Shape: automatic conformation prediction of carbohydrates using a genetic algorithm
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Rosen Jimmy
2009-09-01
Full Text Available Abstract Background Detailed experimental three dimensional structures of carbohydrates are often difficult to acquire. Molecular modelling and computational conformation prediction are therefore commonly used tools for three dimensional structure studies. Modelling procedures generally require significant training and computing resources, which is often impractical for most experimental chemists and biologists. Shape has been developed to improve the availability of modelling in this field. Results The Shape software package has been developed for simplicity of use and conformation prediction performance. A trivial user interface coupled to an efficient genetic algorithm conformation search makes it a powerful tool for automated modelling. Carbohydrates up to a few hundred atoms in size can be investigated on common computer hardware. It has been shown to perform well for the prediction of over four hundred bioactive oligosaccharides, as well as compare favourably with previously published studies on carbohydrate conformation prediction. Conclusion The Shape fully automated conformation prediction can be used by scientists who lack significant modelling training, and performs well on computing hardware such as laptops and desktops. It can also be deployed on computer clusters for increased capacity. The prediction accuracy under the default settings is good, as it agrees well with experimental data and previously published conformation prediction studies. This software is available both as open source and under commercial licenses.
Automatically predicting mood from expressed emotions
Katsimerou, C.
2016-01-01
Affect-adaptive systems have the potential to assist users that experience systematically negative moods. This thesis aims at building a platform for predicting automatically a person’s mood from his/her visual expressions. The key word is mood, namely a relatively long-term, stable and diffused aff
Automatically predicting mood from expressed emotions
Katsimerou, C.
2016-01-01
Affect-adaptive systems have the potential to assist users that experience systematically negative moods. This thesis aims at building a platform for predicting automatically a person’s mood from his/her visual expressions. The key word is mood, namely a relatively long-term, stable and diffused affective state, as opposed to the short-term, volatile and intense emotion. This is emphasized, because mood and emotion often tend to be used as synonyms. However, since their differences are well e...
Automatic workflow for the classification of local DNA conformations
Czech Academy of Sciences Publication Activity Database
Čech, P.; Kukal, J.; Černý, Jiří; Schneider, Bohdan; Svozil, D.
2013-01-01
Roč. 14, č. 205 (2013). ISSN 1471-2105 R&D Projects: GA ČR GAP305/12/1801 Institutional research plan: CEZ:AV0Z50520701 Keywords : DNA * Dinucleotide conformation * Classification * Machine learning * Neural network * k-NN * Cluster analysis Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.672, year: 2013
Prediction of PARP Inhibition with Proteochemometric Modelling and Conformal Prediction.
Cortés-Ciriano, Isidro; Bender, Andreas; Malliavin, Thérèse
2015-06-01
Poly(ADP-ribose) polymerases (PARPs) play a key role in DNA damage repair. PARP inhibitors act as chemo- and radio- sensitizers and thus potentiate the cytotoxicity of DNA damaging agents. Although PARP inhibitors are currently investigated as chemotherapeutic agents, their cross-reactivity with other members of the PARP family remains unclear. Here, we apply Proteochemometric Modelling (PCM) to model the activity of 181 compounds on 12 human PARPs. We demonstrate that PCM (R0 (2) test =0.65-0.69; RMSEtest =0.95-1.01 °C) displays higher performance on the test set (interpolation) than Family QSAR and Family QSAM (Tukey's HSD, α 0.05), and outperforms Inductive Transfer knowledge among targets (Tukey's HSD, α 0.05). We benchmark the predictive signal of 8 amino acid and 11 full-protein sequence descriptors, obtaining that all of them (except for SOCN) perform at the same level of statistical significance (Tukey's HSD, α 0.05). The extrapolation power of PCM to new compounds (RMSE=1.02±0.80 °C) and targets (RMSE=1.03±0.50 °C) is comparable to interpolation, although the extrapolation ability is not uniform across the chemical and the target space. For this reason, we also provide confidence intervals calculated with conformal prediction. In addition, we present the R package conformal, which permits the calculation of confidence intervals for regression and classification caret models. PMID:27490382
Conformal prediction for reliable machine learning theory, adaptations and applications
Balasubramanian, Vineeth; Vovk, Vladimir
2014-01-01
The conformal predictions framework is a recent development in machine learning that can associate a reliable measure of confidence with a prediction in any real-world pattern recognition application, including risk-sensitive applications such as medical diagnosis, face recognition, and financial risk prediction. Conformal Predictions for Reliable Machine Learning: Theory, Adaptations and Applications captures the basic theory of the framework, demonstrates how to apply it to real-world problems, and presents several adaptations, including active learning, change detection, and anomaly detecti
Do judgments of learning predict automatic influences of memory?
Undorf, Monika; Böhm, Simon; Cüpper, Lutz
2016-06-01
Current memory theories generally assume that memory performance reflects both recollection and automatic influences of memory. Research on people's predictions about the likelihood of remembering recently studied information on a memory test, that is, on judgments of learning (JOLs), suggests that both magnitude and resolution of JOLs are linked to recollection. However, it has remained unresolved whether JOLs are also predictive of automatic influences of memory. This issue was addressed in 3 experiments. Using the process-dissociation procedure, we assessed the predictive accuracy of immediate and delayed JOLs (Experiment 1) and of immediate JOLs from a first and from a second study-test cycle (Experiments 2 and 3) for recollection and automatic influences. Results showed that each type of JOLs was predictive of both recollection and automatic influences. Moreover, we found that a delay between study and JOL improved the predictive accuracy of JOLs for recollection, while study-test experience improved the predictive accuracy of JOLs for both recollection and automatic influences. These findings demonstrate that JOLs predict not only recollection, but also automatic influences of memory. (PsycINFO Database Record PMID:26595068
Predicting protein ligand binding motions with the conformation explorer
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Flores Samuel C
2011-10-01
Full Text Available Abstract Background Knowledge of the structure of proteins bound to known or potential ligands is crucial for biological understanding and drug design. Often the 3D structure of the protein is available in some conformation, but binding the ligand of interest may involve a large scale conformational change which is difficult to predict with existing methods. Results We describe how to generate ligand binding conformations of proteins that move by hinge bending, the largest class of motions. First, we predict the location of the hinge between domains. Second, we apply an Euler rotation to one of the domains about the hinge point. Third, we compute a short-time dynamical trajectory using Molecular Dynamics to equilibrate the protein and ligand and correct unnatural atomic positions. Fourth, we score the generated structures using a novel fitness function which favors closed or holo structures. By iterating the second through fourth steps we systematically minimize the fitness function, thus predicting the conformational change required for small ligand binding for five well studied proteins. Conclusions We demonstrate that the method in most cases successfully predicts the holo conformation given only an apo structure.
Addressing the Role of Conformational Diversity in Protein Structure Prediction
Parisi, Gustavo; Fornasari, Maria Silvina
2016-01-01
Computational modeling of tertiary structures has become of standard use to study proteins that lack experimental characterization. Unfortunately, 3D structure prediction methods and model quality assessment programs often overlook that an ensemble of conformers in equilibrium populates the native state of proteins. In this work we collected sets of publicly available protein models and the corresponding target structures experimentally solved and studied how they describe the conformational diversity of the protein. For each protein, we assessed the quality of the models against known conformers by several standard measures and identified those models ranked best. We found that model rankings are defined by both the selected target conformer and the similarity measure used. 70% of the proteins in our datasets show that different models are structurally closest to different conformers of the same protein target. We observed that model building protocols such as template-based or ab initio approaches describe in similar ways the conformational diversity of the protein, although for template-based methods this description may depend on the sequence similarity between target and template sequences. Taken together, our results support the idea that protein structure modeling could help to identify members of the native ensemble, highlight the importance of considering conformational diversity in protein 3D quality evaluations and endorse the study of the variability of the native structure for a meaningful biological analysis. PMID:27159429
Prediction of Protein Secondary Structures From Conformational Biases
Hoang, Trinh Xuan; Cieplak, Marek; Banavar, Jayanth R.; Maritan, Amos
2002-01-01
We use LINUS, a procedure developed by Srinivasan and Rose, to provide a physical interpretation of and to predict the secondary structures of proteins. The secondary structure type at a given site is identified by the largest conformational bias during short time simulations. We examine the rate of successful prediction as a function of temperature and the interaction window. At high temperatures, there is a large propensity for the establishment of $\\beta$-strands whereas $\\alpha$-helices a...
Nonlinear model predictive control using automatic differentiation
Al Seyab, Rihab Khalid Shakir
2006-01-01
Although nonlinear model predictive control (NMPC) might be the best choice for a nonlinear plant, it is still not widely used. This is mainly due to the computational burden associated with solving online a set of nonlinear differential equations and a nonlinear dynamic optimization problem in real time. This thesis is concerned with strategies aimed at reducing the computational burden involved in different stages of the NMPC such as optimization problem, state estimation, an...
Effective protein conformational sampling based on predicted torsion angles.
Yang, Yuedong; Zhou, Yaoqi
2016-04-30
Protein structure prediction is a long-standing problem in molecular biology. Due to lack of an accurate energy function, it is often difficult to know whether the sampling algorithm or the energy function is the most important factor for failure of locating near-native conformations of proteins. This article examines the size dependence of sampling effectiveness by using a perfect "energy function": the root-mean-squared distance from the target native structure. Using protein targets up to 460 residues from critical assessment of structure prediction techniques (CASP11, 2014), we show that the accuracy of near native structures sampled is relatively independent of protein sizes but strongly depends on the errors of predicted torsion angles. Even with 40% out-of-range angle prediction, 2 Å or less near-native conformation can be sampled. The result supports that the poor energy function is one of the bottlenecks of structure prediction and predicted torsion angles are useful for overcoming the bottleneck by restricting the sampling space in the absence of a perfect energy function. © 2015 Wiley Periodicals, Inc. PMID:26696379
Dancette, S.; Browet, A.; Martin, G.; Willemet, M.; Delannay, L.
2016-06-01
A new procedure for microstructure-based finite element modeling of polycrystalline aggregates is presented. The proposed method relies (i) on an efficient graph-based community detection algorithm for crystallographic data segmentation and feature contour extraction and (ii) on the generation of selectively refined meshes conforming to grain boundaries. It constitutes a versatile and close to automatic environment for meshing complex microstructures. The procedure is illustrated with polycrystal microstructures characterized by orientation imaging microscopy. Hot deformation of a Duplex stainless steel is investigated based on ex-situ EBSD measurements performed on the same region of interest before and after deformation. A finite element mesh representing the initial microstructure is generated and then used in a crystal plasticity simulation of the plane strain compression. Simulation results and experiments are in relatively good agreement, confirming a large potential for such directly coupled experimental and modeling analyses, which is facilitated by the present image-based meshing procedure.
International Nuclear Information System (INIS)
Aim. Implementation and validation of an automatic registration method based on mutual information (MI) for the integration of thoracic and abdominal positron emission tomography (PET)/computed tomography (CT) studies, with the purpose to facilitate in a clinical context the inclusion of PET metabolic information in conformal radiotherapy (RT). Methods. Registration was obtained by modeling a rigid spatial transformation between CT and PET transmission studies. The registration method was based on Normalized Mutual Information (NMI), by iteratively transforming the PET volume, until its optimal alignment to the CT study is achieved, in correspondence of the maximum of NMI. To avoid entrapment in Iocal maxima and to improve convergence speed we introduced a multi resolution scheme. Accuracy of the proposed approach was investigated in experimental data, relative to phantom and patient studies, acquired in conditions similar to clinical situations. Results. In phantom studies the mean error in the 3D space is 3.6 mm (range 3-4 mm) in thoracic region and 3.2 mm (range 2.9-3.7 mm) in abdominal region, considerably Iess than PET spatial resolution. In patient studies the spatial mean error increases with respect to phantom studies (5.4 mm and 5.2 mm for thorax and abdomen, respectively) but remains comparable to the PET spatial resolution. The accuracy of spatial realignment was thus found adequate for the registration of PET/CT registration, if good patient repositioning was adopted. Conclusion. The proposed registration method, based on MI, was validated for the integration of PET/CT studies of patients candidate for thoracic and abdominal conformaI RT. The method is automatic and provided with a user interface, thus suitable for clinical use
Titration procedures for nasal CPAP: Automatic CPAP or prediction formula?
HERTEGONNE, KATRIEN; Volna, J.; Portier, Sofie; De Pauw, Rebecca; Van Maele, Georges; Pevernagie, Dirk
2008-01-01
Background: The best method for titration Of continuous positive airway pressure (CPAP) therapy in obstructive sleep apnea (OSA) syndrome has not yet been established. The 90th or 95th percentiles of the pressure titrated over time by automatic CPAP (A-CPAP) have been recommended as reference for prescribing therapeutic fixed CPAP (F-CPAP). We compared A-CPAP to F-CPAP. which was determined by a common prediction formula. Methods: Forty-five patients who were habituated to F-CPAP underwent...
Sheong, Fu Kit; Silva, Daniel-Adriano; Meng, Luming; Zhao, Yutong; Huang, Xuhui
2015-01-13
The conformational dynamics of multibody systems plays crucial roles in many important problems. Markov state models (MSMs) are powerful kinetic network models that can predict long-time-scale dynamics using many short molecular dynamics simulations. Although MSMs have been successfully applied to conformational changes of individual proteins, the analysis of multibody systems is still a challenge because of the complexity of the dynamics that occur on a mixture of drastically different time scales. In this work, we have developed a new algorithm, automatic state partitioning for multibody systems (APM), for constructing MSMs to elucidate the conformational dynamics of multibody systems. The APM algorithm effectively addresses different time scales in the multibody systems by directly incorporating dynamics into geometric clustering when identifying the metastable conformational states. We have applied the APM algorithm to a 2D potential that can mimic a protein-ligand binding system and the aggregation of two hydrophobic particles in water and have shown that it can yield tremendous enhancements in the computational efficiency of MSM construction and the accuracy of the models. PMID:26574199
Automatic prediction of facial trait judgments: appearance vs. structural models.
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Mario Rojas
Full Text Available Evaluating other individuals with respect to personality characteristics plays a crucial role in human relations and it is the focus of attention for research in diverse fields such as psychology and interactive computer systems. In psychology, face perception has been recognized as a key component of this evaluation system. Multiple studies suggest that observers use face information to infer personality characteristics. Interactive computer systems are trying to take advantage of these findings and apply them to increase the natural aspect of interaction and to improve the performance of interactive computer systems. Here, we experimentally test whether the automatic prediction of facial trait judgments (e.g. dominance can be made by using the full appearance information of the face and whether a reduced representation of its structure is sufficient. We evaluate two separate approaches: a holistic representation model using the facial appearance information and a structural model constructed from the relations among facial salient points. State of the art machine learning methods are applied to a derive a facial trait judgment model from training data and b predict a facial trait value for any face. Furthermore, we address the issue of whether there are specific structural relations among facial points that predict perception of facial traits. Experimental results over a set of labeled data (9 different trait evaluations and classification rules (4 rules suggest that a prediction of perception of facial traits is learnable by both holistic and structural approaches; b the most reliable prediction of facial trait judgments is obtained by certain type of holistic descriptions of the face appearance; and c for some traits such as attractiveness and extroversion, there are relationships between specific structural features and social perceptions.
Does human presynaptic striatal dopamine function predict social conformity?
Stokes, Paul; Benecke, Aaf; Puraite, Julita; Bloomfield, Michael Ap; Shotbolt, Paul; Reeves, Suzanne; Lingford-Hughes, Anne R.; Howes, Oliver; Egerton, Alice
2014-01-01
Socially desirable responding (SDR) is a personality trait which reflects either a tendency to present oneself in an overly positive manner to others, consistent with social conformity (impression management (IM)), or the tendency to view one's own behaviour in an overly positive light (self-deceptive enhancement (SDE)). Neurochemical imaging studies report an inverse relationship between SDR and dorsal striatal dopamine D2/3 receptor availability. This may reflect an association between SDR ...
Prediction of ROA and ECD Related to Conformational Changes of Astaxanthin Enantiomers.
Zajac, Grzegorz; Kaczor, Agnieszka; Buda, Szymon; Młynarski, Jacek; Frelek, Jadwiga; Dobrowolski, Jan Cz; Baranska, Małgorzata
2015-09-17
ECD, ROA, and VCD were used to characterize astaxanthin conformers that differ in their arrangements of the β-ionone ring in respect to the chain. We obtained ECD spectra experimentally, and the ECD, ROA, and VCD spectra of both individual conformers and conformation-averaged mixtures were predicted using quantum-chemical calculations at the CAM-B3LYP level of theory using the PCM solvation model. The chiroptical methods employed (particularly ECD and ROA) were considerably more sensitive to conformational changes of astaxanthin compared to "mono-signed" conventional Raman spectroscopy. Strikingly, conformers that are the same optical isomers (e.g., of 3S,3'S-astxanthin), while geometrically nearly mirror images, exhibited sign-inversed ECD and ROA spectra. The conformational sensitivity of these chiroptical methods makes them a promising tool in the study of carotenoids in the natural environment (for instance, in de novo algal or yeast astaxanthin sources). PMID:26305416
Aires-de-Sousa, João; Gasteiger, Johann
2002-03-01
In order to process molecular chirality by computational methods and to obtain predictions for properties that are influenced by chirality, a fixed-length conformation-dependent chirality code is introduced. The code consists of a set of molecular descriptors representing the chirality of a 3D molecular structure. It includes information about molecular geometry and atomic properties, and can distinguish between enantiomers, even if chirality does not result from chiral centers. The new molecular transform was applied to two datasets of chiral compounds, each of them containing pairs of enantiomers that had been separated by chiral chromatography. The elution order within each pair of isomers was predicted by means of Kohonen neural networks (NN) using the chirality codes as input. A previously described conformation-independent chirality code was also applied and the results were compared. In both applications clustering of the two classes of enantiomers (first eluted and last eluted enantiomers) could be successfully achieved by NN and accurate predictions could be obtained for independent test sets. The chirality code described here has a potential for a broad range of applications from stereoselective reactions to analytical chemistry and to the study of biological activity of chiral compounds. PMID:11885960
Jain, Ajay N.
2009-01-01
Computational methods for docking ligands have been shown to be remarkably dependent on precise protein conformation, where acceptable results in pose prediction have been generally possible only in the artificial case of re-docking a ligand into a protein binding site whose conformation was determined in the presence of the same ligand (the “cognate” docking problem). In such cases, on well curated protein/ligand complexes, accurate dockings can be returned as top-scoring over 75% of the tim...
Lynx: Automatic Elderly Behavior Prediction in Home Telecare
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Jose Manuel Lopez-Guede
2015-01-01
Full Text Available This paper introduces Lynx, an intelligent system for personal safety at home environments, oriented to elderly people living independently, which encompasses a decision support machine for automatic home risk prevention, tested in real-life environments to respond to real time situations. The automatic system described in this paper prevents such risks by an advanced analytic methods supported by an expert knowledge system. It is minimally intrusive, using plug-and-play sensors and machine learning algorithms to learn the elder’s daily activity taking into account even his health records. If the system detects that something unusual happens (in a wide sense or if something is wrong relative to the user’s health habits or medical recommendations, it sends at real-time alarm to the family, care center, or medical agents, without human intervention. The system feeds on information from sensors deployed in the home and knowledge of subject physical activities, which can be collected by mobile applications and enriched by personalized health information from clinical reports encoded in the system. The system usability and reliability have been tested in real-life conditions, with an accuracy larger than 81%.
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Dimitris Nikoloudis
2014-07-01
Full Text Available The accurate prediction of the conformation of Complementarity-Determining Regions (CDRs is important in modelling antibodies for protein engineering applications. Specifically, the Canonical paradigm has proved successful in predicting the CDR conformation in antibody variable regions. It relies on canonical templates which detail allowed residues at key positions in the variable region framework or in the CDR itself for 5 of the 6 CDRs. While no templates have as yet been defined for the hypervariable CDR-H3, instead, reliable sequence rules have been devised for predicting the base of the CDR-H3 loop. Here a new method termed Disjoint Combinations Profiling (DCP is presented, which contributes a considerable advance in the prediction of CDR conformations. This novel method is explained and compared with canonical templates and sequence rules in a 3-way blind prediction. DCP achieved 93% accuracy over 951 blind predictions and showed an improvement in cumulative accuracy compared to predictions with canonical templates or sequence rules. In addition to its overall improvement in prediction accuracy, it is suggested that DCP is open to better implementations in the future and that it can improve as more antibody structures are deposited in the databank. In contrast, it is argued that canonical templates and sequence rules may have reached their peak.
Nikoloudis, Dimitris; Pitts, Jim E; Saldanha, José W
2014-01-01
The accurate prediction of the conformation of Complementarity-Determining Regions (CDRs) is important in modelling antibodies for protein engineering applications. Specifically, the Canonical paradigm has proved successful in predicting the CDR conformation in antibody variable regions. It relies on canonical templates which detail allowed residues at key positions in the variable region framework or in the CDR itself for 5 of the 6 CDRs. While no templates have as yet been defined for the hypervariable CDR-H3, instead, reliable sequence rules have been devised for predicting the base of the CDR-H3 loop. Here a new method termed Disjoint Combinations Profiling (DCP) is presented, which contributes a considerable advance in the prediction of CDR conformations. This novel method is explained and compared with canonical templates and sequence rules in a 3-way blind prediction. DCP achieved 93% accuracy over 951 blind predictions and showed an improvement in cumulative accuracy compared to predictions with canonical templates or sequence rules. In addition to its overall improvement in prediction accuracy, it is suggested that DCP is open to better implementations in the future and that it can improve as more antibody structures are deposited in the databank. In contrast, it is argued that canonical templates and sequence rules may have reached their peak. PMID:25071985
The conformational signature of β-arrestin2 predicts its trafficking and signalling functions.
Lee, Mi-Hye; Appleton, Kathryn M; Strungs, Erik G; Kwon, Joshua Y; Morinelli, Thomas A; Peterson, Yuri K; Laporte, Stephane A; Luttrell, Louis M
2016-03-31
Arrestins are cytosolic proteins that regulate G-protein-coupled receptor (GPCR) desensitization, internalization, trafficking and signalling. Arrestin recruitment uncouples GPCRs from heterotrimeric G proteins, and targets the proteins for internalization via clathrin-coated pits. Arrestins also function as ligand-regulated scaffolds that recruit multiple non-G-protein effectors into GPCR-based 'signalsomes'. Although the dominant function(s) of arrestins vary between receptors, the mechanism whereby different GPCRs specify these divergent functions is unclear. Using a panel of intramolecular fluorescein arsenical hairpin (FlAsH) bioluminescence resonance energy transfer (BRET) reporters to monitor conformational changes in β-arrestin2, here we show that GPCRs impose distinctive arrestin 'conformational signatures' that reflect the stability of the receptor-arrestin complex and role of β-arrestin2 in activating or dampening downstream signalling events. The predictive value of these signatures extends to structurally distinct ligands activating the same GPCR, such that the innate properties of the ligand are reflected as changes in β-arrestin2 conformation. Our findings demonstrate that information about ligand-receptor conformation is encoded within the population average β-arrestin2 conformation, and provide insight into how different GPCRs can use a common effector for different purposes. This approach may have application in the characterization and development of functionally selective GPCR ligands and in identifying factors that dictate arrestin conformation and function. PMID:27007854
Learned predictiveness influences automatic evaluations in human contingency learning
Le Pelley, M. E.; Calvini, G.; Spears, R.
2013-01-01
Experiments used an affective priming procedure to investigate whether evaluative conditioning in humans is subject to bias as a consequence of differences in the learned predictiveness of the cues involved. Experiment 1, using brief prime presentation, demonstrated stronger affective priming for cu
Conformal Invariance Predictions for the Three-Dimensional Self-Avoiding Walk
Kennedy, Tom
2015-03-01
If the three dimensional self-avoiding walk (SAW) is conformally invariant, then one can compute the hitting densities for the SAW in a half-space and in a sphere (Kennedy in Phys Rev Lett 111: 165703, 2013). The ensembles of SAW's used to define these hitting densities involve walks of arbitrary lengths, and so these ensembles cannot be directly studied by the pivot Monte Carlo algorithm for the SAW. We show that these mixed length ensembles should have the same scaling limit as certain weighted ensembles that only involve walks with a single length, thus providing a fast method for simulating these ensembles. Preliminary simulations which found good agreement between the predictions and Monte Carlo simulations for the SAW were reported in Kennedy (Phys Rev Lett 111: 165703, 2013). In this paper we present more accurate simulations testing the predictions and find even stronger support for the prediction that the SAW is conformally invariant in three dimensions.
Predicting most probable conformations of a given peptide sequence in the random coil state.
Bayrak, Cigdem Sevim; Erman, Burak
2012-11-01
In this work, we present a computational scheme for finding high probability conformations of peptides. The scheme calculates the probability of a given conformation of the given peptide sequence using the probability distribution of torsion states. Dependence of the states of a residue on the states of its first neighbors along the chain is considered. Prior probabilities of torsion states are obtained from a coil library. Posterior probabilities are calculated by the matrix multiplication Rotational Isomeric States Model of polymer theory. The conformation of a peptide with highest probability is determined by using a hidden Markov model Viterbi algorithm. First, the probability distribution of the torsion states of the residues is obtained. Using the highest probability torsion state, one can generate, step by step, states with lower probabilities. To validate the method, the highest probability state of residues in a given sequence is calculated and compared with probabilities obtained from the Coil Databank. Predictions based on the method are 32% better than predictions based on the most probable states of residues. The ensemble of "n" high probability conformations of a given protein is also determined using the Viterbi algorithm with multistep backtracking. PMID:22955874
Automatic feature template generation for maximum entropy based intonational phrase break prediction
Zhou, You
2013-03-01
The prediction of intonational phrase (IP) breaks is important for both the naturalness and intelligibility of Text-to- Speech (TTS) systems. In this paper, we propose a maximum entropy (ME) model to predict IP breaks from unrestricted text, and evaluate various keyword selection approaches in different domains. Furthermore, we design a hierarchical clustering algorithm for automatic generation of feature templates, which minimizes the need for human supervision during ME model training. Results of comparative experiments show that, for the task of IP break prediction, ME model obviously outperforms classification and regression tree (CART), log-likelihood ratio is the best scoring measure of keyword selection, compared with manual templates, templates automatically generated by our approach greatly improves the F-score of ME based IP break prediction, and significantly reduces the size of ME model.
Melillo, Paolo; Izzo, Raffaele; Orrico, Ada; Scala, Paolo; Attanasio, Marcella; Mirra, Marco; De Luca, Nicola; Pecchia, Leandro
2015-01-01
Background There is consensus that Heart Rate Variability is associated with the risk of vascular events. However, Heart Rate Variability predictive value for vascular events is not completely clear. The aim of this study is to develop novel predictive models based on data-mining algorithms to provide an automatic risk stratification tool for hypertensive patients. Methods A database of 139 Holter recordings with clinical data of hypertensive patients followed up for at least 12 months were c...
Performance prediction of four-contact vertical Hall-devices using a conformal mapping technique
International Nuclear Information System (INIS)
Instead of the conventional design with five contacts in the sensor active area, innovative vertical Hall devices (VHDs) with four contacts and six contacts are asymmetrical in structural design but symmetrical in the current flow that can be well fit for the spinning current technique for offset elimination. In this article, a conformal mapping calculation method is used to predict the performance of asymmetrical VHD embedded in a deep n-well with four contacts. Furthermore, to make the calculation more accurate, the junction field effect is also involved into the conformal mapping method. The error between calculated and simulated results is less than 5% for the current-related sensitivity, and approximately 13% for the voltage-related sensitivity. This proves that such calculations can be used to predict the optimal structure of the vertical Hall-devices. (paper)
Park, So-Jung; Kufareva, Irina; Abagyan, Ruben
2010-01-01
Nuclear receptors (NRs) are ligand dependent transcriptional factors and play a key role in reproduction, development, and homeostasis of organism. NRs are potential targets for treatment of cancer and other diseases such as inflammatory diseases, and diabetes. In this study, we present a comprehensive library of pocket conformational ensembles of thirteen human nuclear receptors (NRs), and test the ability of these ensembles to recognize their ligands in virtual screening, as well as predict...
Assessment of Protein Side-Chain Conformation Prediction Methods in Different Residue Environments
Peterson, Lenna X.; Kang, Xuejiao; Kihara, Daisuke
2016-01-01
Computational prediction of side-chain conformation is an important component of protein structure prediction. Accurate side-chain prediction is crucial for practical applications of protein structure models that need atomic detailed resolution such as protein and ligand design. We evaluated the accuracy of eight side-chain prediction methods in reproducing the side-chain conformations of experimentally solved structures deposited to the Protein Data Bank. Prediction accuracy was evaluated for a total of four different structural environments (buried, surface, interface, and membrane-spanning) in three different protein types (monomeric, multimeric, and membrane). Overall, the highest accuracy was observed for buried residues in monomeric and multimeric proteins. Notably, side-chains at protein interfaces and membrane-spanning regions were better predicted than surface residues even though the methods did not all use multimeric and membrane proteins for training. Thus, we conclude that the current methods are as practically useful for modeling protein docking interfaces and membrane-spanning regions as for modeling monomers. PMID:24619909
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Naghmeh Poorinmohammad
2015-10-01
Full Text Available Background: The aim of this study was to generate in silico 3D-structure of the envelope protein of AHFV using homology modeling method to further predict its conformational epitopes and help other studies to investigate itsstructural features using the model.Methods: A 3D-structure prediction was developed for the envelope protein of Alkhumra haemorrhagic fever virus (AHFV, an emerging tick-borne flavivirus, based on a homology modeling method using M4T and Modwebservers, as the 3D-structure of the protein is not available yet. Modeled proteins were validated using Modfold 4 server and their accuracies were calculated based on their RSMDs. Having the 3D predicted model with high quality, conformational epitopes were predicted using DiscoTope 2.0.Results: Model generated by M4T was more acceptable than the Modweb-generated model. The global score and Pvalue calculated by Modfold 4 ensured that a certifiable model was generated by M4T, since its global score was almost near 1 which is the score for a high resolution X-ray crystallography structure. Furthermore, itsthe P-value was much lower than 0.001 which means that the model is completely acceptable. Having 0.46 Å rmsd, this model was shown to be highly accurate. Results from DiscoTope 2.0 showed 26 residues as epitopes, forming conformational epitopes of the modeled protein.Conclusion: The predicted model and epitopes for envelope protein of AHFV can be used in several therapeutic and diagnostic approaches including peptide vaccine development, structure based drug design or diagnostic kit development in order to facilitate the time consuming experimental epitope mapping process.
Switch region for pathogenic structural change in conformational disease and its prediction.
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Xin Liu
Full Text Available Many diseases are believed to be related to abnormal protein folding. In the first step of such pathogenic structural changes, misfolding occurs in regions important for the stability of the native structure. This destabilizes the normal protein conformation, while exposing the previously hidden aggregation-prone regions, leading to subsequent errors in the folding pathway. Sites involved in this first stage can be deemed switch regions of the protein, and can represent perfect binding targets for drugs to block the abnormal folding pathway and prevent pathogenic conformational changes. In this study, a prediction algorithm for the switch regions responsible for the start of pathogenic structural changes is introduced. With an accuracy of 94%, this algorithm can successfully find short segments covering sites significant in triggering conformational diseases (CDs and is the first that can predict switch regions for various CDs. To illustrate its effectiveness in dealing with urgent public health problems, the reason of the increased pathogenicity of H5N1 influenza virus is analyzed; the mechanisms of the pandemic swine-origin 2009 A(H1N1 influenza virus in overcoming species barriers and in infecting large number of potential patients are also suggested. It is shown that the algorithm is a potential tool useful in the study of the pathology of CDs because: (1 it can identify the origin of pathogenic structural conversion with high sensitivity and specificity, and (2 it provides an ideal target for clinical treatment.
Face Prediction Model for an Automatic Age-invariant Face Recognition System
Yadav, Poonam
2015-01-01
Automated face recognition and identification softwares are becoming part of our daily life; it finds its abode not only with Facebook's auto photo tagging, Apple's iPhoto, Google's Picasa, Microsoft's Kinect, but also in Homeland Security Department's dedicated biometric face detection systems. Most of these automatic face identification systems fail where the effects of aging come into the picture. Little work exists in the literature on the subject of face prediction that accounts for agin...
Sunnåker, Mikael; Zamora-Sillero, Elias; Dechant, Reinhard; Ludwig, Christina; Busetto, Alberto Giovanni; Wagner, Andreas; Stelling, Joerg
2013-01-01
Predictive dynamical models are critical for the analysis of complex biological systems. However, methods to systematically develop and discriminate among systems biology models are still lacking. Here, we describe a computational method that incorporates all hypothetical mechanisms about the architecture of a biological system into a single model, and automatically generates a set of simpler models compatible with observational data. As a proof-of-principle, we analyzed the dynamic control o...
Cohen, Jonathan; Shapiro, Maury; Grozovski, Elad; Fox, Ben; Lev, Shaul; Singer, Pierre
2009-01-01
Introduction Tolerance of a spontaneous breathing trial is an evidence-based strategy to predict successful weaning from mechanical ventilation. Some patients may not tolerate the trial because of the respiratory load imposed by the endotracheal tube, so varying levels of respiratory support are widely used during the trial. Automatic tube compensation (ATC), specifically developed to overcome the imposed work of breathing because of artificial airways, appears ideally suited for the weaning ...
Enhanced conformational space sampling improves the prediction of chemical shifts in proteins.
Markwick, Phineus R L; Cervantes, Carla F; Abel, Barrett L; Komives, Elizabeth A; Blackledge, Martin; McCammon, J Andrew
2010-02-01
A biased-potential molecular dynamics simulation method, accelerated molecular dynamics (AMD), was combined with the chemical shift prediction algorithm SHIFTX to calculate (1)H(N), (15)N, (13)Calpha, (13)Cbeta, and (13)C' chemical shifts of the ankyrin repeat protein IkappaBalpha (residues 67-206), the primary inhibitor of nuclear factor kappa-B (NF-kappaB). Free-energy-weighted molecular ensembles were generated over a range of acceleration levels, affording systematic enhancement of the conformational space sampling of the protein. We have found that the predicted chemical shifts, particularly for the (15)N, (13)Calpha, and (13)Cbeta nuclei, improve substantially with enhanced conformational space sampling up to an optimal acceleration level. Significant improvement in the predicted chemical shift data coincides with those regions of the protein that exhibit backbone dynamics on longer time scales. Interestingly, the optimal acceleration level for reproduction of the chemical shift data has previously been shown to best reproduce the experimental residual dipolar coupling (RDC) data for this system, as both chemical shift data and RDCs report on an ensemble and time average in the millisecond range. PMID:20063881
Performance prediction of four-contact vertical Hall-devices using a conformal mapping technique
Yang, Huang; Yue, Xu; Yufeng, Guo
2015-12-01
Instead of the conventional design with five contacts in the sensor active area, innovative vertical Hall devices (VHDs) with four contacts and six contacts are asymmetrical in structural design but symmetrical in the current flow that can be well fit for the spinning current technique for offset elimination. In this article, a conformal mapping calculation method is used to predict the performance of asymmetrical VHD embedded in a deep n-well with four contacts. Furthermore, to make the calculation more accurate, the junction field effect is also involved into the conformal mapping method. The error between calculated and simulated results is less than 5% for the current-related sensitivity, and approximately 13% for the voltage-related sensitivity. This proves that such calculations can be used to predict the optimal structure of the vertical Hall-devices. Project supported by the Natural Science Foundation of Jiangsu Province, China (Nos. BK20131379, BK20141431) and the Graduate Research and Innovation Projects of Jiangsu Province (No. SJLX_0373).
Venâncio, Mateus F.; Dos Santos, Hélio F.; De Almeida, Wagner B.
2016-06-01
The contribution of internal rotation to the thermal correction of Gibbs free energy (ΔG) is estimated using the quantum pendulum model (QPM) to solve the characteristic Schrödinger equation. The procedure is applied to theoretical prediction of conformational population of 1,2-difluorethane (1,2-DFE) and 1,2-dichloroethane (1,2-DCE) molecules. The predicted population for the anti form was 37% and 75%, for 1,2-DFE and 1,2-DCE respectively, in excellent agreement with experimental gas phase data available, 37 ± 5% and 78 ± 5%. These results provide great support to the use of the QPM model to account for the low vibrational frequency modes effect on the calculation of thermodynamic properties.
Directory of Open Access Journals (Sweden)
Paolo Melillo
Full Text Available There is consensus that Heart Rate Variability is associated with the risk of vascular events. However, Heart Rate Variability predictive value for vascular events is not completely clear. The aim of this study is to develop novel predictive models based on data-mining algorithms to provide an automatic risk stratification tool for hypertensive patients.A database of 139 Holter recordings with clinical data of hypertensive patients followed up for at least 12 months were collected ad hoc. Subjects who experienced a vascular event (i.e., myocardial infarction, stroke, syncopal event were considered as high-risk subjects. Several data-mining algorithms (such as support vector machine, tree-based classifier, artificial neural network were used to develop automatic classifiers and their accuracy was tested by assessing the receiver-operator characteristics curve. Moreover, we tested the echographic parameters, which have been showed as powerful predictors of future vascular events.The best predictive model was based on random forest and enabled to identify high-risk hypertensive patients with sensitivity and specificity rates of 71.4% and 87.8%, respectively. The Heart Rate Variability based classifier showed higher predictive values than the conventional echographic parameters, which are considered as significant cardiovascular risk factors.Combination of Heart Rate Variability measures, analyzed with data-mining algorithm, could be a reliable tool for identifying hypertensive patients at high risk to develop future vascular events.
Lu, Chao; Li, Xubin; Wu, Dongsheng; Zheng, Lianqing; Yang, Wei
2016-01-12
analysis suggests that because essential conformational events are mainly driven by the compensating fluctuations of essential solute-solvent and solute-solute interactions, commonly employed "predictive" sampling methods are unlikely to be effective on this seemingly "simple" system. The gOST development presented in this paper illustrates how to employ the OSS scheme for physics-based sampling method designs. PMID:26636477
DEFF Research Database (Denmark)
Ryttov, Thomas Aaby; Sannino, Francesco
2010-01-01
fixed point. As a consistency check we recover the previously investigated bounds of the conformal windows when restricting to a single matter representation. The earlier conformal windows can be imagined to be part now of the new conformal house. We predict the nonperturbative anomalous dimensions at...... the infrared fixed points. We further investigate the effects of adding mass terms to the condensates on the conformal house chiral dynamics and construct the simplest instanton induced effective Lagrangian terms...
Sadeghi, Mehdi; Parto, Sahar; Arab, Shahriar; Ranjbar, Bijan
2005-06-20
We have used a statistical approach for protein secondary structure prediction based on information theory and simultaneously taking into consideration pairwise residue types and conformational states. Since the prediction of residue secondary structure by one residue window sliding make ambiguity in state prediction, we used a dynamic programming algorithm to find the path with maximum score. A score system for residue pairs in particular conformations is derived for adjacent neighbors up to ten residue apart in sequence. The three state overall per-residue accuracy, Q3, of this method in a jackknife test with dataset created from PDBSELECT is more than 70%. PMID:15936021
Liu, Zhaomin; Pottel, Joshua; Shahamat, Moeed; Tomberg, Anna; Labute, Paul; Moitessier, Nicolas
2016-04-25
Computational chemists use structure-based drug design and molecular dynamics of drug/protein complexes which require an accurate description of the conformational space of drugs. Organic chemists use qualitative chemical principles such as the effect of electronegativity on hyperconjugation, the impact of steric clashes on stereochemical outcome of reactions, and the consequence of resonance on the shape of molecules to rationalize experimental observations. While computational chemists speak about electron densities and molecular orbitals, organic chemists speak about partial charges and localized molecular orbitals. Attempts to reconcile these two parallel approaches such as programs for natural bond orbitals and intrinsic atomic orbitals computing Lewis structures-like orbitals and reaction mechanism have appeared. In the past, we have shown that encoding and quantifying chemistry knowledge and qualitative principles can lead to predictive methods. In the same vein, we thought to understand the conformational behaviors of molecules and to encode this knowledge back into a molecular mechanics tool computing conformational potential energy and to develop an alternative to atom types and training of force fields on large sets of molecules. Herein, we describe a conceptually new approach to model torsion energies based on fundamental chemistry principles. To demonstrate our approach, torsional energy parameters were derived on-the-fly from atomic properties. When the torsional energy terms implemented in GAFF, Parm@Frosst, and MMFF94 were substituted by our method, the accuracy of these force fields to reproduce MP2-derived torsional energy profiles and their transferability to a variety of functional groups and drug fragments were overall improved. In addition, our method did not rely on atom types and consequently did not suffer from poor automated atom type assignments. PMID:27028941
Knyazev, S N; Kalyakin, V Y; Deryabin, I N; Fedorov, B A; Smirnov, A V; Stepanov, E O; Porozov, Yu B
2015-01-01
The "coarse-grained" model of protein conformational mobility is presented. We compared the trajectories of conformational motions predicted for five proteins using this model with the motion obtained by the method of the "nearest neighbor", based on small-angle X-ray scattering data. It is shown that for all studied proteins the sequence of conformations calculated on the basis of "coarse-grained" model and on the basis of the "nearest neighbor", coincides well, although there are exceptions. Some separate consideration should be given to each protein to discern the causes of these exceptions. PMID:26841499
Natalia N. Gorinchoy; Isaac B. Bersuker
2012-01-01
The electron-conformational (EC) method is employed for the toxicophore (Tph) identification and quantitative prediction of toxicity using the training set of 24 compounds that are considered as fragrance allergens. The values of a=LD50 in oral exposure of rats were chosen as a measure of toxicity. EC parameters are evaluated on the base of conformational analysis and ab initio electronic structure calculations (including solvent influence). The Tph consists of four sites which in this ser...
Ødegård, C; Svendsen, M; Heringstad, B
2015-06-01
The aim of this study was to evaluate whether the predictive correlation of genomic breeding values (GEBV) for claw disorders increased by including genetically correlated traits as additional information in the analyses. Predictive correlations of GEBV for claw disorders were calculated based on claw disorders only and by analyzing claw disorders together with genetically correlated foot and leg conformation traits. The claw disorders analyzed were corkscrew claw (CSC); infectious claw disorder, including dermatitis, heel horn erosion, and interdigital phlegmon; and laminitis-related claw disorder, including sole ulcer, white line disorder, and hemorrhage of sole and white line. The foot and leg conformation traits included were hoof quality, foot angle, rear leg rear view new, and rear leg rear view old. The data consisted of 183,728 daughters with claw health records and 421,319 daughters with foot and leg conformation scores. A 25K/54K single nucleotide polymorphism (SNP) data set containing 48,249 SNP was available for the analyses. The number of genotyped sires with daughter information in the analyses was 1,093 including claw disorders and 3,111 including claw disorders and foot and leg conformation traits. Predictive correlations of GEBV for CSC, infectious claw disorder, and laminitis-related claw disorder were calculated from a 10-fold cross-validation and from an additional validation set including the youngest sires. Only sires having daughters with claw health records were in the validation sets, thus increasing the reference population when adding foot and leg conformation traits. The results showed marginal improvement in the predictive correlation of GEBV for CSC when including hoof quality and foot angle, both in 10-fold cross-validation (from 0.35 to 0.37) and in the validation including the youngest sires (from 0.38 to 0.49). For infectious claw disorder and laminitis-related claw disorder, including foot and leg conformation traits had no effect
Bahi, Jacques M.; Guyeux, Christophe; Nicod, Jean-Marc; Philippe, Laurent
2013-01-01
Self-avoiding walks (SAW) are the source of very difficult problems in probabilities and enumerative combinatorics. They are also of great interest as they are, for instance, the basis of protein structure prediction in bioinformatics. Authors of this article have previously shown that, depending on the prediction algorithm, the sets of obtained conformations differ: all the self-avoiding walks can be reached using stretching-based algorithms whereas only the folded SAWs can be attained with ...
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Aaron Fong
2013-02-01
Full Text Available Previous theoretical studies of Mislow’s doubly-bridged biphenyl ketone 1 and dihydrodimethylphenanthrene 2 have determined significant entropic contributions to their normal (1 and inverse (2 conformational kinetic isotope effects (CKIEs. To broaden our investigation, we have used density functional methods to characterize the potential energy surfaces and vibrational frequencies for ground and transition structures of additional systems with measured CKIEs, including [2.2]-metaparacyclophane-d (3, 1,1'-binaphthyl (4, 2,2'-dibromo-[1,1'-biphenyl]-4,4'-dicarboxylic acid (5, and the 2-(N,N,N-trimethyl-2'-(N,N-dimethyl-diaminobiphenyl cation (6. We have also computed CKIEs in a number of systems whose experimental CKIEs are unknown. These include analogs of 1 in which the C=O groups have been replaced with CH2 (7, O (8, and S (9 atoms and ring-expanded variants of 2 containing CH2 (10, O (11, S (12, or C=O (13 groups. Vibrational entropy contributes to the CKIEs in all of these systems with the exception of cyclophane 3, whose isotope effect is predicted to be purely enthalpic in origin and whose Bigeleisen-Mayer ZPE term is equivalent to ΔΔ H‡. There is variable correspondence between these terms in the other molecules studied, thus identifying additional examples of systems in which the Bigeleisen-Mayer formalism does not correlate with ΔH/ΔS dissections.
Bhattacharya, Debswapna; Cao, Renzhi; Cheng, Jianlin
2016-01-01
Motivation: Recent experimental studies have suggested that proteins fold via stepwise assembly of structural units named ‘foldons’ through the process of sequential stabilization. Alongside, latest developments on computational side based on probabilistic modeling have shown promising direction to perform de novo protein conformational sampling from continuous space. However, existing computational approaches for de novo protein structure prediction often randomly sample protein conformational space as opposed to experimentally suggested stepwise sampling. Results: Here, we develop a novel generative, probabilistic model that simultaneously captures local structural preferences of backbone and side chain conformational space of polypeptide chains in a united-residue representation and performs experimentally motivated conditional conformational sampling via stepwise synthesis and assembly of foldon units that minimizes a composite physics and knowledge-based energy function for de novo protein structure prediction. The proposed method, UniCon3D, has been found to (i) sample lower energy conformations with higher accuracy than traditional random sampling in a small benchmark of 6 proteins; (ii) perform comparably with the top five automated methods on 30 difficult target domains from the 11th Critical Assessment of Protein Structure Prediction (CASP) experiment and on 15 difficult target domains from the 10th CASP experiment; and (iii) outperform two state-of-the-art approaches and a baseline counterpart of UniCon3D that performs traditional random sampling for protein modeling aided by predicted residue-residue contacts on 45 targets from the 10th edition of CASP. Availability and Implementation: Source code, executable versions, manuals and example data of UniCon3D for Linux and OSX are freely available to non-commercial users at http://sysbio.rnet.missouri.edu/UniCon3D/. Contact: chengji@missouri.edu Supplementary information: Supplementary data are
Sunnåker, Mikael; Zamora-Sillero, Elias; Dechant, Reinhard; Ludwig, Christina; Busetto, Alberto Giovanni; Wagner, Andreas; Stelling, Joerg
2013-05-28
Predictive dynamical models are critical for the analysis of complex biological systems. However, methods to systematically develop and discriminate among systems biology models are still lacking. We describe a computational method that incorporates all hypothetical mechanisms about the architecture of a biological system into a single model and automatically generates a set of simpler models compatible with observational data. As a proof of principle, we analyzed the dynamic control of the transcription factor Msn2 in Saccharomyces cerevisiae, specifically the short-term mechanisms mediating the cells' recovery after release from starvation stress. Our method determined that 12 of 192 possible models were compatible with available Msn2 localization data. Iterations between model predictions and rationally designed phosphoproteomics and imaging experiments identified a single-circuit topology with a relative probability of 99% among the 192 models. Model analysis revealed that the coupling of dynamic phenomena in Msn2 phosphorylation and transport could lead to efficient stress response signaling by establishing a rate-of-change sensor. Similar principles could apply to mammalian stress response pathways. Systematic construction of dynamic models may yield detailed insight into nonobvious molecular mechanisms. PMID:23716718
G.J. de Bruijn; B. Gardner; L. van Osch; F.F. Sniehotta
2014-01-01
Background Habit formation has been proposed as a way to maintain behaviour over time. Purpose Recent evidence suggests that constructs additional to repeated performance may predict physical automaticity, but no research has yet explored possible direct impacts of intention, planning, affect, and p
International Nuclear Information System (INIS)
Purpose: To assess the effects of radiation dose-volume distribution on the trajectory of IQ development after conformal radiation therapy (CRT) in pediatric patients with ependymoma. Methods and Materials: The study included 88 patients (median age, 2.8 years ± 4.5 years) with localized ependymoma who received CRT (54-59.4 Gy) that used a 1-cm margin on the postoperative tumor bed. Patients were evaluated with tests that included IQ measures at baseline (before CRT) and at 6, 12, 24, 36, 48, and 60 months. Differential dose-volume histograms (DVH) were derived for total-brain, supratentorial-brain, and right and left temporal-lobe volumes. The data were partitioned into three dose intervals and integrated to create variables that represent the fractional volume that received dose over the specified intervals (e.g., V0-20Gy, V20-40Gy, V40-65Gy) and modeled with clinical variables to develop a regression equation to estimate IQ after CRT. Results: A total of 327 IQ tests were performed in 66 patients with infratentorial tumors and 20 with supratentorial tumors. The median follow-up was 29.4 months. For all patients, IQ was best estimated by age (years) at CRT; percent volume of the supratentorial brain that received doses between 0 and 20 Gy, 20 and 40 Gy, and 40 and 65 Gy; and time (months) after CRT. Age contributed significantly to the intercept (p > 0.0001), and the dose-volume coefficients were statistically significant (V0-20Gy, p = 0.01; V20-40Gy, p 40-65Gy, p = 0.04). A similar model was developed exclusively for patients with infratentorial tumors but not supratentorial tumors. Conclusion: Radiation dosimetry can be used to predict IQ after CRT in patients with localized ependymoma. The specificity of models may be enhanced by grouping according to tumor location
First principles prediction of the third conformer of hydrogenated BN sheet
International Nuclear Information System (INIS)
We report, using first principles density functional calculations, the relative stabilities, structural and electronic properties of various conformers of hydrogenated BN sheet (BHNH). The already known chair and boat BHNH conformers are structurally similar to those of graphane. We propose a third BHNH conformer called 'stirrup' which turns out to be the most stable one, as also verified by frequency analysis. In this conformer, the B-H and N-H bonds of a hexagon alternate in 3-up and 3-down fashion on either side of the sheet. We also explore that any other alternative hydrogenation of the BN sheet disrupts its periodic puckered geometry and turns out to be energetically less stable. (copyright 2010 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim) (orig.)
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Natalia N. Gorinchoy
2012-06-01
Full Text Available The electron-conformational (EC method is employed for the toxicophore (Tph identification and quantitative prediction of toxicity using the training set of 24 compounds that are considered as fragrance allergens. The values of a=LD50 in oral exposure of rats were chosen as a measure of toxicity. EC parameters are evaluated on the base of conformational analysis and ab initio electronic structure calculations (including solvent influence. The Tph consists of four sites which in this series of compounds are represented by three carbon and one oxygen atoms, but may be any other atoms that have the same electronic and geometric features within the tolerance limits. The regression model taking into consideration the Tph flexibility, anti-Tph shielding, and influence of out-of-Tph functional groups predicts well the experimental values of toxicity (R2 = 0.93 with a reasonable leaveone- out cross-validation.
Good, Jessica J.; Sanchez, Diana T.
2010-01-01
Past research has shown that valuing gender conformity is associated with both positive and negative consequences for self-esteem and positive affect. The current research (women, n= 226; men, n= 175) explored these conflicting findings by separating out investing in societal gender ideals from personally valuing one's gender identity ("private…
Oda, Akifumi; Fukuyoshi, Shuichi
2015-06-01
The GADV hypothesis is a form of the protein world hypothesis, which suggests that life originated from proteins (Lacey et al. 1999; Ikehara 2002; Andras 2006). In the GADV hypothesis, life is thought to have originated from primitive proteins constructed of only glycine, alanine, aspartic acid, and valine ([GADV]-proteins). In this study, the three-dimensional (3D) conformations of randomly generated short [GADV]-peptides were computationally investigated using replica-exchange molecular dynamics (REMD) simulations (Sugita and Okamoto 1999). Because the peptides used in this study consisted of only 20 residues each, they could not form certain 3D structures. However, the conformational tendencies of the peptides were elucidated by analyzing the conformational ensembles generated by REMD simulations. The results indicate that secondary structures can be formed in several randomly generated [GADV]-peptides. A long helical structure was found in one of the hydrophobic peptides, supporting the conjecture of the GADV hypothesis that many peptides aggregated to form peptide multimers with enzymatic activity in the primordial soup. In addition, these results indicate that REMD simulations can be used for the structural investigation of short peptides.
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Oliva Baldo
2009-11-01
Full Text Available Abstract Background Recent advances on high-throughput technologies have produced a vast amount of protein sequences, while the number of high-resolution structures has seen a limited increase. This has impelled the production of many strategies to built protein structures from its sequence, generating a considerable amount of alternative models. The selection of the closest model to the native conformation has thus become crucial for structure prediction. Several methods have been developed to score protein models by energies, knowledge-based potentials and combination of both. Results Here, we present and demonstrate a theory to split the knowledge-based potentials in scoring terms biologically meaningful and to combine them in new scores to predict near-native structures. Our strategy allows circumventing the problem of defining the reference state. In this approach we give the proof for a simple and linear application that can be further improved by optimizing the combination of Zscores. Using the simplest composite score ( we obtained predictions similar to state-of-the-art methods. Besides, our approach has the advantage of identifying the most relevant terms involved in the stability of the protein structure. Finally, we also use the composite Zscores to assess the conformation of models and to detect local errors. Conclusion We have introduced a method to split knowledge-based potentials and to solve the problem of defining a reference state. The new scores have detected near-native structures as accurately as state-of-art methods and have been successful to identify wrongly modeled regions of many near-native conformations.
The Masculinity of Money: Automatic Stereotypes Predict Gender Differences in Estimated Salaries
Williams, Melissa J.; Paluck, Elizabeth Levy; Spencer-Rodgers, Julie
2010-01-01
We present the first empirical investigation of why men are assumed to earn higher salaries than women (the "salary estimation effect"). Although this phenomenon is typically attributed to conscious consideration of the national wage gap (i.e., real inequities in salary), we hypothesize instead that it reflects differential, automatic economic…
Beyond Prediction: First Steps toward Automatic Intervention in MOOC Student Stopout
Whitehill, Jacob; Williams, Joseph; Lopez, Glenn; Coleman, Cody; Reich, Justin
2015-01-01
High attrition rates in massive open online courses (MOOCs) have motivated growing interest in the automatic detection of student "stopout". Stopout classifiers can be used to orchestrate an intervention before students quit, and to survey students dynamically about why they ceased participation. In this paper we expand on existing…
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Jian Zhang
2014-01-01
Full Text Available B-cell epitopes are regions of the antigen surface which can be recognized by certain antibodies and elicit the immune response. Identification of epitopes for a given antigen chain finds vital applications in vaccine and drug research. Experimental prediction of B-cell epitopes is time-consuming and resource intensive, which may benefit from the computational approaches to identify B-cell epitopes. In this paper, a novel cost-sensitive ensemble algorithm is proposed for predicting the antigenic determinant residues and then a spatial clustering algorithm is adopted to identify the potential epitopes. Firstly, we explore various discriminative features from primary sequences. Secondly, cost-sensitive ensemble scheme is introduced to deal with imbalanced learning problem. Thirdly, we adopt spatial algorithm to tell which residues may potentially form the epitopes. Based on the strategies mentioned above, a new predictor, called CBEP (conformational B-cell epitopes prediction, is proposed in this study. CBEP achieves good prediction performance with the mean AUC scores (AUCs of 0.721 and 0.703 on two benchmark datasets (bound and unbound using the leave-one-out cross-validation (LOOCV. When compared with previous prediction tools, CBEP produces higher sensitivity and comparable specificity values. A web server named CBEP which implements the proposed method is available for academic use.
Zhang, Jian; Zhao, Xiaowei; Sun, Pingping; Gao, Bo; Ma, Zhiqiang
2014-01-01
B-cell epitopes are regions of the antigen surface which can be recognized by certain antibodies and elicit the immune response. Identification of epitopes for a given antigen chain finds vital applications in vaccine and drug research. Experimental prediction of B-cell epitopes is time-consuming and resource intensive, which may benefit from the computational approaches to identify B-cell epitopes. In this paper, a novel cost-sensitive ensemble algorithm is proposed for predicting the antigenic determinant residues and then a spatial clustering algorithm is adopted to identify the potential epitopes. Firstly, we explore various discriminative features from primary sequences. Secondly, cost-sensitive ensemble scheme is introduced to deal with imbalanced learning problem. Thirdly, we adopt spatial algorithm to tell which residues may potentially form the epitopes. Based on the strategies mentioned above, a new predictor, called CBEP (conformational B-cell epitopes prediction), is proposed in this study. CBEP achieves good prediction performance with the mean AUC scores (AUCs) of 0.721 and 0.703 on two benchmark datasets (bound and unbound) using the leave-one-out cross-validation (LOOCV). When compared with previous prediction tools, CBEP produces higher sensitivity and comparable specificity values. A web server named CBEP which implements the proposed method is available for academic use. PMID:25045691
Nouretdinov, Ilia; Gammerman, Alex; Qi, Yanjun; Klein-Seetharaman, Judith
2012-01-01
Identifying protein-protein interactions (PPI’s) is critical for understanding virtually all cellular molecular mechanisms. Previously, predicting PPI’s was treated as a binary classification task and has commonly been solved in a supervised setting which requires a positive labeled set of known PPI’s and a negative labeled set of non-interacting protein pairs. In those methods, the learner provides the likelihood of the predicted interaction, but without a confidence level associated with ea...
Wilcox, Kevin R; Blair, John M; Smith, Melinda D; Knapp, Alan K
2016-03-01
Central to understanding global C cycle dynamics is the functional relationship between precipitation and net primary production (NPP). At large spatial (regional) scales, the responsiveness of aboveground NPP (ANPP) to interannual variation in annual precipitation (AP; ANPPsens) is inversely related to site-level ANPP, coinciding with turnover of plant communities along precipitation gradients. Within ecosystems experiencing chronic alterations in water availability, plant community change will also occur with unknown consequences for ANPPsens. To examine the role plant community shifts may play in determining alterations in site-level ANPPPsens, we experimentally increased precipitation by approximately 35% for two decades in a native Central U.S. grassland. Consistent with regional models, ANPPsens decreased initially as water availability and ANPP increased. However, ANPPsens shifted back to ambient levels when mesic species increased in abundance in the plant community. Similarly, in grassland sites with distinct mesic and xeric plant communities and corresponding 50% differences in ANPP, ANPPsens did not differ over almost three decades. We conclude that responses in ANPPsens to chronic alterations in water availability within an ecosystem may not conform to regional AP-ANPP patterns, despite expected changes in ANPP and plant communities. The result is unanticipated functional resistance to climate change at the site scale. PMID:27197383
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Gardner Benjamin
2012-08-01
Full Text Available Abstract Background The twelve-item Self-Report Habit Index (SRHI is the most popular measure of energy-balance related habits. This measure characterises habit by automatic activation, behavioural frequency, and relevance to self-identity. Previous empirical research suggests that the SRHI may be abbreviated with no losses in reliability or predictive utility. Drawing on recent theorising suggesting that automaticity is the ‘active ingredient’ of habit-behaviour relationships, we tested whether an automaticity-specific SRHI subscale could capture habit-based behaviour patterns in self-report data. Methods A content validity task was undertaken to identify a subset of automaticity indicators within the SRHI. The reliability, convergent validity and predictive validity of the automaticity item subset was subsequently tested in secondary analyses of all previous SRHI applications, identified via systematic review, and in primary analyses of four raw datasets relating to energy‐balance relevant behaviours (inactive travel, active travel, snacking, and alcohol consumption. Results A four-item automaticity subscale (the ‘Self-Report Behavioural Automaticity Index’; ‘SRBAI’ was found to be reliable and sensitive to two hypothesised effects of habit on behaviour: a habit-behaviour correlation, and a moderating effect of habit on the intention-behaviour relationship. Conclusion The SRBAI offers a parsimonious measure that adequately captures habitual behaviour patterns. The SRBAI may be of particular utility in predicting future behaviour and in studies tracking habit formation or disruption.
Prediction of the higher-order terms based on Borel resummation with conformal mapping
Kompaniets, M
2016-01-01
In this paper we discuss the method of the resummation of the asymptotic series suggested by Kazakov et al. (1978) and predictions of the higher order terms based on this approach. Application of this method to $\\varphi^4$ model is discussed.
Automatic machine learning based prediction of cardiovascular events in lung cancer screening data
de Vos, Bob D.; de Jong, Pim A.; Wolterink, Jelmer M.; Vliegenthart, Rozemarijn; Wielingen, Geoffrey V. F.; Viergever, Max A.; Išgum, Ivana
2015-03-01
Calcium burden determined in CT images acquired in lung cancer screening is a strong predictor of cardiovascular events (CVEs). This study investigated whether subjects undergoing such screening who are at risk of a CVE can be identified using automatic image analysis and subject characteristics. Moreover, the study examined whether these individuals can be identified using solely image information, or if a combination of image and subject data is needed. A set of 3559 male subjects undergoing Dutch-Belgian lung cancer screening trial was included. Low-dose non-ECG synchronized chest CT images acquired at baseline were analyzed (1834 scanned in the University Medical Center Groningen, 1725 in the University Medical Center Utrecht). Aortic and coronary calcifications were identified using previously developed automatic algorithms. A set of features describing number, volume and size distribution of the detected calcifications was computed. Age of the participants was extracted from image headers. Features describing participants' smoking status, smoking history and past CVEs were obtained. CVEs that occurred within three years after the imaging were used as outcome. Support vector machine classification was performed employing different feature sets using sets of only image features, or a combination of image and subject related characteristics. Classification based solely on the image features resulted in the area under the ROC curve (Az) of 0.69. A combination of image and subject features resulted in an Az of 0.71. The results demonstrate that subjects undergoing lung cancer screening who are at risk of CVE can be identified using automatic image analysis. Adding subject information slightly improved the performance.
Predictive tools for severe dengue conforming to World Health Organization 2009 criteria.
Directory of Open Access Journals (Sweden)
Luis R Carrasco
2014-07-01
Full Text Available Dengue causes 50 million infections per year, posing a large disease and economic burden in tropical and subtropical regions. Only a proportion of dengue cases require hospitalization, and predictive tools to triage dengue patients at greater risk of complications may optimize usage of limited healthcare resources. For severe dengue (SD, proposed by the World Health Organization (WHO 2009 dengue guidelines, predictive tools are lacking.We undertook a retrospective study of adult dengue patients in Tan Tock Seng Hospital, Singapore, from 2006 to 2008. Demographic, clinical and laboratory variables at presentation from dengue polymerase chain reaction-positive and serology-positive patients were used to predict the development of SD after hospitalization using generalized linear models (GLMs.Predictive tools compatible with well-resourced and resource-limited settings--not requiring laboratory measurements--performed acceptably with optimism-corrected specificities of 29% and 27% respectively for 90% sensitivity. Higher risk of severe dengue (SD was associated with female gender, lower than normal hematocrit level, abdominal distension, vomiting and fever on admission. Lower risk of SD was associated with more years of age (in a cohort with an interquartile range of 27-47 years of age, leucopenia and fever duration on admission. Among the warning signs proposed by WHO 2009, we found support for abdominal pain or tenderness and vomiting as predictors of combined forms of SD.The application of these predictive tools in the clinical setting may reduce unnecessary admissions by 19% allowing the allocation of scarce public health resources to patients according to the severity of outcomes.
Positive-unlabeled learning for the prediction of conformational B-cell epitopes
Ren, Jing; Liu, Qian; Ellis, John; Li, Jinyan
2015-01-01
Background The incomplete ground truth of training data of B-cell epitopes is a demanding issue in computational epitope prediction. The challenge is that only a small fraction of the surface residues of an antigen are confirmed as antigenic residues (positive training data); the remaining residues are unlabeled. As some of these uncertain residues can possibly be grouped to form novel but currently unknown epitopes, it is misguided to unanimously classify all the unlabeled residues as negati...
International Nuclear Information System (INIS)
Purpose: According to estimations around 230 people die as a result of radon exposure in Switzerland. This public health concern makes reliable indoor radon prediction and mapping methods necessary in order to improve risk communication to the public. The aim of this study was to develop an automated method to classify lithological units according to their radon characteristics and to develop mapping and predictive tools in order to improve local radon prediction. Method: About 240 000 indoor radon concentration (IRC) measurements in about 150 000 buildings were available for our analysis. The automated classification of lithological units was based on k-medoids clustering via pair-wise Kolmogorov distances between IRC distributions of lithological units. For IRC mapping and prediction we used random forests and Bayesian additive regression trees (BART). Results: The automated classification groups lithological units well in terms of their IRC characteristics. Especially the IRC differences in metamorphic rocks like gneiss are well revealed by this method. The maps produced by random forests soundly represent the regional difference of IRCs in Switzerland and improve the spatial detail compared to existing approaches. We could explain 33% of the variations in IRC data with random forests. Additionally, the influence of a variable evaluated by random forests shows that building characteristics are less important predictors for IRCs than spatial/geological influences. BART could explain 29% of IRC variability and produced maps that indicate the prediction uncertainty. Conclusion: Ensemble regression trees are a powerful tool to model and understand the multidimensional influences on IRCs. Automatic clustering of lithological units complements this method by facilitating the interpretation of radon properties of rock types. This study provides an important element for radon risk communication. Future approaches should consider taking into account further variables
Wang, Bao; Wei, Guowei
2016-01-01
In this work, a systematic protocol is proposed to automatically parametrize implicit solvent models with polar and nonpolar components. The proposed protocol utilizes the classical Poisson model or the Kohn-Sham density functional theory (KSDFT) based polarizable Poisson model for modeling polar solvation free energies. For the nonpolar component, either the standard model of surface area, molecular volume, and van der Waals interactions, or a model with atomic surface areas and molecular volume is employed. Based on the assumption that similar molecules have similar parametrizations, we develop scoring and ranking algorithms to classify solute molecules. Four sets of radius parameters are combined with four sets of charge force fields to arrive at a total of 16 different parametrizations for the Poisson model. A large database with 668 experimental data is utilized to validate the proposed protocol. The lowest leave-one-out root mean square (RMS) error for the database is 1.33k cal/mol. Additionally, five s...
Automatic prediction of rheumatoid arthritis disease activity from the electronic medical records.
Directory of Open Access Journals (Sweden)
Chen Lin
Full Text Available OBJECTIVE: We aimed to mine the data in the Electronic Medical Record to automatically discover patients' Rheumatoid Arthritis disease activity at discrete rheumatology clinic visits. We cast the problem as a document classification task where the feature space includes concepts from the clinical narrative and lab values as stored in the Electronic Medical Record. MATERIALS AND METHODS: The Training Set consisted of 2792 clinical notes and associated lab values. Test Set 1 included 1749 clinical notes and associated lab values. Test Set 2 included 344 clinical notes for which there were no associated lab values. The Apache clinical Text Analysis and Knowledge Extraction System was used to analyze the text and transform it into informative features to be combined with relevant lab values. RESULTS: Experiments over a range of machine learning algorithms and features were conducted. The best performing combination was linear kernel Support Vector Machines with Unified Medical Language System Concept Unique Identifier features with feature selection and lab values. The Area Under the Receiver Operating Characteristic Curve (AUC is 0.831 (σ = 0.0317, statistically significant as compared to two baselines (AUC = 0.758, σ = 0.0291. Algorithms demonstrated superior performance on cases clinically defined as extreme categories of disease activity (Remission and High compared to those defined as intermediate categories (Moderate and Low and included laboratory data on inflammatory markers. CONCLUSION: Automatic Rheumatoid Arthritis disease activity discovery from Electronic Medical Record data is a learnable task approximating human performance. As a result, this approach might have several research applications, such as the identification of patients for genome-wide pharmacogenetic studies that require large sample sizes with precise definitions of disease activity and response to therapies.
DEFF Research Database (Denmark)
Simonsen, Martin; Maetschke, S.R.; Ragan, M.A.
2012-01-01
Motivation: Phylogenetic profiling methods can achieve good accuracy in predicting protein–protein interactions, especially in prokaryotes. Recent studies have shown that the choice of reference taxa (RT) is critical for accurate prediction, but with more than 2500 fully sequenced taxa publicly......: We present three novel methods for automating the selection of RT, using machine learning based on known protein–protein interaction networks. One of these methods in particular, Tree-Based Search, yields greatly improved prediction accuracies. We further show that different methods for constituting...
Automatic Artefact Removal and CO2 Prediction from the EEG Signals of Preterm Babies
Buriro, Abdul Baseer
2014-01-01
This dissertation describes research whose the purpose is to remove artefacts from the EEG signals of preterm neonates, thereby facilitating the prediction of carbon dioxide levels dissolved in the blood; this was achieved using key statistics obtained from the EEG. The EEG signals of neonates were recorded over a 24 – 36 hours period using LabVIEW (National Instruments) software and a XLTEK EMU40EX breakout head box with a 7- electrodes configuration. Raw EEG signals of neonates were process...
Santor, Darcy A.; Messervey, Deanna; Kusumakar, Vivek
2000-01-01
Developed and validated short measures of peer pressure, peer conformity, and popularity with 148 adolescent Canadian boys and girls in grades 11 to 13. Results show all constructed measures to be internally consistent. Peer pressure and peer conformity were stronger predictors of risk behavior than measures assessing popularity, general…
DEFF Research Database (Denmark)
Gu, Jiwei; Graff, Claus; Melgaard, Jacob; Lundbye-Christensen, Søren; Schmidt, Erik Berg; Torp-Pedersen, Christian; Thorsteinsson, Kristinn; Andreasen, Jan Jesper
2015-01-01
ECG monitoring. A semi-automatic machine capable of reading differentparameters of digitalized ECG’s was used to read both lead specific (P/QRS/T amplitudes/intervals) and global measurements (P-duration/QRS-duration/PR-interval/QT/Heart Rate/hypertrophy).Results: We divided the patients into two......P10 Predicting new-onset of postoperative atrial fibrillation in patients undergoingcardiac surgery using semi-automatic reading of perioperative electrocardiograms. Jiwei Gu, Claus Graff, Jacob Melgaard, Søren Lundbye-Christensen, Erik Berg Schmidt, Christian Torp-Pedersen, Kristinn Thorsteinsson......, Jan Jesper Andreasen. Aalborg, DenmarkBackground: Postoperative new onset atrial fibrillation (POAF) is the most common arrhythmia after cardiac surgery. The aim of this study was to evaluate if semi-automatic readings of perioperative electrocardiograms (ECGs) is of any value in predicting POAF after...
Mir, Tariq Ahmad; Ausloos, Marcel; Cerqueti, Roy
2014-11-01
The yearly aggregated tax income data of all, more than 8000, Italian municipalities are analyzed for a period of five years, from 2007 to 2011, to search for conformity or not with Benford's law, a counter-intuitive phenomenon observed in large tabulated data where the occurrence of numbers having smaller initial digits is more favored than those with larger digits. This is done in anticipation that large deviations from Benford's law will be found in view of tax evasion supposedly being widespread across Italy. Contrary to expectations, we show that the overall tax income data for all these years is in excellent agreement with Benford's law. Furthermore, we also analyze the data of Calabria, Campania and Sicily, the three Italian regions known for strong presence of mafia, to see if there are any marked deviations from Benford's law. Again, we find that all yearly data sets for Calabria and Sicily agree with Benford's law whereas only the 2007 and 2008 yearly data show departures from the law for Campania. These results are again surprising in view of underground and illegal nature of economic activities of mafia which significantly contribute to tax evasion. Some hypothesis for the found conformity is presented.
Delineating the conformal window
DEFF Research Database (Denmark)
Frandsen, Mads Toudal; Pickup, Thomas; Teper, Michael
We identify and characterise the conformal window in gauge theories relevant for beyond the standard model building, e.g. Technicolour, using the criteria of metric confinement and causal analytic couplings, which are known to be consistent with the phase diagram of supersymmetric QCD from Seiberg...... duality. Using these criteria we find perturbation theory to be consistent throughout the predicted conformal window for several of these gauge theories and we discuss recent lattice results in the light of our findings....
Mir, Tariq Ahmad; Cerqueti, Roy
2014-01-01
The yearly aggregated tax income data of all, more than 8000, Italian municipalities are analyzed for a period of five years, from 2007 to 2011, to search for conformity or not with Benford's law, a counter-intuitive phenomenon observed in large tabulated data where the occurrence of numbers having smaller initial digits is more favored than those with larger digits. This is done in anticipation that large deviations from Benford's law will be found in view of tax evasion supposedly being widespread across Italy. Contrary to expectations, we show that the overall tax income data for all these years is in excellent agreement with Benford's law. Furthermore, we also analyze the data of Calabria, Campania and Sicily, the three Italian regions known for strong presence of mafia, to see if there are any marked deviations from Benford's law. Again, we find that all yearly data sets for Calabria and Sicily agree with Benford's law whereas only the 2007 and 2008 yearly data show departures from the law for Campania. ...
Directory of Open Access Journals (Sweden)
Nikolay Ivantchev
2013-10-01
Full Text Available Conformism was studied among 46 workers with different kinds of occupations by means of two modified scales measuring conformity by Santor, Messervey, and Kusumakar (2000 – scale for perceived peer pressure and scale for conformism in antisocial situations. The hypothesis of the study that workers’ conformism is expressed in a medium degree was confirmed partly. More than a half of the workers conform in a medium degree for taking risk, and for the use of alcohol and drugs, and for sexual relationships. More than a half of the respondents conform in a small degree for anti-social activities (like a theft. The workers were more inclined to conform for risk taking (10.9%, then – for the use of alcohol, drugs and for sexual relationships (8.7%, and in the lowest degree – for anti-social activities (6.5%. The workers who were inclined for the use of alcohol and drugs tended also to conform for anti-social activities.
Energy Technology Data Exchange (ETDEWEB)
Ishii, A.; Korogi, Y.; Hirai, T.; Nishimura, R.; Murakami, R.; Ikushima, I.; Kawanaka, K.; Shinohara, M.; Yamashita, Y. [Depts. of Diagnostic Radiology, Rad iation Oncology, and Oral and Maxillofacial Surgery, Graduate School of Medical Sciences, Kumamoto Univ., Kumamoto (Japan)
2007-10-15
Background: Although intraarterial chemotherapy has been used to treat head and neck cancers, some cases have shown poor response. If we can predict the response to this therapy on MRI, individual treatment plans may be altered to the most appropriate form of treatment. Purpose: To evaluate whether MRI can predict the histological response to preoperative chemo irradiation in patients with cancer of the mouth. Material and Methods: This study comprised of 29 consecutive patients with 30 oral cancers. All patients underwent tumor resection after intraarterial infusion chemotherapy and conformal radiotherapy. We compared the margin of the tumor, the presence of bone invasion, tumor area, and volume on pre- and post-treatment MRI with histological responses. Results: Eighteen lesions showed an excellent response, nine exhibited a good response, and three a poor response. Only the tumor area on pretreatment T1-weighted images and the tumor area and volume on pretreatment enhanced T1-weighted images were significantly correlated with the histological response (P = 0.039, 0.008, and 0.016, respectively); smaller cancers showed better responses. The other factors were not significantly correlated with the histological responses. Conclusion: MRI parameters, excluding initial tumor area and volume, were not predictive of the histological response of oral tumors to preoperative treatment. Keywords: Head/neck; interventional; MR imaging; tongue.
International Nuclear Information System (INIS)
Purpose: To describe the probability of RILD by application of the Lyman-Kutcher-Burman normal-tissue complication (NTCP) model for primary liver carcinoma (PLC) treated with hypofractionated three-dimensional conformal radiotherapy (3D-CRT). Methods and Materials: A total of 109 PLC patients treated by 3D-CRT were followed for RILD. Of these patients, 93 were in liver cirrhosis of Child-Pugh Grade A, and 16 were in Child-Pugh Grade B. The Michigan NTCP model was used to predict the probability of RILD, and then the modified Lyman NTCP model was generated for Child-Pugh A and Child-Pugh B patients by maximum-likelihood analysis. Results: Of all patients, 17 developed RILD in which 8 were of Child-Pugh Grade A, and 9 were of Child-Pugh Grade B. The prediction of RILD by the Michigan model was underestimated for PLC patients. The modified n, m, TD5 (1) were 1.1, 0.28, and 40.5 Gy and 0.7, 0.43, and 23 Gy for patients with Child-Pugh A and B, respectively, which yielded better estimations of RILD probability. The hepatic tolerable doses (TD5) would be MDTNL of 21 Gy and 6 Gy, respectively, for Child-Pugh A and B patients. Conclusions: The Michigan model was probably not fit to predict RILD in PLC patients. A modified Lyman NTCP model for RILD was recommended
Directory of Open Access Journals (Sweden)
Roni Martono
2010-11-01
Full Text Available Abstract Background Selection of hepatitis B virus (HBV by host immunity has been suggested to give rise to variants with amino acid substitutions at or around the 'a' determinant of the surface antigen (HBsAg, the main target of antibody neutralization and diagnostic assays. However, there have never been successful attempts to provide evidence for this hypothesis, partly because the 3 D structure of HBsAg molecules has not been determined. Tertiary structure prediction of HBsAg solely from its primary amino acid sequence may reveal the molecular energetic of the mutated proteins. We carried out this preliminary study to analyze the predicted HBsAg conformation changes of HBV variants isolated from Indonesian blood donors undetectable by HBsAg assays and its significance, compared to other previously-reported variants that were associated with diagnostic failure. Results Three HBV variants (T123A, M133L and T143M and a wild type sequence were analyzed together with frequently emerged variants T123N, M133I, M133T, M133V, and T143L. Based on the Jameson-Wolf algorithm for calculating antigenic index, the first two amino acid substitutions resulted in slight changes in the antigenicity of the 'a' determinant, while all four of the comparative variants showed relatively more significant changes. In the pattern T143M, changes in antigenic index were more significant, both in its coverage and magnitude, even when compared to variant T143L. These data were also partially supported by the tertiary structure prediction, in which the pattern T143M showed larger shift in the HBsAg second loop structure compared to the others. Conclusions Single amino acid substitutions within or near the 'a' determinant of HBsAg may alter antigenicity properties of variant HBsAg, which can be shown by both its antigenic index and predicted 3 D conformation. Findings in this study emphasize the significance of variant T143M, the prevalent isolate with highest degree of
Haeseler, Friedrich
2003-01-01
Automatic sequences are sequences which are produced by a finite automaton. Although they are not random they may look as being random. They are complicated, in the sense of not being not ultimately periodic, they may look rather complicated, in the sense that it may not be easy to name the rule by which the sequence is generated, however there exists a rule which generates the sequence. The concept automatic sequences has special applications in algebra, number theory, finite automata and formal languages, combinatorics on words. The text deals with different aspects of automatic sequences, in particular:· a general introduction to automatic sequences· the basic (combinatorial) properties of automatic sequences· the algebraic approach to automatic sequences· geometric objects related to automatic sequences.
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Frauendiener Jörg
2004-01-01
Full Text Available The notion of conformal infinity has a long history within the research in Einstein's theory of gravity. Today, 'conformal infinity' is related to almost all other branches of research in general relativity, from quantisation procedures to abstract mathematical issues to numerical applications. This review article attempts to show how this concept gradually and inevitably evolved from physical issues, namely the need to understand gravitational radiation and isolated systems within the theory of gravitation, and how it lends itself very naturally to the solution of radiation problems in numerical relativity. The fundamental concept of null-infinity is introduced. Friedrich's regular conformal field equations are presented and various initial value problems for them are discussed. Finally, it is shown that the conformal field equations provide a very powerful method within numerical relativity to study global problems such as gravitational wave propagation and detection.
Directory of Open Access Journals (Sweden)
Frauendiener Jörg
2000-08-01
Full Text Available The notion of conformal infinity has a long history within the research in Einstein's theory of gravity. Today, ``conformal infinity'' is related with almost all other branches of research in general relativity, from quantisation procedures to abstract mathematical issues to numerical applications. This review article attempts to show how this concept gradually and inevitably evolved out of physical issues, namely the need to understand gravitational radiation and isolated systems within the theory of gravitation and how it lends itself very naturally to solve radiation problems in numerical relativity. The fundamental concept of null-infinity is introduced. Friedrich's regular conformal field equations are presented and various initial value problems for them are discussed. Finally, it is shown that the conformal field equations provide a very powerful method within numerical relativity to study global problems such as gravitational wave propagation and detection.
Wang, Sheng-Quan; Si, Zong-Guo; Brodsky, Stanley J
2016-01-01
The D0 collaboration at FermiLab has recently measured the top-quark pair forward-backward asymmetry in $\\bar p p \\to t \\bar t X$ reactions as a function of the $\\bar t t $ invariant mass $M_{t\\bar{t}}$. D0 observed that the asymmetry $A_{\\rm FB}(M_{t\\bar{t}})$ first increases and then decreases as $M_{t\\bar{t}}$ is increased. This behavior is not explained using conventional renormalization scale-setting, even by a next-to-next-to-leading order (N$^2$LO) QCD calculation -- one predicts a monotonically increasing behavior. In the conventional scale-setting method, one simply guesses a single renormalization scale $\\mu_r$ for the argument of the QCD running coupling and then varies it over an arbitrary range. However, the conventional method has inherent difficulties. ...... In contrast, if one fixes the scale using the Principle of Maximum Conformality (PMC), the resulting pQCD predictions are renormalization-scheme independent since all of the scheme-dependent $\\{\\beta_i\\}$-terms in the QCD perturbative seri...
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Mirelle F. Michalick-Triginelli
2015-12-01
Full Text Available AbstractThis study investigated the contribution of phonological awareness (PA and rapid automatized naming (RAN to the persistence of beginning reading difficulties in Portuguese. The study was longitudinal and involved 13 children who had shown little progress in learning to read during their 1st school year, and 13 children with typical reading development. At the beginning of the study, when participants were, on average, six years and nine months of age, their ability to read and spell words, and their PA and RAN skills were assessed. One year later, the children who had shown difficulties in learning to read were divided into two groups, based on their progress in learning to read during the course of the study: a group with persistent reading difficulties and a group whose difficulties had been overcome. Results showed that both groups performed equally poorly and below controls on the PA tasks at the beginning of the study. In contrast, only the children with persistent reading difficulties performed more poorly than controls on the RAN tasks at that time.
Shaghaghi, Hoora; Ebrahimi, Hossein Pasha; Fathi, Fariba; Bahrami Panah, Niloufar; Jalali-Heravi, Mehdi; Tafazzoli, Mohsen
2016-05-30
The dependency of amino acid chemical shifts on φ and ψ torsion angle is, independently, studied using a five-residue fragment of ubiquitin and ONIOM(DFT:HF) approach. The variation of absolute deviation of (13) C(α) chemical shifts relative to φ dihedral angle is specifically dependent on secondary structure of protein not on amino acid type and fragment sequence. This dependency is observed neither on any of (13) C(β) , and (1) H(α) chemical shifts nor on the variation of absolute deviation of (13) C(α) chemical shifts relative to ψ dihedral angle. The (13) C(α) absolute deviation chemical shifts (ADCC) plots are found as a suitable and simple tool to predict secondary structure of protein with no requirement of highly accurate calculations, priori knowledge of protein structure and structural refinement. Comparison of Full-DFT and ONIOM(DFT:HF) approaches illustrates that the trend of (13) C(α) ADCC plots are independent of computational method but not of basis set valence shell type. © 2016 Wiley Periodicals, Inc. PMID:26940760
H/L transition time estimation in JET using conformal predictors
International Nuclear Information System (INIS)
Highlights: ► H/L transitions have been predicted using H/L and L/H models. ► Models have been built using conformal predictors to hedge the prediction with confidence and credibility measures. ► Models have been trained using linear and radial basis function kernels. ► Conformal measures have proven their usefulness to validate data-driven models. - Abstract: Recent advances in data mining allow the automatic recognition of physical phenomena in the databases of fusion devices without human intervention. This is important to create large databases of physical events (thereby increasing the statistical relevance) in an unattended manner. Important examples are the L/H and H/L transitions. In this contribution, a novel technique is introduced to automatically locate H/L transitions in JET by using conformal predictors. The focus is on H/L transitions because typically there is not a clear signature in the time series of the most widely available signals to recognize the change of confinement. Conformal predictors hedge their prediction by means of two parameters: confidence and credibility. The technique has been based on binary supervised classifiers to separate the samples of the respective confinement modes. Results with several underlying classifiers are presented.
H/L transition time estimation in JET using conformal predictors
Energy Technology Data Exchange (ETDEWEB)
Gonzalez, S., E-mail: sergio.gonzalez@ciemat.es [Asociacion EURATOM/CIEMAT para Fusion, Madrid 28040 (Spain); Vega, J. [Asociacion EURATOM/CIEMAT para Fusion, Madrid 28040 (Spain); Murari, A. [Consorzio RFX, Associazione EURATOM/ENEA per la Fusione, Padova 4-25127 (Italy); Pereira, A. [Asociacion EURATOM/CIEMAT para Fusion, Madrid 28040 (Spain); Dormido-Canto, S.; Ramirez, J.M. [Departamento de Informatica y Automatica, UNED, Madrid 28040 (Spain)
2012-12-15
Highlights: Black-Right-Pointing-Pointer H/L transitions have been predicted using H/L and L/H models. Black-Right-Pointing-Pointer Models have been built using conformal predictors to hedge the prediction with confidence and credibility measures. Black-Right-Pointing-Pointer Models have been trained using linear and radial basis function kernels. Black-Right-Pointing-Pointer Conformal measures have proven their usefulness to validate data-driven models. - Abstract: Recent advances in data mining allow the automatic recognition of physical phenomena in the databases of fusion devices without human intervention. This is important to create large databases of physical events (thereby increasing the statistical relevance) in an unattended manner. Important examples are the L/H and H/L transitions. In this contribution, a novel technique is introduced to automatically locate H/L transitions in JET by using conformal predictors. The focus is on H/L transitions because typically there is not a clear signature in the time series of the most widely available signals to recognize the change of confinement. Conformal predictors hedge their prediction by means of two parameters: confidence and credibility. The technique has been based on binary supervised classifiers to separate the samples of the respective confinement modes. Results with several underlying classifiers are presented.
Institute of Scientific and Technical Information of China (English)
SHAO Yanqiu; HAN Jiqing; ZHAO Yongzhen; LIU Ting
2007-01-01
Stress is an important parameter for prosody processing in speech synthesis. In this paper, we compare the acoustic features of neutral tone syllables and strong stress syllables with moderate stress syllables, including pitch, syllable duration, intensity and pause length after syllable. The relation between duration and pitch, as well as the Third Tone (T3) and pitch are also studied. Three stress prediction models based on ANN, i.e. the acoustic model,the linguistic model and the mixed model, are presented for predicting Chinese sentential stress.The results show that the mixed model performs better than the other two models. In order to solve the problem of the diversity of manual labeling, an evaluation index of support ratio is proposed.
Haecker, Jens; Kroeplin, Bernd H.
2003-08-01
This paper describes our current work in developing a vision-based tracking and trajectory prediction system for an aerial robot based on low-cost digital cameras, image processing techniques, and a filtering and prediction algorithm. The system determines the pose (location and orientation) of a miniature airship, online during indoor flight, and will be used in a development framework for a future autonomous flight control system. Object localization is achieved by tracking an infra-red target array mounted to a model airship. Its pose in three-dimensional space can be computed from corresponding points in the images of two cameras which are calibrated in a global coordinate system. The calibration procedure and the localization, as well as some aspects of the measurement accuracy achieved, are discussed. Real-world applications provide an uncertain static or dynamic environment which complicates the tracking of a target. To overcome problems due to noisy data or even failed target detection in image frames, a filtering procedure is applied for estimating the airship's pose. In a first step, points in the two-dimensional image planes are directly tracked and propagated forward to the vehicle pose. In a second step, an adaptive noise Kalman filter is applied for estimating and predicting the flight trajectory. Its state is propagated back to points in the image planes to guide the detection algorithm by defining regions of confidence. Both approaches are combined in a tracking algorithm. In-flight measurements are used to validate the parameters of the adaption procedure. Some experimental results are shown.
International Nuclear Information System (INIS)
Multimodality therapy for esophageal cancer can cause various kinds of treatment-related sequelae, especially pulmonary toxicities. This prospective study aims to investigate the clinical and dosimetric parameters predicting lung injury in patients undergoing radiation therapy for esophageal cancer. Forty-five esophageal cancer patients were prospectively analyzed. The pulmonary toxicities (or sequelae) were evaluated by comparing chest X-ray films, pulmonary function tests and symptoms caused by pulmonary damage before and after treatment. All patients were treated with either three-dimensional radiotherapy (3DCRT) or with intensity-modulated radiotherapy (IMRT). The planning dose volume histogram was used to compute the lung volumes receiving more than 5, 10, 20 and 30 Gy (V5, V10, V20, V30) and mean lung dose. V20 was larger in the IMRT group than in the 3DCRT group (p=0.002). V20 (>15%) and V30 (>20%) resulted in a statistically significant increase in the occurrence of chronic pneumonitis (p=0.03) and acute pneumonitis (p=0.007), respectively. The study signifies that a larger volume of lung receives lower doses because of multiple beam arrangement and a smaller volume of lung receives higher doses because of better dose conformity in IMRT plans. Acute pneumonitis correlates more with V30 values, whereas chronic pneumonitis was predominantly seen in patients with higher V20 values. (author)
Conformal symmetries of FRW accelerating cosmologies
International Nuclear Information System (INIS)
We show that any accelerating Friedmann–Robertson–Walker (FRW) cosmology with equation of state w<−1/3 (and therefore not only a de Sitter stage with w=−1) exhibits three-dimensional conformal symmetry on future constant-time hypersurfaces if the bulk theory is invariant under bulk conformal Killing vectors. We also offer an alternative derivation of this result in terms of conformal Killing vectors and show that long wavelength comoving curvature perturbations of the perturbed FRW metric are just conformal Killing motions of the FRW background. We then extend the boundary conformal symmetry to the bulk for accelerating cosmologies. Our findings indicate that one can easily generate perturbations of scalar fields which are not only scale invariant, but also fully conformally invariant on super-Hubble scales. Measuring a scale-invariant power spectrum for the cosmological perturbation does not automatically imply that the universe went through a de Sitter stage
Energy Technology Data Exchange (ETDEWEB)
Funabiki, S.; Yamakawa, S. [Okayama University, Okayama (Japan). Faculty of Engineering; Ito, T. [Nishishiba Electric Co. Ltd., Hyogo (Japan)
1995-02-28
For the automatic voltage regulator (AVR) of a synchronous generator, various applications of self-tuning digital control (STC) have been experimented which successively adjusts PID gains to cope with dynamic characteristics such as disturbances of a plant. As one of such applications, a proposal has been made in this paper for a stable and highly adaptable control system by using a generalized predictive control as the control law and the sequential least-square method as the identification method. An experiment was carried out by a simulation and an experimental AVR, and the effectiveness was confirmed of this control method. The following points may be listed in summarizing the characteristics of this AVR. The arithmetic time is short, and a highly accurate identification value is obtainable. Since an oblivion coefficient is determined by the supremum trace gain method, the adaptability is increased on the parameter identification value. A stable control is obtained even if a plant is a non-minimum phase system. 10 refs., 11 figs., 2 tabs.
International Nuclear Information System (INIS)
Objective: To investigate the impact of PET/CT on clinical staging of non-small cell lung cancer (NSCLC), delineation of target volume, and prediction to alleviate radiation pneumonitis (RP) from 3-dimentional conformal radiotherapy (3D-CRT) planning. Methods: From October 2002 to June 2004, 34 patients diagnosed cytologically or pathologically with NSCLC, who were candidates for radical radiotherapy or surgery, received PET/CT scanning. Both images were transmitted into treatment planning system (TPS) workstations respectively and were fused and reconstructed. All patients were staged according to the 1997 World Health Organization (WHO) staging system. The impact of PET/CT on the clinical staging of all the patients was determined. The gross tumor volume (GTV) was delineated on the CT imaging and PET/CTfused imaging respectively. Based on the two images, 3D- CRT planning was made respectively at the TPS workstation with Topslane software, the planning target volumes (PTV) being defined with a 15 mm margin around GTV of primary lumps (PTV1) and 7 mm for involved lymph nodes (PTV2). Evaluating indexes including VPTV (volume of PTV, VPTV = VPTV1 + VPTV2), V20 (percentage of the total lung volume receiving more than 20 Gy), MLD (mean lung dose) , TCP (tumor control probability) , NTCP (normal tissue complication probability) , and Ds (dose to spinal cord) were selected to be paralleled to compare the quality of the two plans and the impact of PET/CT on RP was further analyzed. Results: In 13 of 34 (38.2%) cases, PET/CT information changed the clinical staging, 8 of which were upstaged and 5 downstaged. For 10 of 34 (29.4%) cases, PET/CT results modified their management decisions. Among 16 patients performed by surgery, 14 had consistent PET/CT staging with pathologic staging. The sensitivity of PET/CT was 93.3% and accuracy 87.5%. Difference of indexes including VPTV, V20 and MLD between the two radiation planning was statistically significant, but Ds, TCP and NTCP
Conformal covariance and the split property
Morinelli, Vincenzo; Weiner, Mihály
2016-01-01
We show that for a conformal local net of observables on the circle, the split property is automatic. Both full conformal covariance (i.e. diffeomorphism covariance) and the circle-setting play essential roles in this fact, while by previously constructed examples it was already known that even on the circle, M\\"obius covariance does not imply the split property. On the other hand, here we also provide an example of a local conformal net living on the two-dimensional Minkowski space, which - although being diffeomorphism covariant - does not have the split property.
Attitudinal Conformity and Anonymity
Tyson, Herbert; Kaplowitz, Stan
1977-01-01
Tested college students for conformity when conditions contributing to conformity were absent. Found that social pressures (responding in public, being surveyed by fellow group members) are necessary to produce conformity. (RL)
Detection and Prediction of Epileptic Seizures
DEFF Research Database (Denmark)
Duun-Henriksen, Jonas
monitoring of their brain waves. More specifically, three issues were investigated: The feasibility of automatic seizure prediction, optimization of automatic seizure detection algorithms, and the link between intra- and extracranial EEG. Regarding feasibility of automatic seizure prediction, neither the...
Neuroanatomical automatic segmentation in brain cancer patients
D’Haese, P.; Niermann, K; Cmelak, A.; Donnelly, E.; Duay, V.; Li, R; Dawant, B.
2003-01-01
Conformally prescribed radiation therapy for brain cancer requires precisely defining the target treatment area, as well as delineating vital brain structures which must be spared from radiotoxicity. The current clinical practice of manually segmenting brain structures can be complex and exceedingly time consuming. Automatic computeraided segmentation methods have been proposed to increase efficiency and reproducibility in developing radiation treatment plans. Previous studies have establishe...
Conformal symmetry and holographic cosmology
Skenderis, K.; Bzowski, A.W.
2013-01-01
This thesis presents a novel approach to cosmology using gauge/gravity duality. Analysis of the implications of conformal invariance in field theories leads to quantitative cosmological predictions which are in agreement with current data. Furthermore, holographic cosmology extends the theory of inflation beyond classical gravity.
Making the Case for Conformal Gravity
Mannheim, Philip D
2011-01-01
We review some recent developments in the conformal gravity theory that has been advanced as a candidate alternative to standard Einstein gravity. As a quantum theory the conformal theory is both renormalizable and unitary, with unitarity being obtained because the theory is a $PT$ symmetric rather than a Hermitian theory. We show that in the theory there can be no a priori classical curvature, with all curvature having to result from quantization. In the conformal theory gravity requires no independent quantization of its own, with it being quantized solely by virtue of its being coupled to a quantized matter source. Moreover, because it is this very coupling that fixes the strength of the gravitational field commutators, the gravity sector zero-point energy density and pressure fluctuations are then able to identically cancel the zero-point fluctuations associated with the matter sector. In addition, we show that when the conformal symmetry is spontaneously broken, the zero-point structure automatically rea...
Conformal Gravity Rotation Curves with a Conformal Higgs Halo
Horne, Keith
2016-01-01
We discuss the effect of a conformally coupled Higgs field on conformal gravity (CG) predictions for the rotation curves of galaxies. The Mannheim-Kazanas (MK) metric is a valid vacuum solution of CG's 4-th order Poisson equation only if the Higgs field has a particular radial profile, S(r)=S_0 a/(r+a), decreasing from S_0 at r=0 with radial scale length a. Since particle rest masses scale with S(r)/S_0, their world lines do not follow time-like geodesics of the MK metric g_{\\mu\
Conformal transformations and conformal invariance in gravitation
Dabrowski, Mariusz P.; Garecki, Janusz; Blaschke, David B.
2008-01-01
Conformal transformations are frequently used tools in order to study relations between various theories of gravity and the Einstein relativity. In this paper we discuss the rules of these transformations for geometric quantities as well as for the matter energy-momentum tensor. We show the subtlety of the matter energy-momentum conservation law which refers to the fact that the conformal transformation "creates" an extra matter term composed of the conformal factor which enters the conservat...
Conformal Invariance for Non-Relativistic Field Theory
Mehen, T; Wise, M B; Mehen, Thomas; Stewart, Iain W.; Wise, Mark B.
2000-01-01
Momentum space Ward identities are derived for the amputated n-point Green's functions in 3+1 dimensional non-relativistic conformal field theory. For n=4 and 6 the implications for scattering amplitudes (i.e. on-shell amputated Green's functions) are considered. Any scale invariant 2-to-2 scattering amplitude is also conformally invariant. However, conformal invariance imposes constraints on off-shell Green's functions and the three particle scattering amplitude which are not automatically satisfied if they are scale invariant. As an explicit example of a conformally invariant theory we consider non-relativistic particles in the infinite scattering length limit.
Insights into How Cyclic Peptides Switch Conformations.
McHugh, Sean M; Rogers, Julia R; Yu, Hongtao; Lin, Yu-Shan
2016-05-10
Cyclic peptides have recently emerged as promising modulators of protein-protein interactions. However, it is currently highly difficult to predict the structures of cyclic peptides owing to their rugged conformational free energy landscape, which prevents sampling of all thermodynamically relevant conformations. In this article, we first investigate how a relatively flexible cyclic hexapeptide switches conformations. It is found that, although the circular geometry of small cyclic peptides of size 6-8 may require rare, coherent dihedral changes to sample a new conformation, the changes are rather local, involving simultaneous changes of ϕi and ψi or ψi and ϕi+1. The understanding of how these cyclic peptides switch conformations enables the use of metadynamics simulations with reaction coordinates specifically targeting such coupled two-dihedral changes to effectively sample cyclic peptide conformational space. PMID:27031286
Alternative conformal quantum mechanics
Ho, Shih-Hao
2011-01-01
We investigate a one dimensional quantum mechanical model, which is invariant under translations and dilations but does not respect the conventional conformal invariance. We describe the possibility of modifying the conventional conformal transformation such that a scale invariant theory is also invariant under this new conformal transformation.
Superspace conformal field theory
Energy Technology Data Exchange (ETDEWEB)
Quella, Thomas [Koeln Univ. (Germany). Inst. fuer Theoretische Physik; Schomerus, Volker [Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany)
2013-07-15
Conformal sigma models and WZW models on coset superspaces provide important examples of logarithmic conformal field theories. They possess many applications to problems in string and condensed matter theory. We review recent results and developments, including the general construction of WZW models on type I supergroups, the classification of conformal sigma models and their embedding into string theory.
Superspace conformal field theory
International Nuclear Information System (INIS)
Conformal sigma models and WZW models on coset superspaces provide important examples of logarithmic conformal field theories. They possess many applications to problems in string and condensed matter theory. We review recent results and developments, including the general construction of WZW models on type I supergroups, the classification of conformal sigma models and their embedding into string theory.
Conformal and non Conformal Dilaton Gravity
Alvarez, Enrique; Mart'\\in, C P
2014-01-01
The quantum dynamics of the gravitational field non-minimally coupled to an (also dynamical) scalar field is studied in the broken phase. For a particular value of the coupling the system is classically conformal, and can actually be understood as the group averaging of Einstein-Hilbert's action under conformal transformations. Contradicting cherished beliefs, a conformal anomaly is found in the trace of the equations of motion. To one loop order, this anomaly vanishes on shell. Arguments are given supporting the fact that this does not happen to two loop order, where the anomaly is argued to be a real physical effect.
Conformal Transformations and Accelerated Cosmologies
Crooks, James L.; Frampton, Paul H.
2006-01-01
A cosmological theory that predicts a late-time accelerated attractor with a constant dark matter to dark energy ratio can be said to solve the Coincidence Problem. Such cosmologies are naturally generated in the context of non-standard gravity theories under conformal transformation because of the resulting couplings between scalar fields and matter. The present work examines four classes of these transformed theories and finds that only a small subset--those with a single scalar field--are ...
Woollard, W.J.
2006-01-01
In this chapter we will look at the ways in which you can use ICT in the classroom to support hypothesis and prediction and how modern technology is enabling: pattern seeking, extrapolation and interpolation to meet the challenges of the information explosion of the 21st century.
Directory of Open Access Journals (Sweden)
John Gialelis
2015-11-01
Full Text Available This paper compares two supervised learning algorithms for predicting the sleep stages based on the human brain activity. The first step of the presented work regards feature extraction from real human electroencephalography (EEG data together with its corresponding sleep stages that are utilized for training a support vector machine (SVM, and a fuzzy inference system (FIS algorithm. Then, the trained algorithms are used to predict the sleep stages of real human patients. Extended comparison results are demonstrated which indicate that both classifiers could be utilized as a basis for an unobtrusive sleep quality assessment.
Jones, Manon W.; Snowling, Margaret J.; Moll, Kristina
2016-01-01
Reading fluency is often predicted by rapid automatized naming (RAN) speed, which as the name implies, measures the automaticity with which familiar stimuli (e.g., letters) can be retrieved and named. Readers with dyslexia are considered to have less "automatized" access to lexical information, reflected in longer RAN times compared with…
Energy Technology Data Exchange (ETDEWEB)
Brodsky, Stanley J. [SLAC National Accelerator Lab., Menlo Park, CA (United States); Wang, Sheng -Quan [Chongqing Univ., Chongqing (People' s Republic of China); Guizhou Minzu Univ., Guiyang (People' s Republic of China); Wu, Xing -Gang [Chongqing Univ., Chongqing (People' s Republic of China); Si, Zong -Guo [Shandong Univ., Shandong (People' s Republic of China)
2016-01-07
In this study, the D0 collaboration at FermiLab has recently measured the top-quark pair forward-backward asymmetry in p¯p → tt¯X reactions as a function of the tt¯ invariant mass M_{tt¯}. The D0 result for A_{FB}(M_{tt¯} > 650 GeV) is smaller than A_{FB}(M_{tt¯}) obtained for small values of M_{tt¯}, which may indicate an “increasing-decreasing” behavior for A_{FB}(M_{tt¯} > M_{cut}). This behavior is not explained using conventional renormalization scale setting, or even by a next-to-next-to-leading order (N^{2}LO) QCD calculation—one predicts a monotonically increasing behavior. In the conventional scale-setting method, one simply guesses a single renormalization scale μr for the argument of the QCD running coupling and then varies it over an arbitrary range. However, the conventional method has inherent difficulties.
Does gender diversity promote non-conformity?
Amini, Makan; Ekström, Mathias; Ellingsen, Tore; Johannesson, Magnus; Strömsten, Fredrik
2015-01-01
Failure to express minority views may distort the behavior of company boards, committees, juries, and other decision-making bodies. Devising a new experimental procedure to measure such conformity in a judgment task, we compare the degree of conformity in groups with varying gender composition. Overall, our experiments offer little evidence that gender composition affects expression of minority views. A robust finding is that a subject's lack of ability predicts both a true propensity to acce...
Conformal symmetries of spacetimes
International Nuclear Information System (INIS)
In this paper, we give a unified and global new approach to the study of the conformal structure of the three classical Riemannian spaces as well as of the six relativistic and non-relativistic spacetimes (Minkowskian, de Sitter, anti-de Sitter, and both Newton-Hooke and Galilean). We obtain general expressions within a Cayley-Klein framework, holding simultaneously for all these nine spaces, whose cycles (including geodesics and circles) are explicitly characterized in a new way. The corresponding cycle-preserving symmetries, which give rise to (Moebius-like) conformal Lie algebras, together with their differential realizations are then deduced without having to resort to solving the conformal Killing equations. We show that each set of three spaces with the same signature type and any curvature have isomorphic conformal algebras; these are related through an apparently new conformal duality. Laplace and wave-type differential equations with conformal algebra symmetry are finally constructed. (author)
Conformal Anomalies in Hydrodynamics
Eling, Christopher; Theisen, Stefan; Yankielowicz, Shimon
2013-01-01
We study the effect of conformal anomalies on the hydrodynamic description of conformal field theories in four spacetime dimensions. We consider equilibrium curved backgrounds characterized by a time-like Killing vector and construct a local low energy effective action that captures the conformal anomalies. Using as a special background the Rindler spacetime we derive a formula for the effect of the anomaly on the hydrodynamic pressure.
Galilean Conformal Electrodynamics
Bagchi, Arjun; Basu, Rudranil; Mehra, Aditya
2014-01-01
Maxwell’s Electrodynamics admits two distinct Galilean limits called the Electric and Magnetic limits. We show that the equations of motion in both these limits are invariant under the Galilean Conformal Algebra in D = 4, thereby exhibiting non-relativistic conformal symmetries. Remarkably, the symmetries are infinite dimensional and thus Galilean Electrodynamics give us the first example of an infinitely extended Galilean Conformal Field Theory in D > 2. We examine details of the theory by l...
Juvenile Delinquency and Conformism
Patacchini, Eleonora; Zenou, Yves
2010-01-01
This paper studies whether conformism behavior affects individual outcomes in crime. We present a social network model of peer effects with ex-ante heterogeneous agents and show how conformism and deterrence affect criminal activities. We then bring the model to the data by using a very detailed dataset of adolescent friendship networks. A novel social network-based empirical strategy allows us to identify peer effects for different types of crimes. We find that conformity plays an important ...
Galilean Conformal Electrodynamics
Bagchi, Arjun; Mehra, Aditya
2014-01-01
Maxwell's Electrodynamics admits two distinct Galilean limits called the Electric and Magnetic limits. We show that the equations of motion in both these limits are invariant under the Galilean Conformal Algebra in D=4, thereby exhibiting non-relativistic conformal symmetries. Remarkably, the symmetries are infinite dimensional and thus Galilean Electrodynamics give us the first example of an infinitely extended Galilean Conformal Field Theory in D>2. We examine details of the theory by looking at purely non-relativistic conformal methods and also use input from the limit of the relativistic theory.
Galilean conformal electrodynamics
Bagchi, Arjun; Basu, Rudranil; Mehra, Aditya
2014-11-01
Maxwell's Electrodynamics admits two distinct Galilean limits called the Electric and Magnetic limits. We show that the equations of motion in both these limits are invariant under the Galilean Conformal Algebra in D = 4, thereby exhibiting non-relativistic conformal symmetries. Remarkably, the symmetries are infinite dimensional and thus Galilean Electrodynamics give us the first example of an infinitely extended Galilean Conformal Field Theory in D > 2. We examine details of the theory by looking at purely non-relativistic conformal methods and also use input from the limit of the relativistic theory.
Sornette, Didier
2010-01-01
This chapter first presents a rather personal view of some different aspects of predictability, going in crescendo from simple linear systems to high-dimensional nonlinear systems with stochastic forcing, which exhibit emergent properties such as phase transitions and regime shifts. Then, a detailed correspondence between the phenomenology of earthquakes, financial crashes and epileptic seizures is offered. The presented statistical evidence provides the substance of a general phase diagram for understanding the many facets of the spatio-temporal organization of these systems. A key insight is to organize the evidence and mechanisms in terms of two summarizing measures: (i) amplitude of disorder or heterogeneity in the system and (ii) level of coupling or interaction strength among the system's components. On the basis of the recently identified remarkable correspondence between earthquakes and seizures, we present detailed information on a class of stochastic point processes that has been found to be particu...
Conformal Bootstrap in Embedding Space
Fortin, Jean-François
2016-01-01
It is shown how to obtain conformal blocks from embedding space with the help of the operator product expansion. The minimal conformal block originates from scalar exchange in a four-point correlation functions of four scalars. All remaining conformal blocks are simple derivatives of the minimal conformal block. With the help of the orthogonality properties of the conformal blocks, the analytic conformal bootstrap can be implemented directly in embedding space, leading to a Jacobi-like definition of conformal field theories.
Conformal bootstrap in embedding space
Fortin, Jean-François; Skiba, Witold
2016-05-01
It is shown how to obtain conformal blocks from embedding space with the help of the operator product expansion. The minimal conformal block originates from scalar exchange in a four-point correlation function of four scalars. All remaining conformal blocks are simple derivatives of the minimal conformal block. With the help of the orthogonality properties of the conformal blocks, the analytic conformal bootstrap can be implemented directly in embedding space, leading to a Jacobi-like definition of conformal field theories.
The conforming brain and deontological resolve.
Directory of Open Access Journals (Sweden)
Melanie Pincus
Full Text Available Our personal values are subject to forces of social influence. Deontological resolve captures how strongly one relies on absolute rules of right and wrong in the representation of one's personal values and may predict willingness to modify one's values in the presence of social influence. Using fMRI, we found that a neurobiological metric for deontological resolve based on relative activity in the ventrolateral prefrontal cortex (VLPFC during the passive processing of sacred values predicted individual differences in conformity. Individuals with stronger deontological resolve, as measured by greater VLPFC activity, displayed lower levels of conformity. We also tested whether responsiveness to social reward, as measured by ventral striatal activity during social feedback, predicted variability in conformist behavior across individuals but found no significant relationship. From these results we conclude that unwillingness to conform to others' values is associated with a strong neurobiological representation of social rules.
Protein local conformations arise from a mixture of Gaussian distributions
Indian Academy of Sciences (India)
Ashish V Tendulkar; Babatunde Ogunnaike; Pramod P Wangikar
2007-08-01
The classical approaches for protein structure prediction rely either on homology of the protein sequence with a template structure or on ab initio calculations for energy minimization. These methods suffer from disadvantages such as the lack of availability of homologous template structures or intractably large conformational search space, respectively. The recently proposed fragment library based approaches first predict the local structures, which can be used in conjunction with the classical approaches of protein structure prediction. The accuracy of the predictions is dependent on the quality of the fragment library. In this work, we have constructed a library of local conformation classes purely based on geometric similarity. The local conformations are represented using Geometric Invariants, properties that remain unchanged under transformations such as translation and rotation, followed by dimension reduction via principal component analysis. The local conformations are then modeled as a mixture of Gaussian probability distribution functions (PDF). Each one of the Gaussian PDF’s corresponds to a conformational class with the centroid representing the average structure of that class. We find 46 classes when we use an octapeptide as a unit of local conformation. The protein 3-D structure can now be described as a sequence of local conformational classes. Further, it was of interest to see whether the local conformations can be predicted from the amino acid sequences. To that end, we have analyzed the correlation between sequence features and the conformational classes.
An automated efficient conformation search of L-serine by the scaled hypersphere search method
Kishimoto, Naoki; Harayama, Manami; Ohno, Koichi
2016-05-01
Stable conformers of L-serine were automatically explored by applications of the scaled hypersphere search (SHS) method to equilibrium structures maintaining the chemical bond skeletons of serine. Energy barriers for conformational changes of L-serine were estimated from the heights of obtained transition structures. Zero-point-corrected electronic energies and Gibbs free energies of the 24 lowest energy conformers and 21 transition structures were calculated at 100, 298, and 400 K by a composite quantum chemistry method (Gaussian-4). Relative populations of 24 conformers including nine new conformers were calculated from the Gibbs energies assuming thermal equilibrium.
Conformal invariance in supergravity
International Nuclear Information System (INIS)
In this thesis the author explains the role of conformal invariance in supergravity. He presents the complete structure of extended conformal supergravity for N <= 4. The outline of this work is as follows. In chapter 2 he briefly summarizes the essential properties of supersymmetry and supergravity and indicates the use of conformal invariance in supergravity. The idea that the introduction of additional symmetry transformations can make clear the structure of a field theory is not reserved to supergravity only. By means of some simple examples it is shown in chapter 3 how one can always introduce additional gauge transformations in a theory of massive vector fields. Moreover it is shown how the gauge invariant formulation sometimes explains the quantum mechanical properties of the theory. In chapter 4 the author defines the conformal transformations and summarizes their main properties. He explains how these conformal transformations can be used to analyse the structure of gravity. The supersymmetric extension of these results is discussed in chapter 5. Here he describes as an example how N=1 supergravity can be reformulated in a conformally-invariant way. He also shows that beyond N=1 the gauge fields of the superconformal symmetries do not constitute an off-shell field representation of extended conformal supergravity. Therefore, in chapter 6, a systematic method to construct the off-shell formulation of all extended conformal supergravity theories with N <= 4 is developed. As an example he uses this method to construct N=1 conformal supergravity. Finally, in chapter 7 N=4 conformal supergravity is discussed. (Auth.)
Conformational elasticity theory of chain molecules
Institute of Scientific and Technical Information of China (English)
YANG; Xiaozhen
2001-01-01
This paper develops a conformational elasticity theory of chain molecules, which is based on three key points: (ⅰ) the molecular model is the rotational isomeric state (RIS) model; (ⅱ) the conformational distribution function of a chain molecule is described by a function of two variables, the end-to-end distance of a chain conformation and the energy of the conformation; (ⅲ) the rule of changes in the chain conformational states during deformation is that a number of chain conformations would vanish. The ideal deformation behavior calculated by the theory shows that the change in chain conformations is physically able to make the upward curvature of the stress-strain curve at the large-scale deformation of natural rubber. With the theory, different deformation behaviors between polymers with different chemical structures can be described, the energy term of the stress in the deformations can be predicted, and for natural rubber the fraction of the energy term is around 13%, coinciding with the experimental results.
PubChem3D: Conformer generation
Directory of Open Access Journals (Sweden)
Bolton Evan E
2011-01-01
lower energy windows. Overall average accuracy of reproduction of bioactive conformations was remarkably linear with respect to both non-hydrogen atom count ("size" and effective rotor count ("flexibility". Using these as independent variables, a regression equation was developed to predict the RMSD accuracy of a theoretical ensemble to reproduce bioactive conformations. The equation was modified to give a minimum RMSD conformer sampling value to help ensure that 90% of the sampled theoretical models should contain at least one conformer within the RMSD sampling value to a "bioactive" conformation. Conclusion Optimal parameters for conformer generation using OMEGA were explored and determined. An equation was developed that provides an RMSD sampling value to use that is based on the relative accuracy to reproduce bioactive conformations. The optimal conformer generation parameters and RMSD sampling values determined are used by the PubChem3D project to generate theoretical conformer models.
Face-Based Automatic Personality Perception
Al Moubayed, Noura; Vazquez-Alvarez, Yolanda; McKay, Alex; Vinciarelli, Alessandro
2014-01-01
Automatic Personality Perception is the task of automatically predicting the personality traits people attribute to others. This work presents experiments where such a task is performed by mapping facial appearance into the Big-Five personality traits, namely Openness, Conscientiousness, Extraversion, Agreeableness and Neuroticism. The experiments are performed over the pictures of the FERET corpus, originally collected for biometrics purposes, for a total of 829 individuals. The results show...
Conformal Predictions in Multimedia Pattern Recognition
Nallure Balasubramanian, Vineeth
2010-01-01
The fields of pattern recognition and machine learning are on a fundamental quest to design systems that can learn the way humans do. One important aspect of human intelligence that has so far not been given sufficient attention is the capability of humans to express when they are certain about a decision, or when they are not. Machine learning…
Objective interpretation as conforming interpretation
Directory of Open Access Journals (Sweden)
Lidka Rodak
2011-12-01
Full Text Available The practical discourse willingly uses the formula of “objective interpretation”, with no regards to its controversial nature that has been discussed in literature.The main aim of the article is to investigate what “objective interpretation” could mean and how it could be understood in the practical discourse, focusing on the understanding offered by judicature.The thesis of the article is that objective interpretation, as identified with textualists’ position, is not possible to uphold, and should be rather linked with conforming interpretation. And what this actually implies is that it is not the virtue of certainty and predictability – which are usually associated with objectivity- but coherence that makes the foundation of applicability of objectivity in law.What could be observed from the analyses, is that both the phenomenon of conforming interpretation and objective interpretation play the role of arguments in the interpretive discourse, arguments that provide justification that interpretation is not arbitrary or subjective. With regards to the important part of the ideology of legal application which is the conviction that decisions should be taken on the basis of law in order to exclude arbitrariness, objective interpretation could be read as a question “what kind of authority “supports” certain interpretation”? that is almost never free of judicial creativity and judicial activism.One can say that, objective and conforming interpretation are just another arguments used in legal discourse.
Snapshots of Conformal Field Theory
Wendland, Katrin
2014-01-01
In snapshots, this exposition introduces conformal field theory, with a focus on those perspectives that are relevant for interpreting superconformal field theory by Calabi-Yau geometry. It includes a detailed discussion of the elliptic genus as an invariant which certain superconformal field theories share with the Calabi-Yau manifolds. K3 theories are (re)viewed as prime examples of superconformal field theories where geometric interpretations are known. A final snapshot addresses the K3-related Mathieu Moonshine phenomena, where a lead role is predicted for the chiral de Rham complex.
Wang, Qi; Pang, Yuan-Ping
2007-01-01
The energy minimization of a small molecule alone does not automatically stop at a local minimum of the potential energy surface of the molecule if the minimum is shallow, thus leading to folding of the molecule and consequently hampering the generation of the bound conformation of a guest in the absence of its host. This questions the practicality of virtual screening methods that use conformations at local minima of their potential energy surfaces (local minimum conformations) as potential ...
Conformal Symmetry and Unification
Pawlowski, M
1998-01-01
The Weyl-Weinberg-Salam model is presented. It is based on the local conformal gauge symmetry. The model identifies the Higgs scalar field in SM with the Penrose-Chernikov-Tagirov scalar field of the conformal theory of gravity. Higgs mechanism for generation of particle masses is replaced by the originated in Weyl's ideas conformal gauge scale fixing. Scalar field is no longer a dynamical field of the model and does not lead to quantum particle-like excitations that could be observed in HE experiments. Cosmological constant is naturally generated by the scalar quadric term. The model admits Weyl vector bosons that can mix with photon and weak bosons.
Conformation therapy methods and systems
International Nuclear Information System (INIS)
In conformation therapy the treated volume is shaped in 3-D to match the target volume. The dose distribution in and around the target volume is carefully controlled using automated equipment and procedures. A large aperture CT scanner is needed to scan the patient in the treatment position. A powerful and intelligent treatment planning system/simulator (TPSS) is required to optimize and display the dose distribution and program or 'choreograph' the treatment unit. Sophisticated algorithms are required to automatically combine patient data, treatment prescription and machine characteristics to find a suitable plan. A computer controlled treatment unit (CCTU) is required which can receive and execute the treatment plan. The CT scanner, TPSS and treatment machine must be mutually compatible for data transfer and planning. Suitable computer controlled treatment machines are already commercially available or under development. Considerable efforts are being made by hospitals and manufacturers to develop suitable TPSSs. Basic conformation therapy techniques employ cross-fire techniques with moving or stationary beams to irradiate the target volume 'slice-by-slice' or 'field-by-field'. More sophisticated methods combine these procedures to decrease treatment time and improve dose distribution. Each field is shaped using a multi-segment collimator (MSC) or by a scanning procedure. MSCs have the width defining blades split into a series of computer controlled segments. The MSC replaces the conventional collimator or is used as a detachable accessory. Scanning systems use conventional collimators with a moving couch (tracking systems) or collimators with individually controlled blades. The dose distribution over each field is controlled by a scanning process. Scanning is achieved by couch and/or collimator movement or by deflecting the electron beam using electromagnets before the X-ray target (the latter process may also be used for field shaping). Multi-segment collimator
Conformal Invariant Teleparallel Cosmology
Momeni, Davood
2014-01-01
Teleparallel gravities revisited under conformal transformations. We find several kinds of the Lagrangians, all invariant under conformal transformation. Motivated by observational data,we investigate FRW cosmological solutions in the vacuum. To include the matter fields,we mention that we have few possibilities for our matter Lagrangian to respect the conformal symmetry. FRW equations,have been derived in terms of the effective energy and pressure components. In vacuum we find an exact solution for Hubble parameter which is compatible with the observational data but it is valid only in the range of $z\\ge 0.07$. Scalar torsion models in which we have the extra scalar field is examined under FRW spacetime. We introduce the potential term $\\frac{1}{4!}\\mu\\phi^4$ as the minimal self interaction with conformal symmetry.
Kliuev, S A
2006-01-01
The geometric and energetic parameters of most stable conformations of carnosine were calculated by the semiempirical guantum-chemical method PM3. The carnosine-water-zinc (II) clusters were simulated. PMID:16909845
Andrzejewski, K
2015-01-01
The quantum mechanics of one degree of freedom exhibiting the exact conformal SL(2,R) symmetry is presented. The starting point is the classification of the unitary irreducible representations of the SL(2,R) group (or, to some extent, its universal covering). The coordinate representation is defined as the basis diagonalizing the special conformal generator K. It is indicated how the resulting theory emerges from the canonical/geometric quantization of the Hamiltonian dynamics on the relevant coadjoint orbits.
Quantum massive conformal gravity
Faria, F. F.
2016-01-01
We first find the linear approximation of the second plus fourth order derivative massive conformal gravity action. Then we reduce the linearized action to separated second order derivative terms, which allows us to quantize the theory by using the standard first order canonical quantization method. It is shown that quantum massive conformal gravity is renormalizable but has ghost states. A possible decoupling of these ghost states at high energies is discussed.
Quantum massive conformal gravity
Faria, F. F.
2016-04-01
We first find the linear approximation of the second plus fourth order derivative massive conformal gravity action. Then we reduce the linearized action to separated second order derivative terms, which allows us to quantize the theory by using the standard first order canonical quantization method. It is shown that quantum massive conformal gravity is renormalizable but has ghost states. A possible decoupling of these ghost states at high energies is discussed.
Quantum massive conformal gravity
International Nuclear Information System (INIS)
We first find the linear approximation of the second plus fourth order derivative massive conformal gravity action. Then we reduce the linearized action to separated second order derivative terms, which allows us to quantize the theory by using the standard first order canonical quantization method. It is shown that quantum massive conformal gravity is renormalizable but has ghost states. A possible decoupling of these ghost states at high energies is discussed. (orig.)
A probabilistic model of RNA conformational space
DEFF Research Database (Denmark)
Frellsen, Jes; Moltke, Ida; Thiim, Martin; Mardia, Kanti; Ferkinghoff-Borg, Jesper; Hamelryck, Thomas
2009-01-01
The increasing importance of non-coding RNA in biology and medicine has led to a growing interest in the problem of RNA 3-D structure prediction. As is the case for proteins, RNA 3-D structure prediction methods require two key ingredients: an accurate energy function and a conformational sampling...... procedure. Both are only partly solved problems. Here, we focus on the problem of conformational sampling. The current state of the art solution is based on fragment assembly methods, which construct plausible conformations by stringing together short fragments obtained from experimental structures. However......, the discrete nature of the fragments necessitates the use of carefully tuned, unphysical energy functions, and their non-probabilistic nature impairs unbiased sampling. We offer a solution to the sampling problem that removes these important limitations: a probabilistic model of RNA structure that...
DEFF Research Database (Denmark)
Pøhlsgaard, Jacob; Harpsøe, Kasper; Jørgensen, Flemming Steen;
2012-01-01
The binding affinity of a drug like molecule depends among other things on the availability of the bioactive conformation. If the bioactive conformation has a significantly higher energy than the global minimum energy conformation, the molecule is unlikely to bind to its target. Determination of ...... zwitterionic compounds generated by conformational analysis with modified electrostatics are good approximations of the conformational distributions predicted by experimental data and in simulated annealing performed in explicit solvent....
Long, Fan; Ganesh, Vijay; Carbin, Michael James; Sidiroglou, Stelios; Rinard, Martin
2012-01-01
We present a novel technique, automatic input rectification, and a prototype implementation, SOAP. SOAP learns a set of constraints characterizing typical inputs that an application is highly likely to process correctly. When given an atypical input that does not satisfy these constraints, SOAP automatically rectifies the input (i.e., changes the input so that it satisfies the learned constraints). The goal is to automatically convert potentially dangerous inputs into typical inputs that the ...
Directory of Open Access Journals (Sweden)
Narcis Eduard Mitu
2013-11-01
Full Text Available Policies or institutions (built into an economic system that automatically tend to dampen economic cycle fluctuations in income, employment, etc., without direct government intervention. For example, in boom times, progressive income tax automatically reduces money supply as incomes and spendings rise. Similarly, in recessionary times, payment of unemployment benefits injects more money in the system and stimulates demand. Also called automatic stabilizers or built-in stabilizers.
Automatic mapping of monitoring data
DEFF Research Database (Denmark)
Lophaven, Søren; Nielsen, Hans Bruun; Søndergaard, Jacob
2005-01-01
This paper presents an approach, based on universal kriging, for automatic mapping of monitoring data. The performance of the mapping approach is tested on two data-sets containing daily mean gamma dose rates in Germany reported by means of the national automatic monitoring network (IMIS). In the...... second dataset an accidental release of radioactivity in the environment was simulated in the South-Western corner of the monitored area. The approach has a tendency to smooth the actual data values, and therefore it underestimates extreme values, as seen in the second dataset. However, it is capable of...... identifying a release of radioactivity provided that the number of sampling locations is sufficiently high. Consequently, we believe that a combination of applying the presented mapping approach and the physical knowledge of the transport processes of radioactivity should be used to predict the extreme values...
The Biological Bases of Conformity
Directory of Open Access Journals (Sweden)
ThomasJoshau HenryMorgan
2012-06-01
Full Text Available Humans are characterized by an extreme dependence on culturally transmitted information and recent formal theory predicts that natural selection should favour adaptive learning strategies that facilitate effective use of social information in decision making. One strategy that has attracted particular attention is conformist transmission, defined as the disproportionately likely adoption of the most common variant. Conformity has historically been emphasized as significant in the social psychology literature, and recently there have also been reports of conformist behaviour in nonhuman animals. However, mathematical analyses differ in how important and widespread they expect conformity to be, and relevant experimental work is scarce, and generates findings that are both mutually contradictory and inconsistent with the predictions of the models. We review the relevant literature considering the causation, function, history and ontogeny of conformity and describe a computer-based experiment on human subjects that we carried out in order to resolve ambiguities. We found that only when many demonstrators were available and subjects were uncertain was subject behaviour conformist. A further analysis found that the underlying response to social information alone was generally conformist. Thus, our data are consistent with a conformist use of social information, but as subject’s behaviour is the result of both social and asocial influences, the resultant behaviour may not be conformist. We end by relating these findings to an embryonic cognitive neuroscience literature that has recently begun to explore the neural bases of social learning. Here conformist transmission may be a particularly useful case study, not only because there are well-defined and tractable opportunities to characterize the biological underpinnings of this form of social learning, but also because early findings imply that humans may possess specific cognitive adaptations for
Automatic differentiation bibliography
Energy Technology Data Exchange (ETDEWEB)
Corliss, G.F. (comp.)
1992-07-01
This is a bibliography of work related to automatic differentiation. Automatic differentiation is a technique for the fast, accurate propagation of derivative values using the chain rule. It is neither symbolic nor numeric. Automatic differentiation is a fundamental tool for scientific computation, with applications in optimization, nonlinear equations, nonlinear least squares approximation, stiff ordinary differential equation, partial differential equations, continuation methods, and sensitivity analysis. This report is an updated version of the bibliography which originally appeared in Automatic Differentiation of Algorithms: Theory, Implementation, and Application.
Controlling complex networks with conformity behavior
Wang, Xu-Wen; Nie, Sen; Wang, Wen-Xu; Wang, Bing-Hong
2015-09-01
Controlling complex networks accompanied by common conformity behavior is a fundamental problem in social and physical science. Conformity behavior that individuals tend to follow the majority in their neighborhood is common in human society and animal communities. Despite recent progress in understanding controllability of complex networks, the existent controllability theories cannot be directly applied to networks associated with conformity. Here we propose a simple model to incorporate conformity-based decision making into the evolution of a network system, which allows us to employ the exact controllability theory to explore the controllability of such systems. We offer rigorous theoretical results of controllability for representative regular networks. We also explore real networks in different fields and some typical model networks, finding some interesting results that are different from the predictions of structural and exact controllability theory in the absence of conformity. We finally present an example of steering a real social network to some target states to further validate our controllability theory and tools. Our work offers a more realistic understanding of network controllability with conformity behavior and can have potential applications in networked evolutionary games, opinion dynamics and many other complex networked systems.
Universal hydrodynamics of non-conformal branes
Kanitscheider, Ingmar
2009-01-01
We examine the hydrodynamic limit of non-conformal branes using the recently developed precise holographic dictionary. We first streamline the discussion of holography for backgrounds that asymptote locally to non-conformal brane solutions by showing that all such solutions can be obtained from higher dimensional asymptotically locally AdS solutions by suitable dimensional reduction and continuation in the dimension. As a consequence, many holographic results for such backgrounds follow from the corresponding results of the Asymptotically AdS case. In particular, the hydrodynamics of non-conformal branes is fully determined in terms of conformal hydrodynamics. Using previous results on the latter we predict the form of the non-conformal hydrodynamic stress tensor to second order in derivatives. Furthermore we show that the ratio between bulk and shear viscosity is fixed by the generalized conformal structure to be \\zeta/\\eta = 2(1/(d-1) - c_s^2), where c_s is the speed of sound in the fluid.
Ruys, Kirsten I; Spears, Russell; Gordijn, Ernestine H; de Vries, Nanne K
2007-08-01
The aim of the present research was to investigate whether unconsciously presented affective information may cause opposite evaluative responses depending on what social category the information originates from. We argue that automatic comparison processes between the self and the unconscious affective information produce this evaluative contrast effect. Consistent with research on automatic behaviour, we propose that when an intergroup context is activated, an automatic comparison to the social self may determine the automatic evaluative responses, at least for highly visible categories (e.g. sex, ethnicity). Contrary to previous research on evaluative priming, we predict automatic contrastive responses to affective information originating from an outgroup category such that the evaluative response to neutral targets is opposite to the valence of the suboptimal primes. Two studies using different intergroup contexts provide support for our hypotheses. PMID:17705936
Directory of Open Access Journals (Sweden)
Qi Wang
Full Text Available The energy minimization of a small molecule alone does not automatically stop at a local minimum of the potential energy surface of the molecule if the minimum is shallow, thus leading to folding of the molecule and consequently hampering the generation of the bound conformation of a guest in the absence of its host. This questions the practicality of virtual screening methods that use conformations at local minima of their potential energy surfaces (local minimum conformations as potential bound conformations. Here we report a normal-mode-analysis-monitored energy minimization (NEM procedure that generates local minimum conformations as potential bound conformations. Of 22 selected guest-host complex crystal structures with guest structures possessing up to four rotatable bonds, all complexes were reproduced, with guest mass-weighted root mean square deviations of <1.0 A, through docking with the NEM-generated guest local minimum conformations. An analysis of the potential energies of these local minimum conformations showed that 22 (100%, 18 (82%, 16 (73%, and 12 (55% of the 22 guest bound conformations in the crystal structures had conformational strain energies of less than or equal to 3.8, 2.0, 0.6, and 0.0 kcal/mol, respectively. These results suggest that (1 the NEM procedure can generate small-molecule bound conformations, and (2 guests adopt low-strain-energy conformations for complexation, thus supporting the virtual screening methods that use local minimum conformations.
Conformal Invariance of the 3D Self-Avoiding Walk
Kennedy, Tom
2013-10-01
We show that if the three-dimensional self-avoiding walk (SAW) is conformally invariant, then one can compute the hitting densities for the SAW in a half-space and in a sphere. We test these predictions by Monte Carlo simulations and find excellent agreement, thus providing evidence that the SAW is conformally invariant in three dimensions.
Killing tensors and conformal Killing tensors from conformal Killing vectors
International Nuclear Information System (INIS)
Koutras has proposed some methods to construct reducible proper conformal Killing tensors and Killing tensors (which are, in general, irreducible) when a pair of orthogonal conformal Killing vectors exist in a given space. We give the completely general result demonstrating that this severe restriction of orthogonality is unnecessary. In addition, we correct and extend some results concerning Killing tensors constructed from a single conformal Killing vector. A number of examples demonstrate that it is possible to construct a much larger class of reducible proper conformal Killing tensors and Killing tensors than permitted by the Koutras algorithms. In particular, by showing that all conformal Killing tensors are reducible in conformally flat spaces, we have a method of constructing all conformal Killing tensors, and hence all the Killing tensors (which will in general be irreducible) of conformally flat spaces using their conformal Killing vectors
Game Theory and Social Psychology: Conformity Games
Alessio, Danielle; Kilgour, D. Marc
2011-11-01
Game models can contribute to understanding of how social biases and pressures to conform can lead to puzzling behaviour in social groups. A model of the psychological biases false uniqueness and false consensus is set out. The model predicts the phenomenon of pluralistic ignorance, which is well-studied in social psychology, showing how it arises as a result of the prevalence of false uniqueness and the desire to conform. An efficient method is developed for finding Nash equilibria of the model under certain restrictions.
Charged conformal Killing spinors
International Nuclear Information System (INIS)
We study the twistor equation on pseudo-Riemannian Spinc-manifolds whose solutions we call charged conformal Killing spinors (CCKSs). We derive several integrability conditions for the existence of CCKS and study their relations to spinor bilinears. A construction principle for Lorentzian manifolds admitting CCKS with nontrivial charge starting from CR-geometry is presented. We obtain a partial classification result in the Lorentzian case under the additional assumption that the associated Dirac current is normal conformal and complete the classification of manifolds admitting CCKS in all dimensions and signatures ≤5 which has recently been initiated in the study of supersymmetric field theories on curved space
MARZ: Manual and automatic redshifting software
Hinton, S. R.; Davis, Tamara M.; Lidman, C.; Glazebrook, K.; Lewis, G. F.
2016-04-01
The Australian Dark Energy Survey (OzDES) is a 100-night spectroscopic survey underway on the Anglo-Australian Telescope using the fibre-fed 2-degree-field (2dF) spectrograph. We have developed a new redshifting application MARZ with greater usability, flexibility, and the capacity to analyse a wider range of object types than the RUNZ software package previously used for redshifting spectra from 2dF. MARZ is an open-source, client-based, Javascript web-application which provides an intuitive interface and powerful automatic matching capabilities on spectra generated from the AAOmega spectrograph to produce high quality spectroscopic redshift measurements. The software can be run interactively or via the command line, and is easily adaptable to other instruments and pipelines if conforming to the current FITS file standard is not possible. Behind the scenes, a modified version of the AUTOZ cross-correlation algorithm is used to match input spectra against a variety of stellar and galaxy templates, and automatic matching performance for OzDES spectra has increased from 54% (RUNZ) to 91% (MARZ). Spectra not matched correctly by the automatic algorithm can be easily redshifted manually by cycling automatic results, manual template comparison, or marking spectral features.
International Nuclear Information System (INIS)
Purpose: The main purpose of this work was to try to elucidate why, despite excellent rectal dose-volume histograms (DVHs), some patients treated for prostate cancer exhibit late rectal bleeding (LRB) and others with poor DVHs do not. Thirty-five genes involved in DNA repair/radiation response were analyzed in patients accrued in the AIROPROS 0101 trial, which investigated the correlation between LRB and dosimetric parameters. Methods and Materials: Thirty patients undergoing conformal radiotherapy with prescription doses higher than 70 Gy (minimum follow-up, 48 months) were selected: 10 patients in the low-risk group (rectal DVH with the percent volume of rectum receiving more than 70 Gy [V70Gy] 25% and V50Gy > 60%) with G2-G3 LRB, and 10 patients in the high-risk group with no toxicity. Quantitative reverse-transcriptase polymerase chain reaction was performed on RNA from lymphoblastoid cell lines obtained from Epstein-Barr virus-immortalized peripheral-blood mononucleated cells and on peripheral blood mononucleated cells. Interexpression levels were compared by using the Kruskal-Wallis test. Results: Intergroup comparison showed many constitutive differences: nine genes were significantly down-regulated in the low-risk bleeder group vs. the high-risk bleeder and high-risk nonbleeder groups: AKR1B1 (p = 0.019), BAZ1B (p = 0.042), LSM7 (p = 0.0016), MRPL23 (p = 0.015), NUDT1 (p = 0.0031), PSMB4 (p = 0.079), PSMD1 (p = 0.062), SEC22L1 (p = 0.040), and UBB (p = 0.018). Four genes were significantly upregulated in the high-risk nonbleeder group than in the other groups: DDX17 (p = 0.048), DRAP1 (p = 0.0025), RAD23 (p = 0.015), and SRF (p = 0.024). For most of these genes, it was possible to establish a cut-off value that correctly classified most patients. Conclusions: The predictive value of sensitivity and resistance to LRB of the genes identified by the study is promising and should be tested in a larger data set.
A dose computation algorithm used in MLC conformal treatment
International Nuclear Information System (INIS)
A dose calculation algorithm for MLC based conformal radiotherapy is described in this paper. The algorithm is formulated by the coordinate of MLC leaves. Verification on the algorithm is made by comparing the dose distributions generated by this algorithm with that generated by a Differential Convolution Superposition algorithm for various regular and irregular fields. The results demonstrate that the present algorithm has suitable accuracy and high computational efficiency, thus it could be useful for the treatment planning process in MLC based conformal radiotherapy, where the workload for interactively or automatically designing the shapes of MLC is heavy. (authors)
Extende conformal field theories
Energy Technology Data Exchange (ETDEWEB)
Taormina, A. (Chicago Univ., IL (USA). Enrico Fermi Inst.)
1990-08-01
Some extended conformal field theories are briefly reviewed. They illustrate how non minimal models of the Virasoro algebra (c{ge}1) can become minimal with respect to a larger algebra. The accent is put on N-extended superconformal algebras, which are relevant in superstring compactification. (orig.).
Extended conformal field theories
Taormina, Anne
1990-08-01
Some extended conformal field theories are briefly reviewed. They illustrate how non minimal models of the Virasoro algebra (c≥1) can become minimal with respect to a larger algebra. The accent is put on N-extended superconformal algebras, which are relevant in superstring compactification.
International Nuclear Information System (INIS)
It is shown that the information loss/recovery theorem based on the ADS/CFT correspondence is not consistent with the stability of the Schwarzschild or Reissner-Nordstrom black holes. Nonetheless, the conformal invariance of Yang-Mills theory points to new relativity principle compatible with quantum unitarity near those black holes
Digital library conformance checklist
Ross, Seamus; CASTELLI, Donatella; Ioannidis, Yannis; Vullo, Giuseppina; Innocenti, Perla; Candela, Leonardo; Nika, Ana; El Raheb, Katerina; Katifori, Akrivi
2011-01-01
This booklet is abstracted and abridged from "The Digital Library Reference Model"- D3.2 DL.org Project Deliverable. The check list is designed to verify whether or not a digital library conforms to the Digital Library Reference Model.
Sampling Realistic Protein Conformations Using Local Structural Bias
DEFF Research Database (Denmark)
Hamelryck, Thomas Wim; Kent, John T.; Krogh, A.
2006-01-01
The prediction of protein structure from sequence remains a major unsolved problem in biology. The most successful protein structure prediction methods make use of a divide-and-conquer strategy to attack the problem: a conformational sampling method generates plausible candidate structures, which......-reaching implications for protein structure prediction, determination, simulation, and design....
Galilean Conformal and Superconformal Symmetries
,
2011-01-01
Firstly we discuss briefly three different algebras named as nonrelativistic (NR) conformal: Schroedinger, Galilean conformal and infinite algebra of local NR conformal isometries. Further we shall consider in some detail Galilean conformal algebra (GCA) obtained in the limit c equal to infinity from relativistic conformal algebra O(d+1,2) (d - number of space dimensions). Two different contraction limits providing GCA and some recently considered realizations will be briefly discussed. Finally by considering NR contraction of D=4 superconformal algebra the Galilei conformal superalgebra (GCSA) is obtained, in the formulation using complex Weyl supercharges.
Conformal vector fields in symmetric and conformal symmetric spaces
Directory of Open Access Journals (Sweden)
Ramesh Sharma
1989-03-01
Full Text Available Consequences of the existence of conformal vector fields in (locally symmetric and conformal symmetric spaces, have been obtained. An attempt has been made for a physical interpretation of the consequences in the framework of general relativity.
Automatic Implantable Cardiac Defibrillator
Full Text Available Automatic Implantable Cardiac Defibrillator February 19, 2009 Halifax Health Medical Center, Daytona Beach, FL Welcome to Halifax Health Daytona Beach, Florida. Over the next hour you' ...
Automatic Payroll Deposit System.
Davidson, D. B.
1979-01-01
The Automatic Payroll Deposit System in Yakima, Washington's Public School District No. 7, directly transmits each employee's salary amount for each pay period to a bank or other financial institution. (Author/MLF)
Automatic Arabic Text Classification
Al-harbi, S; Almuhareb, A.; Al-Thubaity , A; Khorsheed, M. S.; Al-Rajeh, A.
2008-01-01
Automated document classification is an important text mining task especially with the rapid growth of the number of online documents present in Arabic language. Text classification aims to automatically assign the text to a predefined category based on linguistic features. Such a process has different useful applications including, but not restricted to, e-mail spam detection, web page content filtering, and automatic message routing. This paper presents the results of experiments on documen...
A Conformal Extension Theorem based on Null Conformal Geodesics
Lübbe, Christian
2008-01-01
In this article we describe the formulation of null geodesics as null conformal geodesics and their description in the tractor formalism. A conformal extension theorem through an isotropic singularity is proven by requiring the boundedness of the tractor curvature and its derivatives to sufficient order along a congruence of null conformal geodesic. This article extends earlier work by Tod and Luebbe.
CONFORMANCE IMPROVEMENT USING GELS
Energy Technology Data Exchange (ETDEWEB)
Randall S. Seright
2004-09-30
This report describes work performed during the third and final year of the project, ''Conformance Improvement Using Gels.'' Corefloods revealed throughput dependencies of permeability reduction by polymers and gels that were much more prolonged during oil flow than water flow. This behavior was explained using simple mobility ratio arguments. A model was developed that quantitatively fits the results and predicts ''clean up'' times for oil productivity when production wells are returned to service after application of a polymer or gel treatment. X-ray computed microtomography studies of gels in strongly water-wet Berea sandstone and strongly oil-wet porous polyethylene suggested that oil penetration through gel-filled pores occurs by a gel-dehydration mechanism, rather than gel-ripping or gel-displacement mechanisms. In contrast, analysis of data from the University of Kansas suggests that the gel-ripping or displacement mechanisms are more important in more permeable, strongly water-wet sandpacks. These findings help to explain why aqueous gels can reduce permeability to water more than to oil under different conditions. Since cement is the most commonly used material for water shutoff, we considered when gels are preferred over cements. Our analysis and experimental results indicated that cement cannot be expected to completely fill (top to bottom) a vertical fracture of any width, except near the wellbore. For vertical fractures with apertures less than 4 mm, the cement slurry will simply not penetrate very far into the fracture. For vertical fractures with apertures greater than 4 mm, the slurry may penetrate a substantial distance into the bottom part of the fracture. However, except near the wellbore, the upper part of the fracture will remain open due to gravity segregation. We compared various approaches to plugging fractures using gels, including (1) varying polymer content, (2) varying placement (extrusion) rate
Logarithmic conformal field theory
Gainutdinov, Azat; Ridout, David; Runkel, Ingo
2013-12-01
Conformal field theory (CFT) has proven to be one of the richest and deepest subjects of modern theoretical and mathematical physics research, especially as regards statistical mechanics and string theory. It has also stimulated an enormous amount of activity in mathematics, shaping and building bridges between seemingly disparate fields through the study of vertex operator algebras, a (partial) axiomatisation of a chiral CFT. One can add to this that the successes of CFT, particularly when applied to statistical lattice models, have also served as an inspiration for mathematicians to develop entirely new fields: the Schramm-Loewner evolution and Smirnov's discrete complex analysis being notable examples. When the energy operator fails to be diagonalisable on the quantum state space, the CFT is said to be logarithmic. Consequently, a logarithmic CFT is one whose quantum space of states is constructed from a collection of representations which includes reducible but indecomposable ones. This qualifier arises because of the consequence that certain correlation functions will possess logarithmic singularities, something that contrasts with the familiar case of power law singularities. While such logarithmic singularities and reducible representations were noted by Rozansky and Saleur in their study of the U (1|1) Wess-Zumino-Witten model in 1992, the link between the non-diagonalisability of the energy operator and logarithmic singularities in correlators is usually ascribed to Gurarie's 1993 article (his paper also contains the first usage of the term 'logarithmic conformal field theory'). The class of CFTs that were under control at this time was quite small. In particular, an enormous amount of work from the statistical mechanics and string theory communities had produced a fairly detailed understanding of the (so-called) rational CFTs. However, physicists from both camps were well aware that applications from many diverse fields required significantly more
DEFF Research Database (Denmark)
Mojaza, Matin; Pica, Claudio; Sannino, Francesco
2010-01-01
We compute the nonzero temperature free energy up to the order g^6 \\ln(1/g) in the coupling constant for vector like SU(N) gauge theories featuring matter transforming according to different representations of the underlying gauge group. The number of matter fields, i.e. flavors, is arranged in...... such a way that the theory develops a perturbative stable infrared fixed point at zero temperature. Due to large distance conformality we trade the coupling constant with its fixed point value and define a reduced free energy which depends only on the number of flavors, colors and matter representation....... We show that the reduced free energy changes sign, at the second, fifth and sixth order in the coupling, when decreasing the number of flavors from the upper end of the conformal window. If the change in sign is interpreted as signal of an instability of the system then we infer a critical number of...
Conformational flexibility of aspartame.
Toniolo, Claudio; Temussi, Pierandrea
2016-05-01
L-Aspartyl-L-phenylalanine methyl ester, better known as aspartame, is not only one of the most used artificial sweeteners, but also a very interesting molecule with respect to the correlation between molecular structure and taste. The extreme conformational flexibility of this dipeptide posed a huge difficulty when researchers tried to use it as a lead compound to design new sweeteners. In particular, it was difficult to take advantage of its molecular model as a mold to infer the shape of the, then unknown, active site of the sweet taste receptor. Here, we follow the story of the 3D structural aspects of aspartame from early conformational studies to recent docking into homology models of the receptor. © 2016 Wiley Periodicals, Inc. Biopolymers (Pept Sci) 106: 376-384, 2016. PMID:27038223
Conformal scalar field wormholes
Halliwell, Jonathan J.; Laflamme, Raymond
1989-01-01
The Euclidian Einstein equations with a cosmological constant and a conformally coupled scalar field are solved, taking the metric to be of the Robertson-Walker type. In the case Lambda = 0, solutions are found which represent a wormhole connecting two asymptotically flat Euclidian regions. In the case Lambda greater than 0, the solutions represent tunneling from a small Tolman-like universe to a large Robertson-Walker universe.
Conformable light emitting modules
Jablonski, Michal
2014-01-01
As we become increasingly aware that there is more to light than the image it forms on our retina, and as we become more environmentally aware, the value of non-image-forming light increases along with the need for various new light related appliances. In particular, some lighting related applications are emerging which demand conformability (flexibility and stretchability). Well-being, automotive or wearable electronic applications are just a few examples where these trends can be observed. ...
Conformal radiotherapy: a glossary
International Nuclear Information System (INIS)
Most of the concepts and terms related to conformal radiotherapy were produced by English-speaking authors and eventually validated by international groups of experts, whose working language was also English. Therefore, a significant part of this literature is poorly accessible to the French-speaking radiation oncology community. The present paper gathers the 'official' definitions already published in French, along with propositions for the remaining terms which should be submitted to a more formal and representative validation process. (author)
Poland, David; Simmons-Duffin, David
2016-06-01
The conformal bootstrap was proposed in the 1970s as a strategy for calculating the properties of second-order phase transitions. After spectacular success elucidating two-dimensional systems, little progress was made on systems in higher dimensions until a recent renaissance beginning in 2008. We report on some of the main results and ideas from this renaissance, focusing on new determinations of critical exponents and correlation functions in the three-dimensional Ising and O(N) models.
Evaluation of conformal integrals
Bzowski, Adam; Skenderis, Kostas
2015-01-01
We present a comprehensive method for the evaluation of a vast class of integrals representing 3-point functions of conformal field theories in momentum space. The method leads to analytic, closed-form expressions for all scalar and tensorial 3-point functions of operators with integer dimensions in any spacetime dimension. In particular, this encompasses all 3-point functions of the stress tensor, conserved currents and marginal scalar operators.
RBO Aleph: leveraging novel information sources for protein structure prediction.
Mabrouk, Mahmoud; Putz, Ines; Werner, Tim; Schneider, Michael; Neeb, Moritz; Bartels, Philipp; Brock, Oliver
2015-07-01
RBO Aleph is a novel protein structure prediction web server for template-based modeling, protein contact prediction and ab initio structure prediction. The server has a strong emphasis on modeling difficult protein targets for which templates cannot be detected. RBO Aleph's unique features are (i) the use of combined evolutionary and physicochemical information to perform residue-residue contact prediction and (ii) leveraging this contact information effectively in conformational space search. RBO Aleph emerged as one of the leading approaches to ab initio protein structure prediction and contact prediction during the most recent Critical Assessment of Protein Structure Prediction experiment (CASP11, 2014). In addition to RBO Aleph's main focus on ab initio modeling, the server also provides state-of-the-art template-based modeling services. Based on template availability, RBO Aleph switches automatically between template-based modeling and ab initio prediction based on the target protein sequence, facilitating use especially for non-expert users. The RBO Aleph web server offers a range of tools for visualization and data analysis, such as the visualization of predicted models, predicted contacts and the estimated prediction error along the model's backbone. The server is accessible at http://compbio.robotics.tu-berlin.de/rbo_aleph/. PMID:25897112
Astala, K; Kupiainen, A; Saksman, E
2009-01-01
We construct a conformally invariant random family of closed curves in the plane by welding of random homeomorphisms of the unit circle. The homeomorphism is constructed using the exponential of $\\beta X$ where $X$ is the restriction of the two dimensional free field on the circle and the parameter $\\beta$ is in the "high temperature" regime $\\beta<\\sqrt 2$. The welding problem is solved by studying a non-uniformly elliptic Beltrami equation with a random complex dilatation. For the existence a method of Lehto is used. This requires sharp probabilistic estimates to control conformal moduli of annuli and they are proven by decomposing the free field as a sum of independent fixed scale fields and controlling the correlations of the complex dilation restricted to dyadic cells of various scales. For uniqueness we invoke a result by Jones and Smirnov on conformal removability of H\\"older curves. We conjecture that our curves are locally related to SLE$(\\kappa)$ for $\\kappa<4$.
Conformal Janus on Euclidean Sphere
Bak, Dongsu; Rey, Soo-Jong
2016-01-01
We interpret Janus as an interface in a conformal field theory and study its properties. The Janus is created by an exactly marginal operator and we study its effect on the interface conformal field theory on the Janus. We do this by utilizing the AdS/CFT correspondence. We compute the interface free energy both from leading correction to the Euclidean action in the dual gravity description and from conformal perturbation theory in the conformal field theory. We find that the two results agree each other and that the interface free energy scales precisely as expected from the conformal invariance of the Janus interface.
Metric-torsional conformal gravity
International Nuclear Information System (INIS)
When in general geometric backgrounds the metric is accompanied by torsion, the metric conformal properties should correspondingly be followed by analogous torsional conformal properties; however a combined metric torsional conformal structure has never been found which provides a curvature that is both containing metric-torsional degree of freedom and conformally invariant: in this Letter we construct such a metric-torsional conformal curvature. We proceed by building the most general action, then deriving the most general system of field equations; we check their consistency by showing that both conservation laws and trace condition are verified. Final considerations and comments are outlined.
An Automatic Hierarchical Delay Analysis Tool
Institute of Scientific and Technical Information of China (English)
FaridMheir－El－Saadi; BozenaKaminska
1994-01-01
The performance analysis of VLSI integrated circuits(ICs) with flat tools is slow and even sometimes impossible to complete.Some hierarchical tools have been developed to speed up the analysis of these large ICs.However,these hierarchical tools suffer from a poor interaction with the CAD database and poorly automatized operations.We introduce a general hierarchical framework for performance analysis to solve these problems.The circuit analysis is automatic under the proposed framework.Information that has been automatically abstracted in the hierarchy is kept in database properties along with the topological information.A limited software implementation of the framework,PREDICT,has also been developed to analyze the delay performance.Experimental results show that hierarchical analysis CPU time and memory requirements are low if heuristics are used during the abstraction process.
Oocytes Polar Body Detection for Automatic Enucleation
Directory of Open Access Journals (Sweden)
Di Chen
2016-02-01
Full Text Available Enucleation is a crucial step in cloning. In order to achieve automatic blind enucleation, we should detect the polar body of the oocyte automatically. The conventional polar body detection approaches have low success rate or low efficiency. We propose a polar body detection method based on machine learning in this paper. On one hand, the improved Histogram of Oriented Gradient (HOG algorithm is employed to extract features of polar body images, which will increase success rate. On the other hand, a position prediction method is put forward to narrow the search range of polar body, which will improve efficiency. Experiment results show that the success rate is 96% for various types of polar bodies. Furthermore, the method is applied to an enucleation experiment and improves the degree of automatic enucleation.
DEFF Research Database (Denmark)
Automatic Program Development is a tribute to Robert Paige (1947-1999), our accomplished and respected colleague, and moreover our good friend, whose untimely passing was a loss to our academic and research community. We have collected the revised, updated versions of the papers published in his...... honor in the Higher-Order and Symbolic Computation Journal in the years 2003 and 2005. Among them there are two papers by Bob: (i) a retrospective view of his research lines, and (ii) a proposal for future studies in the area of the automatic program derivation. The book also includes some papers by...... members of the IFIP Working Group 2.1 of which Bob was an active member. All papers are related to some of the research interests of Bob and, in particular, to the transformational development of programs and their algorithmic derivation from formal specifications. Automatic Program Development offers a...
Conformal superalgebras via tractor calculus
Lischewski, Andree
2015-01-01
We use the manifestly conformally invariant description of a Lorentzian conformal structure in terms of a parabolic Cartan geometry in order to introduce a superalgebra structure on the space of twistor spinors and normal conformal vector fields formulated in purely algebraic terms on parallel sections in tractor bundles. Via a fixed metric in the conformal class, one reproduces a conformal superalgebra structure that has been considered in the literature before. The tractor approach, however, makes clear that the failure of this object to be a Lie superalgebra in certain cases is due to purely algebraic identities on the spinor module and to special properties of the conformal holonomy representation. Moreover, it naturally generalizes to higher signatures. This yields new formulas for constructing new twistor spinors and higher order normal conformal Killing forms out of existing ones, generalizing the well-known spinorial Lie derivative. Moreover, we derive restrictions on the possible dimension of the space of twistor spinors in any metric signature.
Conformal superalgebras via tractor calculus
International Nuclear Information System (INIS)
We use the manifestly conformally invariant description of a Lorentzian conformal structure in terms of a parabolic Cartan geometry in order to introduce a superalgebra structure on the space of twistor spinors and normal conformal vector fields formulated in purely algebraic terms on parallel sections in tractor bundles. Via a fixed metric in the conformal class, one reproduces a conformal superalgebra structure that has been considered in the literature before. The tractor approach, however, makes clear that the failure of this object to be a Lie superalgebra in certain cases is due to purely algebraic identities on the spinor module and to special properties of the conformal holonomy representation. Moreover, it naturally generalizes to higher signatures. This yields new formulas for constructing new twistor spinors and higher order normal conformal Killing forms out of existing ones, generalizing the well-known spinorial Lie derivative. Moreover, we derive restrictions on the possible dimension of the space of twistor spinors in any metric signature. (paper)
Energy Technology Data Exchange (ETDEWEB)
Smith, Colin Boughton [Energy Metering Technology (United Kingdom)
2000-08-01
At present, energy audits represent only snapshot situations of the flow of energy. The normal pattern of energy audits as seen through the eyes of an experienced energy auditor is described. A brief history of energy auditing is given. It is claimed that the future of energy auditing lies in automatic meter reading with expert data analysis providing continuous automatic auditing thereby reducing the skill element. Ultimately, it will be feasible to carry out auditing at intervals of say 30 minutes rather than five years.
DEFF Research Database (Denmark)
Burelli, Paolo; Preuss, Mike
2014-01-01
Automatically generating computer animations is a challenging and complex problem with applications in games and film production. In this paper, we investigate howto translate a shot list for a virtual scene into a series of virtual camera configurations — i.e automatically controlling the virtual...... camera. We approach this problem by modelling it as a dynamic multi-objective optimisation problem and show how this metaphor allows a much richer expressiveness than a classical single objective approach. Finally, we showcase the application of a multi-objective evolutionary algorithm to generate a shot...
Torres Moreno, Juan Manuel
2014-01-01
This new textbook examines the motivations and the different algorithms for automatic document summarization (ADS). We performed a recent state of the art. The book shows the main problems of ADS, difficulties and the solutions provided by the community. It presents recent advances in ADS, as well as current applications and trends. The approaches are statistical, linguistic and symbolic. Several exemples are included in order to clarify the theoretical concepts. The books currently available in the area of Automatic Document Summarization are not recent. Powerful algorithms have been develop
Metamaterials with conformational nonlinearity
Lapine, Mikhail; Shadrivov, Ilya V.; Powell, David A.; Kivshar, Yuri S.
2011-11-01
Within a decade of fruitful development, metamaterials became a prominent area of research, bridging theoretical and applied electrodynamics, electrical engineering and material science. Being man-made structures, metamaterials offer a particularly useful playground to develop interdisciplinary concepts. Here we demonstrate a novel principle in metamaterial assembly which integrates electromagnetic, mechanical, and thermal responses within their elements. Through these mechanisms, the conformation of the meta-molecules changes, providing a dual mechanism for nonlinearity and offering nonlinear chirality. Our proposal opens a wide road towards further developments of nonlinear metamaterials and photonic structures, adding extra flexibility to their design and control.
Conformally symmetric traversable wormholes
International Nuclear Information System (INIS)
Exact solutions of traversable wormholes are found under the assumption of spherical symmetry and the existence of a nonstatic conformal symmetry, which presents a more systematic approach in searching for exact wormhole solutions. In this work, a wide variety of solutions are deduced by considering choices for the form function, a specific linear equation of state relating the energy density and the pressure anisotropy, and various phantom wormhole geometries are explored. A large class of solutions impose that the spatial distribution of the exotic matter is restricted to the throat neighborhood, with a cutoff of the stress-energy tensor at a finite junction interface, although asymptotically flat exact solutions are also found. Using the 'volume integral quantifier', it is found that the conformally symmetric phantom wormhole geometries may, in principle, be constructed by infinitesimally small amounts of averaged null energy condition violating matter. Considering the tidal acceleration traversability conditions for the phantom wormhole geometry, specific wormhole dimensions and the traversal velocity are also deduced
Automatic Dance Lesson Generation
Yang, Yang; Leung, H.; Yue, Lihua; Deng, LiQun
2012-01-01
In this paper, an automatic lesson generation system is presented which is suitable in a learning-by-mimicking scenario where the learning objects can be represented as multiattribute time series data. The dance is used as an example in this paper to illustrate the idea. Given a dance motion sequence as the input, the proposed lesson generation…
DEFF Research Database (Denmark)
Rosendahl, Mads
1989-01-01
One way to analyse programs is to to derive expressions for their computational behaviour. A time bound function (or worst-case complexity) gives an upper bound for the computation time as a function of the size of input. We describe a system to derive such time bounds automatically using abstract...
Preference of small molecules for local minimum conformations when binding to proteins.
Directory of Open Access Journals (Sweden)
Qi Wang
Full Text Available It is well known that small molecules (ligands do not necessarily adopt their lowest potential energy conformations when binding to proteins. Analyses of protein-bound ligand crystal structures have reportedly shown that many of them do not even adopt the conformations at local minima of their potential energy surfaces (local minimum conformations. The results of these analyses raise a concern regarding the validity of virtual screening methods that use ligands in local minimum conformations. Here we report a normal-mode-analysis (NMA study of 100 crystal structures of protein-bound ligands. Our data show that the energy minimization of a ligand alone does not automatically stop at a local minimum conformation if the minimum of the potential energy surface is shallow, thus leading to the folding of the ligand. Furthermore, our data show that all 100 ligand conformations in their protein-bound ligand crystal structures are nearly identical to their local minimum conformations obtained from NMA-monitored energy minimization, suggesting that ligands prefer to adopt local minimum conformations when binding to proteins. These results both support virtual screening methods that use ligands in local minimum conformations and caution about possible adverse effect of excessive energy minimization when generating a database of ligand conformations for virtual screening.
De novo protein conformational sampling using a probabilistic graphical model
Debswapna Bhattacharya; Jianlin Cheng
2015-01-01
Efficient exploration of protein conformational space remains challenging especially for large proteins when assembling discretized structural fragments extracted from a protein structure data database. We propose a fragment-free probabilistic graphical model, FUSION, for conformational sampling in continuous space and assess its accuracy using ‘blind’ protein targets with a length up to 250 residues from the CASP11 structure prediction exercise. The method reduces sampling bottlenecks, exhib...
Conformational transitions of a semiflexible polymer in nematic solvents
Matsuyama, Akihiko
2002-01-01
Conformations of a single semiflexible polymer chain dissolved in a low molecular weight liquid crystalline solvents (nematogens) are examined by using a mean field theory. We takes into account a stiffness and partial orientational ordering of the polymer. As a result of an anisotropic coupling between the polymer and nematogen, we predict a discontinuous (or continuous) phase transition from a condensed-rodlike conformation to a swollen-one of the polymer chain, depending on the stiffness o...
Conformational Preferences in Small Peptide Models: The Relevance of cis/trans-Conformations.
Jangra, Harish; Haindl, Michael H; Achrainer, Florian; Hioe, Johnny; Gschwind, Ruth M; Zipse, Hendrik
2016-09-01
The accurate description of cis/trans peptide structures is of fundamental relevance for the field of protein modeling and protein structure determination. A comprehensive conformational analysis of dipeptide model Ace-Gly-NMe (1) has been carried out by using a combination of theoretical calculations and experimental ((1) H and (13) C NMR and NOESY) spectroscopic measurements to assess the relevance of cis-peptide conformers. NMR measurements in dimethyl sulfoxide (DMSO) solution and calculations employing a continuum solvation model both point to the extended trans,trans conformer C5_tt as the global minimum. The cis-peptide structures C5_ct and C5_tc, with the N- or C-terminal amide group in cis-conformation, are observed separately and located 13.0±2 kJ mol(-1) higher in energy. This is in close agreement with the theoretical prediction of around 12 kJ mol(-1) in DMSO. The ability of common protein force fields to reproduce the energies of the cis-amide conformers C5_ct and C5_tc in 1 is limited, making these methods unsuitable for the description of cis-peptide structures in protein simulations. PMID:27535479
Dimensional Reduction for Conformal Blocks
Hogervorst, Matthijs
2016-01-01
We consider the dimensional reduction of a CFT, breaking multiplets of the d-dimensional conformal group SO(d+1,1) up into multiplets of SO(d,1). This leads to an expansion of d-dimensional conformal blocks in terms of blocks in d-1 dimensions. In particular, we obtain a formula for 3d conformal blocks as an infinite sum over 2F1 hypergeometric functions with closed-form coefficients.
Fermion-Scalar Conformal Blocks
Iliesiu, Luca; Poland, David; Pufu, Silviu S; Simmons-Duffin, David; Yacoby, Ran
2015-01-01
We compute the conformal blocks associated with scalar-scalar-fermion-fermion 4-point functions in 3D CFTs. Together with the known scalar conformal blocks, our result completes the task of determining the so-called `seed blocks' in three dimensions. Conformal blocks associated with 4-point functions of operators with arbitrary spins can now be determined from these seed blocks by using known differential operators.
Einstein Gravity from Conformal Gravity
Maldacena, Juan
2011-01-01
We show that that four dimensional conformal gravity plus a simple Neumann boundary condition can be used to get the semiclassical (or tree level) wavefunction of the universe of four dimensional asymptotically de-Sitter or Euclidean anti-de Sitter spacetimes. This simple Neumann boundary condition selects the Einstein solution out of the more numerous solutions of conformal gravity. It thus removes the ghosts of conformal gravity from this computation. In the case of a five dimensional pure ...
Subtleties Concerning Conformal Tractor Bundles
Graham, C Robin
2012-01-01
The realization of tractor bundles as associated bundles in conformal geometry is studied. It is shown that different natural choices of principal bundle with normal Cartan connection corresponding to a given conformal manifold can give rise to topologically distinct associated tractor bundles for the same inducing representation. Consequences for homogeneous models and conformal holonomy are described. A careful presentation is made of background material concerning standard tractor bundles and equivalence between parabolic geometries and underlying structures.
Coends in conformal field theory
Fuchs, Jürgen
2016-01-01
The idea of "summing over all intermediate states" that is central for implementing locality in quantum systems can be realized by coend constructions. In the concrete case of systems of conformal blocks for a certain class of conformal vertex algebras, one deals with coends in functor categories. Working with these coends involves quite a few subtleties which, even though they have in principle already been understood twenty years ago, have not been sufficiently appreciated by the conformal field theory community.
Conformal Spectrum and Harmonic maps
Nadirashvili, Nikolai
2010-01-01
This paper is devoted to the study of the conformal spectrum (and more precisely the first eigenvalue) of the Laplace-Beltrami operator on a smooth connected compact Riemannian surface without boundary, endowed with a conformal class. We give a constructive proof of a critical metric which is smooth except at some conical singularities and maximizes the first eigenvalue in the conformal class of the background metric. We also prove that the map associating a finite number of eigenvectors of the maximizing $\\lambda_1$ into the sphere is harmonic, establishing a link between conformal spectrum and harmonic maps.
Reflections on Conformal Spectra
CERN. Geneva
2015-01-01
We use modular invariance and crossing symmetry of conformal field theory to reveal approximate reflection symmetries in the spectral decompositions of the partition function in two dimensions in the limit of large central charge and of the four-point function in any dimension in the limit of large scaling dimensions Δ0 of external operators. We use these symmetries to motivate universal upper bounds on the spectrum and the operator product expansion coefficients, which we then derive by independent techniques. Some of the bounds for four-point functions are valid for finite Δ0 as well as for large Δ0. We discuss a similar symmetry in a large spacetime dimension limit. Finally, we comment on the analogue of the Cardy formula and sparse light spectrum condition for the four-point function. (based on 1510.08772 with Kim & Ooguri). This seminar will be given via videolink
Reflections on Conformal Spectra
Kim, Hyungrok; Ooguri, Hirosi
2015-01-01
We use modular invariance and crossing symmetry of conformal field theory to reveal approximate reflection symmetries in the spectral decompositions of the partition function in two dimensions in the limit of large central charge and of the four-point function in any dimension in the limit of large scaling dimensions $\\Delta_0$ of external operators. We use these symmetries to motivate universal upper bounds on the spectrum and the operator product expansion coefficients, which we then derive by independent techniques. Some of the bounds for four-point functions are valid for finite $\\Delta_0$ as well as for large $\\Delta_0$. We discuss a similar symmetry in a large spacetime dimension limit. Finally, we comment on the analogue of the Cardy formula and sparse light spectrum condition for the four-point function.
Dai, Liang; Schmidt, Fabian
2015-01-01
Fermi Normal Coordinates (FNC) are a useful frame for isolating the locally observable, physical effects of a long-wavelength spacetime perturbation. Their cosmological application, however, is hampered by the fact that they are only valid on scales much smaller than the horizon. We introduce a generalization that we call Conformal Fermi Coordinates (CFC). CFC preserve all the advantages of FNC, but in addition are valid outside the horizon. They allow us to calculate the coupling of long- and short-wavelength modes on all scales larger than the sound horizon of the cosmological fluid, starting from the epoch of inflation until today, by removing the complications of the second order Einstein equations to a large extent, and eliminating all gauge ambiguities. As an application, we present a calculation of the effect of long-wavelength tensor modes on small scale density fluctuations. We recover previous results, but clarify the physical content of the individual contributions in terms of locally measurable ef...
Fully Automatic Expression-Invariant Face Correspondence
Salazar, Augusto; Shu, Chang; Prieto, Flavio
2012-01-01
We consider the problem of computing accurate point-to-point correspondences among a set of human face scans with varying expressions. Our fully automatic approach does not require any manually placed markers on the scan. Instead, the approach learns the locations of a set of landmarks present in a database and uses this knowledge to automatically predict the locations of these landmarks on a newly available scan. The predicted landmarks are then used to compute point-to-point correspondences between a template model and the newly available scan. To accurately fit the expression of the template to the expression of the scan, we use as template a blendshape model. Our algorithm was tested on a database of human faces of different ethnic groups with strongly varying expressions. Experimental results show that the obtained point-to-point correspondence is both highly accurate and consistent for most of the tested 3D face models.
Energy Technology Data Exchange (ETDEWEB)
Ageishi, N. [Yamatake-Honeywell Co. Ltd., Tokyo (Japan)
1998-06-01
This paper describes automatic crude oil switching control for normal pressure distilling equipment used in oil refineries. Crude oil has been switched several times a week, where an operator has made adjustment manually at each time of the switching. Operation frequency was high, much labor was required, and loss was produced due to excess quality. The present attempt has realized an optimum operation by introducing multivariable crude oil switching technology and combining it with the existing advanced control technology. Because the realized technology automatically detects the crude oil switching which does not require input of yield data of crude oil to be processed based on a production plan, there is no need of TBP slope estimation, and control mode switching by an operator based thereon, or feed-forward by using data of crude oil nature. The technology is also capable of dealing with crude oil switching having large yield variation. Operating conditions are adjusted automatically based on the nature estimation, hence no manual adjustment is required. Loss due to excess quality can be minimized. Time to adjust the switching can be decreased. Effectiveness of this system was verified in a wide range from normal operation to unsteady state in crude oil switching. 3 refs., 6 figs., 2 tabs.
Automatic indexing, compiling and classification
International Nuclear Information System (INIS)
A review of the principles of automatic indexing, is followed by a comparison and summing-up of work by the authors and by a Soviet staff from the Moscou INFORM-ELECTRO Institute. The mathematical and linguistic problems of the automatic building of thesaurus and automatic classification are examined
The pseudo-conformal universe: scale invariance from spontaneous breaking of conformal symmetry
International Nuclear Information System (INIS)
We present a novel theory of the very early universe which addresses the traditional horizon and flatness problems of big bang cosmology and predicts a scale invariant spectrum of perturbations. Unlike inflation, this scenario requires no exponential accelerated expansion of space-time. Instead, the early universe is described by a conformal field theory minimally coupled to gravity. The conformal fields develop a time-dependent expectation value which breaks the flat space so(4,2) conformal symmetry down to so(4,1), the symmetries of de Sitter, giving perturbations a scale invariant spectrum. The solution is an attractor, at least in the case of a single time-dependent field. Meanwhile, the metric background remains approximately flat but slowly contracts, which makes the universe increasingly flat, homogeneous and isotropic, akin to the smoothing mechanism of ekpyrotic cosmology. Our scenario is very general, requiring only a conformal field theory capable of developing the appropriate time-dependent expectation values, and encompasses existing incarnations of this idea, specifically the U(1) model of Rubakov and the Galileon Genesis scenario. Its essential features depend only on the symmetry breaking pattern and not on the details of the underlying lagrangian. It makes generic observational predictions that make it potentially distinguishable from standard inflation, in particular significant non-gaussianities and the absence of primordial gravitational waves
International Nuclear Information System (INIS)
The paper describes the automatic gaussmeter operating according to the principle of nuclear magnetic resonance. There have been discussed the operating principle, the block diagram and operating parameters of the meter. It can be applied to measurements of induction in electromagnets of wide-line radio-spectrometers EPR and NMR and in calibration stands of magnetic induction values. Frequency range of an autodyne oscillator from 0,6 up to 86 MHz for protons is corresponding to the field range from 0.016 up to 2T. Applicaton of other nuclei, such as 7Li and 2D is also foreseen. The induction measurement is carried over automatically, and the NMR signal and value of measured induction are displayed on a monitor screen. (author)
Vamos¸, C˘alin
2013-01-01
Our book introduces a method to evaluate the accuracy of trend estimation algorithms under conditions similar to those encountered in real time series processing. This method is based on Monte Carlo experiments with artificial time series numerically generated by an original algorithm. The second part of the book contains several automatic algorithms for trend estimation and time series partitioning. The source codes of the computer programs implementing these original automatic algorithms are given in the appendix and will be freely available on the web. The book contains clear statement of the conditions and the approximations under which the algorithms work, as well as the proper interpretation of their results. We illustrate the functioning of the analyzed algorithms by processing time series from astrophysics, finance, biophysics, and paleoclimatology. The numerical experiment method extensively used in our book is already in common use in computational and statistical physics.
P.KEERTHANAA, K.JEEVITHA, V.NAVINA, G.INDIRA, S.JAYAMANI
2013-01-01
The Primary Aim Of The Project Is To Design, Develop And Implement Automatic Wall Painting Robot Which Helps To Achieve Low Cost Painting Equipment. Despite The Advances In Robotics And Its Wide Spreading Applications, Interior Wall Painting Has Shared Little In Research Activities. The Painting Chemicals Can Cause Hazards To The Human Painters Such As Eye And Respiratory System Problems. Also The Nature Of Painting Procedure That Requires Repeated Work And Hand Rising Makes It Boring, Time A...
Lígia Maria da Silva Ribeiro; Gabriel de Sousa Torcato David
2007-01-01
To profit from the data collected by the SIGARRA academic IS, a systematic setof graphs and statistics has been added to it and are available on-line. Thisanalytic information can be automatically included in a flexible yearly report foreach program as well as in a synthesis report for the whole school. Somedifficulties in the interpretation of some graphs led to the definition of new keyindicators and the development of a data warehouse across the university whereeffective data consolidation...
Automatic Inductive Programming Tutorial
Aler, Ricardo
2006-01-01
Computers that can program themselves is an old dream of Artificial Intelligence, but only nowadays there is some progress of remark. In relation to Machine Learning, a computer program is the most powerful structure that can be learned, pushing the final goal well beyond neural networks or decision trees. There are currently many separate areas, working independently, related to automatic programming, both deductive and inductive. The first goal of this tutorial is to give to the attendants ...
DEFF Research Database (Denmark)
Mueller Loose, Simone
Consumers' food decisions are to a large extent shaped by automatic processes, which are either internally directed through learned habits and routines or externally influenced by context factors and visual information triggers. Innovative research methods such as eye tracking, choice experiments...... and food diaries allow us to better understand the impact of unconscious processes on consumers' food choices. Simone Mueller Loose will provide an overview of recent research insights into the effects of habit and context on consumers' food choices....
Automatic Differentiation Variational Inference
Kucukelbir, Alp; Tran, Dustin; Ranganath, Rajesh; Gelman, Andrew; Blei, David M.
2016-01-01
Probabilistic modeling is iterative. A scientist posits a simple model, fits it to her data, refines it according to her analysis, and repeats. However, fitting complex models to large data is a bottleneck in this process. Deriving algorithms for new models can be both mathematically and computationally challenging, which makes it difficult to efficiently cycle through the steps. To this end, we develop automatic differentiation variational inference (ADVI). Using our method, the scientist on...
Automaticity or active control
DEFF Research Database (Denmark)
Tudoran, Ana Alina; Olsen, Svein Ottar
This study addresses the quasi-moderating role of habit strength in explaining action loyalty. A model of loyalty behaviour is proposed that extends the traditional satisfaction–intention–action loyalty network. Habit strength is conceptualised as a cognitive construct to refer to the psychologic......, respectively, between intended loyalty and action loyalty. At high levels of habit strength, consumers are more likely to free up cognitive resources and incline the balance from controlled to routine and automatic-like responses....
Automatic digital image registration
Goshtasby, A.; Jain, A. K.; Enslin, W. R.
1982-01-01
This paper introduces a general procedure for automatic registration of two images which may have translational, rotational, and scaling differences. This procedure involves (1) segmentation of the images, (2) isolation of dominant objects from the images, (3) determination of corresponding objects in the two images, and (4) estimation of transformation parameters using the center of gravities of objects as control points. An example is given which uses this technique to register two images which have translational, rotational, and scaling differences.
Replacement between conformity and counter-conformity in consumption decisions.
Chou, Ting-Jui; Chang, En-Chung; Dai, Qi; Wong, Veronica
2013-02-01
This study assessed, in a Chinese context, how self-esteem interacts with perceived similarity and uniqueness to yield cognitive dissonance, and whether the dissonance leads to self-reported conformity or counter-conformity behavior. Participants were 408 respondents from 4 major Chinese cities (M age = 33.0 yr., SD = 4.3; 48% men). Self-perceptions of uniqueness, similarity, cognitive dissonance, self-esteem and need to behave in conformity or counter-conformity were measured. A theoretical model was assessed in four situations, relating the ratings of self-esteem and perceived similarity/uniqueness to the way other people at a wedding were dressed, and the resultant cognitive dissonance and conformity/ counter-conformity behavior. Regardless of high or low self-esteem, all participants reported cognitive dissonance when they were told that they were dressed extremely similarly to or extremely differently from the other people attending the wedding. However, the conforming/counter-conforming strategies used by participants to resolve the cognitive dissonance differed. When encountering dissonance induced by the perceived extreme uniqueness of dress, participants with low self-esteem tended to say they would dress next time so as to conform with the way others were dressed, while those with high self-esteem indicated they would continue their counter-conformity in attire. When encountering dissonance induced by the perceived extreme similarity to others, both those with high and low self-esteem tended to say they would dress in an unorthodox manner to surprise other people in the future. PMID:23654033
Classical Virasoro irregular conformal block
Rim, Chaiho
2015-01-01
Virasoro irregular conformal block with arbitrary rank is obtained for the classical limit or equivalently Nekrasov-Shatashvili limit using the beta-deformed irregular matrix model (Penner-type matrix model for the irregular conformal block). The same result is derived using the generalized Mathieu equation which is equivalent to the loop equation of the irregular matrix model.
Conformal invariance in harmonic superspace
International Nuclear Information System (INIS)
N=2 conformal supersymmetry is realized in harmonic superspace, its peculiarities are analyzed. The coordinate group and analytical prepotentials for N=2 conformal supergravity are found. A new version of the N=2 Einstein supergravity with infinite number of auxiliary fields is suggested. A hypermultiplet without central charges and constraints is used as a compensator
Hazboun, Jeffrey Shafiq
2014-10-01
Cartan geometry provides a rich formalism from which to look at various geometrically motivated extensions to general relativity. In this manuscript, we start by motivating reasons to extend the theory of general relativity. We then introduce the reader to our technique, called the quotient manifold method, for extending the geometry of spacetime. We will specifically look at the class of theories formed from the various quotients of the conformal group. Starting with the conformal symmetries of Euclidean space, we construct a manifold where time manifests as a part of the geometry. Though there is no matter present in the geome- try studied here, geometric terms analogous to dark energy and dark matter appear when we write down the Einstein tensor. Specifically, the quotient of the conformal group of Euclidean four-space by its Weyl subgroup results in a geometry possessing many of the properties of relativistic phase space, including both a natural symplectic form and nondegenerate Killing metric. We show the general solution possesses orthogonal Lagrangian submanifolds, with the induced metric and the spin connection on the submanifolds necessarily Lorentzian, despite the Euclidean starting point. By examining the structure equations of the biconformal space in an orthonormal frame adapted to its phase space properties, we also find two new tensor fields exist in this geometry, not present in Riemannian geometry. The first is a combination of the Weyl vector with the scale factor on the metric, and determines the time-like directions on the submanifolds. The second comes from the components of the spin connection, symmetric with respect to the new metric. Though this field comes from the spin connection, it transforms ho- mogeneously. Finally, we show in the absence of Cartan curvature or sources, the configuration space has geometric terms equivalent to a perfect fluid and a cosmological constant. We complete the analysis of this homogeneous space by
Quality of coverage: conformity measures for stereotactic radiosurgery.
Wu, Q-R Jackie; Wessels, B W; Einstein, D B; Maciunas, R J; Kim, E Y; Kinsella, T J
2003-01-01
In radiosurgery, conformity indices are often used to compare competing plans, evaluate treatment techniques, and assess clinical complications. Several different indices have been reported to measure the conformity of the prescription isodose to the target volume. The PITV recommended in the Radiation Therapy Oncology Group (RTOG) radiosurgery guidelines, defined as the ratio of the prescription isodose volume (PI) over the target volume (TV), is probably the most frequently quoted. However, these currently used conformity indices depend on target size and shape complexity. The objectives of this study are to systematically investigate the influence of target size and shape complexity on existing conformity indices, and to propose a different conformity index-the conformity distance index (CDI). The CDI is defined as the average distance between the target and the prescription isodose line. This study examines five case groups with volumes of 0.3, 1.0, 3.0, 10.0, and 30.0 cm(3). Each case group includes four simulated shapes: a sphere, a moderate ellipsoid, an extreme ellipsoid, and a concave "C" shape. Prescription dose coverages are generated for three simplified clinical scenarios, i.e., the PI completely covers the TV with 1 and 2 mm margins, and the PI over-covers one half of the TV with a 1 mm margin and under-covers the other half with a 1 mm margin. Existing conformity indices and the CDI are calculated for these five case groups as well as seven clinical cases. When these values are compared, the RTOG PITV conformity index and other similar conformity measures have much higher values than the CDI for smaller and more complex shapes. With the same quality of prescription dose coverage, the CDI yields a consistent conformity measure. For the seven clinical cases, we also find that the same PITV values can be associated with very different conformity qualities while the CDI predicts the conformity quality accurately. In summary, the proposed CDI provides
Projectors, Shadows, and Conformal Blocks
Simmons-Duffin, David
2012-01-01
We introduce a method for computing conformal blocks of operators in arbitrary Lorentz representations in any spacetime dimension, making it possible to apply bootstrap techniques to operators with spin. The key idea is to implement the "shadow formalism" of Ferrara, Gatto, Grillo, and Parisi in a setting where conformal invariance is manifest. Conformal blocks in d-dimensions can be expressed as integrals over the projective null-cone in the "embedding space" R^{d+1,1}. Taking care with their analytic structure, these integrals can be evaluated in great generality, reducing the computation of conformal blocks to a bookkeeping exercise. To facilitate calculations in four-dimensional CFTs, we introduce techniques for writing down conformally-invariant correlators using auxiliary twistor variables, and demonstrate their use in some simple examples.
Recursion Relations for Conformal Blocks
Penedones, João; Yamazaki, Masahito
2015-01-01
In the context of conformal field theories in general space-time dimension, we find all the possible singularities of the conformal blocks as functions of the scaling dimension $\\Delta$ of the exchanged operator. In particular, we argue, using representation theory of parabolic Verma modules, that in odd spacetime dimension the singularities are only simple poles. We discuss how to use this information to write recursion relations that determine the conformal blocks. We first recover the recursion relation introduced in 1307.6856 for conformal blocks of external scalar operators. We then generalize this recursion relation for the conformal blocks associated to the four point function of three scalar and one vector operator. Finally we specialize to the case in which the vector operator is a conserved current.
Towards conformal loop quantum gravity
Wang, C H T
2006-01-01
A discussion is given of recent developments in canonical gravity that assimilates the conformal analysis of gravitational degrees of freedom. The work is motivated by the problem of time in quantum gravity and is carried out at the metric and the triad levels. At the metric level, it is shown that by extending the Arnowitt-Deser-Misner (ADM) phase space of general relativity (GR), a conformal form of geometrodynamics can be constructed. In addition to the Hamiltonian and diffeomorphism constraints, an extra first class constraint is introduced to generate conformal transformations. This phase space consists of York's mean extrinsic curvature time, conformal three-metric and their momenta. At the triad level, the phase space of GR is further enlarged by incorporating spin-gauge as well as conformal symmetries. This leads to a canonical formulation of GR using a new set of real spin connection variables. The resulting gravitational constraints are first class, consisting of the Hamiltonian constraint and the c...
Investigating the Relationship between Stable Personality Characteristics and Automatic Imitation.
Directory of Open Access Journals (Sweden)
Emily E Butler
Full Text Available Automatic imitation is a cornerstone of nonverbal communication that fosters rapport between interaction partners. Recent research has suggested that stable dimensions of personality are antecedents to automatic imitation, but the empirical evidence linking imitation with personality traits is restricted to a few studies with modest sample sizes. Additionally, atypical imitation has been documented in autism spectrum disorders and schizophrenia, but the mechanisms underpinning these behavioural profiles remain unclear. Using a larger sample than prior studies (N=243, the current study tested whether performance on a computer-based automatic imitation task could be predicted by personality traits associated with social behaviour (extraversion and agreeableness and with disorders of social cognition (autistic-like and schizotypal traits. Further personality traits (narcissism and empathy were assessed in a subsample of participants (N=57. Multiple regression analyses showed that personality measures did not predict automatic imitation. In addition, using a similar analytical approach to prior studies, no differences in imitation performance emerged when only the highest and lowest 20 participants on each trait variable were compared. These data weaken support for the view that stable personality traits are antecedents to automatic imitation and that neural mechanisms thought to support automatic imitation, such as the mirror neuron system, are dysfunctional in autism spectrum disorders or schizophrenia. In sum, the impact that personality variables have on automatic imitation is less universal than initial reports suggest.
Exposure to violent video games increases automatic aggressiveness.
Uhlmann, Eric; Swanson, Jane
2004-02-01
The effects of exposure to violent video games on automatic associations with the self were investigated in a sample of 121 students. Playing the violent video game Doom led participants to associate themselves with aggressive traits and actions on the Implicit Association Test. In addition, self-reported prior exposure to violent video games predicted automatic aggressive self-concept, above and beyond self-reported aggression. Results suggest that playing violent video games can lead to the automatic learning of aggressive self-views. PMID:15013259
Latosinski, Adam; Meissner, Krzysztof A; Nicolai, Hermann
2015-01-01
We present an extended version of the Conformal Standard Model (characterized by the absence of any new intermediate scales between the electroweak scale and the Planck scale) with an enlarged scalar sector coupling to right-chiral neutrinos in such a way that the scalar potential and the Yukawa couplings involving only right-chiral neutrinos are invariant under a new global symmetry SU(3)$_N$ which is broken explicitly only by the Yukawa interaction coupling right-chiral neutrinos and the electroweak lepton doublets. We point out four main advantages of such an enlargement, namely: (1) the economy of the (non-supersymmetric) Standard Model, and thus its observational success, is preserved; (2) thanks to the enlarged scalar sector the RG improved one-loop effective potential is everywhere positive with a stable global minimum, thereby avoiding the notorious instability of the Standard Model vacuum; (3) the pseudo-Goldstone bosons resulting from spontaneous breaking of the SU(3)$_N$ symmetry are natural Dark M...
Conformational Dynamics of Insulin
Directory of Open Access Journals (Sweden)
Qing-xin eHua
2011-10-01
Full Text Available We have exploited a prandial insulin analogue (insulin lispro, the active component of Humalog®; Eli Lilly and Co. to elucidate the underlying structure and dynamics of insulin as a monomer in solution. Whereas NMR-based modeling recapitulates structural relationships of insulin crystals (T-state protomers, dynamic anomalies are revealed by amide-proton exchange kinetics in D2O. Surprisingly, the majority of hydrogen bonds observed in crystal structures are only transiently maintained in solution, including key T-state-specific inter-chain contacts. Long-lived hydrogen bonds (as defined by global exchange kinetics exist only at a subset of four -helical sites (two per chain flanking an internal disulfide bridge (cystine A20-B19; these sites map within the proposed folding nucleus of proinsulin. The anomalous flexibility of insulin otherwise spans its active surface and may facilitate receptor binding. Because conformational fluctuations promote the degradation of pharmaceutical formulations, we envisage that dynamic re-engineering of insulin may enable design of ultra-stable formulations for humanitarian use in the developing world.
Imaging of conformational changes
Energy Technology Data Exchange (ETDEWEB)
Michl, Josef [Univ. of Colorado, Boulder, CO (United States)
2016-03-13
Control of intramolecular conformational change in a small number of molecules or even a single one by an application of an outside electric field defined by potentials on nearby metal or dielectric surfaces has potential applications in both 3-D and 2-D nanotechnology. Specifically, the synthesis, characterization, and understanding of designed solids with controlled built-in internal rotational motion of a dipole promises a new class of materials with intrinsic dielectric, ferroelectric, optical and optoelectronic properties not found in nature. Controlled rotational motion is of great interest due to its expected utility in phenomena as diverse as transport, current flow in molecular junctions, diffusion in microfluidic channels, and rotary motion in molecular machines. A direct time-resolved observation of the dynamics of motion on ps or ns time scale in a single molecule would be highly interesting but is also very difficult and has yet to be accomplished. Much can be learned from an easier but still challenging comparison of directly observed initial and final orientational states of a single molecule, which is the basis of this project. The project also impacts the understanding of surface-enhanced Raman spectroscopy (SERS) and single-molecule spectroscopic detection, as well as the synthesis of solid-state materials with tailored properties from designed precursors.
Manifestation of Conformal Symmetry in the Light Flavor Baryon Sector
International Nuclear Information System (INIS)
On the AdS5 cone, conformally compactified to R1 x S3, a quark-diquark model of light flavor baryons is developed. The system on this manifold is described in terms of a scalar conformal equation, gauged by the field of a D3 brane whose transversal dimensions have been conformally wrapped over R1 x S3. Such a system does not result exactly conformally invariant because the gauge potential slightly modifies the conformal centrifugal barrier of the free geodesic motion. Thanks to this, the model describes the correct mass ordering in the P11-S11 pairs through the spectra as a combined effect of conformal symmetry breaking, on the one side, and a parity change of the diquark from a scalar at low masses, to a pseudoscalar at higher masses, on the other. We calculate the number of resonances with masses below 2500 MeV needed for the completeness of the above scheme and find a total of 32 ''missing'' nucleon and states. Their absence or presence in the respective spectra relates to the degree to which conformal symmetry is realized in the lightest flavor sector. The scheme also allows for a prediction of the dressing function of an effective instantaneous gluon propagator from the Fourier transform of the gauge potential. We find a dressing function that is finite in the infrared and tends to zero at infinity.
Conformal bootstrap with slightly broken higher spin symmetry
Alday, Luis F.; Zhiboedov, Alexander
2016-06-01
We consider conformal field theories with slightly broken higher spin symmetry in arbitrary spacetime dimensions. We analyze the crossing equation in the double light-cone limit and solve for the anomalous dimensions of higher spin currents γ s with large spin s. The result depends on the symmetries and the spectrum of the unperturbed conformal field theory. We reproduce all known results and make further predictions. In particular we make a prediction for the anomalous dimensions of higher spin currents in the 3d Ising model.
MARZ: Manual and Automatic Redshifting Software
Hinton, Samuel R; Lidman, Chris; Glazebrook, Karl; Lewis, Geraint F
2016-01-01
The Australian Dark Energy Survey (OzDES) is a 100-night spectroscopic survey underway on the Anglo-Australian Telescope using the fibre-fed 2-degree-field (2dF) spectrograph. We have developed a new redshifting application Marz with greater usability, flexibility, and the capacity to analyse a wider range of object types than the Runz software package previously used for redshifting spectra from 2dF. Marz is an open-source, client-based, Javascript web-application which provides an intuitive interface and powerful automatic matching capabilities on spectra generated from the AAOmega spectrograph to produce high quality spectroscopic redshift measurements. The software can be run interactively or via the command line, and is easily adaptable to other instruments and pipelines if conforming to the current FITS file standard is not possible. Behind the scenes, a modified version of the Autoz cross-correlation algorithm is used to match input spectra against a variety of stellar and galaxy templates, and automat...
Towards conformal loop quantum gravity
H-T Wang, Charles
2006-03-01
A discussion is given of recent developments in canonical gravity that assimilates the conformal analysis of gravitational degrees of freedom. The work is motivated by the problem of time in quantum gravity and is carried out at the metric and the triad levels. At the metric level, it is shown that by extending the Arnowitt-Deser-Misner (ADM) phase space of general relativity (GR), a conformal form of geometrodynamics can be constructed. In addition to the Hamiltonian and Diffeomorphism constraints, an extra first class constraint is introduced to generate conformal transformations. This phase space consists of York's mean extrinsic curvature time, conformal three-metric and their momenta. At the triad level, the phase space of GR is further enlarged by incorporating spin-gauge as well as conformal symmetries. This leads to a canonical formulation of GR using a new set of real spin connection variables. The resulting gravitational constraints are first class, consisting of the Hamiltonian constraint and the canonical generators for spin-gauge and conformorphism transformations. The formulation has a remarkable feature of being parameter-free. Indeed, it is shown that a conformal parameter of the Barbero-Immirzi type can be absorbed by the conformal symmetry of the extended phase space. This gives rise to an alternative approach to loop quantum gravity that addresses both the conceptual problem of time and the technical problem of functional calculus in quantum gravity.
Automatic radioactive waste recycling
International Nuclear Information System (INIS)
The production of a plutonium ingot by calcium reduction process at CEA/Valduc generates a residue called 'slag'. This article introduces the recycling unit which is dedicated to the treatment of slags. The aim is to separate and to recycle the plutonium trapped in this bulk on the one hand, and to generate a disposable waste from the slag on the other hand. After a general introduction of the facilities, some elements will be enlightened, particularly the dissolution step, the filtration and the drying equipment. Reflections upon technological constraints will be proposed, and the benefits of a fully automatic recycling unit of nuclear waste will also be stressed. (authors)
Automatic Configuration in NTP
Institute of Scientific and Technical Information of China (English)
Jiang Zongli(蒋宗礼); Xu Binbin
2003-01-01
NTP is nowadays the most widely used distributed network time protocol, which aims at synchronizing the clocks of computers in a network and keeping the accuracy and validation of the time information which is transmitted in the network. Without automatic configuration mechanism, the stability and flexibility of the synchronization network built upon NTP protocol are not satisfying. P2P's resource discovery mechanism is used to look for time sources in a synchronization network, and according to the network environment and node's quality, the synchronization network is constructed dynamically.
Locally conformal symplectic manifolds
Directory of Open Access Journals (Sweden)
Izu Vaisman
1985-01-01
Full Text Available A locally conformal symplectic (l. c. s. manifold is a pair (M2n,Ω where M2n(n>1 is a connected differentiable manifold, and Ω a nondegenerate 2-form on M such that M=⋃αUα (Uα- open subsets. Ω/Uα=eσαΩα, σα:Uα→ℝ, dΩα=0. Equivalently, dΩ=ω∧Ω for some closed 1-form ω. L. c. s. manifolds can be seen as generalized phase spaces of Hamiltonian dynamical systems since the form of the Hamilton equations is, in fact, preserved by homothetic canonical transformations. The paper discusses first Hamiltonian vector fields, and infinitesimal automorphisms (i. a. on l. c. s. manifolds. If (M,Ω has an i. a. X such that ω(X≠0, we say that M is of the first kind and Ω assumes the particular form Ω=dθ−ω∧θ. Such an M is a 2-contact manifold with the structure forms (ω,θ, and it has a vertical 2-dimensional foliation V. If V is regular, we can give a fibration theorem which shows that M is a T2-principal bundle over a symplectic manifold. Particularly, V is regular for some homogeneous l. c. s, manifolds, and this leads to a general construction of compact homogeneous l. c. s, manifolds. Various related geometric results, including reductivity theorems for Lie algebras of i. a. are also given. Most of the proofs are adaptations of corresponding proofs in symplectic and contact geometry. The paper ends with an Appendix which states an analogous fibration theorem in Riemannian geometry.
Conformal Tensors via Lovelock Gravity
Kastor, David
2013-01-01
Constructs from conformal geometry are important in low dimensional gravity models, while in higher dimensions the higher curvature interactions of Lovelock gravity are similarly prominent. Considering conformal invariance in the context of Lovelock gravity leads to natural, higher-curvature generalizations of the Weyl, Schouten, Cotton and Bach tensors, with properties that straightforwardly extend those of their familiar counterparts. As a first application, we introduce a new set of conformally invariant gravity theories in D=4k dimensions, based on the squares of the higher curvature Weyl tensors.
Local conformity induced global oscillation
Li, Dong; Li, Wei; Hu, Gang; Zheng, Zhigang
2009-04-01
The game ‘rock-paper-scissors’ model, with the consideration of the effect of the psychology of conformity, is investigated. The interaction between each two agents is global, but the strategy of the conformity is local for individuals. In the statistical opinion, the probability of the appearance of each strategy is uniform. The dynamical analysis of this model indicates that the equilibrium state may lose its stability at a threshold and is replaced by a globally oscillating state. The global oscillation is induced by the local conformity, which is originated from the synchronization of individual strategies.
Conformal radiotherapy: revolution or evolution?
International Nuclear Information System (INIS)
The advantage the most clearly known of a conformal approach takes place in the protection of sane tissues. A randomized study comparing classical radiotherapy and conformal (defined with the use of masks) has noticed a significant reduction of the delayed rectal toxicity after conformal irradiation for patients suffering of prostate tumor. This benefit has been observed with a simple technique (three beams) and a dose not really high (66 Gy). It could bring a safety margin in the case of increasing of the tumor dose. (N.C.)
Conformal extensions for stationary spacetimes
Aceña, Andrés E
2011-01-01
The construction of the cylinder at spatial infinity for stationary spacetimes is considered. Using a specific conformal gauge and frame, it is shown that the tensorial fields associated to the conformal Einstein field equations admit expansions in a neighbourhood of the cylinder at spatial infinity which are analytic with respect to some suitable time, radial and angular coordinates. It is then shown that the essentials of the construction are independent of the choice of conformal gauge. As a consequence, one finds that the construction of the cylinder at spatial infinity and the regular finite initial value problem for stationary initial data sets are, in a precise sense, as regular as they could be.
Antibody sensed protein surface conformation
Directory of Open Access Journals (Sweden)
Scott R. Schricker
2011-12-01
Full Text Available An antibody-modified atomic force microscope (AFM tip was used to detect conformational changes of fibronectin deposited on a poly(methyl methacrylate/poly(acrylic acid block copolymer compared to PMMA and a random poly(methyl methacrylate/poly(acrylic acid copolymer with an identical chemical composition. Based on the antibody-protein adhesive force maps and phase imaging, it was found that the nanomorphology of the triblock copolymer induces the desired conformation of fibronectin. This finding demonstrates that block copolymer nanomorphology can be used to regulate protein conformation and potentially cellular response.
Conformal Patterson-Walker metrics
Hammerl, Matthias; Šilhan, Josef; Taghavi-Chabert, Arman; Žádník, Vojtěch
2016-01-01
The classical Patterson-Walker construction of a split-signature (pseudo-)Riemannian structure from a given torsion-free affine connection is generalized to a construction of a split-signature conformal structure from a given projective class of connections. A characterization of the induced structures is obtained. We achieve a complete description of Einstein metrics in the conformal class formed by the Patterson-Walker metric. Finally, we describe all symmetries of the conformal Patterson-Walker metric. In both cases we obtain descriptions in terms of geometric data on the original structure.
Conformation of hindered piperidines: Spectroscopic evidence for contribution of boat conformations
Indian Academy of Sciences (India)
A Thangamani; J Jayabharathi; A Manimekalai
2010-07-01
High resolution 1H and 13C NMR resonance assignments and conformational assignments were carried out for four (3)-benzyl-(2),(6)-bis(aryl)piperidin-4-ones 1-4 and their four -nitroso-(3)-benzyl-(2),(6)-bis(aryl)piperidin-4-ones 5-8. In addition to conventional 1D NMR methods, 2D shiftcorrelated NMR techniques (1H-1H COSY and 1H-13C COSY) were used for signal assignments. At room temperature the (3)-benzyl-(2),(6)-bis(aryl)piperidin-4-ones 1-4 exist in only one isomeric form whereas their -nitroso derivatives 5-8 exist in two isomeric forms. The preferred conformations of both the isomeric forms of nitrosamines were determined by comparison of the spectral data with those of the corresponding parent amines 1-4 and with the aid of substituent parameters. The results indicate the presence of an equilibrium mixture of boat forms B1 and B2 for Z isomers of 5-8. For the E isomers of 5-8, boat form B1 is predicted to be the major conformer. The piperidin-4-ones 1-4 exist in normal chair conformations with equatorial orientations of all the substituents.
International Nuclear Information System (INIS)
A measuring system is disclosed for surveying and very accurately positioning objects with respect to a reference line. A principal use of this surveying system is for accurately aligning the electromagnets which direct a particle beam emitted from a particle accelerator. Prior art surveying systems require highly skilled surveyors. Prior art systems include, for example, optical surveying systems which are susceptible to operator reading errors, and celestial navigation-type surveying systems, with their inherent complexities. The present invention provides an automatic readout micrometer which can very accurately measure distances. The invention has a simplicity of operation which practically eliminates the possibilities of operator optical reading error, owning to the elimination of traditional optical alignments for making measurements. The invention has an extendable arm which carries a laser surveying target. The extendable arm can be continuously positioned over its entire length of travel by either a coarse or fine adjustment without having the fine adjustment outrun the coarse adjustment until a reference laser beam is centered on the target as indicated by a digital readout. The length of the micrometer can then be accurately and automatically read by a computer and compared with a standardized set of alignment measurements. Due to its construction, the micrometer eliminates any errors due to temperature changes when the system is operated within a standard operating temperature range
Automatic personnel contamination monitor
International Nuclear Information System (INIS)
United Nuclear Industries, Inc. (UNI) has developed an automatic personnel contamination monitor (APCM), which uniquely combines the design features of both portal and hand and shoe monitors. In addition, this prototype system also has a number of new features, including: micro computer control and readout, nineteen large area gas flow detectors, real-time background compensation, self-checking for system failures, and card reader identification and control. UNI's experience in operating the Hanford N Reactor, located in Richland, Washington, has shown the necessity of automatically monitoring plant personnel for contamination after they have passed through the procedurally controlled radiation zones. This final check ensures that each radiation zone worker has been properly checked before leaving company controlled boundaries. Investigation of the commercially available portal and hand and shoe monitors indicated that they did not have the sensitivity or sophistication required for UNI's application, therefore, a development program was initiated, resulting in the subject monitor. Field testing shows good sensitivity to personnel contamination with the majority of alarms showing contaminants on clothing, face and head areas. In general, the APCM has sensitivity comparable to portal survey instrumentation. The inherit stand-in, walk-on feature of the APCM not only makes it easy to use, but makes it difficult to bypass. (author)
Some Progress in Conformal Geometry
Directory of Open Access Journals (Sweden)
Sun-Yung A. Chang
2007-12-01
Full Text Available This is a survey paper of our current research on the theory of partial differential equations in conformal geometry. Our intention is to describe some of our current works in a rather brief and expository fashion. We are not giving a comprehensive survey on the subject and references cited here are not intended to be complete. We introduce a bubble tree structure to study the degeneration of a class of Yamabe metrics on Bach flat manifolds satisfying some global conformal bounds on compact manifolds of dimension 4. As applications, we establish a gap theorem, a finiteness theorem for diffeomorphism type for this class, and diameter bound of the $sigma_2$-metrics in a class of conformal 4-manifolds. For conformally compact Einstein metrics we introduce an eigenfunction compactification. As a consequence we obtain some topological constraints in terms of renormalized volumes.
"Induced" N=4 conformal supergravity
Buchbinder, I L; Tseytlin, A A
2012-01-01
We consider an abelian N=4 super Yang-Mills theory coupled to background N=4 conformal supergravity fields. At the classical level, this coupling is invariant under global SU(1,1) transformation of the complex ("dilaton-axion") supergravity scalar combined with an on-shell vector-vector duality. We compute the divergent part of the corresponding quantum effective action found by integrating over the super Yang-Mills fields and demonstrate its SU(1,1) invariance. This divergent part related to the conformal anomaly is one-loop exact and should be given by the N=4 conformal supergravity action containing the Weyl tensor squared term. This allows us to determine the full non-linear form of the bosonic part of the N=4 conformal supergravity action which has manifest SU(1,1) invariance.
National Automated Conformity Inspection Process
Department of Transportation — The National Automated Conformity Inspection Process (NACIP) Application is intended to expedite the workflow process as it pertains to the FAA Form 81 0-10 Request...
Conformation Distributions in Adsorbed Proteins.
Meuse, Curtis W.; Hubbard, Joseph B.; Vrettos, John S.; Smith, Jackson R.; Cicerone, Marcus T.
2007-03-01
While the structural basis of protein function is well understood in the biopharmaceutical and biotechnology industries, few methods for the characterization and comparison of protein conformation distributions are available. New methods capable of measuring the stability of protein conformations and the integrity of protein-protein, protein-ligand and protein-surface interactions both in solution and on surfaces are needed to help the development of protein-based products. We are developing infrared spectroscopy methods for the characterization and comparison of molecular conformation distributions in monolayers and in solutions. We have extracted an order parameter describing the orientational and conformational variations of protein functional groups around the average molecular values from a single polarized spectrum. We will discuss the development of these methods and compare them to amide hydrogen/deuterium exchange methods for albumin in solution and on different polymer surfaces to show that our order parameter is related to protein stability.
Scalar perturbations and conformal transformation
International Nuclear Information System (INIS)
The non-minimal coupling of gravity to a scalar field can be transformed into a minimal coupling through a conformal transformation. We show how to connect the results of a perturbation calculation, performed around a Friedman-Robertson-Walker background solution, before and after the conformal transformation. We work in the synchronous gauge, but we discuss the implications of employing other frames. (author). 16 refs
Conformal Gravity on Noncommutative Spacetime
Kober, Martin
2011-01-01
Conformal gravity on noncommutative spacetime is considered in this paper. The presupposed gravity action consists of the Brans-Dicke gravity action with a special prefactor of the term, where the Ricci scalar couples to the scalar field, to maintain local conformal invariance and the Weyl gravity action. The commutation relations between the coordinates defining the noncommutative geometry are assumed to be of canonical shape. Based on the moyal star product, products of fields depending on ...
A topological and conformational stability alphabet for multipass membrane proteins.
Feng, Xiang; Barth, Patrick
2016-03-01
Multipass membrane proteins perform critical signal transduction and transport across membranes. How transmembrane helix (TMH) sequences encode the topology and conformational flexibility regulating these functions remains poorly understood. Here we describe a comprehensive analysis of the sequence-structure relationships at multiple interacting TMHs from all membrane proteins with structures in the Protein Data Bank (PDB). We found that membrane proteins can be deconstructed in interacting TMH trimer units, which mostly fold into six distinct structural classes of topologies and conformations. Each class is enriched in recurrent sequence motifs from functionally unrelated proteins, revealing unforeseen consensus and evolutionary conserved networks of stabilizing interhelical contacts. Interacting TMHs' topology and local protein conformational flexibility were remarkably well predicted in a blinded fashion from the identified binding-hotspot motifs. Our results reveal universal sequence-structure principles governing the complex anatomy and plasticity of multipass membrane proteins that may guide de novo structure prediction, design, and studies of folding and dynamics. PMID:26780406
Falsification of Mannheim's conformal gravity
Yoon, Youngsub
2013-01-01
We show that Mannheim's conformal gravity, whose potential has a term proportional to $1/r$ and another term proportional to $r$, doesn't reduce to Newtonian gravity at short distances. Therefore, despite the claim that it successfully explains galaxy rotation curves, it seems falsified by numerous Cavendish-type experiments performed at laboratories on Earth whose work haven't found any deviations from Newton's theory. Moreover, when Mannheim used his potential to fit the galaxy rotation curve, he used the Newtonian formula to calculate the effects of the term proportional to $1/r$, not the conformal gravity one. So, he lacked consistency. After all, he would not have been able to use the conformal gravity one either since it deviates so much from the Newtonian one, which the conformal gravity one should reduce to. We also give a couple of other similar reasons why Mannheim's conformal gravity is wrong. For example, the gravitational potential of conformal gravity doesn't reduce to the Newtonian one even in ...
Pattern-Driven Automatic Parallelization
Directory of Open Access Journals (Sweden)
Christoph W. Kessler
1996-01-01
Full Text Available This article describes a knowledge-based system for automatic parallelization of a wide class of sequential numerical codes operating on vectors and dense matrices, and for execution on distributed memory message-passing multiprocessors. Its main feature is a fast and powerful pattern recognition tool that locally identifies frequently occurring computations and programming concepts in the source code. This tool also works for dusty deck codes that have been "encrypted" by former machine-specific code transformations. Successful pattern recognition guides sophisticated code transformations including local algorithm replacement such that the parallelized code need not emerge from the sequential program structure by just parallelizing the loops. It allows access to an expert's knowledge on useful parallel algorithms, available machine-specific library routines, and powerful program transformations. The partially restored program semantics also supports local array alignment, distribution, and redistribution, and allows for faster and more exact prediction of the performance of the parallelized target code than is usually possible.
Automatic Speaker Recognition System
Directory of Open Access Journals (Sweden)
Parul,R. B. Dubey
2012-12-01
Full Text Available Spoken language is used by human to convey many types of information. Primarily, speech convey message via words. Owing to advanced speech technologies, people's interactions with remote machines, such as phone banking, internet browsing, and secured information retrieval by voice, is becoming popular today. Speaker verification and speaker identification are important for authentication and verification in security purpose. Speaker identification methods can be divided into text independent and text-dependent. Speaker recognition is the process of automatically recognizing speaker voice on the basis of individual information included in the input speech waves. It consists of comparing a speech signal from an unknown speaker to a set of stored data of known speakers. This process recognizes who has spoken by matching input signal with pre- stored samples. The work is focussed to improve the performance of the speaker verification under noisy conditions.
Directory of Open Access Journals (Sweden)
P.KEERTHANAA, K.JEEVITHA, V.NAVINA, G.INDIRA, S.JAYAMANI
2013-07-01
Full Text Available The Primary Aim Of The Project Is To Design, Develop And Implement Automatic Wall Painting Robot Which Helps To Achieve Low Cost Painting Equipment. Despite The Advances In Robotics And Its Wide Spreading Applications, Interior Wall Painting Has Shared Little In Research Activities. The Painting Chemicals Can Cause Hazards To The Human Painters Such As Eye And Respiratory System Problems. Also The Nature Of Painting Procedure That Requires Repeated Work And Hand Rising Makes It Boring, Time And Effort Consuming. When Construction Workers And Robots Are Properly Integrated In Building Tasks, The Whole Construction Process Can Be Better Managed And Savings In Human Labour And Timing Are Obtained As A Consequence. In Addition, It Would Offer The Opportunity To Reduce Or Eliminate Human Exposure To Difficult And Hazardous Environments, Which Would Solve Most Of The Problems Connected With Safety When Many Activities Occur At The Same Time. These Factors Motivate The Development Of An Automated Robotic Painting System.
Automatic alkaloid removal system.
Yahaya, Muhammad Rizuwan; Hj Razali, Mohd Hudzari; Abu Bakar, Che Abdullah; Ismail, Wan Ishak Wan; Muda, Wan Musa Wan; Mat, Nashriyah; Zakaria, Abd
2014-01-01
This alkaloid automated removal machine was developed at Instrumentation Laboratory, Universiti Sultan Zainal Abidin Malaysia that purposely for removing the alkaloid toxicity from Dioscorea hispida (DH) tuber. It is a poisonous plant where scientific study has shown that its tubers contain toxic alkaloid constituents, dioscorine. The tubers can only be consumed after it poisonous is removed. In this experiment, the tubers are needed to blend as powder form before inserting into machine basket. The user is need to push the START button on machine controller for switching the water pump ON by then creating turbulence wave of water in machine tank. The water will stop automatically by triggering the outlet solenoid valve. The powders of tubers are washed for 10 minutes while 1 liter of contaminated water due toxin mixture is flowing out. At this time, the controller will automatically triggered inlet solenoid valve and the new water will flow in machine tank until achieve the desire level that which determined by ultra sonic sensor. This process will repeated for 7 h and the positive result is achieved and shows it significant according to the several parameters of biological character ofpH, temperature, dissolve oxygen, turbidity, conductivity and fish survival rate or time. From that parameter, it also shows the positive result which is near or same with control water and assuming was made that the toxin is fully removed when the pH of DH powder is near with control water. For control water, the pH is about 5.3 while water from this experiment process is 6.0 and before run the machine the pH of contaminated water is about 3.8 which are too acid. This automated machine can save time for removing toxicity from DH compared with a traditional method while less observation of the user. PMID:24783795
CONFORMANCE IMPROVEMENT USING GELS
Energy Technology Data Exchange (ETDEWEB)
Randall S. Seright
2003-09-01
This report describes work performed during the second year of the project, ''Conformance Improvement Using Gels.'' The project has two objectives. The first objective is to identify gel compositions and conditions that substantially reduce flow through fractures that allow direct channeling between wells, while leaving secondary fractures open so that high fluid injection and production rates can be maintained. The second objective is to optimize treatments in fractured production wells, where the gel must reduce permeability to water much more than that to oil. Pore-level images from X-ray computed microtomography were re-examined for Berea sandstone and porous polyethylene. This analysis suggests that oil penetration through gel-filled pores occurs by a gel-dehydration mechanism, rather than a gel-ripping mechanism. This finding helps to explain why aqueous gels can reduce permeability to water more than to oil. We analyzed a Cr(III)-acetate-HPAM gel treatment in a production well in the Arbuckle formation. The availability of accurate pressure data before, during, and after the treatment was critical for the analysis. After the gel treatment, water productivity was fairly constant at about 20% of the pre-treatment value. However, oil productivity was stimulated by a factor of 18 immediately after the treatment. During the six months after the treatment, oil productivity gradually decreased to approach the pre-treatment value. To explain this behavior, we proposed that the fracture area open to oil flow was increased substantially by the gel treatment, followed by a gradual closing of the fractures during subsequent production. For a conventional Cr(III)-acetate-HPAM gel, the delay between gelant preparation and injection into a fracture impacts the placement, leakoff, and permeability reduction behavior. Formulations placed as partially formed gels showed relatively low pressure gradients during placement, and yet substantially reduced the
Christian Religiosity, Self-Control and Social Conformity
Welch, Michael R.; Tittle, Charles R.; Grasmick, Harold G.
2006-01-01
Survey data from a southwestern metropolitan area are used to analyze whether the ability of personal Christian religiosity to predict social conformity is spuriously due to self-control. Results indicate that both personal religiosity and self-control display statistically significant, independent negative net relationships with many forms of…
Conformal anomaly c-coefficients of superconformal 6d theories
Beccaria, Matteo; Tseytlin, Arkady A.
2016-01-01
We propose general relations between the conformal anomaly and the chiral (R-symmetry and gravitational) anomaly coefficients in 6d (1, 0) superconformal theories. The suggested expressions for the three type B conformal anomaly c i -coefficients complement the expression for the type A anomaly a-coefficient found in arXiv:1506.03807. We check them on several examples — the standard (1, 0) hyper and tensor multiplets as well as some higher derivative short multiplets containing vector fields that generalize the super-conformal 6d vector multiplet discussed in arXiv:1506.08727. We also consider a family of higher derivative superconformal (2, 0) 6d multiplets associated to 7d multiplets in the KK spectrum of 11d supergravity compactified on S 4. In particular, we prove that (2,0) 6d conformal supergravity coupled to 26 tensor multiplets is free of all chiral and conformal anomalies. We discuss some interacting (1, 0) superconformal theories, predicting the c i -coefficients for the "E-string" theory on multiple M5-branes at E 8 9-brane and for the theory describing M5-branes at an orbifold singularity {C}^2/Γ . Finally, we elaborate on holographic computation of subleading corrections to conformal anomaly coefficients coming from R 2 + R 3 terms in 7d effective action, revisiting, in particular, the (2,0) theory case.
Enthalpy Differences of the n-Pentane Conformers.
Csontos, József; Nagy, Balázs; Gyevi-Nagy, László; Kállay, Mihály; Tasi, Gyula
2016-06-14
The energy and enthalpy differences of alkane conformers in various temperature ranges have been the subject for both experimental and theoretical studies over the last few decades. It was shown previously for the conformers of butane [G. Tasi et al., J. Chem. Theory Comput. 2012, 8, 479-486] that quantum chemical results can compete with spectroscopic techniques and results obtained even from the most carefully performed experiments could be biased due to the improper statistical model utilized to evaluate the raw experimental data. In the current study, on one hand, the experimental values and their uncertainties for the enthalpy differences for pentane conformers are re-evaluated using the appropriate statistical model. On the other hand, a coupled-cluster-based focal-point analysis has been performed to calculate energy and enthalpy differences for the conformers of pentane. The model chemistry defined in this study includes contributions up to the perturbative quadruple excitations augmented with further small correction terms beyond the Born-Oppenheimer and nonrelativistic approximations. Benchmark quality energy and enthalpy differences for the pentane conformers are given at temperatures 0 and 298.15 K as well as for the various temperature ranges used in the gas-phase experimental measurements. Furthermore, a slight positive shift for the experimental enthalpy differences is also predicted due to an additional Raman active band belonging to the gauche-gauche conformer. PMID:27096811
Conformal Window and Correlation Functions in Lattice Conformal QCD
Iwasaki, Y
2012-01-01
We discuss various aspects of Conformal Field Theories on the Lattice. We investigate the SU(3) gauge theory with Nf fermions in the fundamental representation. First we make a brief review of our previous works on the phase structure of lattice gauge theories in terms of the gauge coupling constant and the quark mass. We thereby clarify the reason why we conjecture that the conformal window is 7 = 1 exhibit the characteristics of the conformal function with IR cutoff, an exponential damping with power correction. Investigating our numerical data by a new method, the "micro-analysis" of propagators, we observe that our data are consistent with the picture that the Nf=7 case and the Nf=2 at T ~ 2Tc case are close to the meson unparticle model. On the other hand, the Nf=16 case and the Nf=2 at T= 10^2 ~10^5 Tc cases are close to the fermion unparticle model.
Conformation and interactions of dopamine hydrochloride in solution
Energy Technology Data Exchange (ETDEWEB)
Callear, Samantha K.; Imberti, Silvia [ISIS Facility, STFC Rutherford Appleton Laboratory, Harwell Oxford, Didcot OX11 0QX (United Kingdom); Johnston, Andrew; McLain, Sylvia E. [Biochemistry Department, University of Oxford, South Parks Road, Oxford OX1 3QU (United Kingdom)
2015-01-07
The aqueous solution of dopamine hydrochloride has been investigated using neutron and X-ray total scattering data together with Monte-Carlo based modelling using Empirical Potential Structure Refinement. The conformation of the protonated dopamine molecule is presented and the results compared to the conformations found in crystal structures, dopamine-complexed protein crystal structures and predicted from theoretical calculations and pharmacophoric models. It is found that protonated dopamine adopts a range of conformations in solution, highlighting the low rotational energy barrier between different conformations, with the preferred conformation being trans-perpendicular. The interactions between each of the species present (protonated dopamine molecules, water molecules, and chloride anions) have been determined and are discussed with reference to interactions observed in similar systems both in the liquid and crystalline state, and predicted from theoretical calculations. The expected strong hydrogen bonds between the strong hydrogen bond donors and acceptors are observed, together with evidence of weaker CH hydrogen bonds and π interactions also playing a significant role in determining the arrangement of adjacent molecules.
Conformation and interactions of dopamine hydrochloride in solution
International Nuclear Information System (INIS)
The aqueous solution of dopamine hydrochloride has been investigated using neutron and X-ray total scattering data together with Monte-Carlo based modelling using Empirical Potential Structure Refinement. The conformation of the protonated dopamine molecule is presented and the results compared to the conformations found in crystal structures, dopamine-complexed protein crystal structures and predicted from theoretical calculations and pharmacophoric models. It is found that protonated dopamine adopts a range of conformations in solution, highlighting the low rotational energy barrier between different conformations, with the preferred conformation being trans-perpendicular. The interactions between each of the species present (protonated dopamine molecules, water molecules, and chloride anions) have been determined and are discussed with reference to interactions observed in similar systems both in the liquid and crystalline state, and predicted from theoretical calculations. The expected strong hydrogen bonds between the strong hydrogen bond donors and acceptors are observed, together with evidence of weaker CH hydrogen bonds and π interactions also playing a significant role in determining the arrangement of adjacent molecules
Automatic Implantable Cardiac Defibrillator
Full Text Available ... technology, and Halifax Health’s commitment to provide quality healthcare for all patients. "OR Live" makes it easy ... the maximum predictable heart rate is 220 minus age. And then we can take 10 from them, ...
Automatic Detection of Dominance and Expected Interest
Directory of Open Access Journals (Sweden)
M. Teresa Anguera
2010-01-01
Full Text Available Social Signal Processing is an emergent area of research that focuses on the analysis of social constructs. Dominance and interest are two of these social constructs. Dominance refers to the level of influence a person has in a conversation. Interest, when referred in terms of group interactions, can be defined as the degree of engagement that the members of a group collectively display during their interaction. In this paper, we argue that only using behavioral motion information, we are able to predict the interest of observers when looking at face-to-face interactions as well as the dominant people. First, we propose a simple set of movement-based features from body, face, and mouth activity in order to define a higher set of interaction indicators. The considered indicators are manually annotated by observers. Based on the opinions obtained, we define an automatic binary dominance detection problem and a multiclass interest quantification problem. Error-Correcting Output Codes framework is used to learn to rank the perceived observer's interest in face-to-face interactions meanwhile Adaboost is used to solve the dominant detection problem. The automatic system shows good correlation between the automatic categorization results and the manual ranking made by the observers in both dominance and interest detection problems.
Making automatic differentiation truly automatic : coupling PETSc with ADIC
International Nuclear Information System (INIS)
Despite its name, automatic differentiation (AD) is often far from an automatic process. often one must specify independent and dependent variables, indicate the derivative quantities to be computed, and perhaps even provide information about the structure of the Jacobians or Hessians being computed. However, when AD is used in conjunction with a toolkit with well-defined interfaces, many of these issues do not arise. They describe recent research into coupling the ADIC automatic differentiation tool with PETSc, a toolkit for the parallel numerical solution of PDEs. This research leverages the interfaces and objects of PETSc to make the AD process very nearly transparent
Melanie Caroline Steffens; Elena Yundina; Markus Panning
2008-01-01
If sexual offence (rape or sexual abuse) has aspects of automatic rather than controlled behavior in the sense of being triggered by situational cues, it might be predicted better by reaction-time measures of automatic cognition rather than by questionnaires. Two Implicit Association Tests (IATs) were used to test whether male pedophile and sadistic offenders (N = 46) differ from each other and from a male control group (N = 47) with regard to their automatic associations of erotic. The first...
Automatic CT simulation optimization for radiation therapy: A general strategy
Energy Technology Data Exchange (ETDEWEB)
Li, Hua, E-mail: huli@radonc.wustl.edu; Chen, Hsin-Chen; Tan, Jun; Gay, Hiram; Michalski, Jeff M.; Mutic, Sasa [Department of Radiation Oncology, Washington University, St. Louis, Missouri 63110 (United States); Yu, Lifeng [Department of Radiology, Mayo Clinic, Rochester, Minnesota 55905 (United States); Anastasio, Mark A. [Department of Biomedical Engineering, Washington University, St. Louis, Missouri 63110 (United States); Low, Daniel A. [Department of Radiation Oncology, University of California Los Angeles, Los Angeles, California 90095 (United States)
2014-03-15
Purpose: In radiation therapy, x-ray computed tomography (CT) simulation protocol specifications should be driven by the treatment planning requirements in lieu of duplicating diagnostic CT screening protocols. The purpose of this study was to develop a general strategy that allows for automatically, prospectively, and objectively determining the optimal patient-specific CT simulation protocols based on radiation-therapy goals, namely, maintenance of contouring quality and integrity while minimizing patient CT simulation dose. Methods: The authors proposed a general prediction strategy that provides automatic optimal CT simulation protocol selection as a function of patient size and treatment planning task. The optimal protocol is the one that delivers the minimum dose required to provide a CT simulation scan that yields accurate contours. Accurate treatment plans depend on accurate contours in order to conform the dose to actual tumor and normal organ positions. An image quality index, defined to characterize how simulation scan quality affects contour delineation, was developed and used to benchmark the contouring accuracy and treatment plan quality within the predication strategy. A clinical workflow was developed to select the optimal CT simulation protocols incorporating patient size, target delineation, and radiation dose efficiency. An experimental study using an anthropomorphic pelvis phantom with added-bolus layers was used to demonstrate how the proposed prediction strategy could be implemented and how the optimal CT simulation protocols could be selected for prostate cancer patients based on patient size and treatment planning task. Clinical IMRT prostate treatment plans for seven CT scans with varied image quality indices were separately optimized and compared to verify the trace of target and organ dosimetry coverage. Results: Based on the phantom study, the optimal image quality index for accurate manual prostate contouring was 4.4. The optimal tube
Automatic CT simulation optimization for radiation therapy: A general strategy
International Nuclear Information System (INIS)
Purpose: In radiation therapy, x-ray computed tomography (CT) simulation protocol specifications should be driven by the treatment planning requirements in lieu of duplicating diagnostic CT screening protocols. The purpose of this study was to develop a general strategy that allows for automatically, prospectively, and objectively determining the optimal patient-specific CT simulation protocols based on radiation-therapy goals, namely, maintenance of contouring quality and integrity while minimizing patient CT simulation dose. Methods: The authors proposed a general prediction strategy that provides automatic optimal CT simulation protocol selection as a function of patient size and treatment planning task. The optimal protocol is the one that delivers the minimum dose required to provide a CT simulation scan that yields accurate contours. Accurate treatment plans depend on accurate contours in order to conform the dose to actual tumor and normal organ positions. An image quality index, defined to characterize how simulation scan quality affects contour delineation, was developed and used to benchmark the contouring accuracy and treatment plan quality within the predication strategy. A clinical workflow was developed to select the optimal CT simulation protocols incorporating patient size, target delineation, and radiation dose efficiency. An experimental study using an anthropomorphic pelvis phantom with added-bolus layers was used to demonstrate how the proposed prediction strategy could be implemented and how the optimal CT simulation protocols could be selected for prostate cancer patients based on patient size and treatment planning task. Clinical IMRT prostate treatment plans for seven CT scans with varied image quality indices were separately optimized and compared to verify the trace of target and organ dosimetry coverage. Results: Based on the phantom study, the optimal image quality index for accurate manual prostate contouring was 4.4. The optimal tube
Lectures on Conformal Field Theory
Qualls, Joshua D
2015-01-01
These lectures notes are based on courses given at National Taiwan University, National Chiao-Tung University, and National Tsing Hua University in the spring term of 2015. Although the course was offered primarily for graduate students, these lecture notes have been prepared for a more general audience. They are intended as an introduction to conformal field theories in various dimensions, with applications related to topics of particular interest: topics include the conformal bootstrap program, boundary conformal field theory, and applications related to the AdS/CFT correspondence. We assume the reader to be familiar with quantum mechanics at the graduate level and to have some basic knowledge of quantum field theory. Familiarity with string theory is not a prerequisite for this lectures, although it can only help.
Renyi entropy and conformal defects
Energy Technology Data Exchange (ETDEWEB)
Bianchi, Lorenzo [Humboldt-Univ. Berlin (Germany). Inst. fuer Physik; Hamburg Univ. (Germany). II. Inst. fuer Theoretische Physik; Meineri, Marco [Scuola Normale Superiore, Pisa (Italy); Perimeter Institute for Theoretical Physics, Waterloo, ON (Canada); Istituto Nazionale di Fisica Nucleare, Pisa (Italy); Myers, Robert C. [Perimeter Institute for Theoretical Physics, Waterloo, ON (Canada); Smolkin, Michael [California Univ., Berkely, CA (United States). Center for Theoretical Physics and Department of Physics
2016-04-18
We propose a field theoretic framework for calculating the dependence of Renyi entropies on the shape of the entangling surface in a conformal field theory. Our approach rests on regarding the corresponding twist operator as a conformal defect and in particular, we define the displacement operator which implements small local deformations of the entangling surface. We identify a simple constraint between the coefficient defining the two-point function of the displacement operator and the conformal weight of the twist operator, which consolidates a number of distinct conjectures on the shape dependence of the Renyi entropy. As an example, using this approach, we examine a conjecture regarding the universal coefficient associated with a conical singularity in the entangling surface for CFTs in any number of spacetime dimensions. We also provide a general formula for the second order variation of the Renyi entropy arising from small deformations of a spherical entangling surface, extending Mezei's results for the entanglement entropy.
Conformal Mapping for Multiple Terminals
Wang, Weimin; Wang, Qiang; Ren, Hao
2015-01-01
Conformal mapping is an important mathematical tool in many physical and engineering fields, especially in electrostatics, fluid mechanics, classical mechanics, and transformation optics. However in the existing textbooks and literatures, it is only adopted to solve the problems which have only two terminals. Two terminals with electric potential differences, pressure difference, optical path difference, etc., can be mapped conformally onto a solvable structure, e.g., a rectangle, where the two terminals are mapped onto two opposite edges of the rectangle. Here we show a conformal mapping method for multiple terminals, which is more common in practical applications. Through accurate analysis of the boundary conditions, additional terminals or boundaries are folded in the inner of the mapped rectangle. Then the solution will not be influenced. The method is described in several typical situations and two application examples are detailed. The first example is an electrostatic actuator with three electrodes. A ...
Automatic Kurdish Dialects Identification
Directory of Open Access Journals (Sweden)
Hossein Hassani
2016-02-01
Full Text Available Automatic dialect identification is a necessary Lan guage Technology for processing multi- dialect languages in which the dialects are linguis tically far from each other. Particularly, this becomes crucial where the dialects are mutually uni ntelligible. Therefore, to perform computational activities on these languages, the sy stem needs to identify the dialect that is the subject of the process. Kurdish language encompasse s various dialects. It is written using several different scripts. The language lacks of a standard orthography. This situation makes the Kurdish dialectal identification more interesti ng and required, both form the research and from the application perspectives. In this research , we have applied a classification method, based on supervised machine learning, to identify t he dialects of the Kurdish texts. The research has focused on two widely spoken and most dominant Kurdish dialects, namely, Kurmanji and Sorani. The approach could be applied to the other Kurdish dialects as well. The method is also applicable to the languages which are similar to Ku rdish in their dialectal diversity and differences.
Features of a Simple IR Conformal Gauge Theory
Landa-Marban, David; Hip, Ivan
2013-01-01
The Schwinger model with $N_{f} \\geq 2$ flavors is a simple example for an IR conformal gauge theory. We consider numerical data for two light flavors, based on simulations with dynamical chiral lattice fermions. We test properties and predictions that were put forward for IR conformal models in the recent literature. In particular we probe the decorrelation of low lying Dirac eigenvalues, and we discuss the mass anomalous dimension and its IR extrapolation. Here we encounter subtleties, which may urge caution with analogous efforts in other models, such as multi-flavor QCD.
QCD in curved space-time: a conformal bag model
Kharzeev, Dima E; Tuchin, K L
2004-01-01
We construct an effective low energy Lagrangian of gluodynamics which (i) satisfies all constraints imposed by the Renormalization Group; (ii) is scale and conformally invariant in the limit of vanishing vacuum energy density; (iii) matches onto the perturbative theory at short distances. This effective theory has a dual description as classical gluodynamics on a curved conformal background. Color fields are dynamically confined, and the strong coupling freezes at distances larger than the glueball size. We also make specific predictions (in particular, on the Nc dependence of glueball properties) which can be tested in lattice simulations of gluodynamics.
Epigenetic dominance of prion conformers.
Directory of Open Access Journals (Sweden)
Eri Saijo
2013-10-01
Full Text Available Although they share certain biological properties with nucleic acid based infectious agents, prions, the causative agents of invariably fatal, transmissible neurodegenerative disorders such as bovine spongiform encephalopathy, sheep scrapie, and human Creutzfeldt Jakob disease, propagate by conformational templating of host encoded proteins. Once thought to be unique to these diseases, this mechanism is now recognized as a ubiquitous means of information transfer in biological systems, including other protein misfolding disorders such as those causing Alzheimer's and Parkinson's diseases. To address the poorly understood mechanism by which host prion protein (PrP primary structures interact with distinct prion conformations to influence pathogenesis, we produced transgenic (Tg mice expressing different sheep scrapie susceptibility alleles, varying only at a single amino acid at PrP residue 136. Tg mice expressing ovine PrP with alanine (A at (OvPrP-A136 infected with SSBP/1 scrapie prions propagated a relatively stable (S prion conformation, which accumulated as punctate aggregates in the brain, and produced prolonged incubation times. In contrast, Tg mice expressing OvPrP with valine (V at 136 (OvPrP-V136 infected with the same prions developed disease rapidly, and the converted prion was comprised of an unstable (U, diffusely distributed conformer. Infected Tg mice co-expressing both alleles manifested properties consistent with the U conformer, suggesting a dominant effect resulting from exclusive conversion of OvPrP-V136 but not OvPrP-A136. Surprisingly, however, studies with monoclonal antibody (mAb PRC5, which discriminates OvPrP-A136 from OvPrP-V136, revealed substantial conversion of OvPrP-A136. Moreover, the resulting OvPrP-A136 prion acquired the characteristics of the U conformer. These results, substantiated by in vitro analyses, indicated that co-expression of OvPrP-V136 altered the conversion potential of OvPrP-A136 from the S to
Conformal restriction: the chordal case
Lawler, Gregory; Schramm, Oded; Werner, Wendelin
2002-01-01
We characterize and describe all random subsets $K$ of a given simply connected planar domain (the upper half-plane $\\H$, say) which satisfy the ``conformal restriction'' property, i.e., $K$ connects two fixed boundary points (0 and $\\infty$, say) and the law of $K$ conditioned to remain in a simply connected open subset $D$ of $\\H$ is identical to that of $\\Phi(K)$, where $\\Phi$ is a conformal map from $\\H$ onto $D$ with $\\Phi(0)=0$ and $\\Phi(\\infty)=\\infty$. The construction of this family ...
Nonlocal gravity: Conformally flat spacetimes
Bini, Donato
2016-01-01
The field equations of the recent nonlocal generalization of Einstein's theory of gravitation are presented in a form that is reminiscent of general relativity. The implications of the nonlocal field equations are studied in the case of conformally flat spacetimes. Even in this simple case, the field equations are intractable. Therefore, to gain insight into the nature of these equations, we investigate the structure of nonlocal gravity in two-dimensional spacetimes. While any smooth 2D spacetime is conformally flat and satisfies Einstein's field equations, only a subset containing either a Killing vector or a homothetic Killing vector can satisfy the field equations of nonlocal gravity.
Electronic amplifiers for automatic compensators
Polonnikov, D Ye
1965-01-01
Electronic Amplifiers for Automatic Compensators presents the design and operation of electronic amplifiers for use in automatic control and measuring systems. This book is composed of eight chapters that consider the problems of constructing input and output circuits of amplifiers, suppression of interference and ensuring high sensitivity.This work begins with a survey of the operating principles of electronic amplifiers in automatic compensator systems. The succeeding chapters deal with circuit selection and the calculation and determination of the principal characteristics of amplifiers, as
Automatic Implantable Cardiac Defibrillator
Full Text Available ... like to the heart with the maximum predictable heart rate is 220 minus age. And then we can ... delivering a shock to the heat restore the heart rate or restore somebody’s heart? Is like we reset ...
Domingos, Sérgio R; Roeters, Steven J; Amirjalayer, Saeed; Yu, Zhilin; Hecht, Stefan; Woutersen, Sander
2013-10-28
The backbone conformation of amphiphilic oligo(azobenzene) foldamers is investigated using vibrational circular dichroism (VCD) spectroscopy on a mode involving the stretching of the N=N bonds in the backbone. From denaturation experiments, we find that the VCD response in the helical conformation arises mainly from through-space interaction between the N=N-stretch transition-dipole moments, so that the coupled-oscillator model can be used to predict the VCD spectrum associated with a particular conformation. Using this approach, we elucidate the origin of the VCD signals in the folded conformation, and can assign the observed partial loss of VCD signals upon photo-induced unfolding to specific conformational changes. Our results show that the N=N-stretch VCD response provides an excellent probe of the helical conformation of the N=N bonds in this type of switchable molecular system. PMID:24018416
Twistor spinors and extended conformal superalgebras
Ertem, Ümit
2016-01-01
We show that the first-order symmetry operators of twistor spinors can be constructed from conformal Killing-Yano forms in constant curvature backgrounds and from normal conformal Killing-Yano forms in Einstein manifolds. We express the conditions on conformal Killing-Yano forms to obtain mutually commuting symmetry operators of twistor spinors. Conformal superalgebras which consist of conformal Killing vectors and twistor spinors and play important roles in supersymmetric field theories in conformal backgrounds are extended to more general superalgebras by using the graded Lie algebra structure of conformal Killing-Yano forms and the symmetry operators of twistor spinors. The even part of the extended conformal superalgebra corresponds to conformal Killing-Yano forms and the odd part consists of twistor spinors.
Youth Conformity Regarding Institutions and Media
Directory of Open Access Journals (Sweden)
Nikolay Ivantchev
2012-10-01
Full Text Available An experiment on conformity was carried out. The participants were 95 youths. The scale “Conformity – Autonomy” from I. Karagiozov’s questionnaire for locus of control (1998 was also used. The results indicated the prevalence of youth conformity regarding institutions and media. The different types of conformity were related to each other. The subjects’ gender and the experimentators’ gender mediated the connections between the both types of conformity. The female youths conformed more with institutions than the male youths, but there were not any significant gender differences in their conform behavior regarding media (magazines. More male youths conformed for the magazines when the experimentator was a woman. More female youths conformed for the magazines when the experimentator was a man.
The Role of Automatic Obesity Stereotypes in Real Hiring Discrimination
Agerstrom, Jens; Rooth, Dan-Olof
2011-01-01
This study examined whether automatic stereotypes captured by the implicit association test (IAT) can predict real hiring discrimination against the obese. In an unobtrusive field experiment, job applications were sent to a large number of real job vacancies. The applications were matched on credentials but differed with respect to the applicant's…
Automatic quantification of subarachnoid hemorrhage on noncontrast CT
Boers, A.M.; Zijlstra, I.A.; Gathier, C.S.; Berg, van den R.; Slump, C.H.; Marquering, H.A.; Majoie, C.B.
2014-01-01
Quantification of blood after SAH on initial NCCT is an important radiologic measure to predict patient outcome and guide treatment decisions. In current scales, hemorrhage volume and density are not accounted for. The purpose of this study was to develop and validate a fully automatic method for SA
Conformation of pyrrolidine nucleotide analogues
Czech Academy of Sciences Publication Activity Database
Pohl, Radek; Poštová Slavětínská, Lenka; Rejman, Dominik
Brno : -, 2013 - (Novotný, J.; Marek, R.). C12-C12 ISBN 978-80-86441-44-3. [NMR Valtice /28./. 21.04.2013-24.04.2013, Valtice] R&D Projects: GA ČR GA13-24880S Institutional support: RVO:61388963 Keywords : conformation * NMR * pyrrolidine Subject RIV: CC - Organic Chemistry
Exceptional and Spinorial Conformal Windows
DEFF Research Database (Denmark)
Mojaza, Matin; Pica, Claudio; Ryttov, Thomas; Sannino, Francesco
2012-01-01
We study the conformal window of gauge theories containing fermionic matter fields, where the gauge group is any of the exceptional groups with the fermions transforming according to the fundamental and adjoint representations and the orthogonal groups where the fermions transform according to a...
Defects in conformal field theory
Billò, Marco; Gonçalves, Vasco; Lauria, Edoardo; Meineri, Marco
2016-04-01
We discuss consequences of the breaking of conformal symmetry by a flat or spherical extended operator. We adapt the embedding formalism to the study of correlation functions of symmetric traceless tensors in the presence of the defect. Two-point functions of a bulk and a defect primary are fixed by conformal invariance up to a set of OPE coefficients, and we identify the allowed tensor structures. A correlator of two bulk primaries depends on two cross-ratios, and we study its conformal block decomposition in the case of external scalars. The Casimir equation in the defect channel reduces to a hypergeometric equation, while the bulk channel blocks are recursively determined in the light-cone limit. In the special case of a defect of codimension two, we map the Casimir equation in the bulk channel to the one of a four-point function without defect. Finally, we analyze the contact terms of the stress-tensor with the extended operator, and we deduce constraints on the CFT data. In two dimensions, we relate the displacement operator, which appears among the contact terms, to the reflection coefficient of a conformal interface, and we find unitarity bounds for the latter.
Temperature: Human Regulating, Ants Conforming
Clopton, Joe R.
2007-01-01
Biological processes speed up as temperature rises. Procedures for demonstrating this with ants traveling on trails, and data gathered by students on the Argentine ant ("Linepithema humile") are presented. The concepts of temperature regulation and conformity are detailed with a focus on the processes rather than on terms that label the organisms.
A sampling approach for protein backbone fragment conformations.
Yu, J Y; Zhang, W
2013-01-01
In protein structure prediction, backbone fragment bias information can narrow down the conformational space of the whole polypeptide chain significantly. Unlike existing methods that use fragments as building blocks, the paper presents a probabilistic sampling approach for protein backbone torsion angles by modelling angular correlation of (phi, psi) with a directional statistics distribution. Given a protein sequence and secondary structure information, this method samples backbone fragments conformations by using a backtrack sampling algorithm for the hidden Markov model with multiple inputs and a single output. The proposed approach is applied to a fragment library, and some well-known structural motifs are sampled very well on the optimal path. Computational results show that the method can help to obtain native-like backbone fragments conformations. PMID:23777175
Clothes Dryer Automatic Termination Evaluation
Energy Technology Data Exchange (ETDEWEB)
TeGrotenhuis, Ward E.
2014-10-01
Volume 2: Improved Sensor and Control Designs Many residential clothes dryers on the market today provide automatic cycles that are intended to stop when the clothes are dry, as determined by the final remaining moisture content (RMC). However, testing of automatic termination cycles has shown that many dryers are susceptible to over-drying of loads, leading to excess energy consumption. In particular, tests performed using the DOE Test Procedure in Appendix D2 of 10 CFR 430 subpart B have shown that as much as 62% of the energy used in a cycle may be from over-drying. Volume 1 of this report shows an average of 20% excess energy from over-drying when running automatic cycles with various load compositions and dryer settings. Consequently, improving automatic termination sensors and algorithms has the potential for substantial energy savings in the U.S.
Prospects for de-automatization.
Kihlstrom, John F
2011-06-01
Research by Raz and his associates has repeatedly found that suggestions for hypnotic agnosia, administered to highly hypnotizable subjects, reduce or even eliminate Stroop interference. The present paper sought unsuccessfully to extend these findings to negative priming in the Stroop task. Nevertheless, the reduction of Stroop interference has broad theoretical implications, both for our understanding of automaticity and for the prospect of de-automatizing cognition in meditation and other altered states of consciousness. PMID:20356765
Process automatization in system administration
Petauer, Janja
2013-01-01
The aim of the thesis is to present automatization of user management in company Studio Moderna. The company has grown exponentially in recent years, that is why we needed to find faster, easier and cheaper way of man- aging user accounts. We automatized processes of creating, changing and removing user accounts within Active Directory. We prepared user interface inside of existing application, used Java Script for drop down menus, wrote script in scripting programming langu...
Automatic Number Plate Recognition System
Rajshree Dhruw; Dharmendra Roy
2014-01-01
Automatic Number Plate Recognition (ANPR) is a mass surveillance system that captures the image of vehicles and recognizes their license number. The objective is to design an efficient automatic authorized vehicle identification system by using the Indian vehicle number plate. In this paper we discus different methodology for number plate localization, character segmentation & recognition of the number plate. The system is mainly applicable for non standard Indian number plates by recognizing...
Eating as an Automatic Behavior
Deborah A. Cohen, MD, MPH; Thomas A. Farley, MD, MPH
2007-01-01
The continued growth of the obesity epidemic at a time when obesity is highly stigmatizing should make us question the assumption that, given the right information and motivation, people can successfully reduce their food intake over the long term. An alternative view is that eating is an automatic behavior over which the environment has more control than do individuals. Automatic behaviors are those that occur without awareness, are initiated without intention, tend to continue without contr...
Automatic analysis of double coronal mass ejections from coronagraph images
Jacobs, Matthew; Chang, Lin-Ching; Pulkkinen, Antti; Romano, Michelangelo
2015-11-01
Coronal mass ejections (CMEs) can have major impacts on man-made technology and humans, both in space and on Earth. These impacts have created a high interest in the study of CMEs in an effort to detect and track events and forecast the CME arrival time to provide time for proper mitigation. A robust automatic real-time CME processing pipeline is greatly desired to avoid laborious and subjective manual processing. Automatic methods have been proposed to segment CMEs from coronagraph images and estimate CME parameters such as their heliocentric location and velocity. However, existing methods suffered from several shortcomings such as the use of hard thresholding and an inability to handle two or more CMEs occurring within the same coronagraph image. Double-CME analysis is a necessity for forecasting the many CME events that occur within short time frames. Robust forecasts for all CME events are required to fully understand space weather impacts. This paper presents a new method to segment CME masses and pattern recognition approaches to differentiate two CMEs in a single coronagraph image. The proposed method is validated on a data set of 30 halo CMEs, with results showing comparable ability in transient arrival time prediction accuracy and the new ability to automatically predict the arrival time of a double-CME event. The proposed method is the first automatic method to successfully calculate CME parameters from double-CME events, making this automatic method applicable to a wider range of CME events.
Fake Conformal Symmetry in Unimodular Gravity
Oda, Ichiro
2016-01-01
We study Weyl symmetry (local conformal symmetry) in unimodular gravity. It is shown that the Noether currents for both Weyl symmetry and global scale symmetry, identically vanish as in the conformally invariant scalar-tensor gravity. We clearly explain why in the class of conformally invariant gravitational theories, the Noether currents vanish by starting with the conformally invariant scalar-tensor gravity. Moreover, we comment on both classical and quantum-mechanical equivalences among Einstein's general relativity, the conformally invariant scalar-tensor gravity and the Weyl-transverse (WTDiff) gravity. Finally, we discuss the Weyl current in the conformally invariant scalar action and see that it is also vanishing.
Conformal Field Theories: From Old to New
de Boer, Jan; Halpern, M. B.
1998-01-01
In a short review of recent work, we discuss the general problem of constructing the actions of new conformal field theories from old conformal field theories. Such a construction follows when the old conformal field theory admits new conformal stress tensors in its chiral algebra, and it turns out that the new conformal field theory is generically a new spin-two gauge theory. As an example we discuss the new spin-two gauged sigma models which arise in this fashion from the general conformal ...
Jones, Manon W; Snowling, Margaret J; Moll, Kristina
2016-03-01
Reading fluency is often predicted by rapid automatized naming (RAN) speed, which as the name implies, measures the automaticity with which familiar stimuli (e.g., letters) can be retrieved and named. Readers with dyslexia are considered to have less "automatized" access to lexical information, reflected in longer RAN times compared with nondyslexic readers. We combined the RAN task with a Stroop-switch manipulation to test the automaticity of dyslexic and nondyslexic readers' lexical access directly within a fluency task. Participants named letters in 10 × 4 arrays while eye movements and speech responses were recorded. Upon fixation, specific letter font colors changed from black to a different color, whereupon the participant was required to rapidly switch from naming the letter to naming the letter color. We could therefore measure reading group differences on "automatic" lexical processing, insofar as it was task-irrelevant. Readers with dyslexia showed obligatory lexical processing and a timeline for recognition that was overall similar to typical readers, but a delay emerged in the output (naming) phase. Further delay was caused by visual-orthographic competition between neighboring stimuli. Our findings outline the specific processes involved when researchers speak of "impaired automaticity" in dyslexic readers' fluency, and are discussed in the context of the broader literature in this field. (PsycINFO Database Record PMID:26414305
Minimal Conformal Extensions of the Higgs Sector
Helmboldt, Alexander J; Lindner, Manfred; Smirnov, Juri
2016-01-01
In this work we find the minimal extension of the Standard Model's Higgs sector which can lead to a light Higgs boson via radiative symmetry breaking and is consistent with the phenomenological requirements for a low-energy realization of a conformal theory. The model which turns out to be stable under renormalization group translations is an extension of the Standard Model by two scalar fields, one of which acquires a finite vacuum expectation value and therefore mixes into the physical Higgs. We find that the minimal model predicts a sizable amount of mixing which makes it testable at a collider. In addition to the physical Higgs, the theory's scalar spectrum contains one light and one heavy boson. The heavy scalar's properties render it a potential dark matter candidate.
Conformal invariance in the quantum field theory
International Nuclear Information System (INIS)
Basic features concerning the present knowledge of conformal symmetry are illustrated in a simple model. Composite field dimensions of this model are computed and related to the conformal group. (author)
Gel dosimetry for conformal radiotherapy
International Nuclear Information System (INIS)
With the continuum development of conformal radio therapies, aimed at delivering high dose to tumor tissue and low dose to the healthy tissue around, the necessities has appeared of suitable improvement of dosimetry techniques giving the possibility of obtaining dose images to be compared with diagnostic images. Also if wide software has been developed for calculating dose distributions in the fields of various radiotherapy units, experimental verifications are necessary, in particular in the case of complex geometries in conformal radiotherapy. Gel dosimetry is a promising method for imaging the absorbed dose in tissue-equivalent phantoms, with the possibility of 3D reconstruction of the spatial dose distribution, with milli metric resolution. Optical imaging of gel dosimeters, based on visible light absorbance analysis, has shown to be a reliable technique for achieving dose distributions. (Author)
Conformally symmetric massive discrete fields
De Souza, M M
2000-01-01
Conformal symmetry is taken as an attribute of theories of massless fields in manifolds with specific dimensionalities. This paper shows that this is not an absolute truth; it is a consequence of the mathematical representation used for the physical interactions. It introduces a new kind of representation where the propagation of massive (invariant mass) and massless interactions are unifiedly described by a single conformally symmetric Green's function. Sources and fields are treated at a same footing, symmetrically, as discrete fields - the fields in this new representation - fields defined with support on straight lines embedded in a (3+1)-Minkowski manifold. The discrete field turns out to be a point in phase space. It is finite everywhere. With a finite number of degrees of freedom it does not share the well known problems faced by the standard continuous formalism which can be retrieved from the discrete one by an integration over a hypersurface. The passage from discrete to continuous fields illuminate...
Entropy current in conformal hydrodynamics
International Nuclear Information System (INIS)
In recent work [1, 2], the energy-momentum tensor for the N = 4 SYM fluid was computed up to second derivative terms using holographic methods. The aim of this note is to propose an entropy current (accurate up to second derivative terms) consistent with this energy-momentum tensor and to explicate its relation with the existing theories of relativistic hydrodynamics. In order to achieve this, we first develop a Weyl-covariant formalism which simplifies the study of conformal hydrodynamics. This naturally leads us to a proposal for the entropy current of an arbitrary conformal fluid in any spacetime (with d>3). In particular, this proposal translates into a definite expression for the entropy flux in the case of N = 4 SYM fluid. We conclude this note by comparing the formalism presented here with the conventional Israel-Stewart formalism.
Conformal methods in general relativity
Valiente Kroon, Juan A
2016-01-01
This book offers a systematic exposition of conformal methods and how they can be used to study the global properties of solutions to the equations of Einstein's theory of gravity. It shows that combining these ideas with differential geometry can elucidate the existence and stability of the basic solutions of the theory. Introducing the differential geometric, spinorial and PDE background required to gain a deep understanding of conformal methods, this text provides an accessible account of key results in mathematical relativity over the last thirty years, including the stability of de Sitter and Minkowski spacetimes. For graduate students and researchers, this self-contained account includes useful visual models to help the reader grasp abstract concepts and a list of further reading, making this the perfect reference companion on the topic.
Conformal Bootstrap in Mellin Space
Gopakumar, Rajesh; Sen, Kallol; Sinha, Aninda
2016-01-01
We propose a new approach towards analytically solving for the dynamical content of Conformal Field Theories (CFTs) using the bootstrap philosophy. This combines the original bootstrap idea of Polyakov with the modern technology of the Mellin representation of CFT amplitudes. We employ exchange Witten diagrams with built in crossing symmetry as our basic building blocks rather than the conventional conformal blocks in a particular channel. Demanding consistency with the operator product expansion (OPE) implies an infinite set of constraints on operator dimensions and OPE coefficients. We illustrate the power of this method in the epsilon expansion of the Wilson-Fisher fixed point by computing operator dimensions and, strikingly, OPE coefficients to higher orders in epsilon than currently available using other analytic techniques (including Feynman diagram calculations). Our results enable us to get a somewhat better agreement of certain observables in the 3d Ising model, with the precise numerical values that...
The Conformational Behaviour of Glucosamine
Peña, Isabel; Kolesniková, Lucie; Cabezas, Carlos; Bermúdez, Celina; Berdakin, Matías; Simao, Alcides; Alonso, José L.
2014-06-01
A laser ablation method has been successfully used to vaporize the bioactive amino monosaccharide D-glucosamine. Three cyclic α-4C1 pyranose forms have been identified using a combination of CP-FTMW and LA-MB-FTMW spectroscopy. Stereoelectronic hyperconjugative factors, like those associated with anomeric or gauche effects, as well as the cooperative OH\\cdotsO, OH\\cdotsN and NH\\cdotsO chains, extended along the entire molecule, are the main factors driving the conformational behavior. All observed conformers exhibit a counter-clockwise arrangement (cc) of the network of intramolecular hydrogen bonds. The results are compared with those recently obtained for D-glucose. J. L. Alonso, M. A. Lozoya, I. Peña, J. C. López, C. Cabezas, S. Mata, S. Blanco, Chem. Sci. 2014, 5, 515.
Conformal gravity and "gravitational bubbles"
Berezin, V A; Eroshenko, Yu N
2015-01-01
We describe the general structure of the spherically symmetric solutions in the Weyl conformal gravity. The corresponding Bach equations are derived for the special type of metrics, which can be considered as the representative of the general class. The complete set of the pure vacuum solutions, consisting of two classes, is found. The first one contains the solutions with constant two-dimensional curvature scalar, and the representatives are the famous Robertson--Walker metrics. We called one of them the "gravitational bubbles", which is compact and with zero Weyl tensor. These "gravitational bubbles" are the pure vacuum curved space-times (without any material sources, including the cosmological constant), which are absolutely impossible in General Relativity. This phenomenon makes it easier to create the universe from "nothing". The second class consists of the solutions with varying curvature scalar. We found its representative as the one-parameter family, which can be conformally covered by the thee-para...
Bazso, Gabor; Najbauer, Eszter E.; Magyarfalvi, Gabor; Tarczay, Gyorgy
2013-06-01
We review our recent results on combined matrix isolation FT-IR and NIR laser irradiation studies on glycine alanine, and cysteine. The OH and the NH stretching overtones of the low-energy conformers of these amino acids deposited in Ar, Kr, Xe, and N_{2} matrices were irradiated. At the expense of the irradiated conformer, other conformers were enriched and new, high-energy, formerly unobserved conformers were formed in the matrices. This enabled the separation and unambiguous assignment of the vibrational transitions of the different conformers. The main conversion paths and their efficiencies are described qualitatively showing that there are significant differences in different matrices. It was shown that the high-energy conformer decays in the matrix by H-atom tunneling. The lifetimes of the high-energy conformers in different matrices were measured. Based on our results we conclude that some theoretically predicted low-energy conformers of amino acids are likely even absent in low-energy matrices due to fast H-atom tunneling. G. Bazso, G. Magyarfalvi, G. Tarczay J. Mol. Struct. 1025 (Light-Induced Processes in Cryogenic Matrices Special Issue) 33-42 (2012). G. Bazso, G. Magyarfalvi, G. Tarczay J. Phys. Chem. A 116 (43) 10539-10547 (2012). G. Bazso, E. E. Najbauer, G. Magyarfalvi, G. Tarczay J. Phys. Chem. A in press, DOI: 10.1021/jp400196b. E. E. Najbauer, G. Bazso, G. Magyarfalvi, G. Tarczay in preparation.
Conformity, Equity and Correlated Equilibrium
Edward Cartwright; Myrna Wooders
2008-01-01
We explore the potential for correlated equilibrium to capture conformity to norms and the coordination of behavior within social groups. Given a partition of players into social groups we propose three properties one may expect of a correlated equilibrium: within-group anonymity, group independence and stereotyped beliefs. Within-group anonymity requires that players within the same social group have equal opportunities and equal payoffs. Group independence requires that there be no correlat...
Notes on Conformal Invisibility Devices
Leonhardt, Ulf
2006-01-01
As a consequence of the wave nature of light, invisibility devices based on isotropic media cannot be perfect. The principal distortions of invisibility are due to reflections and time delays. Reflections can be made exponentially small for devices that are large in comparison with the wavelength of light. Time delays are unavoidable and will result in wave-front dislocations. This paper considers invisibility devices based on optical conformal mapping. The paper shows that the time delays do...
Anomalous Dimensions of Conformal Baryons
Pica, Claudio
2016-01-01
We determine the anomalous dimensions of baryon operators for the three color theory as function of the number of massless flavours within the conformal window to the maximum known order in perturbation theory. We show that the anomalous dimension of the baryon is controllably small for a wide range of number of flavours. We also find that this is always smaller than the anomalous dimension of the fermion mass operator. These findings challenge the partial compositeness paradigm.
Conformal properties of pseudoparticle configurations
International Nuclear Information System (INIS)
The known Euclidean Yang-Mills pseudoparticle solutions with Pontryagin index n are parametrized by 5n constants describing the size and location of each pseudoparticle. By insisting on conformal covariance of the solutions, we show that more general solutions exist: they are parametrized by 5n + 4 constants. We further demonstrate that the additional degrees of freedom are not gauge artifacts and correspond to a new degeneracy of pseudoparticle configurations
Electrophysiological precursors of social conformity
Shestakova, Anna; Rieskamp, Jörg; Tugin, Sergey; Ossadtchi, Alexey; Krutitskaya, Janina; Klucharev, Vasily
2013-01-01
Humans often change their beliefs or behavior due to the behavior or opinions of others. This study explored, with the use of human event-related potentials (ERPs), whether social conformity is based on a general performance-monitoring mechanism. We tested the hypothesis that conflicts with a normative group opinion evoke a feedback-related negativity (FRN) often associated with performance monitoring and subsequent adjustment of behavior. The experimental results show that individual judgmen...
Monogenic Functions in Conformal Geometry
Directory of Open Access Journals (Sweden)
Michael Eastwood
2007-08-01
Full Text Available Monogenic functions are basic to Clifford analysis. On Euclidean space they are defined as smooth functions with values in the corresponding Clifford algebra satisfying a certain system of first order differential equations, usually referred to as the Dirac equation. There are two equally natural extensions of these equations to a Riemannian spin manifold only one of which is conformally invariant. We present a straightforward exposition.
Harada, Ryuhei; Nakamura, Tomotake; Shigeta, Yasuteru
2015-10-01
As a strategy for reproducing rare, biologically important events, we previously developed the Outlier FLOODing (OFLOOD) method [J. Comput. Chem. 36 (2015) 97-102]. This method utilizes conformational resampling from rarely occurring states, detected as outliers, to promote conformational transitions relevant to the rare events. However, to perform OFLOOD efficiently requires specifying a set of appropriate reaction coordinates (RCs) with non-trivial specifications. Therefore, in this paper, we propose a strategy to obtain a set of appropriate RCs using a method where the best set of RCs are automatically searched from the initially given RCs, via clustering the states of biomolecules.
Methods for numerical conformal mapping
International Nuclear Information System (INIS)
Nonlinear integral equations for the boundary functions which determine conformal transformations in two dimensions are developed and analyzed. One of these equations has a nonsingular logarithmic kernel and is especially well suited for numerical computations of conformal maps including those which deal with regions having highly distorted boundaries. Numerical procedures based on interspersed Gaussian quadrature for approximating the integrals and a Newton--Raphson technique to solve the resulting nonlinear algebraic equations are described. The Newton--Raphson iteration converges reliably with very crude initial approximations. Numerical examples are given for the mapping of a half-infinite region with periodic boundary onto a half plane, with up to nine-figure accuracy for values of the map function on the boundary and for its first derivatives. The examples include regions bounded by ''spike'' curves characteristic of Rayleigh--Taylor instability phenomena. A differential equation is derived which relates changes of the boundary. This is relevant to potential problems for regions with time-dependent boundaries. Further nonsingular integral formulas are derived for conformal mapping in a variety of geometries and for application to the boundary-value problems of potential theory
Electrophysiological precursors of social conformity.
Shestakova, Anna; Rieskamp, Jörg; Tugin, Sergey; Ossadtchi, Alexey; Krutitskaya, Janina; Klucharev, Vasily
2013-10-01
Humans often change their beliefs or behavior due to the behavior or opinions of others. This study explored, with the use of human event-related potentials (ERPs), whether social conformity is based on a general performance-monitoring mechanism. We tested the hypothesis that conflicts with a normative group opinion evoke a feedback-related negativity (FRN) often associated with performance monitoring and subsequent adjustment of behavior. The experimental results show that individual judgments of facial attractiveness were adjusted in line with a normative group opinion. A mismatch between individual and group opinions triggered a frontocentral negative deflection with the maximum at 200 ms, similar to FRN. Overall, a conflict with a normative group opinion triggered a cascade of neuronal responses: from an earlier FRN response reflecting a conflict with the normative opinion to a later ERP component (peaking at 380 ms) reflecting a conforming behavioral adjustment. These results add to the growing literature on neuronal mechanisms of social influence by disentangling the conflict-monitoring signal in response to the perceived violation of social norms and the neural signal of a conforming behavioral adjustment. PMID:22683703
New potentials for conformal mechanics
International Nuclear Information System (INIS)
We find under some mild assumptions that the most general potential of one-dimensional conformal systems with time-independent couplings is expressed as V = V0 + V1, where V0 is a homogeneous function with respect to a homothetic motion in configuration space and V1 is determined from an equation with source a homothetic potential. Such systems admit at most an SL(2,R) conformal symmetry which, depending on the couplings, is embedded in Diff(R) in three different ways. In one case, SL(2,R) is also embedded in Diff(S1). Examples of such models include those with potential V = αx2 + βx−2 for arbitrary couplings α and β, the Calogero models with harmonic oscillator couplings and nonlinear models with suitable metrics and potentials. In addition, we give the conditions on the couplings for a class of gauge theories to admit a SL(2,R) conformal symmetry. We present examples of such systems with general gauge groups and global symmetries that include the isometries of AdS2 × S3 and AdS2 × S3 × S3 which arise as backgrounds in AdS2/CFT1. (paper)
Defects in conformal field theory
Billò, Marco; Lauria, Edoardo; Meineri, Marco
2016-01-01
We discuss consequences of the breaking of conformal symmetry by a flat or spherical extended operator. We adapt the embedding formalism to the study of correlation functions of symmetric traceless tensors in the presence of the defect. Two-point functions of a bulk and a defect primary are fixed by conformal invariance up to a set of OPE coefficients, and we identify the allowed tensor structures. A correlator of two bulk primaries depends on two cross-ratios, and we study its conformal block decomposition in the case of external scalars. The Casimir equation in the defect channel reduces to a hypergeometric equation, while the bulk channel blocks are recursively determined in the light-cone limit. In the special case of a defect of codimension two, we map the Casimir equation in the bulk channel to the one of a four-point function without defect. Finally, we analyze the contact terms of the stress-tensor with the extended operator, and we deduce constraints on the CFT data. In two dimensions, we relate the ...
Conformally symmetric massive discrete fields
Energy Technology Data Exchange (ETDEWEB)
Souza, Manoelito M. de
2001-04-01
Conformal symmetry is taken as an attribute of theories of massless fields in manifolds with specific dimensions. This paper shows that this is not an absolute truth; it is a consequence of the mathematical representation used for the physical interactions. It introduces a new kind of representation where the propagation of massive (invariant mass) and mass-less interactions are unifiedly described by a single conformally symmetric Green's function. Sources and fields are treated at a same footing, symmetrically, as discrete fields - the fields in this new representation - fields defined with support on straight lines embedded in a (3+1) - Minkowski manifold. The discrete field turns out to be a point in phase space. It is finite everywhere. With a finite number of degrees of freedom it does not share the well known problems faced by the standard continuous formalism which can be retrieved from the discrete one by an integration over a hypersurface. The passage from discrete to continuous fields illuminates the physical meaning and origins of their properties and problems. The price for having massive discrete field with conformal symmetry is of hiding its mass and timelike velocity behind its non-constant proper-time. (author)
Conformational kinetics of aliphatic tails
Ferrarini, Alberta; Moro, Giorgio; Nordio, Pier Luigi
The master equation describing the random walk between sites identified with the stable conformers of a chain molecule, represents the extension to the time domain of the Rotational Isomeric State model. The asymptotic analysis of the multidimensional diffusion equation in the continuous torsional variables subjected to the configurational potential, provides a rigorous justification for the discrete models, and it supplies, without resorting to phenomenological parameters, molecular definitions of the kinetic rates for the conformational transitions occurring at each segment of the chain. The coupling between the torsional variables is fully taken into account, giving rise to cooperative effects. A complete calculation of the specific correlation functions which describe the time evolution of the angular functions probed by N.M.R. and dielectric relaxation measurements, has been performed for alkyl chains attached to a massive core. The resulting behaviour has been compared with the decay of trans and gauche populations of specific bonds, expressed in terms of suitable correlation functions whose time integrals lead quite naturally to the definition of effective kinetic constants for the conformational transitions.
Conformal Invariance of Graphene Sheets
Giordanelli, I.; Posé, N.; Mendoza, M.; Herrmann, H. J.
2016-01-01
Suspended graphene sheets exhibit correlated random deformations that can be studied under the framework of rough surfaces with a Hurst (roughness) exponent 0.72 ± 0.01. Here, we show that, independent of the temperature, the iso-height lines at the percolation threshold have a well-defined fractal dimension and are conformally invariant, sharing the same statistical properties as Schramm-Loewner evolution (SLEκ) curves with κ = 2.24 ± 0.07. Interestingly, iso-height lines of other rough surfaces are not necessarily conformally invariant even if they have the same Hurst exponent, e.g. random Gaussian surfaces. We have found that the distribution of the modulus of the Fourier coefficients plays an important role on this property. Our results not only introduce a new universality class and place the study of suspended graphene membranes within the theory of critical phenomena, but also provide hints on the long-standing question about the origin of conformal invariance in iso-height lines of rough surfaces. PMID:26961723
MIXED SELF-CONFORMAL MULTIFRACTAL MEASURES
Institute of Scientific and Technical Information of China (English)
Meifeng Dai
2009-01-01
Mixed multifractal analysis studies the simultaneous scaling behavior of finitely many measures. A self-conformal measure is a measure invariant under a set of conformal mappings. In this paper, we provide a description of the mixed multifractal theory of finitely many self-conformal measures.
Primordial gravitational waves from conformal gravity
Myung, Yun Soo; Moon, Taeyoon
2014-01-01
We investigate the evolution of cosmological perturbations generated during de Sitter inflation in the conformal gravity. Primordial gravitational waves are composed of vector and tensor modes. We obtain the constant vector and tensor power spectra which seems to be correct because the conformal gravity is invariant under conformal transformation like the Maxwell kinetic term.
Cartan normal conformal connections from differential equations
International Nuclear Information System (INIS)
We explore and show a natural relationship between all third-order ordinary differential equations that possess a vanishing Wunschmann invariant, with conformal metrics on 3-manifolds and Cartan's normal O(3, 2) conformal connections. The generalization to pairs of second-order PDEs and their relationship to Cartan's normal O(4, 2) conformal connections on four-dimensional manifolds is discussed
Conformally Coupled Induced Gravity with Gradient Torsion
Yoon, Yongsung
1999-01-01
It is found that conformally coupled induced gravity with gradient torsion gives a dilaton gravity in Riemann geometry. In the Einstein frame of the dilaton gravity the conformal symmetry is hidden and a non-vanishing cosmological constant is not plausible due to the constraint of the conformal coupling.
On the cohomology of Leibniz conformal algebras
Zhang, Jiao
2015-04-01
We construct a new cohomology complex of Leibniz conformal algebras with coefficients in a representation instead of a module. The low-dimensional cohomology groups of this complex are computed. Meanwhile, we construct a Leibniz algebra from a Leibniz conformal algebra and prove that the category of Leibniz conformal algebras is equivalent to the category of equivalence classes of formal distribution Leibniz algebras.
21 CFR 886.3130 - Ophthalmic conformer.
2010-04-01
... 21 Food and Drugs 8 2010-04-01 2010-04-01 false Ophthalmic conformer. 886.3130 Section 886.3130...) MEDICAL DEVICES OPHTHALMIC DEVICES Prosthetic Devices § 886.3130 Ophthalmic conformer. (a) Identification. An ophthalmic conformer is a device usually made of molded plastic intended to be...
Rodríguez Ortega, P G; Montejo, M; Márquez, F; López González, J J
2015-07-01
A thorough DFT and MM study of the conformational landscape, molecular and electronic structures of (-)-S-anabasine is reported aimed to reveal the mechanism controlling its conformational preference. Although the conformational flexibility and diversity of this system is quite extensive, only two structures are populated both in gas-phase and solution (CCl4 and DMSO). NBO-aided electronic structure analyses performed for the eight conformers representing minima in the potential energy surface of (-)-S-anabasine indicate that both steric and electrostatic factors are determinant in the conformational distribution of the sample in gas phase. Nonetheless, hyperconjugative effects are the key force tipping the balance in the conformational equilibrium between the two main rotamers. Increasing the polarity of the medium (using the IEF-PCM formalism) barely affect the conformational energy profile, although a slight increase in the theoretical population of those structures more affected by electrostatic interactions is predicted. The validity of the theoretical models and calculated conformers populations are endorsed by the accurate reproduction of the IR and VCD spectra (recorded in pure liquid and in CCl4 solution) of the sample (that have been firstly recorded and assigned in the present work) which are consistent with the occurrence of a 2:1 conformational ratio. PMID:26059478
Automatic integration of confidence in the brain valuation signal.
Lebreton, Maël; Abitbol, Raphaëlle; Daunizeau, Jean; Pessiglione, Mathias
2015-08-01
A key process in decision-making is estimating the value of possible outcomes. Growing evidence suggests that different types of values are automatically encoded in the ventromedial prefrontal cortex (VMPFC). Here we extend this idea by suggesting that any overt judgment is accompanied by a second-order valuation (a confidence estimate), which is also automatically incorporated in VMPFC activity. In accordance with the predictions of our normative model of rating tasks, two behavioral experiments showed that confidence levels were quadratically related to first-order judgments (age, value or probability ratings). The analysis of three functional magnetic resonance imaging data sets using similar rating tasks confirmed that the quadratic extension of first-order ratings (our proxy for confidence) was encoded in VMPFC activity, even if no confidence judgment was required of the participants. Such an automatic aggregation of value and confidence in a same brain region might provide insight into many distortions of judgment and choice. PMID:26192748
Automatic Recognition of Facial Actions in Spontaneous Expressions
Directory of Open Access Journals (Sweden)
Marian Stewart Bartlett
2006-09-01
Full Text Available Spontaneous facial expressions differ from posed expressions in both which muscles are moved, and in the dynamics of the movement. Advances in the field of automatic facial expression measurement will require development and assessment on spontaneous behavior. Here we present preliminary results on a task of facial action detection in spontaneous facial expressions. We employ a user independent fully automatic system for real time recognition of facial actions from the Facial Action Coding System (FACS. The system automatically detects frontal faces in the video stream and coded each frame with respect to 20 Action units. The approach applies machine learning methods such as support vector machines and AdaBoost, to texture-based image representations. The output margin for the learned classifiers predicts action unit intensity. Frame-by-frame intensity measurements will enable investigations into facial expression dynamics which were previously intractable by human coding.
A unified conformal model for fundamental interactions without dynamical Higgs field
Pawlowski, M; Marek Pawlowski; Ryszard Raczka
1994-01-01
A Higgsless model for strong, electro-weak and gravitational interactions is proposed. This model is based on the local symmetry group SU(3)xSU(2)xU(1)xC where C is the local conformal symmetry group. The natural minimal conformally invariant form of total lagrangian is postulated. It contains all Standard Model fields and gravitational interaction. Using the unitary gauge and the conformal scale fixing conditions we can eliminate all four real components of the Higgs doublet in this model. However the masses of vector mesons, leptons and quarks are automatically generated and are given by the same formulas as in the conventional Standard Model. The gravitational sector is analyzed and it is shown that the model admits in the classical limit the Einsteinian form of gravitational interactions. No figures.
Feasibility of a high speed treatment planning unit for rotational conformation radiotherapy
International Nuclear Information System (INIS)
Rotational multi-leaf conformation is a standard high precision radiation technique in Japan. It is a combined gantry rotation and movement of multi-leaf collimators to create a similar dose distribution to the target volume. Although treatment planning for this technique is rather simple when compared to further complex techniques such as the non-coplanar technique, it is time and man-power consuming. The authors developed a new type of planning machine for the conformation therapy. Fully automatic field setting based on the beam's-eye-view principle reduces planning time quite drastically. The authors hope that the present planning system will enhance the availability of conformation radiation therapy. (author)
Stress Tensors from Trace Anomalies in Conformal Field Theories
Herzog, Christopher P.; Huang, Kuo-Wei
2013-01-01
Using trace anomalies, we determine the vacuum stress tensors of arbitrary even dimensional conformal field theories in Weyl flat backgrounds. We demonstrate a simple relation between the Casimir energy on the real line times a sphere and the type A anomaly coefficient. This relation generalizes earlier results in two and four dimensions. These field theory results for the Casimir are shown to be consistent with holographic predictions in two, four, and six dimensions.
Annual review in automatic programming
Goodman, Richard
2014-01-01
Annual Review in Automatic Programming focuses on the techniques of automatic programming used with digital computers. Topics covered range from the design of machine-independent programming languages to the use of recursive procedures in ALGOL 60. A multi-pass translation scheme for ALGOL 60 is described, along with some commercial source languages. The structure and use of the syntax-directed compiler is also considered.Comprised of 12 chapters, this volume begins with a discussion on the basic ideas involved in the description of a computing process as a program for a computer, expressed in
Directory of Open Access Journals (Sweden)
Sebastian eSchindler
2015-12-01
Full Text Available The direct assessment of explicit attitudes towards performance enhancing substances, for example Neuroenhancement or doping in sports can be affected by social desirability biases and cheating attempts. According to Dual Process Theories of cognition, indirect measures like the Implicit Association Test (IAT measure automatic associations towards a topic (as opposed to explicit attitudes measured by self-report measures. Such automatic associations are thought to occur rapidly and to evade voluntary control. However, whether or not such indirect tests actually reflect automatic associations is difficult to validate. Electroencephalography´s superior time resolution enables to differentiate between highly automatic compared to more elaborate processing stages. We therefore examined on which processing stages cortical differences between negative or positive attitudes to doping occur, and whether or not these differences can be related to BIAT scores. We tested 42 university students (31 females, 24.43 ± 3.17 years old, who were requested to complete a brief doping IAT (BIAT on attitudes towards doping. Cerebral activity during doping BIAT completion was assessed using high-density EEG. Behaviorally, participants D-scores exhibited negative attitudes towards doping, represented by faster reaction times in the doping + dislike pairing task. Event-related potentials (ERPs revealed earliest effects between 200 and 300ms. Here, a relatively larger occipital positivity was found for the doping + dislike pairing task. Further, in the LPP time range between 400 and 600ms a larger late positive potential was found for the doping + dislike pairing task over central regions. These LPP amplitude differences were successfully predicting participants´ BIAT D-scores.Results indicate that event-related potentials differentiate between positive and negative doping attitudes at stages of mid-latency. However, it seems that IAT scores can be predicted only by
Families and degenerations of conformal field theories
International Nuclear Information System (INIS)
In this work, moduli spaces of conformal field theories are investigated. In the first part, moduli spaces corresponding to current-current deformation of conformal field theories are constructed explicitly. For WZW models, they are described in detail, and sigma model realizations of the deformed WZW models are presented. The second part is devoted to the study of boundaries of moduli spaces of conformal field theories. For this purpose a notion of convergence of families of conformal field theories is introduced, which admits certain degenerated conformal field theories to occur as limits. To such a degeneration of conformal field theories, a degeneration of metric spaces together with additional geometric structures can be associated, which give rise to a geometric interpretation. Boundaries of moduli spaces of toroidal conformal field theories, orbifolds thereof and WZW models are analyzed. Furthermore, also the limit of the discrete family of Virasoro minimal models is investigated. (orig.)
Families and degenerations of conformal field theories
Energy Technology Data Exchange (ETDEWEB)
Roggenkamp, D.
2004-09-01
In this work, moduli spaces of conformal field theories are investigated. In the first part, moduli spaces corresponding to current-current deformation of conformal field theories are constructed explicitly. For WZW models, they are described in detail, and sigma model realizations of the deformed WZW models are presented. The second part is devoted to the study of boundaries of moduli spaces of conformal field theories. For this purpose a notion of convergence of families of conformal field theories is introduced, which admits certain degenerated conformal field theories to occur as limits. To such a degeneration of conformal field theories, a degeneration of metric spaces together with additional geometric structures can be associated, which give rise to a geometric interpretation. Boundaries of moduli spaces of toroidal conformal field theories, orbifolds thereof and WZW models are analyzed. Furthermore, also the limit of the discrete family of Virasoro minimal models is investigated. (orig.)
Improving reservoir conformance using gelled polymer systems
Energy Technology Data Exchange (ETDEWEB)
Green, D.W.; Willhite, G.P.
1993-04-09
The general objectives are to (1) to identify and develop gelled polymer systems which have potential to improve reservoir conformance of fluid displacement processes, (2) to determine the performance of these systems in bulk and in porous media, and (3) to develop methods to predict the capability of these systems to recover oil from petroleum reservoirs. This work focuses on three types of gel systems - an aqueous polysaccharide (KUSPI) system that gels as a function of pH, the chromium-based system where polyacrylamide and xanthan are crosslinked by CR(III) and an organic crosslinked system. Development of the KUSPI system and evaluation and identification of a suitable organic crosslinked system will be done. The laboratory research is directed at the fundamental understanding of the physics and chemistry of the gelation process in bulk form and in porous media. This knowledge will be used to develop conceptual and mathematical models of the gelation process. Mathematical models will then be extended to predict the performance of gelled polymer treatments in oil reservoirs. Accomplishments for this period are presented for the following tasks: development and selection of gelled polymer systems, physical and chemical characterization of gel systems; and mathematical modeling of gel systems.
Conformal Laplacian and Conical Singularities
Botvinnik, Boris; Preston, Serge
2002-01-01
We study a behavior of the conformal Laplacian operator $\\L_g$ on a manifold with \\emph{tame conical singularities}: when each singularity is given as a cone over a product of the standard spheres. We study the spectral properties of the operator $\\L_g$ on such manifolds. We describe the asymptotic of a general solution of the equation $\\L_g u = Q u^{\\alpha}$ with $1\\leq \\alpha\\leq \\frac{n+2}{n-2}$ near each singular point. In particular, we derive the asymptotic of the Yamabe metric near suc...
International Nuclear Information System (INIS)
We study the chiral properties of an SU(3) gauge theory with Nf massless Dirac fermions in the fundamental representation when Nf is increased from 2 to 6. For Nf=2, our lattice simulations lead to a value of /F3, where F is the Nambu-Goldstone-boson decay constant and is the chiral condensate, which agrees with the measured QCD value. For Nf=6, this ratio shows significant enhancement, presaging an even larger enhancement anticipated as Nf increases further, toward the critical value for transition from confinement to infrared conformality.
Automatic Radiation Monitoring in Slovenia
International Nuclear Information System (INIS)
Full text: The automatic radiation monitoring system in Slovenia started in early nineties and now it comprises measurements of: 1. External gamma radiation: For the time being there are forty-three probes with GM tubes integrated into a common automatic network, operated at the SNSA. The probes measure dose rate in 30 minute intervals. 2. Aerosol radioactivity: Three automatic aerosol stations measure the concentration of artificial alpha and beta activity in the air, gamma emitting radionuclides, radioactive iodine 131 in the air (in all chemical forms, - natural radon and thoron progeny, 3. Radon progeny concentration: Radon progeny concentration is measured hourly and results are displayed as the equilibrium equivalent concentrations (EEC), 4. Radioactive deposition measurements: As a support to gamma dose rate measurements - the SNSA developed and installed an automatic measuring station for surface contamination equipped with gamma spectrometry system (with 3x3' NaI(Tl) detector). All data are transferred through the different communication pathways to the SNSA. They are collected in 30 minute intervals. Within these intervals the central computer analyses and processes the collected data, and creates different reports. Every month QA/QC analysis of data is performed, showing the statistics of acquisition errors and availability of measuring results. All results are promptly available at the our WEB pages. The data are checked and daily sent to the EURDEP system at Ispra (Italy) and also to the Austrian, Croatian and Hungarian authorities. (author)
Eating as an Automatic Behavior
Directory of Open Access Journals (Sweden)
Deborah A. Cohen, MD, MPH
2008-01-01
Full Text Available The continued growth of the obesity epidemic at a time when obesity is highly stigmatizing should make us question the assumption that, given the right information and motivation, people can successfully reduce their food intake over the long term. An alternative view is that eating is an automatic behavior over which the environment has more control than do individuals. Automatic behaviors are those that occur without awareness, are initiated without intention, tend to continue without control, and operate efficiently or with little effort. The concept that eating is an automatic behavior is supported by studies that demonstrate the impact of the environmental context and food presentation on eating. The amount of food eaten is strongly influenced by factors such as portion size, food visibility and salience, and the ease of obtaining food. Moreover, people are often unaware of the amount of food they have eaten or of the environmental influences on their eating. A revised view of eating as an automatic behavior, as opposed to one that humans can self-regulate, has profound implications for our response to the obesity epidemic, suggesting that the focus should be less on nutrition education and more on shaping the food environment.
Automatic Association of News Items.
Carrick, Christina; Watters, Carolyn
1997-01-01
Discussion of electronic news delivery systems and the automatic generation of electronic editions focuses on the association of related items of different media type, specifically photos and stories. The goal is to be able to determine to what degree any two news items refer to the same news event. (Author/LRW)
Automatic quantification of iris color
DEFF Research Database (Denmark)
Christoffersen, S.; Harder, Stine; Andersen, J. D.;
2012-01-01
An automatic algorithm to quantify the eye colour and structural information from standard hi-resolution photos of the human iris has been developed. Initially, the major structures in the eye region are identified including the pupil, iris, sclera, and eyelashes. Based on this segmentation, the ...
05501 Summary -- Automatic Performance Analysis
Gerndt, Hans Michael; Malony, Allen; Miller, Barton P.; Nagel, Wolfgang
2006-01-01
The Workshop on Automatic Performance Analysis (WAPA 2005, Dagstuhl Seminar 05501), held December 13-16, 2005, brought together performance researchers, developers, and practitioners with the goal of better understanding the methods, techniques, and tools that are needed for the automation of performance analysis for high performance computing.
Automatic Identification of Metaphoric Utterances
Dunn, Jonathan Edwin
2013-01-01
This dissertation analyzes the problem of metaphor identification in linguistic and computational semantics, considering both manual and automatic approaches. It describes a manual approach to metaphor identification, the Metaphoricity Measurement Procedure (MMP), and compares this approach with other manual approaches. The dissertation then…
Calvete, Esther; Orue, Izaskun; Hankin, Benjamin L
2013-04-01
Cognitive models state that cognitions are organized hierarchically, so that the underlying schemas affect behavior via more automatic, superficial cognitive processes. This study aimed to demonstrate that early maladaptive schemas predict anxious automatic thoughts, and to show that such automatic thoughts act as mediators between schemas and prospective changes in social anxiety symptoms. The study also examined an alternative reverse model in which schemas acted as mediators between automatic thoughts and social anxiety. A total of 1052 adolescents (499 girls and 553 boys; M(age)=13.43; SD(age)=1.29) completed measures of early maladaptive schemas, socially anxious automatic thoughts, and social anxiety symptoms at Times 1, 2, and 3. The results revealed bidirectional longitudinal relationships among schemas and automatic thoughts that were consistent in content (e.g., the disconnection/rejection schemas and automatic thoughts of negative self-concept). Furthermore, the automatic thoughts of anticipatory negative evaluation by others at Time 2 mediated the relationship between the other-directedness schemas at Time 1 and social anxiety symptoms at Time 3. These findings are consistent with hierarchical cognitive models of social anxiety given that deeper schemas predict more surface-level thoughts. They also support that these more surface-level thoughts contribute to perpetuating schemas. Finally, results show that early maladaptive schemas of the other-directedness domain play a relevant role in the development and maintenance of social anxiety. PMID:23602941
Conformal anomaly c-coefficients of superconformal 6d theories
Beccaria, Matteo
2015-01-01
We propose general relations between the conformal anomaly and the chiral (R-symmetry and gravitational) anomaly coefficients in 6d (1,0) superconformal theories. The suggested expressions for the three type B conformal anomaly c-coefficients complement the expression for the type A anomaly a-coefficient found in arXiv:1506.03807. We check them on several examples -- the standard (1,0) hyper and tensor multiplets as well as some higher derivative short multiplets containing vector fields that generalize the superconformal 6d vector multiplet discussed in arXiv:1506.08727. We also consider a family of higher derivative superconformal (2,0) 6d multiplets associated to 7d multiplets in the KK spectrum of 11d supergravity compactified on S^4. In particular, we prove that (2,0) 6d conformal supergravity coupled to 26 tensor multiplets is free of all chiral and conformal anomalies. We discuss some interacting (1,0) superconformal theories, predicting the c-coefficients for the "E-string" theory on multiple M5-brane...
Dosimetric Evaluation of Automatic Segmentation for Adaptive IMRT for Head-and-Neck Cancer
International Nuclear Information System (INIS)
Purpose: Adaptive planning to accommodate anatomic changes during treatment requires repeat segmentation. This study uses dosimetric endpoints to assess automatically deformed contours. Methods and Materials: Sixteen patients with head-and-neck cancer had adaptive plans because of anatomic change during radiotherapy. Contours from the initial planning computed tomography (CT) were deformed to the mid-treatment CT using an intensity-based free-form registration algorithm then compared with the manually drawn contours for the same CT using the Dice similarity coefficient and an overlap index. The automatic contours were used to create new adaptive plans. The original and automatic adaptive plans were compared based on dosimetric outcomes of the manual contours and on plan conformality. Results: Volumes from the manual and automatic segmentation were similar; only the gross tumor volume (GTV) was significantly different. Automatic plans achieved lower mean coverage for the GTV: V95: 98.6 ± 1.9% vs. 89.9 ± 10.1% (p = 0.004) and clinical target volume: V95: 98.4 ± 0.8% vs. 89.8 ± 6.2% (p 3 of the spinal cord 39.9 ± 3.7 Gy vs. 42.8 ± 5.4 Gy (p = 0.034), but no difference for the remaining structures. Conclusions: Automatic segmentation is not robust enough to substitute for physician-drawn volumes, particularly for the GTV. However, it generates normal structure contours of sufficient accuracy when assessed by dosimetric end points.
Conformal inflation coupled to matter
International Nuclear Information System (INIS)
We formulate new conformal models of inflation and dark energy which generalise the Higgs-Dilaton scenario. We embed these models in unimodular gravity whose effect is to break scale invariance in the late time Universe. In the early Universe, inflation occurs close to a maximum of both the scalar potential and the scalar coupling to the Ricci scalar in the Jordan frame. At late times, the dilaton, which decouples from the dynamics during inflation, receives a potential term from unimodular gravity and leads to the acceleration of the Universe. We address two central issues in this scenario. First we show that the Damour-Polyalov mechanism, when non-relativistic matter is present prior to the start of inflation, sets the initial conditions for inflation at the maximum of the scalar potential. We then show that conformal invariance implies that matter particles are not coupled to the dilaton in the late Universe at the classical level. When fermions acquire masses at low energy, scale invariance is broken and quantum corrections induce a coupling between the dilaton and matter which is still small enough to evade the gravitational constraints in the solar system
Maloney, Alexander; Ng, Gim Seng
2016-01-01
We investigate the constraints of crossing symmetry on CFT correlation functions. Four point conformal blocks are naturally viewed as functions on the upper-half plane, on which crossing symmetry acts by PSL(2,Z) modular transformations. This allows us to construct a unique, crossing symmetric function out of a given conformal block by averaging over PSL(2,Z). In some two dimensional CFTs the correlation functions are precisely equal to the modular average of the contributions of a finite number of light states. For example, in the two dimensional Ising and tri-critical Ising model CFTs, the correlation functions of identical operators are equal to the PSL(2,Z) average of the Virasoro vacuum block; this determines the 3 point function coefficients uniquely in terms of the central charge. The sum over PSL(2,Z) in CFT2 has a natural AdS3 interpretation as a sum over semi-classical saddle points, which describe particles propagating along rational tangles in the bulk. We demonstrate this explicitly for the corre...
Conformal invariant two particle processes
International Nuclear Information System (INIS)
For the conformal group (essentially the SO2(n,2)group) in n-dimensional Minkowsi-space homogeneous spaces are studied which can be interpreted as 2-particle configuration spaces, and 2-particle representations are induced (both participants are spin 0 particles). The eigensolutions of the Casimir-operator in momentum space are Clebsch-Gordan coefficients in momentum basis. The separation of a complete set of comuting operators from the Casimir eigenvalue equations results in all cases in differential equations with 2 variables (a direct consequence of the rank 2 of the homogen spaces), which can be classified as 'generalized hypergeometric differential operators in 2 variables' (this type, as the author supposes, has not been delt with in the literature so far). In the second part the classical conform invariant (relativistic) 2-particle problem, corresponding to the common quantum mechanical (or quantum field theoretical) problem, is presented and solved completely. It is shown for example that for participant momentums (reasonable in the classic sens) on the forward - or on the zero cone only scattering and no bound states are found. (orig./WBU)
Holography and Conformal Anomaly Matching
Cabo-Bizet, Alejandro; Narain, K S
2013-01-01
We discuss various issues related to the understanding of the conformal anomaly matching in CFT from the dual holographic viewpoint. First, we act with a PBH diffeomorphism on a generic 5D RG flow geometry and show that the corresponding on-shell bulk action reproduces the Wess-Zumino term for the dilaton of broken conformal symmetry, with the expected coefficient aUV-aIR. Then we consider a specific 3D example of RG flow whose UV asymptotics is normalizable and admits a 6D lifting. We promote a modulus \\rho appearing in the geometry to a function of boundary coordinates. In a 6D description {\\rho} is the scale of an SU(2) instanton. We determine the smooth deformed background up to second order in the space-time derivatives of \\rho and find that the 3D on-shell action reproduces a boundary kinetic term for the massless field \\tau= log(\\rho) with the correct coefficient \\delta c=cUV-cIR. We further analyze the linearized fluctuations around the deformed background geometry and compute the one-point functions ...
Quantifying macromolecular conformational transition pathways
Seyler, Sean; Kumar, Avishek; Thorpe, Michael; Beckstein, Oliver
2015-03-01
Diverse classes of proteins function through large-scale conformational changes that are challenging for computer simulations. A range of fast path-sampling techniques have been used to generate transitions, but it has been difficult to compare paths from (and assess the relative strengths of) different methods. We introduce a comprehensive method (pathway similarity analysis, PSA) for quantitatively characterizing and comparing macromolecular pathways. The Hausdorff and Fréchet metrics (known from computational geometry) are used to quantify the degree of similarity between polygonal curves in configuration space. A strength of PSA is its use of the full information available from the 3 N-dimensional configuration space trajectory without requiring additional specific knowledge about the system. We compare a sample of eleven different methods for the closed-to-open transitions of the apo enzyme adenylate kinase (AdK) and also apply PSA to an ensemble of 400 AdK trajectories produced by dynamic importance sampling MD and the Geometrical Pathways algorithm. We discuss the method's potential to enhance our understanding of transition path sampling methods, validate them, and help guide future research toward deeper physical insights into conformational transitions.
Engineering a hyper-catalytic enzyme by photo-activated conformation modulation
Energy Technology Data Exchange (ETDEWEB)
Agarwal, Pratul K [ORNL
2012-01-01
Enzyme engineering for improved catalysis has wide implications. We describe a novel chemical modification of Candida antarctica lipase B that allows modulation of the enzyme conformation to promote catalysis. Computational modeling was used to identify dynamical enzyme regions that impact the catalytic mechanism. Surface loop regions located distal to active site but showing dynamical coupling to the reaction were connected by a chemical bridge between Lys136 and Pro192, containing a derivative of azobenzene. The conformational modulation of the enzyme was achieved using two sources of light that alternated the azobenzene moiety in cis and trans conformations. Computational model predicted that mechanical energy from the conformational fluctuations facilitate the reaction in the active-site. The results were consistent with predictions as the activity of the engineered enzyme was found to be enhanced with photoactivation. Preliminary estimations indicate that the engineered enzyme achieved 8-52 fold better catalytic activity than the unmodulated enzyme.
Conboy, Gary
2016-04-26
We consider the roles of heteroatoms (mainly nitrogen, the halogens and the chalcogens) in dictating the conformation of linear conjugated molecules and polymers through non-covalent intramolecular interactions. Whilst hydrogen bonding is a competitive and sometimes more influential interaction, we provide unambiguous evidence that heteroatoms are able to determine the conformation of such materials with reasonable predictability.
Microwave spectrum, structure, tautomeric, and conformational composition of 4-vinylimidazole
Godfrey, Peter D.; Robertson, Evan G.
2012-08-01
The microwave spectra of the two conformers each, of the 1H and 3H tautomers of 4-vinylimidazole, have been measured in the 48-72 GHz spectral region. The 4-vinylimidazole was generated in situ by the facile decarboxylation of urocanic acid at its vaporization temperature of 220 °C. The recognition of this reaction casts doubt on the reliability of a previous published spectroscopic study apparently mistakenly thought to be of uncontaminated vaporized urocanic acid, a natural product of great interest in skin cancer etiology. Quantum chemical theoretical predictions of the structures of each of ten possible conformers/tautomers of urocanic acid and four of 4-vinylimidazole were performed at the ab initio MP2/cc-pVTZ level, with vibrational predictions at the B3LYP/cc-pVTZ and M062X/cc-pVTZ levels. The predicted values of rotational constants for all the urocanic acid species were found to be quite inconsistent with those of the four observed spectra. For the 4-vinylimidazole isomers, the calculated relative energies suggested that all four species would have substantial equilibrium mole fractions at 220 °C. The isomers were identified by matching the observed and calculated rotational constants. The resulting assignment was found to be consistent with the predicted and observed 14N nuclear quadrupole hyperfine multiplet patterns for a suitable rotational transition, and with the observed versus empirically calculated inertial defects. With one exception, the predicted structures were found to be planar. Resembling the case of 1-vinylimidazole, where one conformer is nonplanar, one isomer of 4-vinylimidazole was found to be quasiplanar. This seems to belong to a class of spontaneous symmetry-breaking observed in the molecular structure of some otherwise planar vinyl aromatic compounds.
Domingos, S.R.; Roeters, S.J.; Amirjalayer, S.; Yu, Z.L.; Hecht, S; Woutersen, S.
2013-01-01
The backbone conformation of amphiphilic oligo(azobenzene) foldamers is investigated using vibrational circular dichroism (VCD) spectroscopy on a mode involving the stretching of the N=N bonds in the backbone. From denaturation experiments, we find that the VCD response in the helical conformation arises mainly from through-space interaction between the N=N-stretch transition-dipole moments, so that the coupled-oscillator model can be used to predict the VCD spectrum associated with a particu...
Conformation of comb liquid crystal polymers by neutron small angle scattering
International Nuclear Information System (INIS)
A review is made of the direct information obtained by small angle neutron scattering about the anisotropy of the components parallel and perpendicular to the orienting magnetic field of the radius of gyration of comb like liquid crystal polymers. The behaviour of the conformation versus temperature is reported for several samples. Until now all samples show an oblate conformation in the smectic phase and probably the whole range of the nematic phase. The results are compared with the available theoretical predictions
TASI Lectures on the Conformal Bootstrap
Simmons-Duffin, David
2016-01-01
These notes are from courses given at TASI and the Advanced Strings School in summer 2015. Starting from principles of quantum field theory and the assumption of a traceless stress tensor, we develop the basics of conformal field theory, including conformal Ward identities, radial quantization, reflection positivity, the operator product expansion, and conformal blocks. We end with an introduction to numerical bootstrap methods, focusing on the 2d and 3d Ising models.
Conformation sensitive charge transport in conjugated polymers
Andersson, Mattias; Hedstrom, Svante; Persson, Petter
2013-01-01
Temperature dependent charge carrier mobility measurements using field effect transistors and density functional theory calculations are combined to show how the conformation dependent frontier orbital delocalization influences the hole-and electron mobilities in a donor-acceptor based polymer. A conformationally sensitive lowest unoccupied molecular orbital results in an electron mobility that decreases with increasing temperature above room temperature, while a conformationally stable highe...
Conformal Invariance in Classical Field Theory
Grigore, D. R.
1993-01-01
A geometric generalization of first-order Lagrangian formalism is used to analyse a conformal field theory for an arbitrary primary field. We require that global conformal transformations are Noetherian symmetries and we prove that the action functional can be taken strictly invariant with respect to these transformations. In other words, there does not exists a "Chern-Simons" type Lagrangian for a conformally invariant Lagrangian theory.
Finite Conformal Quantum Gravity and Nonsingular Spacetimes
Modesto, Leonardo; Rachwal, Leslaw
2016-01-01
We explicitly prove that a class of finite quantum gravitational theories (in odd as well as in even dimension) is actually a range of anomaly-free conformally invariant theories in the spontaneously broken phase of the conformal Weyl symmetry. At classical level we show how the Weyl conformal invariance is likely able to tame the spacetime singularities that plague not only Einstein gravity, but also local and weakly non-local higher derivative theories. This latter statement is rigorously p...
Conformal Invariance of Black Hole Temperature
Jacobson, Ted; Kang, Gungwon
1993-01-01
It is shown that the surface gravity and temperature of a stationary black hole are invariant under conformal transformations of the metric that are the identity at infinity. More precisely, we find a conformal invariant definition of the surface gravity of a conformal Killing horizon that agrees with the usual definition(s) for a true Killing horizon and is proportional to the temperature as defined by Hawking radiation. This result is reconciled with the intimate relation between the trace ...
A conformable active matrix LED display
Tripathi, Ashutosh; Smits, Edsger; van der Steen, Jan-Laurens; Cauwe, Maarten; Verplancke, Rik; Myny, Kris; Maas, Joris; Kusters, Roel; Sabik, Sami; Murata, Mitsuhiro; Tomita, Yoshihiro; Ohmae, Hideki; van den Brand, Jeroen; Gelinck, Gerwin
2015-01-01
Conformable and stretchable displays can be integrated on complex surfaces. Such a display can assume the shape of a conformed surface by simultaneous multi-dimensional stretching and bending. Such technology provides new opportunities in the field of display applications, for example wearable displays integrated or embedded in a textile or onto complex surfaces in automotive interiors. In this work we present a conformable active matrix display using LEDs mounted on an amorphous Indium-Galli...
Lattice models and conformal field theories
International Nuclear Information System (INIS)
Theoretical studies concerning the connection between critical physical systems and the conformal theories are reviewed. The conformal theory associated to a critical (integrable) lattice model is derived. The obtention of the central charge, critical exponents and torus partition function, using renormalization group arguments, is shown. The quantum group structure, in the integrable lattice models, and the theory of Visaro algebra representations are discussed. The relations between off-critical integrable models and conformal theories, in finite geometries, are studied
Solving conformal wheel-rail rolling contact problems
Vollebregt, Edwin; Segal, Guus
2014-05-01
The stresses between railway wheels and rails can be computed using different types of contact models: simplified methods, half-space-based boundary element approaches and finite element models. For conformal contact situations, particularly the contact between flange root and rail gauge corner, none of these models work satisfactorily. Finite element methods are too slow, half-space approaches ignore the effects of conformality, and simplified approaches schematise the elasticity of the material even further. This paper presents a thorough investigation of the conformal wheel-rail rolling contact problem. We use CONTACT's boundary element approach together with numerical influence coefficients, that are computed using the finite element approach. The resulting method is fast and detailed and can be embedded into vehicle system dynamics simulation. The results indicate that the contact area is longer and narrower, with smaller area and reduced stiffness, than is predicted by the half-space approach. The predicted maximum pressures are increased by 30%. Finally the longitudinal and lateral forces changed up to 15% of the Coulomb maximum.
Orbital welding automatic pressure test by ODA automatic machines is 35 years old
International Nuclear Information System (INIS)
Development review of technology and equipment of automatic orbital welding with automatic pressures test of nuclear power stations pipelines and different purpose objects is performed. Welding variants with automatic pressure test and different welding automatic machines are described. Priority of national developments is underlined
Superintegrability of $d$-dimensional Conformal Blocks
Isachenkov, Mikhail
2016-01-01
We observe that conformal blocks of scalar 4-point functions in a $d$-dimensional conformal field theory can mapped to eigenfunctions of a 2-particle hyperbolic Calogero-Sutherland Hamiltonian. The latter describes two coupled P\\"oschl-Teller particles. Their interaction, whose strength depends smoothly on the dimension $d$, is known to be superintegrable. Our observation enables us to exploit the rich mathematical literature on Calogero-Sutherland models in deriving various results for conformal field theory. These include an explicit construction of conformal blocks in terms of Heckman-Opdam hypergeometric functions and a remarkable duality that relates the blocks of theories in different dimensions.
Conformal and projective symmetries in Newtonian cosmology
Duval, Christian; Horvathy, Peter
2016-01-01
Definitions of non-relativistic conformal transformations are considered both in the Newton-Cartan and in the Kaluza-Klein-type Eisenhart/Bargmann geometrical frameworks. The symmetry groups that come into play are exemplified by the cosmological, and also the Newton-Hooke solutions of Newton's gravitational field equations. It is shown, in particular, that the maximal symmetry group of the standard cosmological model is isomorphic to the 13-dimensional conformal-Newton-Cartan group whose conformal-Bargmann extension is explicitly worked out. Attention is drawn to the appearance of independent space and time dilations, it contrast with the Schr{\\"o}dinger group or the Conformal Galilei Algebra.
Logarithmic operators and logarithmic conformal field theories
Gurarie, Victor
2013-12-01
Logarithmic operators and logarithmic conformal field theories are reviewed. Prominent examples considered here include c = -2 and c = 0 logarithmic conformal field theories. c = 0 logarithmic conformal field theories are especially interesting since they describe some of the critical points of a variety of longstanding problems involving a two dimensional quantum particle moving in a spatially random potential, as well as critical two dimensional self-avoiding random walks and percolation. Lack of classification of logarithmic conformal field theories remains a major impediment to progress towards finding complete solutions to these problems.
Rotational Spectroscopy Unveils Eleven Conformers of Adrenaline
Cabezas, C.; Cortijo, V.; Mata, S.; Lopez, J. C.; Alonso, J. L.
2013-06-01
Recent improvements in our LA-MB-FTMW instrumentation have allowed the characterization of eleven and eight conformers for the neurotransmitters adrenaline and noradrenaline respectively. The observation of this rich conformational behavior is in accordance with the recent observation of seven conformers for dopamine and in sharp contrast with the conformational reduction proposed for catecholamines. C. Cabezas, I. Peña, J. C. López, J. L. Alonso J. Phys. Chem. Lett. 2013, 4, 486. H. Mitsuda, M. Miyazaki, I. B. Nielsen, P. Carcabal,C. Dedonder, C. Jouvet, S. Ishiuchi, M. Fujii J. Phys. Chem. Lett. 2010, 1, 1130.
Geometrical formulation of the conformal Ward identity
International Nuclear Information System (INIS)
In this paper we use deep ideas in complex geometry that proved to be very powerful in unveiling the Polyakov measure on the moduli space of Riemann surfaces and lead to obtain the partition function of perturbative string theory for 2, 3, 4 loops. Indeed, a geometrical interpretation of the conformal Ward identity in two dimensional conformal field theory is proposed: the conformal anomaly is interpreted as a deformation of the complex structure of the basic Riemann surface. This point of view is in line with the modern trend of geometric quantizations that are based on deformations of classical structures. Then, we solve the conformal Ward identity by using this geometrical formalism. (author)
Fabrication challenges associated with conformal optics
Schaefer, John; Eichholtz, Richard A.; Sulzbach, Frank C.
2001-09-01
A conformal optic is typically an optical window that conforms smoothly to the external shape of a system platform to improve aerodynamics. Conformal optics can be on-axis, such as an ogive missile dome, or off-axis, such as in a free form airplane wing. A common example of conformal optics is the automotive head light window that conforms to the body of the car aerodynamics and aesthetics. The unusual shape of conformal optics creates tremendous challenges for design, manufacturing, and testing. This paper will discuss fabrication methods that have been successfully demonstrated to produce conformal missile domes and associated wavefront corrector elements. It will identify challenges foreseen with more complex free-form configurations. Work presented in this paper was directed by the Precision Conformal Optics Consortium (PCOT). PCOT is comprised of both industrial and academic members who teamed to develop and demonstrate conformal optical systems suitable for insertion into future military programs. The consortium was funded under DARPA agreement number MDA972-96-9-08000.
Conformal invariance conserved quantity of Hamilton systems
Institute of Scientific and Technical Information of China (English)
Cai Jian-Le; Luo Shao-Kai; Mei Feng-Xiang
2008-01-01
This paper studies conformal invariance and comserved quantRies of Hamilton system.The definition and the determining equation of conformal invariance for Hamilton system are provided.The relationship between the conformal invariance and the Lie symmetry are discussed,and the necessary and sufficient condition that the conformal invariance would be the Lie symmetry of the system under the infinitesimal one-parameter transformation group is deduced.It gives the conserved quantities of the system and an example for illustration.
Twistor connection and conformal gravity
International Nuclear Information System (INIS)
The notion of the local twistor connection is introduced. For the Yang-Mills lagrangian of the standard twistor connection (depending on the metric and its first and second partial derivatives) two variational principles are formulated: variations for the connection (leading to 60 equations of which 50 turn out to be zero identically); variations for the metric tensor (leading to 10 equations). It is shown that extreme equations of both variational principles coincide with each other and are equivalent to the vacuum Bach equations of gravity. The modification of the standard twistor connection is suggested (depending also on the Maxwell tensor). It is shown that both variational principles lead again to the same equations, ie. in the this case, to conformally invariant Bach equations of gravity in the presence of the electromagnetic field and to the free Maxwell equations
Conformable eddy current array delivery
Summan, Rahul; Pierce, Gareth; Macleod, Charles; Mineo, Carmelo; Riise, Jonathan; Morozov, Maxim; Dobie, Gordon; Bolton, Gary; Raude, Angélique; Dalpé, Colombe; Braumann, Johannes
2016-02-01
The external surface of stainless steel containers used for the interim storage of nuclear material may be subject to Atmospherically Induced Stress Corrosion Cracking (AISCC). The inspection of such containers poses a significant challenge due to the large quantities involved; therefore, automating the inspection process is of considerable interest. This paper reports upon a proof-of-concept project concerning the automated NDT of a set of test containers containing artificially generated AISCCs. An Eddy current array probe with a conformable padded surface from Eddyfi was used as the NDT sensor and end effector on a KUKA KR5 arc HW robot. A kinematically valid cylindrical raster scan path was designed using the KUKA|PRC path planning software. Custom software was then written to interface measurement acquisition from the Eddyfi hardware with the motion control of the robot. Preliminary results and analysis are presented from scanning two canisters.
A conformal model of gravitons
Donoghue, John F
2016-01-01
In the description of general covariance, the vierbein and the Lorentz connection can be treated as independent fundamental fields. With the usual gauge Lagrangian, the Lorentz connection is characterized by an asymptotically free running coupling. When running from high energy, the coupling gets large at a scale which can be called the Planck mass. If the Lorentz connection is confined at that scale, the low energy theory can have the Einstein Lagrangian induced at low energy through dimensional transmutation. However, in general there will be new divergences in such a theory and the Lagrangian basis should be expanded. I construct a conformally invariant model with a larger basis size which potentially may have the same property.
Approaching Conformality with Ten Flavors
Energy Technology Data Exchange (ETDEWEB)
Appelquist, Thomas; Brower, Richard C.; Buchoff, Michael I.; Cheng, Michael; Cohen, Saul D.; Fleming, George T.; Kiskis, Joe; Lin, Meifeng; Na, Heechang; Neil, Ethan T.; Osborn, James C.
2012-04-01
We present first results for lattice simulations, on a single volume, of the low-lying spectrum of an SU(3) Yang-Mills gauge theory with N{sub f} = 10 light fermions in the fundamental representation. Fits to the fermion mass dependence of various observables are found to be globally consistent with the hypothesis that this theory is within or just outside the strongly-coupled edge of the conformal window, with mass anomalous dimension {gamma}* {approx} 1 over the range of scales simulated. We stress that we cannot rule out the possibility of spontaneous chiral-symmetry breaking at scales well below our infrared cutoff. We discuss important systematic effects, including finite-volume corrections, and consider directions for future improvement.
Automatic Schema Evolution in Root
Institute of Scientific and Technical Information of China (English)
ReneBrun; FonsRademakers
2001-01-01
ROOT version 3(spring 2001) supports automatic class schema evolution.In addition this version also produces files that are self-describing.This is achieved by storing in each file a record with the description of all the persistent classes in the file.Being self-describing guarantees that a file can always be read later,its structure browsed and objects inspected.also when the library with the compiled code of these classes is missing The schema evolution mechanism supports the frequent case when multiple data sets generated with many different class versions must be analyzed in the same session.ROOT supports the automatic generation of C++ code describing the data objects in a file.
Physics of Automatic Target Recognition
Sadjadi, Firooz
2007-01-01
Physics of Automatic Target Recognition addresses the fundamental physical bases of sensing, and information extraction in the state-of-the art automatic target recognition field. It explores both passive and active multispectral sensing, polarimetric diversity, complex signature exploitation, sensor and processing adaptation, transformation of electromagnetic and acoustic waves in their interactions with targets, background clutter, transmission media, and sensing elements. The general inverse scattering, and advanced signal processing techniques and scientific evaluation methodologies being used in this multi disciplinary field will be part of this exposition. The issues of modeling of target signatures in various spectral modalities, LADAR, IR, SAR, high resolution radar, acoustic, seismic, visible, hyperspectral, in diverse geometric aspects will be addressed. The methods for signal processing and classification will cover concepts such as sensor adaptive and artificial neural networks, time reversal filt...
Automatic schema evolution in Root
International Nuclear Information System (INIS)
ROOT version 3 (spring 2001) supports automatic class schema evolution. In addition this version also produces files that are self-describing. This is achieved by storing in each file a record with the description of all the persistent classes in the file. Being self-describing guarantees that a file can always be read later, its structure browsed and objects inspected, also when the library with the compiled code of these classes is missing. The schema evolution mechanism supports the frequent case when multiple data sets generated with many different class versions must be analyzed in the same session. ROOT supports the automatic generation of C++ code describing the data objects in a file
Automatic spikes detection in seismogram
Institute of Scientific and Technical Information of China (English)
王海军; 靳平; 刘贵忠
2003-01-01
@@ Data processing for seismic network is very complex and fussy, because a lot of data is recorded in seismic network every day, which make it impossible to process these data all by manual work. Therefore, seismic data should be processed automatically to produce a initial results about events detection and location. Afterwards, these results are reviewed and modified by analyst. In automatic processing data quality checking is important. There are three main problem data thatexist in real seismic records, which include: spike, repeated data and dropouts. Spike is defined as isolated large amplitude point; the other two problem datahave the same features that amplitude of sample points are uniform in a interval. In data quality checking, the first step is to detect and statistic problem data in a data segment, if percent of problem data exceed a threshold, then the whole data segment is masked and not be processed in the later process.
Automatic registration of satellite imagery
Fonseca, Leila M. G.; Costa, Max H. M.; Manjunath, B. S.; Kenney, C.
1997-01-01
Image registration is one of the basic image processing operations in remote sensing. With the increase in the number of images collected every day from different sensors, automated registration of multi-sensor/multi-spectral images has become an important issue. A wide range of registration techniques has been developed for many different types of applications and data. The objective of this paper is to present an automatic registration algorithm which uses a multiresolution analysis procedure based upon the wavelet transform. The procedure is completely automatic and relies on the grey level information content of the images and their local wavelet transform modulus maxima. The registration algorithm is very simple and easy to apply because it needs basically one parameter. We have obtained very encouraging results on test data sets from the TM and SPOT sensor images of forest, urban and agricultural areas.
Automatic Testcase Generation for Flight Software
Bushnell, David Henry; Pasareanu, Corina; Mackey, Ryan M.
2008-01-01
The TacSat3 project is applying Integrated Systems Health Management (ISHM) technologies to an Air Force spacecraft for operational evaluation in space. The experiment will demonstrate the effectiveness and cost of ISHM and vehicle systems management (VSM) technologies through onboard operation for extended periods. We present two approaches to automatic testcase generation for ISHM: 1) A blackbox approach that views the system as a blackbox, and uses a grammar-based specification of the system's inputs to automatically generate *all* inputs that satisfy the specifications (up to prespecified limits); these inputs are then used to exercise the system. 2) A whitebox approach that performs analysis and testcase generation directly on a representation of the internal behaviour of the system under test. The enabling technologies for both these approaches are model checking and symbolic execution, as implemented in the Ames' Java PathFinder (JPF) tool suite. Model checking is an automated technique for software verification. Unlike simulation and testing which check only some of the system executions and therefore may miss errors, model checking exhaustively explores all possible executions. Symbolic execution evaluates programs with symbolic rather than concrete values and represents variable values as symbolic expressions. We are applying the blackbox approach to generating input scripts for the Spacecraft Command Language (SCL) from Interface and Control Systems. SCL is an embedded interpreter for controlling spacecraft systems. TacSat3 will be using SCL as the controller for its ISHM systems. We translated the SCL grammar into a program that outputs scripts conforming to the grammars. Running JPF on this program generates all legal input scripts up to a prespecified size. Script generation can also be targeted to specific parts of the grammar of interest to the developers. These scripts are then fed to the SCL Executive. ICS's in-house coverage tools will be run to
The Automatic Galaxy Collision Software
Smith, Beverly J; Pfeiffer, Phillip; Perkins, Sam; Barkanic, Jason; Fritts, Steve; Southerland, Derek; Manchikalapudi, Dinikar; Baker, Matt; Luckey, John; Franklin, Coral; Moffett, Amanda; Struck, Curtis
2009-01-01
The key to understanding the physical processes that occur during galaxy interactions is dynamical modeling, and especially the detailed matching of numerical models to specific systems. To make modeling interacting galaxies more efficient, we have constructed the `Automatic Galaxy Collision' (AGC) code, which requires less human intervention in finding good matches to data. We present some preliminary results from this code for the well-studied system Arp 284 (NGC 7714/5), and address questions of uniqueness of solutions.
Automatic Generation of Technical Documentation
Reiter, Ehud; Mellish, Chris; Levine, John
1994-01-01
Natural-language generation (NLG) techniques can be used to automatically produce technical documentation from a domain knowledge base and linguistic and contextual models. We discuss this application of NLG technology from both a technical and a usefulness (costs and benefits) perspective. This discussion is based largely on our experiences with the IDAS documentation-generation project, and the reactions various interested people from industry have had to IDAS. We hope that this summary of ...
Annual review in automatic programming
Halpern, Mark I; Bolliet, Louis
2014-01-01
Computer Science and Technology and their Application is an eight-chapter book that first presents a tutorial on database organization. Subsequent chapters describe the general concepts of Simula 67 programming language; incremental compilation and conversational interpretation; dynamic syntax; the ALGOL 68. Other chapters discuss the general purpose conversational system for graphical programming and automatic theorem proving based on resolution. A survey of extensible programming language is also shown.
Automatically constructing the semantic web
Becerra, Victor Manuel; Brown, Matthew; Nasuto, Slawomir
2008-01-01
The storage and processing capacity realised by computing has lead to an explosion of data retention. We now reach the point of information overload and must begin to use computers to process more complex information. In particular, the proposition of the Semantic Web has given structure to this problem, but has yet realised practically. The largest of its problems is that of ontology construction; without a suitable automatic method most will have to be encoded by hand. In this paper we disc...
Approaches to Automatic Text Structuring
Erbs, Nicolai
2015-01-01
Structured text helps readers to better understand the content of documents. In classic newspaper texts or books, some structure already exists. In the Web 2.0, the amount of textual data, especially user-generated data, has increased dramatically. As a result, there exists a large amount of textual data which lacks structure, thus making it more difficult to understand. In this thesis, we will explore techniques for automatic text structuring to help readers to fulfill their information need...
The Automatic Measurement of Targets
DEFF Research Database (Denmark)
Höhle, Joachim
1997-01-01
The automatic measurement of targets is demonstrated by means of a theoretical example and by an interactive measuring program for real imagery from a réseau camera. The used strategy is a combination of two methods: the maximum correlation coefficient and the correlation in the subpixel range. F...... interactive software is also part of a computer-assisted learning program on digital photogrammetry....
Automatically-Programed Machine Tools
Purves, L.; Clerman, N.
1985-01-01
Software produces cutter location files for numerically-controlled machine tools. APT, acronym for Automatically Programed Tools, is among most widely used software systems for computerized machine tools. APT developed for explicit purpose of providing effective software system for programing NC machine tools. APT system includes specification of APT programing language and language processor, which executes APT statements and generates NC machine-tool motions specified by APT statements.
Automatic translation among spoken languages
Walter, Sharon M.; Costigan, Kelly
1994-02-01
The Machine Aided Voice Translation (MAVT) system was developed in response to the shortage of experienced military field interrogators with both foreign language proficiency and interrogation skills. Combining speech recognition, machine translation, and speech generation technologies, the MAVT accepts an interrogator's spoken English question and translates it into spoken Spanish. The spoken Spanish response of the potential informant can then be translated into spoken English. Potential military and civilian applications for automatic spoken language translation technology are discussed in this paper.
Julià Selvas, Núria; Ninyerola Casals, Miquel
2015-04-01
It has been implemented an automatic system to predict the fire risk in the Principality of Andorra, a small country located in the eastern Pyrenees mountain range, bordered by Catalonia and France, due to its location, his landscape is a set of a rugged mountains with an average elevation around 2000 meters. The system is based on the Fire Weather Index (FWI) that consists on different components, each one, measuring a different aspect of the fire danger calculated by the values of the weather variables at midday. CENMA (Centre d'Estudis de la Neu i de la Muntanya d'Andorra) has a network around 10 automatic meteorological stations, located in different places, peeks and valleys, that measure weather data like relative humidity, wind direction and speed, surface temperature, rainfall and snow cover every ten minutes; this data is sent daily and automatically to the system implemented that will be processed in the way to filter incorrect measurements and to homogenizer measurement units. Then this data is used to calculate all components of the FWI at midday and for the level of each station, creating a database with the values of the homogeneous measurements and the FWI components for each weather station. In order to extend and model this data to all Andorran territory and to obtain a continuous map, an interpolation method based on a multiple regression with spline residual interpolation has been implemented. This interpolation considerer the FWI data as well as other relevant predictors such as latitude, altitude, global solar radiation and sea distance. The obtained values (maps) are validated using a cross-validation leave-one-out method. The discrete and continuous maps are rendered in tiled raster maps and published in a web portal conform to Web Map Service (WMS) Open Geospatial Consortium (OGC) standard. Metadata and other reference maps (fuel maps, topographic maps, etc) are also available from this geoportal.
Conformations and Conformational Processes of Hexahydrobenzazocines by NMR and DFT Studies.
Musielak, Bogdan; Holak, Tad A; Rys, Barbara
2015-09-18
Conformational processes that occur in hexahydrobenzazocines have been studied with the (1)H and (13)C dynamic nuclear magnetic resonance (DNMR) spectroscopy. The coalescence effects are assigned to two different conformational processes: the ring-inversion of the ground-state conformations and the interconversion between two different conformers. The barriers for these processes are in the range of 42-52 and 42-43 kJ mol(-1), respectively. Molecular modeling on the density functional theory (DFT) level and the gauge invariant atomic orbitals (GIAO)-DFT calculations of isotropic shieldings and coupling constants for the set of low-energy conformations were compared with the experimental NMR data. The ground-state of all compounds in solution is the boat-chair (BC) conformation. The BC form adopts two different conformations because the nitrogen atom can be in the boat or chair parts of the BC structure. These two conformers are engaged in the interconversion process. PMID:26317238
Memory conformity: exploring misinformation effects when presented by another person.
Wright, D B; Self, G; Justice, C
2000-05-01
Two experiments demonstrate that post-event information, when delivered by another person, can affect people's memory reports. In the first experiment participants were shown several cars, and later, in pairs, given an 'old'/'new' recognition test on these cars plus several lures. There was a small but reliable effect of memory conformity. When the person was given misinformation this lowered accuracy, while presenting accurate information increased accuracy. In the second experiment participants, in pairs, viewed an identical crime except that half saw an accomplice with the thief and half did not. Initial memories were very accurate, but after discussing the crime with the other person in the pair (who saw a slightly different sequence), most pairs conformed. Confidence ratings strongly predicted which person in the pair persuaded the other. Parallels with eyewitness testimony in the Oklahoma bombing case and implications for police interviewing more generally are discussed. PMID:10832514
Conformational Slippage Determines Rotational Frequency in Five-Component Nanorotors.
Samanta, Soumen K; Rana, Anup; Schmittel, Michael
2016-02-01
Several five-component nanorotors ROT-3 that rotate at different rates were prepared by adding phenanthrolines of distinct lateral size as brake blocks to the four-component nanorotor ROT-2. The brake blocks interfere with the 180° rotor causing the rotational frequency to drop from 97 kHz to 5 kHz. The effect of the rotating brake blocks on the rotational frequency in ROT-3 is accurately predicted by a nanomechanical model called "conformational slippage". For quantification, the interaction of the brake blocks with the trajectory of the main rotator is gauged based on the number of interfering vs. non-interfering conformations as computed by PM6. PMID:26836349
Stable phantom-energy wormholes admitting conformal motions
Kuhfittig, Peter K F
2016-01-01
It has been argued that wormholes are as good a prediction of Einstein's theory as black holes but the theoretical construction requires a reverse strategy, specifying the desired geometric properties of the wormhole and leaving open the determination of the stress-energy tensor. We begin by confirming an earlier result by the author showing that a complete wormhole solution can be obtained by adopting the equation of state $p=\\omega\\rho$ and assuming that the wormhole admits a one-parameter group of conformal motions. The main purpose of this paper is to use the assumption of conformal symmetry to show that the wormhole is stable to linearized radial perturbations whenever $-1.5<\\omega <-1$.
Inflation and deformation of conformal field theory
Energy Technology Data Exchange (ETDEWEB)
Garriga, Jaume; Urakawa, Yuko, E-mail: jaume.garriga@ub.edu, E-mail: yurakawa@ffn.ub.es [Departament de Física Fonamental i Institut de Ciències del Cosmos, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona (Spain)
2013-07-01
It has recently been suggested that a strongly coupled phase of inflation may be described holographically in terms of a weakly coupled quantum field theory (QFT). Here, we explore the possibility that the wave function of an inflationary universe may be given by the partition function of a boundary QFT. We consider the case when the field theory is a small deformation of a conformal field theory (CFT), by the addition of a relevant operator O, and calculate the primordial spectrum predicted in the corresponding holographic inflation scenario. Using the Ward-Takahashi identity associated with Weyl rescalings, we derive a simple relation between correlators of the curvature perturbation ζ and correlators of the deformation operator O at the boundary. This is done without specifying the bulk theory of gravitation, so that the result would also apply to cases where the bulk dynamics is strongly coupled. We comment on the validity of the Suyama-Yamaguchi inequality, relating the bi-spectrum and tri-spectrum of the curvature perturbation.
Conformational heterogeneity of the calmodulin binding interface
Shukla, Diwakar; Peck, Ariana; Pande, Vijay S.
2016-04-01
Calmodulin (CaM) is a ubiquitous Ca2+ sensor and a crucial signalling hub in many pathways aberrantly activated in disease. However, the mechanistic basis of its ability to bind diverse signalling molecules including G-protein-coupled receptors, ion channels and kinases remains poorly understood. Here we harness the high resolution of molecular dynamics simulations and the analytical power of Markov state models to dissect the molecular underpinnings of CaM binding diversity. Our computational model indicates that in the absence of Ca2+, sub-states in the folded ensemble of CaM's C-terminal domain present chemically and sterically distinct topologies that may facilitate conformational selection. Furthermore, we find that local unfolding is off-pathway for the exchange process relevant for peptide binding, in contrast to prior hypotheses that unfolding might account for binding diversity. Finally, our model predicts a novel binding interface that is well-populated in the Ca2+-bound regime and, thus, a candidate for pharmacological intervention.
Social influence effects on automatic racial prejudice.
Lowery, B S; Hardin, C D; Sinclair, S
2001-11-01
Although most research on the control of automatic prejudice has focused on the efficacy of deliberate attempts to suppress or correct for stereotyping, the reported experiments tested the hypothesis that automatic racial prejudice is subject to common social influence. In experiments involving actual interethnic contact, both tacit and expressed social influence reduced the expression of automatic prejudice, as assessed by two different measures of automatic attitudes. Moreover, the automatic social tuning effect depended on participant ethnicity. European Americans (but not Asian Americans) exhibited less automatic prejudice in the presence of a Black experimenter than a White experimenter (Experiments 2 and 4), although both groups exhibited reduced automatic prejudice when instructed to avoid prejudice (Experiment 3). Results are consistent with shared reality theory, which postulates that social regulation is central to social cognition. PMID:11708561
Automatic hypermnesia and impaired recollection in schizophrenia.
Linscott, R J; Knight, R G
2001-10-01
Evidence from studies of nonmnemonic automatic cognitive processes provides reason to expect that schizophrenia is associated with exaggerated automatic memory (implicit memory), or automatic hypermnesia. Participants with schizophrenia (n = 22) and control participants (n = 26) were compared on word stem completion (WSC) and list discrimination (LD) tasks administered using the process dissociation procedure. Unadjusted, extended measurement model and dual-process signal-detection methods were used to estimate recollection and automatic memory indices. Schizophrenia was associated with automatic hypermnesia on the WSC task and impaired recollection on both tasks. Thought disorder was associated with even greater automatic hypermnesia. The absence of automatic hypermnesia on the LD task was interpreted with reference to the neuropsychological bases of context and content memory. PMID:11761047
The conformal spin and statistics theorem
Guido, D; Guido, Daniele; Longo, Roberto
1995-01-01
We prove the equality between the statistics phase and the conformal univalence for a superselection sector with finite index in Conformal Quantum Field Theory on S^1. A relevant point is the description of the PCT symmetry and the construction of the global conjugate charge.
DIMENSIONS FOR RANDOM SELF-CONFORMAL SETS
Institute of Scientific and Technical Information of China (English)
Liu Yanyan; Wu Jun
2003-01-01
A set is called regular if its Hausdorff dimension and upper box-counting dimension coincide.In this paper,we prove that the random self-conformal set is regular almost surely.Also we determine the dimensions for a class of random self-conformal sets.
Static validation of licence conformance policies
DEFF Research Database (Denmark)
Hansen, Rene Rydhof; Nielson, Flemming; Nielson, Hanne Riis; Probst, Christian W.
communication protocols using symmetric and asymmetric cryptography. In this work we show how to develop a Flow Logic for validating the conformance of client software with respect to a licence conformance policy. Our approach is sufficiently flexible that it extends to fully open systems that can admit new...
40 CFR 93.154 - Conformity analysis.
2010-07-01
... 40 Protection of Environment 20 2010-07-01 2010-07-01 false Conformity analysis. 93.154 Section 93... General Federal Actions to State or Federal Implementation Plans § 93.154 Conformity analysis. Any Federal... choose to adopt the analysis of another Federal agency or develop its own analysis in order to make...
40 CFR 51.854 - Conformity analysis.
2010-07-01
... 40 Protection of Environment 2 2010-07-01 2010-07-01 false Conformity analysis. 51.854 Section 51... Federal Actions to State or Federal Implementation Plans § 51.854 Conformity analysis. Link to an... for various aspects of a project, a Federal agency may choose to adopt the analysis of another...
New Conformal Invariants in Absolute Parallelism Geometry
Youssef, Nabil L.; Soleiman, A.; Taha, Ebtsam H.
2016-01-01
The aim of the present paper is to investigate conformal changes in absolute parallelism geometry. We find out some new conformal invariants in terms of the Weitzenb\\"ock connection and the Levi-Civita connection of an absolute parallelism space.
The conformal approach to asymptotic analysis
Nicolas, Jean-Philippe
2015-01-01
This essay was written as an extended version of a talk given at a conference in Strasbourg on "Riemann, Einstein and geometry", organized by Athanase Papadopoulos in September 2014. Its aim is to present Roger Penrose's approach to asymptotic analysis in general relativity, which is based on conformal geometric techniques, focusing on historical and recent aspects of two specialized topics~: conformal scattering and peeling.
Regulatory Conformance Checking: Logic and Logical Form
Dinesh, Nikhil
2010-01-01
We consider the problem of checking whether an organization conforms to a body of regulation. Conformance is studied in a runtime verification setting. The regulation is translated to a logic, from which we synthesize monitors. The monitors are evaluated as the state of an organization evolves over time, raising an alarm if a violation is…
Fixed point resolution in conformal field theory
J. Fuchs; Schellekens, A. N.; Schweigert, C.
1996-01-01
We summarize recent progress in the understanding of fixed point resolution for conformal field theories. Fixed points in both coset conformal field theories and non-diagonal modular invariants which describe simple current extensions of chiral algebras are investigated. A crucial role is played by the mathematical structures of twining characters and orbit Lie algebras.
Fusion rules in conformal field theory
International Nuclear Information System (INIS)
Several aspects of fusion rings and fusion rule algebras, and of their manifestations in two-dimensional (conformal) field theory, are described: diagonalization and the connection with modular invariance; the presentation in terms of quotients of polynomial rings; fusion graphs; various strategies that allow for a partial classification; and the role of the fusion rules in the conformal bootstrap programme. (orig.)
An extension theorem for conformal gauge singularities
Tod, Paul
2007-01-01
We analyse conformal gauge, or isotropic, singularities in cosmological models in general relativity. Using the calculus of tractors, we find conditions in terms of tractor curvature for a local extension of the conformal structure through a cosmological singularity and prove a local extension theorem.
Conformal non-relativistic hydrodynamics from gravity.
Rangamani, Mukund; Ross, Simon F.; Son, D.T.; Thompson, Ethan G.
2009-01-01
We show that the recently constructed holographic duals of conformal non-relativistic theories behave hydrodynamically at long distances, and construct the gravitational dual of fluid flows in a long-wavelength approximation. We compute the thermal conductivity of the holographic conformal non-relativistic fluid. The corresponding Prandtl number is equal to one.
Conformity to Peer Pressure in Preschool Children
Haun, Daniel B. M.; Tomasello, Michael
2011-01-01
Both adults and adolescents often conform their behavior and opinions to peer groups, even when they themselves know better. The current study investigated this phenomenon in 24 groups of 4 children between 4;2 and 4;9 years of age. Children often made their judgments conform to those of 3 peers, who had made obviously erroneous but unanimous…
Random loops and conformal field theory
Doyon, Benjamin
2014-01-01
This is a review of results obtained by the author concerning the relation between conformally invariant random loops and conformal field theory. This review also attempts to provide a physical context in which to interpret these results by making connections with aspects of the nucleation theory of phase transitions and with general properties of criticality.
Finite Conformal Quantum Gravity and Nonsingular Spacetimes
Modesto, Leonardo
2016-01-01
We explicitly prove that a class of finite quantum gravitational theories (in odd as well as in even dimension) is actually a range of anomaly-free conformally invariant theories in the spontaneously broken phase of the conformal Weyl symmetry. At classical level we show how the Weyl conformal invariance is likely able to tame the spacetime singularities that plague not only Einstein gravity, but also local and weakly non-local higher derivative theories. This latter statement is rigorously proved by a singularity theorem that applies to a large class of weakly non-local theories. Following the seminal paper by Narlikar and Kembhavi, we provide an explicit construction of singularity-free black hole exact solutions conformally equivalent to the Schwarzschild metric. Furthermore, we show that the FRW cosmological solutions and the Belinski, Khalatnikov, Lifshitz (BKL) spacetimes, which exactly solve the classical equations of motion, are conformally equivalent to regular spacetimes. Finally, we prove that the ...
10. Exploring the Conformal Constraint Equations
Butscher, Adrian
One method of studying the asymptotic structure of spacetime is to apply Penrose's conformal rescaling technique. In this setting, the rescaled Einstein equations for the metric and the conformal factor in the unphysical spacetime degenerate where the conformal factor vanishes, namely at the boundary representing null infinity. This problem can be avoided by means of a technique of H. Friedrich, which replaces the Einstein equations in the unphysical spacetime by an equivalent system of equations which is regular at the boundary. The initial value problem for these equations produces a system of constraint equations known as the conformal constraint equations. This work describes some of the properties of the conformal constraint equations and develops a perturbative method of generating solutions near Euclidean space under certain simplifying assumptions.
A geodesic model in conformal superspace
Gomes, Henrique de A
2016-01-01
In this paper, I look for the most general geometrodynamical symmetries compatible with spatial relational principles. I argue that they lead either to a completely static Universe, or one embodying spatial conformal diffeomorphisms. Demanding locality for an action compatible with these principles severely limits its form, both for the gravitational part as well as all matter couplings. The simplest and most natural choice for pure gravity has two propagating physical degrees of freedom (and no refoliation-invariance). The system has a geometric interpretation as a geodesic model in infinite dimensional conformal superspace. Conformal superspace is a stratified manifold, with different strata corresponding to different isometry groups. Choosing space to be (homeomorphic to) $S^3$, conformal superspace has a preferred stratum with maximal stabilizer group. This stratum consists of a single point -- corresponding to the conformal geometry of the round 3-sphere. This is the most homogeneous non-degenerate geome...
Conformal correlators of mixed-symmetry tensors
Costa, Miguel S
2015-01-01
We generalize the embedding formalism for conformal field theories to the case of general operators with mixed symmetry. The index-free notation encoding symmetric tensors as polynomials in an auxiliary polarization vector is extended to mixed-symmetry tensors by introducing a new commuting or anticommuting polarization vector for each row or column in the Young diagram that describes the index symmetries of the tensor. We determine the tensor structures that are allowed in n-point conformal correlation functions and give an algorithm for counting them in terms of tensor product coefficients. We show, with an example, how the new formalism can be used to compute conformal blocks of arbitrary external fields for the exchange of any conformal primary and its descendants. The matching between the number of tensor structures in conformal field theory correlators of operators in d dimensions and massive scattering amplitudes in d+1 dimensions is also seen to carry over to mixed-symmetry tensors.
Conformant Planning via Symbolic Model Checking
Cimatti, A; 10.1613/jair.774
2011-01-01
We tackle the problem of planning in nondeterministic domains, by presenting a new approach to conformant planning. Conformant planning is the problem of finding a sequence of actions that is guaranteed to achieve the goal despite the nondeterminism of the domain. Our approach is based on the representation of the planning domain as a finite state automaton. We use Symbolic Model Checking techniques, in particular Binary Decision Diagrams, to compactly represent and efficiently search the automaton. In this paper we make the following contributions. First, we present a general planning algorithm for conformant planning, which applies to fully nondeterministic domains, with uncertainty in the initial condition and in action effects. The algorithm is based on a breadth-first, backward search, and returns conformant plans of minimal length, if a solution to the planning problem exists, otherwise it terminates concluding that the problem admits no conformant solution. Second, we provide a symbolic representation ...
Unification of automatic target tracking and automatic target recognition
Schachter, Bruce J.
2014-06-01
The subject being addressed is how an automatic target tracker (ATT) and an automatic target recognizer (ATR) can be fused together so tightly and so well that their distinctiveness becomes lost in the merger. This has historically not been the case outside of biology and a few academic papers. The biological model of ATT∪ATR arises from dynamic patterns of activity distributed across many neural circuits and structures (including retina). The information that the brain receives from the eyes is "old news" at the time that it receives it. The eyes and brain forecast a tracked object's future position, rather than relying on received retinal position. Anticipation of the next moment - building up a consistent perception - is accomplished under difficult conditions: motion (eyes, head, body, scene background, target) and processing limitations (neural noise, delays, eye jitter, distractions). Not only does the human vision system surmount these problems, but it has innate mechanisms to exploit motion in support of target detection and classification. Biological vision doesn't normally operate on snapshots. Feature extraction, detection and recognition are spatiotemporal. When vision is viewed as a spatiotemporal process, target detection, recognition, tracking, event detection and activity recognition, do not seem as distinct as they are in current ATT and ATR designs. They appear as similar mechanism taking place at varying time scales. A framework is provided for unifying ATT and ATR.
Annual review in automatic programming
Goodman, Richard
2014-01-01
Annual Review in Automatic Programming, Volume 2 is a collection of papers that discusses the controversy about the suitability of COBOL as a common business oriented language, and the development of different common languages for scientific computation. A couple of papers describes the use of the Genie system in numerical calculation and analyzes Mercury autocode in terms of a phrase structure language, such as in the source language, target language, the order structure of ATLAS, and the meta-syntactical language of the assembly program. Other papers explain interference or an ""intermediate
Automatic Generation of Technical Documentation
Reiter, E R; Levine, J; Reiter, Ehud; Mellish, Chris; Levine, John
1994-01-01
Natural-language generation (NLG) techniques can be used to automatically produce technical documentation from a domain knowledge base and linguistic and contextual models. We discuss this application of NLG technology from both a technical and a usefulness (costs and benefits) perspective. This discussion is based largely on our experiences with the IDAS documentation-generation project, and the reactions various interested people from industry have had to IDAS. We hope that this summary of our experiences with IDAS and the lessons we have learned from it will be beneficial for other researchers who wish to build technical-documentation generation systems.
Unsupervised automatic music genre classification
Barreira, Luís Filipe Marques
2010-01-01
Trabalho apresentado no âmbito do Mestrado em Engenharia Informática, como requisito parcial para obtenção do grau de Mestre em Engenharia Informática In this study we explore automatic music genre recognition and classification of digital music. Music has always been a reflection of culture di erences and an influence in our society. Today’s digital content development triggered the massive use of digital music. Nowadays,digital music is manually labeled without following a universa...
Real time automatic scene classification
Israël, Menno; Broek, van den, Wouter; Putten, van, M.J.A.M.; Uyl, den, T.M.; Verbrugge, R.; Taatgen, N.; Schomaker, L.
2004-01-01
This work has been done as part of the EU VICAR (IST) project and the EU SCOFI project (IAP). The aim of the first project was to develop a real time video indexing classification annotation and retrieval system. For our systems, we have adapted the approach of Picard and Minka [3], who categorized elements of a scene automatically with so-called ’stuff’ categories (e.g., grass, sky, sand, stone). Campbell et al. [1] use similar concepts to describe certain parts of an image, which they named...
Annual review in automatic programming
Goodman, Richard
2014-01-01
Annual Review in Automatic Programming, Volume 4 is a collection of papers that deals with the GIER ALGOL compiler, a parameterized compiler based on mechanical linguistics, and the JOVIAL language. A couple of papers describes a commercial use of stacks, an IBM system, and what an ideal computer program support system should be. One paper reviews the system of compilation, the development of a more advanced language, programming techniques, machine independence, and program transfer to other machines. Another paper describes the ALGOL 60 system for the GIER machine including running ALGOL pro
Automatic transcription of polyphonic singing
Paščinski, Uroš
2015-01-01
In this work we focus on automatic transcription of polyphonic singing. In particular we do the multiple fundamental frequency (F0) estimation. From the terrain recordings a test set of Slovenian folk songs with polyphonic singing is extracted and manually transcribed. On the test set we try the general algorithm for multiple F0 detection. An interactive visualization of the main parts of the algorithm is made to analyse how it works and try to detect possible issues. As the data set is ne...
Automatic analysis of multiparty meetings
Indian Academy of Sciences (India)
Steve Renals
2011-10-01
This paper is about the recognition and interpretation of multiparty meetings captured as audio, video and other signals. This is a challenging task since the meetings consist of spontaneous and conversational interactions between a number of participants: it is a multimodal, multiparty, multistream problem. We discuss the capture and annotation of the Augmented Multiparty Interaction (AMI) meeting corpus, the development of a meeting speech recognition system, and systems for the automatic segmentation, summarization and social processing of meetings, together with some example applications based on these systems.
Coordinated hybrid automatic repeat request
Makki, Behrooz
2014-11-01
We develop a coordinated hybrid automatic repeat request (HARQ) approach. With the proposed scheme, if a user message is correctly decoded in the first HARQ rounds, its spectrum is allocated to other users, to improve the network outage probability and the users\\' fairness. The results, which are obtained for single- and multiple-antenna setups, demonstrate the efficiency of the proposed approach in different conditions. For instance, with a maximum of M retransmissions and single transmit/receive antennas, the diversity gain of a user increases from M to (J+1)(M-1)+1 where J is the number of users helping that user.
C-metric solution for conformal gravity with a conformally coupled scalar field
Meng, Kun
2016-01-01
The C-metric solution of conformal gravity with a conformally coupled scalar field is presented. The solution belongs to the class of Petrov type D spacetimes and is conformal to the standard AdS C-metric appeared in vacuum Einstein gravity. For all parameter ranges, we identify some of the physically interesting static regions and the corresponding coordinate ranges. The solution may contain a black hole event horizon, an acceleration horizon, either of which may be cut by the conformal infinity or be hidden behind the conformal infinity. Since the model is conformally invariant, we also discussed the possible effects of the conformal gauge choices on the structure of the spacetime.
Mattonen, Sarah A.; Palma, David A.; Haasbeek, Cornelis J. A.; Senan, Suresh; Ward, Aaron D.
2014-03-01
Benign radiation-induced lung injury is a common finding following stereotactic ablative radiotherapy (SABR) for lung cancer, and is often difficult to differentiate from a recurring tumour due to the ablative doses and highly conformal treatment with SABR. Current approaches to treatment response assessment have shown limited ability to predict recurrence within 6 months of treatment. The purpose of our study was to evaluate the accuracy of second order texture statistics for prediction of eventual recurrence based on computed tomography (CT) images acquired within 6 months of treatment, and compare with the performance of first order appearance and lesion size measures. Consolidative and ground-glass opacity (GGO) regions were manually delineated on post-SABR CT images. Automatic consolidation expansion was also investigated to act as a surrogate for GGO position. The top features for prediction of recurrence were all texture features within the GGO and included energy, entropy, correlation, inertia, and first order texture (standard deviation of density). These predicted recurrence with 2-fold cross validation (CV) accuracies of 70-77% at 2- 5 months post-SABR, with energy, entropy, and first order texture having leave-one-out CV accuracies greater than 80%. Our results also suggest that automatic expansion of the consolidation region could eliminate the need for manual delineation, and produced reproducible results when compared to manually delineated GGO. If validated on a larger data set, this could lead to a clinically useful computer-aided diagnosis system for prediction of recurrence within 6 months of SABR and allow for early salvage therapy for patients with recurrence.
International Nuclear Information System (INIS)
The authors report the definition of relevant quantitative indicators for the characterization of the delineation of organs at risk in the ENT area. Based on the analysis of more than hundred medical files of patients treated by conformational irradiation for an upper aero-digestive tract cancer, the authors aim at developing a delineation standard by descriptive analysis of these indicators, and then at developing of automatic delineation error detection tool. Short communication
Beyond Halo Mass: Galactic Conformity as a Smoking Gun of Central Galaxy Assembly Bias
Hearin, Andrew P; Bosch, Frank C van den
2014-01-01
Quenched central galaxies tend to reside in a preferentially quenched large-scale environment, a phenomenon that has been dubbed galactic conformity. Remarkably, this tendency persists out to scales far larger than the virial radius of the halo hosting the central. Therefore, conformity manifestly violates the widely adopted assumption that the dark matter halo mass Mvir exclusively governs galaxy occupation statistics. This paper is the first in a series studying the implications of the observed conformity signal for the galaxy-dark matter connection. We show that recent measurements of conformity on scales R ~1-5 Mpc imply that central galaxy quenching statistics cannot be correctly predicted with the knowledge of Mvir alone. We also demonstrate that ejected (or `backsplash') satellites cannot give rise to the signal. We then invoke the age matching model, which is predicated on the co-evolution of galaxies and halos. We find that this model produces a strong signal, and that central galaxies are solely res...
Understanding modern magnets through conformal mapping
International Nuclear Information System (INIS)
I want to show with the help of a number of examples that conformal mapping is a unique and enormously powerful tool for thinking about, and solving, problems. Usually one has to write down only a few equations, and sometimes none at all exclamation point When I started getting involved in work for which conformal mapping seemed to be a powerful tool, I did not think that I would ever be able to use that technique successfully because it seemed to require a nearly encyclopedic memory, an impression that was strengthened when I saw K. Kober's Dictionary of Conformal Representations. This attitude changed when I started to realize that beyond the basics of the theory of a function of a complex variable, I needed to know only about a handful of conformal maps and procedures. Consequently, my second goal for this talk is to show that in most cases conformal mapping functions can be obtained by formulating the underlying physics appropriately. This means particularly that encyclopedic knowledge of conformal maps is not necessary for successful use of conformal mapping techniques. To demonstrate these facts I have chosen examples from an area of physics/engineering in which I am active, namely accelerator physics. In order to do that successfully I start with a brief introduction into high energy charged particle storage ring technology, even though not all examples used in this paper to elucidate my points come directly from this particular field of accelerator technology
Thermal adaptation of conformational dynamics in ribonuclease H.
Directory of Open Access Journals (Sweden)
Kate A Stafford
Full Text Available The relationship between inherent internal conformational processes and enzymatic activity or thermodynamic stability of proteins has proven difficult to characterize. The study of homologous proteins with differing thermostabilities offers an especially useful approach for understanding the functional aspects of conformational dynamics. In particular, ribonuclease HI (RNase H, an 18 kD globular protein that hydrolyzes the RNA strand of RNA:DNA hybrid substrates, has been extensively studied by NMR spectroscopy to characterize the differences in dynamics between homologs from the mesophilic organism E. coli and the thermophilic organism T. thermophilus. Herein, molecular dynamics simulations are reported for five homologous RNase H proteins of varying thermostabilities and enzymatic activities from organisms of markedly different preferred growth temperatures. For the E. coli and T. thermophilus proteins, strong agreement is obtained between simulated and experimental values for NMR order parameters and for dynamically averaged chemical shifts, suggesting that these simulations can be a productive platform for predicting the effects of individual amino acid residues on dynamic behavior. Analyses of the simulations reveal that a single residue differentiates between two different and otherwise conserved dynamic processes in a region of the protein known to form part of the substrate-binding interface. Additional key residues within these two categories are identified through the temperature-dependence of these conformational processes.
The unitary conformal field theory behind 2D Asymptotic Safety
Nink, Andreas; Reuter, Martin
2016-02-01
Being interested in the compatibility of Asymptotic Safety with Hilbert space positivity (unitarity), we consider a local truncation of the functional RG flow which describes quantum gravity in d > 2 dimensions and construct its limit of exactly two dimensions. We find that in this limit the flow displays a nontrivial fixed point whose effective average action is a non-local functional of the metric. Its pure gravity sector is shown to correspond to a unitary conformal field theory with positive central charge c = 25. Representing the fixed point CFT by a Liouville theory in the conformal gauge, we investigate its general properties and their implications for the Asymptotic Safety program. In particular, we discuss its field parametrization dependence and argue that there might exist more than one universality class of metric gravity theories in two dimensions. Furthermore, studying the gravitational dressing in 2D asymptotically safe gravity coupled to conformal matter we uncover a mechanism which leads to a complete quenching of the a priori expected Knizhnik-Polyakov-Zamolodchikov (KPZ) scaling. A possible connection of this prediction to Monte Carlo results obtained in the discrete approach to 2D quantum gravity based upon causal dynamical triangulations is mentioned. Similarities of the fixed point theory to, and differences from, non-critical string theory are also described. On the technical side, we provide a detailed analysis of an intriguing connection between the Einstein-Hilbert action in d > 2 dimensions and Polyakov's induced gravity action in two dimensions.
Integral Equation Theory for the Conformation of Polyelectrolytes
Shew, C.-Y.; Yethiraj, A.
1996-03-01
The equilibrium conformation properties of polyelectrolyes are explored using the integral equation theory. The polymer molecules are modeled as freely-jointed beads that interact via a hard sphere plus screened Coulomb potential. To obtain the intramolecuar correlation function ( and hence the chain conformations) the many chain system is replaced by a single chain whose beads interact via the bare interaction plus a solvent-induced potential, which approximately accounts for the presence of the other molecules. Since this solvent induced potential is a functional of the intramolecular correlations it is obtained iteratively in a self-consistent fashion. The intramolecular correlation functions for a given solvation potential are obtained via Monte Carlo simulation of a single chain. A thread model of the polymer molecules is also investigated, in which case the single chain conformations are obtained using a variational method. The predictions of the theory for these two models are similar. For single chains ~ N^2 ( is the mean square end-to-end distance and N is the degree of polymerization) in salt free solutions, and ~ N^1.2 in high salt solutions. At high polymer concentration ~ N. The theory provides a means of interpolating between these limiting cases. An interesting feature is that there is a very sharp drop in polymer size at very low concentrations which happens because the overlap threshold concentration in polyelectrolytes solutions is very small.
Automatic generation of tourist brochures
Birsak, Michael
2014-05-01
We present a novel framework for the automatic generation of tourist brochures that include routing instructions and additional information presented in the form of so-called detail lenses. The first contribution of this paper is the automatic creation of layouts for the brochures. Our approach is based on the minimization of an energy function that combines multiple goals: positioning of the lenses as close as possible to the corresponding region shown in an overview map, keeping the number of lenses low, and an efficient numbering of the lenses. The second contribution is a route-aware simplification of the graph of streets used for traveling between the points of interest (POIs). This is done by reducing the graph consisting of all shortest paths through the minimization of an energy function. The output is a subset of street segments that enable traveling between all the POIs without considerable detours, while at the same time guaranteeing a clutter-free visualization. © 2014 The Author(s) Computer Graphics Forum © 2014 The Eurographics Association and John Wiley & Sons Ltd. Published by John Wiley & Sons Ltd.
Automatic scanning for nuclear emulsion
International Nuclear Information System (INIS)
Automatic scanning systems have been recently developed for application in neutrino experiments exploiting nuclear emulsion detectors of particle tracks. These systems speed up substantially the analysis of events in emulsion, allowing the realisation of experiments with unprecedented statistics. The pioneering work on automatic scanning has been done by the University of Nagoya (Japan). The so called new track selector has a very good reproducibility in position (∼1 μm) and angle (∼3 mrad), with the possibility to reconstruct, in about 3 s, all the tracks in a view of 150x150 μm2 and 1 mm of thickness. A new system (ultratrack selector), with speed higher by one order of magnitude, has started to be in operation. R and D programs are going on in Nagoya and in other laboratories for new systems. The scanning speed in nuclear emulsion be further increased by an order of magnitude. The recent progress in the technology of digital signal processing and of image acquisition systems (CCDs and fast frame grabbers) allows the realisation of systems with high performance. New interesting applications of the technique in other fields (e.g. in biophysics) have recently been envisaged
International Nuclear Information System (INIS)
Automatic handling device for the steam relief valves (SRV's) is developed in order to achieve a decrease in exposure of workers, increase in availability factor, improvement in reliability, improvement in safety of operation, and labor saving. A survey is made during a periodical inspection to examine the actual SVR handling operation. An SRV automatic handling device consists of four components: conveyor, armed conveyor, lifting machine, and control/monitoring system. The conveyor is so designed that the existing I-rail installed in the containment vessel can be used without any modification. This is employed for conveying an SRV along the rail. The armed conveyor, designed for a box rail, is used for an SRV installed away from the rail. By using the lifting machine, an SRV installed away from the I-rail is brought to a spot just below the rail so that the SRV can be transferred by the conveyor. The control/monitoring system consists of a control computer, operation panel, TV monitor and annunciator. The SRV handling device is operated by remote control from a control room. A trial equipment is constructed and performance/function testing is carried out using actual SRV's. As a result, is it shown that the SRV handling device requires only two operators to serve satisfactorily. The required time for removal and replacement of one SRV is about 10 minutes. (Nogami, K.)
Automatic validation of numerical solutions
DEFF Research Database (Denmark)
Stauning, Ole
1997-01-01
This thesis is concerned with ``Automatic Validation of Numerical Solutions''. The basic theory of interval analysis and self-validating methods is introduced. The mean value enclosure is applied to discrete mappings for obtaining narrow enclosures of the iterates when applying these mappings wit...... the mean value enclosure of an integral operator and uses interval Bernstein polynomials for enclosing the solution. Two numerical examples are given, using two orders of approximation and using different numbers of discretization points.......This thesis is concerned with ``Automatic Validation of Numerical Solutions''. The basic theory of interval analysis and self-validating methods is introduced. The mean value enclosure is applied to discrete mappings for obtaining narrow enclosures of the iterates when applying these mappings with...... intervals as initial values. A modification of the mean value enclosure of discrete mappings is considered, namely the extended mean value enclosure which in most cases leads to even better enclosures. These methods have previously been described in connection with discretizing solutions of ordinary...
Visualisation of xanthan conformation by atomic force microscopy.
Moffat, Jonathan; Morris, Victor J; Al-Assaf, Saphwan; Gunning, A Patrick
2016-09-01
Direct visual evidence obtained by atomic force microscopy demonstrates that when xanthan is adsorbed from aqueous solution onto the heterogeneously charged substrate mica, its helical conformation is distorted. Following adsorption it requires annealing for several hours to restore its ordered helical state. Once the helix state reforms, the AFM images obtained showed clear resolution of the periodicity with a value of 4.7nm consistent with the previously predicted models. In addition, the images also reveal evidence that the helix is formed by a double strand, a clarification of an ambiguity of the xanthan ultrastructure that has been outstanding for many years. PMID:27185152
Fitting of hadron spectrum in 5-dimensional conformal relativity
International Nuclear Information System (INIS)
There is no well known kinematic theory of masses which can be used to compute masses of observed particles. The theory of mass of Conformal Relativity in 5-dimensions does promise to fulfill this need. Here we apply its theoretical results to hadrons and successfully fit their masses with a universal length l (the size of the 5th dimension) of 1.36 Fermi. Our fitting scheme shows a trend from which we can predict the observed masses. We conjecture about reasons our fitting distinguishes between hadrons in terms of their quark composition. The value of l suggests physical interpretations and possible means of detection. (author)
Fitting of hadron spectrum in 5 dimensional conformal relativity
International Nuclear Information System (INIS)
There is not a well-known kinematic theory of masses which can be used to compute masses of observed particles. The theory of mass of conformal relativity in 5 dimensions does promise to fulfil this need. Here its theoretical results are applied to hadrons and successfully fit their masses with a universal length l (the size of the 5th dimension) of 1.36 fm. This fitting scheme shows a trend from which we can predict the observed masses. It is conjectured about reasons our fitting distinguishes between hadrons in terms of their quark composition. The value of l suggests physical interpretations and possible means of detection
Using Chemicals to Optimize Conformance Control in Fractured Reservoirs
Energy Technology Data Exchange (ETDEWEB)
Seright, Randall S.; Liang, Jenn-Tai; Schrader, Richard; Hagstrom II, John; Wang, Ying; Kumar, Ananad; Wavrik, Kathryn
2001-10-29
This report describes work performed during the third and final year of the project, Using Chemicals to Optimize Conformance Control in Fractured Reservoirs. This research project had three objectives. The first objective was to develop a capability to predict and optimize the ability of gels to reduce permeability to water more than that to oil or gas. The second objective was to develop procedures for optimizing blocking agent placement in wells where hydraulic fractures cause channeling problems. The third objective was to develop procedures to optimize blocking agent placement in naturally fractured reservoirs.
MODELING THE CHAIN CONFORMATION OF POLYMER MELTS IN CONTRACTION FLOW
Institute of Scientific and Technical Information of China (English)
Qing Shen; Jian-feng Hu; Qing-feng Gu
2003-01-01
A constitutive model of quasi-Newtonian fluid based on the type of flow is used in abrupt planar contraction flow.The numerical results from finite element analysis are consistent with experimental data for stress patterns and velocity profiles in the flow field. The chain conformations of polymer melts are then investigated in such a planar contraction by using the phenomenological model with internal parameters proposed by the author. That is, the shape and orientation of polymer chain coils are predicted and discussed in different flow regions of the contraction flow field that possess simple shear flow, extensional flow, vortical flow, and mixed flow respectively.
Devlin, F J; Stephens, P J; Osterle, C; Wiberg, K B; Cheeseman, J R; Frisch, M J
2002-11-15
The chiral monosubstituted derivatives of spiropentane, spiropentylcarboxylic acid methyl ester, 1, and spiropentyl acetate, 2, have been synthesized in optically active form. Configurational and conformational analysis of 1 and 2 has been carried out using infrared (IR) and vibrational circular dichroism (VCD) spectroscopies. Analysis of the experimental IR and VCD spectra has been carried out using ab initio density functional theory (DFT). For both 1 and 2, DFT predicts two populated conformations. Comparison to experiment of the conformationally averaged IR and VCD spectra of 1 and 2, predicted using DFT, provides unequivocal evidence of the predicted conformations and yields the absolute configurations R(-)/S(+) for 1 and R(+)/S(-) for 2. These absolute configurations are consistent with the R(-)/S(+) absolute configuration of spiropentylcarboxylic acid, assigned previously via X-ray crystallography of its alpha-phenylethylammonium salt. PMID:12423137
Automated Detection of Conformational Epitopes Using Phage Display Peptide Sequences
Directory of Open Access Journals (Sweden)
Surendra S Negi
2009-01-01
Full Text Available Background: Precise determination of conformational epitopes of neutralizing antibodies represents a key step in the rational design of novel vaccines. A powerful experimental method to gain insights on the physical chemical nature of conformational epitopes is the selection of linear peptides that bind with high affinities to a monoclonal antibody of interest by phage display technology. However, the structural characterization of conformational epitopes from these mimotopes is not straightforward, and in the past the interpretation of peptide sequences from phage display experiments focused on linear sequence analysis to find a consensus sequence or common sequence motifs.Results: We present a fully automated search method, EpiSearch that predicts the possible location of conformational epitopes on the surface of an antigen. The algorithm uses peptide sequences from phage display experiments as input, and ranks all surface exposed patches according to the frequency distribution of similar residues in the peptides and in the patch. We have tested the performance of the EpiSearch algorithm for six experimental data sets of phage display experiments, the human epidermal growth factor receptor-2 (HER-2/neu, the antibody mAb Bo2C11 targeting the C2 domain of FVIII, antibodies mAb 17b and mAb b12 of the HIV envelope protein gp120, mAb 13b5 targeting HIV-1 capsid protein and 80R of the SARS coronavirus spike protein. In all these examples the conformational epitopes as determined by the X-ray crystal structures of the antibody-antigen complexes, were found within the highest scoring patches of EpiSearch, covering in most cases more than 50% residues of experimental observed conformational epitopes. Input options of the program include mapping of a single peptide or a set of peptides on the antigen structure, and the results of the calculation can be visualized on our interactive web server.Availability: Users can access the EpiSearch from our web
Automatic Differentiation of Algorithms for Machine Learning
Baydin, Atilim Gunes; Pearlmutter, Barak A.
2014-01-01
Automatic differentiation --- the mechanical transformation of numeric computer programs to calculate derivatives efficiently and accurately --- dates to the origin of the computer age. Reverse mode automatic differentiation both antedates and generalizes the method of backwards propagation of errors used in machine learning. Despite this, practitioners in a variety of fields, including machine learning, have been little influenced by automatic differentiation, and make scant use of available...
Automatic Speech Segmentation Based on HMM
M. Kroul
2007-01-01
This contribution deals with the problem of automatic phoneme segmentation using HMMs. Automatization of speech segmentation task is important for applications, where large amount of data is needed to process, so manual segmentation is out of the question. In this paper we focus on automatic segmentation of recordings, which will be used for triphone synthesis unit database creation. For speech synthesis, the speech unit quality is a crucial aspect, so the maximal accuracy in segmentation is ...
Automatic Control of Water Pumping Stations
Institute of Scientific and Technical Information of China (English)
Muhannad Alrheeh; JIANG Zhengfeng
2006-01-01
Automatic Control of pumps is an interesting proposal to operate water pumping stations among many kinds of water pumping stations according to their functions.In this paper, our pumping station is being used for water supply system. This paper is to introduce the idea of pump controller and the important factors that must be considering when we want to design automatic control system of water pumping stations. Then the automatic control circuit with the function of all components will be introduced.
Automatic inference of specifications using matching logic
Alpuente Frasnedo, María; Feliú Gabaldón, Marco Antonio; Villanueva García, Alicia
2013-01-01
Formal specifications can be used for various software engineering activities ranging from finding errors to documenting software and automatic test-case generation. Automatically discovering specifications for heap-manipulating programs is a challenging task. In this paper, we propose a technique for automatically inferring formal specifications from C code which is based on the symbolic execution and automated reasoning tandem "MATCHING LOGIC /K framework". We implemented our technique for ...
An automatic visual analysis system for tennis
Connaghan, Damien; Moran, Kieran; O''Connor, Noel E.
2013-01-01
This article presents a novel video analysis system for coaching tennis players of all levels, which uses computer vision algorithms to automatically edit and index tennis videos into meaningful annotations. Existing tennis coaching software lacks the ability to automatically index a tennis match into key events, and therefore, a coach who uses existing software is burdened with time-consuming manual video editing. This work aims to explore the effectiveness of a system to automatically de...
Conformal Gravity: Dark Matter and Dark Energy
Nesbet, Robert K
2012-01-01
This short review examines recent progress in understanding dark matter, dark energy, and galactic halos using theory that departs minimally from standard particle physics and cosmology. Postulated strict conformal symmetry (local Weyl scaling covariance) for all elementary massless fields retains standard theory for fermions and gauge bosons but modifies Einstein-Hilbert general relativity and the Higgs scalar field model, introducing no new physical fields. Subgalactic phenomenology is retained. Without invoking dark matter, conformal gravity and a conformal Higgs model fit empirical data on galactic rotational velocities, galactic halos, and Hubble expansion including dark energy.
The Conformal Window from the Worldline Formalism
Armoni, Adi
2009-01-01
We use the worldline formalism to derive a universal relation for the lower boundary of the conformal window in non-supersymmetric QCD-like theories. The derivation relies on the convergence of the expansion of the fermionic determinant in terms of Wilson loops. The expansion shares a similarity with the lattice strong coupling expansion and the genus expansion in string theory. Our result relates the lower boundary of the conformal window in theories with different representations and different gauge groups. Finally, we use SQCD to estimate the boundary of the conformal window in QCD-like theories and compare it with other approaches.
Conformal linear gravity in de Sitter space
Fatemi, S; Takook, M V; Tanhayi, M R
2009-01-01
It has been shown that the theory of linear conformal quantum gravity must include a tensor field of rank 3 and mixed symmetry [1]. In this paper, we obtain the field equation of such field, with conformal degree zero in de Sitter space. Then, in order to relate this rank-3 tensor field with the symmetric tensor field of rank-2, $\\K_{\\alpha\\beta}$, we will define homomorphisms between them. Our main result is that if one insists $\\K_{\\alpha\\beta}$ transform according to the unitary irreducible representations of de Sitter and conformal groups it must satisfy a filed equation of order 6.
Tabu Search Based Strategies for Conformational Search
Stepanenko, Svetlana; Engels, Bernd
2009-09-01
This paper presents an application of the new nonlinear global optimization routine gradient only tabu search (GOTS) to conformational search problems. It is based on the tabu search strategy which tries to determine the global minimum of a function by the steepest descent-modest ascent strategy. The refinement of ranking procedure of the original GOTS method and the exploitation of simulated annealing elements are described, and the modifications of the GOTS algorithm necessary to adopt it to conformation searches are explained. The utility of the GOTS for conformational search problems is tested using various examples.
Scalar scattering via conformal higher spin exchange
Joung, Euihun; Nakach, Simon; Tseytlin, Arkady A.
2016-02-01
Theories containing infinite number of higher spin fields require a particular definition of summation over spins consistent with their underlying symmetries. We consider a model of massless scalars interacting (via bilinear conserved currents) with conformal higher spin fields in flat space. We compute the tree-level four-scalar scattering amplitude using a natural prescription for summation over an infinite set of conformal higher spin exchanges and find that it vanishes. Independently, we show that the vanishing of the scalar scattering amplitude is, in fact, implied by the global conformal higher spin symmetry of this model. We also discuss one-loop corrections to the four-scalar scattering amplitude.
Structure, Intent and Conformance Monitoring in ATC
Reynolds, Tom G.; Histon, Jonathan M.; Davison, Hayley J.; Hansman, R. John
2004-01-01
Infield studies of current Air Traffic Control operations it is found that controllers rely on underlying airspace structure to reduce the complexity of the planning and conformance monitoring tasks. The structure appears to influence the controller's working mental model through abstractions that reduce the apparent cognitive complexity. These structure-based abstractions are useful for the controller's key tasks of planning, implementing, monitoring, and evaluating tactical situations. In addition, the structure-based abstractions appear to be important in the maintenance of Situation Awareness. The process of conformance monitoring is analyzed in more detail and an approach to conformance monitoring which utilizes both the structure-based abstractions and intent is presented.
The decomposition of global conformal invariants
Alexakis, Spyros
2012-01-01
This book addresses a basic question in differential geometry that was first considered by physicists Stanley Deser and Adam Schwimmer in 1993 in their study of conformal anomalies. The question concerns conformally invariant functionals on the space of Riemannian metrics over a given manifold. These functionals act on a metric by first constructing a Riemannian scalar out of it, and then integrating this scalar over the manifold. Suppose this integral remains invariant under conformal re-scalings of the underlying metric. What information can one then deduce about the Riemannian scalar? Dese
Conformal symmetry of JIMWLK evolution at NLO
International Nuclear Information System (INIS)
We construct the Next to Leading Order JIMWLK Hamiltonian for high energy evolution in N=4 SUSY theory, and show that it possesses conformal invariance, even though it is derived using sharp cutoff on rapidity variable. The conformal transformation properties of Wilson lines are not quite the naive ones, but at NLO acquire an additional anomalous piece. We construct explicitly the inversion symmetry generator. We also show how to construct for every operator O, including the Hamiltonian itself, its “conformal extension' O, such that it transforms under the inversion in the naive way
Conformal field theory on the plane
Ribault, Sylvain
2014-01-01
We provide an introduction to conformal field theory on the plane in the conformal bootstrap approach. We introduce the main ideas of the bootstrap approach to quantum field theory, and how they apply to two-dimensional theories with local conformal symmetry. We describe the mathematical structures which appear in such theories, from the Virasoro algebra and its representations, to the BPZ equations and their solutions. As examples, we study a number of models: Liouville theory, (generalized) minimal models, free bosonic theories, the $H_3^+$ model, and the $SU_2$ and $\\widetilde{SL}_2(\\mathbb{R})$ WZW models.
Singular vectors in logarithmic conformal field theories
International Nuclear Information System (INIS)
Null vectors are generalized to the case of indecomposable representations which are one of the main features of logarithmic conformal field theories. This is done by developing a compact formalism with the particular advantage that the stress energy tensor acting on Jordan cells of primary fields and their logarithmic partners can still be represented in form of linear differential operators. Since the existence of singular vectors is subject to much stronger constraints than in regular conformal field theory, they also provide a powerful tool for the classification of logarithmic conformal field theories. (orig.)
Some representations of planar Galilean conformal algebra
Aizawa, N
2013-01-01
Representation theory of an infinite dimensional Galilean conformal algebra introduced by Martelli and Tachikawa is developed. We focus on the algebra defined in (2+1) dimensional spacetime and consider central extension. It is then shown that the Verma modules are irreducible for non-vanishing highest weights. This is done by explicit computation of Kac determinant. We also present coadjoint representations of the Galilean conformal algebra and its Lie group. As an application of them, a coadjoint orbit of the Galilean conformal group is given in a simple case.
Conformal Gravity: Dark Matter and Dark Energy
Directory of Open Access Journals (Sweden)
Robert K. Nesbet
2013-01-01
Full Text Available This short review examines recent progress in understanding dark matter, dark energy, and galactic halos using theory that departs minimally from standard particle physics and cosmology. Strict conformal symmetry (local Weyl scaling covariance, postulated for all elementary massless fields, retains standard fermion and gauge boson theory but modifies Einstein–Hilbert general relativity and the Higgs scalar field model, with no new physical fields. Subgalactic phenomenology is retained. Without invoking dark matter, conformal gravity and a conformal Higgs model fit empirical data on galactic rotational velocities, galactic halos, and Hubble expansion including dark energy.
Conformity and Dissonance in Generalized Voter Models
Page, Scott E.; Sander, Leonard M.; Schneider-Mizell, Casey M.
2007-09-01
We generalize the voter model to include social forces that produce conformity among voters and avoidance of cognitive dissonance of opinions within a voter. The time for both conformity and consistency (which we call the exit time) is, in general, much longer than for either process alone. We show that our generalized model can be applied quite widely: it is a form of Wright's island model of population genetics, and is related to problems in the physical sciences. We give scaling arguments, numerical simulations, and analytic estimates for the exit time for a range of relative strengths in the tendency to conform and to avoid dissonance.
Conformational and Vibrational Studies of Triclosan
Özişik, Haci; Bayari, S. Haman; Saǧlam, Semran
2010-01-01
The conformational equilibrium of triclosan (5-chloro-2-(2, 4-dichlorophenoxy) phenol) have been calculated using density functional theory (DFTe/B3LYP/6-311++G(d, p)) method. Four different geometries were found to correspond to energy minimum conformations. The IR spectrum of triclosan was measured in the 4000-400 cm-1 region. We calculated the harmonic frequencies and intensities of the most stable conformers in order to assist in the assignment of the vibrational bands in the experimental spectrum. The fundamental vibrational modes were characterized depending on their total energy distribution (TED%) using scaled quantum mechanical (SQM) force field method.
Alcohol-related Cues Promote Automatic Racial Bias.
Stepanova, Elena V; Bartholow, Bruce D; Saults, J Scott; Friedman, Ronald S
2012-07-01
Previous research has shown that alcohol consumption can increase the expression of race bias by impairing control-related processes. The current study tested whether simple exposure to alcohol-related images can also increase bias, but via a different mechanism. Participants viewed magazine ads for either alcoholic or nonalcoholic beverages prior to completing Payne's (2001) Weapons Identification Task (WIT). As predicted, participants primed with alcohol ads exhibited greater race bias in the WIT than participants primed with neutral beverages. Process dissociation analyses indicated that these effects were due to automatic (relative to controlled) processes having a larger influence on behavior among alcohol-primed relative to neutral-primed participants. Structural equation modeling further showed that the alcohol-priming effect was mediated by increases in the influence of automatic associations on behavior. These data suggest an additional pathway by which alcohol can potentially harm inter-racial interactions, even when no beverage is consumed. PMID:22798699
Automatic Emotional State Detection using Facial Expression Dynamic in Videos
Directory of Open Access Journals (Sweden)
Hongying Meng
2014-11-01
Full Text Available In this paper, an automatic emotion detection system is built for a computer or machine to detect the emotional state from facial expressions in human computer communication. Firstly, dynamic motion features are extracted from facial expression videos and then advanced machine learning methods for classification and regression are used to predict the emotional states. The system is evaluated on two publicly available datasets, i.e. GEMEP_FERA and AVEC2013, and satisfied performances are achieved in comparison with the baseline results provided. With this emotional state detection capability, a machine can read the facial expression of its user automatically. This technique can be integrated into applications such as smart robots, interactive games and smart surveillance systems.
Solid state conformational classification of eight-membered rings
DEFF Research Database (Denmark)
Pérez, J.; García, L.; Kessler, M.;
2005-01-01
A statistical classification of the solid state conformation in the title complexes using data retrieved from the Cambridge Structural Database (CSD) has been made. Phosphate and phosphinate complexes show a chair conformation preferably. In phosphonate complexes, the most frequent conformations...
Boretta, M.; Cantù, L.; Corti, M.; del Favero, E.
1997-02-01
An accurate X-ray scattering study of the self-association properties in water of the ganglioside GM1, a biological amphiphile similar to phospholipids but with an oligosaccharide headgroup, is described. The phase diagram displays a large cubic region, for concentrations between 31% and 55% by weight, enclosed by isotropic micellar and lamellar phases. The peculiar feature of the GM1 molecule to present a conformational bistability, recently observed in ganglioside micelles, can be well recognized in the cubic phase region, suggesting that GM1-water behaves like a pseudoternary system, with an additional degree of freedom, automatically readjusting the mole fraction of the two conformers in order to optimize the molecular packing.
Conformal chiral boson models on twisted doubled tori and non-geometric string vacua
Avramis, Spyros D; Prezas, Nikolaos
2009-01-01
We derive and analyze the conditions for quantum conformal and Lorentz invariance of the duality symmetric interacting chiral boson sigma-models, which are conjectured to describe non-geometric string theory backgrounds. The one-loop Weyl and Lorentz anomalies are computed for the general case using the background field method. Subsequently, our results are applied to a class of (on-shell) Lorentz invariant chiral boson models which are based on twisted doubled tori. Our findings are in agreement with those expected from the effective supergravity approach, thereby firmly establishing that the chiral boson models under consideration provide the string worldsheet description of N=4 gauged supergravities with electric gaugings. Furthermore, they demonstrate that twisted doubled tori are indeed the doubled internal geometries underlying a large class of non-geometric string compactifications. For compact gaugings the associated chiral boson models are automatically conformal, a fact that is explained by showing ...
Conformation-independent structural comparison of macromolecules with ProSMART
Energy Technology Data Exchange (ETDEWEB)
Nicholls, Robert A., E-mail: nicholls@mrc-lmb.cam.ac.uk [MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH (United Kingdom); Fischer, Marcus [University of California San Francisco, San Francisco, CA 94158 (United States); McNicholas, Stuart [University of York, Heslington, York YO10 5DD (United Kingdom); Murshudov, Garib N. [MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH (United Kingdom)
2014-09-01
The Procrustes Structural Matching Alignment and Restraints Tool (ProSMART) has been developed to allow local comparative structural analyses independent of the global conformations and sequence homology of the compared macromolecules. This allows quick and intuitive visualization of the conservation of backbone and side-chain conformations, providing complementary information to existing methods. The identification and exploration of (dis)similarities between macromolecular structures can help to gain biological insight, for instance when visualizing or quantifying the response of a protein to ligand binding. Obtaining a residue alignment between compared structures is often a prerequisite for such comparative analysis. If the conformational change of the protein is dramatic, conventional alignment methods may struggle to provide an intuitive solution for straightforward analysis. To make such analyses more accessible, the Procrustes Structural Matching Alignment and Restraints Tool (ProSMART) has been developed, which achieves a conformation-independent structural alignment, as well as providing such additional functionalities as the generation of restraints for use in the refinement of macromolecular models. Sensible comparison of protein (or DNA/RNA) structures in the presence of conformational changes is achieved by enforcing neither chain nor domain rigidity. The visualization of results is facilitated by popular molecular-graphics software such as CCP4mg and PyMOL, providing intuitive feedback regarding structural conservation and subtle dissimilarities between close homologues that can otherwise be hard to identify. Automatically generated colour schemes corresponding to various residue-based scores are provided, which allow the assessment of the conservation of backbone and side-chain conformations relative to the local coordinate frame. Structural comparison tools such as ProSMART can help to break the complexity that accompanies the constantly growing
Intermediate leak protection/automatic shutdown for B and W helical coil steam generator
International Nuclear Information System (INIS)
The report summarizes a follow-on study to the multi-tiered Intermediate Leak/Automatic Shutdown System report. It makes the automatic shutdown system specific to the Babcock and Wilcox (B and W) helical coil steam generator and to the Large Development LMFBR Plant. Threshold leak criteria specific to this steam generator design are developed, and performance predictions are presented for a multi-tier intermediate leak, automatic shutdown system applied to this unit. Preliminary performance predictions for application to the helical coil steam generator were given in the referenced report; for the most part, these predictions have been confirmed. The importance of including a cover gas hydrogen meter in this unit is demonstrated by calculation of a response time one-fifth that of an in-sodium meter at hot standby and refueling conditions
Conformational design optimization of transcription factor beacon DNA biosensors
Directory of Open Access Journals (Sweden)
Stephen R. Schaffner
2014-12-01
Full Text Available Widespread application of promising DNA-based transcription factor protein (TF biosensors is limited by our ability to control their binding properties. Because the binding properties of this class of biosensors are affected by how well the biosensor switches between binding and non-binding conformations, we investigated the effects of varying conformational stability on the ability of biosensors to detect the oncologically-relevant Myc/Max TF dimer complex. To do this, we employed a custom algorithm that designed and evaluated possible biosensors based on the Myc/Max TF recognition sequence, choosing algorithmic parameters that selected for biosensors with varied conformational stability due to changes in stem length. Biosensors with recognition stem lengths of 8 base pairs (bp, 12 bp, or 21 bp were selected and synthesized. Biosensor binding affinity changes and kinetic association rates were found to be significantly affected by changes in conformational stability (with binding affinity increasing with stem length, from 80 ± 20 nM to 440 ± 80 nM, and kinetic switching rate being tenfold impacted in the longer biosensors. These results show that increased stability can have significant inverse effects on overall biosensor performance, providing important implications for effective biosensor designs. We applied these design insights to generate a biosensor that tested and confirmed a predicted in vivo interaction between two TFs (ATF3 and Max, illustrating the potential for rationally-designed, TF-detecting biosensors as a routine analytical tool.
International Nuclear Information System (INIS)
To evaluate dosimetric consequences generated by the automatic definition based on lesion coverage of prescription isodose. A clinical series of 124 arteriovenous malformations was analysed. Plan quality was quantified by the standard deviation of the differential dose volume histogram calculated in the lesion. We define two quantitative protocols based on lesion coverage for the automatic definition of prescription isodose using a volumetric definition of coverage (90% of lesion volume), and an isodose-based definition proposed) by RTOG (prescription isodose equals minimum isodose in the lesion divided by 0.9). We have evaluated the plans obtained for these two protocols, calculating several dose-volume indices. These indices are presented as a function of dose-volume histogram standard deviation in order to quantify the consequences of their variations for this representative series of plans. The margin our team tolerates is such that the sum of under-dosed lesion and overdosed healthy tissues factors remains lower than one. Protocol based on volumetric coverage gives results situated within this margin. Protocol based on RTOG definition produces conformation indices that could be greater than 1. The absolute dose would be decided taking into account examined dose-volume indices and clinical data. A protocol for automatic definition of prescription isodose using volumetric lesion coverage seems to be more judiciously adapted to arteriovenous malformation conformal plans in stereotactic conditions because of variations observed in the overdosage of healthy tissues. (authors)
ANPS - AUTOMATIC NETWORK PROGRAMMING SYSTEM
Schroer, B. J.
1994-01-01
Development of some of the space program's large simulation projects -- like the project which involves simulating the countdown sequence prior to spacecraft liftoff -- requires the support of automated tools and techniques. The number of preconditions which must be met for a successful spacecraft launch and the complexity of their interrelationship account for the difficulty of creating an accurate model of the countdown sequence. Researchers developed ANPS for the Nasa Marshall Space Flight Center to assist programmers attempting to model the pre-launch countdown sequence. Incorporating the elements of automatic programming as its foundation, ANPS aids the user in defining the problem and then automatically writes the appropriate simulation program in GPSS/PC code. The program's interactive user dialogue interface creates an internal problem specification file from user responses which includes the time line for the countdown sequence, the attributes for the individual activities which are part of a launch, and the dependent relationships between the activities. The program's automatic simulation code generator receives the file as input and selects appropriate macros from the library of software modules to generate the simulation code in the target language GPSS/PC. The user can recall the problem specification file for modification to effect any desired changes in the source code. ANPS is designed to write simulations for problems concerning the pre-launch activities of space vehicles and the operation of ground support equipment and has potential for use in developing network reliability models for hardware systems and subsystems. ANPS was developed in 1988 for use on IBM PC or compatible machines. The program requires at least 640 KB memory and one 360 KB disk drive, PC DOS Version 2.0 or above, and GPSS/PC System Version 2.0 from Minuteman Software. The program is written in Turbo Prolog Version 2.0. GPSS/PC is a trademark of Minuteman Software. Turbo Prolog
Quantum Integrable Systems from Conformal Blocks
Chen, Heng-Yu
2016-01-01
In this note, we extend the striking connections between quantum integrable systems and conformal blocks recently found in http://arxiv.org/abs/1602.01858 in several directions. First, we explicitly demonstrate that the action of quartic conformal Casimir operator on general d-dimensional scalar conformal blocks, can be expressed in terms of certain combinations of commuting integrals of motions of the two particle hyperbolic BC2 Calogero-Sutherland system. The permutation and reflection properties of the underlying Dunkl operators play crucial roles in establishing such a connection. Next, we show that the scalar superconformal blocks in SCFTs with four and eight supercharges and suitable chirality constraints can also be identified with the eigenfunctions of the same Calogero-Sutherland system, this demonstrates the universality of such a connection. Finally, we observe that the so-called "seed" conformal blocks for constructing four point functions for operators with arbitrary space-time spins in four dime...
Phase boundaries in algebraic conformal QFT
International Nuclear Information System (INIS)
We describe the structure of local algebras in relativistic conformal QFT with phase boundaries (topological defects) in two space-time dimensions. The phase boundary conditions are produced by the irreducible components of a certain universal construction.
Parametric dependence of irregular conformal block
Choi, Sang-Kwan
2013-01-01
Irregular conformal block is an important tool to study a new type of conformal theories, which can be constructed as the colliding limit of the regular conformal block. The irregular conformal block is realized as the $\\beta$-deformed Penner matrix model whose partition function is regarded as the inner product of the irregular modules. The parameter dependence of the inner product is obtained explicitly using the loop equation with close attention to singularities in the parameter space. It is noted that the exact singular structure of the parameter space in general can be found using a very simple and powerful method which uses the flow equations of the partition function together with the hierarchical structure of the singularity. This method gives the exact expression to all orders of large $N$ expansion without using the explicit contour integral of the filling fraction.
Nanoporous films: From conventional to conformal
Allendorf, Mark D.; Stavila, Vitalie
2016-03-01
Thin and continuous films of porous metal-organic frameworks can now be conformally deposited on various substrates using a vapour-phase synthesis approach that departs from conventional solution-based routes.
Singular solutions of fractional order conformal Laplacians
Gonzalez, Maria del Mar; Sire, Yannick
2009-01-01
We investigate the singular sets of solutions of conformally covariant elliptic operators of fractional order with the goal of developing generalizations of some well-known properties of solutions of the singular Yamabe problem.
N=1 SUSY Conformal Block Recursive Relations
Belavin, V A
2006-01-01
We present explicit recursive relations for the four-point superconformal block functions that are essentially particular contributions of the given conformal class to the four-point correlation function. The approach is based on the analytic properties of the superconformal blocks as functions of the conformal dimensions and the central charge of the superconformal algebra. The results are compared with the explicit analytic expressions obtained for special parameter values corresponding to the truncated operator product expansion. These recursive relations are an efficient tool for numerically studying the four--point correlation function in Super Conformal Field Theory in the framework of the bootstrap approach, similar to that in the case of the purely conformal symmetry.
Synthesis and conformational features of sym ,',"-triarylguanidines
Indian Academy of Sciences (India)
Kanniyappan Gopi; Brijesh Rathi; Natesan Thirupathi
2010-03-01
A one pot reaction involving sym ,'-diarylthiourea and the respective arylamine in the presence of aq. KOH in nitrobenzene at ≥ 105°C afforded sym ,',"-triarylguanidine in fair to good yield and the products have been characterized. Sym ,',"-tri(4-tolyl)guanidine possesses (7) anti-anti conformation, sym ,',"-tri(2-tolyl)guanidine (8) and sym ,',"-tris(2,4-xylyl)guanidine (11) each possess anti-anti conformation whereas sym ,',"-tris(2-anisyl)guanidine possesses (9) syn-anti conformation as determined by single crystal X-ray diffraction data. The observed conformations appear to result from a subtle balance between steric factor associated with the aryl substituent and multiple electronic factors namely - conjugation/negative hyperconjugation and non-covalent interactions in the crystal lattice.
On the conformational state of photoinactivated tyrosinase
International Nuclear Information System (INIS)
Ultraviolet irradiation of tyrosinase rapidly decreased the dopa oxidase activity of the enzyme. Hydrodynamic, kinetic and thermodynamic parameters revealed gross differences in the native and photoinactivated states of the enzyme. The native state of tyrosinase was characterized as a tetramer with a compact, globular and rigid conformation. However, the photoinactivated state of tyrosinase was thermodynamically less stable and unusually sensitive to temperatures as low as 35 0C. From the dose dependent loss in conformational integrity, thermodynamic stability and catalytic activity of tyrosinase, it is speculated that there are various structural segments distributed throughout the enzyme molecule. These structural segments act as centres of major molecular forces which hold the tetrameric enzyme into a compact and globular conformation. UV modification of these segments triggers a series of conformational changes leading to formation of a partially unfolded and catalytically inactive form of tyrosinase. (author)