com-puted precisely, which plays an important role in optimizing the growth conditions of bac-teria.

  12. An efficient conditional random field approach for automatic and interactive neuron segmentation.

    Science.gov (United States)

    Uzunbas, Mustafa Gokhan; Chen, Chao; Metaxas, Dimitris

    2016-01-01

    We present a new graphical-model-based method for automatic and interactive segmentation of neuron structures from electron microscopy (EM) images. For automated reconstruction, our learning based model selects a collection of nodes from a hierarchical merging tree as the proposed segmentation. More specifically, this is achieved by training a conditional random field (CRF) whose underlying graph is the watershed merging tree. The maximum a posteriori (MAP) prediction of the CRF is the output segmentation. Our results are comparable to the results of state-of-the-art methods. Furthermore, both the inference and the training are very efficient as the graph is tree-structured. The problem of neuron segmentation requires extremely high segmentation quality. Therefore, proofreading, namely, interactively correcting mistakes of the automatic method, is a necessary module in the pipeline. Based on our efficient tree-structured inference algorithm, we develop an interactive segmentation framework which only selects locations where the model is uncertain for a user to proofread. The uncertainty is measured by the marginals of the graphical model. Only giving a limited number of choices makes the user interaction very efficient. Based on user corrections, our framework modifies the merging tree and thus improves the segmentation globally. PMID:26210001

  13. Quality assurance using outlier detection on an automatic segmentation method for the cerebellar peduncles

    Science.gov (United States)

    Li, Ke; Ye, Chuyang; Yang, Zhen; Carass, Aaron; Ying, Sarah H.; Prince, Jerry L.

    2016-03-01

    Cerebellar peduncles (CPs) are white matter tracts connecting the cerebellum to other brain regions. Automatic segmentation methods of the CPs have been proposed for studying their structure and function. Usually the performance of these methods is evaluated by comparing segmentation results with manual delineations (ground truth). However, when a segmentation method is run on new data (for which no ground truth exists) it is highly desirable to efficiently detect and assess algorithm failures so that these cases can be excluded from scientific analysis. In this work, two outlier detection methods aimed to assess the performance of an automatic CP segmentation algorithm are presented. The first one is a univariate non-parametric method using a box-whisker plot. We first categorize automatic segmentation results of a dataset of diffusion tensor imaging (DTI) scans from 48 subjects as either a success or a failure. We then design three groups of features from the image data of nine categorized failures for failure detection. Results show that most of these features can efficiently detect the true failures. The second method—supervised classification—was employed on a larger DTI dataset of 249 manually categorized subjects. Four classifiers—linear discriminant analysis (LDA), logistic regression (LR), support vector machine (SVM), and random forest classification (RFC)—were trained using the designed features and evaluated using a leave-one-out cross validation. Results show that the LR performs worst among the four classifiers and the other three perform comparably, which demonstrates the feasibility of automatically detecting segmentation failures using classification methods.

  14. Automatic seagrass pattern identification on sonar images

    Science.gov (United States)

    Rahnemoonfar, Maryam; Rahman, Abdullah

    2016-05-01

    Natural and human-induced disturbances are resulting in degradation and loss of seagrass. Freshwater flooding, severe meteorological events and invasive species are among the major natural disturbances. Human-induced disturbances are mainly due to boat propeller scars in the shallow seagrass meadows and anchor scars in the deeper areas. Therefore, there is a vital need to map seagrass ecosystems in order to determine worldwide abundance and distribution. Currently there is no established method for mapping the pothole or scars in seagrass. One of the most precise sensors to map the seagrass disturbance is side scan sonar. Here we propose an automatic method which detects seagrass potholes in sonar images. Side scan sonar images are notorious for having speckle noise and uneven illumination across the image. Moreover, disturbance presents complex patterns where most segmentation techniques will fail. In this paper, by applying mathematical morphology technique and calculating the local standard deviation of the image, the images were enhanced and the pothole patterns were identified. The proposed method was applied on sonar images taken from Laguna Madre in Texas. Experimental results show the effectiveness of the proposed method.

  15. An Unsupervised Dynamic Image Segmentation using Fuzzy Hopfield Neural Network based Genetic Algorithm

    CERN Document Server

    Halder, Amiya

    2012-01-01

    This paper proposes a Genetic Algorithm based segmentation method that can automatically segment gray-scale images. The proposed method mainly consists of spatial unsupervised grayscale image segmentation that divides an image into regions. The aim of this algorithm is to produce precise segmentation of images using intensity information along with neighborhood relationships. In this paper, Fuzzy Hopfield Neural Network (FHNN) clustering helps in generating the population of Genetic algorithm which there by automatically segments the image. This technique is a powerful method for image segmentation and works for both single and multiple-feature data with spatial information. Validity index has been utilized for introducing a robust technique for finding the optimum number of components in an image. Experimental results shown that the algorithm generates good quality segmented image.

  16. Automatic speech signal segmentation based on the innovation adaptive filter

    Directory of Open Access Journals (Sweden)

    Makowski Ryszard

    2014-06-01

    Full Text Available Speech segmentation is an essential stage in designing automatic speech recognition systems and one can find several algorithms proposed in the literature. It is a difficult problem, as speech is immensely variable. The aim of the authors’ studies was to design an algorithm that could be employed at the stage of automatic speech recognition. This would make it possible to avoid some problems related to speech signal parametrization. Posing the problem in such a way requires the algorithm to be capable of working in real time. The only such algorithm was proposed by Tyagi et al., (2006, and it is a modified version of Brandt’s algorithm. The article presents a new algorithm for unsupervised automatic speech signal segmentation. It performs segmentation without access to information about the phonetic content of the utterances, relying exclusively on second-order statistics of a speech signal. The starting point for the proposed method is time-varying Schur coefficients of an innovation adaptive filter. The Schur algorithm is known to be fast, precise, stable and capable of rapidly tracking changes in second order signal statistics. A transfer from one phoneme to another in the speech signal always indicates a change in signal statistics caused by vocal track changes. In order to allow for the properties of human hearing, detection of inter-phoneme boundaries is performed based on statistics defined on the mel spectrum determined from the reflection coefficients. The paper presents the structure of the algorithm, defines its properties, lists parameter values, describes detection efficiency results, and compares them with those for another algorithm. The obtained segmentation results, are satisfactory.

  17. Metric Learning to Enhance Hyperspectral Image Segmentation

    Science.gov (United States)

    Thompson, David R.; Castano, Rebecca; Bue, Brian; Gilmore, Martha S.

    2013-01-01

    Unsupervised hyperspectral image segmentation can reveal spatial trends that show the physical structure of the scene to an analyst. They highlight borders and reveal areas of homogeneity and change. Segmentations are independently helpful for object recognition, and assist with automated production of symbolic maps. Additionally, a good segmentation can dramatically reduce the number of effective spectra in an image, enabling analyses that would otherwise be computationally prohibitive. Specifically, using an over-segmentation of the image instead of individual pixels can reduce noise and potentially improve the results of statistical post-analysis. In this innovation, a metric learning approach is presented to improve the performance of unsupervised hyperspectral image segmentation. The prototype demonstrations attempt a superpixel segmentation in which the image is conservatively over-segmented; that is, the single surface features may be split into multiple segments, but each individual segment, or superpixel, is ensured to have homogenous mineralogy.

  18. Semi-automatic segmentation and detection of aorta dissection wall in MDCT angiography.

    Science.gov (United States)

    Krissian, Karl; Carreira, Jose M; Esclarin, Julio; Maynar, Manuel

    2014-01-01

    Aorta dissection is a serious vascular disease produced by a rupture of the tunica intima of the vessel wall that can be lethal to the patient. The related diagnosis is strongly based on images, where the multi-detector CT is the most generally used modality. We aim at developing a semi-automatic segmentation tool for aorta dissections, which will isolate the dissection (or flap) from the rest of the vascular structure. The proposed method is based on different stages, the first one being the semi-automatic extraction of the aorta centerline and its main branches, allowing an subsequent automatic segmentation of the outer wall of the aorta, based on a geodesic level set framework. This segmentation is then followed by an extraction the center of the dissected wall as a 3D mesh using an original algorithm based on the zero crossing of two vector fields. Our method has been applied to five datasets from three patients with chronic aortic dissection. The comparison with manually segmented dissections shows an average absolute distance value of about half a voxel. We believe that the proposed method, which tries to solve a problem that has attracted little attention to the medical image processing community, provides a new and interesting tool to isolate the intimal flap that can provide very useful information to the clinician. PMID:24161795

  19. Super pixel density based clustering automatic image classification method

    Science.gov (United States)

    Xu, Mingxing; Zhang, Chuan; Zhang, Tianxu

    2015-12-01

    The image classification is an important means of image segmentation and data mining, how to achieve rapid automated image classification has been the focus of research. In this paper, based on the super pixel density of cluster centers algorithm for automatic image classification and identify outlier. The use of the image pixel location coordinates and gray value computing density and distance, to achieve automatic image classification and outlier extraction. Due to the increased pixel dramatically increase the computational complexity, consider the method of ultra-pixel image preprocessing, divided into a small number of super-pixel sub-blocks after the density and distance calculations, while the design of a normalized density and distance discrimination law, to achieve automatic classification and clustering center selection, whereby the image automatically classify and identify outlier. After a lot of experiments, our method does not require human intervention, can automatically categorize images computing speed than the density clustering algorithm, the image can be effectively automated classification and outlier extraction.

  20. Cellular image segmentation using n-agent cooperative game theory

    Science.gov (United States)

    Dimock, Ian B.; Wan, Justin W. L.

    2016-03-01

    Image segmentation is an important problem in computer vision and has significant applications in the segmentation of cellular images. Many different imaging techniques exist and produce a variety of image properties which pose difficulties to image segmentation routines. Bright-field images are particularly challenging because of the non-uniform shape of the cells, the low contrast between cells and background, and imaging artifacts such as halos and broken edges. Classical segmentation techniques often produce poor results on these challenging images. Previous attempts at bright-field imaging are often limited in scope to the images that they segment. In this paper, we introduce a new algorithm for automatically segmenting cellular images. The algorithm incorporates two game theoretic models which allow each pixel to act as an independent agent with the goal of selecting their best labelling strategy. In the non-cooperative model, the pixels choose strategies greedily based only on local information. In the cooperative model, the pixels can form coalitions, which select labelling strategies that benefit the entire group. Combining these two models produces a method which allows the pixels to balance both local and global information when selecting their label. With the addition of k-means and active contour techniques for initialization and post-processing purposes, we achieve a robust segmentation routine. The algorithm is applied to several cell image datasets including bright-field images, fluorescent images and simulated images. Experiments show that the algorithm produces good segmentation results across the variety of datasets which differ in cell density, cell shape, contrast, and noise levels.

  1. 3D automatic anatomy segmentation based on iterative graph-cut-ASM

    OpenAIRE

    Chen, Xinjian; Bagci, Ulas

    2011-01-01

    Purpose: This paper studies the feasibility of developing an automatic anatomy segmentation (AAS) system in clinical radiology and demonstrates its operation on clinical 3D images.Methods: The AAS system, the authors are developing consists of two main parts: object recognition and object delineation. As for recognition, a hierarchical 3D scale-based multiobject method is used for the multiobject recognition task, which incorporates intensity weighted ball-scale (b-scale) information into the...

  2. Automatic Tooth Segmentation of Dental Mesh Based on Harmonic Fields

    Directory of Open Access Journals (Sweden)

    Sheng-hui Liao

    2015-01-01

    Full Text Available An important preprocess in computer-aided orthodontics is to segment teeth from the dental models accurately, which should involve manual interactions as few as possible. But fully automatic partition of all teeth is not a trivial task, since teeth occur in different shapes and their arrangements vary substantially from one individual to another. The difficulty is exacerbated when severe teeth malocclusion and crowding problems occur, which is a common occurrence in clinical cases. Most published methods in this area either are inaccurate or require lots of manual interactions. Motivated by the state-of-the-art general mesh segmentation methods that adopted the theory of harmonic field to detect partition boundaries, this paper proposes a novel, dental-targeted segmentation framework for dental meshes. With a specially designed weighting scheme and a strategy of a priori knowledge to guide the assignment of harmonic constraints, this method can identify teeth partition boundaries effectively. Extensive experiments and quantitative analysis demonstrate that the proposed method is able to partition high-quality teeth automatically with robustness and efficiency.

  3. Automatic Tooth Segmentation of Dental Mesh Based on Harmonic Fields.

    Science.gov (United States)

    Liao, Sheng-hui; Liu, Shi-jian; Zou, Bei-ji; Ding, Xi; Liang, Ye; Huang, Jun-hui

    2015-01-01

    An important preprocess in computer-aided orthodontics is to segment teeth from the dental models accurately, which should involve manual interactions as few as possible. But fully automatic partition of all teeth is not a trivial task, since teeth occur in different shapes and their arrangements vary substantially from one individual to another. The difficulty is exacerbated when severe teeth malocclusion and crowding problems occur, which is a common occurrence in clinical cases. Most published methods in this area either are inaccurate or require lots of manual interactions. Motivated by the state-of-the-art general mesh segmentation methods that adopted the theory of harmonic field to detect partition boundaries, this paper proposes a novel, dental-targeted segmentation framework for dental meshes. With a specially designed weighting scheme and a strategy of a priori knowledge to guide the assignment of harmonic constraints, this method can identify teeth partition boundaries effectively. Extensive experiments and quantitative analysis demonstrate that the proposed method is able to partition high-quality teeth automatically with robustness and efficiency. PMID:26413507

  4. Automated image segmentation of haematoxylin and eosin stained skeletal muscle cross-sections

    DEFF Research Database (Denmark)

    Liu, F; Mackey, AL; Srikuea, R;

    2013-01-01

    . This procedure is labour-intensive and time-consuming. In this paper, we have developed and validated an automatic image segmentation algorithm that is not only efficient but also accurate. Our proposed automatic segmentation algorithm for haematoxylin and eosin stained skeletal muscle cross-sections consists...

  5. 基于自适应图像分割自动提取道路中心线%The automatic road centerline extraction based on adaptive image segmentation

    Institute of Scientific and Technical Information of China (English)

    汤瑞华

    2015-01-01

    道路是城区地理空间信息中最重要的基础设施之一,从高分辨影像中自动、快速的提取道路特征,是快速更新城市道路网信息的重要途径。文中在分析道路基本特征的基础上,选择基于自适应结构元素的形态分析算法提取初始道路区域;引入面积和长宽比等形状指数,得到较精确的道路信息;最后,采用Hilditch细化算法,并进行优化处理。实验证明,该道路提取过程中无需人工设置参数,且能够得到具有较高完整性和正确性的道路中心线。%The road is one of the most important infrastructures in urban geospatial information .Automatic and fast road extraction from high resolution image is an important way of updating the urban road network fast .Thus a new automatic method is proposed to extract the road feature .First ,the adaptive structure element is adopted in the image segmentation .And then ,the precise road features can be extracted under the constrains of area and length‐breadth ratio (referred to as L/B) .Final ,the road line is obtained by using Hilditch algorithm and optimizing process .The experiments indicate that the road extraction without artificial set parameters in the process can get the centerline of the road with high completeness and correctness .

  6. SEGMENTACIÓN SEMIAUTOMÁTICA DEL VOLUMEN DEL HÍGADO EN IMÁGENES DE TOMOGRAFÍA COMPUTARIZADA Semi-Automatic Liver Volume Segmentation in Computed Tomography Images

    Directory of Open Access Journals (Sweden)

    GERARDO TIBAMOSO

    Full Text Available El volumen del hígado es un parámetro determinante en cirugía para la extracción de tumores, trasplantes, y en tratamientos de regeneración. Generalmente, la estimación de este volumen se calcula a partir de segmentaciones manuales realizadas por especialistas, siendo éste un proceso tedioso y con poca reproducibilidad de sus resultados. En este trabajo se presenta un método semiautomático para la segmentación del volumen del hígado en imágenes de TAC. El método consiste en superponer manualmente una superficie de triángulos en las imágenes, y deformarla por medio de una ecuación de movimiento asociada a cada uno de sus vértices, para delimitar las fronteras del hígado. La dinámica de la superficie depende de información de intensidades y gradientes, y de relaciones de vecindad entre los vértices, hasta cumplir un número de iteraciones. Comparaciones entre las segmentaciones del método con las segmentaciones de referencia en 20 estudios de TAC, muestran la adaptabilidad de la superficie a la forma y fronteras difusas del hígado, dos de los principales problemas de la segmentación.Liver volume is a significant parameter in surgery for tumor extraction, transplants, and regeneration treatments. Generally, the volume estimation is obtained from manual segmentations performed by specialists, resulting in a tedious process with low reproducibility. In this work a semi-automatic method for the liver volume segmentation in CT images is presented. The method consist in manually superimpose a triangular surface on the images, and use a movement equation associated to each vertex to deform the surface and delimit the liver boundaries. Surface dynamics depend on intensity and gradient information, and neighboring relationships between vertices, until a fixed number of iterations is reached. Comparison between the obtained results and reference segmentations in 20 CT scans, show the surface adaptability to the shape and the diffuse

  7. An Automatic Optic Disk Detection and Segmentation System using Multi-level Thresholding

    OpenAIRE

    KARASULU, B.

    2014-01-01

    Optic disk (OD) boundary localization is a substantial problem in ophthalmic image processing research area. In order to segment the region of OD, we developed an automatic system which involves a multi-level thresholding. The OD segmentation results of the system in terms of average precision, recall and accuracy for DRIVE database are 98.88%, 99.91%, 98.83%, for STARE database are 98.62%, 97.38%, 96.11%, and for DIARETDB1 database are 99.29%, 99.90%, 99.20%, respectively. Th...

  8. Plugin procedure in segmentation and application to hyperspectral image segmentation

    OpenAIRE

    Girard, R

    2010-01-01

    In this article we give our contribution to the problem of segmentation with plug-in procedures. We give general sufficient conditions under which plug in procedure are efficient. We also give an algorithm that satisfy these conditions. We give an application of the used algorithm to hyperspectral images segmentation. Hyperspectral images are images that have both spatial and spectral coherence with thousands of spectral bands on each pixel. In the proposed procedure we combine a reduction di...

  9. UMLS-based automatic image indexing.

    Science.gov (United States)

    Sneiderman, C; Sneiderman, Charles Alan; Demner-Fushman, D; Demner-Fushman, Dina; Fung, K W; Fung, Kin Wah; Bray, B; Bray, Bruce

    2008-01-01

    To date, most accurate image retrieval techniques rely on textual descriptions of images. Our goal is to automatically generate indexing terms for an image extracted from a biomedical article by identifying Unified Medical Language System (UMLS) concepts in image caption and its discussion in the text. In a pilot evaluation of the suggested image indexing method by five physicians, a third of the automatically identified index terms were found suitable for indexing.

  10. An Active Contour for Range Image Segmentation

    Directory of Open Access Journals (Sweden)

    Khaldi Amine

    2012-06-01

    Full Text Available In this paper a new classification of range image segmentation method is proposed according to the criterion of homogeneity which obeys the segmentation, then, a deformable model-type active contour “Snake” is applied to segment range images.

  11. An Active Contour for Range Image Segmentation

    Directory of Open Access Journals (Sweden)

    Khaldi Amine

    2012-07-01

    Full Text Available In this paper a new classification of range image segmentation method is proposed according to the criterion of homogeneity which obeys the segmentation, then, a deformable model-type active contour “Snake” is applied to segment range images.

  12. New approach to the automatic segmentation of coronary artery in X-ray angiograms

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    For the segmentation of X-ray angiograms (XRA), the essential feature and the prior knowledge of angiographic image were analyzed, and a multi-feature based fuzzy recognition (MFFR) algorithm was proposed to infer the local vessel structure in this paper. Guided by the prior knowledge of artery vessel, a probability tracking operator (PTO) can rapidly track along the artery tree, and walk across the weak region or gaps because of disturbance or preprocessing to angiographic image. Another, the accurate measurement of the vascular axis-lines and diameters can be synchronously implemented in the tracking process. To correctly evaluate the proposed method, a simulated image of CAT and some clinical XRA images were used in the experimentations. The algorithms performed better than the conventional one: given one start-point, on average 92.7% of the visible segments or branches was automatically delineated; the correctness ratio of vessel structure inference reached to 90.0% on the average.

  13. Image Models for Segmentation and Recognition

    OpenAIRE

    Heiler, Matthias

    2006-01-01

    We examine image models for segmentation and classification that are based (i) on the statistical properties of natural images and (ii) on non-negative matrix or tensor codes. Regarding (i) we derive a parametric framework for variational image segmentation. Using a model for the filter response statistics of natural images we build a sound probabilistic distance measure that drives level sets toward meaningful segmentations of complex textures and natural scenes. We show that the approach ca...

  14. Unsupervised Neural Techniques Applied to MR Brain Image Segmentation

    Directory of Open Access Journals (Sweden)

    A. Ortiz

    2012-01-01

    Full Text Available The primary goal of brain image segmentation is to partition a given brain image into different regions representing anatomical structures. Magnetic resonance image (MRI segmentation is especially interesting, since accurate segmentation in white matter, grey matter and cerebrospinal fluid provides a way to identify many brain disorders such as dementia, schizophrenia or Alzheimer’s disease (AD. Then, image segmentation results in a very interesting tool for neuroanatomical analyses. In this paper we show three alternatives to MR brain image segmentation algorithms, with the Self-Organizing Map (SOM as the core of the algorithms. The procedures devised do not use any a priori knowledge about voxel class assignment, and results in fully-unsupervised methods for MRI segmentation, making it possible to automatically discover different tissue classes. Our algorithm has been tested using the images from the Internet Brain Image Repository (IBSR outperforming existing methods, providing values for the average overlap metric of 0.7 for the white and grey matter and 0.45 for the cerebrospinal fluid. Furthermore, it also provides good results for high-resolution MR images provided by the Nuclear Medicine Service of the “Virgen de las Nieves” Hospital (Granada, Spain.

  15. Automatic system for detecting pornographic images

    Science.gov (United States)

    Ho, Kevin I. C.; Chen, Tung-Shou; Ho, Jun-Der

    2002-09-01

    Due to the dramatic growth of network and multimedia technology, people can more easily get variant information by using Internet. Unfortunately, it also makes the diffusion of illegal and harmful content much easier. So, it becomes an important topic for the Internet society to protect and safeguard Internet users from these content that may be encountered while surfing on the Net, especially children. Among these content, porno graphs cause more serious harm. Therefore, in this study, we propose an automatic system to detect still colour porno graphs. Starting from this result, we plan to develop an automatic system to search porno graphs or to filter porno graphs. Almost all the porno graphs possess one common characteristic that is the ratio of the size of skin region and non-skin region is high. Based on this characteristic, our system first converts the colour space from RGB colour space to HSV colour space so as to segment all the possible skin-colour regions from scene background. We also apply the texture analysis on the selected skin-colour regions to separate the skin regions from non-skin regions. Then, we try to group the adjacent pixels located in skin regions. If the ratio is over a given threshold, we can tell if the given image is a possible porno graph. Based on our experiment, less than 10% of non-porno graphs are classified as pornography, and over 80% of the most harmful porno graphs are classified correctly.

  16. Automatic Speech Segmentation Based On Audio and Optical Flow Visual Classification

    Directory of Open Access Journals (Sweden)

    Behnam Torabi

    2014-10-01

    Full Text Available Automatic speech segmentation as an important part of speech recognition system (ASR is highly noise dependent. Noise is made by changes in the communication channel, background, level of speaking etc. In recent years, many researchers have proposed noise cancelation techniques and have added visual features from speaker’s face to reduce the effect of noise on ASR systems. Removing noise from audio signals depends on the type of the noise; so it cannot be used as a general solution. Adding visual features improve this lack of efficiency, but advanced methods of this type need manual extraction of visual features. In this paper we propose a completely automatic system which uses optical flow vectors from speaker’s image sequence to obtain visual features. Then, Hidden Markov Models are trained to segment audio signals from image sequences and audio features based on extracted optical flow. The developed segmentation system based on such method acts totally automatic and become more robust to noise.

  17. Automated Drusen Segmentation and Quantification in SD-OCT Images

    OpenAIRE

    Chen, Qiang; Leng, Theodore; Zheng, Luoluo; Kutzscher, Lauren; Ma, Jeffrey; de Sisternes, Luis; Rubin, Daniel L.

    2013-01-01

    Spectral domain optical coherence tomography (SD-OCT) is a useful tool for the visualization of drusen, a retinal abnormality seen in patients with age-related macular degeneration (AMD); however, objective assessment of drusen is thwarted by the lack of a method to robustly quantify these lesions on serial OCT images. Here, we describe an automatic drusen segmentation method for SD-OCT retinal images, which leverages a priori knowledge of normal retinal morphology and anatomical features. Th...

  18. BgCut: automatic ship detection from UAV images.

    Science.gov (United States)

    Xu, Chao; Zhang, Dongping; Zhang, Zhengning; Feng, Zhiyong

    2014-01-01

    Ship detection in static UAV aerial images is a fundamental challenge in sea target detection and precise positioning. In this paper, an improved universal background model based on Grabcut algorithm is proposed to segment foreground objects from sea automatically. First, a sea template library including images in different natural conditions is built to provide an initial template to the model. Then the background trimap is obtained by combing some templates matching with region growing algorithm. The output trimap initializes Grabcut background instead of manual intervention and the process of segmentation without iteration. The effectiveness of our proposed model is demonstrated by extensive experiments on a certain area of real UAV aerial images by an airborne Canon 5D Mark. The proposed algorithm is not only adaptive but also with good segmentation. Furthermore, the model in this paper can be well applied in the automated processing of industrial images for related researches.

  19. BgCut: automatic ship detection from UAV images.

    Science.gov (United States)

    Xu, Chao; Zhang, Dongping; Zhang, Zhengning; Feng, Zhiyong

    2014-01-01

    Ship detection in static UAV aerial images is a fundamental challenge in sea target detection and precise positioning. In this paper, an improved universal background model based on Grabcut algorithm is proposed to segment foreground objects from sea automatically. First, a sea template library including images in different natural conditions is built to provide an initial template to the model. Then the background trimap is obtained by combing some templates matching with region growing algorithm. The output trimap initializes Grabcut background instead of manual intervention and the process of segmentation without iteration. The effectiveness of our proposed model is demonstrated by extensive experiments on a certain area of real UAV aerial images by an airborne Canon 5D Mark. The proposed algorithm is not only adaptive but also with good segmentation. Furthermore, the model in this paper can be well applied in the automated processing of industrial images for related researches. PMID:24977182

  20. A supervised texton based approach for automatic segmentation and measurement of the fetal head and femur in 2D ultrasound images

    Science.gov (United States)

    Zhang, Lei; Ye, Xujiong; Lambrou, Tryphon; Duan, Wenting; Allinson, Nigel; Dudley, Nicholas J.

    2016-02-01

    This paper presents a supervised texton based approach for the accurate segmentation and measurement of ultrasound fetal head (BPD, OFD, HC) and femur (FL). The method consists of several steps. First, a non-linear diffusion technique is utilized to reduce the speckle noise. Then, based on the assumption that cross sectional intensity profiles of skull and femur can be approximated by Gaussian-like curves, a multi-scale and multi-orientation filter bank is designed to extract texton features specific to ultrasound fetal anatomic structure. The extracted texton cues, together with multi-scale local brightness, are then built into a unified framework for boundary detection of ultrasound fetal head and femur. Finally, for fetal head, a direct least square ellipse fitting method is used to construct a closed head contour, whilst, for fetal femur a closed contour is produced by connecting the detected femur boundaries. The presented method is demonstrated to be promising for clinical applications. Overall the evaluation results of fetal head segmentation and measurement from our method are comparable with the inter-observer difference of experts, with the best average precision of 96.85%, the maximum symmetric contour distance (MSD) of 1.46 mm, average symmetric contour distance (ASD) of 0.53 mm while for fetal femur, the overall performance of our method is better than the inter-observer difference of experts, with the average precision of 84.37%, MSD of 2.72 mm and ASD of 0.31 mm.

  1. Automatic segmentation of white matter hyperintensities robust to multicentre acquisition and pathological variability

    Science.gov (United States)

    Samaille, T.; Colliot, O.; Cuingnet, R.; Jouvent, E.; Chabriat, H.; Dormont, D.; Chupin, M.

    2012-02-01

    White matter hyperintensities (WMH), commonly seen on FLAIR images in elderly people, are a risk factor for dementia onset and have been associated with motor and cognitive deficits. We present here a method to fully automatically segment WMH from T1 and FLAIR images. Iterative steps of non linear diffusion followed by watershed segmentation were applied on FLAIR images until convergence. Diffusivity function and associated contrast parameter were carefully designed to adapt to WMH segmentation. It resulted in piecewise constant images with enhanced contrast between lesions and surrounding tissues. Selection of WMH areas was based on two characteristics: 1) a threshold automatically computed for intensity selection, 2) main location of areas in white matter. False positive areas were finally removed based on their proximity with cerebrospinal fluid/grey matter interface. Evaluation was performed on 67 patients: 24 with amnestic mild cognitive impairment (MCI), from five different centres, and 43 with Cerebral Autosomal Dominant Arteriopathy with Subcortical Infarcts and Leukoaraiosis (CADASIL) acquired in a single centre. Results showed excellent volume agreement with manual delineation (Pearson coefficient: r=0.97, p<0.001) and substantial spatial correspondence (Similarity Index: 72%+/-16%). Our method appeared robust to acquisition differences across the centres as well as to pathological variability.

  2. AUTOMATIC SEGMENTATION AND STRUCTURAL CHARACTERIZATION OF LOW DENSITY FIBREBOARDS

    Directory of Open Access Journals (Sweden)

    Jérôme Lux

    2013-03-01

    Full Text Available In this paper, a new skeleton-based algorithm for the segmentation of individual fibres in 3D tomographic images is described. The proposed method is designed to deal with low density materials featuring fibres with varied sizes, shapes and tortuosities, like composite fibreboards used for buildings insulation. To this end the paths of the skeleton are first classified according to their connectivity, the connectivity of their adjacent nodes, their orientation, their average radius and the variation of the distance transform along each path. This allows for the identification of spurious paths and paths linking two fibres. Reconstruction of the path of the fibres is done thanks to an optimal pairing algorithm which joins paths that show the most similar orientation and radius at each node/link. The segmented skeleton is finally dilated by means of a growing algorithm ordonned by the average radius of the fibres in order to reconstruct each identified fibres. As an application, the algorithm is used to segment a 3D tomographic image of hemp/polymer fibreboard for buildings insulation. Information such as the number of contacts, tortuosity, length, average radius, orientation of fibres are finally measured on both the segmented skeleton and reconstructed image, which allow for a thorough characterization of the fibre network.

  3. Fingerprint Image Enhancement:Segmentation to Thinning

    Directory of Open Access Journals (Sweden)

    Iwasokun Gabriel Babatunde

    2012-01-01

    Full Text Available Fingerprint has remained a very vital index for human recognition. In the field of security, series of Automatic Fingerprint Identification Systems (AFIS have been developed. One of the indices for evaluating the contributions of these systems to the enforcement of security is the degree with which they appropriately verify or identify input fingerprints. This degree is generally determined by the quality of the fingerprint images and the efficiency of the algorithm. In this paper, some of the sub-models of an existing mathematical algorithm for the fingerprint image enhancement were modified to obtain new and improved versions. The new versions consist of different mathematical models for fingerprint image segmentation, normalization, ridge orientation estimation, ridge frequency estimation, Gabor filtering, binarization and thinning. The implementation was carried out in an environment characterized by Window Vista Home Basic operating system as platform and Matrix Laboratory (MatLab as frontend engine. Synthetic images as well as real fingerprints obtained from the FVC2004 fingerprint database DB3 set A were used to test the adequacy of the modified sub-models and the resulting algorithm. The results show that the modified sub-models perform well with significant improvement over the original versions. The results also show the necessity of each level of the enhancement.

  4. Research on automatic segmentation of agricultural land and artificial buildings in remote sensing image%遥感图像中农用地与人工建筑自动分割技术研究

    Institute of Scientific and Technical Information of China (English)

    王敏彦; 赵坤

    2015-01-01

    以农业用地与人工建筑的分割为研究目的,提出一种可在卫星或航拍遥感图像中自动分割农用田地与人工建筑的图像处理算法。该算法使用图像区域合成、滤波、灰度统计、背景分割等处理技术,可实现大面积农用田地中人工建筑及道路的分割,并给出面积的估算。在此给出了解决思路,并给出试验效果。该技术对提高农地统计自动化水平、农业用地侵占普查效率有一定工程意义。%An image processing algorithm which can automatically divide up agricultural fields and artificial buildings in re⁃mote sensing images from satellite or aerial photo is proposed. With the technologies of image area synthesis,filtering,histo⁃gram statistics and background segmentation,the artificial buildings and roads in large⁃scale agricultural lands can be segment⁃ed by the algorithm,and the area calculation can be realized. Some solutions and test results are given in this paper. It is signifi⁃cant for this algorithm to improve the automation statistic level of agricultural land.

  5. Robust Machine Learning-Based Correction on Automatic Segmentation of the Cerebellum and Brainstem.

    Directory of Open Access Journals (Sweden)

    Jun Yi Wang

    Full Text Available Automated segmentation is a useful method for studying large brain structures such as the cerebellum and brainstem. However, automated segmentation may lead to inaccuracy and/or undesirable boundary. The goal of the present study was to investigate whether SegAdapter, a machine learning-based method, is useful for automatically correcting large segmentation errors and disagreement in anatomical definition. We further assessed the robustness of the method in handling size of training set, differences in head coil usage, and amount of brain atrophy. High resolution T1-weighted images were acquired from 30 healthy controls scanned with either an 8-channel or 32-channel head coil. Ten patients, who suffered from brain atrophy because of fragile X-associated tremor/ataxia syndrome, were scanned using the 32-channel head coil. The initial segmentations of the cerebellum and brainstem were generated automatically using Freesurfer. Subsequently, Freesurfer's segmentations were both manually corrected to serve as the gold standard and automatically corrected by SegAdapter. Using only 5 scans in the training set, spatial overlap with manual segmentation in Dice coefficient improved significantly from 0.956 (for Freesurfer segmentation to 0.978 (for SegAdapter-corrected segmentation for the cerebellum and from 0.821 to 0.954 for the brainstem. Reducing the training set size to 2 scans only decreased the Dice coefficient ≤0.002 for the cerebellum and ≤ 0.005 for the brainstem compared to the use of training set size of 5 scans in corrective learning. The method was also robust in handling differences between the training set and the test set in head coil usage and the amount of brain atrophy, which reduced spatial overlap only by <0.01. These results suggest that the combination of automated segmentation and corrective learning provides a valuable method for accurate and efficient segmentation of the cerebellum and brainstem, particularly in large

  6. Clinical Evaluation of a Fully-automatic Segmentation Method for Longitudinal Brain Tumor Volumetry

    Science.gov (United States)

    Meier, Raphael; Knecht, Urspeter; Loosli, Tina; Bauer, Stefan; Slotboom, Johannes; Wiest, Roland; Reyes, Mauricio

    2016-01-01

    Information about the size of a tumor and its temporal evolution is needed for diagnosis as well as treatment of brain tumor patients. The aim of the study was to investigate the potential of a fully-automatic segmentation method, called BraTumIA, for longitudinal brain tumor volumetry by comparing the automatically estimated volumes with ground truth data acquired via manual segmentation. Longitudinal Magnetic Resonance (MR) Imaging data of 14 patients with newly diagnosed glioblastoma encompassing 64 MR acquisitions, ranging from preoperative up to 12 month follow-up images, was analysed. Manual segmentation was performed by two human raters. Strong correlations (R = 0.83–0.96, p < 0.001) were observed between volumetric estimates of BraTumIA and of each of the human raters for the contrast-enhancing (CET) and non-enhancing T2-hyperintense tumor compartments (NCE-T2). A quantitative analysis of the inter-rater disagreement showed that the disagreement between BraTumIA and each of the human raters was comparable to the disagreement between the human raters. In summary, BraTumIA generated volumetric trend curves of contrast-enhancing and non-enhancing T2-hyperintense tumor compartments comparable to estimates of human raters. These findings suggest the potential of automated longitudinal tumor segmentation to substitute manual volumetric follow-up of contrast-enhancing and non-enhancing T2-hyperintense tumor compartments. PMID:27001047

  7. Automatic analysis of double coronal mass ejections from coronagraph images

    Science.gov (United States)

    Jacobs, Matthew; Chang, Lin-Ching; Pulkkinen, Antti; Romano, Michelangelo

    2015-11-01

    Coronal mass ejections (CMEs) can have major impacts on man-made technology and humans, both in space and on Earth. These impacts have created a high interest in the study of CMEs in an effort to detect and track events and forecast the CME arrival time to provide time for proper mitigation. A robust automatic real-time CME processing pipeline is greatly desired to avoid laborious and subjective manual processing. Automatic methods have been proposed to segment CMEs from coronagraph images and estimate CME parameters such as their heliocentric location and velocity. However, existing methods suffered from several shortcomings such as the use of hard thresholding and an inability to handle two or more CMEs occurring within the same coronagraph image. Double-CME analysis is a necessity for forecasting the many CME events that occur within short time frames. Robust forecasts for all CME events are required to fully understand space weather impacts. This paper presents a new method to segment CME masses and pattern recognition approaches to differentiate two CMEs in a single coronagraph image. The proposed method is validated on a data set of 30 halo CMEs, with results showing comparable ability in transient arrival time prediction accuracy and the new ability to automatically predict the arrival time of a double-CME event. The proposed method is the first automatic method to successfully calculate CME parameters from double-CME events, making this automatic method applicable to a wider range of CME events.

  8. Automatic and Manual Segmentation of Hippocampus in Epileptic Patients MRI

    CERN Document Server

    Hosseini, Mohammad-Parsa; Pompili, Dario; Jafari-Khouzani, Kourosh; Elisevich, Kost; Soltanian-Zadeh, Hamid

    2016-01-01

    The hippocampus is a seminal structure in the most common surgically-treated form of epilepsy. Accurate segmentation of the hippocampus aids in establishing asymmetry regarding size and signal characteristics in order to disclose the likely site of epileptogenicity. With sufficient refinement, it may ultimately aid in the avoidance of invasive monitoring with its expense and risk for the patient. To this end, a reliable and consistent method for segmentation of the hippocampus from magnetic resonance imaging (MRI) is needed. In this work, we present a systematic and statistical analysis approach for evaluation of automated segmentation methods in order to establish one that reliably approximates the results achieved by manual tracing of the hippocampus.

  9. Image segmentation with a finite element method

    DEFF Research Database (Denmark)

    Bourdin, Blaise

    1999-01-01

    The Mumford-Shah functional for image segmentation is an original approach of the image segmentation problem, based on a minimal energy criterion. Its minimization can be seen as a free discontinuity problem and is based on \\Gamma-convergence and bounded variation functions theories.Some new...... numerical results, computed from both artificial and real images are presented and discussed....

  10. Image Segmentation Using Hierarchical Merge Tree

    Science.gov (United States)

    Liu, Ting; Seyedhosseini, Mojtaba; Tasdizen, Tolga

    2016-10-01

    This paper investigates one of the most fundamental computer vision problems: image segmentation. We propose a supervised hierarchical approach to object-independent image segmentation. Starting with over-segmenting superpixels, we use a tree structure to represent the hierarchy of region merging, by which we reduce the problem of segmenting image regions to finding a set of label assignment to tree nodes. We formulate the tree structure as a constrained conditional model to associate region merging with likelihoods predicted using an ensemble boundary classifier. Final segmentations can then be inferred by finding globally optimal solutions to the model efficiently. We also present an iterative training and testing algorithm that generates various tree structures and combines them to emphasize accurate boundaries by segmentation accumulation. Experiment results and comparisons with other very recent methods on six public data sets demonstrate that our approach achieves the state-of-the-art region accuracy and is very competitive in image segmentation without semantic priors.

  11. Automatic segmentation of histological structures in mammary gland tissue sections

    Energy Technology Data Exchange (ETDEWEB)

    Fernandez-Gonzalez, Rodrigo; Deschamps, Thomas; Idica, Adam K.; Malladi, Ravikanth; Ortiz de Solorzano, Carlos

    2004-02-17

    Real-time three-dimensional (3D) reconstruction of epithelial structures in human mammary gland tissue blocks mapped with selected markers would be an extremely helpful tool for breast cancer diagnosis and treatment planning. Besides its clear clinical application, this tool could also shed a great deal of light on the molecular basis of breast cancer initiation and progression. In this paper we present a framework for real-time segmentation of epithelial structures in two-dimensional (2D) images of sections of normal and neoplastic mammary gland tissue blocks. Complete 3D rendering of the tissue can then be done by surface rendering of the structures detected in consecutive sections of the blocks. Paraffin embedded or frozen tissue blocks are first sliced, and sections are stained with Hematoxylin and Eosin. The sections are then imaged using conventional bright field microscopy and their background is corrected using a phantom image. We then use the Fast-Marching algorithm to roughly extract the contours of the different morphological structures in the images. The result is then refined with the Level-Set method which converges to an accurate (sub-pixel) solution for the segmentation problem. Finally, our system stacks together the 2D results obtained in order to reconstruct a 3D representation of the entire tissue block under study. Our method is illustrated with results from the segmentation of human and mouse mammary gland tissue samples.

  12. Core Recursive Hierarchical Image Segmentation

    Science.gov (United States)

    Tilton, James

    2011-01-01

    The Recursive Hierarchical Image Segmentation (RHSEG) software has been repackaged to provide a version of the RHSEG software that is not subject to patent restrictions and that can be released to the general public through NASA GSFC's Open Source release process. Like the Core HSEG Software Package, this Core RHSEG Software Package also includes a visualization program called HSEGViewer along with a utility program HSEGReader. It also includes an additional utility program called HSEGExtract. The unique feature of the Core RHSEG package is that it is a repackaging of the RHSEG technology designed to specifically avoid the inclusion of the certain software technology. Unlike the Core HSEG package, it includes the recursive portions of the technology, but does not include processing window artifact elimination technology.

  13. 基于分块采样和遗传算法的自动多阈值图像分割%Automatic Multilevel Thresholding for Image Segmentation Based on Block Sampling and Genetic Algorithm

    Institute of Scientific and Technical Information of China (English)

    姜允志; 郝志峰; 林智勇; 袁淦钊

    2011-01-01

    图像多阈值分割在图像压缩、图像分析和模式识别等很多领域具有重要应用,但是阈值数的自动选择一直是至今未解决的难题.为此,基于分块采样和遗传算法提出一种自动多阈值图像分割算法.首先将一幅图像看成是由像素值组成的总体,运用分块采样得到若干子样本;其次在每一个子样本中运用遗传算法来使样本的均值与方差比极大化;再基于获得的样本信息对阈值数目和阈值进行自动预测;最后利用一种确定性的算法对阈值数和阈值做进一步的优化.该算法无需事先考虑图像的纹理和分割数等先验信息,具有较高的易用性,其计算复杂性对图像阈值个数敏感性较低,且无需进行灰度直方图分析.在Berkeley图像分割数据集上的大量仿真实验结果表明,文中算法能获得较准确、快速和稳定的图像分割.%Multilevel thresholding is an important technique for image compression, image analysis and pattern recognition. However, it is a hard problem to determine the number of thresholds automatically. In this paper, a new multilevel thresholding method called as automatic multilevel thresholding algorithm for image segmentation based on block sampling and genetic algorithm (AMT-BSGA) is proposed on the basis of block sampling and genetic algorithm. The proposed method can automatically determine the appropriate number of thresholds and the proper threshold values. In AMT-BSGA, an image is treated as a group of individual pixels with the gray values. First, an image is evenly divided into several blocks, and a sample is drawn from each block. Then, genetic algorithm based optimization is applied to each sample to maximize the ratio of mean and variance of the sample. Based on the optimized samples, the number of thresholds and threshold values are preliminarily determined. Finally, a deterministic method is implemented to further optimize the number of thresholds and

  14. Multiphase Image Segmentation Using the Deformable Simplicial Complex Method

    DEFF Research Database (Denmark)

    Dahl, Vedrana Andersen; Christiansen, Asger Nyman; Bærentzen, Jakob Andreas

    2014-01-01

    in image segmentation based on deformable models. We show the benefits of using the deformable simplicial complex method for image segmentation by segmenting an image into a known number of segments characterized by distinct mean pixel intensities....

  15. Segmentation of neuroanatomy in magnetic resonance images

    Science.gov (United States)

    Simmons, Andrew; Arridge, Simon R.; Barker, G. J.; Tofts, Paul S.

    1992-06-01

    Segmentation in neurological magnetic resonance imaging (MRI) is necessary for feature extraction, volume measurement and for the three-dimensional display of neuroanatomy. Automated and semi-automated methods offer considerable advantages over manual methods because of their lack of subjectivity, their data reduction capabilities, and the time savings they give. We have used dual echo multi-slice spin-echo data sets which take advantage of the intrinsically multispectral nature of MRI. As a pre-processing step, a rf non-uniformity correction is applied and if the data is noisy the images are smoothed using a non-isotropic blurring method. Edge-based processing is used to identify the skin (the major outer contour) and the eyes. Edge-focusing has been used to significantly simplify edge images and thus allow simple postprocessing to pick out the brain contour in each slice of the data set. Edge- focusing is a technique which locates significant edges using a high degree of smoothing at a coarse level and tracks these edges to a fine level where the edges can be determined with high positional accuracy. Both 2-D and 3-D edge-detection methods have been compared. Once isolated, the brain is further processed to identify CSF, and, depending upon the MR pulse sequence used, the brain itself may be sub-divided into gray matter and white matter using semi-automatic contrast enhancement and clustering methods.

  16. A BPT Application: Semi-automatic Image Retrieval Tool

    Directory of Open Access Journals (Sweden)

    Shirin Ghanbari

    2010-02-01

    Full Text Available This work presents a semi-automatic tool forcontent retrieval. In contrast to traditional content basedimage retrieval systems that work with entire images, thetool we have developed handles individual objects. Theavailability of a pool of pre-segmented objects found usingregion analysis allows the human behaviour of presegmentationto be replicated. To generate defined objectsin the object pool, segmentation is performed using multidimensionalBinary Partition Trees (BPTs. The treestructure uses colour, spatial frequency edge histograms toform semantically meaningful tree nodes. The BPTs can beintuitively browsed and are stored within XML documentsfor ease of access and analysis. To find an object a nodefrom a query image is matched against the nodes of the BPTof the database image. These are matched according to acollection of MPEG-7 descriptors. Performance evaluationshows high quality segmentations and reliable retrievalresults.

  17. Contrast-based fully automatic segmentation of white matter hyperintensities: method and validation.

    Directory of Open Access Journals (Sweden)

    Thomas Samaille

    Full Text Available White matter hyperintensities (WMH on T2 or FLAIR sequences have been commonly observed on MR images of elderly people. They have been associated with various disorders and have been shown to be a strong risk factor for stroke and dementia. WMH studies usually required visual evaluation of WMH load or time-consuming manual delineation. This paper introduced WHASA (White matter Hyperintensities Automated Segmentation Algorithm, a new method for automatically segmenting WMH from FLAIR and T1 images in multicentre studies. Contrary to previous approaches that were based on intensities, this method relied on contrast: non linear diffusion filtering alternated with watershed segmentation to obtain piecewise constant images with increased contrast between WMH and surroundings tissues. WMH were then selected based on subject dependant automatically computed threshold and anatomical information. WHASA was evaluated on 67 patients from two studies, acquired on six different MRI scanners and displaying a wide range of lesion load. Accuracy of the segmentation was assessed through volume and spatial agreement measures with respect to manual segmentation; an intraclass correlation coefficient (ICC of 0.96 and a mean similarity index (SI of 0.72 were obtained. WHASA was compared to four other approaches: Freesurfer and a thresholding approach as unsupervised methods; k-nearest neighbours (kNN and support vector machines (SVM as supervised ones. For these latter, influence of the training set was also investigated. WHASA clearly outperformed both unsupervised methods, while performing at least as good as supervised approaches (ICC range: 0.87-0.91 for kNN; 0.89-0.94 for SVM. Mean SI: 0.63-0.71 for kNN, 0.67-0.72 for SVM, and did not need any training set.

  18. Generic method for automatic bladder segmentation on cone beam CT using a patient-specific bladder shape model

    Energy Technology Data Exchange (ETDEWEB)

    Schoot, A. J. A. J. van de, E-mail: a.j.schootvande@amc.uva.nl; Schooneveldt, G.; Wognum, S.; Stalpers, L. J. A.; Rasch, C. R. N.; Bel, A. [Department of Radiation Oncology, Academic Medical Center, University of Amsterdam, Meibergdreef 9, 1105 AZ Amsterdam (Netherlands); Hoogeman, M. S. [Department of Radiation Oncology, Daniel den Hoed Cancer Center, Erasmus Medical Center, Groene Hilledijk 301, 3075 EA Rotterdam (Netherlands); Chai, X. [Department of Radiation Oncology, Stanford University School of Medicine, 875 Blake Wilbur Drive, Palo Alto, California 94305 (United States)

    2014-03-15

    Purpose: The aim of this study is to develop and validate a generic method for automatic bladder segmentation on cone beam computed tomography (CBCT), independent of gender and treatment position (prone or supine), using only pretreatment imaging data. Methods: Data of 20 patients, treated for tumors in the pelvic region with the entire bladder visible on CT and CBCT, were divided into four equally sized groups based on gender and treatment position. The full and empty bladder contour, that can be acquired with pretreatment CT imaging, were used to generate a patient-specific bladder shape model. This model was used to guide the segmentation process on CBCT. To obtain the bladder segmentation, the reference bladder contour was deformed iteratively by maximizing the cross-correlation between directional grey value gradients over the reference and CBCT bladder edge. To overcome incorrect segmentations caused by CBCT image artifacts, automatic adaptations were implemented. Moreover, locally incorrect segmentations could be adapted manually. After each adapted segmentation, the bladder shape model was expanded and new shape patterns were calculated for following segmentations. All available CBCTs were used to validate the segmentation algorithm. The bladder segmentations were validated by comparison with the manual delineations and the segmentation performance was quantified using the Dice similarity coefficient (DSC), surface distance error (SDE) and SD of contour-to-contour distances. Also, bladder volumes obtained by manual delineations and segmentations were compared using a Bland-Altman error analysis. Results: The mean DSC, mean SDE, and mean SD of contour-to-contour distances between segmentations and manual delineations were 0.87, 0.27 cm and 0.22 cm (female, prone), 0.85, 0.28 cm and 0.22 cm (female, supine), 0.89, 0.21 cm and 0.17 cm (male, supine) and 0.88, 0.23 cm and 0.17 cm (male, prone), respectively. Manual local adaptations improved the segmentation

  19. Automatic diagnosis of retinal diseases from color retinal images

    OpenAIRE

    Jayanthi, D.; N. Devi; SwarnaParvathi, S.

    2010-01-01

    Teleophthalmology holds a great potential to improve the quality, access, and affordability in health care. For patients, it can reduce the need for travel and provide the access to a superspecialist. Ophthalmology lends itself easily to telemedicine as it is a largely image based diagnosis. The main goal of the proposed system is to diagnose the type of disease in the retina and to automatically detect and segment retinal diseases without human supervision or interaction. The proposed system...

  20. Iris image Segmentation Based on Phase Congruency

    Institute of Scientific and Technical Information of China (English)

    GAO Chao; JIANG Da-qin; Guo Yong-cai

    2006-01-01

    @@ Iris image segmentation is very important for an iris recognition system.There are always iris noises as eyelash,eyelid,reflection and pupil in iris images.The paper proposes a virtual method of segmentation.By locating and normalizing iris images with Gabor filter,we can acquire information of image texture in a series of frequencies and orientations.Iris noise regions are determined based on phase congruency by a group of Gabor filters whose kernels are suitable for edge detection.These regions are filled according to the characteristics of iris noise.The experimental results show that the proposed method can segment iris images effectively.

  1. An Automatic Method for Geometric Segmentation of Masonry Arch Bridges for Structural Engineering Purposes

    Science.gov (United States)

    Riveiro, B.; DeJong, M.; Conde, B.

    2016-06-01

    Despite the tremendous advantages of the laser scanning technology for the geometric characterization of built constructions, there are important limitations preventing more widespread implementation in the structural engineering domain. Even though the technology provides extensive and accurate information to perform structural assessment and health monitoring, many people are resistant to the technology due to the processing times involved. Thus, new methods that can automatically process LiDAR data and subsequently provide an automatic and organized interpretation are required. This paper presents a new method for fully automated point cloud segmentation of masonry arch bridges. The method efficiently creates segmented, spatially related and organized point clouds, which each contain the relevant geometric data for a particular component (pier, arch, spandrel wall, etc.) of the structure. The segmentation procedure comprises a heuristic approach for the separation of different vertical walls, and later image processing tools adapted to voxel structures allows the efficient segmentation of the main structural elements of the bridge. The proposed methodology provides the essential processed data required for structural assessment of masonry arch bridges based on geometric anomalies. The method is validated using a representative sample of masonry arch bridges in Spain.

  2. Automatic identification of algal community from microscopic images.

    Science.gov (United States)

    Santhi, Natchimuthu; Pradeepa, Chinnaraj; Subashini, Parthasarathy; Kalaiselvi, Senthil

    2013-01-01

    A good understanding of the population dynamics of algal communities is crucial in several ecological and pollution studies of freshwater and oceanic systems. This paper reviews the subsequent introduction to the automatic identification of the algal communities using image processing techniques from microscope images. The diverse techniques of image preprocessing, segmentation, feature extraction and recognition are considered one by one and their parameters are summarized. Automatic identification and classification of algal community are very difficult due to various factors such as change in size and shape with climatic changes, various growth periods, and the presence of other microbes. Therefore, the significance, uniqueness, and various approaches are discussed and the analyses in image processing methods are evaluated. Algal identification and associated problems in water organisms have been projected as challenges in image processing application. Various image processing approaches based on textures, shapes, and an object boundary, as well as some segmentation methods like, edge detection and color segmentations, are highlighted. Finally, artificial neural networks and some machine learning algorithms were used to classify and identifying the algae. Further, some of the benefits and drawbacks of schemes are examined. PMID:24151424

  3. DISR: Dental Image Segmentation and Retrieval

    OpenAIRE

    Pilevar, Abdol Hamid

    2012-01-01

    In this paper, we propose novel algorithms for retrieving dental images from databases by their contents. Based on special information of dental images, for better content-based dental image retrieval and representation, the image attributes are used. We propose Dental Image Segmentation and Retrieval (DISR), a content-based image retrieval method that is robust to translation and scaling of the objects in the images. A novel model is used to calculate the features of the image. We implemente...

  4. An Automatic Optic Disk Detection and Segmentation System using Multi-level Thresholding

    Directory of Open Access Journals (Sweden)

    KARASULU, B.

    2014-05-01

    Full Text Available Optic disk (OD boundary localization is a substantial problem in ophthalmic image processing research area. In order to segment the region of OD, we developed an automatic system which involves a multi-level thresholding. The OD segmentation results of the system in terms of average precision, recall and accuracy for DRIVE database are 98.88%, 99.91%, 98.83%, for STARE database are 98.62%, 97.38%, 96.11%, and for DIARETDB1 database are 99.29%, 99.90%, 99.20%, respectively. The experimental results show that our system works properly on retinal image databases with diseased retinas, diabetic signs, and a large degree of quality variability.

  5. METHODS FOR SEGMENTATION OF IVUS ATHEROSCLEROSIS IMAGES

    OpenAIRE

    R. Ravindraiah; K. Tejaswini

    2013-01-01

    Segmentation is an important aspect of medical image processing. Segmentation of coronary arteries ofatherosclerosis is one important process prior to many analyses and visualization tasks for intravascular ultrasound (IVUS)images. It is also helpful in the finding of the disease and its progressive treatment. Different methods are used for medicalimage segmentation such as Clustering methods, Thresholding method, Classifier, Region Growing, Deformable Model,Markov Random Model etc. The main ...

  6. Reasonable threshold value used to segment the individual comet from the comet assay image

    International Nuclear Information System (INIS)

    Reasonable segmentation of the individual comet contour from the Comet Assay (CA) images is the precondition for all of parameters analysis during the automatic analyzing for the CA. The Otsu method and several arithmetic operators for image segmentation, such as Sobel, Prewitt, Roberts and Canny were used to segment the comet contour, and characters of the CA images were analyzed firstly. And then the segmentation methods which had been adopted in the software for CA automatic analysis, such as the CASP, the TriTek CometScoreTM, were put for-ward and compared. At last, a two-step procedure for threshold calculation based on image-content analysis is adopted to segment the individual comet from the CA images, and several principles for the segmentation are put forward too.(authors)

  7. SU-E-J-129: Atlas Development for Cardiac Automatic Contouring Using Multi-Atlas Segmentation

    Energy Technology Data Exchange (ETDEWEB)

    Zhou, R; Yang, J; Pan, T; Milgrom, S; Pinnix, C; Shi, A; Yang, J; Liu, Y; Nguyen, Q; Gomez, D; Dabaja, B; Balter, P; Court, L; Liao, Z [MD Anderson Cancer Center, Houston, TX (United States)

    2015-06-15

    Purpose: To develop a set of atlases for automatic contouring of cardiac structures to determine heart radiation dose and the associated toxicity. Methods: Six thoracic cancer patients with both contrast and non-contrast CT images were acquired for this study. Eight radiation oncologists manually and independently delineated cardiac contours on the non-contrast CT by referring to the fused contrast CT and following the RTOG 1106 atlas contouring guideline. Fifteen regions of interest (ROIs) were delineated, including heart, four chambers, four coronary arteries, pulmonary artery and vein, inferior and superior vena cava, and ascending and descending aorta. Individual expert contours were fused using the simultaneous truth and performance level estimation (STAPLE) algorithm for each ROI and each patient. The fused contours became atlases for an in-house multi-atlas segmentation. Using leave-one-out test, we generated auto-segmented contours for each ROI and each patient. The auto-segmented contours were compared with the fused contours using the Dice similarity coefficient (DSC) and the mean surface distance (MSD). Results: Inter-observer variability was not obvious for heart, chambers, and aorta but was large for other structures that were not clearly distinguishable on CT image. The average DSC between individual expert contours and the fused contours were less than 50% for coronary arteries and pulmonary vein, and the average MSD were greater than 4.0 mm. The largest MSD of expert contours deviating from the fused contours was 2.5 cm. The mean DSC and MSD of auto-segmented contours were within one standard deviation of expert contouring variability except the right coronary artery. The coronary arteries, vena cava, and pulmonary vein had DSC<70% and MSD>3.0 mm. Conclusion: A set of cardiac atlases was created for cardiac automatic contouring, the accuracy of which was comparable to the variability in expert contouring. However, substantial modification may need

  8. Unsupervised Color-texture Image Segmentation

    Institute of Scientific and Technical Information of China (English)

    YU Sheng-yang; ZHANG Fan; WANG Yong-gang; YANG Jie

    2008-01-01

    The measure J in J value segmentation (JSEG) falls to represent the discontinuity of color, which degrades the robustness and discrimination of JSEG. An improved approach for JSEG algorithm was proposed for unsupervised color-texture image segmentation. The texture and photometric invariant edge information were combined, which results in a discriminative measure for color-texture homogeneity. Based on the image whose pixel values are values of the new measure, region growing-merging algorithm used in JSEG was then employed to segment the image. Finally, experiments on a variety of real color images demonstrate performance improvement due to the proposed method.

  9. AN IMPROVED FUZZY CLUSTERING ALGORITHM FOR MICROARRAY IMAGE SPOTS SEGMENTATION

    Directory of Open Access Journals (Sweden)

    V.G. Biju

    2015-11-01

    Full Text Available An automatic cDNA microarray image processing using an improved fuzzy clustering algorithm is presented in this paper. The spot segmentation algorithm proposed uses the gridding technique developed by the authors earlier, for finding the co-ordinates of each spot in an image. Automatic cropping of spots from microarray image is done using these co-ordinates. The present paper proposes an improved fuzzy clustering algorithm Possibility fuzzy local information c means (PFLICM to segment the spot foreground (FG from background (BG. The PFLICM improves fuzzy local information c means (FLICM algorithm by incorporating typicality of a pixel along with gray level information and local spatial information. The performance of the algorithm is validated using a set of simulated cDNA microarray images added with different levels of AWGN noise. The strength of the algorithm is tested by computing the parameters such as the Segmentation matching factor (SMF, Probability of error (pe, Discrepancy distance (D and Normal mean square error (NMSE. SMF value obtained for PFLICM algorithm shows an improvement of 0.9 % and 0.7 % for high noise and low noise microarray images respectively compared to FLICM algorithm. The PFLICM algorithm is also applied on real microarray images and gene expression values are computed.

  10. Gravel Image Segmentation in Noisy Background Based on Partial Entropy Method

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    Because of wide variation in gray levels and particle dimensions and the presence of many small gravel objects in the background, as well as corrupting the image by noise, it is difficult o segment gravel objects. In this paper, we develop a partial entropy method and succeed to realize gravel objects segmentation. We give entropy principles and fur calculation methods. Moreover, we use minimum entropy error automaticly to select a threshold to segment image. We introduce the filter method using mathematical morphology. The segment experiments are performed by using different window dimensions for a group of gravel image and demonstrates that this method has high segmentation rate and low noise sensitivity.

  11. Improving image segmentation by learning region affinities

    Energy Technology Data Exchange (ETDEWEB)

    Prasad, Lakshman [Los Alamos National Laboratory; Yang, Xingwei [TEMPLE UNIV.; Latecki, Longin J [TEMPLE UNIV.

    2010-11-03

    We utilize the context information of other regions in hierarchical image segmentation to learn new regions affinities. It is well known that a single choice of quantization of an image space is highly unlikely to be a common optimal quantization level for all categories. Each level of quantization has its own benefits. Therefore, we utilize the hierarchical information among different quantizations as well as spatial proximity of their regions. The proposed affinity learning takes into account higher order relations among image regions, both local and long range relations, making it robust to instabilities and errors of the original, pairwise region affinities. Once the learnt affinities are obtained, we use a standard image segmentation algorithm to get the final segmentation. Moreover, the learnt affinities can be naturally unutilized in interactive segmentation. Experimental results on Berkeley Segmentation Dataset and MSRC Object Recognition Dataset are comparable and in some aspects better than the state-of-art methods.

  12. Probabilistic multiscale image segmentation by the hyperstack

    NARCIS (Netherlands)

    Vincken, Koenraad Lucas

    2001-01-01

    In the medical community, images from different modalities have found their way to a variety of medical disciplines. Multidimensional images have become indispensable in clinical diagnosis, therapy planning and evaluation. Image segmentation -- dividing an image into meaningful objects -- is a s

  13. Representation Learning: A Unified Deep Learning Framework for Automatic Prostate MR Segmentation

    Science.gov (United States)

    Liao, Shu; Gao, Yaozong; Oto, Aytekin; Shen, Dinggang

    2013-01-01

    Image representation plays an important role in medical image analysis. The key to the success of different medical image analysis algorithms is heavily dependent on how we represent the input data, namely features used to characterize the input image. In the literature, feature engineering remains as an active research topic, and many novel hand-crafted features are designed such as Haar wavelet, histogram of oriented gradient, and local binary patterns. However, such features are not designed with the guidance of the underlying dataset at hand. To this end, we argue that the most effective features should be designed in a learning based manner, namely representation learning, which can be adapted to different patient datasets at hand. In this paper, we introduce a deep learning framework to achieve this goal. Specifically, a stacked independent subspace analysis (ISA) network is adopted to learn the most effective features in a hierarchical and unsupervised manner. The learnt features are adapted to the dataset at hand and encode high level semantic anatomical information. The proposed method is evaluated on the application of automatic prostate MR segmentation. Experimental results show that significant segmentation accuracy improvement can be achieved by the proposed deep learning method compared to other state-of-the-art segmentation approaches. PMID:24579148

  14. Automatic segmentation and classification of the reflected laser dots during analytic measurement of mirror surfaces

    Science.gov (United States)

    Wang, ZhenZhou

    2016-08-01

    In the past research, we have proposed a one-shot-projection method for analytic measurement of the shapes of the mirror surfaces, which utilizes the information of two captured laser dots patterns to reconstruct the mirror surfaces. Yet, the automatic image processing algorithms to extract the laser dots patterns have not been addressed. In this paper, a series of automatic image processing algorithms are proposed to segment and classify the projected laser dots robustly and efficiently during measuring the shapes of mirror surfaces and each algorithm is indispensible for the finally achieved accuracy. Firstly, the captured image is modeled and filtered by the designed frequency domain filter. Then, it is segmented by a robust threshold selection method. A novel iterative erosion method is proposed to separate connected dots. Novel methods to remove noise blob and retrieve missing dots are also proposed. An effective registration method is used to help to select the used SNF laser and the dot generation pattern by analyzing if the dot pattern obeys the principle of central projection well. Experimental results verified the effectiveness of all the proposed algorithms.

  15. Segmentation and separation of venous vasculatures in liver CT images

    Science.gov (United States)

    Wang, Lei; Hansen, Christian; Zidowitz, Stephan; Hahn, Horst K.

    2014-03-01

    Computer-aided analysis of venous vasculatures including hepatic veins and portal veins is important in liver surgery planning. The analysis normally consists of two important pre-processing tasks: segmenting both vasculatures and separating them from each other by assigning different labels. During the acquisition of multi-phase CT images, both of the venous vessels are enhanced by injected contrast agent and acquired either in a common phase or in two individual phases. The enhanced signals established by contrast agent are often not stably acquired due to non-optimal acquisition time. Inadequate contrast and the presence of large lesions in oncological patients, make the segmentation task quite challenging. To overcome these diffculties, we propose a framework with minimal user interactions to analyze venous vasculatures in multi-phase CT images. Firstly, presented vasculatures are automatically segmented adopting an efficient multi-scale Hessian-based vesselness filter. The initially segmented vessel trees are then converted to a graph representation, on which a series of graph filters are applied in post-processing steps to rule out irrelevant structures. Eventually, we develop a semi-automatic workow to refine the segmentation in the areas of inferior vena cava and entrance of portal veins, and to simultaneously separate hepatic veins from portal veins. Segmentation quality was evaluated with intensive tests enclosing 60 CT images from both healthy liver donors and oncological patients. To quantitatively measure the similarities between segmented and reference vessel trees, we propose three additional metrics: skeleton distance, branch coverage, and boundary surface distance, which are dedicated to quantifying the misalignment induced by both branching patterns and radii of two vessel trees.

  16. Medical image segmentation using object atlas versus object cloud models

    Science.gov (United States)

    Phellan, Renzo; Falcão, Alexandre X.; Udupa, Jayaram K.

    2015-03-01

    Medical image segmentation is crucial for quantitative organ analysis and surgical planning. Since interactive segmentation is not practical in a production-mode clinical setting, automatic methods based on 3D object appearance models have been proposed. Among them, approaches based on object atlas are the most actively investigated. A key drawback of these approaches is that they require a time-costly image registration process to build and deploy the atlas. Object cloud models (OCM) have been introduced to avoid registration, considerably speeding up the whole process, but they have not been compared to object atlas models (OAM). The present paper fills this gap by presenting a comparative analysis of the two approaches in the task of individually segmenting nine anatomical structures of the human body. Our results indicate that OCM achieve a statistically significant better accuracy for seven anatomical structures, in terms of Dice Similarity Coefficient and Average Symmetric Surface Distance.

  17. AUTOMATIC RETINA EXUDATES SEGMENTATION WITHOUT A MANUALLY LABELLED TRAINING SET

    Energy Technology Data Exchange (ETDEWEB)

    Giancardo, Luca [ORNL; Meriaudeau, Fabrice [ORNL; Karnowski, Thomas Paul [ORNL; Li, Yaquin [University of Tennessee, Knoxville (UTK); Tobin Jr, Kenneth William [ORNL; Chaum, Edward [University of Tennessee, Knoxville (UTK)

    2011-01-01

    Diabetic macular edema (DME) is a common vision threatening complication of diabetic retinopathy which can be assessed by detecting exudates (a type of bright lesion) in fundus images. In this work, two new methods for the detection of exudates are presented which do not use a supervised learning step and therefore do not require ground-truthed lesion training sets which are time consuming to create, difficult to obtain, and prone to human error. We introduce a new dataset of fundus images from various ethnic groups and levels of DME which we have made publicly available. We evaluate our algorithm with this dataset and compare our results with two recent exudate segmentation algorithms. In all of our tests, our algorithms perform better or comparable with an order of magnitude reduction in computational time.

  18. Cervigram image segmentation based on reconstructive sparse representations

    Science.gov (United States)

    Zhang, Shaoting; Huang, Junzhou; Wang, Wei; Huang, Xiaolei; Metaxas, Dimitris

    2010-03-01

    We proposed an approach based on reconstructive sparse representations to segment tissues in optical images of the uterine cervix. Because of large variations in image appearance caused by the changing of the illumination and specular reflection, the color and texture features in optical images often overlap with each other and are not linearly separable. By leveraging sparse representations the data can be transformed to higher dimensions with sparse constraints and become more separated. K-SVD algorithm is employed to find sparse representations and corresponding dictionaries. The data can be reconstructed from its sparse representations and positive and/or negative dictionaries. Classification can be achieved based on comparing the reconstructive errors. In the experiments we applied our method to automatically segment the biomarker AcetoWhite (AW) regions in an archive of 60,000 images of the uterine cervix. Compared with other general methods, our approach showed lower space and time complexity and higher sensitivity.

  19. Automatic Segmentation of Drosophila Neural Compartments Using GAL4 Expression Data Reveals Novel Visual Pathways.

    Science.gov (United States)

    Panser, Karin; Tirian, Laszlo; Schulze, Florian; Villalba, Santiago; Jefferis, Gregory S X E; Bühler, Katja; Straw, Andrew D

    2016-08-01

    Identifying distinct anatomical structures within the brain and developing genetic tools to target them are fundamental steps for understanding brain function. We hypothesize that enhancer expression patterns can be used to automatically identify functional units such as neuropils and fiber tracts. We used two recent, genome-scale Drosophila GAL4 libraries and associated confocal image datasets to segment large brain regions into smaller subvolumes. Our results (available at https://strawlab.org/braincode) support this hypothesis because regions with well-known anatomy, namely the antennal lobes and central complex, were automatically segmented into familiar compartments. The basis for the structural assignment is clustering of voxels based on patterns of enhancer expression. These initial clusters are agglomerated to make hierarchical predictions of structure. We applied the algorithm to central brain regions receiving input from the optic lobes. Based on the automated segmentation and manual validation, we can identify and provide promising driver lines for 11 previously identified and 14 novel types of visual projection neurons and their associated optic glomeruli. The same strategy can be used in other brain regions and likely other species, including vertebrates. PMID:27426516

  20. Generalized nonconvex optimization for medical image segmentation

    Science.gov (United States)

    Mitra, Sunanda; Joshi, Sujit

    2000-06-01

    Design of a generalized technique for medical image segmentation is a challenging task. Currently a number of approaches are being investigated for 2-D and 3-D medical image segmentation for diagnostic and research applications. The methodology used in this work is aimed at obtaining a generalized solution of non-convex optimization problems by including a structural constraint of mass or density and the concept of additivity properties of entropy to a recently developed statistical approach to clustering and classification. The original computationally intensive procedure is made more efficient both in processing time and accuracy by employing a new similarity parameter for generating the initial clusters that are updated by minimizing an energy function relating the image entropy and expected distortion. The application of the computationally intensive yet generalized solution to nonconvex optimization to a limited set of medical images has resulted in excellent segmentation when compared to other clustering based segmentation approaches. The addition of the parametric approach to determine the initial number of clusters allows significant reduction in processing time and better design of automated segmentation procedure. This research work generalizes a deterministic annealing i.e. a specific statistical approach to solve nonconvex optimization problems by developing a more efficient technique applicable to nonconvex optimization problems (getting trapped in local minima). However, the DA approach is extremely computationally intensive for applications such as image segmentation. The new integrated approach developed in this work allows this optimization technique to be used for medical image segmentation.

  1. Segmentation of liver tumors on CT images

    International Nuclear Information System (INIS)

    This thesis is dedicated to 3D segmentation of liver tumors in CT images. This is a task of great clinical interest since it allows physicians benefiting from reproducible and reliable methods for segmenting such lesions. Accurate segmentation would indeed help them during the evaluation of the lesions, the choice of treatment and treatment planning. Such a complex segmentation task should cope with three main scientific challenges: (i) the highly variable shape of the structures being sought, (ii) their similarity of appearance compared with their surrounding medium and finally (iii) the low signal to noise ratio being observed in these images. This problem is addressed in a clinical context through a two step approach, consisting of the segmentation of the entire liver envelope, before segmenting the tumors which are present within the envelope. We begin by proposing an atlas-based approach for computing pathological liver envelopes. Initially images are pre-processed to compute the envelopes that wrap around binary masks in an attempt to obtain liver envelopes from estimated segmentation of healthy liver parenchyma. A new statistical atlas is then introduced and used to segmentation through its diffeomorphic registration to the new image. This segmentation is achieved through the combination of image matching costs as well as spatial and appearance prior using a multi-scale approach with MRF. The second step of our approach is dedicated to lesions segmentation contained within the envelopes using a combination of machine learning techniques and graph based methods. First, an appropriate feature space is considered that involves texture descriptors being determined through filtering using various scales and orientations. Then, state of the art machine learning techniques are used to determine the most relevant features, as well as the hyper plane that separates the feature space of tumoral voxels to the ones corresponding to healthy tissues. Segmentation is then

  2. Automatic segmentation of meningioma from non-contrasted brain MRI integrating fuzzy clustering and region growing

    Directory of Open Access Journals (Sweden)

    Liao Chun-Chih

    2011-08-01

    Full Text Available Abstract Background In recent years, magnetic resonance imaging (MRI has become important in brain tumor diagnosis. Using this modality, physicians can locate specific pathologies by analyzing differences in tissue character presented in different types of MR images. This paper uses an algorithm integrating fuzzy-c-mean (FCM and region growing techniques for automated tumor image segmentation from patients with menigioma. Only non-contrasted T1 and T2 -weighted MR images are included in the analysis. The study's aims are to correctly locate tumors in the images, and to detect those situated in the midline position of the brain. Methods The study used non-contrasted T1- and T2-weighted MR images from 29 patients with menigioma. After FCM clustering, 32 groups of images from each patient group were put through the region-growing procedure for pixels aggregation. Later, using knowledge-based information, the system selected tumor-containing images from these groups and merged them into one tumor image. An alternative semi-supervised method was added at this stage for comparison with the automatic method. Finally, the tumor image was optimized by a morphology operator. Results from automatic segmentation were compared to the "ground truth" (GT on a pixel level. Overall data were then evaluated using a quantified system. Results The quantified parameters, including the "percent match" (PM and "correlation ratio" (CR, suggested a high match between GT and the present study's system, as well as a fair level of correspondence. The results were compatible with those from other related studies. The system successfully detected all of the tumors situated at the midline of brain. Six cases failed in the automatic group. One also failed in the semi-supervised alternative. The remaining five cases presented noticeable edema inside the brain. In the 23 successful cases, the PM and CR values in the two groups were highly related. Conclusions Results indicated

  3. Heritability and reliability of automatically segmented human hippocampal formation subregions.

    Science.gov (United States)

    Whelan, Christopher D; Hibar, Derrek P; van Velzen, Laura S; Zannas, Anthony S; Carrillo-Roa, Tania; McMahon, Katie; Prasad, Gautam; Kelly, Sinéad; Faskowitz, Joshua; deZubiracay, Greig; Iglesias, Juan E; van Erp, Theo G M; Frodl, Thomas; Martin, Nicholas G; Wright, Margaret J; Jahanshad, Neda; Schmaal, Lianne; Sämann, Philipp G; Thompson, Paul M

    2016-03-01

    The human hippocampal formation can be divided into a set of cytoarchitecturally and functionally distinct subregions, involved in different aspects of memory formation. Neuroanatomical disruptions within these subregions are associated with several debilitating brain disorders including Alzheimer's disease, major depression, schizophrenia, and bipolar disorder. Multi-center brain imaging consortia, such as the Enhancing Neuro Imaging Genetics through Meta-Analysis (ENIGMA) consortium, are interested in studying disease effects on these subregions, and in the genetic factors that affect them. For large-scale studies, automated extraction and subsequent genomic association studies of these hippocampal subregion measures may provide additional insight. Here, we evaluated the test-retest reliability and transplatform reliability (1.5T versus 3T) of the subregion segmentation module in the FreeSurfer software package using three independent cohorts of healthy adults, one young (Queensland Twins Imaging Study, N=39), another elderly (Alzheimer's Disease Neuroimaging Initiative, ADNI-2, N=163) and another mixed cohort of healthy and depressed participants (Max Planck Institute, MPIP, N=598). We also investigated agreement between the most recent version of this algorithm (v6.0) and an older version (v5.3), again using the ADNI-2 and MPIP cohorts in addition to a sample from the Netherlands Study for Depression and Anxiety (NESDA) (N=221). Finally, we estimated the heritability (h(2)) of the segmented subregion volumes using the full sample of young, healthy QTIM twins (N=728). Test-retest reliability was high for all twelve subregions in the 3T ADNI-2 sample (intraclass correlation coefficient (ICC)=0.70-0.97) and moderate-to-high in the 4T QTIM sample (ICC=0.5-0.89). Transplatform reliability was strong for eleven of the twelve subregions (ICC=0.66-0.96); however, the hippocampal fissure was not consistently reconstructed across 1.5T and 3T field strengths (ICC=0

  4. BgCut: Automatic Ship Detection from UAV Images

    Directory of Open Access Journals (Sweden)

    Chao Xu

    2014-01-01

    foreground objects from sea automatically. First, a sea template library including images in different natural conditions is built to provide an initial template to the model. Then the background trimap is obtained by combing some templates matching with region growing algorithm. The output trimap initializes Grabcut background instead of manual intervention and the process of segmentation without iteration. The effectiveness of our proposed model is demonstrated by extensive experiments on a certain area of real UAV aerial images by an airborne Canon 5D Mark. The proposed algorithm is not only adaptive but also with good segmentation. Furthermore, the model in this paper can be well applied in the automated processing of industrial images for related researches.

  5. User Interaction in Semi-Automatic Segmentation of Organs at Risk: a Case Study in Radiotherapy

    NARCIS (Netherlands)

    Ramkumar, A.; Dolz, J.; Kirisli, H.A.; Adebahr, S.; Schimek-Jasch, T.; Nestle, U.; Massoptier, L.; Varga, E.; Stappers, P.J.; Niessen, W.J.; Song, Y.

    2015-01-01

    Accurate segmentation of organs at risk is an important step in radiotherapy planning. Manual segmentation being a tedious procedure and prone to inter- and intra-observer variability, there is a growing interest in automated segmentation methods. However, automatic methods frequently fail to provid

  6. User Interaction in Semi-Automatic Segmentation of Organs at Risk: a Case Study in Radiotherapy

    NARCIS (Netherlands)

    A. Ramkumar (Anjana); J. Dolz (Jose); H.A. Kirisli (Hortense); S. Adebahr (Sonja); T. Schimek-Jasch (Tanja); U. Nestle (Ursula); L. Massoptier (Laurent); E. Varga (Edit); P.J. Stappers (P.); W.J. Niessen (Wiro); Y. Song (Yu)

    2016-01-01

    textabstractAccurate segmentation of organs at risk is an important step in radiotherapy planning. Manual segmentation being a tedious procedure and prone to inter- and intra-observer variability, there is a growing interest in automated segmentation methods. However, automatic methods frequently fa

  7. Computer Based Melanocytic and Nevus Image Enhancement and Segmentation

    Science.gov (United States)

    Jamil, Uzma; Khalid, Shehzad; Abbas, Sarmad; Saleem, Kashif

    2016-01-01

    Digital dermoscopy aids dermatologists in monitoring potentially cancerous skin lesions. Melanoma is the 5th common form of skin cancer that is rare but the most dangerous. Melanoma is curable if it is detected at an early stage. Automated segmentation of cancerous lesion from normal skin is the most critical yet tricky part in computerized lesion detection and classification. The effectiveness and accuracy of lesion classification are critically dependent on the quality of lesion segmentation. In this paper, we have proposed a novel approach that can automatically preprocess the image and then segment the lesion. The system filters unwanted artifacts including hairs, gel, bubbles, and specular reflection. A novel approach is presented using the concept of wavelets for detection and inpainting the hairs present in the cancer images. The contrast of lesion with the skin is enhanced using adaptive sigmoidal function that takes care of the localized intensity distribution within a given lesion's images. We then present a segmentation approach to precisely segment the lesion from the background. The proposed approach is tested on the European database of dermoscopic images. Results are compared with the competitors to demonstrate the superiority of the suggested approach.

  8. Automatic Hierarchical Color Image Classification

    Directory of Open Access Journals (Sweden)

    Jing Huang

    2003-02-01

    Full Text Available Organizing images into semantic categories can be extremely useful for content-based image retrieval and image annotation. Grouping images into semantic classes is a difficult problem, however. Image classification attempts to solve this hard problem by using low-level image features. In this paper, we propose a method for hierarchical classification of images via supervised learning. This scheme relies on using a good low-level feature and subsequently performing feature-space reconfiguration using singular value decomposition to reduce noise and dimensionality. We use the training data to obtain a hierarchical classification tree that can be used to categorize new images. Our experimental results suggest that this scheme not only performs better than standard nearest-neighbor techniques, but also has both storage and computational advantages.

  9. Robust Automatic Pectoral Muscle Segmentation from Mammograms Using Texture Gradient and Euclidean Distance Regression.

    Science.gov (United States)

    Bora, Vibha Bafna; Kothari, Ashwin G; Keskar, Avinash G

    2016-02-01

    In computer-aided diagnosis (CAD) of mediolateral oblique (MLO) view of mammogram, the accuracy of tissue segmentation highly depends on the exclusion of pectoral muscle. Robust methods for such exclusions are essential as the normal presence of pectoral muscle can bias the decision of CAD. In this paper, a novel texture gradient-based approach for automatic segmentation of pectoral muscle is proposed. The pectoral edge is initially approximated to a straight line by applying Hough transform on Probable Texture Gradient (PTG) map of the mammogram followed by block averaging with the aid of approximated line. Furthermore, a smooth pectoral muscle curve is achieved with proposed Euclidean Distance Regression (EDR) technique and polynomial modeling. The algorithm is robust to texture and overlapping fibro glandular tissues. The method is validated with 340 MLO views from three databases-including 200 randomly selected scanned film images from miniMIAS, 100 computed radiography images and 40 full-field digital mammogram images. Qualitatively, 96.75 % of the pectoral muscles are segmented with an acceptable pectoral score index. The proposed method not only outperforms state-of-the-art approaches but also accurately quantifies the pectoral edge. Thus, its high accuracy and relatively quick processing time clearly justify its suitability for CAD.

  10. A Learning Approach for Adaptive Image Segmentation

    OpenAIRE

    Martin, Vincent; Thonnat, Monique

    2007-01-01

    In this chapter, we have proposed a learning approach for three major issues of image segmentation: context adaptation, algorithm selection and parameter tuning according to the image content and the application need. This supervised learning approach relies on hand-labelled samples. The learning process is guided by the goal of the segmentation and therefore makes the approach reliable for a broad range of applications. The user effort is restrained compared to other supervised methods since...

  11. Convolutional Neural Networks for SAR Image Segmentation

    DEFF Research Database (Denmark)

    Malmgren-Hansen, David; Nobel-Jørgensen, Morten

    2015-01-01

    Segmentation of Synthetic Aperture Radar (SAR) images has several uses, but it is a difficult task due to a number of properties related to SAR images. In this article we show how Convolutional Neural Networks (CNNs) can easily be trained for SAR image segmentation with good results. Besides...... this contribution we also suggest a new way to do pixel wise annotation of SAR images that replaces a human expert manual segmentation process, which is both slow and troublesome. Our method for annotation relies on 3D CAD models of objects and scene, and converts these to labels for all pixels in a SAR image. Our...... algorithms are evaluated on the Moving and Stationary Target Acquisition and Recognition (MSTAR) dataset which was released by the Defence Advanced Research Projects Agency during the 1990s. The method is not restricted to the type of targets imaged in MSTAR but can easily be extended to any SAR data where...

  12. Minimizing manual image segmentation turn-around time for neuronal reconstruction by embracing uncertainty.

    Directory of Open Access Journals (Sweden)

    Stephen M Plaza

    Full Text Available The ability to automatically segment an image into distinct regions is a critical aspect in many visual processing applications. Because inaccuracies often exist in automatic segmentation, manual segmentation is necessary in some application domains to correct mistakes, such as required in the reconstruction of neuronal processes from microscopic images. The goal of the automated segmentation tool is traditionally to produce the highest-quality segmentation, where quality is measured by the similarity to actual ground truth, so as to minimize the volume of manual correction necessary. Manual correction is generally orders-of-magnitude more time consuming than automated segmentation, often making handling large images intractable. Therefore, we propose a more relevant goal: minimizing the turn-around time of automated/manual segmentation while attaining a level of similarity with ground truth. It is not always necessary to inspect every aspect of an image to generate a useful segmentation. As such, we propose a strategy to guide manual segmentation to the most uncertain parts of segmentation. Our contributions include 1 a probabilistic measure that evaluates segmentation without ground truth and 2 a methodology that leverages these probabilistic measures to significantly reduce manual correction while maintaining segmentation quality.

  13. Automatic Segmentation of Wrist Bones in CT Using a Statistical Wrist Shape + Pose Model.

    Science.gov (United States)

    Anas, Emran Mohammad Abu; Rasoulian, Abtin; Seitel, Alexander; Darras, Kathryn; Wilson, David; John, Paul St; Pichora, David; Mousavi, Parvin; Rohling, Robert; Abolmaesumi, Purang

    2016-08-01

    Segmentation of the wrist bones in CT images has been frequently used in different clinical applications including arthritis evaluation, bone age assessment and image-guided interventions. The major challenges include non-uniformity and spongy textures of the bone tissue as well as narrow inter-bone spaces. In this work, we propose an automatic wrist bone segmentation technique for CT images based on a statistical model that captures the shape and pose variations of the wrist joint across 60 example wrists at nine different wrist positions. To establish the correspondences across the training shapes at neutral positions, the wrist bone surfaces are jointly aligned using a group-wise registration framework based on a Gaussian Mixture Model. Principal component analysis is then used to determine the major modes of shape variations. The variations in poses not only across the population but also across different wrist positions are incorporated in two pose models. An intra-subject pose model is developed by utilizing the similarity transforms at all wrist positions across the population. Further, an inter-subject pose model is used to model the pose variations across different wrist positions. For segmentation of the wrist bones in CT images, the developed model is registered to the edge point cloud extracted from the CT volume through an expectation maximization based probabilistic approach. Residual registration errors are corrected by application of a non-rigid registration technique. We validate the proposed segmentation method by registering the wrist model to a total of 66 unseen CT volumes of average voxel size of 0.38 mm. We report a mean surface distance error of 0.33 mm and a mean Jaccard index of 0.86. PMID:26890640

  14. A spectral k-means approach to bright-field cell image segmentation.

    Science.gov (United States)

    Bradbury, Laura; Wan, Justin W L

    2010-01-01

    Automatic segmentation of bright-field cell images is important to cell biologists, but difficult to complete due to the complex nature of the cells in bright-field images (poor contrast, broken halo, missing boundaries). Standard approaches such as level set segmentation and active contours work well for fluorescent images where cells appear as round shape, but become less effective when optical artifacts such as halo exist in bright-field images. In this paper, we present a robust segmentation method which combines the spectral and k-means clustering techniques to locate cells in bright-field images. This approach models an image as a matrix graph and segment different regions of the image by computing the appropriate eigenvectors of the matrix graph and using the k-means algorithm. We illustrate the effectiveness of the method by segmentation results of C2C12 (muscle) cells in bright-field images. PMID:21096019

  15. Clustering Approach Towards Image Segmentation: An Analytical Study

    OpenAIRE

    Bora, Dibya Jyoti; Gupta, Anil Kumar

    2014-01-01

    Image processing is an important research area in computer vision. Image segmentation plays the vital rule in image processing research. There exist so many methods for image segmentation. Clustering is an unsupervised study. Clustering can also be used for image segmentation. In this paper, an in-depth study is done on different clustering techniques that can be used for image segmentation with their pros and cons. An experiment for color image segmentation based on clustering with K-Means a...

  16. A HYBRID APPROACH BASED SEGMENTATION TECHNIQUE FOR BRAIN TUMOR IN MRI IMAGES

    Directory of Open Access Journals (Sweden)

    D. Anithadevi

    2016-02-01

    Full Text Available Automatic image segmentation becomes very crucial for tumor detection in medical image processing. Manual and semi automatic segmentation techniques require more time and knowledge. However these drawbacks had overcome by automatic segmentation still there needs to develop more appropriate techniques for medical image segmentation. Therefore, we proposed hybrid approach based image segmentation using the combined features of region growing and threshold segmentation technique. It is followed by pre-processing stage to provide an accurate brain tumor extraction by the help of Magnetic Resonance Imaging (MRI. If the tumor has holes in it, the region growing segmentation algorithm can’t reveal but the proposed hybrid segmentation technique can be achieved and the result as well improved. Hence the result used to made assessment with the various performance measures as DICE, Jaccard similarity, accuracy, sensitivity and specificity. These similarity measures have been extensively used for evaluation with the ground truth of each processed image and its results are compared and analyzed.

  17. Automatic bladder segmentation on CBCT for multiple plan ART of bladder cancer using a patient-specific bladder model

    Science.gov (United States)

    Chai, Xiangfei; van Herk, Marcel; Betgen, Anja; Hulshof, Maarten; Bel, Arjan

    2012-06-01

    In multiple plan adaptive radiotherapy (ART) strategies of bladder cancer, a library of plans corresponding to different bladder volumes is created based on images acquired in early treatment sessions. Subsequently, the plan for the smallest PTV safely covering the bladder on cone-beam CT (CBCT) is selected as the plan of the day. The aim of this study is to develop an automatic bladder segmentation approach suitable for CBCT scans and test its ability to select the appropriate plan from the library of plans for such an ART procedure. Twenty-three bladder cancer patients with a planning CT and on average 11.6 CBCT scans were included in our study. For each patient, all CBCT scans were matched to the planning CT on bony anatomy. Bladder contours were manually delineated for each planning CT (for model building) and CBCT (for model building and validation). The automatic segmentation method consisted of two steps. A patient-specific bladder deformation model was built from the training data set of each patient (the planning CT and the first five CBCT scans). Then, the model was applied to automatically segment bladders in the validation data of the same patient (the remaining CBCT scans). Principal component analysis (PCA) was applied to the training data to model patient-specific bladder deformation patterns. The number of PCA modes for each patient was chosen such that the bladder shapes in the training set could be represented by such number of PCA modes with less than 0.1 cm mean residual error. The automatic segmentation started from the bladder shape of a reference CBCT, which was adjusted by changing the weight of each PCA mode. As a result, the segmentation contour was deformed consistently with the training set to fit the bladder in the validation image. A cost function was defined by the absolute difference between the directional gradient field of reference CBCT sampled on the corresponding bladder contour and the directional gradient field of validation

  18. Natural color image segmentation using integrated mechanism

    Institute of Scientific and Technical Information of China (English)

    Jie Xu (徐杰); Pengfei Shi (施鹏飞)

    2003-01-01

    A new method for natural color image segmentation using integrated mechanism is proposed in this paper.Edges are first detected in term of the high phase congruency in the gray-level image. K-mean cluster is used to label long edge lines based on the global color information to estimate roughly the distribution of objects in the image, while short ones are merged based on their positions and local color differences to eliminate the negative affection caused by texture or other trivial features in image. Region growing technique is employed to achieve final segmentation results. The proposed method unifies edges, whole and local color distributions, as well as spatial information to solve the natural image segmentation problem.The feasibility and effectiveness of this method have been demonstrated by various experiments.

  19. A new Level-set based Protocol for Accurate Bone Segmentation from CT Imaging

    CERN Document Server

    Pinheiro, Manuel

    2015-01-01

    In this work it is proposed a medical image segmentation pipeline for accurate bone segmentation from CT imaging. It is a two-step methodology, with a pre-segmentation step and a segmentation refinement step. First, the user performs a rough segmenting of the desired region of interest. Next, a fully automatic refinement step is applied to the pre-segmented data. The automatic segmentation refinement is composed by several sub-stpng, namely image deconvolution, image cropping and interpolation. The user-defined pre-segmentation is then refined over the deconvolved, cropped, and up-sampled version of the image. The algorithm is applied in the segmentation of CT images of a composite femur bone, reconstructed with different reconstruction protocols. Segmentation outcomes are validated against a gold standard model obtained with coordinate measuring machine Nikon Metris LK V20 with a digital line scanner LC60-D that guarantees an accuracy of 28 $\\mu m$. High sub-pixel accuracy models were obtained for all tested...

  20. Nucleus segmentation in histology images with hierarchical multilevel thresholding

    Science.gov (United States)

    Ahmady Phoulady, Hady; Goldgof, Dmitry B.; Hall, Lawrence O.; Mouton, Peter R.

    2016-03-01

    Automatic segmentation of histological images is an important step for increasing throughput while maintaining high accuracy, avoiding variation from subjective bias, and reducing the costs for diagnosing human illnesses such as cancer and Alzheimer's disease. In this paper, we present a novel method for unsupervised segmentation of cell nuclei in stained histology tissue. Following an initial preprocessing step involving color deconvolution and image reconstruction, the segmentation step consists of multilevel thresholding and a series of morphological operations. The only parameter required for the method is the minimum region size, which is set according to the resolution of the image. Hence, the proposed method requires no training sets or parameter learning. Because the algorithm requires no assumptions or a priori information with regard to cell morphology, the automatic approach is generalizable across a wide range of tissues. Evaluation across a dataset consisting of diverse tissues, including breast, liver, gastric mucosa and bone marrow, shows superior performance over four other recent methods on the same dataset in terms of F-measure with precision and recall of 0.929 and 0.886, respectively.

  1. Color Image Segmentation using Kohonen Self-Organizing Map (SOM

    Directory of Open Access Journals (Sweden)

    I Komang Ariana

    2014-05-01

    Full Text Available Color image segmentation using Kohonen Self-Organizing Map (SOM, is proposed in this study. RGB color space is used as input in the process of clustering by SOM. Measurement of the distance between weight vector and input vector in learning and recognition stages in SOM method, uses Normalized Euclidean Distance. Then, the validity of clustering result is tested by Davies-Bouldin Index (DBI and Validity Measure (VM to determine the most optimal number of cluster. The clustering result, according to the most optimal number of cluster, then is processed with spatial operations. Spatial operations are used to eliminate noise and small regions which are formed from the clustering result. This system allows segmentation process become automatic and unsupervised. The segmentation results are close to human perception.

  2. Pulmonary Vascular Tree Segmentation from Contrast-Enhanced CT Images

    CERN Document Server

    Helmberger, M; Pienn, M; Balint, Z; Olschewski, A; Bischof, H

    2013-01-01

    We present a pulmonary vessel segmentation algorithm, which is fast, fully automatic and robust. It uses a coarse segmentation of the airway tree and a left and right lung labeled volume to restrict a vessel enhancement filter, based on an offset medialness function, to the lungs. We show the application of our algorithm on contrast-enhanced CT images, where we derive a clinical parameter to detect pulmonary hypertension (PH) in patients. Results on a dataset of 24 patients show that quantitative indices derived from the segmentation are applicable to distinguish patients with and without PH. Further work-in-progress results are shown on the VESSEL12 challenge dataset, which is composed of non-contrast-enhanced scans, where we range in the midfield of participating contestants.

  3. A unified framework for automatic wound segmentation and analysis with deep convolutional neural networks.

    Science.gov (United States)

    Wang, Changhan; Yan, Xinchen; Smith, Max; Kochhar, Kanika; Rubin, Marcie; Warren, Stephen M; Wrobel, James; Lee, Honglak

    2015-08-01

    Wound surface area changes over multiple weeks are highly predictive of the wound healing process. Furthermore, the quality and quantity of the tissue in the wound bed also offer important prognostic information. Unfortunately, accurate measurements of wound surface area changes are out of reach in the busy wound practice setting. Currently, clinicians estimate wound size by estimating wound width and length using a scalpel after wound treatment, which is highly inaccurate. To address this problem, we propose an integrated system to automatically segment wound regions and analyze wound conditions in wound images. Different from previous segmentation techniques which rely on handcrafted features or unsupervised approaches, our proposed deep learning method jointly learns task-relevant visual features and performs wound segmentation. Moreover, learned features are applied to further analysis of wounds in two ways: infection detection and healing progress prediction. To the best of our knowledge, this is the first attempt to automate long-term predictions of general wound healing progress. Our method is computationally efficient and takes less than 5 seconds per wound image (480 by 640 pixels) on a typical laptop computer. Our evaluations on a large-scale wound database demonstrate the effectiveness and reliability of the proposed system. PMID:26736781

  4. Automatic Multi-Level Thresholding Segmentation Based on Multi-Objective Optimization

    Directory of Open Access Journals (Sweden)

    L. DJEROU,

    2012-01-01

    Full Text Available In this paper, we present a new multi-level image thresholding technique, called Automatic Threshold based on Multi-objective Optimization "ATMO" that combines the flexibility of multi-objective fitness functions with the power of a Binary Particle Swarm Optimization algorithm "BPSO", for searching the "optimum" number of the thresholds and simultaneously the optimal thresholds of three criteria: the between-class variances criterion, the minimum error criterion and the entropy criterion. Some examples of test images are presented to compare our segmentation method, based on the multi-objective optimization approach with Otsu’s, Kapur’s and Kittler’s methods. Our experimental results show that the thresholding method based on multi-objective optimization is more efficient than the classical Otsu’s, Kapur’s and Kittler’s methods.

  5. A framework for automatic construction of 3D PDM from segmented volumetric neuroradiological data sets.

    Science.gov (United States)

    Fu, Yili; Gao, Wenpeng; Xiao, Yongfei; Liu, Jimin

    2010-03-01

    3D point distribution model (PDM) of subcortical structures can be applied in medical image analysis by providing priori-knowledge. However, accurate shape representation and point correspondence are still challenging for building 3D PDM. This paper presents a novel framework for the automated construction of 3D PDMs from a set of segmented volumetric images. First, a template shape is generated according to the spatial overlap. Then the corresponding landmarks among shapes are automatically identified by a novel hierarchical global-to-local approach, which combines iterative closest point based global registration and active surface model based local deformation to transform the template shape to all other shapes. Finally, a 3D PDM is constructed. Experiment results on four subcortical structures show that the proposed method is able to construct 3D PDMs with a high quality in compactness, generalization and specificity, and more efficient and effective than the state-of-art methods such as MDL and SPHARM. PMID:19631401

  6. The Automatic Image Segmentation Method Based on Fast FCM and Random Walk Algorithm%基于快速FCM与随机游走算法的图像自动分割方法

    Institute of Scientific and Technical Information of China (English)

    许健才; 张良均; 余燕团

    2016-01-01

    在图像分割中,针对 FCM 算法存在聚类数目需要预先给定、收敛速度慢等缺点,本文把快速模糊 C 均值聚类算法和随机游走算法相结合,具体方法为先采用快速模糊 C 均值聚类算法对图像进行预分割,以便获得聚类中心的位置,然后将该中心作为随机游走的种子点,再进行图像分割,实验结果得到了较为满意的预期效果,证明该方法是可行的。本文的研究为快速 FCM 实现自适应性和开发图形图像预处理系统提供了技术支持与理论依据。%As far as image segmentation, the defeat of the number of clusters for FCM algorithm is reeded to be improued. In this paper, the fast fuzzy C-means clustering and random walk algorithm are combined to solve the problem of image segmentation. Firstly, the fast FCM for image pre-segmentation to obtain the number of clusters and cluster central location as the seed points of random walk firstly. Then, for image segmentation, experimental results show that this method is feasible, and get a more satisfactory desired purpose. Results of this study achieve self-adaptive and fast FCM develop graphical image preprocessing system provides technical support and theoretical basis.

  7. Automatic segmentation of coronary angiograms based on fuzzy inferring and probabilistic tracking

    Directory of Open Access Journals (Sweden)

    Shoujun Zhou

    2010-08-01

    Full Text Available Abstract Background Segmentation of the coronary angiogram is important in computer-assisted artery motion analysis or reconstruction of 3D vascular structures from a single-plan or biplane angiographic system. Developing fully automated and accurate vessel segmentation algorithms is highly challenging, especially when extracting vascular structures with large variations in image intensities and noise, as well as with variable cross-sections or vascular lesions. Methods This paper presents a novel tracking method for automatic segmentation of the coronary artery tree in X-ray angiographic images, based on probabilistic vessel tracking and fuzzy structure pattern inferring. The method is composed of two main steps: preprocessing and tracking. In preprocessing, multiscale Gabor filtering and Hessian matrix analysis were used to enhance and extract vessel features from the original angiographic image, leading to a vessel feature map as well as a vessel direction map. In tracking, a seed point was first automatically detected by analyzing the vessel feature map. Subsequently, two operators [e.g., a probabilistic tracking operator (PTO and a vessel structure pattern detector (SPD] worked together based on the detected seed point to extract vessel segments or branches one at a time. The local structure pattern was inferred by a multi-feature based fuzzy inferring function employed in the SPD. The identified structure pattern, such as crossing or bifurcation, was used to control the tracking process, for example, to keep tracking the current segment or start tracking a new one, depending on the detected pattern. Results By appropriate integration of these advanced preprocessing and tracking steps, our tracking algorithm is able to extract both vessel axis lines and edge points, as well as measure the arterial diameters in various complicated cases. For example, it can walk across gaps along the longitudinal vessel direction, manage varying vessel

  8. Retinal Image Preprocessing: Background and Noise Segmentation

    Directory of Open Access Journals (Sweden)

    Usman Akram

    2012-07-01

    Full Text Available Retinal images are used for the automated screening and diagnosis of diabetic retinopathy. The retinal image quality must be improved for the detection of features and abnormalities and for this purpose preprocessing of retinal images is vital. In this paper, we present a novel automated approach for preprocessing of colored retinal images. The proposed technique improves the quality of input retinal image by separating the background and noisy area from the overall image. It contains coarse segmentation and fine segmentation. Standard retinal images databases Diaretdb0, Diaretdb1, DRIVE and STARE are used to test the validation of our preprocessing technique. The experimental results show the validity of proposed preprocessing technique.

  9. MRI Brain Image Segmentation based on Thresholding

    Directory of Open Access Journals (Sweden)

    G. Evelin Sujji, Y.V.S. Lakshmi, G. Wiselin Jiji

    2013-03-01

    Full Text Available Medical Image processing is one of the mostchallenging topics in research field. The mainobjective of image segmentation is to extract variousfeatures of the image that are used foranalysing,interpretation and understanding of images.Medical Resonance Image plays a major role inMedical diagnostics. Image processing in MRI ofbrain is highlyessential due to accurate detection ofthe type of brain abnormality which can reduce thechance of fatal result. This paper outlines anefficient image segmentation technique that candistinguish the pathological tissues such asedemaandtumourfrom thenormal tissues such as WhiteMatter(WM,GreyMatter(GM, andCerebrospinal Fluid(CSF. Thresholding is simplerand most commonly used techniques in imagesegmentation. This technique can be used to detectthe contour of thetumourin brain.

  10. A Fast Method for the Segmentation of Synaptic Junctions and Mitochondria in Serial Electron Microscopic Images of the Brain

    OpenAIRE

    Márquez Neila, Pablo; Baumela, Luis; González-Soriano, Juncal; Rodríguez, Jose-Rodrigo; DeFelipe, Javier; Merchán-Pérez, Ángel

    2016-01-01

    Recent electron microscopy (EM) imaging techniques permit the automatic acquisition of a large number of serial sections from brain samples. Manual segmentation of these images is tedious, time-consuming and requires a high degree of user expertise. Therefore, there is considerable interest in developing automatic segmentation methods. However, currently available methods are computationally demanding in terms of computer time and memory usage, and to work properly many of them require image ...

  11. Image Segmentation Using Weak Shape Priors

    CERN Document Server

    Xu, Robert Sheng; Salama, Magdy

    2010-01-01

    The problem of image segmentation is known to become particularly challenging in the case of partial occlusion of the object(s) of interest, background clutter, and the presence of strong noise. To overcome this problem, the present paper introduces a novel approach segmentation through the use of "weak" shape priors. Specifically, in the proposed method, an segmenting active contour is constrained to converge to a configuration at which its geometric parameters attain their empirical probability densities closely matching the corresponding model densities that are learned based on training samples. It is shown through numerical experiments that the proposed shape modeling can be regarded as "weak" in the sense that it minimally influences the segmentation, which is allowed to be dominated by data-related forces. On the other hand, the priors provide sufficient constraints to regularize the convergence of segmentation, while requiring substantially smaller training sets to yield less biased results as compare...

  12. Intravascular Ultrasound Image Segmentation Using Morphological Snakes

    Directory of Open Access Journals (Sweden)

    Hamdi Mohamed Ali

    2012-06-01

    Full Text Available From the first use of the technics of intravascular ultrasound (IVUS as an imaging technique for the coronary artery system at the 70th century until now , the segmentation of the arterial wall boundaries still an important problem . Much research has been done to give better segmentation result for better diagnostics , evaluation and therapy planning. In this paper we present a new segmentation technics based on Morphological Snakes which developed by Luis Álvarez used for the first time for IVUS segmentation. It is a simple , fast and stable approach of snakes evolution algorithm. Results are presented and discussed in order to demonstrate the effectiveness of this approach in IVUS segmentation.

  13. An Automatic Number Plate Recognition System under Image Processing

    Directory of Open Access Journals (Sweden)

    Sarbjit Kaur

    2016-03-01

    Full Text Available Automatic Number Plate Recognition system is an application of computer vision and image processing technology that takes photograph of vehicles as input image and by extracting their number plate from whole vehicle image , it display the number plate information into text. Mainly the ANPR system consists of 4 phases: - Acquisition of Vehicle Image and Pre-Processing, Extraction of Number Plate Area, Character Segmentation and Character Recognition. The overall accuracy and efficiency of whole ANPR system depends on number plate extraction phase as character segmentation and character recognition phases are also depend on the output of this phase. Further the accuracy of Number Plate Extraction phase depends on the quality of captured vehicle image. Higher be the quality of captured input vehicle image more will be the chances of proper extraction of vehicle number plate area. The existing methods of ANPR works well for dark and bright/light categories image but it does not work well for Low Contrast, Blurred and Noisy images and the detection of exact number plate area by using the existing ANPR approach is not successful even after applying existing filtering and enhancement technique for these types of images. Due to wrong extraction of number plate area, the character segmentation and character recognition are also not successful in this case by using the existing method. To overcome these drawbacks I proposed an efficient approach for ANPR in which the input vehicle image is pre-processed firstly by iterative bilateral filtering , adaptive histogram equalization and number plate is extracted from pre-processed vehicle image using morphological operations, image subtraction, image binarization/thresholding, sobel vertical edge detection and by boundary box analysis. Sometimes the extracted plate area also contains noise, bolts, frames etc. So the extracted plate area is enhanced by using morphological operations to improve the quality of

  14. Automatic segmentation of lesions for the computer-assisted detection in fluorescence urology

    Science.gov (United States)

    Kage, Andreas; Legal, Wolfgang; Kelm, Peter; Simon, Jörg; Bergen, Tobias; Münzenmayer, Christian; Benz, Michaela

    2012-03-01

    Bladder cancer is one of the most common cancers in the western world. The diagnosis in Germany is based on the visual inspection of the bladder. This inspection performed with a cystoscope is a challenging task as some kinds of abnormal tissues do not differ much in their appearance from their surrounding healthy tissue. Fluorescence Cystoscopy has the potential to increase the detection rate. A liquid marker introduced into the bladder in advance of the inspection is concentrated in areas with high metabolism. Thus these areas appear as bright "glowing". Unfortunately, the fluorescence image contains besides the glowing of the suspicious lesions no more further visual information like for example the appearance of the blood vessels. A visual judgment of the lesion as well as a precise treatment has to be done using white light illumination. Thereby, the spatial information of the lesion provided by the fluorescence image has to be guessed by the clinical expert. This leads to a time consuming procedure due to many switches between the modalities and increases the risk of mistreatment. We introduce an automatic approach, which detects and segments any suspicious lesion in the fluorescence image automatically once the image was classified as a fluorescence image. The area of the contour of the detected lesion is transferred to the corresponding white light image and provide the clinical expert the spatial information of the lesion. The advantage of this approach is, that the clinical expert gets the spatial and the visual information of the lesion together in one image. This can save time and decrease the risk of an incomplete removal of a malign lesion.

  15. An unsupervised strategy for biomedical image segmentation

    Directory of Open Access Journals (Sweden)

    Roberto Rodríguez

    2010-09-01

    Full Text Available Roberto Rodríguez1, Rubén Hernández21Digital Signal Processing Group, Institute of Cybernetics, Mathematics, and Physics, Havana, Cuba; 2Interdisciplinary Professional Unit of Engineering and Advanced Technology, IPN, MexicoAbstract: Many segmentation techniques have been published, and some of them have been widely used in different application problems. Most of these segmentation techniques have been motivated by specific application purposes. Unsupervised methods, which do not assume any prior scene knowledge can be learned to help the segmentation process, and are obviously more challenging than the supervised ones. In this paper, we present an unsupervised strategy for biomedical image segmentation using an algorithm based on recursively applying mean shift filtering, where entropy is used as a stopping criterion. This strategy is proven with many real images, and a comparison is carried out with manual segmentation. With the proposed strategy, errors less than 20% for false positives and 0% for false negatives are obtained.Keywords: segmentation, mean shift, unsupervised segmentation, entropy

  16. Template-based automatic breast segmentation on MRI by excluding the chest region

    Energy Technology Data Exchange (ETDEWEB)

    Lin, Muqing [Tu and Yuen Center for Functional Onco-Imaging, Department of Radiological Sciences, University of California, Irvine, California 92697-5020 and National-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Department of Biomedical Engineering, School of Medicine, Shenzhen University, 518060 China (China); Chen, Jeon-Hor [Tu and Yuen Center for Functional Onco-Imaging, Department of Radiological Sciences, University of California, Irvine, California 92697-5020 and Department of Radiology, E-Da Hospital and I-Shou University, Kaohsiung 82445, Taiwan (China); Wang, Xiaoyong; Su, Min-Ying, E-mail: msu@uci.edu [Tu and Yuen Center for Functional Onco-Imaging, Department of Radiological Sciences, University of California, Irvine, California 92697-5020 (United States); Chan, Siwa [Department of Radiology, Taichung Veterans General Hospital, Taichung 40407, Taiwan (China); Chen, Siping [National-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Department of Biomedical Engineering, School of Medicine, Shenzhen University, 518060 China (China)

    2013-12-15

    Purpose: Methods for quantification of breast density on MRI using semiautomatic approaches are commonly used. In this study, the authors report on a fully automatic chest template-based method. Methods: Nonfat-suppressed breast MR images from 31 healthy women were analyzed. Among them, one case was randomly selected and used as the template, and the remaining 30 cases were used for testing. Unlike most model-based breast segmentation methods that use the breast region as the template, the chest body region on a middle slice was used as the template. Within the chest template, three body landmarks (thoracic spine and bilateral boundary of the pectoral muscle) were identified for performing the initial V-shape cut to determine the posterior lateral boundary of the breast. The chest template was mapped to each subject's image space to obtain a subject-specific chest model for exclusion. On the remaining image, the chest wall muscle was identified and excluded to obtain clean breast segmentation. The chest and muscle boundaries determined on the middle slice were used as the reference for the segmentation of adjacent slices, and the process continued superiorly and inferiorly until all 3D slices were segmented. The segmentation results were evaluated by an experienced radiologist to mark voxels that were wrongly included or excluded for error analysis. Results: The breast volumes measured by the proposed algorithm were very close to the radiologist's corrected volumes, showing a % difference ranging from 0.01% to 3.04% in 30 tested subjects with a mean of 0.86% ± 0.72%. The total error was calculated by adding the inclusion and the exclusion errors (so they did not cancel each other out), which ranged from 0.05% to 6.75% with a mean of 3.05% ± 1.93%. The fibroglandular tissue segmented within the breast region determined by the algorithm and the radiologist were also very close, showing a % difference ranging from 0.02% to 2.52% with a mean of 1.03% ± 1

  17. Superpixel Cut for Figure-Ground Image Segmentation

    Science.gov (United States)

    Yang, Michael Ying; Rosenhahn, Bodo

    2016-06-01

    Figure-ground image segmentation has been a challenging problem in computer vision. Apart from the difficulties in establishing an effective framework to divide the image pixels into meaningful groups, the notions of figure and ground often need to be properly defined by providing either user inputs or object models. In this paper, we propose a novel graph-based segmentation framework, called superpixel cut. The key idea is to formulate foreground segmentation as finding a subset of superpixels that partitions a graph over superpixels. The problem is formulated as Min-Cut. Therefore, we propose a novel cost function that simultaneously minimizes the inter-class similarity while maximizing the intra-class similarity. This cost function is optimized using parametric programming. After a small learning step, our approach is fully automatic and fully bottom-up, which requires no high-level knowledge such as shape priors and scene content. It recovers coherent components of images, providing a set of multiscale hypotheses for high-level reasoning. We evaluate our proposed framework by comparing it to other generic figure-ground segmentation approaches. Our method achieves improved performance on state-of-the-art benchmark databases.

  18. OCT image segmentation of the prostate nerves

    Science.gov (United States)

    Chitchian, Shahab; Weldon, Thomas P.; Fried, Nathaniel M.

    2009-08-01

    The cavernous nerves course along the surface of the prostate and are responsible for erectile function. Improvements in identification, imaging, and visualization of the cavernous nerves during prostate cancer surgery may improve nerve preservation and postoperative sexual potency. In this study, 2-D OCT images of the rat prostate were segmented to differentiate the cavernous nerves from the prostate gland. Three image features were employed: Gabor filter, Daubechies wavelet, and Laws filter. The features were segmented using a nearestneighbor classifier. N-ary morphological post-processing was used to remove small voids. The cavernous nerves were differentiated from the prostate gland with a segmentation error rate of only 0.058 +/- 0.019.

  19. MEDICAL IMAGE SEGMENTATION FOR ANATOMICAL KNOWLEDGE EXTRACTION

    Directory of Open Access Journals (Sweden)

    Ms Maya Eapen

    2014-01-01

    Full Text Available Computed Tomography-Angiography (CTA images of the abdomen, followed by precise segmentation and subsequent computation of shape based features of liver play an important role in hepatic surgery, patient/donor diagnosis during liver transplantation and at various treatment stages. Nevertheless, the issues like intensity similarity and Partial Volume Effect (PVE between the neighboring organs; left the task of liver segmentation critical. The accurate segmentation of liver helps the surgeons to perfectly classify the patients based on their liver anatomy which in turn helps them in the treatment decision phase. In this study, we propose an effective Advanced Region Growing (ARG algorithm for segmentation of liver from CTA images. The performance of the proposed technique was tested with several CTA images acquired across a wide range of patients. The proposed ARG algorithm identifies the liver regions on the images based on the statistical features (intensity distribution and orientation value. The proposed technique addressed the aforementioned issues and been evaluated both quantitatively and qualitatively. For quantitative analysis proposed method was compared with manual segmentation (gold standard. The method was also compared with standard region growing.

  20. Hierarchical Segmentation Enhances Diagnostic Imaging

    Science.gov (United States)

    2007-01-01

    Bartron Medical Imaging LLC (BMI), of New Haven, Connecticut, gained a nonexclusive license from Goddard Space Flight Center to use the RHSEG software in medical imaging. To manage image data, BMI then licensed two pattern-matching software programs from NASA's Jet Propulsion Laboratory that were used in image analysis and three data-mining and edge-detection programs from Kennedy Space Center. More recently, BMI made NASA history by being the first company to partner with the Space Agency through a Cooperative Research and Development Agreement to develop a 3-D version of RHSEG. With U.S. Food and Drug Administration clearance, BMI will sell its Med-Seg imaging system with the 2-D version of the RHSEG software to analyze medical imagery from CAT and PET scans, MRI, ultrasound, digitized X-rays, digitized mammographies, dental X-rays, soft tissue analyses, moving object analyses, and soft-tissue slides such as Pap smears for the diagnoses and management of diseases. Extending the software's capabilities to three dimensions will eventually enable production of pixel-level views of a tumor or lesion, early identification of plaque build-up in arteries, and identification of density levels of microcalcification in mammographies.

  1. Remote Sensing Image Segmentation with Probabilistic Neural Networks

    Institute of Scientific and Technical Information of China (English)

    LIU Gang

    2005-01-01

    This paper focuses on the image segmentation with probabilistic neural networks (PNNs). Back propagation neural networks (BpNNs) and multi perceptron neural networks (MLPs) are also considered in this study. Especially, this paper investigates the implementation of PNNs in image segmentation and optimal processing of image segmentation with a PNN. The comparison between image segmentations with PNNs and with other neural networks is given. The experimental results show that PNNs can be successfully applied to image segmentation for good results.

  2. Automatic Segmentation of Moving Objects in Video Sequences for Indoor and Outdoor Applications

    Institute of Scientific and Technical Information of China (English)

    FALAH E. ALSAQRE; YUAN Bao-zong

    2003-01-01

    Computer vision systems have an impressive spread both for their practical application and for theoretical research. The common approach used in such systems consists of a good segmentation of moving objects from video sequences. This paper presents an automatic algorithm for segmenting and evxtracting moving objects suitable for indoor and outdoor video applications, where the background scene can be captured beforehand. Since edge detection is often used to extract accurate boundaries of the image's objects, the first step in our algorithm is accomplished by combining two edge maps which are detected from the frame difference in two consecutive frames and the background subtraction. After removing edge points that belong to the background, the resulting moving edge map is fed to the object extraction step. A fundamental task in this step is to declare the candidates of the moving object, followed by applying morphological operations. The algorithm is implemented on a real video sequence as well as MPEG-4 sequence and good segmentation results are achieved.

  3. Fully automatic lung segmentation and rib suppression methods to improve nodule detection in chest radiographs.

    Science.gov (United States)

    Soleymanpour, Elaheh; Pourreza, Hamid Reza; Ansaripour, Emad; Yazdi, Mehri Sadooghi

    2011-07-01

    Computer-aided Diagnosis (CAD) systems can assist radiologists in several diagnostic tasks. Lung segmentation is one of the mandatory steps for initial detection of lung cancer in Posterior-Anterior chest radiographs. On the other hand, many CAD schemes in projection chest radiography may benefit from the suppression of the bony structures that overlay the lung fields, e.g. ribs. The original images are enhanced by an adaptive contrast equalization and non-linear filtering. Then an initial estimation of lung area is obtained based on morphological operations and then it is improved by growing this region to find the accurate final contour, then for rib suppression, we use oriented spatial Gabor filter. The proposed method was tested on a publicly available database of 247 chest radiographs. Results show that this method outperformed greatly with accuracy of 96.25% for lung segmentation, also we will show improving the conspicuity of lung nodules by rib suppression with local nodule contrast measures. Because there is no additional radiation exposure or specialized equipment required, it could also be applied to bedside portable chest x-rays. In addition to simplicity of these fully automatic methods, lung segmentation and rib suppression algorithms are performed accurately with low computation time and robustness to noise because of the suitable enhancement procedure.

  4. Automatic delineation of tumor volumes by co-segmentation of combined PET/MR data

    International Nuclear Information System (INIS)

    Combined PET/MRI may be highly beneficial for radiotherapy treatment planning in terms of tumor delineation and characterization. To standardize tumor volume delineation, an automatic algorithm for the co-segmentation of head and neck (HN) tumors based on PET/MR data was developed. Ten HN patient datasets acquired in a combined PET/MR system were available for this study. The proposed algorithm uses both the anatomical T2-weighted MR and FDG-PET data. For both imaging modalities tumor probability maps were derived, assigning each voxel a probability of being cancerous based on its signal intensity. A combination of these maps was subsequently segmented using a threshold level set algorithm. To validate the method, tumor delineations from three radiation oncologists were available. Inter-observer variabilities and variabilities between the algorithm and each observer were quantified by means of the Dice similarity index and a distance measure. Inter-observer variabilities and variabilities between observers and algorithm were found to be comparable, suggesting that the proposed algorithm is adequate for PET/MR co-segmentation. Moreover, taking into account combined PET/MR data resulted in more consistent tumor delineations compared to MR information only. (paper)

  5. EFFICIENT IMAGE SEGMENTATION FOR SEMANTIC OBJECT GENERATION

    Institute of Scientific and Technical Information of China (English)

    Chen Xiaotang; Yu Yinglin

    2002-01-01

    This letter presents an efficient and simple image segmentation method for semantic object spatial segmentation. First, the image is filtered using contour-preserving filters. Then it is quasi-flat labeled. The small regions near the contour are classified as uncertain regions and are eliminated by region growing and merging. Further region merging is used to reduce the region number. The simulation results show its efficiency and simplicity. It can preserve the semantic object shape while emphasize on the perceptual complex part of the object. So it conforms to the human visual perception very well.

  6. Optimization of Weighted Curvature for Image Segmentation

    CERN Document Server

    El-Zehiry, Noha

    2010-01-01

    Minimization of boundary curvature is a classic regularization technique for image segmentation in the presence of noisy image data. Techniques for minimizing curvature have historically been derived from descent methods which could be trapped in a local minimum and therefore required a good initialization. Recently, combinatorial optimization techniques have been applied to the optimization of curvature which provide a solution that achieves nearly a global optimum. However, when applied to image segmentation these methods required a meaningful data term. Unfortunately, for many images, particularly medical images, it is difficult to find a meaningful data term. Therefore, we propose to remove the data term completely and instead weight the curvature locally, while still achieving a global optimum.

  7. Segmenting Images for a Better Diagnosis

    Science.gov (United States)

    2004-01-01

    NASA's Hierarchical Segmentation (HSEG) software has been adapted by Bartron Medical Imaging, LLC, for use in segmentation feature extraction, pattern recognition, and classification of medical images. Bartron acquired licenses from NASA Goddard Space Flight Center for application of the HSEG concept to medical imaging, from the California Institute of Technology/Jet Propulsion Laboratory to incorporate pattern-matching software, and from Kennedy Space Center for data-mining and edge-detection programs. The Med-Seg[TM] united developed by Bartron provides improved diagnoses for a wide range of medical images, including computed tomography scans, positron emission tomography scans, magnetic resonance imaging, ultrasound, digitized Z-ray, digitized mammography, dental X-ray, soft tissue analysis, and moving object analysis. It also can be used in analysis of soft-tissue slides. Bartron's future plans include the application of HSEG technology to drug development. NASA is advancing it's HSEG software to learn more about the Earth's magnetosphere.

  8. IMAGE SEGMENTATION FOR TUMOR DETECTION USING FUZZY INFERENCE SYSTEM

    OpenAIRE

    V. Janani; P. Meena

    2013-01-01

    Image segmentation on surgical images plays a vital role in diagnosing and analyzing theanatomy of human body. The area of image segmentation has made an extensive ideology for classifyingbiomedical images. One such application for segmenting and classifying MRI brain images using fuzzy basedcontrol theory is proposed in this project. A special technique called FIS is used in brain image segmentation.The proposed FIS technique plays a promising part in identifying the tumor in brain image. In...

  9. Neural network segmentation of magnetic resonance images

    Science.gov (United States)

    Frederick, Blaise

    1990-07-01

    Neural networks are well adapted to the task of grouping input patterns into subsets which share some similarity. Moreover once trained they can generalize their classification rules to classify new data sets. Sets of pixel intensities from magnetic resonance (MR) images provide a natural input to a neural network by varying imaging parameters MR images can reflect various independent physical parameters of tissues in their pixel intensities. A neural net can then be trained to classify physically similar tissue types based on sets of pixel intensities resulting from different imaging studies on the same subject. A neural network classifier for image segmentation was implemented on a Sun 4/60 and was tested on the task of classifying tissues of canine head MR images. Four images of a transaxial slice with different imaging sequences were taken as input to the network (three spin-echo images and an inversion recovery image). The training set consisted of 691 representative samples of gray matter white matter cerebrospinal fluid bone and muscle preclassified by a neuroscientist. The network was trained using a fast backpropagation algorithm to derive the decision criteria to classify any location in the image by its pixel intensities and the image was subsequently segmented by the classifier. The classifier''s performance was evaluated as a function of network size number of network layers and length of training. A single layer neural network performed quite well at

  10. Deep convolutional networks for pancreas segmentation in CT imaging

    Science.gov (United States)

    Roth, Holger R.; Farag, Amal; Lu, Le; Turkbey, Evrim B.; Summers, Ronald M.

    2015-03-01

    Automatic organ segmentation is an important prerequisite for many computer-aided diagnosis systems. The high anatomical variability of organs in the abdomen, such as the pancreas, prevents many segmentation methods from achieving high accuracies when compared to state-of-the-art segmentation of organs like the liver, heart or kidneys. Recently, the availability of large annotated training sets and the accessibility of affordable parallel computing resources via GPUs have made it feasible for "deep learning" methods such as convolutional networks (ConvNets) to succeed in image classification tasks. These methods have the advantage that used classification features are trained directly from the imaging data. We present a fully-automated bottom-up method for pancreas segmentation in computed tomography (CT) images of the abdomen. The method is based on hierarchical coarse-to-fine classification of local image regions (superpixels). Superpixels are extracted from the abdominal region using Simple Linear Iterative Clustering (SLIC). An initial probability response map is generated, using patch-level confidences and a two-level cascade of random forest classifiers, from which superpixel regions with probabilities larger 0.5 are retained. These retained superpixels serve as a highly sensitive initial input of the pancreas and its surroundings to a ConvNet that samples a bounding box around each superpixel at different scales (and random non-rigid deformations at training time) in order to assign a more distinct probability of each superpixel region being pancreas or not. We evaluate our method on CT images of 82 patients (60 for training, 2 for validation, and 20 for testing). Using ConvNets we achieve maximum Dice scores of an average 68% +/- 10% (range, 43-80%) in testing. This shows promise for accurate pancreas segmentation, using a deep learning approach and compares favorably to state-of-the-art methods.

  11. Automated 3D renal segmentation based on image partitioning

    Science.gov (United States)

    Yeghiazaryan, Varduhi; Voiculescu, Irina D.

    2016-03-01

    Despite several decades of research into segmentation techniques, automated medical image segmentation is barely usable in a clinical context, and still at vast user time expense. This paper illustrates unsupervised organ segmentation through the use of a novel automated labelling approximation algorithm followed by a hypersurface front propagation method. The approximation stage relies on a pre-computed image partition forest obtained directly from CT scan data. We have implemented all procedures to operate directly on 3D volumes, rather than slice-by-slice, because our algorithms are dimensionality-independent. The results picture segmentations which identify kidneys, but can easily be extrapolated to other body parts. Quantitative analysis of our automated segmentation compared against hand-segmented gold standards indicates an average Dice similarity coefficient of 90%. Results were obtained over volumes of CT data with 9 kidneys, computing both volume-based similarity measures (such as the Dice and Jaccard coefficients, true positive volume fraction) and size-based measures (such as the relative volume difference). The analysis considered both healthy and diseased kidneys, although extreme pathological cases were excluded from the overall count. Such cases are difficult to segment both manually and automatically due to the large amplitude of Hounsfield unit distribution in the scan, and the wide spread of the tumorous tissue inside the abdomen. In the case of kidneys that have maintained their shape, the similarity range lies around the values obtained for inter-operator variability. Whilst the procedure is fully automated, our tools also provide a light level of manual editing.

  12. Automatic Music Boundary Detection Using Short Segmental Acoustic Similarity in a Music Piece

    OpenAIRE

    Tanaka Kazuyo; Lee Shi-Wook; Itoh Yoshiaki; Iwabuchi Akira; Kojima Kazunori; Ishigame Masaaki

    2008-01-01

    The present paper proposes a new approach for detecting music boundaries, such as the boundary between music pieces or the boundary between a music piece and a speech section for automatic segmentation of musical video data and retrieval of a designated music piece. The proposed approach is able to capture each music piece using acoustic similarity defined for short-term segments in the music piece. The short segmental acoustic similarity is obtained by means of a new algorithm called segmen...

  13. Integration of Morphology and Graph-based Techniques for Fully Automatic Liver Segmentation

    Directory of Open Access Journals (Sweden)

    Hans Burkhardt

    2010-09-01

    Full Text Available Here a fully 3D algorithm for automatic liver segmentation from CT volumetric datasets is presented. The algorithm starts by smoothing the original volume using anisotropic diffusion. The coarse liver region is obtained from the threshold process that is based on a priori knowledge. Then, several morphological operations is performed such as operating the liver to detach the unwanted region connected to the liver and finding the largest component using the connected component labeling (CCL algorithm. At this stage, both 3D and 2D CCL is done subsequently. However, in 2D CCL, the adjacent slices are also affected from current slice changes. Finally, the boundary of the liver is refined using graph-cuts solver. Our algorithm does not require any user interaction or training datasets to be used. The algorithm has been evaluated on 10 CT scans of the liver and the results are encouraging to poor quality of images.

  14. Exploratory Dijkstra forest based automatic vessel segmentation: applications in video indirect ophthalmoscopy (VIO).

    Science.gov (United States)

    Estrada, Rolando; Tomasi, Carlo; Cabrera, Michelle T; Wallace, David K; Freedman, Sharon F; Farsiu, Sina

    2012-02-01

    We present a methodology for extracting the vascular network in the human retina using Dijkstra's shortest-path algorithm. Our method preserves vessel thickness, requires no manual intervention, and follows vessel branching naturally and efficiently. To test our method, we constructed a retinal video indirect ophthalmoscopy (VIO) image database from pediatric patients and compared the segmentations achieved by our method and state-of-the-art approaches to a human-drawn gold standard. Our experimental results show that our algorithm outperforms prior state-of-the-art methods, for both single VIO frames and automatically generated, large field-of-view enhanced mosaics. We have made the corresponding dataset and source code freely available online. PMID:22312585

  15. Automatic Microaneurysm Detection and Characterization Through Digital Color Fundus Images

    Energy Technology Data Exchange (ETDEWEB)

    Martins, Charles; Veras, Rodrigo; Ramalho, Geraldo; Medeiros, Fatima; Ushizima, Daniela

    2008-08-29

    Ocular fundus images can provide information about retinal, ophthalmic, and even systemic diseases such as diabetes. Microaneurysms (MAs) are the earliest sign of Diabetic Retinopathy, a frequently observed complication in both type 1 and type 2 diabetes. Robust detection of MAs in digital color fundus images is critical in the development of automated screening systems for this kind of disease. Automatic grading of these images is being considered by health boards so that the human grading task is reduced. In this paper we describe segmentation and the feature extraction methods for candidate MAs detection.We show that the candidate MAs detected with the methodology have been successfully classified by a MLP neural network (correct classification of 84percent).

  16. Automatic Contour Extraction from 2D Neuron Images

    CERN Document Server

    Leandro, J J G; Costa, L da F

    2008-01-01

    The current work describes a novel system devised for automatic contour extraction of 2D branching structures images obtained from 3D neurons. Most contour-based methods for neuronal cell shape analysis fall short of suitable representation of such cells because overlaps between neuronal processes prevent traditional contour following algorithms from entering the innermost cell regions. The herein-proposed framework is specifically aimed at the problem of contour following even in presence of multiple overlaps. First, the input image is preprocessed in order to obtain an 8-connected skeleton with one-pixel-wide branches, as well as a set of subtree seed pixels and critical regions (i.e., bifurcations and crossings). Next, for each subtree, the tracking algorithm iteratively labels all valid pixel branches, up to a critical region, where the algorithm determines the suitable direction to proceed. Our algorithm has been found to exhibit robustness even for images with close parallel segments. Experimental resul...

  17. An automatic detection method to the field wheat based on image processing

    Science.gov (United States)

    Wang, Yu; Cao, Zhiguo; Bai, Xiaodong; Yu, Zhenghong; Li, Yanan

    2013-10-01

    The automatic observation of the field crop attracts more and more attention recently. The use of image processing technology instead of the existing manual observation method can observe timely and manage consistently. It is the basis that extracting the wheat from the field wheat images. In order to improve accuracy of the wheat segmentation, a novel two-stage wheat image segmentation method is proposed. Training stage adjusts several key thresholds which will be used in segmentation stage to achieve the best segmentation results, and counts these thresholds. Segmentation stage compares the different values of color index to determine which class of each pixel is. To verify the superiority of the proposed algorithm, we compared our method with other crop segmentation methods. Experiment results shows that the proposed method has the best performance.

  18. Segmentation of retinal blood vessels using normalized Gabor filters and automatic thresholding

    OpenAIRE

    Mandlenkosi Victor Gwetu; Jules Raymond Tapamo; Serestina Viriri

    2014-01-01

    Although computerized retinal image blood vessel segmentation has been extensively researched, there is still room for improvement in the quality of the segmented images. Since retinal image analysis is still widely used in the diagnosis of diabetic retinopathy, efficient and accurate image characterization techniques are required. Previous work has mainly focused on improving segmentation accuracy rates with little regard to the false positives that are produced by illumination variation. T...

  19. Automated Segmentation of Cardiac Magnetic Resonance Images

    DEFF Research Database (Denmark)

    Stegmann, Mikkel Bille; Nilsson, Jens Chr.; Grønning, Bjørn A.

    2001-01-01

    Magnetic resonance imaging (MRI) has been shown to be an accurate and precise technique to assess cardiac volumes and function in a non-invasive manner and is generally considered to be the current gold-standard for cardiac imaging [1]. Measurement of ventricular volumes, muscle mass and function...... is based on determination of the left-ventricular endocardial and epicardial borders. Since manual border detection is laborious, automated segmentation is highly desirable as a fast, objective and reproducible alternative. Automated segmentation will thus enhance comparability between and within cardiac...... studies and increase accuracy by allowing acquisition of thinner MRI-slices. This abstract demonstrates that statistical models of shape and appearance, namely the deformable models: Active Appearance Models, can successfully segment cardiac MRIs....

  20. Text line Segmentation of Curved Document Images

    Directory of Open Access Journals (Sweden)

    Anusree.M

    2014-05-01

    Full Text Available Document image analysis has been widely used in historical and heritage studies, education and digital library. Document image analytical techniques are mainly used for improving the human readability and the OCR quality of the document. During the digitization, camera captured images contain warped document due perspective and geometric distortions. The main difficulty is text line detection in the document. Many algorithms had been proposed to address the problem of printed document text line detection, but they failed to extract text lines in curved document. This paper describes a segmentation technique that detects the curled text line in camera captured document images.

  1. Unsupervised segmentation of medical image based on difference of mutual information

    Institute of Scientific and Technical Information of China (English)

    L(U) Qingwen; CHEN Wufan

    2006-01-01

    In the scope of medical image processing, segmentation is important and difficult. There are still two problems which trouble us in this field. One is how to determine the number of clusters in an image and the other is how to segment medical images containing lesions. A new segmentation method called DDC, based on difference of mutual information (dMI) and pixon, is proposed in this paper. Experiments demonstrate that dMI shows one kind of intrinsic relationship between the segmented image and the original one and so it can be used to well determine the number of clusters. Furthermore, multi-modality medical images with lesions can be automatically and successfully segmented by DDC method.

  2. Generalized expectation-maximization segmentation of brain MR images

    Science.gov (United States)

    Devalkeneer, Arnaud A.; Robe, Pierre A.; Verly, Jacques G.; Phillips, Christophe L. M.

    2006-03-01

    Manual segmentation of medical images is unpractical because it is time consuming, not reproducible, and prone to human error. It is also very difficult to take into account the 3D nature of the images. Thus, semi- or fully-automatic methods are of great interest. Current segmentation algorithms based on an Expectation- Maximization (EM) procedure present some limitations. The algorithm by Ashburner et al., 2005, does not allow multichannel inputs, e.g. two MR images of different contrast, and does not use spatial constraints between adjacent voxels, e.g. Markov random field (MRF) constraints. The solution of Van Leemput et al., 1999, employs a simplified model (mixture coefficients are not estimated and only one Gaussian is used by tissue class, with three for the image background). We have thus implemented an algorithm that combines the features of these two approaches: multichannel inputs, intensity bias correction, multi-Gaussian histogram model, and Markov random field (MRF) constraints. Our proposed method classifies tissues in three iterative main stages by way of a Generalized-EM (GEM) algorithm: (1) estimation of the Gaussian parameters modeling the histogram of the images, (2) correction of image intensity non-uniformity, and (3) modification of prior classification knowledge by MRF techniques. The goal of the GEM algorithm is to maximize the log-likelihood across the classes and voxels. Our segmentation algorithm was validated on synthetic data (with the Dice metric criterion) and real data (by a neurosurgeon) and compared to the original algorithms by Ashburner et al. and Van Leemput et al. Our combined approach leads to more robust and accurate segmentation.

  3. Automatic Contour Extraction from 2D Image

    Directory of Open Access Journals (Sweden)

    Panagiotis GIOANNIS

    2011-03-01

    Full Text Available Aim: To develop a method for automatic contour extraction from a 2D image. Material and Method: The method is divided in two basic parts where the user initially chooses the starting point and the threshold. Finally the method is applied to computed tomography of bone images. Results: An interesting method is developed which can lead to a successful boundary extraction of 2D images. Specifically data extracted from a computed tomography images can be used for 2D bone reconstruction. Conclusions: We believe that such an algorithm or part of it can be applied on several other applications for shape feature extraction in medical image analysis and generally at computer graphics.

  4. Particle Based Image Segmentation with Simulated Annealing

    NARCIS (Netherlands)

    Everts, M.H.; Bekker, H.; Jalba, A.C.; Roerdink, J.B.T.M.

    2007-01-01

    The Charged Particle Model (CPM) is a physically motivated deformable model for shape recovery and segmentation. It simulates a system of charged particles moving in an electric field generated from the input image, whose positions in the equilibrium state are used for curve or surface reconstructio

  5. Robust protein microarray image segmentation using improved seeded region growing algorithm

    Institute of Scientific and Technical Information of China (English)

    Liqiang Wang(王立强); Xuxiang Ni(倪旭翔); Zukang Lu(陆祖康)

    2003-01-01

    Protein microarray technology has recently emerged as a powerful tool for biomedical research. Before automatic analysis the protein microarray images, protein spots in the images must be determined appropriately by spot segmentation algorithm. In this paper, an improved seeded region growing (ISRG)algorithm for protein microarray segmentation is presented, the seeds are obtained by finding the positions of the printed spots, and the protein spot regions are grown through these seeds. The experiment results show that the presented algorithm is accurate for adaptive shape segmentation and robust for protein microarray images contaminated by noise.

  6. Medical image segmentation using improved FCM

    Institute of Scientific and Technical Information of China (English)

    ZHANG XiaoFeng; ZHANG CaiMing; TANG WenJing; WEI ZhenWen

    2012-01-01

    Image segmentation is one of the most important problems in medical image processing,and the existence of partial volume effect and other phenomena makes the problem much more complex. Fuzzy Cmeans,as an effective tool to deal with PVE,however,is faced with great challenges in efficiency.Aiming at this,this paper proposes one improved FCM algorithm based on the histogram of the given image,which will be denoted as HisFCM and divided into two phases.The first phase will retrieve several intervals on which to compute cluster centroids,and the second one will perform image segmentation based on improved FCM algorithm.Compared with FCM and other improved algorithms,HisFCM is of much higher efficiency with satisfying results.Experiments on medical images show that HisFCM can achieve good segmentation results in less than 0.1 second,and can satisfy real-time requirements of medical image processing.

  7. An algorithm of image segmentation for overlapping grain image

    Institute of Scientific and Technical Information of China (English)

    WANG Zhi; JIN Guang; SUN Xiao-wei

    2005-01-01

    Aiming at measurement of granularity size of nonmetal grain, an algorithm of image segmentation and parameter calculation for microscopic overlapping grain image was studied. This algorithm presents some new attributes of graph sequence from discrete attribute of graph,and consequently achieves the geometrical characteristics from input graph, and the new graph sequence in favor of image segmentation is recombined. The conception that image edge denoted with "twin-point" is put forward, base on geometrical characters of point, image edge is transformed into serial edge, and on recombined serial image edge, based on direction vector definition of line and some additional restricted conditions, the segmentation twin-points are searched with, thus image segmentation is accomplished. Serial image edge is transformed into twin-point pattern, to realize calculation of area and granularity size of nonmetal grain. The inkling and uncertainty on selection of structure element which base on mathematical morphology are avoided in this algorithm, and image segmentation and parameter calculation are realized without changing grain's self statistical characters.

  8. Image segmentation of small defects in precision weldments with complex structure

    Institute of Scientific and Technical Information of China (English)

    Shi Duanhu; Gang Tie; Yuan Yuan; Yang Shuangyang

    2007-01-01

    In this paper, the X-ray nondestructive test method of small defects in precision weldments with complex structure was presented. To resolve the difficulty of defect segmentation in variable grey image, the image processing based on Visual Basic programming method was adopted. The methods of automatic contrast and partial grey stretch were used to enhance the X-ray detection image which has relatively low contrast, then automatic threshold method was carried out to segment the two high intensity zones, and weld zones which contain the small defects was extracted. Smoothing and sharpen processing were proceeded on the extracted weld zones, and small defects in X-ray detection image of weldments with complex structure were segmented by using the method of background subtraction in the end. The effects of raster were eliminated, and because of that the image processing was only proceeded on the extracted weld zones, the calculated speed using the above provided algorithm was improved.

  9. Automatic Segmentation of Vertebrae from Radiographs: A Sample-Driven Active Shape Model Approach

    DEFF Research Database (Denmark)

    Mysling, Peter; Petersen, Peter Kersten; Nielsen, Mads;

    2011-01-01

    Segmentation of vertebral contours is an essential task in the design of automatic tools for vertebral fracture assessment. In this paper, we propose a novel segmentation technique which does not require operator interaction. The proposed technique solves the segmentation problem in a hierarchical...... manner. In a first phase, a coarse estimate of the overall spine alignment and the vertebra locations is computed using a shape model sampling scheme. These samples are used to initialize a second phase of active shape model search, under a nonlinear model of vertebra appearance. The search...... is constrained by a conditional shape model, based on the variability of the coarse spine location estimates. The technique is evaluated on a data set of manually annotated lumbar radiographs. The results compare favorably to the previous work in automatic vertebra segmentation, in terms of both segmentation...

  10. Automatic Segmentation and Deep Learning of Bird Sounds

    NARCIS (Netherlands)

    Koops, Hendrik Vincent; Van Balen, J.M.H.; Wiering, F.

    2015-01-01

    We present a study on automatic birdsong recognition with deep neural networks using the BIRDCLEF2014 dataset. Through deep learning, feature hierarchies are learned that represent the data on several levels of abstraction. Deep learning has been applied with success to problems in fields such as mu

  11. Knowledge Automatic Indexing Based on Concept Lexicon and Segmentation Algorithm

    Institute of Scientific and Technical Information of China (English)

    WANG Lan-cheng; JIANG Dan; LE Jia-jin

    2005-01-01

    This paper is based on two existing theories about automatic indexing of thematic knowledge concept. The prohibit-word table with position information has been designed. The improved Maximum Matching-Minimum Backtracking method has been researched. Moreover it has been studied on improved indexing algorithm and application technology based on rules and thematic concept word table.

  12. GPU-based relative fuzzy connectedness image segmentation

    Energy Technology Data Exchange (ETDEWEB)

    Zhuge Ying; Ciesielski, Krzysztof C.; Udupa, Jayaram K.; Miller, Robert W. [Radiation Oncology Branch, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892 (United States); Department of Mathematics, West Virginia University, Morgantown, West Virginia 26506 (United States) and Medical Image Processing Group, Department of Radiology, University of Pennsylvania, Philadelphia, Pennsylvania 19104 (United States); Medical Image Processing Group, Department of Radiology, University of Pennsylvania, Philadelphia, Pennsylvania 19104 (United States); Radiation Oncology Branch, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892 (United States)

    2013-01-15

    Purpose:Recently, clinical radiological research and practice are becoming increasingly quantitative. Further, images continue to increase in size and volume. For quantitative radiology to become practical, it is crucial that image segmentation algorithms and their implementations are rapid and yield practical run time on very large data sets. The purpose of this paper is to present a parallel version of an algorithm that belongs to the family of fuzzy connectedness (FC) algorithms, to achieve an interactive speed for segmenting large medical image data sets. Methods: The most common FC segmentations, optimizing an Script-Small-L {sub {infinity}}-based energy, are known as relative fuzzy connectedness (RFC) and iterative relative fuzzy connectedness (IRFC). Both RFC and IRFC objects (of which IRFC contains RFC) can be found via linear time algorithms, linear with respect to the image size. The new algorithm, P-ORFC (for parallel optimal RFC), which is implemented by using NVIDIA's Compute Unified Device Architecture (CUDA) platform, considerably improves the computational speed of the above mentioned CPU based IRFC algorithm. Results: Experiments based on four data sets of small, medium, large, and super data size, achieved speedup factors of 32.8 Multiplication-Sign , 22.9 Multiplication-Sign , 20.9 Multiplication-Sign , and 17.5 Multiplication-Sign , correspondingly, on the NVIDIA Tesla C1060 platform. Although the output of P-ORFC need not precisely match that of IRFC output, it is very close to it and, as the authors prove, always lies between the RFC and IRFC objects. Conclusions: A parallel version of a top-of-the-line algorithm in the family of FC has been developed on the NVIDIA GPUs. An interactive speed of segmentation has been achieved, even for the largest medical image data set. Such GPU implementations may play a crucial role in automatic anatomy recognition in clinical radiology.

  13. A Novel Approach for Unsupervised Segmentation of Homogeneous Regions in Gray-scale Images

    Institute of Scientific and Technical Information of China (English)

    王郁中; 杨杰; 周大可; 郑元杰

    2004-01-01

    An improved approach for JSEG is presented for unsupervised segmentation of homogeneous regions in gray-scale images. Instead of intensity quantization, an automatic classification method based on scale space-based clustering is used for nonparametric clustering of image data set. Then EM algorithm with classification achieved by space-based classification scheme as initial data used to achieve Gaussian mixture modelling of image data set that is utilized for the calculation of soft J value. Original region growing algorithm is then used to segment the image based on the multiscale soft J-images. Experiments show that the new method can overcome the limitations of JSEG successfully.

  14. PERFORMANCE ANALYSIS OF CLUSTERING BASED IMAGE SEGMENTATION AND OPTIMIZATION METHODS

    Directory of Open Access Journals (Sweden)

    Jaskirat kaur

    2012-05-01

    Full Text Available Partitioning of an image into several constituent components is called image segmentation. Myriad algorithms using different methods have been proposed for image segmentation. Many clustering algorithms and optimization techniques are also being used for segmentation of images. A major challenge in segmentation evaluation comes from the fundamental conflict between generality and objectivity. As there is a glut of image segmentation techniques available today, customer who is the real user of these techniques may get obfuscated. In this paper to address the above described problem some image segmentation techniques are evaluated based on their consistency in different applications. Based on the parameters used quantification of different clustering algorithms is done.

  15. Automatic segmentation and diameter measurement of coronary artery vessels

    Science.gov (United States)

    Zhao, Kun; Tang, Zhenyu; Pauli, Josef

    2011-03-01

    This work presents a hybrid method for 2D artery vessel segmentation and diameter measurement in X-Ray angiograms. The proposed method is novel in that tracking-based and model-based approaches are combined. A robust and efficient tracking template, the "annular template", is devised for vessel tracking. It can readily be applied on X-Ray angiograms without any preprocessing. Starting from an initial tracking point given by the user the tracking algorithm iteratively repositions the annular template and thereby detects the vessel boundaries and possible bifurcations. With a user selected end point the tracking process results in a set of points that describes the contour and topology of an artery vessel segment between the initial and end points. A "boundary correction and interpolation" operation refines the extracted points which initialize the Snakes algorithm. Boundary correction adjusts the points to ensure that they lie on the vessel segment of interest. Boundary interpolation adds more points, so that there are sufficiently many points for the Snakes algorithm to generate a smooth and accurate vessel segmentation. After the application of Snakes the resulting points are sequentially connected to represent the vessel contour. Then, the diameters are measured along the extracted vessel contour. The segmentation and measurement results are compared with manually extracted and measured vessel segments. The average Precision, Recall and Jaccard Index of 21 vessel samples are 91.5%, 92.1% and 84.9%, respectively. Compared with ground truth measurements of diameters the average relative error is 8.2%, and the average absolute error is 1.13 pixels.

  16. AN AUTOMATIC SEGMENTATION METHOD FOR MOVING OBJECTS BASED ON THE SPATIAL-TEMPORAL INFORMATION OF VIDEO

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    The new MPEG-4 video coding standard enables content-based functions. In order to support the new standard, frames should be decomposed into Video Object Planes (VOP),each VOP representing a moving object. This paper proposes an image segmentation method to separate moving objects from image sequences. The proposed method utilizes the spatial-temporal information. Spatial segmentation is applied to divide each image into connected areas and to find precise object boundaries of moving objects. To locate moving objects in image sequences,two consecutive image frames in the temporal direction are examined and a hypothesis testing is performed with Neyman-Pearson criterion. Spatial segmentation produces a spatial segmentation mask, and temporal segmentation yields a change detection mask that indicates moving objects and the background. Then spatial-temporal merging can be used to get the final results. This method has been tested on several images. Experimental results show that this segmentation method is efficient.

  17. Automatic Segmentation for Reach/frequency Estimation of Newspaper Sections and Internet Papers

    DEFF Research Database (Denmark)

    Mortensen, Peter Stendahl; Arnaa, Kristian

    1999-01-01

    This paper will present a new way of estimating reach and frequency without asking the frequency question or conducting double interviewing. Instead, the sample is segmented automatically by a CHAID-analysis, maximising the differences in reading probabilities among the segments. Typically, many...... segments are created, individualising the reading probabilities more than when using frequency groups. Two examples are presented: First, an experiment in which heavy users of the Internet are sampled on the Internet itself. The readers of each "Internet paper" are segmented by variables on their use...

  18. A comparative study on medical image segmentation methods

    OpenAIRE

    Praylin Selva Blessy SELVARAJ ASSLEY; Helen Sulochana CHELLAKKON

    2014-01-01

    Image segmentation plays an important role in medical images. It has been a relevant research area in computer vision and image analysis. Many segmentation algorithms have been proposed for medical images. This paper makes a review on segmentation methods for medical images. In this survey, segmentation methods are divided into five categories: region based, boundary based, model based, hybrid based and atlas based. The five different categories with their principle ideas, advantages and disa...

  19. Segmentation of Medical Image using Clustering and Watershed Algorithms

    OpenAIRE

    M. C.J. Christ; R. M. S. Parvathi

    2011-01-01

    Problem statement: Segmentation plays an important role in medical imaging. Segmentation of an image is the division or separation of the image into dissimilar regions of similar attribute. In this study we proposed a methodology that integrates clustering algorithm and marker controlled watershed segmentation algorithm for medical image segmentation. The use of the conservative watershed algorithm for medical image analysis is pervasive because of its advantages, such as always being able to...

  20. Quality evaluation of image segmentation of brain magnetic resonance for mapping and functional analysis; Avaliacao da qualidade de segmentacao de imagens de ressonancia magnetica cerebral para mapeamento e analise funcional

    Energy Technology Data Exchange (ETDEWEB)

    Maeda, F.K.; Canova, C.V.; Marques da Silva, A.M. [Pontificia Universidade Catolica do Rio Grande do Sul (PUCRS), Porto Alegre, RS (Brazil). Faculdade de Fisica. Nucleo de Pesquisas em Imagens Medicas (NIMed)

    2004-07-01

    The objective of this paper was to evaluate the quality of the brain structure segmentation in magnetic resonance images (MRI) through a comparison between automatic and semiautomatic volumetric segmentation techniques. T1-weighed volumetric acquired stacks of MRI head images from Centro de Diagnostico por Imagens at the Hospital Sao Lucas da PUCRS were used in this study. In the semi-automatic segmentation technique were applied procedures like pre-processing and region-growing using Image J software. The automatic method of volume segmentation was carried through by Statistical Parametric Mapping (SPM), a statistical analysis tool written for software MATLAB. The automatic method of volumetric segmentation had better performance in time. However the quality of image that the half-automatic segmentation presents a better detailing, but it required longer image processing time. The best method to be used, whether automatic or semi-automatic, depends on the region of interest. (author)

  1. Evaluation of an automatic segmentation algorithm for definition of head and neck organs at risk

    International Nuclear Information System (INIS)

    The accurate definition of organs at risk (OARs) is required to fully exploit the benefits of intensity-modulated radiotherapy (IMRT) for head and neck cancer. However, manual delineation is time-consuming and there is considerable inter-observer variability. This is pertinent as function-sparing and adaptive IMRT have increased the number and frequency of delineation of OARs. We evaluated accuracy and potential time-saving of Smart Probabilistic Image Contouring Engine (SPICE) automatic segmentation to define OARs for salivary-, swallowing- and cochlea-sparing IMRT. Five clinicians recorded the time to delineate five organs at risk (parotid glands, submandibular glands, larynx, pharyngeal constrictor muscles and cochleae) for each of 10 CT scans. SPICE was then used to define these structures. The acceptability of SPICE contours was initially determined by visual inspection and the total time to modify them recorded per scan. The Simultaneous Truth and Performance Level Estimation (STAPLE) algorithm created a reference standard from all clinician contours. Clinician, SPICE and modified contours were compared against STAPLE by the Dice similarity coefficient (DSC) and mean/maximum distance to agreement (DTA). For all investigated structures, SPICE contours were less accurate than manual contours. However, for parotid/submandibular glands they were acceptable (median DSC: 0.79/0.80; mean, maximum DTA: 1.5 mm, 14.8 mm/0.6 mm, 5.7 mm). Modified SPICE contours were also less accurate than manual contours. The utilisation of SPICE did not result in time-saving/improve efficiency. Improvements in accuracy of automatic segmentation for head and neck OARs would be worthwhile and are required before its routine clinical implementation

  2. Image Semantic Automatic Annotation by Relevance Feedback

    Institute of Scientific and Technical Information of China (English)

    ZHANG Tong-zhen; SHEN Rui-min

    2007-01-01

    A large semantic gap exists between content based index retrieval (CBIR) and high-level semantic, additional semantic information should be attached to the images, it refers in three respects including semantic representation model, semantic information building and semantic retrieval techniques. In this paper, we introduce an associated semantic network and an automatic semantic annotation system. In the system, a semantic network model is employed as the semantic representation model, it uses semantic keywords, linguistic ontology and low-level features in semantic similarity calculating. Through several times of users' relevance feedback, semantic network is enriched automatically. To speed up the growth of semantic network and get a balance annotation, semantic seeds and semantic loners are employed especially.

  3. Automatic Road Pavement Assessment with Image Processing: Review and Comparison

    Directory of Open Access Journals (Sweden)

    Sylvie Chambon

    2011-01-01

    Full Text Available In the field of noninvasive sensing techniques for civil infrastructures monitoring, this paper addresses the problem of crack detection, in the surface of the French national roads, by automatic analysis of optical images. The first contribution is a state of the art of the image-processing tools applied to civil engineering. The second contribution is about fine-defect detection in pavement surface. The approach is based on a multi-scale extraction and a Markovian segmentation. Third, an evaluation and comparison protocol which has been designed for evaluating this difficult task—the road pavement crack detection—is introduced. Finally, the proposed method is validated, analysed, and compared to a detection approach based on morphological tools.

  4. A Hierarchical Algorithm for Multiphase Texture Image Segmentation

    OpenAIRE

    Yalin Zheng; Ke Chen

    2012-01-01

    Image segmentation is a fundamental task for many computer vision and image processing applications. There exist many useful and reliable models for two-phase segmentation. However, the multiphase segmentation is a more challenging problem than two phase segmentation, mainly due to strong dependence on initialization of solutions. In this paper we propose a reliable hierarchical algorithm for multiphase texture image segmentation by making full use of two-phase texture models in a fuzzy membe...

  5. Image Segmentation Using Pairwise Correlation Clustering

    Directory of Open Access Journals (Sweden)

    H. Umamaheswari,

    2015-05-01

    Full Text Available A pairwise hypergraph based image segmentation framework is formulated in a supervised manner for various images. The image segmentation is to infer the edge label over the pairwise hypergraph by maximizing the normalized cuts. Correlation clustering which is a graph partitioning algorithm, was shown to be effective in a number of applications such as identification, clustering of documents and image segmentation.The partitioning result is derived from a algorithm to partition a pairwise graph into disjoint groups of coherent nodes. In the pairwise correlation clustering, the pairwise graph which is used in the correlation clustering is generalized to a superpixel graph where a node corresponds to a superpixel and a link between adjacent superpixels corresponds to an edge. This pairwise correlation clustering also considers the feature vector which extracts several visual cues from a superpixel, including brightness, color, texture, and shape. Significant progress in clustering has been achieved by algorithms that are based on pairwise affinities between the datasets. The experimental results are shown by calculating the typical cut and inference in an undirected graphical model and datasets.

  6. Automatic Detection, Segmentation and Classification of Retinal Horizontal Neurons in Large-scale 3D Confocal Imagery

    Energy Technology Data Exchange (ETDEWEB)

    Karakaya, Mahmut [ORNL; Kerekes, Ryan A [ORNL; Gleason, Shaun Scott [ORNL; Martins, Rodrigo [St. Jude Children' s Research Hospital; Dyer, Michael [St. Jude Children' s Research Hospital

    2011-01-01

    Automatic analysis of neuronal structure from wide-field-of-view 3D image stacks of retinal neurons is essential for statistically characterizing neuronal abnormalities that may be causally related to neural malfunctions or may be early indicators for a variety of neuropathies. In this paper, we study classification of neuron fields in large-scale 3D confocal image stacks, a challenging neurobiological problem because of the low spatial resolution imagery and presence of intertwined dendrites from different neurons. We present a fully automated, four-step processing approach for neuron classification with respect to the morphological structure of their dendrites. In our approach, we first localize each individual soma in the image by using morphological operators and active contours. By using each soma position as a seed point, we automatically determine an appropriate threshold to segment dendrites of each neuron. We then use skeletonization and network analysis to generate the morphological structures of segmented dendrites, and shape-based features are extracted from network representations of each neuron to characterize the neuron. Based on qualitative results and quantitative comparisons, we show that we are able to automatically compute relevant features that clearly distinguish between normal and abnormal cases for postnatal day 6 (P6) horizontal neurons.

  7. Segmentation and registration duality from echographic images by use of physiological and morphological knowledge; Segmentation et recalage d`images echographiques par utilisation de connaissances physiologiques et morphologiques

    Energy Technology Data Exchange (ETDEWEB)

    Ionescu, G

    1998-12-04

    Echographic imaging could potentially play a major role in the field of Computer Assisted Surgery (CAS). For doctors and surgeons to make full use of tool in planning and executing surgical operations, they also need user-friendly automatic software based on fast, precise and reliable algorithms. The main goal of this thesis is to take advantage of the segmentation/registration duality to extract the relevant information from echo graphical images. This information will allow the precise and automatic registration both of anatomical structures contained in the pre-operative model and of per-operative data contained in echographic images. The result of registration will be further to guide a computer-assisted tool. In the first part we propose different methods for filtering, segmentation and calibration of echographic images. The development of fast, precise and reliable algorithms is emphasized. The second part concerns the segmentation-registration duality and the corrections of elastic deformations of soft tissues. High-level segmentation algorithms for echographic images were developed. They are based on results of low -level segmentation, a priori anatomical knowledge as well as on information provided by the pre-operative model. The third part deals with detailed descriptions of applications and interpretation of results. The cases studied include: screwing inside the vertebral pedicles, ilio-sacral screwing, prostatic radiotherapy and puncture of pericardial effusion. Future developments for this approach are discussed. (author)

  8. Automatic Segmentation of Raw LIDAR Data for Extraction of Building Roofs

    OpenAIRE

    Mohammad Awrangjeb; Fraser, Clive S.

    2014-01-01

    Automatic extraction of building roofs from remote sensing data is important for many applications, including 3D city modeling. This paper proposes a new method for automatic segmentation of raw LIDAR (light detection and ranging) data. Using the ground height from a DEM (digital elevation model), the raw LIDAR points are separated into two groups. The first group contains the ground points that form a “building mask”. The second group contains non-ground points that are clustered using the b...

  9. Model-based segmentation of medical x-ray images

    Science.gov (United States)

    Hoare, Frederick; de Jager, Gerhard

    1994-03-01

    This paper discusses the methods used to model the structure of x-ray images of the human body and the individual organs within the body. A generic model of a region is built up from x-ray images to aid in automatic segmentation. By using the ribs from a chest x-ray image as an example, it is shown how models of the different organs can be generated. The generic model of the chest region is built up by using a priori knowledge of the physical structure of the human body. The models of the individual organs are built up by using knowledge of the structure of the organs as well as other information contained within each image. Each image is unique and therefore information from the region surrounding the organs in the image has to be taken into account when adapting the generic model to individual images. Results showing the application of these techniques to x-ray images of the chest region, the labelling of individual organs, and the generation of models of the ribs are presented.

  10. Automatic Lumbar Spondylolisthesis Measurement in CT Images.

    Science.gov (United States)

    Liao, Shu; Zhan, Yiqiang; Dong, Zhongxing; Yan, Ruyi; Gong, Liyan; Zhou, Xiang Sean; Salganicoff, Marcos; Fei, Jun

    2016-07-01

    Lumbar spondylolisthesis is one of the most common spinal diseases. It is caused by the anterior shift of a lumbar vertebrae relative to subjacent vertebrae. In current clinical practices, staging of spondylolisthesis is often conducted in a qualitative way. Although meyerding grading opens the door to stage spondylolisthesis in a more quantitative way, it relies on the manual measurement, which is time consuming and irreproducible. Thus, an automatic measurement algorithm becomes desirable for spondylolisthesis diagnosis and staging. However, there are two challenges. 1) Accurate detection of the most anterior and posterior points on the superior and inferior surfaces of each lumbar vertebrae. Due to the small size of the vertebrae, slight errors of detection may lead to significant measurement errors, hence, wrong disease stages. 2) Automatic localize and label each lumbar vertebrae is required to provide the semantic meaning of the measurement. It is difficult since different lumbar vertebraes have high similarity of both shape and image appearance. To resolve these challenges, a new auto measurement framework is proposed with two major contributions: First, a learning based spine labeling method that integrates both the image appearance and spine geometry information is designed to detect lumbar vertebrae. Second, a hierarchical method using both the population information from atlases and domain-specific information in the target image is proposed for most anterior and posterior points positioning. Validated on 258 CT spondylolisthesis patients, our method shows very similar results to manual measurements by radiologists and significantly increases the measurement efficiency. PMID:26849859

  11. Dosimetric Evaluation of Automatic Segmentation for Adaptive IMRT for Head-and-Neck Cancer

    International Nuclear Information System (INIS)

    Purpose: Adaptive planning to accommodate anatomic changes during treatment requires repeat segmentation. This study uses dosimetric endpoints to assess automatically deformed contours. Methods and Materials: Sixteen patients with head-and-neck cancer had adaptive plans because of anatomic change during radiotherapy. Contours from the initial planning computed tomography (CT) were deformed to the mid-treatment CT using an intensity-based free-form registration algorithm then compared with the manually drawn contours for the same CT using the Dice similarity coefficient and an overlap index. The automatic contours were used to create new adaptive plans. The original and automatic adaptive plans were compared based on dosimetric outcomes of the manual contours and on plan conformality. Results: Volumes from the manual and automatic segmentation were similar; only the gross tumor volume (GTV) was significantly different. Automatic plans achieved lower mean coverage for the GTV: V95: 98.6 ± 1.9% vs. 89.9 ± 10.1% (p = 0.004) and clinical target volume: V95: 98.4 ± 0.8% vs. 89.8 ± 6.2% (p 3 of the spinal cord 39.9 ± 3.7 Gy vs. 42.8 ± 5.4 Gy (p = 0.034), but no difference for the remaining structures. Conclusions: Automatic segmentation is not robust enough to substitute for physician-drawn volumes, particularly for the GTV. However, it generates normal structure contours of sufficient accuracy when assessed by dosimetric end points.

  12. Liver segmentation in MRI: a fully automatic method based on stochastic partitions

    OpenAIRE

    López-Mir, Fernando; Naranjo Ornedo, Valeriana; Angulo, J.; Alcañiz Raya, Mariano Luis; Luna, L.

    2014-01-01

    There are few fully automated methods for liver segmentation in magnetic resonance images (MRI) despite the benefits of this type of acquisition in comparison to other radiology techniques such as computed tomography (CT). Motivated by medical requirements, liver segmentation in MRI has been carried out. For this purpose, we present a new method for liver segmentation based on the watershed transform and stochastic partitions. The classical watershed over-segmentation is reduced using a marke...

  13. Multilevel Threshold Based Gray Scale Image Segmentation using Cuckoo Search

    OpenAIRE

    Samantaa, Sourav; Dey, Nilanjan; Das, Poulami; Acharjee, Suvojit; Chaudhuri, Sheli Sinha

    2013-01-01

    Image Segmentation is a technique of partitioning the original image into some distinct classes. Many possible solutions may be available for segmenting an image into a certain number of classes, each one having different quality of segmentation. In our proposed method, multilevel thresholding technique has been used for image segmentation. A new approach of Cuckoo Search (CS) is used for selection of optimal threshold value. In other words, the algorithm is used to achieve the best solution ...

  14. ENHANCED GRAPH BASED NORMALIZED CUT METHODS FOR IMAGE SEGMENTATION

    OpenAIRE

    S.D. Kapade; S.M. Khairnar; B.S. Chaudhari

    2014-01-01

    Image segmentation is one of the important steps in digital image processing. Several algorithms are available for segmenting the images, posing many challenges such as precise criteria and efficient computations. Most of the graph based methods used for segmentation depend on local properties of graphs without considering global impressions of image, which ultimately limits segmentation quality. In this paper, we propose an enhanced graph based normalized cut method for extracting global imp...

  15. Semi-automatic liver tumor segmentation with hidden Markov measure field model and non-parametric distribution estimation.

    Science.gov (United States)

    Häme, Yrjö; Pollari, Mika

    2012-01-01

    A novel liver tumor segmentation method for CT images is presented. The aim of this work was to reduce the manual labor and time required in the treatment planning of radiofrequency ablation (RFA), by providing accurate and automated tumor segmentations reliably. The developed method is semi-automatic, requiring only minimal user interaction. The segmentation is based on non-parametric intensity distribution estimation and a hidden Markov measure field model, with application of a spherical shape prior. A post-processing operation is also presented to remove the overflow to adjacent tissue. In addition to the conventional approach of using a single image as input data, an approach using images from multiple contrast phases was developed. The accuracy of the method was validated with two sets of patient data, and artificially generated samples. The patient data included preoperative RFA images and a public data set from "3D Liver Tumor Segmentation Challenge 2008". The method achieved very high accuracy with the RFA data, and outperformed other methods evaluated with the public data set, receiving an average overlap error of 30.3% which represents an improvement of 2.3% points to the previously best performing semi-automatic method. The average volume difference was 23.5%, and the average, the RMS, and the maximum surface distance errors were 1.87, 2.43, and 8.09 mm, respectively. The method produced good results even for tumors with very low contrast and ambiguous borders, and the performance remained high with noisy image data.

  16. Mixture Segmentation of Multispectral MR Brain Images for Multiple Sclerosis

    Directory of Open Access Journals (Sweden)

    Lihong Li

    2005-04-01

    Full Text Available We present a fully automatic mixture model-based tissue classification of multispectral (T1- and T2-weighted magnetic resonance (MR brain images. Unlike the conventional hard classification with a unique label for each voxel, our method models a mixture to estimate the partial volumes (PV of multiple tissue types within a voxel. A new Markov random field (MRF model is proposed to reflect the spatial information of tissue mixtures. A mixture classification algorithm is performed by the maximum a posterior (MAP criterion, where the expectation maximization (EM algorithm is utilized to estimate model parameters. The algorithm interleaves segmentation with parameter estimation and improves classification in an iterative manner. The presented method is evaluated by clinical MR image datasets for quantification of brain volumes and multiple sclerosis (MS.

  17. Automated bone segmentation from dental CBCT images using patch-based sparse representation and convex optimization

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Li; Gao, Yaozong; Shi, Feng; Liao, Shu; Li, Gang [Department of Radiology and BRIC, University of North Carolina at Chapel Hill, North Carolina 27599 (United States); Chen, Ken Chung [Department of Oral and Maxillofacial Surgery, Houston Methodist Hospital Research Institute, Houston, Texas 77030 and Department of Stomatology, National Cheng Kung University Medical College and Hospital, Tainan, Taiwan 70403 (China); Shen, Steve G. F.; Yan, Jin [Department of Oral and Craniomaxillofacial Surgery and Science, Shanghai Ninth People' s Hospital, Shanghai Jiao Tong University College of Medicine, Shanghai, China 200011 (China); Lee, Philip K. M.; Chow, Ben [Hong Kong Dental Implant and Maxillofacial Centre, Hong Kong, China 999077 (China); Liu, Nancy X. [Department of Oral and Maxillofacial Surgery, Houston Methodist Hospital Research Institute, Houston, Texas 77030 and Department of Oral and Maxillofacial Surgery, Peking University School and Hospital of Stomatology, Beijing, China 100050 (China); Xia, James J. [Department of Oral and Maxillofacial Surgery, Houston Methodist Hospital Research Institute, Houston, Texas 77030 (United States); Department of Surgery (Oral and Maxillofacial Surgery), Weill Medical College, Cornell University, New York, New York 10065 (United States); Department of Oral and Craniomaxillofacial Surgery and Science, Shanghai Ninth People' s Hospital, Shanghai Jiao Tong University College of Medicine, Shanghai, China 200011 (China); Shen, Dinggang, E-mail: dgshen@med.unc.edu [Department of Radiology and BRIC, University of North Carolina at Chapel Hill, North Carolina 27599 and Department of Brain and Cognitive Engineering, Korea University, Seoul, 136701 (Korea, Republic of)

    2014-04-15

    Purpose: Cone-beam computed tomography (CBCT) is an increasingly utilized imaging modality for the diagnosis and treatment planning of the patients with craniomaxillofacial (CMF) deformities. Accurate segmentation of CBCT image is an essential step to generate three-dimensional (3D) models for the diagnosis and treatment planning of the patients with CMF deformities. However, due to the poor image quality, including very low signal-to-noise ratio and the widespread image artifacts such as noise, beam hardening, and inhomogeneity, it is challenging to segment the CBCT images. In this paper, the authors present a new automatic segmentation method to address these problems. Methods: To segment CBCT images, the authors propose a new method for fully automated CBCT segmentation by using patch-based sparse representation to (1) segment bony structures from the soft tissues and (2) further separate the mandible from the maxilla. Specifically, a region-specific registration strategy is first proposed to warp all the atlases to the current testing subject and then a sparse-based label propagation strategy is employed to estimate a patient-specific atlas from all aligned atlases. Finally, the patient-specific atlas is integrated into amaximum a posteriori probability-based convex segmentation framework for accurate segmentation. Results: The proposed method has been evaluated on a dataset with 15 CBCT images. The effectiveness of the proposed region-specific registration strategy and patient-specific atlas has been validated by comparing with the traditional registration strategy and population-based atlas. The experimental results show that the proposed method achieves the best segmentation accuracy by comparison with other state-of-the-art segmentation methods. Conclusions: The authors have proposed a new CBCT segmentation method by using patch-based sparse representation and convex optimization, which can achieve considerably accurate segmentation results in CBCT

  18. Automated bone segmentation from dental CBCT images using patch-based sparse representation and convex optimization

    International Nuclear Information System (INIS)

    Purpose: Cone-beam computed tomography (CBCT) is an increasingly utilized imaging modality for the diagnosis and treatment planning of the patients with craniomaxillofacial (CMF) deformities. Accurate segmentation of CBCT image is an essential step to generate three-dimensional (3D) models for the diagnosis and treatment planning of the patients with CMF deformities. However, due to the poor image quality, including very low signal-to-noise ratio and the widespread image artifacts such as noise, beam hardening, and inhomogeneity, it is challenging to segment the CBCT images. In this paper, the authors present a new automatic segmentation method to address these problems. Methods: To segment CBCT images, the authors propose a new method for fully automated CBCT segmentation by using patch-based sparse representation to (1) segment bony structures from the soft tissues and (2) further separate the mandible from the maxilla. Specifically, a region-specific registration strategy is first proposed to warp all the atlases to the current testing subject and then a sparse-based label propagation strategy is employed to estimate a patient-specific atlas from all aligned atlases. Finally, the patient-specific atlas is integrated into amaximum a posteriori probability-based convex segmentation framework for accurate segmentation. Results: The proposed method has been evaluated on a dataset with 15 CBCT images. The effectiveness of the proposed region-specific registration strategy and patient-specific atlas has been validated by comparing with the traditional registration strategy and population-based atlas. The experimental results show that the proposed method achieves the best segmentation accuracy by comparison with other state-of-the-art segmentation methods. Conclusions: The authors have proposed a new CBCT segmentation method by using patch-based sparse representation and convex optimization, which can achieve considerably accurate segmentation results in CBCT

  19. A comparative study on medical image segmentation methods

    Directory of Open Access Journals (Sweden)

    Praylin Selva Blessy SELVARAJ ASSLEY

    2014-03-01

    Full Text Available Image segmentation plays an important role in medical images. It has been a relevant research area in computer vision and image analysis. Many segmentation algorithms have been proposed for medical images. This paper makes a review on segmentation methods for medical images. In this survey, segmentation methods are divided into five categories: region based, boundary based, model based, hybrid based and atlas based. The five different categories with their principle ideas, advantages and disadvantages in segmenting different medical images are discussed.

  20. Digital Dental X-Ray Image Segmentation and Feature Extraction

    OpenAIRE

    Abdolvahab Ehsani Rad; Mohd. Shafry Mohd. Rahim; Alireza Norouzi

    2013-01-01

    The process of analysis of such images is important in order to improve quantify medical imaging systems. It is significant to analysis the dental x-ray images we need features of image. In this paper we present a method for segmentation and feature extraction of dental x-ray images. The proposed method has been implemented by using level-set method for segmentation after image enhancement and illustrate contour for teeth to complete the segmentation step. Furthermore, we extracted multiple f...

  1. An Improved Image Segmentation Based on Mean Shift Algorithm

    Institute of Scientific and Technical Information of China (English)

    CHENHanfeng; QIFeihu

    2003-01-01

    Gray image segmentation is to segment an image into some homogeneous regions and only one gray level is defined for each region as the result. These grayl evels are called major gray levels. Mean shift algorithm(MSA) has shown its efficiency in image segmentation. An improved gray image segmentation method based on MSAis proposed in this paper since usual image segmentation methods based on MSA often fail in segmenting imageswith weak edges. Corrupted block and its J-value are defined firstly in the proposed method. Then, J-matrix gotten from corrupted blocks are proposed to measure whether weak edges appear in the image. According to the J-matrix, major gray levels gotten with usual segmen-tation methods based on MSA are augmented and corre-sponding allocation windows are modified to detect weak edges. Experimental results demonstrate the effectiveness of the proposed method in gray image segmentation.

  2. A New Image Segmentation Algorithm and It’s Application in lettuce object segmentation

    Directory of Open Access Journals (Sweden)

    Xiaodong Zhang

    2012-07-01

    Full Text Available Lettuce image segmentation which based on computer image processing is the premise of non-destructive testing of lettuce quality. The traditional 2-D maximum entropy algorithm has some faults, such as low accuracy of segmentation, slow speed, and poor anti-noise ability. As a result, it leads to the problems of poor image segmentation and low efficiency. An improved 2-D maximum entropy algorithm is presented in this paper. It redistricts segmented regions and furtherly classifies the segmented image pixels with the method of the minimum fuzzy entropy, and reduces the impact of noise points, as a result the image segmentation accuracy is improved. The improved algorithm is used to lettuce object segmentation, and the experimental results show that the improved segmentation algorithm has many advantages compared with the traditional 2-D maximum entropy algorithm, such as less false interference, strong anti-noise ability, good robustness and validity.  

  3. Image segmentation using association rule features.

    Science.gov (United States)

    Rushing, John A; Ranganath, Heggere; Hinke, Thomas H; Graves, Sara J

    2002-01-01

    A new type of texture feature based on association rules is described. Association rules have been used in applications such as market basket analysis to capture relationships present among items in large data sets. It is shown that association rules can be adapted to capture frequently occurring local structures in images. The frequency of occurrence of these structures can be used to characterize texture. Methods for segmentation of textured images based on association rule features are described. Simulation results using images consisting of man made and natural textures show that association rule features perform well compared to other widely used texture features. Association rule features are used to detect cumulus cloud fields in GOES satellite images and are found to achieve higher accuracy than other statistical texture features for this problem.

  4. Automatic image classification for the urinoculture screening.

    Science.gov (United States)

    Andreini, Paolo; Bonechi, Simone; Bianchini, Monica; Garzelli, Andrea; Mecocci, Alessandro

    2016-03-01

    Urinary tract infections (UTIs) are considered to be the most common bacterial infection and, actually, it is estimated that about 150 million UTIs occur world wide yearly, giving rise to roughly $6 billion in healthcare expenditures and resulting in 100,000 hospitalizations. Nevertheless, it is difficult to carefully assess the incidence of UTIs, since an accurate diagnosis depends both on the presence of symptoms and on a positive urinoculture, whereas in most outpatient settings this diagnosis is made without an ad hoc analysis protocol. On the other hand, in the traditional urinoculture test, a sample of midstream urine is put onto a Petri dish, where a growth medium favors the proliferation of germ colonies. Then, the infection severity is evaluated by a visual inspection of a human expert, an error prone and lengthy process. In this paper, we propose a fully automated system for the urinoculture screening that can provide quick and easily traceable results for UTIs. Based on advanced image processing and machine learning tools, the infection type recognition, together with the estimation of the bacterial load, can be automatically carried out, yielding accurate diagnoses. The proposed AID (Automatic Infection Detector) system provides support during the whole analysis process: first, digital color images of Petri dishes are automatically captured, then specific preprocessing and spatial clustering algorithms are applied to isolate the colonies from the culture ground and, finally, an accurate classification of the infections and their severity evaluation are performed. The AID system speeds up the analysis, contributes to the standardization of the process, allows result repeatability, and reduces the costs. Moreover, the continuous transition between sterile and external environments (typical of the standard analysis procedure) is completely avoided. PMID:26780249

  5. Texture Image Segmentation Based on Nonlinear Diffusion%基于非线性扩散的纹理分割

    Institute of Scientific and Technical Information of China (English)

    张煜

    2008-01-01

    A texture image segmentation based on nonlinear diffusion is presented. The scale of texture can be measured during the process of nonlinear diffusion. A smooth 5-channel vector image with edge preserved, which is composed of inten- sity, scale and orientation of texture image, can be achieved by coupled nonlinear diffusion. A multi-channel statistical region active contour is employed to segment this vector image. The method can be seen as a kind of unsupervised segmentation because parameters are not sensitive to different texture images. Experimental results show its high efficiency in the semi- automatic extraction of texture image.

  6. Is STAPLE algorithm confident to assess segmentation methods in PET imaging?

    Science.gov (United States)

    Dewalle-Vignion, Anne-Sophie; Betrouni, Nacim; Baillet, Clio; Vermandel, Maximilien

    2015-12-01

    Accurate tumor segmentation in [18F]-fluorodeoxyglucose positron emission tomography is crucial for tumor response assessment and target volume definition in radiation therapy. Evaluation of segmentation methods from clinical data without ground truth is usually based on physicians’ manual delineations. In this context, the simultaneous truth and performance level estimation (STAPLE) algorithm could be useful to manage the multi-observers variability. In this paper, we evaluated how this algorithm could accurately estimate the ground truth in PET imaging. Complete evaluation study using different criteria was performed on simulated data. The STAPLE algorithm was applied to manual and automatic segmentation results. A specific configuration of the implementation provided by the Computational Radiology Laboratory was used. Consensus obtained by the STAPLE algorithm from manual delineations appeared to be more accurate than manual delineations themselves (80% of overlap). An improvement of the accuracy was also observed when applying the STAPLE algorithm to automatic segmentations results. The STAPLE algorithm, with the configuration used in this paper, is more appropriate than manual delineations alone or automatic segmentations results alone to estimate the ground truth in PET imaging. Therefore, it might be preferred to assess the accuracy of tumor segmentation methods in PET imaging.

  7. Comparison of segmentation algorithms for cow contour extraction from natural barn background in side view images

    NARCIS (Netherlands)

    Hertem, van T.; Alchanatis, V.; Antler, A.; Maltz, E.; Halachmi, I.; Schlageter Tello, A.A.; Lokhorst, C.; Viazzi, S.; Romanini, C.E.B.; Pluk, A.; Bahr, C.; Berckmans, D.

    2013-01-01

    Computer vision techniques are a means to extract individual animal information such as weight, activity and calving time in intensive farming. Automatic detection requires adequate image pre-processing such as segmentation to precisely distinguish the animal from its background. For some analyses s

  8. Image segmentation of em bryonic plant cell using pulse-coupled neural networks

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Traditional image segmentation algorithms exhibit weak performance for plant cells which have complex structure. On the other hand, pulse-coupled neural network (PCNN) based on Eckhorn's model of the cat visual cortex should be suitable to the segmentation of plant cell image.But the present theories cannot explain the relationship between the parameters of PCNN mathematical model and the effect of segmentation. Satisfactory results usually require time-consuming selection of experimental parameters. Meanwhile, in a proper, selected parametric model, the number of iteration determines the segmented effect evaluated by visual judgment, which decreases the efficiency of image segmentation. To avoid these flaws, this note proposes a new PCNN algorithm for automatically segmenting plant embryonic cell image based on the maximum entropy principle. The algorithm produces a desirable result. In addition, a model with proper parameters can automatically determine the number of iteration, avoid visual judgment, enhance the speed of segmentation and will be utilized subsequently by accurate quantitative analysis of micro-molecules of plant cell. So this algorithm is valuable for theoretical investigation and application of PCNN.``

  9. Optimal retinal cyst segmentation from OCT images

    Science.gov (United States)

    Oguz, Ipek; Zhang, Li; Abramoff, Michael D.; Sonka, Milan

    2016-03-01

    Accurate and reproducible segmentation of cysts and fluid-filled regions from retinal OCT images is an important step allowing quantification of the disease status, longitudinal disease progression, and response to therapy in wet-pathology retinal diseases. However, segmentation of fluid-filled regions from OCT images is a challenging task due to their inhomogeneous appearance, the unpredictability of their number, size and location, as well as the intensity profile similarity between such regions and certain healthy tissue types. While machine learning techniques can be beneficial for this task, they require large training datasets and are often over-fitted to the appearance models of specific scanner vendors. We propose a knowledge-based approach that leverages a carefully designed cost function and graph-based segmentation techniques to provide a vendor-independent solution to this problem. We illustrate the results of this approach on two publicly available datasets with a variety of scanner vendors and retinal disease status. Compared to a previous machine-learning based approach, the volume similarity error was dramatically reduced from 81:3+/-56:4% to 22:2+/-21:3% (paired t-test, p << 0:001).

  10. Embedded Implementation of VHR Satellite Image Segmentation.

    Science.gov (United States)

    Li, Chao; Balla-Arabé, Souleymane; Ginhac, Dominique; Yang, Fan

    2016-01-01

    Processing and analysis of Very High Resolution (VHR) satellite images provide a mass of crucial information, which can be used for urban planning, security issues or environmental monitoring. However, they are computationally expensive and, thus, time consuming, while some of the applications, such as natural disaster monitoring and prevention, require high efficiency performance. Fortunately, parallel computing techniques and embedded systems have made great progress in recent years, and a series of massively parallel image processing devices, such as digital signal processors or Field Programmable Gate Arrays (FPGAs), have been made available to engineers at a very convenient price and demonstrate significant advantages in terms of running-cost, embeddability, power consumption flexibility, etc. In this work, we designed a texture region segmentation method for very high resolution satellite images by using the level set algorithm and the multi-kernel theory in a high-abstraction C environment and realize its register-transfer level implementation with the help of a new proposed high-level synthesis-based design flow. The evaluation experiments demonstrate that the proposed design can produce high quality image segmentation with a significant running-cost advantage. PMID:27240370

  11. Color Image Segmentation Method Based on Improved Spectral Clustering Algorithm

    Directory of Open Access Journals (Sweden)

    Dong Qin

    2014-08-01

    Full Text Available Contraposing to the features of image data with high sparsity of and the problems on determination of clustering numbers, we try to put forward an color image segmentation algorithm, combined with semi-supervised machine learning technology and spectral graph theory. By the research of related theories and methods of spectral clustering algorithms, we introduce information entropy conception to design a method which can automatically optimize the scale parameter value. So it avoids the unstability in clustering result of the scale parameter input manually. In addition, we try to excavate available priori information existing in large number of non-generic data and apply semi-supervised algorithm to improve the clustering performance for rare class. We also use added tag data to compute similar matrix and perform clustering through FKCM algorithms. By the simulation of standard dataset and image segmentation, the experiments demonstrate our algorithm has overcome the defects of traditional spectral clustering methods, which are sensitive to outliers and easy to fall into local optimum, and also poor in the convergence rate

  12. Cerebella segmentation on MR images of pediatric patients with medulloblastoma

    Science.gov (United States)

    Shan, Zu Y.; Ji, Qing; Glass, John; Gajjar, Amar; Reddick, Wilburn E.

    2005-04-01

    In this study, an automated method has been developed to identify the cerebellum from T1-weighted MR brain images of patients with medulloblastoma. A new objective function that is similar to Gibbs free energy in classic physics was defined; and the brain structure delineation was viewed as a process of minimizing Gibbs free energy. We used a rigid-body registration and an active contour (snake) method to minimize the Gibbs free energy in this study. The method was applied to 20 patient data sets to generate cerebellum images and volumetric results. The generated cerebellum images were compared with two manually drawn results. Strong correlations were found between the automatically and manually generated volumetric results, the correlation coefficients with each of manual results were 0.971 and 0.974, respectively. The average Jaccard similarities with each of two manual results were 0.89 and 0.88, respectively. The average Kappa indexes with each of two manual results were 0.94 and 0.93, respectively. These results showed this method was both robust and accurate for cerebellum segmentation. The method may be applied to various research and clinical investigation in which cerebellum segmentation and quantitative MR measurement of cerebellum are needed.

  13. Ceramography and segmentation of polycristalline ceramics: application to grain size analysis by automatic methods

    Energy Technology Data Exchange (ETDEWEB)

    Arnould, X.; Coster, M.; Chermant, J.L.; Chermant, L. [LERMAT, ISMRA, Caen (France); Chartier, T. [SPCTS, ENSCI, Limoges (France)

    2002-07-01

    The knowledge of the mean grain size of ceramics is a very important problem to solve in the ceramic industry. Some specific methods of segmentation are presented to analyse, by an automatic way, the granulometry and morphological parameters of ceramic materials. Example presented concerns cerine materials. Such investigations lead to important information on the sintering process. (orig.)

  14. Robust automatic high resolution segmentation of SOFC anode porosity in 3D

    DEFF Research Database (Denmark)

    Jørgensen, Peter Stanley; Bowen, Jacob R.

    2008-01-01

    anode in 3D. The technique is based on numerical approximations to partial differential equations to evolve a 3D surface to the desired phase boundary. Vector fields derived from the experimentally acquired data are used as the driving force. The automatic segmentation compared to manual delineation...

  15. Blood Vessel Segmentation Using Moving-Window Robust Automatic Threshold Selection

    NARCIS (Netherlands)

    Wilkinson, Michael H.F.; Wijbenga, Tsjipke; Vries, Gijs de; Westenberg, Michel A.

    2003-01-01

    Two moving-window methods, using either flat or Gaussian weighted windows, for local thresholding with Robust Automatic Threshold Selection are developed. The results show that fast segmentation of blood vessels against a varying background and noise is possible at modest computational cost. Volumes

  16. Towards automatic quantitative analysis of cardiac MR perfusion images

    NARCIS (Netherlands)

    Breeuwer, M.; Quist, M.; Spreeuwers, L.J.; Paetsch, I.; Al-Saadi, N.; Nagel, E.

    2001-01-01

    Magnetic Resonance Imaging (MRI) is a powerful technique for imaging cardiovascular diseases. The introduction of cardiovascular MRI into clinical practice is however hampered by the lack of efficient and reliable automatic image analysis methods. This paper focuses on the automatic evaluation of th

  17. Automatic diagnosis of retinal diseases from color retinal images

    CERN Document Server

    Jayanthi, D; SwarnaParvathi, S

    2010-01-01

    Teleophthalmology holds a great potential to improve the quality, access, and affordability in health care. For patients, it can reduce the need for travel and provide the access to a superspecialist. Ophthalmology lends itself easily to telemedicine as it is a largely image based diagnosis. The main goal of the proposed system is to diagnose the type of disease in the retina and to automatically detect and segment retinal diseases without human supervision or interaction. The proposed system will diagnose the disease present in the retina using a neural network based classifier.The extent of the disease spread in the retina can be identified by extracting the textural features of the retina. This system will diagnose the following type of diseases: Diabetic Retinopathy and Drusen.

  18. Near-Tubular Fiber Bundle Segmentation for Diffusion Weighted Imaging: Segmentation Through Frame Reorientation

    OpenAIRE

    Niethammer, Marc; Zach, Christopher; Melonakos, John; Tannenbaum, Allen

    2008-01-01

    This paper proposes a methodology to segment near-tubular fiber bundles from diffusion weighted magnetic resonance images (DW-MRI). Segmentation is simplified by locally reorienting diffusion information based on large-scale fiber bundle geometry. Segmentation is achieved through simple global statistical modeling of diffusion orientation. Utilizing a modification of a recent segmentation approach by Bresson et al. allows for a convex optimization formulation of the segmentation problem, comb...

  19. A New Image Threshold Segmentation based on Fuzzy Entropy and Improved Intelligent Optimization Algorithm

    Directory of Open Access Journals (Sweden)

    Yong-sheng Wang

    2014-04-01

    Full Text Available Image segmentation is one of the key techniques in the field of image understanding and computer vision. To determine the optimal threshold in image segmentation, an effective image threshold segmentation method based on fuzzy logic is presented. A new kind of fuzzy entropy is defined, that is not only related to the membership, but also related to probability distribution. According to the maximum entropy criterion, the improved particle swarm optimization algorithm based on chaos bee colony is used to determine the optimal parameters of membership function to automatically determine the optimal threshold segmentation. The experiment results show that proposed algorithm based on fuzzy entropy and chaos bee colony particle swarm optimization has good performance.

  20. Improving Quantitative Measurements using Different Segmentation Techniques for Satellite Images

    OpenAIRE

    K. Ravi Kumar; K. Kavindra Kumar; R.S.V.M.Krishna; P. K. Bharadwaj

    2011-01-01

    Image segmentation is the most practical approach among all virtually automated image recognition systems. Feature extraction and recognition have numerous applications on telecommunication, weather forecasting, environment exploration and medical diagnosis. This paper deals with different image segmentation algorithms. The quality of satellite image is affected by atmosphere, temperature etc. By the usage of various segmentation techniques ,the image is divided into parts which have strong ...

  1. A Review on Automatic Mammographic Density and Parenchymal Segmentation

    OpenAIRE

    Wenda He; Arne Juette; Denton, Erika R. E.; Arnau Oliver; Robert Martí; Reyer Zwiggelaar

    2015-01-01

    Breast cancer is the most frequently diagnosed cancer in women. However, the exact cause(s) of breast cancer still remains unknown. Early detection, precise identification of women at risk, and application of appropriate disease prevention measures are by far the most effective way to tackle breast cancer. There are more than 70 common genetic susceptibility factors included in the current non-image-based risk prediction models (e.g., the Gail and the Tyrer-Cuzick models). Image-based risk fa...

  2. Automatic segmentation of vertebral arteries in CT angiography using combined circular and cylindrical model fitting

    Science.gov (United States)

    Lee, Min Jin; Hong, Helen; Chung, Jin Wook

    2014-03-01

    We propose an automatic vessel segmentation method of vertebral arteries in CT angiography using combined circular and cylindrical model fitting. First, to generate multi-segmented volumes, whole volume is automatically divided into four segments by anatomical properties of bone structures along z-axis of head and neck. To define an optimal volume circumscribing vertebral arteries, anterior-posterior bounding and side boundaries are defined as initial extracted vessel region. Second, the initial vessel candidates are tracked using circular model fitting. Since boundaries of the vertebral arteries are ambiguous in case the arteries pass through the transverse foramen in the cervical vertebra, the circle model is extended along z-axis to cylinder model for considering additional vessel information of neighboring slices. Finally, the boundaries of the vertebral arteries are detected using graph-cut optimization. From the experiments, the proposed method provides accurate results without bone artifacts and eroded vessels in the cervical vertebra.

  3. 水平集分层分割遥感图像中的建筑物%Automatic building segmentation from remote sensing images using multi-layer level set framework

    Institute of Scientific and Technical Information of China (English)

    郭靖; 江洁; 曹世翔

    2014-01-01

    Towards high resolution remote sensing images, combining with features of buildings, a novel method to extract buildings based on multi-layer level set framework was proposed. Firstly, as far as the impact of shadow and vegetation was concerned, it should be removed on the basis of the separation of gray value thresh and the joint distribution of hue and saturation. Then, an improved C-V level set segmentation algorithm combining with building features of roof′s gray and obvious boundaries was applied to extract building regions of similar gray-scales on each gray layer, and thus all building regions of different gray-scales could be extracted layer by layer, followed by layers of segmented regions integration. Finally, the non-building regions were excluded by using normal areas of buildings and related position between buildings and shadows. The experiment results demonstrate that, compared with the traditional level set methods, this one can detect each single building of gray heterogeneity and buildings of multiple shapes and different gray-scales. Meanwhile, compared to the traditional C-V method, it largely reduces the leakage segmentation ratio by 25% and over-segmentation by 22%.%针对高分辨率遥感图像,结合建筑物特征,提出水平集分层模型分割图像中的建筑物。首先,学习植被样本得到其在HSV空间中色调与饱和度的联合分布函数,利用阴影灰度方差通常小于非阴影区域的特点,将植被和阴影剔除以简化背景利于后续分割。然后,根据灰度级高低将一幅图像看作多层图像层,把建筑物的屋顶灰度特征和边缘特征融合到传统Chan-Vese(C-V)水平集算法中,分割出每层中灰度级相似的建筑物候选区域,从而将不同灰度级建筑物候选区域分层分割出来再整合。最后利用建筑物面积、建筑物与阴影位置关系等先验知识排除误分割,得到最终结果。实验表明:该方法能更好地分割

  4. Nonlinear image labeling for multivalued segmentation.

    Science.gov (United States)

    Dellepiane, S G; Fontana, F; Vernazza, G L

    1996-01-01

    We describe a framework for multivalued segmentation and demonstrate that some of the problems affecting common region-based algorithms can be overcome by integrating statistical and topological methods in a nonlinear fashion. We address the sensitivity to parameter setting, the difficulty with handling global contextual information, and the dependence of results on analysis order and on initial conditions. We develop our method within a theoretical framework and resort to the definition of image segmentation as an estimation problem. We show that, thanks to an adaptive image scanning mechanism, there is no need of iterations to propagate a global context efficiently. The keyword multivalued refers to a result property, which spans over a set of solutions. The advantage is twofold: first, there is no necessity for setting a priori input thresholds; secondly, we are able to cope successfully with the problem of uncertainties in the signal model. To this end, we adopt a modified version of fuzzy connectedness, which proves particularly useful to account for densitometric and topological information simultaneously. The algorithm was tested on several synthetic and real images. The peculiarities of the method are assessed both qualitatively and quantitatively. PMID:18285129

  5. Segmentation of tongue muscles from super-resolution magnetic resonance images.

    Science.gov (United States)

    Ibragimov, Bulat; Prince, Jerry L; Murano, Emi Z; Woo, Jonghye; Stone, Maureen; Likar, Boštjan; Pernuš, Franjo; Vrtovec, Tomaž

    2015-02-01

    Imaging and quantification of tongue anatomy is helpful in surgical planning, post-operative rehabilitation of tongue cancer patients, and studying of how humans adapt and learn new strategies for breathing, swallowing and speaking to compensate for changes in function caused by disease, medical interventions or aging. In vivo acquisition of high-resolution three-dimensional (3D) magnetic resonance (MR) images with clearly visible tongue muscles is currently not feasible because of breathing and involuntary swallowing motions that occur over lengthy imaging times. However, recent advances in image reconstruction now allow the generation of super-resolution 3D MR images from sets of orthogonal images, acquired at a high in-plane resolution and combined using super-resolution techniques. This paper presents, to the best of our knowledge, the first attempt towards automatic tongue muscle segmentation from MR images. We devised a database of ten super-resolution 3D MR images, in which the genioglossus and inferior longitudinalis tongue muscles were manually segmented and annotated with landmarks. We demonstrate the feasibility of segmenting the muscles of interest automatically by applying the landmark-based game-theoretic framework (GTF), where a landmark detector based on Haar-like features and an optimal assignment-based shape representation were integrated. The obtained segmentation results were validated against an independent manual segmentation performed by a second observer, as well as against B-splines and demons atlasing approaches. The segmentation performance resulted in mean Dice coefficients of 85.3%, 81.8%, 78.8% and 75.8% for the second observer, GTF, B-splines atlasing and demons atlasing, respectively. The obtained level of segmentation accuracy indicates that computerized tongue muscle segmentation may be used in surgical planning and treatment outcome analysis of tongue cancer patients, and in studies of normal subjects and subjects with speech and

  6. 3D automatic anatomy segmentation based on iterative graph-cut-ASM

    International Nuclear Information System (INIS)

    Purpose: This paper studies the feasibility of developing an automatic anatomy segmentation (AAS) system in clinical radiology and demonstrates its operation on clinical 3D images. Methods: The AAS system, the authors are developing consists of two main parts: object recognition and object delineation. As for recognition, a hierarchical 3D scale-based multiobject method is used for the multiobject recognition task, which incorporates intensity weighted ball-scale (b-scale) information into the active shape model (ASM). For object delineation, an iterative graph-cut-ASM (IGCASM) algorithm is proposed, which effectively combines the rich statistical shape information embodied in ASM with the globally optimal delineation capability of the GC method. The presented IGCASM algorithm is a 3D generalization of the 2D GC-ASM method that they proposed previously in Chen et al.[Proc. SPIE, 7259, 72590C1-72590C-8 (2009)]. The proposed methods are tested on two datasets comprised of images obtained from 20 patients (10 male and 10 female) of clinical abdominal CT scans, and 11 foot magnetic resonance imaging (MRI) scans. The test is for four organs (liver, left and right kidneys, and spleen) segmentation, five foot bones (calcaneus, tibia, cuboid, talus, and navicular). The recognition and delineation accuracies were evaluated separately. The recognition accuracy was evaluated in terms of translation, rotation, and scale (size) error. The delineation accuracy was evaluated in terms of true and false positive volume fractions (TPVF, FPVF). The efficiency of the delineation method was also evaluated on an Intel Pentium IV PC with a 3.4 GHZ CPU machine. Results: The recognition accuracies in terms of translation, rotation, and scale error over all organs are about 8 mm, 10 deg. and 0.03, and over all foot bones are about 3.5709 mm, 0.35 deg. and 0.025, respectively. The accuracy of delineation over all organs for all subjects as expressed in TPVF and FPVF is 93.01% and 0.22%, and

  7. 3D automatic anatomy segmentation based on iterative graph-cut-ASM

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Xinjian; Bagci, Ulas [Radiology and Imaging Sciences, Clinical Center, National Institutes of Health, Building 10 Room 1C515, Bethesda, Maryland 20892-1182 and Life Sciences Research Center, School of Life Sciences and Technology, Xidian University, Xi' an 710071 (China); Radiology and Imaging Sciences, Clinical Center, National Institutes of Health, Building 10 Room 1C515, Bethesda, Maryland 20892-1182 (United States)

    2011-08-15

    Purpose: This paper studies the feasibility of developing an automatic anatomy segmentation (AAS) system in clinical radiology and demonstrates its operation on clinical 3D images. Methods: The AAS system, the authors are developing consists of two main parts: object recognition and object delineation. As for recognition, a hierarchical 3D scale-based multiobject method is used for the multiobject recognition task, which incorporates intensity weighted ball-scale (b-scale) information into the active shape model (ASM). For object delineation, an iterative graph-cut-ASM (IGCASM) algorithm is proposed, which effectively combines the rich statistical shape information embodied in ASM with the globally optimal delineation capability of the GC method. The presented IGCASM algorithm is a 3D generalization of the 2D GC-ASM method that they proposed previously in Chen et al.[Proc. SPIE, 7259, 72590C1-72590C-8 (2009)]. The proposed methods are tested on two datasets comprised of images obtained from 20 patients (10 male and 10 female) of clinical abdominal CT scans, and 11 foot magnetic resonance imaging (MRI) scans. The test is for four organs (liver, left and right kidneys, and spleen) segmentation, five foot bones (calcaneus, tibia, cuboid, talus, and navicular). The recognition and delineation accuracies were evaluated separately. The recognition accuracy was evaluated in terms of translation, rotation, and scale (size) error. The delineation accuracy was evaluated in terms of true and false positive volume fractions (TPVF, FPVF). The efficiency of the delineation method was also evaluated on an Intel Pentium IV PC with a 3.4 GHZ CPU machine. Results: The recognition accuracies in terms of translation, rotation, and scale error over all organs are about 8 mm, 10 deg. and 0.03, and over all foot bones are about 3.5709 mm, 0.35 deg. and 0.025, respectively. The accuracy of delineation over all organs for all subjects as expressed in TPVF and FPVF is 93.01% and 0.22%, and

  8. A New Method for Segmentation of Multiple Sclerosis (MS Lesions on Brain MR Images

    Directory of Open Access Journals (Sweden)

    Simin Jafari

    2015-07-01

    Full Text Available Automatic segmentation of multiple sclerosis (MS lesions in brain MRI has been widely investigated in recent years with the goal of helping MS diagnosis and patient follow-up. In this study we applied gaussian mixture model (GMM to segment MS lesions in MR images. Usually, GMM is optimized using expectation-maximization (EM algorithm. One of the drawbacks of this optimization method is that, it does not convergence to optimal maximum or minimum. Starting from different initial points and saving best result, is a strategy which is used to reach the near optimal. This approach is time consuming and we used another way to initiate the EM algorithm. Also, FAST- Trimmed Likelihood Estimator (FAST-TLE algorithm was applied to determine which voxels should be rejected. The automatically segmentation outputs were scored by two specialists and the results show that our method has capability to segment the MS lesions with Dice similarity coefficient (DSC score of 0.82.

  9. A Semantic Connected Coherence Scheme for Efficient Image Segmentation

    Directory of Open Access Journals (Sweden)

    S.Pannirselvam

    2012-06-01

    Full Text Available Image processing is a comprehensively research topic with an elongated history. Segmenting an image is the most challenging and difficult task in image processing and analysis. The principal intricacy met in image segmentation is the ability of techniques to discover semantic objects efficiently from an image without any prior knowledge. One recent work presented connected coherence tree algorithm (CCTA for image segmentation (with no prior knowledge which discovered regions of semantic coherence based on neighbor coherence segmentation criteria. It deployed an adaptive spatial scale and a suitable intensity-difference scale to extract several sets of coherent neighboring pixels and maximize the probability of single image content and minimize complex backgrounds. However CCTA segmented images either consists of small, lengthy and slender objects or rigorously ruined by noise, irregular lighting, occlusion, poor illumination, and shadow.In this paper, we present a Cluster based Semantic Coherent Tree (CBSCT scheme for image segmentation. CBSCT’s initial work is on the semantic connected coherence criteria for the image segregation. Semantic coherent regions are clustered based on Bayesian nearest neighbor search of neighborhood pixels. The segmentation regions are extracted from the images based on the cluster object purity obtained through semantic coherent regions. The clustered image regions are post processed with non linear noise filters. Performance metrics used in the evaluation of CBSCT are semantic coherent pixel size, number of cluster objects, and purity levels of the cluster, segmented coherent region intensity threshold, and quality of segmented images in terms of image clarity with PSNR.

  10. Intensity-based segmentation of microarray images.

    Science.gov (United States)

    Nagarajan, Radhakrishnan

    2003-07-01

    The underlying principle in microarray image analysis is that the spot intensity is a measure of the gene expression. This implicitly assumes the gene expression of a spot to be governed entirely by the distribution of the pixel intensities. Thus, a segmentation technique based on the distribution of the pixel intensities is appropriate for the current problem. In this paper, clustering-based segmentation is described to extract the target intensity of the spots. The approximate boundaries of the spots in the microarray are determined by manual adjustment of rectilinear grids. The distribution of the pixel intensity in a grid containing a spot is assumed to be the superposition of the foreground and the local background. The k-means clustering technique and the partitioning around medoids (PAM) were used to generate a binary partition of the pixel intensity distribution. The median (k-means) and the medoid (PAM) of the cluster members are chosen as the cluster representatives. The effectiveness of the clustering-based segmentation techniques was tested on publicly available arrays generated in a lipid metabolism experiment (Callow et al., 2000). The results are compared against those obtained using the region-growing approach (SPOT) (Yang et al., 2001). The effect of additive white Gaussian noise is also investigated. PMID:12906242

  11. Statistical shape model-based segmentation of brain MRI images.

    Science.gov (United States)

    Bailleul, Jonathan; Ruan, Su; Constans, Jean-Marc

    2007-01-01

    We propose a segmentation method that automatically delineates structures contours from 3D brain MRI images using a statistical shape model. We automatically build this 3D Point Distribution Model (PDM) in applying a Minimum Description Length (MDL) annotation to a training set of shapes, obtained by registration of a 3D anatomical atlas over a set of patients brain MRIs. Delineation of any structure from a new MRI image is first initialized by such registration. Then, delineation is achieved in iterating two consecutive steps until the 3D contour reaches idempotence. The first step consists in applying an intensity model to the latest shape position so as to formulate a closer guess: our model requires far less priors than standard model in aiming at direct interpretation rather than compliance to learned contexts. The second step consists in enforcing shape constraints onto previous guess so as to remove all bias induced by artifacts or low contrast on current MRI. For this, we infer the closest shape instance from the PDM shape space using a new estimation method which accuracy is significantly improved by a huge increase in the model resolution and by a depth-search in the parameter space. The delineation results we obtained are very encouraging and show the interest of the proposed framework. PMID:18003193

  12. Automatic determination of the artery vein ratio in retinal images

    Science.gov (United States)

    Niemeijer, Meindert; van Ginneken, Bram; Abràmoff, Michael D.

    2010-03-01

    A lower ratio between the width of the arteries and veins (Arteriolar-to-Venular diameter Ratio, AVR) on the retina, is well established to be predictive of stroke and other cardiovascular events in adults, as well as an increased risk of retinopathy of prematurity in premature infants. This work presents an automatic method that detects the location of the optic disc, determines the appropriate region of interest (ROI), classifies the vessels in the ROI into arteries and veins, measures their widths and calculates the AVR. After vessel segmentation and vessel width determination the optic disc is located and the system eliminates all vessels outside the AVR measurement ROI. The remaining vessels are thinned, vessel crossing and bifurcation points are removed leaving a set of vessel segments containing centerline pixels. Features are extracted from each centerline pixel that are used to assign them a soft label indicating the likelihood the pixel is part of a vein. As all centerline pixels in a connected segment should be the same type, the median soft label is assigned to each centerline pixel in the segment. Next artery vein pairs are matched using an iterative algorithm and the widths of the vessels is used to calculate the AVR. We train and test the algorithm using a set of 25 high resolution digital color fundus photographs a reference standard that indicates for the major vessels in the images whether they are an artery or a vein. We compared the AVR values produced by our system with those determined using a computer assisted method in 15 high resolution digital color fundus photographs and obtained a correlation coefficient of 0.881.

  13. a Minimum Spanning Tree Based Method for Uav Image Segmentation

    Science.gov (United States)

    Wang, Ping; Wei, Zheng; Cui, Weihong; Lin, Zhiyong

    2016-06-01

    This paper proposes a Minimum Span Tree (MST) based image segmentation method for UAV images in coastal area. An edge weight based optimal criterion (merging predicate) is defined, which based on statistical learning theory (SLT). And we used a scale control parameter to control the segmentation scale. Experiments based on the high resolution UAV images in coastal area show that the proposed merging predicate can keep the integrity of the objects and prevent results from over segmentation. The segmentation results proves its efficiency in segmenting the rich texture images with good boundary of objects.

  14. RBCs and Parasites Segmentation from Thin Smear Blood Cell Images

    Directory of Open Access Journals (Sweden)

    Vishal V. Panchbhai

    2012-09-01

    Full Text Available Manually examine the blood smear for the detection of malaria parasite consumes lot of time for trend pathologists. As the computational power increases, the role of automatic visual inspection becomes more important. An automated system is therefore needed to complete as much work as possible for the identification of malaria parasites. The given scheme based on used of RGB color space, G layer processing, and segmentation of Red Blood Cells (RBC as well as cell parasites by auto-thresholding with offset value and use of morphological processing. The work compare with the manual results obtained from the pathology lab, based on total RBC count and cells parasite count. The designed system successfully detects malaria parasites and RBC cells in thin smear image.

  15. Hierarchical Non-linear Image Registration Integrating Deformable Segmentation

    Institute of Scientific and Technical Information of China (English)

    RAN Xin; QI Fei-hu

    2005-01-01

    A hierarchical non-linear method for image registration was presented, which integrates image segmentation and registration under a variational framework. An improved deformable model is used to simultaneously segment and register feature from multiple images. The objects in the image pair are segmented by evolving a single contour and meanwhile the parameters of affine registration transformation are found out. After that, a contour-constrained elastic registration is applied to register the images correctly. The experimental results indicate that the proposed approach is effective to segment and register medical images.

  16. Saliency-aware food image segmentation for personal dietary assessment using a wearable computer

    International Nuclear Information System (INIS)

    Image-based dietary assessment has recently received much attention in the community of obesity research. In this assessment, foods in digital pictures are specified, and their portion sizes (volumes) are estimated. Although manual processing is currently the most utilized method, image processing holds much promise since it may eventually lead to automatic dietary assessment. In this paper we study the problem of segmenting food objects from images. This segmentation is difficult because of various food types, shapes and colors, different decorating patterns on food containers, and occlusions of food and non-food objects. We propose a novel method based on a saliency-aware active contour model (ACM) for automatic food segmentation from images acquired by a wearable camera. An integrated saliency estimation approach based on food location priors and visual attention features is designed to produce a salient map of possible food regions in the input image. Next, a geometric contour primitive is generated and fitted to the salient map by means of multi-resolution optimization with respect to a set of affine and elastic transformation parameters. The food regions are then extracted after contour fitting. Our experiments using 60 food images showed that the proposed method achieved significantly higher accuracy in food segmentation when compared to conventional segmentation methods. (paper)

  17. Saliency-aware food image segmentation for personal dietary assessment using a wearable computer

    Science.gov (United States)

    Chen, Hsin-Chen; Jia, Wenyan; Sun, Xin; Li, Zhaoxin; Li, Yuecheng; Fernstrom, John D.; Burke, Lora E.; Baranowski, Thomas; Sun, Mingui

    2015-02-01

    Image-based dietary assessment has recently received much attention in the community of obesity research. In this assessment, foods in digital pictures are specified, and their portion sizes (volumes) are estimated. Although manual processing is currently the most utilized method, image processing holds much promise since it may eventually lead to automatic dietary assessment. In this paper we study the problem of segmenting food objects from images. This segmentation is difficult because of various food types, shapes and colors, different decorating patterns on food containers, and occlusions of food and non-food objects. We propose a novel method based on a saliency-aware active contour model (ACM) for automatic food segmentation from images acquired by a wearable camera. An integrated saliency estimation approach based on food location priors and visual attention features is designed to produce a salient map of possible food regions in the input image. Next, a geometric contour primitive is generated and fitted to the salient map by means of multi-resolution optimization with respect to a set of affine and elastic transformation parameters. The food regions are then extracted after contour fitting. Our experiments using 60 food images showed that the proposed method achieved significantly higher accuracy in food segmentation when compared to conventional segmentation methods.

  18. Automatic segmentation and co-registration of gated CT angiography datasets: measuring abdominal aortic pulsatility

    Science.gov (United States)

    Wentz, Robert; Manduca, Armando; Fletcher, J. G.; Siddiki, Hassan; Shields, Raymond C.; Vrtiska, Terri; Spencer, Garrett; Primak, Andrew N.; Zhang, Jie; Nielson, Theresa; McCollough, Cynthia; Yu, Lifeng

    2007-03-01

    Purpose: To develop robust, novel segmentation and co-registration software to analyze temporally overlapping CT angiography datasets, with an aim to permit automated measurement of regional aortic pulsatility in patients with abdominal aortic aneurysms. Methods: We perform retrospective gated CT angiography in patients with abdominal aortic aneurysms. Multiple, temporally overlapping, time-resolved CT angiography datasets are reconstructed over the cardiac cycle, with aortic segmentation performed using a priori anatomic assumptions for the aorta and heart. Visual quality assessment is performed following automatic segmentation with manual editing. Following subsequent centerline generation, centerlines are cross-registered across phases, with internal validation of co-registration performed by examining registration at the regions of greatest diameter change (i.e. when the second derivative is maximal). Results: We have performed gated CT angiography in 60 patients. Automatic seed placement is successful in 79% of datasets, requiring either no editing (70%) or minimal editing (less than 1 minute; 12%). Causes of error include segmentation into adjacent, high-attenuating, nonvascular tissues; small segmentation errors associated with calcified plaque; and segmentation of non-renal, small paralumbar arteries. Internal validation of cross-registration demonstrates appropriate registration in our patient population. In general, we observed that aortic pulsatility can vary along the course of the abdominal aorta. Pulsation can also vary within an aneurysm as well as between aneurysms, but the clinical significance of these findings remain unknown. Conclusions: Visualization of large vessel pulsatility is possible using ECG-gated CT angiography, partial scan reconstruction, automatic segmentation, centerline generation, and coregistration of temporally resolved datasets.

  19. Segmentation of radiographic images under topological constraints: application to the femur

    Energy Technology Data Exchange (ETDEWEB)

    Gamage, Pavan; Xie, Sheng Quan [University of Auckland, Department of Mechanical Engineering (Mechatronics), Auckland (New Zealand); Delmas, Patrice [University of Auckland, Department of Computer Science, Auckland (New Zealand); Xu, Wei Liang [Massey University, School of Engineering and Advanced Technology, Auckland (New Zealand)

    2010-09-15

    A framework for radiographic image segmentation under topological control based on two-dimensional (2D) image analysis was developed. The system is intended for use in common radiological tasks including fracture treatment analysis, osteoarthritis diagnostics and osteotomy management planning. The segmentation framework utilizes a generic three-dimensional (3D) model of the bone of interest to define the anatomical topology. Non-rigid registration is performed between the projected contours of the generic 3D model and extracted edges of the X-ray image to achieve the segmentation. For fractured bones, the segmentation requires an additional step where a region-based active contours curve evolution is performed with a level set Mumford-Shah method to obtain the fracture surface edge. The application of the segmentation framework to analysis of human femur radiographs was evaluated. The proposed system has two major innovations. First, definition of the topological constraints does not require a statistical learning process, so the method is generally applicable to a variety of bony anatomy segmentation problems. Second, the methodology is able to handle both intact and fractured bone segmentation. Testing on clinical X-ray images yielded an average root mean squared distance (between the automatically segmented femur contour and the manual segmented ground truth) of 1.10 mm with a standard deviation of 0.13 mm. The proposed point correspondence estimation algorithm was benchmarked against three state-of-the-art point matching algorithms, demonstrating successful non-rigid registration for the cases of interest. A topologically constrained automatic bone contour segmentation framework was developed and tested, providing robustness to noise, outliers, deformations and occlusions. (orig.)

  20. Segmentation as a part of the intelligent medical image processing

    OpenAIRE

    Добріна, Ольга Олексіївна

    2012-01-01

    Segmentation is one of the key tools in medical image analysis that allows an accurate recognizing and delineating individual objects (e.g. organs) on the whole image quickly and effectively. In general, segmentation technics can be divided into two main groups: methods of explicitly specifying the desired feature and algorithms where the specification is implicit. Automated segmentation of medical images is a difficult task, because the images are often noisy and contain more than a single ...

  1. Automatic page composition with combined image crop and layout metrics

    Science.gov (United States)

    Hunter, Andrew; Greig, Darryl

    2012-03-01

    Automatic layout algorithms simplify the composition of image-rich documents, but they still require users to have sufficient artistry to supply well cropped and composed imagery. Combining an automatic cropping technology with a document layout system enables better results to be produced faster by less-skilled users. This paper reviews prior work in automatic image cropping and automatic page layout and presents a case for a combined crop and layout technology. We describe one such technology in a system for interactive publication design by amateur self-publishers and show that providing an automatic cropping system with additional information about the layout context can enable it to generate a more appropriate set of ranked crop options for a given image. Furthermore, we show that providing an automatic layout system with sets of ranked crop options for images can enable it to compose more appropriate page layouts.

  2. Semiautomatic tumor segmentation with multimodal images in a conditional random field framework.

    Science.gov (United States)

    Hu, Yu-Chi; Grossberg, Michael; Mageras, Gikas

    2016-04-01

    Volumetric medical images of a single subject can be acquired using different imaging modalities, such as computed tomography, magnetic resonance imaging (MRI), and positron emission tomography. In this work, we present a semiautomatic segmentation algorithm that can leverage the synergies between different image modalities while integrating interactive human guidance. The algorithm provides a statistical segmentation framework partly automating the segmentation task while still maintaining critical human oversight. The statistical models presented are trained interactively using simple brush strokes to indicate tumor and nontumor tissues and using intermediate results within a patient's image study. To accomplish the segmentation, we construct the energy function in the conditional random field (CRF) framework. For each slice, the energy function is set using the estimated probabilities from both user brush stroke data and prior approved segmented slices within a patient study. The progressive segmentation is obtained using a graph-cut-based minimization. Although no similar semiautomated algorithm is currently available, we evaluated our method with an MRI data set from Medical Image Computing and Computer Assisted Intervention Society multimodal brain segmentation challenge (BRATS 2012 and 2013) against a similar fully automatic method based on CRF and a semiautomatic method based on grow-cut, and our method shows superior performance. PMID:27413768

  3. MARKET SEGMENTATION USING COLOR INFORMATION OF IMAGES

    Directory of Open Access Journals (Sweden)

    Ines Daniel

    2015-06-01

    Full Text Available Market segmentation is an important area of marketing. In this field, researchers use clustering algorithms to divide customers into homogeneous groups. Traditionally, these groups are formed on the basis of survey data. In these surveys, the test persons often have to answer a variety of questions. With the increasing amount of digitalization and improved technical capabilities, new databases are now available for this purpose. For example, potential customers might provide photos that describe their activities, interests, or opinions. In the area of content-based image retrieval (CBIR there are various methods that currently exist to analyze the similarity of such photos, e.g., using distributional descriptors of colors, textures, or shapes. In this paper we discuss which dissimilarity measures could be used to segment photos by hierarchical clustering on the basis of color. For this purpose we analyzed 2,100 images concerning three color spaces RGB, HSV and CIE L*a*b* using different distance measures as the basis for hierarchical clustering.

  4. Variation-based approach to image segmentation Variation-based approach to image segmentation

    Institute of Scientific and Technical Information of China (English)

    张永平; 郑南宁; 赵荣椿

    2001-01-01

    A new approach to image segmentation is presented using a variation framework. Regarding the edge points as interpolating points and minimizing an energy functional to interpolate a smooth threshold surface it carries out the image segmentation. In order to preserve the edge information of the original image in the threshold surface, without unduly sharping the edge of the image, a non-convex energy functional is adopted. A relaxation algorithm with the property of global convergence, for solving the optimization problem, is proposed by introducing a binary energy. As a result the non-convex optimization problem is transformed into a series of convex optimization problems, and the problem of slow convergence or nonconvergence is solved. The presented method is also tested experimentally. Finally the method of determining the parameters in optimizing is also explored.   

  5. Fusion of Image Segmentation Algorithms using Consensus Clustering

    OpenAIRE

    Ozay, Mete; Vural, Fatos T. Yarman; Kulkarni, Sanjeev R.; Poor, H. Vincent

    2015-01-01

    A new segmentation fusion method is proposed that ensembles the output of several segmentation algorithms applied on a remotely sensed image. The candidate segmentation sets are processed to achieve a consensus segmentation using a stochastic optimization algorithm based on the Filtered Stochastic BOEM (Best One Element Move) method. For this purpose, Filtered Stochastic BOEM is reformulated as a segmentation fusion problem by designing a new distance learning approach. The proposed algorithm...

  6. Region-based multi-step optic disk and cup segmentation from color fundus image

    Science.gov (United States)

    Xiao, Di; Lock, Jane; Manresa, Javier Moreno; Vignarajan, Janardhan; Tay-Kearney, Mei-Ling; Kanagasingam, Yogesan

    2013-02-01

    Retinal optic cup-disk-ratio (CDR) is a one of important indicators of glaucomatous neuropathy. In this paper, we propose a novel multi-step 4-quadrant thresholding method for optic disk segmentation and a multi-step temporal-nasal segmenting method for optic cup segmentation based on blood vessel inpainted HSL lightness images and green images. The performance of the proposed methods was evaluated on a group of color fundus images and compared with the manual outlining results from two experts. Dice scores of detected disk and cup regions between the auto and manual results were computed and compared. Vertical CDRs were also compared among the three results. The preliminary experiment has demonstrated the robustness of the method for automatic optic disk and cup segmentation and its potential value for clinical application.

  7. Random Walk Based Segmentation for the Prostate on 3D Transrectal Ultrasound Images

    Science.gov (United States)

    Ma, Ling; Guo, Rongrong; Tian, Zhiqiang; Venkataraman, Rajesh; Sarkar, Saradwata; Liu, Xiabi; Nieh, Peter T.; Master, Viraj V.; Schuster, David M.; Fei, Baowei

    2016-01-01

    This paper proposes a new semi-automatic segmentation method for the prostate on 3D transrectal ultrasound images (TRUS) by combining the region and classification information. We use a random walk algorithm to express the region information efficiently and flexibly because it can avoid segmentation leakage and shrinking bias. We further use the decision tree as the classifier to distinguish the prostate from the non-prostate tissue because of its fast speed and superior performance, especially for a binary classification problem. Our segmentation algorithm is initialized with the user roughly marking the prostate and non-prostate points on the mid-gland slice which are fitted into an ellipse for obtaining more points. Based on these fitted seed points, we run the random walk algorithm to segment the prostate on the mid-gland slice. The segmented contour and the information from the decision tree classification are combined to determine the initial seed points for the other slices. The random walk algorithm is then used to segment the prostate on the adjacent slice. We propagate the process until all slices are segmented. The segmentation method was tested in 32 3D transrectal ultrasound images. Manual segmentation by a radiologist serves as the gold standard for the validation. The experimental results show that the proposed method achieved a Dice similarity coefficient of 91.37±0.05%. The segmentation method can be applied to 3D ultrasound-guided prostate biopsy and other applications.

  8. Automatic Segmentation of Heart Sounds (S1 & S2 Using Wavelet

    Directory of Open Access Journals (Sweden)

    MohammadAli Saghafi

    2009-03-01

    Full Text Available In this paper a new method approach is proposed for automatic segmentation of heart sounds (S1, S2 based on wavelet transform. Unlike many other approaches, this method does not use ECG as reference for detection. The applied criterion for segmentation is based on a very important physiologic attribute of heart which is the difference between the pressure of heart valves while opening and closing which causes high frequency components in heart sound. The main idea in this paper is to extract detail and approximation wavelet coefficients of heart sound (PCG to detect the heart cycle via the Shannon energy of coefficients and then segment S1 and S2. The results show the present algorithm is capable of accurate segmentation of 90% of first heart sounds (S1 and 88.9% of second heart sounds (S2.

  9. Tomographic brain imaging with nucleolar detail and automatic cell counting

    Science.gov (United States)

    Hieber, Simone E.; Bikis, Christos; Khimchenko, Anna; Schweighauser, Gabriel; Hench, Jürgen; Chicherova, Natalia; Schulz, Georg; Müller, Bert

    2016-09-01

    Brain tissue evaluation is essential for gaining in-depth insight into its diseases and disorders. Imaging the human brain in three dimensions has always been a challenge on the cell level. In vivo methods lack spatial resolution, and optical microscopy has a limited penetration depth. Herein, we show that hard X-ray phase tomography can visualise a volume of up to 43 mm3 of human post mortem or biopsy brain samples, by demonstrating the method on the cerebellum. We automatically identified 5,000 Purkinje cells with an error of less than 5% at their layer and determined the local surface density to 165 cells per mm2 on average. Moreover, we highlight that three-dimensional data allows for the segmentation of sub-cellular structures, including dendritic tree and Purkinje cell nucleoli, without dedicated staining. The method suggests that automatic cell feature quantification of human tissues is feasible in phase tomograms obtained with isotropic resolution in a label-free manner.

  10. Tomographic brain imaging with nucleolar detail and automatic cell counting.

    Science.gov (United States)

    Hieber, Simone E; Bikis, Christos; Khimchenko, Anna; Schweighauser, Gabriel; Hench, Jürgen; Chicherova, Natalia; Schulz, Georg; Müller, Bert

    2016-01-01

    Brain tissue evaluation is essential for gaining in-depth insight into its diseases and disorders. Imaging the human brain in three dimensions has always been a challenge on the cell level. In vivo methods lack spatial resolution, and optical microscopy has a limited penetration depth. Herein, we show that hard X-ray phase tomography can visualise a volume of up to 43 mm(3) of human post mortem or biopsy brain samples, by demonstrating the method on the cerebellum. We automatically identified 5,000 Purkinje cells with an error of less than 5% at their layer and determined the local surface density to 165 cells per mm(2) on average. Moreover, we highlight that three-dimensional data allows for the segmentation of sub-cellular structures, including dendritic tree and Purkinje cell nucleoli, without dedicated staining. The method suggests that automatic cell feature quantification of human tissues is feasible in phase tomograms obtained with isotropic resolution in a label-free manner. PMID:27581254

  11. An Efficient Approach for Tree Digital Image Segmentation

    Institute of Scientific and Technical Information of China (English)

    Cheng Lei; Song Tieying

    2004-01-01

    This paper proposes an improved method to segment tree image based on color and texture feature and amends the segmented result by mathematical morphology. The crown and trunk of one tree have been successfully segmented and the experimental result is deemed effective. The authors conclude that building a standard data base for a range of species, featuring color and texture is a necessary condition and constitutes the essential groundwork for tree image segmentation in order to insure its quality.

  12. Automated ventricular systems segmentation in brain CT images by combining low-level segmentation and high-level template matching

    Directory of Open Access Journals (Sweden)

    Ward Kevin R

    2009-11-01

    Full Text Available Abstract Background Accurate analysis of CT brain scans is vital for diagnosis and treatment of Traumatic Brain Injuries (TBI. Automatic processing of these CT brain scans could speed up the decision making process, lower the cost of healthcare, and reduce the chance of human error. In this paper, we focus on automatic processing of CT brain images to segment and identify the ventricular systems. The segmentation of ventricles provides quantitative measures on the changes of ventricles in the brain that form vital diagnosis information. Methods First all CT slices are aligned by detecting the ideal midlines in all images. The initial estimation of the ideal midline of the brain is found based on skull symmetry and then the initial estimate is further refined using detected anatomical features. Then a two-step method is used for ventricle segmentation. First a low-level segmentation on each pixel is applied on the CT images. For this step, both Iterated Conditional Mode (ICM and Maximum A Posteriori Spatial Probability (MASP are evaluated and compared. The second step applies template matching algorithm to identify objects in the initial low-level segmentation as ventricles. Experiments for ventricle segmentation are conducted using a relatively large CT dataset containing mild and severe TBI cases. Results Experiments show that the acceptable rate of the ideal midline detection is over 95%. Two measurements are defined to evaluate ventricle recognition results. The first measure is a sensitivity-like measure and the second is a false positive-like measure. For the first measurement, the rate is 100% indicating that all ventricles are identified in all slices. The false positives-like measurement is 8.59%. We also point out the similarities and differences between ICM and MASP algorithms through both mathematically relationships and segmentation results on CT images. Conclusion The experiments show the reliability of the proposed algorithms. The

  13. An Improved FCM Medical Image Segmentation Algorithm Based on MMTD

    Directory of Open Access Journals (Sweden)

    Ningning Zhou

    2014-01-01

    Full Text Available Image segmentation plays an important role in medical image processing. Fuzzy c-means (FCM is one of the popular clustering algorithms for medical image segmentation. But FCM is highly vulnerable to noise due to not considering the spatial information in image segmentation. This paper introduces medium mathematics system which is employed to process fuzzy information for image segmentation. It establishes the medium similarity measure based on the measure of medium truth degree (MMTD and uses the correlation of the pixel and its neighbors to define the medium membership function. An improved FCM medical image segmentation algorithm based on MMTD which takes some spatial features into account is proposed in this paper. The experimental results show that the proposed algorithm is more antinoise than the standard FCM, with more certainty and less fuzziness. This will lead to its practicable and effective applications in medical image segmentation.

  14. Automatic thalamus and hippocampus segmentation from MP2RAGE - comparison of publicly available methods and implications for DTI quantification

    DEFF Research Database (Denmark)

    Næss-Schmidt, Erhard; Tietze, Anna; Blicher, Jakob Udby;

    2016-01-01

    PURPOSE: In both structural and functional MRI, there is a need for accurate and reliable automatic segmentation of brain regions. Inconsistent segmentation reduces sensitivity and may bias results in clinical studies. The current study compares the performance of publicly available segmentation ...

  15. Bright-field cell image segmentation by principal component pursuit with an Ncut penalization

    Science.gov (United States)

    Chen, Yuehuan; Wan, Justin W. L.

    2015-03-01

    Segmentation of cells in time-lapse bright-field microscopic images is crucial in understanding cell behaviours for oncological research. However, the complex nature of the cells makes it difficult to segment cells accurately. Furthermore, poor contrast, broken cell boundaries and the halo artifact pose additional challenges to this problem. Standard segmentation techniques such as edged-based methods, watershed, or active contours result in poor segmentation. Other existing methods for bright-field images cannot provide good results without localized segmentation steps. In this paper, we present two robust mathematical models to segment bright-field cells automatically for the entire image. These models treat cell image segmentation as a background subtraction problem, which can be formulated as a Principal Component Pursuit (PCP) problem. Our first segmentation model is formulated as a PCP with nonnegative constraints. We exploit the sparse component of the PCP solution for identifying the cell pixels. However, there is no control on the quality of the sparse component and the nonzero entries can scatter all over the image, resulting in a noisy segmentation. The second model is an improvement of the first model by combining PCP with spectral clustering. Seemingly unrelated approaches, we combine the two techniques by incorporating normalized-cut in the PCP as a measure for the quality of the segmentation. These two models have been applied to a set of C2C12 cells obtained from bright-field microscopy. Experimental results demonstrate that the proposed models are effective in segmenting cells from bright-field images.

  16. Reliability and effectiveness of clickthrough data for automatic image annotation

    NARCIS (Netherlands)

    Tsikrika, T.; Diou, C.; Vries, A.P. de; Delopoulos, A.

    2010-01-01

    Automatic image annotation using supervised learning is performed by concept classifiers trained on labelled example images. This work proposes the use of clickthrough data collected from search logs as a source for the automatic generation of concept training data, thus avoiding the expensive manua

  17. Automatic image processing as a means of safeguarding nuclear material

    International Nuclear Information System (INIS)

    Problems involved in computerized analysis of pictures taken by automatic film or video cameras in the context of international safeguards implementation are described. They include technical ones as well as the need to establish objective criteria for assessing image information. In the near future automatic image processing systems will be useful in verifying the identity and integrity of IAEA seals. (author)

  18. Automatic Approach to Vhr Satellite Image Classification

    Science.gov (United States)

    Kupidura, P.; Osińska-Skotak, K.; Pluto-Kossakowska, J.

    2016-06-01

    In this paper, we present a proposition of a fully automatic classification of VHR satellite images. Unlike the most widespread approaches: supervised classification, which requires prior defining of class signatures, or unsupervised classification, which must be followed by an interpretation of its results, the proposed method requires no human intervention except for the setting of the initial parameters. The presented approach bases on both spectral and textural analysis of the image and consists of 3 steps. The first step, the analysis of spectral data, relies on NDVI values. Its purpose is to distinguish between basic classes, such as water, vegetation and non-vegetation, which all differ significantly spectrally, thus they can be easily extracted basing on spectral analysis. The second step relies on granulometric maps. These are the product of local granulometric analysis of an image and present information on the texture of each pixel neighbourhood, depending on the texture grain. The purpose of texture analysis is to distinguish between different classes, spectrally similar, but yet of different texture, e.g. bare soil from a built-up area, or low vegetation from a wooded area. Due to the use of granulometric analysis, based on mathematical morphology opening and closing, the results are resistant to the border effect (qualifying borders of objects in an image as spaces of high texture), which affect other methods of texture analysis like GLCM statistics or fractal analysis. Therefore, the effectiveness of the analysis is relatively high. Several indices based on values of different granulometric maps have been developed to simplify the extraction of classes of different texture. The third and final step of the process relies on a vegetation index, based on near infrared and blue bands. Its purpose is to correct partially misclassified pixels. All the indices used in the classification model developed relate to reflectance values, so the preliminary step

  19. AUTOMATIC APPROACH TO VHR SATELLITE IMAGE CLASSIFICATION

    Directory of Open Access Journals (Sweden)

    P. Kupidura

    2016-06-01

    Full Text Available In this paper, we present a proposition of a fully automatic classification of VHR satellite images. Unlike the most widespread approaches: supervised classification, which requires prior defining of class signatures, or unsupervised classification, which must be followed by an interpretation of its results, the proposed method requires no human intervention except for the setting of the initial parameters. The presented approach bases on both spectral and textural analysis of the image and consists of 3 steps. The first step, the analysis of spectral data, relies on NDVI values. Its purpose is to distinguish between basic classes, such as water, vegetation and non-vegetation, which all differ significantly spectrally, thus they can be easily extracted basing on spectral analysis. The second step relies on granulometric maps. These are the product of local granulometric analysis of an image and present information on the texture of each pixel neighbourhood, depending on the texture grain. The purpose of texture analysis is to distinguish between different classes, spectrally similar, but yet of different texture, e.g. bare soil from a built-up area, or low vegetation from a wooded area. Due to the use of granulometric analysis, based on mathematical morphology opening and closing, the results are resistant to the border effect (qualifying borders of objects in an image as spaces of high texture, which affect other methods of texture analysis like GLCM statistics or fractal analysis. Therefore, the effectiveness of the analysis is relatively high. Several indices based on values of different granulometric maps have been developed to simplify the extraction of classes of different texture. The third and final step of the process relies on a vegetation index, based on near infrared and blue bands. Its purpose is to correct partially misclassified pixels. All the indices used in the classification model developed relate to reflectance values, so the

  20. SAR IMAGE SEGMENTATION WITH UNKNOWN NUMBER OF CLASSES COMBINED VORONOI TESSELLATION AND RJMCMC ALGORITHM

    OpenAIRE

    Zhao, Q. H.; Li, Y.; Y Wang

    2016-01-01

    This paper presents a novel segmentation method for automatically determining the number of classes in Synthetic Aperture Radar (SAR) images by combining Voronoi tessellation and Reversible Jump Markov Chain Monte Carlo (RJMCMC) strategy. Instead of giving the number of classes a priori, it is considered as a random variable and subject to a Poisson distribution. Based on Voronoi tessellation, the image is divided into homogeneous polygons. By Bayesian paradigm, a posterior distribut...

  1. Using LSA and text segmentation to improve automatic Chinese dialogue text summarization

    Institute of Scientific and Technical Information of China (English)

    LIU Chuan-han; WANG Yong-cheng; ZHENG Fei; LIU De-rong

    2007-01-01

    Automatic Chinese text summarization for dialogue style is a relatively new research area. In this paper, Latent Semantic Analysis (LSA) is first used to extract semantic knowledge from a given document, all question paragraphs are identified,an automatic text segmentation approach analogous to TextTiling is exploited to improve the precision of correlating question paragraphs and answer paragraphs, and finally some "important" sentences are extracted from the generic content and the question-answer pairs to generate a complete summary. Experimental results showed that our approach is highly efficient and improves significantly the coherence of the summary while not compromising informativeness.

  2. Segmentation and registration duality from echographic images by use of physiological and morphological knowledge

    International Nuclear Information System (INIS)

    Echographic imaging could potentially play a major role in the field of Computer Assisted Surgery (CAS). For doctors and surgeons to make full use of tool in planning and executing surgical operations, they also need user-friendly automatic software based on fast, precise and reliable algorithms. The main goal of this thesis is to take advantage of the segmentation/registration duality to extract the relevant information from echo graphical images. This information will allow the precise and automatic registration both of anatomical structures contained in the pre-operative model and of per-operative data contained in echographic images. The result of registration will be further to guide a computer-assisted tool. In the first part we propose different methods for filtering, segmentation and calibration of echographic images. The development of fast, precise and reliable algorithms is emphasized. The second part concerns the segmentation-registration duality and the corrections of elastic deformations of soft tissues. High-level segmentation algorithms for echographic images were developed. They are based on results of low -level segmentation, a priori anatomical knowledge as well as on information provided by the pre-operative model. The third part deals with detailed descriptions of applications and interpretation of results. The cases studied include: screwing inside the vertebral pedicles, ilio-sacral screwing, prostatic radiotherapy and puncture of pericardial effusion. Future developments for this approach are discussed. (author)

  3. Image Segmentation for Connectomics Using Machine Learning

    Energy Technology Data Exchange (ETDEWEB)

    Tasdizen, Tolga; Seyedhosseini, Mojtaba; Liu, TIng; Jones, Cory; Jurrus, Elizabeth R.

    2014-12-01

    Reconstruction of neural circuits at the microscopic scale of individual neurons and synapses, also known as connectomics, is an important challenge for neuroscience. While an important motivation of connectomics is providing anatomical ground truth for neural circuit models, the ability to decipher neural wiring maps at the individual cell level is also important in studies of many neurodegenerative diseases. Reconstruction of a neural circuit at the individual neuron level requires the use of electron microscopy images due to their extremely high resolution. Computational challenges include pixel-by-pixel annotation of these images into classes such as cell membrane, mitochondria and synaptic vesicles and the segmentation of individual neurons. State-of-the-art image analysis solutions are still far from the accuracy and robustness of human vision and biologists are still limited to studying small neural circuits using mostly manual analysis. In this chapter, we describe our image analysis pipeline that makes use of novel supervised machine learning techniques to tackle this problem.

  4. Automatic segmentation of coronary artery tree based on multiscale Gabor filtering and transition region extraction

    Science.gov (United States)

    Wang, Fang; Wang, Guozhu; Kang, Lie; Wang, Juan

    2011-11-01

    This paper presents a novel segmentation method for extracting coronary artery tree from angiogram, which is based on multiscale Gabor filtering and transition region extraction. Firstly the enhanced image is obtained after multiscale Gabor filtering, then the transition region of the enhanced image is extracted using the local complexity algorithm, and the final segmentation threshold is calculated, finally the image segmentation is achieved. To evaluate the performance of the proposed approach, we carried out experiments on various sets of angiographic images, and compared its effects with those of the improved top-hat segmentation method. The experiments indicate that the proposed method outperforms the latter method about better extraction of small vessels, more background elimination, better visualized coronary artery tree and continuity of the vessels.

  5. [An adaptive threshloding segmentation method for urinary sediment image].

    Science.gov (United States)

    Li, Yongming; Zeng, Xiaoping; Qin, Jian; Han, Liang

    2009-02-01

    In this paper is proposed a new method to solve the segmentation of the complicated defocusing urinary sediment image. The main points of the method are: (1) using wavelet transforms and morphology to erase the effect of defocusing and realize the first segmentation, (2) using adaptive threshold processing in accordance to the subimages after wavelet processing, and (3) using 'peel off' algorithm to deal with the overlapped cells' segmentations. The experimental results showed that this method was not affected by the defocusing, and it made good use of many kinds of characteristics of the images. So this new mehtod can get very precise segmentation; it is effective for defocusing urinary sediment image segmentation.

  6. Automatic detection of informative frames from wireless capsule endoscopy images.

    Science.gov (United States)

    Bashar, M K; Kitasaka, T; Suenaga, Y; Mekada, Y; Mori, K

    2010-06-01

    Wireless capsule endoscopy (WCE) is a new clinical technology permitting visualization of the small bowel, the most difficult segment of the digestive tract. The major drawback of this technology is the excessive amount of time required for video diagnosis. We therefore propose a method for generating smaller videos by detecting informative frames from original WCE videos. This method isolates useless frames that are highly contaminated by turbid fluids, faecal materials and/or residual foods. These materials and fluids are presented in a wide range of colors, from brown to yellow, and/or have bubble-like texture patterns. The detection scheme therefore consists of two steps: isolating (Step-1) highly contaminated non-bubbled (HCN) frames and (Step-2) significantly bubbled (SB) frames. Two color representations, viz., local color moments in Ohta space and the HSV color histogram, are attempted to characterize HCN frames, which are isolated by a support vector machine (SVM) classifier in Step-1. The rest of the frames go to Step-2, where a Gauss Laguerre transform (GLT) based multiresolution texture feature is used to characterize the bubble structures in WCE frames. GLT uses Laguerre Gauss circular harmonic functions (LG-CHFs) to decompose WCE images into multiresolution components. An automatic method of segmentation was designed to extract bubbled regions from grayscale versions of the color images based on the local absolute energies of their CHF responses. The final informative frames were detected by using a threshold on the segmented regions. An automatic procedure for selecting features based on analyzing the consistency of the energy-contrast map is also proposed. Three experiments, two of which use 14,841 and 37,100 frames from three videos and the rest uses 66,582 frames from six videos, were conducted for justifying the proposed method. The two combinations of the proposed color and texture features showed excellent average detection accuracies (86

  7. Segmentation of Bone Structure in X-ray Images using Convolutional Neural Network

    Directory of Open Access Journals (Sweden)

    CERNAZANU-GLAVAN, C.

    2013-02-01

    Full Text Available The segmentation process represents a first step necessary for any automatic method of extracting information from an image. In the case of X-ray images, through segmentation we can differentiate the bone tissue from the rest of the image. There are nowadays several segmentation techniques, but in general, they all require the human intervention in the segmentation process. Consequently, this article proposes a new segmentation method for the X-ray images using a Convolutional Neural Network (CNN. In present, the convolutional networks are the best techniques for image segmentation. This fact is demonstrated by their wide usage in all the fields, including the medical one. As the X-ray images have large dimensions, for reducing the training time, the method proposed by the present article selects only certain areas (maximum interest areas from the entire image. The neural network is used as pixel classifier thus causing the label of each pixel (bone or none-bone from a raw pixel values in a square area. We will also present the method through which the network final configuration was chosen and we will make a comparative analysis with other 3 CNN configurations. The network chosen by us obtained the best results for all the evaluation metrics used, i.e. warping error, rand error and pixel error.

  8. Using scientifically and statistically sufficient statistics in comparing image segmentations.

    Science.gov (United States)

    Chi, Yueh-Yun; Muller, Keith E

    2010-01-01

    Automatic computer segmentation in three dimensions creates opportunity to reduce the cost of three-dimensional treatment planning of radiotherapy for cancer treatment. Comparisons between human and computer accuracy in segmenting kidneys in CT scans generate distance values far larger in number than the number of CT scans. Such high dimension, low sample size (HDLSS) data present a grand challenge to statisticians: how do we find good estimates and make credible inference? We recommend discovering and using scientifically and statistically sufficient statistics as an additional strategy for overcoming the curse of dimensionality. First, we reduced the three-dimensional array of distances for each image comparison to a histogram to be modeled individually. Second, we used non-parametric kernel density estimation to explore distributional patterns and assess multi-modality. Third, a systematic exploratory search for parametric distributions and truncated variations led to choosing a Gaussian form as approximating the distribution of a cube root transformation of distance. Fourth, representing each histogram by an individually estimated distribution eliminated the HDLSS problem by reducing on average 26,000 distances per histogram to just 2 parameter estimates. In the fifth and final step we used classical statistical methods to demonstrate that the two human observers disagreed significantly less with each other than with the computer segmentation. Nevertheless, the size of all disagreements was clinically unimportant relative to the size of a kidney. The hierarchal modeling approach to object-oriented data created response variables deemed sufficient by both the scientists and statisticians. We believe the same strategy provides a useful addition to the imaging toolkit and will succeed with many other high throughput technologies in genetics, metabolomics and chemical analysis. PMID:24967000

  9. Simultaneous hierarchical segmentation and vectorization of satellite images through combined data sampling and anisotropic triangulation

    Energy Technology Data Exchange (ETDEWEB)

    Grazzini, Jacopo [Los Alamos National Laboratory; Prasad, Lakshman [Los Alamos National Laboratory; Dillard, Scott [PNNL

    2010-10-21

    The automatic detection, recognition , and segmentation of object classes in remote sensed images is of crucial importance for scene interpretation and understanding. However, it is a difficult task because of the high variability of satellite data. Indeed, the observed scenes usually exhibit a high degree of complexity, where complexity refers to the large variety of pictorial representations of objects with the same semantic meaning and also to the extensive amount of available det.ails. Therefore, there is still a strong demand for robust techniques for automatic information extraction and interpretation of satellite images. In parallel, there is a growing interest in techniques that can extract vector features directly from such imagery. In this paper, we investigate the problem of automatic hierarchical segmentation and vectorization of multispectral satellite images. We propose a new algorithm composed of the following steps: (i) a non-uniform sampling scheme extracting most salient pixels in the image, (ii) an anisotropic triangulation constrained by the sampled pixels taking into account both strength and directionality of local structures present in the image, (iii) a polygonal grouping scheme merging, through techniques based on perceptual information , the obtained segments to a smaller quantity of superior vectorial objects. Besides its computational efficiency, this approach provides a meaningful polygonal representation for subsequent image analysis and/or interpretation.

  10. SVM for density estimation and application to medical image segmentation

    Institute of Scientific and Technical Information of China (English)

    ZHANG Zhao; ZHANG Su; ZHANG Chen-xi; CHEN Ya-zhu

    2006-01-01

    A method of medical image segmentation based on support vector machine (SVM) for density estimation is presented. We used this estimator to construct a prior model of the image intensity and curvature profile of the structure from training images. When segmenting a novel image similar to the training images, the technique of narrow level set method is used. The higher dimensional surface evolution metric is defined by the prior model instead of by energy minimization function. This method offers several advantages. First, SVM for density estimation is consistent and its solution is sparse. Second, compared to the traditional level set methods, this method incorporates shape information on the object to be segmented into the segmentation process.Segmentation results are demonstrated on synthetic images, MR images and ultrasonic images.

  11. Graph Cuts based Image Segmentation using Fuzzy Rule Based System

    Directory of Open Access Journals (Sweden)

    M. R. Khokher

    2012-12-01

    Full Text Available This work deals with the segmentation of gray scale, color and texture images using graph cuts. From input image, a graph is constructed using intensity, color and texture profiles of the image simultaneously. Based on the nature of image, a fuzzy rule based system is designed to find the weight that should be given to a specific image feature during graph development. The graph obtained from the fuzzy rule based weighted average of different image features is further used in normalized graph cuts framework. Graph is iteratively bi-partitioned through the normalized graph cuts algorithm to get optimum partitions resulting in the segmented image. Berkeley segmentation database is used to test our algorithm and the segmentation results are evaluated through probabilistic rand index, global consistency error, sensitivity, positive predictive value and Dice similarity coefficient. It is shown that the presented segmentation method provides effective results for most types of images.

  12. SAR image target segmentation based on entropy maximization and morphology

    Institute of Scientific and Technical Information of China (English)

    柏正尧; 刘洲峰; 何佩琨

    2004-01-01

    Entropy maximization thresholding is a simple, effective image segmentation method. The relation between the histogram entropy and the gray level of an image is analyzed. An approach, which speeds the computation of optimal threshold based on entropy maximization, is proposed. The suggested method has been applied to the synthetic aperture radar (SAR) image targets segmentation. Mathematical morphology works well in reducing the residual noise.

  13. A CT Image Segmentation Algorithm Based on Level Set Method

    Institute of Scientific and Technical Information of China (English)

    QU Jing-yi; SHI Hao-shan

    2006-01-01

    Level Set methods are robust and efficient numerical tools for resolving curve evolution in image segmentation. This paper proposes a new image segmentation algorithm based on Mumford-Shah module. The method is used to CT images and the experiment results demonstrate its efficiency and veracity.

  14. Application of reinforcement learning for segmentation of transrectal ultrasound images

    Directory of Open Access Journals (Sweden)

    Tizhoosh Hamid R

    2008-04-01

    Full Text Available Abstract Background Among different medical image modalities, ultrasound imaging has a very widespread clinical use. But, due to some factors, such as poor image contrast, noise and missing or diffuse boundaries, the ultrasound images are inherently difficult to segment. An important application is estimation of the location and volume of the prostate in transrectal ultrasound (TRUS images. For this purpose, manual segmentation is a tedious and time consuming procedure. Methods We introduce a new method for the segmentation of the prostate in transrectal ultrasound images, using a reinforcement learning scheme. This algorithm is used to find the appropriate local values for sub-images and to extract the prostate. It contains an offline stage, where the reinforcement learning agent uses some images and manually segmented versions of these images to learn from. The reinforcement agent is provided with reward/punishment, determined objectively to explore/exploit the solution space. After this stage, the agent has acquired knowledge stored in the Q-matrix. The agent can then use this knowledge for new input images to extract a coarse version of the prostate. Results We have carried out experiments to segment TRUS images. The results demonstrate the potential of this approach in the field of medical image segmentation. Conclusion By using the proposed method, we can find the appropriate local values and segment the prostate. This approach can be used for segmentation tasks containing one object of interest. To improve this prototype, more investigations are needed.

  15. Automatic detection and segmentation of stems of potted tomato plant using Kinect

    Science.gov (United States)

    Fu, Daichang; Xu, Lihong; Li, Dawei; Xin, Longjiao

    2014-04-01

    The automatic segmentation and recognition of greenhouse crop is an important aspect in digitized facility agriculture. Crop stems are closely related with the growth of the crop. Meanwhile, they are also an important physiological trait to identify the species of plants. For these reasons, this paper focuses on the digitization process to collect and analysis stems of greenhouse plants (tomatoes). An algorithm for automatic stem detection and extraction is proposed, based on a cheap and effective stereo vision system—Kinect. In order to demonstrate the usefulness and the potential applicability of our algorithm, a virtual tomato plant, whose stems are rendered by segmented stem texture samples, is reconstructed on OpenGL graphic platform.

  16. The Research of ECG Signal Automatic Segmentation Algorithm Based on Fractal Dimension Trajectory

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    <正>In this paper a kind of ECG signal automatic segmentation algorithm based on ECG fractal dimension trajectory is put forward.First,the ECG signal will be analyzed,then constructing the fractal dimension trajectory of ECG signal according to the fractal dimension trajectory constructing algorithm,finally,obtaining ECG signal feature points and ECG automatic segmentation will be realized by the feature of ECG signal fractal dimension trajectory and the feature of ECG frequency domain characteristics.Through Matlab simulation of the algorithm,the results showed that by constructing the ECG fractal dimension trajectory enables ECG location of each component displayed clearly and obtains high success rate of sub-ECG,providing a basis to identify the various components of ECG signal accurately.

  17. Model based 3D segmentation and OCT image undistortion of percutaneous implants.

    Science.gov (United States)

    Müller, Oliver; Donner, Sabine; Klinder, Tobias; Dragon, Ralf; Bartsch, Ivonne; Witte, Frank; Krüger, Alexander; Heisterkamp, Alexander; Rosenhahn, Bodo

    2011-01-01

    Optical Coherence Tomography (OCT) is a noninvasive imaging technique which is used here for in vivo biocompatibility studies of percutaneous implants. A prerequisite for a morphometric analysis of the OCT images is the correction of optical distortions caused by the index of refraction in the tissue. We propose a fully automatic approach for 3D segmentation of percutaneous implants using Markov random fields. Refraction correction is done by using the subcutaneous implant base as a prior for model based estimation of the refractive index using a generalized Hough transform. Experiments show the competitiveness of our algorithm towards manual segmentations done by experts. PMID:22003731

  18. Automatic measurement of cusps in 2.5D dental images

    Science.gov (United States)

    Wolf, Mattias; Paulus, Dietrich W.; Niemann, Heinrich

    1996-01-01

    Automatic reconstruction of occlusal surfaces of teeth is an application which might become more and more urgent due to the toxicity of amalgam. Modern dental chairside equipment is currently restricted to the production of inlays. The automatic reconstruction of the occlusal surface is presently not possible. For manufacturing an occlusal surface it is required to extract features from which it is possible to reconstruct destroyed teeth. In this paper, we demonstrate how intact upper molars can be automatically extracted in dental range and intensity images. After normalization of the 3D location, the sizes of the cusps are detected and the distances between them are calculated. In the presented approach, the detection of the upper molar is based on a knowledge-based segmentation which includes anatomic knowledge. After the segmentation of the interesting tooth the central fossa is calculated. The normalization of the spatial location is archieved by aligning the detected fossa with a reference axis. After searching the cusp tips in the range image the image is resized. The methods have been successfully tested on 60 images. The results have been compared with the results of a dentist's evaluation on a sample of 20 images. The results will be further used for automatic production of tooth inlays.

  19. Advanced techniques in medical image segmentation of the liver

    OpenAIRE

    López Mir, Fernando

    2016-01-01

    [EN] Image segmentation is, along with multimodal and monomodal registration, the operation with the greatest applicability in medical image processing. There are many operations and filters, as much as applications and cases, where the segmentation of an organic tissue is the first step. The case of liver segmentation in radiological images is, after the brain, that on which the highest number of scientific publications can be found. This is due, on the one hand, to the need to continue inno...

  20. Automatic Segmentation Framework of Building Anatomical Mouse Model for Bioluminescence Tomography

    OpenAIRE

    Abdullah Alali

    2013-01-01

    Bioluminescence tomography is known as a highly ill-posed inverse problem. To improve the reconstruction performance by introducing anatomical structures as a priori knowledge, an automatic segmentation framework has been proposed in this paper to extract the mouse whole-body organs and tissues, which enables to build up a heterogeneous mouse model for reconstruction of bioluminescence tomography. Finally, an in vivo mouse experiment has been conducted to evaluate this framework by using an X...

  1. Applications of magnetic resonance image segmentation in neurology

    Science.gov (United States)

    Heinonen, Tomi; Lahtinen, Antti J.; Dastidar, Prasun; Ryymin, Pertti; Laarne, Paeivi; Malmivuo, Jaakko; Laasonen, Erkki; Frey, Harry; Eskola, Hannu

    1999-05-01

    After the introduction of digital imagin devices in medicine computerized tissue recognition and classification have become important in research and clinical applications. Segmented data can be applied among numerous research fields including volumetric analysis of particular tissues and structures, construction of anatomical modes, 3D visualization, and multimodal visualization, hence making segmentation essential in modern image analysis. In this research project several PC based software were developed in order to segment medical images, to visualize raw and segmented images in 3D, and to produce EEG brain maps in which MR images and EEG signals were integrated. The software package was tested and validated in numerous clinical research projects in hospital environment.

  2. Image Segmentation by Hierarchical Spatial and Color Spaces Clustering

    Institute of Scientific and Technical Information of China (English)

    YU Wei

    2005-01-01

    Image segmentation, as a basic building block for many high-level image analysis problems, has attracted many research attentions over years. Existing approaches, however, are mainly focusing on the clustering analysis in the single channel information, i.e., either in color or spatial space, which may lead to unsatisfactory segmentation performance. Considering the spatial and color spaces jointly, this paper proposes a new hierarchical image segmentation algorithm, which alternately clusters the image regions in color and spatial spaces in a fine to coarse manner. Without losing the perceptual consistence, the proposed algorithm achieves the segmentation result using only very few number of colors according to user specification.

  3. The use of atlas registration and graph cuts for prostate segmentation in magnetic resonance images

    Energy Technology Data Exchange (ETDEWEB)

    Korsager, Anne Sofie, E-mail: asko@hst.aau.dk; Østergaard, Lasse Riis [Department of Health Science and Technology, Aalborg University, Aalborg 9220 (Denmark); Fortunati, Valerio; Lijn, Fedde van der; Niessen, Wiro; Walsum, Theo van [Biomedical Imaging Group of Rotterdam, Department of Medical Informatics and Radiology, Erasmus MC, Rotterdam 3015 GE Rotterdam (Netherlands); Carl, Jesper [Department of Medical Physics, Oncology, Aalborg University Hospital, Aalborg 9220 (Denmark)

    2015-04-15

    Purpose: An automatic method for 3D prostate segmentation in magnetic resonance (MR) images is presented for planning image-guided radiotherapy treatment of prostate cancer. Methods: A spatial prior based on intersubject atlas registration is combined with organ-specific intensity information in a graph cut segmentation framework. The segmentation is tested on 67 axial T{sub 2}-weighted MR images in a leave-one-out cross validation experiment and compared with both manual reference segmentations and with multiatlas-based segmentations using majority voting atlas fusion. The impact of atlas selection is investigated in both the traditional atlas-based segmentation and the new graph cut method that combines atlas and intensity information in order to improve the segmentation accuracy. Best results were achieved using the method that combines intensity information, shape information, and atlas selection in the graph cut framework. Results: A mean Dice similarity coefficient (DSC) of 0.88 and a mean surface distance (MSD) of 1.45 mm with respect to the manual delineation were achieved. Conclusions: This approaches the interobserver DSC of 0.90 and interobserver MSD 0f 1.15 mm and is comparable to other studies performing prostate segmentation in MR.

  4. Word Chain-based Automatic Word Segmentation Method%基于词链的自动分词方法

    Institute of Scientific and Technical Information of China (English)

    杨建林; 张国梁

    2000-01-01

    An algorithm for automatic segmentation of Chinese word,which is an improved version of the minimum matching algorithm,is put forward.The key idea of the algorithm is to optimize the word bank and the matching process to enhance the speed and accuracy of word segmentation.By integrating the case bank for processing ambiguous word chain with relevant segmentation rules,the correctness of word segmentation is enhanced,which partly makes up the deficiency in processing natural language.

  5. A novel stepwise thresholding for fuzzy image segmentation

    Institute of Scientific and Technical Information of China (English)

    HE Xiao-hai; LUO Dai-sheng; WU Xiao-qiang; JIANG Li; TENG Qi-zhi; Tao De-yuan

    2001-01-01

    A novel stepwise thresholding method for fuzzy image segmentation is proposed. Unlike the published iterative or recursive thresholding mehtods, this method segments regions into sub-regions iteratively by increasing threshold value in a stepwise manner, based on a preset intensity homogeneity criteria. The method is particularly suited to segmentation of the laser scanning confocal microscopy (LSCM) images, computerised tomography (CT) images, magnetic resonance (MR) images, fingerprint images, etc. The method has been tested on some typical fuzzy image data sets. In this paper, the novel stepwise thresholding is first addressed. Next a new method of region labelling for region extraction is introduced.Then the design of intensity homogeneity segmentation criteria is presented. Some examples of the experiment results of fuzzy image segmentation by the method are given at the end.

  6. Robust semi-automatic segmentation of single- and multichannel MRI volumes through adaptable class-specific representation

    Science.gov (United States)

    Nielsen, Casper F.; Passmore, Peter J.

    2002-05-01

    Segmentation of MRI volumes is complicated by noise, inhomogeneity and partial volume artefacts. Fully or semi-automatic methods often require time consuming or unintuitive initialization. Adaptable Class-Specific Representation (ACSR) is a semi-automatic segmentation framework implemented by the Path Growing Algorithm (PGA), which reduces artefacts near segment boundaries. The user visually defines the desired segment classes through the selection of class templates and the following segmentation process is fully automatic. Good results have previously been achieved with color cryo section segmentation and ACSR has been developed further for the MRI modality. In this paper we present two optimizations for robust ACSR segmentation of MRI volumes. Automatic template creation based on an initial segmentation step using Learning Vector Quantization is applied for higher robustness to noise. Inhomogeneity correction is added as a pre-processing step, comparing the EQ and N3 algorithms. Results based on simulated T1-weighed and multispectral (T1 and T2) MRI data from the BrainWeb database and real data from the Internet Brain Segmentation Repository are presented. We show that ACSR segmentation compares favorably to previously published results on the same volumes and discuss the pros and cons of using quantitative ground truth evaluation compared to qualitative visual assessment.

  7. Hybrid segmentation framework for 3D medical image analysis

    Science.gov (United States)

    Chen, Ting; Metaxas, Dimitri N.

    2003-05-01

    Medical image segmentation is the process that defines the region of interest in the image volume. Classical segmentation methods such as region-based methods and boundary-based methods cannot make full use of the information provided by the image. In this paper we proposed a general hybrid framework for 3D medical image segmentation purposes. In our approach we combine the Gibbs Prior model, and the deformable model. First, Gibbs Prior models are applied onto each slice in a 3D medical image volume and the segmentation results are combined to a 3D binary masks of the object. Then we create a deformable mesh based on this 3D binary mask. The deformable model will be lead to the edge features in the volume with the help of image derived external forces. The deformable model segmentation result can be used to update the parameters for Gibbs Prior models. These methods will then work recursively to reach a global segmentation solution. The hybrid segmentation framework has been applied to images with the objective of lung, heart, colon, jaw, tumor, and brain. The experimental data includes MRI (T1, T2, PD), CT, X-ray, Ultra-Sound images. High quality results are achieved with relatively efficient time cost. We also did validation work using expert manual segmentation as the ground truth. The result shows that the hybrid segmentation may have further clinical use.

  8. Automatic Web Image Categorization by Image Content:A case study with Web Document Images

    OpenAIRE

    Dr.Murugappan S; Abirami S; Mizpha Poorana Selvi S

    2010-01-01

    Crawling in Web images has become a challenging problem today due to its rising popularity. Among the most valuable Web assets, Categorizing images on the Web is quite difficult. This paper proposes a simple and effective method to separate the Document Images from the available web image sources. This system concentrates on Automatic Image categorization process over web images by employing a filtering technique to discriminate the document images, available in WWW. The strength of this tech...

  9. Automatic segmentation and classification of mycobacterium tuberculosis with conventional light microscopy

    Science.gov (United States)

    Xu, Chao; Zhou, Dongxiang; Zhai, Yongping; Liu, Yunhui

    2015-12-01

    This paper realizes the automatic segmentation and classification of Mycobacterium tuberculosis with conventional light microscopy. First, the candidate bacillus objects are segmented by the marker-based watershed transform. The markers are obtained by an adaptive threshold segmentation based on the adaptive scale Gaussian filter. The scale of the Gaussian filter is determined according to the color model of the bacillus objects. Then the candidate objects are extracted integrally after region merging and contaminations elimination. Second, the shape features of the bacillus objects are characterized by the Hu moments, compactness, eccentricity, and roughness, which are used to classify the single, touching and non-bacillus objects. We evaluated the logistic regression, random forest, and intersection kernel support vector machines classifiers in classifying the bacillus objects respectively. Experimental results demonstrate that the proposed method yields to high robustness and accuracy. The logistic regression classifier performs best with an accuracy of 91.68%.

  10. AUTOMATIC SEGMENTATION OF BROADCAST AUDIO SIGNALS USING AUTO ASSOCIATIVE NEURAL NETWORKS

    Directory of Open Access Journals (Sweden)

    P. Dhanalakshmi

    2010-12-01

    Full Text Available In this paper, we describe automatic segmentation methods for audio broadcast data. Today, digital audio applications are part of our everyday lives. Since there are more and more digital audio databases in place these days, the importance of effective management for audio databases have become prominent. Broadcast audio data is recorded from the Television which comprises of various categories of audio signals. Efficient algorithms for segmenting the audio broadcast data into predefined categories are proposed. Audio features namely Linear prediction coefficients (LPC, Linear prediction cepstral coefficients, and Mel frequency cepstral coefficients (MFCC are extracted to characterize the audio data. Auto Associative Neural Networks are used to segment the audio data into predefined categories using the extracted features. Experimental results indicate that the proposed algorithms can produce satisfactory results.

  11. Fuzzy entropy image segmentation based on particle Swarm optimization

    Institute of Scientific and Technical Information of China (English)

    Linyi Li; Deren Li

    2008-01-01

    Partide swaFnl optimization is a stochastic global optimization algorithm that is based on swarm intelligence.Because of its excellent performance,particle swarm optimization is introduced into fuzzy entropy image segmentation to select the optimal fuzzy parameter combination and fuzzy threshold adaptively.In this study,the particles in the swarm are constructed and the swarm search strategy is proposed to meet the needs of the segmentation application.Then fuzzy entropy image segmentation based on particle swarm opti-mization is implemented and the proposed method obtains satisfactory results in the segmentation experiments.Compared with the exhaustive search method,particle swarm optimization can give the salne optimal fuzzy parameter combination and fuzzy threshold while needing less search time in the segmentation experiments and also has good search stability in the repeated experiments.Therefore,fuzzy entropy image segmentation based on particle swarm optimization is an efficient and promising segmentation method.

  12. Automatic corpus callosum segmentation using a deformable active Fourier contour model

    Science.gov (United States)

    Vachet, Clement; Yvernault, Benjamin; Bhatt, Kshamta; Smith, Rachel G.; Gerig, Guido; Cody Hazlett, Heather; Styner, Martin

    2012-03-01

    The corpus callosum (CC) is a structure of interest in many neuroimaging studies of neuro-developmental pathology such as autism. It plays an integral role in relaying sensory, motor and cognitive information from homologous regions in both hemispheres. We have developed a framework that allows automatic segmentation of the corpus callosum and its lobar subdivisions. Our approach employs constrained elastic deformation of flexible Fourier contour model, and is an extension of Szekely's 2D Fourier descriptor based Active Shape Model. The shape and appearance model, derived from a large mixed population of 150+ subjects, is described with complex Fourier descriptors in a principal component shape space. Using MNI space aligned T1w MRI data, the CC segmentation is initialized on the mid-sagittal plane using the tissue segmentation. A multi-step optimization strategy, with two constrained steps and a final unconstrained step, is then applied. If needed, interactive segmentation can be performed via contour repulsion points. Lobar connectivity based parcellation of the corpus callosum can finally be computed via the use of a probabilistic CC subdivision model. Our analysis framework has been integrated in an open-source, end-to-end application called CCSeg both with a command line and Qt-based graphical user interface (available on NITRC). A study has been performed to quantify the reliability of the semi-automatic segmentation on a small pediatric dataset. Using 5 subjects randomly segmented 3 times by two experts, the intra-class correlation coefficient showed a superb reliability (0.99). CCSeg is currently applied to a large longitudinal pediatric study of brain development in autism.

  13. General Purpose Segmentation for Microorganisms in Microscopy Images

    DEFF Research Database (Denmark)

    Jensen, Sebastian H. Nesgaard; Moeslund, Thomas B.; Rankl, Christian

    2014-01-01

    In this paper, we propose an approach for achieving generalized segmentation of microorganisms in mi- croscopy images. It employs a pixel-wise classification strategy based on local features. Multilayer percep- trons are utilized for classification of the local features and is trained for each...... specific segmentation problem using supervised learning. This approach was tested on five different segmentation problems in bright field, differential interference contrast, fluorescence and laser confocal scanning microscopy. In all instance good results were achieved with the segmentation quality...

  14. Evaluation of an atlas-based automatic segmentation software for the delineation of brain organs at risk in a radiation therapy clinical context

    International Nuclear Information System (INIS)

    Background and purpose: Conformal radiation therapy techniques require the delineation of volumes of interest, a time-consuming and operator-dependent task. In this work, we aimed to evaluate the potential interest of an atlas-based automatic segmentation software (ABAS) of brain organs at risk (OAR), when used under our clinical conditions. Materials and methods: Automatic and manual segmentations of the eyes, optic nerves, optic chiasm, pituitary gland, brain stem and cerebellum of 11 patients on T1-weighted magnetic resonance, 3-mm thick slice images were compared using the Dice similarity coefficient (DSC). The sensitivity and specificity of the ABAS were also computed and analysed from a radiotherapy point of view by splitting the ROC (Receiver Operating Characteristic) space into four sub-regions. Results: Automatic segmentation of OAR was achieved in 7-8 min. Excellent agreement was obtained between automatic and manual delineations for organs exceeding 7 cm3: the DSC was greater than 0.8. For smaller structures, the DSC was lower than 0.41. Conclusions: These tests demonstrated that this ABAS is a robust and reliable tool for automatic delineation of large structures under clinical conditions in our daily practice, even though the small structures must continue to be delineated manually by an expert

  15. Twelve automated thresholding methods for segmentation of PET images: a phantom study

    Science.gov (United States)

    Prieto, Elena; Lecumberri, Pablo; Pagola, Miguel; Gómez, Marisol; Bilbao, Izaskun; Ecay, Margarita; Peñuelas, Iván; Martí-Climent, Josep M.

    2012-06-01

    Tumor volume delineation over positron emission tomography (PET) images is of great interest for proper diagnosis and therapy planning. However, standard segmentation techniques (manual or semi-automated) are operator dependent and time consuming while fully automated procedures are cumbersome or require complex mathematical development. The aim of this study was to segment PET images in a fully automated way by implementing a set of 12 automated thresholding algorithms, classical in the fields of optical character recognition, tissue engineering or non-destructive testing images in high-tech structures. Automated thresholding algorithms select a specific threshold for each image without any a priori spatial information of the segmented object or any special calibration of the tomograph, as opposed to usual thresholding methods for PET. Spherical 18F-filled objects of different volumes were acquired on clinical PET/CT and on a small animal PET scanner, with three different signal-to-background ratios. Images were segmented with 12 automatic thresholding algorithms and results were compared with the standard segmentation reference, a threshold at 42% of the maximum uptake. Ridler and Ramesh thresholding algorithms based on clustering and histogram-shape information, respectively, provided better results that the classical 42%-based threshold (p < 0.05). We have herein demonstrated that fully automated thresholding algorithms can provide better results than classical PET segmentation tools.

  16. Twelve automated thresholding methods for segmentation of PET images: a phantom study

    International Nuclear Information System (INIS)

    Tumor volume delineation over positron emission tomography (PET) images is of great interest for proper diagnosis and therapy planning. However, standard segmentation techniques (manual or semi-automated) are operator dependent and time consuming while fully automated procedures are cumbersome or require complex mathematical development. The aim of this study was to segment PET images in a fully automated way by implementing a set of 12 automated thresholding algorithms, classical in the fields of optical character recognition, tissue engineering or non-destructive testing images in high-tech structures. Automated thresholding algorithms select a specific threshold for each image without any a priori spatial information of the segmented object or any special calibration of the tomograph, as opposed to usual thresholding methods for PET. Spherical 18F-filled objects of different volumes were acquired on clinical PET/CT and on a small animal PET scanner, with three different signal-to-background ratios. Images were segmented with 12 automatic thresholding algorithms and results were compared with the standard segmentation reference, a threshold at 42% of the maximum uptake. Ridler and Ramesh thresholding algorithms based on clustering and histogram-shape information, respectively, provided better results that the classical 42%-based threshold (p < 0.05). We have herein demonstrated that fully automated thresholding algorithms can provide better results than classical PET segmentation tools. (paper)

  17. Critical Assessment of Object Segmentation in Aerial Image Using Geo-Hausdorff Distance

    Science.gov (United States)

    Sun, H.; Ding, Y.; Huang, Y.; Wang, G.

    2016-06-01

    Aerial Image records the large-range earth objects with the ever-improving spatial and radiometric resolution. It becomes a powerful tool for earth observation, land-coverage survey, geographical census, etc., and helps delineating the boundary of different kinds of objects on the earth both manually and automatically. In light of the geo-spatial correspondence between the pixel locations of aerial image and the spatial coordinates of ground objects, there is an increasing need of super-pixel segmentation and high-accuracy positioning of objects in aerial image. Besides the commercial software package of eCognition and ENVI, many algorithms have also been developed in the literature to segment objects of aerial images. But how to evaluate the segmentation results remains a challenge, especially in the context of the geo-spatial correspondence. The Geo-Hausdorff Distance (GHD) is proposed to measure the geo-spatial distance between the results of various object segmentation that can be done with the manual ground truth or with the automatic algorithms.Based on the early-breaking and random-sampling design, the GHD calculates the geographical Hausdorff distance with nearly-linear complexity. Segmentation results of several state-of-the-art algorithms, including those of the commercial packages, are evaluated with a diverse set of aerial images. They have different signal-to-noise ratio around the object boundaries and are hard to trace correctly even for human operators. The GHD value is analyzed to comprehensively measure the suitability of different object segmentation methods for aerial images of different spatial resolution. By critically assessing the strengths and limitations of the existing algorithms, the paper provides valuable insight and guideline for extensive research in automating object detection and classification of aerial image in the nation-wide geographic census. It is also promising for the optimal design of operational specification of remote

  18. Automatic extraction of lunar impact craters from Chang'E images based on Hough transform and RANSAC

    Science.gov (United States)

    Luo, Zhongfei; Kang, Zhizhong

    2016-03-01

    This article proposed an algorithm combining Hough transform and RANSAC algorithm for automatic extraction of lunar craters. (1) In order to suppress noise, the images were filtered; (2) The edge of image were extracted, subsequently, eliminate false edge points by qualifying the gradient direction and the area of connected domain; (3) The edge images were segmented through Hough transform, gathering the same crater edge points together; (4) The edge images after segmentation were fitted using RANSAC algorithm, getting the high precision parameter. High precision of the algorithm was verified by the experiments of images acquired by the Chang'E-1 satellites.

  19. Fuzzy Clustering Algorithms for Effective Medical Image Segmentation

    OpenAIRE

    Deepali Aneja; Tarun Kumar Rawat

    2013-01-01

    Medical image segmentation demands a segmentation algorithm which works against noise. The most popular algorithm used in image segmentation is Fuzzy C-Means clustering. It uses only intensity values for clustering which makes it highly sensitive to noise. The comparison of the three fundamental image segmentation methods based on fuzzy logic namely Fuzzy C-Means (FCM), Intuitionistic Fuzzy C-Means (IFCM), and Type-II Fuzzy C-Means (T2FCM) is presented in this paper. These algorithms are exe...

  20. MAP segmentation of magnetic resonance images using mean field annealing

    Science.gov (United States)

    Logenthiran, Ambalavaner; Snyder, Wesley E.; Santago, Peter, II; Link, Kerry M.

    1991-06-01

    An algorithm is described which segments magnetic resonance images while removing the noise from the images without blurring or other distortion of edges. The problem of segmentation and noise removal is posed as a restoration of an uncorrupted image, given additive white Gaussian noise and a segmentation cost. The problem is solved using a strategy called Mean Field Annealing. An a priori statistical model of the image, which includes the region classification, is chosen which drives the minimization toward solutions which are locally homogeneous and globally classified. Application of the algorithm to brain and knee images is presented.

  1. Automatic system for quantification and visualization of lung aeration on chest computed tomography images: the Lung Image System Analysis - LISA

    Energy Technology Data Exchange (ETDEWEB)

    Felix, John Hebert da Silva; Cortez, Paulo Cesar, E-mail: jhsfelix@gmail.co [Universidade Federal do Ceara (UFC), Fortaleza, CE (Brazil). Dept. de Engenharia de Teleinformatica; Holanda, Marcelo Alcantara [Universidade Federal do Ceara (UFC), Fortaleza, CE (Brazil). Hospital Universitario Walter Cantidio. Dept. de Medicina Clinica

    2010-12-15

    High Resolution Computed Tomography (HRCT) is the exam of choice for the diagnostic evaluation of lung parenchyma diseases. There is an increasing interest for computational systems able to automatically analyze the radiological densities of the lungs in CT images. The main objective of this study is to present a system for the automatic quantification and visualization of the lung aeration in HRCT images of different degrees of aeration, called Lung Image System Analysis (LISA). The secondary objective is to compare LISA to the Osiris system and also to specific algorithm lung segmentation (ALS), on the accuracy of the lungs segmentation. The LISA system automatically extracts the following image attributes: lungs perimeter, cross sectional area, volume, the radiological densities histograms, the mean lung density (MLD) in Hounsfield units (HU), the relative area of the lungs with voxels with density values lower than -950 HU (RA950) and the 15th percentile of the least density voxels (PERC15). Furthermore, LISA has a colored mask algorithm that applies pseudo-colors to the lung parenchyma according to the pre-defined radiological density chosen by the system user. The lungs segmentations of 102 images of 8 healthy volunteers and 141 images of 11 patients with Chronic Obstructive Pulmonary Disease (COPD) were compared on the accuracy and concordance among the three methods. The LISA was more effective on lungs segmentation than the other two methods. LISA's color mask tool improves the spatial visualization of the degrees of lung aeration and the various attributes of the image that can be extracted may help physicians and researchers to better assess lung aeration both quantitatively and qualitatively. LISA may have important clinical and research applications on the assessment of global and regional lung aeration and therefore deserves further developments and validation studies. (author)

  2. Beef Marbling Image Segmentation Based on Homomorphic Filtering

    OpenAIRE

    Bin Pang; Xiao Sun; Deying Liu; Kunjie Chen

    2014-01-01

    In order to reduce the influence of uneven illumination and reflect light for beef accurate segmentation, a beef marbling segmentation method based on homomorphic filtering was introduced. Aiming at the beef rib-eye region images in the frequency domain, homomorphic filter was used for enhancing gray, R, G and B 4 chroma images. Then the impact of high frequency /low frequency gain factors on the accuracy of beef marbling segmentation was investigated. Appropriate values of gain factors were ...

  3. Optimization of Segmentation Quality of Integrated Circuit Images

    Directory of Open Access Journals (Sweden)

    Gintautas Mušketas

    2012-04-01

    Full Text Available The paper presents investigation into the application of genetic algorithms for the segmentation of the active regions of integrated circuit images. This article is dedicated to a theoretical examination of the applied methods (morphological dilation, erosion, hit-and-miss, threshold and describes genetic algorithms, image segmentation as optimization problem. The genetic optimization of the predefined filter sequence parameters is carried out. Improvement to segmentation accuracy using a non optimized filter sequence makes 6%.Artcile in Lithuanian

  4. Database-guided breast tumor detection and segmentation in 2D ultrasound images

    Science.gov (United States)

    Zhang, Jingdan; Zhou, Shaohua K.; Brunke, Shelby; Lowery, Carol; Comaniciu, Dorin

    2010-03-01

    Ultrasonography is a valuable technique for diagnosing breast cancer. Computer-aided tumor detection and segmentation in ultrasound images can reduce labor cost and streamline clinic workflows. In this paper, we propose a fully automatic system to detect and segment breast tumors in 2D ultrasound images. Our system, based on database-guided techniques, learns the knowledge of breast tumor appearance exemplified by expert annotations. For tumor detection, we train a classifier to discriminate between tumors and their background. For tumor segmentation, we propose a discriminative graph cut approach, where both the data fidelity and compatibility functions are learned discriminatively. The performance of the proposed algorithms is demonstrated on a large set of 347 images, achieving a mean contour-to-contour error of 3.75 pixels with about 4.33 seconds.

  5. A Topological derivative based image segmentation for sign language recognition system using isotropic filter

    CERN Document Server

    Krishnaveni, M

    2010-01-01

    The need of sign language is increasing radically especially to hearing impaired community. Only few research groups try to automatically recognize sign language from video, colored gloves and etc. Their approach requires a valid segmentation of the data that is used for training and of the data that is used to be recognized. Recognition of a sign language image sequence is challenging because of the variety of hand shapes and hand motions. Here, this paper proposes to apply a combination of image segmentation with restoration using topological derivatives for achieving high recognition accuracy. Image quality measures are conceded here to differentiate the methods both subjectively as well as objectively. Experiments show that the additional use of the restoration before segmenting the postures significantly improves the correct rate of hand detection, and that the discrete derivatives yields a high rate of discrimination between different static hand postures as well as between hand postures and the scene b...

  6. A new level set model for cell image segmentation

    Science.gov (United States)

    Ma, Jing-Feng; Hou, Kai; Bao, Shang-Lian; Chen, Chun

    2011-02-01

    In this paper we first determine three phases of cell images: background, cytoplasm and nucleolus according to the general physical characteristics of cell images, and then develop a variational model, based on these characteristics, to segment nucleolus and cytoplasm from their relatively complicated backgrounds. In the meantime, the preprocessing obtained information of cell images using the OTSU algorithm is used to initialize the level set function in the model, which can speed up the segmentation and present satisfactory results in cell image processing.

  7. A new level set model for cell image segmentation

    Institute of Scientific and Technical Information of China (English)

    Ma Jing-Feng; Hou Kai; Bao Shang-Lian; Chen Chun

    2011-01-01

    In this paper we first determine three phases of cell images: background, cytoplasm and nucleolus according to the general physical characteristics of cell images, and then develop a variational model, based on these characteristics, to segment nucleolus and cytoplasm from their relatively complicated backgrounds. In the meantime, the preprocessing obtained information of cell images using the OTSU algorithm is used to initialize the level set function in the model, which can speed up the segmentation and present satisfactory results in cell image processing.

  8. Color Image Segmentation via Improved K-Means Algorithm

    Directory of Open Access Journals (Sweden)

    Ajay Kumar

    2016-03-01

    Full Text Available Data clustering techniques are often used to segment the real world images. Unsupervised image segmentation algorithms that are based on the clustering suffer from random initialization. There is a need for efficient and effective image segmentation algorithm, which can be used in the computer vision, object recognition, image recognition, or compression. To address these problems, the authors present a density-based initialization scheme to segment the color images. In the kernel density based clustering technique, the data sample is mapped to a high-dimensional space for the effective data classification. The Gaussian kernel is used for the density estimation and for the mapping of sample image into a high- dimensional color space. The proposed initialization scheme for the k-means clustering algorithm can homogenously segment an image into the regions of interest with the capability of avoiding the dead centre and the trapped centre by local minima phenomena. The performance of the experimental result indicates that the proposed approach is more effective, compared to the other existing clustering-based image segmentation algorithms. In the proposed approach, the Berkeley image database has been used for the comparison analysis with the recent clustering-based image segmentation algorithms like k-means++, k-medoids and k-mode.

  9. Fat segmentation on chest CT images via fuzzy models

    Science.gov (United States)

    Tong, Yubing; Udupa, Jayaram K.; Wu, Caiyun; Pednekar, Gargi; Subramanian, Janani Rajan; Lederer, David J.; Christie, Jason; Torigian, Drew A.

    2016-03-01

    Quantification of fat throughout the body is vital for the study of many diseases. In the thorax, it is important for lung transplant candidates since obesity and being underweight are contraindications to lung transplantation given their associations with increased mortality. Common approaches for thoracic fat segmentation are all interactive in nature, requiring significant manual effort to draw the interfaces between fat and muscle with low efficiency and questionable repeatability. The goal of this paper is to explore a practical way for the segmentation of subcutaneous adipose tissue (SAT) and visceral adipose tissue (VAT) components of chest fat based on a recently developed body-wide automatic anatomy recognition (AAR) methodology. The AAR approach involves 3 main steps: building a fuzzy anatomy model of the body region involving all its major representative objects, recognizing objects in any given test image, and delineating the objects. We made several modifications to these steps to develop an effective solution to delineate SAT/VAT components of fat. Two new objects representing interfaces of SAT and VAT regions with other tissues, SatIn and VatIn are defined, rather than using directly the SAT and VAT components as objects for constructing the models. A hierarchical arrangement of these new and other reference objects is built to facilitate their recognition in the hierarchical order. Subsequently, accurate delineations of the SAT/VAT components are derived from these objects. Unenhanced CT images from 40 lung transplant candidates were utilized in experimentally evaluating this new strategy. Mean object location error achieved was about 2 voxels and delineation error in terms of false positive and false negative volume fractions were, respectively, 0.07 and 0.1 for SAT and 0.04 and 0.2 for VAT.

  10. Segmentation and Content-Based Watermarking for Color Image and Image Region Indexing and Retrieval

    OpenAIRE

    Mezaris Vasileios; Strintzis Michael G; Boulgouris Nikolaos V; Kompatsiaris Ioannis; Simitopoulos Dimitrios

    2002-01-01

    In this paper, an entirely novel approach to image indexing is presented using content-based watermarking. The proposed system uses color image segmentation and watermarking in order to facilitate content-based indexing, retrieval and manipulation of digital images and image regions. A novel segmentation algorithm is applied on reduced images and the resulting segmentation mask is embedded in the image using watermarking techniques. In each region of the image, indexing information is additi...

  11. Automatic lumbar vertebra segmentation from clinical CT for wedge compression fracture diagnosis

    Science.gov (United States)

    Ghosh, Subarna; Alomari, Raja'S.; Chaudhary, Vipin; Dhillon, Gurmeet

    2011-03-01

    Lumbar vertebral fractures vary greatly in types and causes and usually result from severe trauma or pathological conditions such as osteoporosis. Lumbar wedge compression fractures are amongst the most common ones where the vertebra is severely compressed forming a wedge shape and causing pain and pressure on the nerve roots and the spine. Since vertebral segmentation is the first step in any automated diagnosis task, we present a fully automated method for robustly localizing and segmenting the vertebrae for preparation of vertebral fracture diagnosis. Our segmentation method consists of five main steps towards the CAD(Computer-Aided Diagnosis) system: 1) Localization of the intervertebral discs. 2) Localization of the vertebral skeleton. 3) Segmentation of the individual vertebra. 4) Detection of the vertebrae center line and 5) Detection of the vertebrae major boundary points. Our segmentation results are promising with an average error of 1.5mm (modified Hausdorff distance metric) on 50 clinical CT cases i.e. a total of 250 lumbar vertebrae. We also present promising preliminary results for automatic wedge compression fracture diagnosis on 15 cases, 7 of which have one or more vertebral compression fracture, and obtain an accuracy of 97.33%.

  12. Automatic quantification of mammary glands on non-contrast x-ray CT by using a novel segmentation approach

    Science.gov (United States)

    Zhou, Xiangrong; Kano, Takuya; Cai, Yunliang; Li, Shuo; Zhou, Xinxin; Hara, Takeshi; Yokoyama, Ryujiro; Fujita, Hiroshi

    2016-03-01

    This paper describes a brand new automatic segmentation method for quantifying volume and density of mammary gland regions on non-contrast CT images. The proposed method uses two processing steps: (1) breast region localization, and (2) breast region decomposition to accomplish a robust mammary gland segmentation task on CT images. The first step detects two minimum bounding boxes of left and right breast regions, respectively, based on a machine-learning approach that adapts to a large variance of the breast appearances on different age levels. The second step divides the whole breast region in each side into mammary gland, fat tissue, and other regions by using spectral clustering technique that focuses on intra-region similarities of each patient and aims to overcome the image variance caused by different scan-parameters. The whole approach is designed as a simple structure with very minimum number of parameters to gain a superior robustness and computational efficiency for real clinical setting. We applied this approach to a dataset of 300 CT scans, which are sampled with the equal number from 30 to 50 years-old-women. Comparing to human annotations, the proposed approach can measure volume and quantify distributions of the CT numbers of mammary gland regions successfully. The experimental results demonstrated that the proposed approach achieves results consistent with manual annotations. Through our proposed framework, an efficient and effective low cost clinical screening scheme may be easily implemented to predict breast cancer risk, especially on those already acquired scans.

  13. Analysis of image thresholding segmentation algorithms based on swarm intelligence

    Science.gov (United States)

    Zhang, Yi; Lu, Kai; Gao, Yinghui; Yang, Bo

    2013-03-01

    Swarm intelligence-based image thresholding segmentation algorithms are playing an important role in the research field of image segmentation. In this paper, we briefly introduce the theories of four existing image segmentation algorithms based on swarm intelligence including fish swarm algorithm, artificial bee colony, bacteria foraging algorithm and particle swarm optimization. Then some image benchmarks are tested in order to show the differences of the segmentation accuracy, time consumption, convergence and robustness for Salt & Pepper noise and Gaussian noise of these four algorithms. Through these comparisons, this paper gives qualitative analyses for the performance variance of the four algorithms. The conclusions in this paper would give a significant guide for the actual image segmentation.

  14. ENHANCED GRAPH BASED NORMALIZED CUT METHODS FOR IMAGE SEGMENTATION

    Directory of Open Access Journals (Sweden)

    S.D. Kapade

    2014-11-01

    Full Text Available Image segmentation is one of the important steps in digital image processing. Several algorithms are available for segmenting the images, posing many challenges such as precise criteria and efficient computations. Most of the graph based methods used for segmentation depend on local properties of graphs without considering global impressions of image, which ultimately limits segmentation quality. In this paper, we propose an enhanced graph based normalized cut method for extracting global impression and consistencies in the image. We propose a technique to add flexibility to original recursive normalized two way cut method which was further extended to other graph based methods. The results show that the proposed technique improves segmentation quality as well as requires lesser computational time than the regular normalized cut method.

  15. Segmentation of Natural Images by Texture and Boundary Compression

    CERN Document Server

    Mobahi, Hossein; Yang, Allen Y; Sastry, Shankar S; Ma, Yi

    2010-01-01

    We present a novel algorithm for segmentation of natural images that harnesses the principle of minimum description length (MDL). Our method is based on observations that a homogeneously textured region of a natural image can be well modeled by a Gaussian distribution and the region boundary can be effectively coded by an adaptive chain code. The optimal segmentation of an image is the one that gives the shortest coding length for encoding all textures and boundaries in the image, and is obtained via an agglomerative clustering process applied to a hierarchy of decreasing window sizes as multi-scale texture features. The optimal segmentation also provides an accurate estimate of the overall coding length and hence the true entropy of the image. We test our algorithm on the publicly available Berkeley Segmentation Dataset. It achieves state-of-the-art segmentation results compared to other existing methods.

  16. Flotation bubble image segmentation based on seed region boundary growing

    Institute of Scientific and Technical Information of China (English)

    Zhang Guoying; Zhu Hong; Xu Ning

    2011-01-01

    Segmenting blurred and conglutinated bubbles in a flotation image is done using a new segmentation method based on Seed Region and Boundary Growing (SRBG). Bright pixels located on bubble tops were extracted as the seed regions. Seed boundaries are divided into four curves: left-top, right-top, rightbottom, and left-bottom. Bubbles are segmented from the seed boundary by moving these curves to the bubble boundaries along the corresponding directions. The SRBG method can remove noisy areas and it avoids over- and under-segmentation problems. Each bubble is segmented separately rather than segmenting the entire flotation image. The segmentation results from the SRBG method are more accurate than those from the Watershed algorithm.

  17. Vessel Segmentation in Medical Imaging Using a Tight-Frame Based Algorithm

    CERN Document Server

    Cai, Xiaohao; Morigi, Serena; Sgallari, Fiorella

    2011-01-01

    Tight-frame, a generalization of orthogonal wavelets, has been used successfully in various problems in image processing, including inpainting, impulse noise removal, super-resolution image restoration, etc. Segmentation is the process of identifying object outlines within images. There are quite a few efficient algorithms for segmentation that depend on the variational approach and the partial differential equation (PDE) modeling. In this paper, we propose to apply the tight-frame approach to automatically identify tube-like structures such as blood vessels in Magnetic Resonance Angiography (MRA) images. Our method iteratively refines a region that encloses the possible boundary or surface of the vessels. In each iteration, we apply the tight-frame algorithm to denoise and smooth the possible boundary and sharpen the region. We prove the convergence of our algorithm. Numerical experiments on real 2D/3D MRA images demonstrate that our method is very efficient with convergence usually within a few iterations, ...

  18. Dental x-ray image segmentation

    Science.gov (United States)

    Said, Eyad; Fahmy, Gamal F.; Nassar, Diaa; Ammar, Hany

    2004-08-01

    Law enforcement agencies have been exploiting biometric identifiers for decades as key tools in forensic identification. With the evolution in information technology and the huge volume of cases that need to be investigated by forensic specialists, it has become important to automate forensic identification systems. While, ante mortem (AM) identification, that is identification prior to death, is usually possible through comparison of many biometric identifiers, postmortem (PM) identification, that is identification after death, is impossible using behavioral biometrics (e.g. speech, gait). Moreover, under severe circumstances, such as those encountered in mass disasters (e.g. airplane crashers) or if identification is being attempted more than a couple of weeks postmortem, under such circumstances, most physiological biometrics may not be employed for identification, because of the decay of soft tissues of the body to unidentifiable states. Therefore, a postmortem biometric identifier has to resist the early decay that affects body tissues. Because of their survivability and diversity, the best candidates for postmortem biometric identification are the dental features. In this paper we present an over view about an automated dental identification system for Missing and Unidentified Persons. This dental identification system can be used by both law enforcement and security agencies in both forensic and biometric identification. We will also present techniques for dental segmentation of X-ray images. These techniques address the problem of identifying each individual tooth and how the contours of each tooth are extracted.

  19. Automatic Segmentation of Raw LIDAR Data for Extraction of Building Roofs

    Directory of Open Access Journals (Sweden)

    Mohammad Awrangjeb

    2014-04-01

    Full Text Available Automatic extraction of building roofs from remote sensing data is important for many applications, including 3D city modeling. This paper proposes a new method for automatic segmentation of raw LIDAR (light detection and ranging data. Using the ground height from a DEM (digital elevation model, the raw LIDAR points are separated into two groups. The first group contains the ground points that form a “building mask”. The second group contains non-ground points that are clustered using the building mask. A cluster of points usually represents an individual building or tree. During segmentation, the planar roof segments are extracted from each cluster of points and refined using rules, such as the coplanarity of points and their locality. Planes on trees are removed using information, such as area and point height difference. Experimental results on nine areas of six different data sets show that the proposed method can successfully remove vegetation and, so, offers a high success rate for building detection (about 90% correctness and completeness and roof plane extraction (about 80% correctness and completeness, when LIDAR point density is as low as four points/m2. Thus, the proposed method can be exploited in various applications.

  20. Building an Image-Based System to automatically Score psoriasis

    DEFF Research Database (Denmark)

    G{'o}mez, D. Delgado; Carstensen, Jens Michael; Ersbøll, Bjarne Kjær

    2003-01-01

    images. The system is tested on patients with the dermatological disease psoriasis. Temporal series of images are taken for each patient and the lesions are automatically extracted. Results indicate that to the images obtained are a good source for obtaining derived variables to track the lesion....