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Sample records for autochthonous non-white rot

  1. Autochthonous "Bjelovars dried cheese"

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    Slavko Kirin

    2006-12-01

    Full Text Available «Dried cheese» is in autochthonous group of Bjelovar region cheeses which is still produced in rural domestic scale. The name of cheese originates from production procedure - drying for longer or shorter period in airy place after which the cheese is smoked, or is smoked only without drying. This type of cheese is produced in whole central region of Croatia which includes Međimurje, Podravina, Bilogora; Moslavina, Posavina and region around the capital. The aim of this paper is to describe and determine sensory, chemical and microbiological composition to determine its characteristics and production standards. As standards for sensory properties following characteristics can be used: a Outer shape: dimensions: diameter: 140-145 mm, height: 58-61 mm, mass: 700-750 g, equal, rounded shape, smooth skin, equal colour; b Consistency: easily cut, elastic, soft; c Cut: nicely combined white body, few improper holes of equal size; d Odour: pleasant milky acid odour, fairly smoky; e Taste: Fairly milky acidic taste, medium salty, fairly smoky taste. Depending on fat in dry matter content and water content in non fat dry matter, analyzed samples can be characterized as quarter fat, soft and semidry cheese. Higher acidity and saltiness was determined in some samples, microbiological analyses has shown that the most common contaminants are yeasts and moulds.

  2. Plato: White and Non-white Love

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    Amo Sulaiman

    2009-06-01

    Full Text Available Plato’s dialogues, the Symposium, and Phaedrus, provide a reasonableexplanation of love. G. Vlastos and M. Nussbaum do not share such anopinion. The former contends that Plato’s view of love is about lovingonly a person’s beauty, but not the entire person; thus, it falls short of anappropriate explanation of love. The latter holds that a theory of love should be complete, and that Plato’s one is incomplete on the grounds that it does not account for personal love. These criticisms will be re-evaluated in light of the duality of love (the white and non-white horses—in Phaedrus as well as participants’ views in the Symposium; a re-assessment will weaken the mentioned objections. This paper contends that from the Symposium and Phaedrus, one can have a fruitful understanding of being in love, being out of love, falling inlove, loving for its own sake and being erotically in love. In order to account for these related issues of love it is important to consider Plato’s works in terms of his “official” and “unofficial” views. The former is construed as the doctrine of the lover or loving for its own sake: this is associates with Diotima’s views which are repeated by Socrates. With reference to the latter, it is possible to explain what personal love or being in love, being out of love, falling in love, and being erotically in love involve. Erotic love will be interpreted as an extension of our philosophical conception of love, related to views of love that are mentioned in the Symposium other than Socrates’ report of Diotima’s conceptions. This paper is divided into two parts: the first one will show views of love in the Symposium. That is, being in love, being out of love, falling in love and loving for its own sake will be discussed. In addition, the forementioned criticisms will be re-evaluated. In the second section, we will show that Aristophanes’ speech expresses erotic love, and then Kant’s objections will be

  3. [Autochthonous microbiota, probiotics and prebiotics].

    Science.gov (United States)

    Suárez, Juan Evaristo

    2015-02-07

    The autochthonous microbiota is the community of microorganisms that colonizes the skin and mucosal surfaces. The symbiosis is, generally, mutualistic but it can become parasitic due to immune response alterations. The skin microbiota includes bacteria (95%), lipophilic fungi and mites. In the digestive apparatus, each cavity presents its own microbiota, which reaches its target organ during the perinatal period, originating complex and stable communities (homeostasis). The vaginal microbiota varies with the endocrine activity, significantly increasing during the fertile and pregnancy periods, when lactobacilli are the most abundant organisms. Four are the main benefits of the autochthonous microbiota: i) delivery of essential nutrients, such as vitamins and some amino acids; ii) utilization of undigestible diet components, the colonic microbiota degrades complex glycans and fulfils almost 20% of the calories present in a normal diet; iii) development of the immune system: the continuous contact with the immune system maintains it alert and in good shape to repel pathogens efficaciously and iv) microbial antagonism, hinders colonization of our mucosal surfaces by alochthonous, potentially pathogenic, organisms. This works through three mechanisms: colonization interference, production of antimicrobials and co-aggregation with the potential pathogens. The microbiota can, sporadically, produce damages: opportunistic endogenous infections and generation of carcinogenic compounds. Probiotics are "live microorganisms that when administered in adequate amounts, confer a health benefit to the consumer". Prebiotics are undigestible glycans that enhance the growth or activity of the intestinal microbiota, thus generating a health benefit. Synbiotics are mixes of probiotics and prebiotics that exert a synergistic health effect.

  4. Autochthonous cheeses of Bosnia and Herzegovina

    OpenAIRE

    Zlatan Sarić; Sonja Bijeljac

    2003-01-01

    Despite the migration of people towards cities, autochthonous cheeses in Bosnia and Herzegovina survived. Technologies of these cheeses are simple and adapted to humble mountain limitations. Geographical occasions and rich mountain pastures created a certain participation of ewe's milk cheeses. Communicative isolation of hilly-mountain regions resulted in "closed" cheese production in small households. Autochthonous cheeses in Bosnia and Herzegovina have various origins. Different cheeses are...

  5. Selection of autochthonous sour cherry (Prunus cerasus L. genotypes in Feketić region

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    Radičević Sanja

    2012-01-01

    Full Text Available Autochthonous genotypes of fruit species are very important source of genetic variability and valuable material for breeding work. Fruit Research Institute-Čačak has a long tradition of studying autochthonous genotypes of temperate fruits sporadically spread and preserved in some localities in Serbia. Over 2005-2006, the following properties of nine autochthonous sour cherry genotypes grown in Feketic region were investigated: flowering and ripening time, pomological properties, biochemical composition of fruits and field resistance to causal agents of cherry diseases - cherry leaf spot (Blumeriella jaapii (Rehm. v. Arx., shot-hole (Clasterosporium carpophilum (Lév. Aderh. and brown rot (Monilinia laxa /Ader et Ruhl./ Honey ex Whetz.. The genotypes were tested for the presence of Prune dwarf virus and Prunus necrotic ring spot virus. In majority of genotypes fruits were large, with exceptional organoleptical properties, whereas ripening time was in the first ten or twenty days of June. The highest fruit weight was observed in F-1 genotype (8.1 g. The highest soluble solids and total sugars content were found in F- 4 genotype (17.60% and 14.25%, respectively. As for field resistance to causal agents of diseases and good pomo-technological properties, F-1, F-2, F-3, F-7 and F-8 genotypes were singled out. [Projekat Ministarstva nauke Republike Srbije, br. TR31064

  6. Autochthonous cheeses of Bosnia and Herzegovina

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    Zlatan Sarić

    2003-04-01

    Full Text Available Despite the migration of people towards cities, autochthonous cheeses in Bosnia and Herzegovina survived. Technologies of these cheeses are simple and adapted to humble mountain limitations. Geographical occasions and rich mountain pastures created a certain participation of ewe's milk cheeses. Communicative isolation of hilly-mountain regions resulted in "closed" cheese production in small households. Autochthonous cheeses in Bosnia and Herzegovina have various origins. Different cheeses are produced in different parts of Bosnia and Herzegovina. There are : Travnički cheese, Masni (fat cheese, Presukača, Sirac, Livanjski cheese, Posni (lean cheese, "Suvi" (dry cheese or "Mješinski" full fat cheese matured in sheepskin bag, fresh sour milk cheese "Kiseli" and dried sour milk cheese "Kiseli", Zajednica, Basa, Kalenderovački cheese and goat's milk cheeses (Hard and White soft goat's milk cheese, "Zarica" and Urda. Besides above-mentioned types of cheese in Bosnia and Herzegovina some other autochthonous dairy products are produced: Kajmak (Cream, Maslo (Rendered butter and Zimsko kiselo mlijeko (Winter sour milk. The specificity in Bosnia and Herzegovina is that autochthonous dairy products are still mainly both produced and consumed in small rural households. Exceptions are Travnički cheese and Kajmak that are significantly sold at market. Only Livanjski cheese is manufactured as industry dairy product.

  7. Disease notes - Bacterial root rot

    Science.gov (United States)

    Bacterial root rot initiated by lactic acid bacteria, particularly Leuconostoc, occurs every year in Idaho sugarbeet fields. Hot fall weather seems to make the problem worse. Although Leuconostoc initiates the rot, other bacteria and yeast frequently invade the tissue as well. The acetic acid bac...

  8. The Influence of Non-White Pupil Classroom Composition on Classroom Quality.

    Science.gov (United States)

    Frenk, James H.

    The study described here is an attempt to answer the question: does the classroom ratio of non-white to white pupils influence the quality of the behavior of the participants in integrated classrooms? And, if so, is there an optimum ratio of classroom racial composition? To carry out such an investigation, an instrument designed to provide a…

  9. Autochthonous clams monitoring of Ganzirri Lake (Sicily).

    Science.gov (United States)

    Di Bella, Giuseppa; Cavallaro, Novella; Lo Turco, Vincenzo; Furci, Patrizia; Rando, Rossana; La Pera, Lara; Dugo, Giacomo

    2010-12-01

    Two autochthonous clams, Venerupis aurea laeta and Cerastoderma edule/glaucum, collected for a period of 1 year, from May 2007 to January 2008, were studied in the Cape Peloro lagoon. On the samples, it was evaluated the presence of pathogenic microorganisms and proteins, lipids and yield edible part were determined. It was evaluated the concentration of mineral elements (Cd, Cu, Mn, Se, Pb, Zn) and organic contaminants (∑DDT and PCBs). Salmonella is never present in any sample. Total and faecal coliform values have always been under law limits for alive bivalves mussels production and sale. Zn, Cu, Cd and Pb levels were found in clams where they are slightly lower too. Both species do not show significant changes for Mn and Se. DDT and PCBs traces were discovered in Ganzirri Lake' samples, but in all observed cases, they were below law limits. As a result of all these observations, it is clear that, in recent years, the bivalve's use of Ganzirri Lake does not denote toxicological risk to human health.

  10. Autochthonous Linguistic Minorities in the Italian Alps:

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    Ernst Steinicke

    2011-08-01

    Full Text Available More than any other area in Western Europe, the Alps, especially the Italian Alps, are home to great ethno-cultural diversity: there, no less than seven autochthonous linguistic minorities coexist side by side with the respective official majority. Now being considered an important cultural heritage by the state as well as by the regions, new legislation offers protection to all ‘linguistic-historic minorities’ in Italy. Our study shows, however, that it is quite difficult to maintain such groups, since it is largely unknown where exactly the minority areas are situated. Based on that, local actor groups in various communities take advantage of this lack of knowledge and declare themselves minority territories although they show no linguistic varieties. An important objective of this project is therefore to present a cartographic representation of this linguistic diversity. Subsequently, the contribution discusses case studies of distinct ethno-linguistic self-awareness. Even though with Law No. 482 a first important step was taken to preserve the linguistic minorities, their progressive decline by territorial and numerical criteria cannot be denied. Today, besides unfavorable bio-demographic factors and “diffuse ethnicity,” other causes are current demographic processes. In this framework the amenity migrants, those new immigrants who have discovered the mountains as a new, desirable settlement space, play a decisive role by reinforcing the assimilation process.Les Alpes, plus précisément les Alpes italiennes, plus que toute autre région d'Europe Occidentale, sont un lieu de grande diversité ethnoculturelle : pas moins de sept minorités linguistiques autochtones y coexistent, côte à côte avec la majorité officielle correspondante. Maintenant considérées comme un héritage culturel important par les états ainsi que par les régions, une nouvelle législation offre une protection à toutes les « minorités linguistiques

  11. MOLECULAR IDENTIFICATION AND GENOTYPING OF CIAUSCOLO AUTOCHTHONOUS MICROFLORA: PRELIMINARY STUDY

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    A. Petruzzelli

    2011-01-01

    Full Text Available The present study reports the results of a preliminary characterization of the bacterial population of Ciauscolo, a typical Italian fermented sausage, traditionally manufactured in Marche region. The bacterial community involved in Ciauscolo fermentation was investigated using both molecular and culturebased methods. The estimation of genotypic intra-species variation of the autochthonous bacteria isolated was also evaluated by using randomly amplified polymorphic DNA (RAPD analysis and unweighted pairgroup method with arithmetic averages (UPGMA cluster analysis. Our findings revealed an high diversity of the autochthonous bacterial population investigated, both at species and strain level.

  12. Non-white noise in fMRI: Does modelling have an impact?

    DEFF Research Database (Denmark)

    Lund, Torben Ellegaard; Madsen, Kristoffer Hougaard; Sidaros, Karam;

    2006-01-01

    are typically modelled as an autoregressive (AR) process. In this paper, we propose an alternative approach: Nuisance Variable Regression (NVR). By inclusion of confounding effects in a general linear model (GLM), we first confirm that the spatial distribution of the various fMRI noise sources is similar......The sources of non-white noise in Blood Oxygenation Level Dependent (BOLD) functional magnetic resonance imaging (fMRI) are many. Familiar sources include low-frequency drift due to hardware imperfections, oscillatory noise due to respiration and cardiac pulsation and residual movement artefacts...

  13. Non-white noise in fMRI: does modelling have an impact?

    DEFF Research Database (Denmark)

    Lund, Torben E; Madsen, Kristoffer H; Sidaros, Karam;

    2006-01-01

    are typically modelled as an autoregressive (AR) process. In this paper, we propose an alternative approach: Nuisance Variable Regression (NVR). By inclusion of confounding effects in a general linear model (GLM), we first confirm that the spatial distribution of the various fMRI noise sources is similar......The sources of non-white noise in Blood Oxygenation Level Dependent (BOLD) functional magnetic resonance imaging (fMRI) are many. Familiar sources include low-frequency drift due to hardware imperfections, oscillatory noise due to respiration and cardiac pulsation and residual movement artefacts...

  14. Autochthonous Transmission of Trypanosoma Cruzi in Southern California

    Science.gov (United States)

    Hernandez, Salvador; Flores, Carmen A.; Viana, Gracia M.; Sanchez, Daniel R.; Traina, Mahmoud I.

    2016-01-01

    Trypanosoma cruzi usually infects humans via triatomine insects in Latin America. Vector-borne transmission in the United States is exceedingly rare. We describe (1) the first case of probable autochthonous transmission reported in California in more than 30 years and (2) the first ever reported case in the greater Los Angeles area. PMID:28018928

  15. Authenticity and autochthonous traditions in archaic and Hellenistic poetry

    NARCIS (Netherlands)

    Klooster, Julia

    2016-01-01

    J.J.H. Klooster, ‘Authenticity and autochthonous traditions in archaic and Hellenistic poetry’. In E. Bakker (ed): Authorship, Authority and Authenticity in Archaic and Classical Greek Song. Proceedings of the Network for the Study of Archaic and Classical Greek Song, Vol. 2, Leiden: Brill

  16. Reemergence and Autochthonous Transmission of Dengue Virus, Eastern China, 2014.

    Science.gov (United States)

    Wang, Wen; Yu, Bin; Lin, Xian-Dan; Kong, De-Guang; Wang, Jian; Tian, Jun-Hua; Li, Ming-Hui; Holmes, Edward C; Zhang, Yong-Zhen

    2015-09-01

    In 2014, 20 dengue cases were reported in the cities of Wenzhou (5 cases) and Wuhan (15 cases), China, where dengue has rarely been reported. Dengue virus 1 was detected in 4 patients. Although most of these cases were likely imported, epidemiologic analysis provided evidence for autochthonous transmission.

  17. Non-white noise and a multiple-rate Markovian closure theory for turbulence

    CERN Document Server

    Hammett, G W; Hammett, Gregory W.; Bowman, John C.

    2002-01-01

    Markovian models of turbulence can be derived from the renormalized statistical closure equations of the direct-interaction approximation (DIA). Various simplifications are often introduced, including an assumption that the two-time correlation function is proportional to the renormalized infinitesimal propagator (Green's function), i.e. the decorrelation rate for fluctuations is equal to the decay rate for perturbations. While this is a rigorous result of the fluctuation--dissipation theorem for thermal equilibrium, it does not necessarily apply to all types of turbulence. Building on previous work on realizable Markovian closures, we explore a way to allow the decorrelation and decay rates to differ (which in some cases affords a more accurate treatment of effects such as non-white noise), while retaining the computational advantages of a Markovian approximation. Some Markovian approximations differ only in the initial transient phase, but the multiple-rate Markovian closure (MRMC) presented here could modi...

  18. Tracking the autochthonous carbon transfer in stream biofilm food webs.

    Science.gov (United States)

    Risse-Buhl, Ute; Trefzger, Nicolai; Seifert, Anne-Gret; Schönborn, Wilfried; Gleixner, Gerd; Küsel, Kirsten

    2012-01-01

    Food webs in the rhithral zone rely mainly on allochthonous carbon from the riparian vegetation. However, autochthonous carbon might be more important in open canopy streams. In streams, most of the microbial activity occurs in biofilms, associated with the streambed. We followed the autochthonous carbon transfer toward bacteria and grazing protozoa within a stream biofilm food web. Biofilms that developed in a second-order stream (Thuringia, Germany) were incubated in flow channels under climate-controlled conditions. Six-week-old biofilms received either ¹³C- or ¹²C-labeled CO₂, and uptake into phospholipid fatty acids was followed. The dissolved inorganic carbon of the flow channel water became immediately labeled. In biofilms grown under 8-h light/16-h dark conditions, more than 50% of the labeled carbon was incorporated in biofilm algae, mainly filamentous cyanobacteria, pennate diatoms, and nonfilamentous green algae. A mean of 29% of the labeled carbon reached protozoan grazer. The testate amoeba Pseudodifflugia horrida was highly abundant in biofilms and seemed to be the most important grazer on biofilm bacteria and algae. Hence, stream biofilms dominated by cyanobacteria and algae seem to play an important role in the uptake of CO₂ and transfer of autochthonous carbon through the microbial food web.

  19. 7 CFR 29.6039 - Stem rot.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 2 2010-01-01 2010-01-01 false Stem rot. 29.6039 Section 29.6039 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING SERVICE (Standards, Inspections, Marketing... INSPECTION Standards Definitions § 29.6039 Stem rot. The deterioration of an uncured or frozen stem...

  20. Intercultural Profiles and Adaptation Among Immigrant and Autochthonous Adolescents.

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    Inguglia, Cristiano; Musso, Pasquale

    2015-02-01

    Few studies examine relationships between intercultural strategies and adaptation among adolescents using a person-oriented approach. Framed from an intercultural psychology perspective, this study used such an approach in order to examine the influence of intercultural profiles, patterns of relationships among variables related to intercultural strategies, on the adaptation of adolescents of both non-dominant and dominant groups. Two hundred and fifty-six adolescents living in Italy and aged from 14 to 18 participated to the study: 127 immigrants from Tunisia (males = 49.61%) and 129 autochthonous (males = 44.19%). Data were collected through self-report questionnaires. Using cluster analytic methods to identify profiles, the results showed that immigrant adolescents were divided in two acculturation profiles, ethnic and integrated-national, with adolescents belonging to the latter showing higher self-esteem, life satisfaction and sociocultural competence than the former. Also among autochthonous adolescents two acculturation expectation profiles were identified, not-multicultural and multicultural, with adolescents belonging to the latter showing higher self-esteem and life satisfaction than the former. Findings highlight the importance of using multiple indicators in order to gain a more comprehensive understanding of the acculturation process as well as suggesting implications for the social policies in this field.

  1. Root rot in sugar beet piles at harvest

    Science.gov (United States)

    Sugar beet root rots are not only a concern because of reduced yields, but can also be associated with losses in storage. Our primary sugar beet root rot disease problem in the Amalgamated production area is Rhizoctonia root rot. However, this rot frequently only penetrates a short distance past t...

  2. Water relations in untreated and modified wood under brown-rot and white-rot decay

    DEFF Research Database (Denmark)

    Thybring, Emil Engelund

    2017-01-01

    One key requisite for fungal decay of wood is water within cell walls. While several reviews have focused on the mechanistic relationship between water and decay of wood, this study is the first review of water relations of decayed wood material. Based on a vast compilation of experimental data...... from several literature sources, the water relations of untreated and modified wood decayed by brown-rot and white-rot fungi are examined. The aim is to investigate to what extent observations and assumptions regarding brown-rot and white-rot decay can explain changes in water relations observed during...... and after decay. Although the available experimental data for modified wood is scarce, it indicates that brown-rot and white-rot decay of non-resistant modified wood occurs by similar degradation mechanisms with similar effects on water relations as for untreated wood. From simplistic, mathematical...

  3. Characterization of autochthonous Lactobacillus paracasei strains on potential probiotic ability

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    Zorica Radulović

    2010-06-01

    Full Text Available Lactic acid bacteria strains isolated from traditional made cheeses constitute a reservoir of unexplored potential in biotechnology. In this study four autochthonous lactobacilli strains, isolated from traditional white brined cheeses and identified as Lactobacillus paracasei (08, 564, 05 and 02, were investigated on potential probiotic ability. The investigation comprised sensitivity to simulated gastrointestinal tract conditions, antimicrobial activity against wide range of pathogens, antibiotic resistance as well as autoaggregation ability. Lactobacillus rhamnosus GG was used as referent strain. Three tested strains grew well in simulated gastrointestinal conditions, but their sensitivity was greater on bile acids and pancreatin compared with pepsin low pH 2.5. The examined strains had different sensitivity to antibiotics, but three strains showed very good antimicrobial activity to pathogens. All strains demonstrated very good autoaggregation ability. For three of four examined strains of Lb. paracasei probiotic potential was similar with referent strain Lb. rhamnosus GG, determined in vitro

  4. Development of an autochthonous starter culture for spreadable goat cheese

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    Florencia FRAU

    Full Text Available Abstract The aim of this work was to select strains of LAB autochthonous from Santiago del Estero to formulate a starter culture for making spreadable goat cheese. Four strains were selected: CRL1799 (Lactobacillus fermentum with high acidifying activity, CRL1803 (Lactobacillus fermentum with high proteolytic activity, CRL1808 (Lactobacillus rhamnosus with production of exopolysaccharide and CRL1785 (Enterococcus faecium with diacetyl-acetoin production. The selected strains showed qualities that make them useful as starter culture in the elaboration of spreadable cheese. This starter culture is an alternative that allows obtaining differentiated products. The inclusion of CRL1808 strains seems to improve the rheology and texture, excluding the use of additives.

  5. AUTOCHTHONOUS APPROACHING IN THE MANAGEMENT OF THE SECURITY RISK

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    Burtescu Emil

    2008-05-01

    Full Text Available An optimal management for a corporation, no matter what size the corporation is, it must contain the management of the security risk. On the importance that is given to the risk management can depend the well functioning of the corporation. An important role in this process has the owner of the business and the way that this one understands the risk. A good understanding of the risk by the owner will have as effect the allocation of sufficient funds to implement controls meant to bring the risk level in order to be an acceptable one. The autochthonous corporations, in a great part even because of the inexistence of reglementations in this domain, have an empiric approach of the phenomena.

  6. Autochthonous and Allochthonous Carbon Cycling in a Eutrophic Flow-Through Wetland

    Science.gov (United States)

    Wetland environments are important sites for the cycling and retention of terrestrially derived organic matter and nutrients, the influx of which subsidizes wetland C sequestration, as well as fueling autochthonous C productivity. Wetland treatment of agricultural runoff has been...

  7. Italian autochthonous pigs: progress report and research perspectives

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    O. Franci

    2010-04-01

    Full Text Available Characteristics and research perspectives of autochthonous Italian pig are summarised and discussed. Nowadays only six breeds are still farmed (Mora Romagnola, Cinta Senese, Casertana, Calabrese, Nero Siciliano and Sarda, on twenty-one local pig genotypes existing in Italy at beginning of the last century. Recently all the breeds are recorded on the National Pedigree Register. For the genetic conservation of these populations, an adequate management of mating appears fundamental to limit the inbreeding and to increase the genetic variability, as nowadays it is carried out in Cinta Senese that offers the deepest pedigree. For Nero Siciliano and Sarda, individuation of morphological standard and recovery of appropriate genotypes appear also urgent. From the recent literature it is evident that the local breeds are worse than the improved ones in reproductive performance and productive traits as growth rate, feed conversion and carcass composition but they show interesting quality of meat and fat. Among the six breeds Cinta Senese, Mora Romagnola and Casertana seem to show higher body size and faster growth rate. The link with free-range rearing increases the commercial value of products of local pigs, because of both effective characterization and consumer suggestion, but research is helpful to increase the knowledge of their rearing system. The more interesting fields of research seem the following: genetic traceability; feeding traceability; evolution of body composition; sustainable exploitation of natural resources.

  8. Metabolic and biological profile of autochthonous Vitis vinifera L. ecotypes.

    Science.gov (United States)

    Impei, Stefania; Gismondi, Angelo; Canuti, Lorena; Canini, Antonella

    2015-05-01

    Vitis vinifera L. is a plant species rich in phenolic compounds that are usually associated with the health benefits of wine and grape consumption in the diet. Anthocyanins, catechins, flavonol, phenolic acids and stilbenes are key molecular constituents of the Vitis berries, affecting the quality of grape products. The purpose of this work was to identify the metabolic profiles of 37 genetically certified V. vinifera Latial accessions. In particular, qualitative and quantitative analyses of specific secondary metabolites and total phenolic and tannin contents were performed by LC-MS and spectrophotometric analysis. In addition, since plant molecules are well-known for their free radical scavenging properties, the antioxidant effects of the sample extracts were evaluated through two different antiradical assays: DPPH and FRAP tests. Finally, a preliminary screening of the antiproliferative activity of each specimen on HCT-116 human colorectal cancer cells was conducted. All the results showed a great variety and amount of phenolic compounds in all accessions; moreover, we observed a significant correlation in the extracts between the metabolite concentration and bioactivity. Besides, some samples presented extraordinary biological effects, such as reduction of tumor cell growth not associated with cytotoxicity, supporting their use as possible future adjuvants for cancer therapy. In conclusion, the present research increased the scientific knowledge about Italian autochthonous vine ecotypes in order to valorize them and support their reintroduction in the local economic system.

  9. Autochthonous Hepatitis E Virus Infection in Europe: A Matter of Concern for Public Health?

    OpenAIRE

    Echevarría, José-Manuel

    2014-01-01

    Human hepatitis E virus (HHEV) is the proposed name for a diverse group of RNA viruses from the family Hepeviridae that cause acute hepatitis among humans. Waterborne strains are regularly imported into Europe by international travelers, and virus transmission of zoonotic strains via contaminated aliments is involved in autochthonous cases. Therefore, in Europe, hepatitis E displays a unique dual character, having features of both imported and autochthonous infections. Environmental involveme...

  10. Application of autochthonous mixed starter for controlled Kedong sufu fermentation in pilot plant tests.

    Science.gov (United States)

    Feng, Zhen; Xu, Miao; Zhai, Shuang; Chen, Hong; Li, Ai-li; Lv, Xin-tong; Deng, Hong-ling

    2015-01-01

    Traditional sufu is fermented by back-slopping and back-slopping has many defects. The objective of this study was to apply autochthonous mixed starter to control Kedong sufu fermentation. Sufu was manufactured using back-slopping (batch A) and autochthonous mixed starter (batch B) with Kocuria kristinae F7, Micrococcus luteus KDF1, and Staphylococcus carnosus KDFR1676. Considering physicochemical properties of sufu, 150-day sufu samples from batch A and 90-day sufu samples from batch B met the standard requirements, respectively. Considering sensory characteristics of sufu, 150-day sufu samples from batch A and 90-day sufu samples from batch B showed no significant differences (P > 0.05). The maturation period of sufu was shortened by 60 d. Profiles of free amino acids and peptides partly revealed the mechanism of typical sensory quality and shorter ripening time of sufu manufactured by autochthonous mixed starter. In final products, content of total biogenic amines was reduced by 48%. Autochthonous mixed starter performed better than back-slopping. Fermentation had a positive influence on the quality, safety, and sensory properties of sufu. The application of autochthonous mixed starter does not change the sensory characteristics of traditional fermented sufu. In addition, it reduces maturation period and improves their homogeneity and safety. It is possible to substitute autochthonous mixed starter for back-slopping in the manufacture of sufu.

  11. New source of bacterial soft rot resistance in potato tubers

    Science.gov (United States)

    Bacterial soft rot caused by Pectobacterium and Dickeya species can cause major losses to the potato (Solanum tuberosum L.) industry, mostly due to tuber rot in storage. There are few germplasm resources for soft rot resistance breeding. Here, we introduce a resistant diploid wild potato relative, M...

  12. Characterization of virgin olive oils produced with autochthonous Galician varieties.

    Science.gov (United States)

    Reboredo-Rodríguez, Patricia; González-Barreiro, Carmen; Cancho-Grande, Beatriz; Valli, Enrico; Bendini, Alessandra; Gallina Toschi, Tullia; Simal-Gandara, Jesus

    2016-12-01

    The interest of Galician oil producers (NW Spain) in recovering the ancient autochthonous olive varieties Brava and Mansa has increased substantially in recent years. Virgin olive oils produced by co-crushing both varieties in two different proportions, reflecting the usual and most common practice adopted in this region, have gradually emerged for the production of virgin olive oils. Herein, the sensory and chemical characteristics of such oils were characterized by quality and genuineness-related parameters. The results of chemical analysis are discussed in terms of their effective contribution to the sensory profile, which suggests useful recommendations for olive oil producers to improve the quality of oils. Antioxidant compounds, together with aromas and coloured pigments were determined, and their contribution in determining the functional value and the sensory properties of oils was investigated. In general, given the high levels of phenolic compounds (ranging between 254 and 375mg/kg oil), tocopherols (about 165mg/kg oil) and carotenoids (10-12mg/kg oil); these are oils with long stability, especially under dark storage conditions, because stability is reinforced with the contribution of chlorophylls (15-22mg/kg oil). A major content of phenolic compounds, as well as a predominance of trans-2-hexen-1-al within odor-active compounds (from 897 to 1645μg/kg oil), responsible for bitter sensory notes. This characterization allows to developing new antioxidant-rich and flavour-rich VOOs, when co-crushing with a higher proportion of Brava olives, satisfying the consumers' demand in having access to more healthy dishes and peculiar sensory attributes.

  13. Antimicrobial Susceptibility of Autochthonous Aquatic Vibrio cholerae in Haiti

    Science.gov (United States)

    Baron, Sandrine; Lesne, Jean; Jouy, Eric; Larvor, Emeline; Kempf, Isabelle; Boncy, Jacques; Rebaudet, Stanilas; Piarroux, Renaud

    2016-01-01

    We investigated the antimicrobial susceptibility of 50 environmental isolates of Vibrio cholerae non-O1/non-O139 collected in surface waters in Haiti in July 2012, during an active cholera outbreak. A panel of 16 antibiotics was tested on the isolates using the disk diffusion method and PCR detection of seven resistance-associated genes (strA/B, sul1/2, ermA/B, and mefA). All isolates were susceptible to amoxicillin-clavulanic acid, cefotaxime, imipenem, ciprofloxacin, norfloxacin, amikacin, and gentamicin. Nearly a quarter (22.0%) of the isolates were susceptible to all 16 antimicrobials tested and only 8.0% of the isolates (n = 4) were multidrug-resistant. The highest proportions of resistant isolates were observed for sulfonamide (70.0%), amoxicillin (12.0%), and trimethoprim-sulfamethoxazole (10.0%). One strain was resistant to erythromycin and one to doxycycline, two antibiotics used to treat cholera in Haiti. Among the 50 isolates, 78% possessed at least two resistance-associated genes, and the genes sul1, ermA, and strB were detected in all four multidrug-resistant isolates. Our results clearly indicate that the autochthonous population of V. cholerae non-O1/non-O139 found in surface waters in Haiti shows antimicrobial patterns different from that of the outbreak strain. The presence in the Haitian aquatic environment of V. cholerae non-O1/non-O139 with reduced susceptibility or resistance to antibiotics used in human medicine may constitute a mild public health threat. PMID:27818656

  14. Etiology of phomopsis root rot in soybean

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    Valéria Cecília Ghissi

    2014-09-01

    Full Text Available In a survey of damages caused by soybean root rot to crops in the south of Brazil for several years, a root rot caused by Phomopsis sp has been found with increasing frequency. The primary symptoms are seen when the main root is cut longitudinally, including the death of the wood which shows white coloration and well-defined black lines that do not have a defined format. Thus, based on similarity, it has been called geographic root rot due to its aspect resembling irregular lines that separate regions on a map. In isolations, colonies and alpha spores of Phomopsis have prevailed. Pathogenicity test was done by means of inoculation in the crown of plants cultivated in a growth chamber. The geographic symptoms were reproduced in plants and the fungus Phomopsis sp. was reisolated. In soybean stems naturally infected with pod and stem blight, geographic symptoms caused by Phomopsis phaseoli are found. To the known symptoms on stems, pods and grains, that of root rot caused by P. phaseoli is now added.

  15. Postharvest Rhizopus rot on sugar beet

    Science.gov (United States)

    Rhizopus species have been reported as a minor post-harvest rot on sugar beet, particularly under temperatures above 5 deg C. In 2010, Rhizopus was isolated from beets collected from Michigan storage piles in February at a low frequency. However, recent evidence from Michigan has found a high incide...

  16. Isolation of laccase gene-specific sequences from white rot and brown rot fungi by PCR

    Energy Technology Data Exchange (ETDEWEB)

    D`Souza, T.M.; Boominathan, K.; Reddy, C.A. [Michigan State Univ., East Lansing, MI (United States)

    1996-10-01

    Degenerate primers corresponding to the consensus sequences of the copper-binding regions in the N-terminal domains of known basidiomycete laccases were used to isolate laccase gene-specific sequences from strains representing nine genera of wood rot fungi. All except three gave the expected PCR product of about 200 bp. Computer searches of the databases identified the sequences of each of the PCR product of about 200 bp. Computer searches of the databases identified the sequence of each of the PCR products analyzed as a laccase gene sequence, suggesting the specificity of the primers. PCR products of the white rot fungi Ganoderma lucidum, Phlebia brevispora, and Trametes versicolor showed 65 to 74% nucleotide sequence similarity to each other; the similarity in deduced amino acid sequences was 83 to 91%. The PCR products of Lentinula edodes and Lentinus tigrinus, on the other hand, showed relatively low nucleotide and amino acid similarities (58 to 64 and 62 to 81%, respectively); however, these similarities were still much higher than when compared with the corresponding regions in the laccases of the ascomycete fungi Aspergillus nidulans and Neurospora crassa. A few of the white rot fungi, as well as Gloeophyllum trabeum, a brown rot fungus, gave a 144-bp PCR fragment which had a nucleotide sequence similarity of 60 to 71%. Demonstration of laccase activity in G. trabeum and several other brown rot fungi was of particular interest because these organisms were not previously shown to produce laccases. 36 refs., 6 figs., 2 tabs.

  17. MANAGEMENT OF ROOT ROT IN AVOCADO TREES

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    SIMONE RODRIGUES DA SILVA

    Full Text Available ABSTRACT Root rot (Phytophthora cinnamomi Rands is one of the most restrictive factors to avocado growing in main producing regions worldwide. In Brazil, scientific reports on the effectiveness of control methods are scarce. The objective of this study was to evaluate the efficiency of gypsum applications and dolomitic limestone to the soil and potassium phosphite sprays in controlling this disease in ‘Hass’ avocado, grown without irrigation. The application of dolomitic limestone or gypsum alone is not effective to recover plants affected by root rot. The application of potassium phosphite, combined or not with dolomitic lime or gypsum enables the partial recovery ‘Hass’ avocado plants affected by the disease.

  18. Rot is a key regulator of Staphylococcus aureus biofilm formation

    Science.gov (United States)

    Mootz, Joe M.; Benson, Meredith A.; Heim, Cortney E.; Crosby, Heidi A.; Kavanaugh, Jeffrey S.; Dunman, Paul M.; Kielian, Tammy; Torres, Victor J.; Horswill, Alexander R.

    2015-01-01

    AUTHOR SUMMARY Staphylococcus aureus is a significant cause of chronic biofilm infections on medical implants. We investigated the biofilm regulatory cascade and discovered that the repressor of toxins (Rot) is part of this pathway. A USA300 community-associated methicillin-resistant S. aureus (CA-MRSA) strain deficient in Rot was unable to form a biofilm using multiple different assays, and we found rot mutants in other strain lineages were also biofilm deficient. By performing a global analysis of transcripts and protein production controlled by Rot, we observed that all the secreted protease genes were upregulated in a rot mutant, and we hypothesized that this regulation could be responsible for the biofilm phenotype. To investigate this question, we determined that Rot bound to the protease promoters, and we observed that activity levels of these enzymes, in particular the cysteine proteases, were increased in a rot mutant. By inactivating these proteases, biofilm capacity was restored to the mutant, demonstrating they are responsible for the biofilm negative phenotype. Finally, we tested the rot mutant in a mouse catheter model of biofilm infection and observed a significant reduction in biofilm burden. Thus S. aureus uses the transcription factor Rot to repress secreted protease levels in order to build a biofilm. PMID:25612137

  19. Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white rot/ brown rot paradigm for wood decay fungi

    Energy Technology Data Exchange (ETDEWEB)

    Riley, Robert; Salamov, Asaf; Brown, Daren W.; Nagy, Laszlo G.; Floudas, Dimitris; Held, Benjamin; Levasseur, Anthony; Lombard, Vincent; Morin, Emmanuelle; Otillar, Robert; Lindquist, Erika; Sun, Hui; LaButti, Kurt; Schmutz, Jeremy; Jabbour, Dina; Luo, Hong; Baker, Scott E.; Pisabarro, Antonio; Walton, Jonathan D.; Blanchette, Robert; Henrissat, Bernard; Martin, Francis; Cullen, Dan; Hibbett, David; Grigoriev, Igor V.

    2014-03-14

    Basidiomycota (basidiomycetes) make up 32percent of the described fungi and include most wood decaying species, as well as pathogens and mutualistic symbionts. Wood-decaying basidiomycetes have typically been classified as either white rot or brown rot, based on the ability (in white rot only) to degrade lignin along with cellulose and hemicellulose. Prior genomic comparisons suggested that the two decay modes can be distinguished based on the presence or absence of ligninolytic class II peroxidases (PODs), as well as the abundance of enzymes acting directly on crystalline cellulose (reduced in brown rot). To assess the generality of the white rot/brown rot classification paradigm we compared the genomes of 33 basidiomycetes, including four newly sequenced wood decayers, and performed phylogenetically-informed Principal Components Analysis (PCA) of a broad range of gene families encoding plant biomass-degrading enzymes. The newly sequenced Botryobasidium botryosum and Jaapia argillacea genomes lack PODs, but possess diverse enzymes acting on crystalline cellulose, and they group close to the model white rot species Phanerochaete chrysosporium in the PCA. Furthermore, laboratory assays showed that both B. botryosum and J. argillacea can degrade all polymeric components of woody plant cell walls, a characteristic of white rot. We also found expansions in reducing polyketide synthase genes specific to the brown rot fungi. Our results suggest a continuum rather than a dichotomy between the white rot and brown rot modes of wood decay. A more nuanced categorization of rot types is needed, based on an improved understanding of the genomics and biochemistry of wood decay.

  20. A genome-wide scan study identifies a single nucleotide substitution in ASIP associated with white versus non-white coat-colour variation in sheep (Ovis aries).

    Science.gov (United States)

    Li, M-H; Tiirikka, T; Kantanen, J

    2014-02-01

    In sheep, coat colour (and pattern) is one of the important traits of great biological, economic and social importance. However, the genetics of sheep coat colour has not yet been fully clarified. We conducted a genome-wide association study of sheep coat colours by genotyping 47 303 single-nucleotide polymorphisms (SNPs) in the Finnsheep population in Finland. We identified 35 SNPs associated with all the coat colours studied, which cover genomic regions encompassing three known pigmentation genes (TYRP1, ASIP and MITF) in sheep. Eighteen of these associations were confirmed in further tests between white versus non-white individuals, but none of the 35 associations were significant in the analysis of only non-white colours. Across the tests, the s66432.1 in ASIP showed significant association (P=4.2 × 10(-11) for all the colours; P=2.3 × 10(-11) for white versus non-white colours) with the variation in coat colours and strong linkage disequilibrium with other significant variants surrounding the ASIP gene. The signals detected around the ASIP gene were explained by differences in white versus non-white alleles. Further, a genome scan for selection for white coat pigmentation identified a strong and striking selection signal spanning ASIP. Our study identified the main candidate gene for the coat colour variation between white and non-white as ASIP, an autosomal gene that has been directly implicated in the pathway regulating melanogenesis. Together with ASIP, the two other newly identified genes (TYRP1 and MITF) in the Finnsheep, bordering associated SNPs, represent a new resource for enriching sheep coat-colour genetics and breeding.

  1. Driving While Non-White: Exploring Traffic Stops and Post-Stop Activities in North Carolina, 2005-2009

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    Cameron D. Lippard

    2011-11-01

    Full Text Available Research has established that Blacks face disproportionate amounts of traffic stops, searches, and arrests by police compared to Whites. However, few studies have ventured past the Black-White dichotomy and considered how Hispanics or other minorities may face the same disparities, especially in places where the Hispanic population has dramatically increased in recent years. Using traffic stop and post-stop data compiled by the North Carolina Department of Justice from 2005 to 2009, this study explored whether Hispanics, Blacks, as well as other racial minorities experienced a higher likelihood of traffic stops, citations, searches, and arrests compared to Whites within sample of city, county, and state law enforcement agencies. We found that generally all racial and ethnic minority groups face higher rates of traffic stops than Whites by almost every law enforcement agency sampled. We also found that rates of post-stop activities including searches, citations, and arrests are higher for all racial and ethnic minority groups examined compared to Whites, especially for Hispanics. Hispanic and non-White disparities in traffic stops also cannot be explained away when controlling for population size, type of law enforcement agency, or the reason stated for the traffic stop (e.g., DWI, speeding, or investigation. More important, however, is that the rate of searches for racial and ethnic minorities did not necessarily match the rates of citations and arrests minorities receive, suggesting that some stops could be racially or ethnically motivated.

  2. Characterization of Fiore Sardo cheese manufactured with the addition of autochthonous cultures.

    Science.gov (United States)

    Pisano, M Barbara; Elisabetta Fadda, M; Deplano, Maura; Corda, Arianna; Casula, Maddalena; Cosentino, Sofia

    2007-08-01

    This work evaluated the effect of adjunct autochthonous cultures on the chemical, microbiological and sensory characteristics of Fiore Sardo cheese during ripening. A total of twelve batches of cheeses were manufactured according to the technical Disciplinary of Fiore Sardo cheese, with and without different combinations of autochthonous strains isolated from the native microflora of artisanal Fiore Sardo. There were no significant differences in the cheese compositional parameters between experimental and control cheeses, but the addition of cultures led to a statistically significant decrease in pH values in experimental cheeses. The evolution of total mesophilic bacteria, total coliforms and lactic acid bacteria were significantly influenced by the addition of autochthonous cultures in most of the experimental cheeses. As for sensory characteristics, all the experimental cheeses reported significantly higher scores especially for shape, texture, interior openings, taste and aftertaste. This study demonstrated the beneficial effect of the addition of selected autochthonous cultures in accelerating the disappearance of undesirable flora and improving the typical sensory characteristics of the cheese, and confirmed the importance of ewes' milk as a source of technologically interesting strains that could be used to ensure a higher quality of artisanal cheese productions.

  3. CRYOPRESERVATION OF RAM SPERM FROM AUTOCHTHONOUS BREEDS DURING A NON-MATING SEASON

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    Milko SABEV

    2007-07-01

    Full Text Available It is possible to collect and successfully cryopreserve ejaculates in a non-mating season from rams of the autochthonous breeds Karakachan, Cooper-red Shumen and Karnobat-local, raised in Bulgaria. Studies are in progress aiming the elaboration of optimal cryoprotective extenders and freezing technology.

  4. A strategy to potentiate Cd phytoremediation by saltmarsh plants - autochthonous bioaugmentation.

    Science.gov (United States)

    Nunes da Silva, Marta; Mucha, Ana P; Rocha, A Cristina; Teixeira, Catarina; Gomes, Carlos R; Almeida, C Marisa R

    2014-02-15

    The recovery of estuarine environments is in need. Phytoremediation could be a valid option to reduce pollution while preserving natural biodiversity. In this work, estuarine sediments colonized by Juncus maritimus or Phragmites australis were spiked with cadmium in the absence and in the presence of an autochthonous microbial consortium resistant to the metal. The aim of this study was to increase the potential for cadmium phytoremediation that these two halophyte plants have shown. Experiments were carried out in greenhouses with an automatic irrigation system that simulated estuarine tidal cycles. After 2 months, Cd concentration in P. australis stems increased up to 7 times when the rhizosphere was inoculated with the microbial consortium. So, P. australis phytoextraction potential was increased through autochthonous bioaugmentation. As for J. maritimus, up to 48% more Cd (total amount) was observed in its belowground tissues after being subjected to autochthonous bioaugmentation. Therefore, the phytostabilization potential of this plant was promoted. For both plants this increase in cadmium uptake did not cause significant signs of toxicity. Therefore, the addition of autochthonous microorganisms resistant to cadmium seems to be a valuable strategy to potentiate phytoremediation of this metal in saltmarshes, being useful for the recovery of moderately impacted estuaries. This will contribute for an effective management of these areas. Research on this topic regarding estuarine ecosystems, especially saltmarshes, is, to our knowledge, inexistent.

  5. Will enhanced turbulence in inland waters result in elevated production of autochthonous dissolved organic matter?

    Science.gov (United States)

    Zhou, Yongqiang; Zhou, Jian; Jeppesen, Erik; Zhang, Yunlin; Qin, Boqiang; Shi, Kun; Tang, Xiangming; Han, Xiaoxia

    2016-02-01

    Biological activity in lakes is strongly influenced by hydrodynamic conditions, not least turbulence intensity; which increases the encounter rate between plankter and nutrient patches. To investigate whether enhanced turbulence in shallow and eutrophic lakes may result in elevated biological production of autochthonous chromophoric dissolved organic matter (CDOM), a combination of field campaigns and mesocosm experiments was used. Parallel factor analysis identified seven components: four protein-like, one microbial humic-like and two terrestrial humic-like components. During our field campaigns, elevated production of autochthonous CDOM was recorded in open water with higher wind speed and wave height than in inner bays, implying that elevated turbulence resulted in increased production of autochthonous CDOM. Confirming the field campaign results, in the mesocosm experiment enhanced turbulence resulted in a remarkably higher microbial humic-like C1 and tryptophan-like C3 (pproduction of autochthonous CDOM. This is consistent with the significantly higher mean concentrations of chlorophyll-a (Chl-a) and dissolved organic carbon (DOC) and the enhanced phytoplanktonic alkaline phosphatase activity (PAPA) recorded in the experimental turbulence groups than in the control group (p<0.05). The C:N ratio (from 3.34 to 25.72 with a mean of 13.13±4.08) for the mesocosm CDOM samples further suggested their probable autochthonous origin. Our results have implications for the understanding of CDOM cycling in shallow aquatic ecosystems influenced by wind-induced waves, in which the enhanced turbulence associated with extreme weather conditions may be further stimulated by the predicted global climate change.

  6. Temporal dynamics and decay of putatively allochthonous and autochthonous viral genotypes in contrasting freshwater lakes.

    Science.gov (United States)

    Hewson, Ian; Barbosa, Jorge G; Brown, Julia M; Donelan, Ryan P; Eaglesham, James B; Eggleston, Erin M; LaBarre, Brenna A

    2012-09-01

    Aquatic viruses play important roles in the biogeochemistry and ecology of lacustrine ecosystems; however, their composition, dynamics, and interactions with viruses of terrestrial origin are less extensively studied. We used a viral shotgun metagenomic approach to elucidate candidate autochthonous (i.e., produced within the lake) and allochthonous (i.e., washed in from other habitats) viral genotypes for a comparative study of their dynamics in lake waters. Based on shotgun metagenomes prepared from catchment soil and freshwater samples from two contrasting lakes (Cayuga Lake and Fayetteville Green Lake), we selected two putatively autochthonous viral genotypes (phycodnaviruses likely infecting algae and cyanomyoviruses likely infecting picocyanobacteria) and two putatively allochthonous viral genotypes (geminiviruses likely infecting terrestrial plants and circoviruses infecting unknown hosts but common in soil libraries) for analysis by genotype-specific quantitative PCR (TaqMan) applied to DNAs from viruses in the viral size fraction of lake plankton, i.e., 0.2 μm > virus > 0.02 μm. The abundance of autochthonous genotypes largely reflected expected host abundance, while the abundance of allochthonous genotypes corresponded with rainfall and storm events in the respective catchments, suggesting that viruses with these genotypes may have been transported to the lake in runoff. The decay rates of allochthonous and autochthonous genotypes, assessed in incubations where all potential hosts were killed, were generally lower (0.13 to 1.50% h(-1)) than those reported for marine virioplankton but similar to those for freshwater virioplankton. Both allochthonous and autochthonous viral genotypes were detected at higher concentrations in subsurface sediments than at the water-sediment interface. Our data indicate that putatively allochthonous viruses are present in lake plankton and sediments, where their temporal dynamics reflect active transport to the lake during

  7. Impact of management strategies in the basal rot, charcoal rots epidemiology and Phaseolus vulgaris L. yield.

    Directory of Open Access Journals (Sweden)

    Ulacio Osorio Dilcia

    2013-02-01

    Full Text Available The effect of chemical, physical, biologycal and cultural strategies individually or combinated were evaluated in the epidemiology of the basal rot (Sclerotium rolfsii, charcoal rot (Macrophomina phaseolina and the Phaseolus vulgaris cv Tacarigua yield at Barinas state from Venezuela. In the experiment, Tebuconazole (Teb was applicated at seed (1 L/Ton and at soil, a los 30 y 60 days after of the sow (1 L/ha; Trichoderma harzianum (Tri was applicated at seed (15 g for each 1.5 k and to 15, 30, 45 y 60 days after of the sow (30 g/10 L of water. On the other hand, soil was solarizated (Sol during 15 days and calcium nitrate (Ca (60 g/10 L of water was applicated each 15 days until 60 days of growth of cultivated plants. Basal rot was registered as far as 42 days after of the sow, showing less of 5.3% in Teb y the combination SolTeb. The hightest incidence of this disease was observed in the treatment Tri with 28.5%, being highter that control (14.5%. Last to 42 days predominated the charcoal rot in the rest of the plants for a total of 100% of incidente in everything the treatments. Nevertheless, Teb showed the hightest yield with 555 k/ha, being different estatistically at treatment TriCa, which showed the lowest yield with 31 k/ha, however, the roots not formed nodules nitrogen uptake in these replications with the fungicide and Ca. It is concluded that S. rolfsii was sensible at action of some of the treatments; but not M. phaseolina; nevertheless, the plants were capables to produce seeds health apparently in treatments in which observed less severity of charcoal rot.

  8. Selection of an autochthonous Saccharomyces strain starter for alcoholic fermentation of Sherry base wines.

    Science.gov (United States)

    Rodríguez-Palero, María Jesús; Fierro-Risco, Jesús; Codón, Antonio C; Benítez, Tahía; Valcárcel, Manuel J

    2013-06-01

    Several indigenous Saccharomyces strains from musts were isolated in the Jerez de la Frontera region, at the end of spontaneous fermentation, in order to select the most suitable autochthonous yeast starter, during the 2007 vintage. Five strains were chosen for their oenological abilities and fermentative kinetics to elaborate a Sherry base wine. The selected autochthonous strains were characterized by molecular methods: electrophoretic karyotype and random amplified polymorphic DNA-polymerase chain reaction (RAPD-PCR) and by physiological parameters: fermentative power, ethanol production, sugar consumption, acidity and volatile compound production, sensory quality, killer phenotype, desiccation, and sulphur dioxide tolerance. Laboratory- and pilot-scale fermentations were conducted with those autochthonous strains. One of them, named J4, was finally selected over all others for industrial fermentations. The J4 strain, which possesses exceptional fermentative properties and oenological qualities, prevails in industrial fermentations, and becomes the principal biological agent responsible for winemaking. Sherry base wine, industrially manufactured by means of the J4 strain, was analyzed, yielding, together with its sensory qualities, final average values of 0.9 g/l sugar content, 13.4 % (v/v) ethanol content and 0.26 g/l volatile acidity content; apart from a high acetaldehyde production, responsible for the distinctive aroma of "Fino". This base wine was selected for "Fino" Sherry elaboration and so it was fortified; it is at present being subjected to biological aging by the so-called "flor" yeasts. The "flor" velum formed so far is very high quality. To the best of our knowledge, this is the first study covering from laboratory to industrial scale of characterization and selection of autochthonous starter intended for alcoholic fermentation in Sherry base wines. Since the 2010 vintage, the indigenous J4 strain is employed to industrially manufacture a

  9. Caciotta della Garfagnana cheese: selection and evaluation of autochthonous mesophilic lactic acid bacteria as starter cultures

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    Domenico Cerri

    2011-04-01

    Full Text Available The aim of this study was to isolate, identify and select, with respect to acidification and proteolytic activities, the autochthonous mesophilic lactic acid bacteria (LAB present in milk and Caciotta della Garfagnana, a cheese produced either with raw or thermised cow’s milk in small dairies and family plants of Garfagnana (Tuscany, to obtain LAB strains with attributes suitable to be employed as starter cultures in this type of cheese, particularly when thermised milk is used to control spoilage microflora. Samples of raw milk, curd and cheese were collected from three representative farmers of the production area and used to isolate autochthonous LAB. Phenotypic and genotypic (species-specific PCR assay identification of isolated LAB was done. Twenty-eight strains of LAB isolated from milk, curd and cheese were screened for acidifying and proteolytic activities. LAB strains with the better attributes were used as mesophilic starter cultures in technological trials: experimental cheeses manufactured with the addition of autochthonous LAB and control cheeses were compared for LAB and pH evolution. Experimental cheeses presented a significant increase in the mesophilic lactic acid microflora up to 14 days of ripening and significantly lower pH values up to seven days of ripening. The use of wild selected mesophilic lactic acid bacteria, together with thermisation of milk, for the Caciotta della Garfagnana looks very promising and could help to both standardise the production and improve quality and traditional characteristics of this type of cheese.

  10. Caciotta della Garfagnana cheese: selection and evaluation of autochthonous mesophilic lactic acid bacteria as starter cultures

    Directory of Open Access Journals (Sweden)

    Barbara Turchi

    2011-05-01

    Full Text Available he aim of this study was to isolate, identify and select, with respect to acidification and proteolytic activities, the autochthonous mesophilic lactic acid bacteria (LAB present in milk and Caciotta della Garfagnana, a cheese produced either with raw or thermised cow’s milk in small dairies and family plants of Garfagnana (Tuscany, to obtain LAB strains with attributes suitable to be employed as starter cultures in this type of cheese, particularly when thermised milk is used to control spoilage microflora. Samples of raw milk, curd and cheese were collected from three representative farmers of the production area and used to isolate autochthonous LAB. Phenotypic and genotypic (species-specific PCR assay identification of isolated LAB was done. Twenty-eight strains of LAB isolated from milk, curd and cheese were screened for acidifying and proteolytic activities. LAB strains with the better attributes were used as mesophilic starter cultures in technological trials: experimental cheeses manufactured with the addition of autochthonous LAB and control cheeses were compared for LAB and pH evolution. Experimental cheeses presented a significant increase in the mesophilic lactic acid microflora up to 14 days of ripening and significantly lower pH values up to seven days of ripening. The use of wild selected mesophilic lactic acid bacteria, together with thermisation of milk, for the Caciotta della Garfagnana looks very promising and could help to both standardise the production and improve quality and traditional characteristics of this type of cheese.

  11. Genetic characterization of autochthonous grapevine cultivars from Eastern Turkey by simple sequence repeats (SSRs

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    Sadiye Peral Eyduran

    2016-01-01

    Full Text Available In this research, two well-recognized standard grape cultivars, Cabernet Sauvignon and Merlot, together with eight historical autochthonous grapevine cultivars from Eastern Anatolia in Turkey, were genetically characterized by using 12 pairs of simple sequence repeat (SSR primers in order to evaluate their genetic diversity and relatedness. All of the used SSR primers produced successful amplifications and revealed DNA polymorphisms, which were subsequently utilized to evaluate the genetic relatedness of the grapevine cultivars. Allele richness was implied by the identification of 69 alleles in 8 autochthonous cultivars with a mean value of 5.75 alleles per locus. The average expected heterozygosity and observed heterozygosity were found to be 0.749 and 0.739, respectively. Taking into account the generated alleles, the highest number was recorded in VVC2C3 and VVS2 loci (nine and eight alleles per locus, respectively, whereas the lowest number was recorded in VrZAG83 (three alleles per locus. Two main clusters were produced by using the unweighted pair-group method with arithmetic mean dendrogram constructed on the basis of the SSR data. Only Cabernet Sauvignon and Merlot cultivars were included in the first cluster. The second cluster involved the rest of the autochthonous cultivars. The results obtained during the study illustrated clearly that SSR markers have verified to be an effective tool for fingerprinting grapevine cultivars and carrying out grapevine biodiversity studies. The obtained data are also meaningful references for grapevine domestication.

  12. Low molecular weight peptides derived from sarcoplasmic proteins produced by an autochthonous starter culture in a beaker sausage model

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    Constanza M. López

    2015-06-01

    Significance: The selection of a specific autochthonous starter culture guarantees the hygiene and typicity of fermented sausages. The identification of new peptides as well as new target proteins by means of peptidomics represents a significant step toward the elucidation of the role of microorganisms in meat proteolysis. Moreover, these peptides may be further used as biomarkers capable to certify the use of the applied autochthonous starter culture described here.

  13. The occurrence of root rot and crown rot of rice in Gilan and Zanjan provinces, Iran.

    Science.gov (United States)

    Saremi, H; Okhovat, S M

    2004-01-01

    Root rot and crown rot of rice is one of the important fungal diseases of rice in Gilan and Zanjan provinces, Iran. During 1999--2002, samples of plant and soil around the roots of infected rice plants were collected and used to identify the causal agent. Root and crown parts were surface sterilized with sodium hypochlorite and then cultured on PDA (potato dextrose agar), PPA (pepton pentacholoritobenzene agar) and CLA (carnation leaf agar) media. Soil samples prepared in water agar were used to isolate the pathogen. The causal agent was identified as Fusarium moniliforme. Colonies were initially white but turned violet to grey late. Microconidia were arranged in chain and macroconidia were cylindrical and long with 3-5 septa. The disease was severe in Zanjan province particularly along Ghezel Ozan river where the infection ranged from 70-80%. Root and crown rot was more prevalent in areas where Champa and Gerdeh were being cultivated continuously. On the other hand, Sadri cultivars had relatively less infection. Persistent cultivation of rice and seed sowing method intensified disease development and caused significant economic losses.

  14. Root rot diseases of sugar beet

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    Jacobsen Barry J.

    2006-01-01

    Full Text Available Root rot diseases of sugar beet caused by Rhizoctonia solani (AG 2-2 IIIB and AG 2-2 IV, R. crocorum, Aphanomyces cochlioides, Phoma betae, Macrophomina phaeseolina, Fusarium oxysporum f.sp. radicis-betae, Pythium aphanidermatum Phytophthora drechsleri, Rhizopus stolonifer, R. arrhizus and Sclerotium rolfsii cause significant losses wherever sugar beets are grown. However, not all these soil-borne pathogens have been reported in all sugar beet production areas. Losses include reduced harvestable tonnage and reduced white sugar recovery. Many of these pathogens also cause post harvest losses in storage piles. Control for diseases caused by these pathogens include disease resistant cultivars, avoidance of stresses, cultural practices such as water management and the use of fungicides.

  15. Etiology and Epidemiological Conditions Promoting Fusarium Root Rot in Sweetpotato.

    Science.gov (United States)

    Scruggs, A C; Quesada-Ocampo, L M

    2016-08-01

    Sweetpotato production in the United States is limited by several postharvest diseases, and one of the most common is Fusarium root rot. Although Fusarium solani is believed to be the primary causal agent of disease, numerous other Fusarium spp. have been reported to infect sweetpotato. However, the diversity of Fusarium spp. infecting sweetpotato in North Carolina is unknown. In addition, the lack of labeled and effective fungicides for control of Fusarium root rot in sweetpotato creates the need for integrated strategies to control disease. Nonetheless, epidemiological factors that promote Fusarium root rot in sweetpotato remain unexplored. A survey of Fusarium spp. infecting sweetpotato in North Carolina identified six species contributing to disease, with F. solani as the primary causal agent. The effects of storage temperature (13, 18, 23, 29, and 35°C), relative humidity (80, 90, and 100%), and initial inoculum level (3-, 5-, and 7-mm-diameter mycelia plug) were examined for progression of Fusarium root rot caused by F. solani and F. proliferatum on 'Covington' sweetpotato. Fusarium root rot was significantly reduced (P Fusarium spp. revealed the production of fumonisin B1 by F. proliferatum when infecting sweetpotato. This study is a step toward characterizing the etiology and epidemiology of Fusarium root rot in sweetpotato, which allows for improved disease management recommendations to limit postharvest losses to this disease.

  16. Safety improvement and preservation of typical sensory qualities of traditional dry fermented sausages using autochthonous starter cultures.

    Science.gov (United States)

    Talon, Régine; Leroy, Sabine; Lebert, Isabelle; Giammarinaro, Philippe; Chacornac, Jean-Paul; Latorre-Moratalla, Mariluz; Vidal-Carou, Carmen; Zanardi, Emanuela; Conter, Mauro; Lebecque, Annick

    2008-08-15

    Traditional dry fermented sausages are manufactured without addition of starter cultures in small-scale processing units, their fermentation relying on indigenous microflora. Characterisation and control of these specific bacteria are essential for the sensory quality and the safety of the sausages. The aim of this study was to develop an autochthonous starter culture that improves safety while preserving the typical sensory characteristics of traditional sausages. An autochthonous starter composed of Lactobacillus sakei, Staphylococcus equorum and Staphylococcus succinus isolated from a traditional fermented sausage was developed. These strains were tested for their susceptibility to antibiotics and their production of biogenic amines. This starter was evaluated in situ at the French traditional processing unit where the strains had been isolated. Effects of the autochthonous starter were assessed by analysing the microbial, physico-chemical, biochemical and sensory characteristics of the sausages. Inoculation with the chosen species was confirmed using known species-specific PCR assays for L. sakei and S. equorum and a species-specific PCR assay developed in this study for S. succinus. Strains were monitored by pulse-field gel electrophoresis typing. Addition of autochthonous microbial starter cultures improved safety compared with the traditional natural fermentation of sausages, by inhibiting the pathogen Listeria monocytogenes, decreasing the level of biogenic amines and by limiting fatty acid and cholesterol oxidation. Moreover, autochthonous starter did not affect the typical sensory quality of the traditional sausages. This is the first time to our knowledge that selection, development and validation in situ of autochthonous starter cultures have been carried out, and also the first time that S. equorum together with S. succinus have been used as starter cultures for meat fermentation. Use of autochthonous starter cultures is an effective tool for limiting

  17. Comparative studies on thermochemical characterization of corn stover pretreated by white-rot and brown-rot fungi.

    Science.gov (United States)

    Zeng, Yelin; Yang, Xuewei; Yu, Hongbo; Zhang, Xiaoyu; Ma, Fuying

    2011-09-28

    The effects of white-rot and brown-rot fungal pretreatment on the chemical composition and thermochemical conversion of corn stover were investigated. Fungus-pretreated corn stover was analyzed by Fourier transform infrared spectroscopy and X-ray diffraction analysis to characterize the changes in chemical composition. Differences in thermochemical conversion of corn stover after fungal pretreatment were investigated using thermogravimetric and pyrolysis analysis. The results indicated that the white-rot fungus Irpex lacteus CD2 has great lignin-degrading ability, whereas the brown-rot fungus Fomitopsis sp. IMER2 preferentially degrades the amorphous regions of the cellulose. The biopretreatment favors thermal decomposition of corn stover. The weight loss of IMER2-treated acid detergent fiber became greater, and the oil yield increased from 32.7 to 50.8%. After CD2 biopretreatment, 58% weight loss of acid detergent lignin was achieved and the oil yield increased from 16.8 to 26.8%.

  18. QTLs for Resistance to Major Rice Diseases Exacerbated by Global Warming: Brown Spot, Bacterial Seedling Rot, and Bacterial Grain Rot.

    Science.gov (United States)

    Mizobuchi, Ritsuko; Fukuoka, Shuichi; Tsushima, Seiya; Yano, Masahiro; Sato, Hiroyuki

    2016-12-01

    In rice (Oryza sativa L.), damage from diseases such as brown spot, caused by Bipolaris oryzae, and bacterial seedling rot and bacterial grain rot, caused by Burkholderia glumae, has increased under global warming because the optimal temperature ranges for growth of these pathogens are relatively high (around 30 °C). Therefore, the need for cultivars carrying genes for resistance to these diseases is increasing to ensure sustainable rice production. In contrast to the situation for other important rice diseases such as blast and bacterial blight, no genes for complete resistance to brown spot, bacterial seedling rot or bacterial grain rot have yet been discovered. Thus, rice breeders have to use partial resistance, which is largely influenced by environmental conditions. Recent progress in molecular genetics and improvement of evaluation methods for disease resistance have facilitated detection of quantitative trait loci (QTLs) associated with resistance. In this review, we summarize the results of worldwide screening for cultivars with resistance to brown spot, bacterial seedling rot and bacterial grain rot and we discuss the identification of QTLs conferring resistance to these diseases in order to provide useful information for rice breeding programs.

  19. Development of autochthonous microbial consortia for enhanced phytoremediation of salt-marsh sediments contaminated with cadmium

    Energy Technology Data Exchange (ETDEWEB)

    Teixeira, Catarina [Centro Interdisciplinar de Investigação Marinha e Ambiental (CIIMAR/CIMAR), Universidade do Porto, Rua dos Bragas, 289, 4050-123 Porto (Portugal); Laboratório de Hidrobiologia e Ecologia, Instituto de Ciências Biomédicas Abel Salazar (ICBAS), Universidade do Porto, Rua Jorge Viterbo Ferreira, 228, 4050-313 Porto (Portugal); Almeida, C. Marisa R.; Nunes da Silva, Marta [Centro Interdisciplinar de Investigação Marinha e Ambiental (CIIMAR/CIMAR), Universidade do Porto, Rua dos Bragas, 289, 4050-123 Porto (Portugal); Bordalo, Adriano A. [Centro Interdisciplinar de Investigação Marinha e Ambiental (CIIMAR/CIMAR), Universidade do Porto, Rua dos Bragas, 289, 4050-123 Porto (Portugal); Laboratório de Hidrobiologia e Ecologia, Instituto de Ciências Biomédicas Abel Salazar (ICBAS), Universidade do Porto, Rua Jorge Viterbo Ferreira, 228, 4050-313 Porto (Portugal); Mucha, Ana P., E-mail: amucha@ciimar.up.pt [Centro Interdisciplinar de Investigação Marinha e Ambiental (CIIMAR/CIMAR), Universidade do Porto, Rua dos Bragas, 289, 4050-123 Porto (Portugal)

    2014-09-15

    Microbial assisted phytoremediation is a promising, though yet poorly explored, new remediation technique. The aim of this study was to develop autochthonous microbial consortia resistant to cadmium that could enhance phytoremediation of salt-marsh sediments contaminated with this metal. The microbial consortia were selectively enriched from rhizosediments colonized by Juncus maritimus and Phragmites australis. The obtained consortia presented similar microbial abundance but a fairly different community structure, showing that the microbial community was a function of the sediment from which the consortia were enriched. The effect of the bioaugmentation with the developed consortia on cadmium uptake, and the microbial community structure associated to the different sediments were assessed using a microcosm experiment. Our results showed that the addition of the cadmium resistant microbial consortia increased J. maritimus metal phytostabilization capacity. On the other hand, in P. australis, microbial consortia amendment promoted metal phytoextraction. The addition of the consortia did not alter the bacterial structure present in the sediments at the end of the experiments. This study provides new evidences that the development of autochthonous microbial consortia for enhanced phytoremediation of salt-marsh sediments contaminated with cadmium might be a simple, efficient, and environmental friendly remediation procedure. Capsule abstract: Development of autochthonous microbial consortia resistant to cadmium that enhanced phytoremediation by salt-marsh plants, without a long term effect on sediment bacterial diversity. - Highlights: • Cd resistant microbial consortia were developed and applied to salt-marsh sediments. • In Phragmites australis the consortia amendment promoted metal phytoextraction. • The consortia addition increased Juncus maritimus phytostabilization capacity. • No long term changes on the rhizosediment bacterial structure were observed.

  20. Study of features of the biochemical composition of red vine leaves of autochthonous varieties in Russia

    Directory of Open Access Journals (Sweden)

    Oganesyants Lev

    2015-01-01

    Full Text Available One of the fields of processing industries’ activities is the use of secondary resources. The use the vegetative parts of grape plants may become an important component in solving this task. Such vegetative parts, first of all, include red grape leaves, which provide a large reserve of antioxidants and other biologically useful substances. The Russian Research Institute of Brewing and Wine Industry has carried out the detailed study of the features of the biochemical composition of red vine leaves of autochthonous varieties cultivated in the Rostov region of Russia. Cold winters are considered to be the major stress for the grape plants. Under these conditions, leaves accumulate large amount of biologically active substances, including trans-resveratrol, which provide significant advantage compared with the harvest from grapes cultivated in areas where the plants are not protected during winter. Comparative studies on the biochemical composition of red vine leaves of autochthonous and European varieties were conducted, including on the use of bioassay systems in vitro. It was found that extracts of red vine leaves of autochthonous varieties have a marked effect on the rate of glutathione reductase and pyruvate kinase reactions that are demonstrating their angioprotective and energizing properties. The increase in the rate of the catalase reaction indicates the manifestation of antioxidant properties. The technology of CO2 – and highly concentrated hydrophilic extracts production from red vine leaves that preserves biologically active compounds to the maximum extent possible. The extracts are used for the manufacture of soft drinks that have the venomotor action and may be applied in the process of the manufacture of fat products with extended shelf life, as well as the main raw material for the preparations with the pronounced angioprotective effect.

  1. [Clinical study of prejudicing autochthonous speech act (thought)--acceleration of the activity in the remission process of schizophrenia].

    Science.gov (United States)

    Kato, S

    1997-01-01

    Schizophrenics occasionally experience guilty feeling at having insulted someone such as having said "You fool" or "Die" to a new acquaintance. They also experience guilty feeling from autochthonous thought, a feeling of having prejudiced his neighbour. This latter autochthonous thought is considered to be closely related with the former prejudicing speech act. The author would provisionally call these phenomenons of prejudice, prejudicing autochthonous speech act (or prejudicing autochthonous thought), particularly in the case in which the object of prejudice is an intimate real other, or a co-presenting other. Based on his own nine cases, the author has first described the clinical characteristics of this symptom, and then developed psychopathological considerations to draw a attention to the therapeutic importance of this symptom. On the symptomatological ground, the prejudicing autochthonous speech act (thought) belongs to psychomotor verbal hallucinations (J. Séglas), more precisely to the soliloquy type of this hallucination. On the clinical ground, this symptom is likely to follow auditory hallucination caused by an acute state or that of recovery period from this state. Furthermore, it is not infrequent that general improvement as well as remission follow the appearance of this symptom. This symptomatological change of the center of gravity, that is, the gradual transition from auditory hallucination to prejudicing autochthonous speech act (thought) is considered to correspond to a change of the patient's position in relation to others. This position, once experienced passively, is now experienced actively. In other words, the patient, coming out of an acute psychotic state and opening to an intersubjective world, is confronted with a high tension relationship with others. The prejudicing autochthonous speech act (thought) appears in this situation, to restore the patient's own subjectivity in coping with the pressure of real others. In this case, this

  2. Impact of autochthonous music on the creation of tourist destination image

    Directory of Open Access Journals (Sweden)

    Željko Blagus

    2010-06-01

    Full Text Available This paper tries to determine to what extent autochthonous music may contribute to the creation of the image of a tourist destination. In other words, it aims at demostrating how the Croatian Međimurje County may become recognizable as a tourist destination on the basis of its ethnographic heritage, which exists even today in different ways. The first part of the paper deals with the role of image in the choice of destination and defines the term “destination image”. A particular emphasis is placed on the analysis of the impact of autochthonous music on the image of the Međimurje County. It proves the thesis that autochthonous music plays an important role in the presentation and dissemination of the recognizable image of Međimurje. As shown in this paper, the music of Međimurje is a resource characterized by dynamism, change and adaptability. It is also a source of inspiration of numerous musicians and, thanks to its uniqueness in terms of authenticity, representativeness or rarity, it becomes a quality symbol of the environment in which it came to be. In this sense, the paper offers an insight into the way in which the music of Međimurje might be used to improve the understanding and acceptance of certain communication content by making the message clearer and easier to understand. It is evident that the market evaluated the autochthonous music of Međimurje in the past and will continue to evaluate it to an increasing extent in the future, so claims about its incompatibility with commercialism and utilitarianism may only be accepted conditionally. The second part of the paper includes a description of the methodological frame of the field research that has been conducted as well as a report on its results. In this way, the analysis of the role which the music of Međimurje plays in the creation of image acquires its concrete meaning, since the results of the research can be interpreted with regard to their assumptions and their

  3. Repression of hla by rot is dependent on sae in Staphylococcus aureus.

    Science.gov (United States)

    Li, Dongmei; Cheung, Ambrose

    2008-03-01

    The regulatory locus sae is a two-component system in Staphylococcus aureus that regulates many important virulence factors, including alpha-toxin (encoded by hla) at the transcriptional level. The SarA homologs Rot and SarT were previously shown to be repressors of hla in selected S. aureus backgrounds. To delineate the interaction of rot and sae and the contribution of sarT to hla expression, an assortment of rot and sae isogenic single mutants, a rot sae double mutant, and a rot sae sarT markerless triple mutant were constructed from wild-type strain COL. Using Northern blot analysis and transcriptional reporter gene green fluorescent protein, fusion, and phenotypic assays, we found that the repression of hla by rot is dependent on sae. A rot sae sarT triple mutant was not able to rescue the hla defect of the rot sae double mutant. Among the three sae promoters, the distal sae P3 promoter is the strongest in vitro. Interestingly, the sae P3 promoter activities correlate with hla expression in rot, rot sae, and rot sae sarT mutants of COL. Transcriptional study has also shown that rot repressed sae, especially at the sae P3 promoter. Collectively, our data implicated the importance of sae in the rot-mediated repression of hla in S. aureus.

  4. Antibiotic susceptibility and antimicrobial activity of autochthonous starter cultures as safety parameters for fresh cheese production

    Directory of Open Access Journals (Sweden)

    Dora Bučan

    2013-11-01

    Full Text Available The antibiotic susceptibility and antimicrobial activity, as food safety parameters important for application of autochthonous lactic acid bacteria (LAB, that previously satisfied technological criteria for functional starter cultures in fresh cheese production were examined. Soluble whole cell protein patterns of autochthonous LAB strains from fresh cheese, obtained by SDS-PAGE, revealed the presence of two predominant strains, which were identified as Lactobacillus fermentum A8 and Enterococcus faecium A7. These strains were not resistant and shown susceptibility to antibiotics: ampicillin, bacitracin, penicillin G, azithromycin, chloramphenicol, clarithromycin, clindamycin, spiramycin, tetracycline, streptomycin, neomycin, gentamicin, erythromycin, rifampicin and novobiocin. Lb. fermentum A8 strain displayed phenotypic resistance to vancomycin, but this resistance is intrinsic, not transferable and it is acceptable from the safety aspect. The capacity of Lb. fermentum A8 and Ec. faecium A7 to inhibit growth of test-microorganisms Listeria monocytogenes ATCC 11911, Escherichia coli 3014, Salmonella enterica serovar Typhimurium FP1 and Staphylococcus aureus 3048, was also analysed. According to obtained results, Lb. fermentum A8 and Ec. faecium A7 are safe from the aspect of spreading antibiotic resistance and could be useful as bioprotective cultures that inhibit common bacterial food contaminants, including L. monocytogenes.

  5. Combined Treatment Effects of Radiation and Immunotherapy: Studies in an Autochthonous Prostate Cancer Model

    Energy Technology Data Exchange (ETDEWEB)

    Wada, Satoshi [Department of Oncology, James Buchanan Brady Urological Institute, Johns Hopkins Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland (United States); Harris, Timothy J.; Tryggestad, Erik [Department of Radiation Oncology and Molecular Radiation Sciences, James Buchanan Brady Urological Institute, Johns Hopkins Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland (United States); Yoshimura, Kiyoshi [Department of Oncology, James Buchanan Brady Urological Institute, Johns Hopkins Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland (United States); Zeng, Jing [Department of Radiation Oncology and Molecular Radiation Sciences, James Buchanan Brady Urological Institute, Johns Hopkins Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland (United States); Yen, Hung-Rong; Getnet, Derese; Grosso, Joseph F.; Bruno, Tullia C. [Department of Oncology, James Buchanan Brady Urological Institute, Johns Hopkins Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland (United States); De Marzo, Angelo M. [Department of Pathology, James Buchanan Brady Urological Institute, Johns Hopkins Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland (United States); Department of Urology, James Buchanan Brady Urological Institute, Johns Hopkins Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland (United States); and others

    2013-11-15

    Purpose: To optimize the combination of ionizing radiation and cellular immunotherapy using a preclinical autochthonous model of prostate cancer. Methods and Materials: Transgenic mice expressing a model antigen under a prostate-specific promoter were treated using a platform that integrates cone-beam CT imaging with 3-dimensional conformal therapy. Using this technology we investigated the immunologic and therapeutic effects of combining ionizing radiation with granulocyte/macrophage colony-stimulating factor-secreting cellular immunotherapy for prostate cancer in mice bearing autochthonous prostate tumors. Results: The combination of ionizing radiation and immunotherapy resulted in a significant decrease in pathologic tumor grade and gross tumor bulk that was not evident with either single-modality therapy. Furthermore, combinatorial therapy resulted in improved overall survival in a preventive metastasis model and in the setting of established micrometastases. Mechanistically, combined therapy resulted in an increase of the ratio of effector-to-regulatory T cells for both CD4 and CD8 tumor-infiltrating lymphocytes. Conclusions: Our preclinical model establishes a potential role for the use of combined radiation-immunotherapy in locally advanced prostate cancer, which warrants further exploration in a clinical setting.

  6. Autochthonous Hepatitis E Virus Infection in Europe: A Matter of Concern for Public Health?

    Science.gov (United States)

    Echevarría, José-Manuel

    2014-03-01

    Human hepatitis E virus (HHEV) is the proposed name for a diverse group of RNA viruses from the family Hepeviridae that cause acute hepatitis among humans. Waterborne strains are regularly imported into Europe by international travelers, and virus transmission of zoonotic strains via contaminated aliments is involved in autochthonous cases. Therefore, in Europe, hepatitis E displays a unique dual character, having features of both imported and autochthonous infections. Environmental involvement of waterborne and zoonotic diseases puts alimentary safety at risk. In addition, it may lead to serious health problems derived from persistent infection among patients with immune impairment due to organ transplant, cancer, or human immunodeficiency virus infection. Although the European health authorities know at present that HHEV represents a problem worthy of consideration, the actual incidence of the disease in Europe is unknown, and attempts to ascertain the prevalence of the infection is hampered by unresolved technical issues. In order to determine the burden of hepatitis E in Europe, the World Health Organization Regional Office and the European Centre for Disease Prevention and Control should pay specific attention to hepatitis E, and research efforts in the continent should be transnational and collaborative. Development of a specific European network for hepatitis E would help to achieve these goals.

  7. Genetic diversity and variability in two Italian autochthonous donkey genetic types assessed by microsatellite markers

    Directory of Open Access Journals (Sweden)

    Donato Matassino

    2014-01-01

    Full Text Available Since 13rd century, Italian domestic autochthonous donkey population has been characterised by Mediterranean grey mousy cruciate ancestral phenotype, currently typical of Amiata donkey (AD genetic type. This phenotype persisted up to the 16th century when a marked introduction of Hispanic and French big sized and dark bay or darkish coloured sires occurred. In the context of a safeguard programme of Latial Equide resources, the aim of this research was to evaluate the genetic diversity and similarity between the AD breed and an autochthonous donkey population native from Lazio, the Viterbese donkey (VD, using molecular markers. A total of 135 animals (50 AD and 85 VD were genetically characterised by using 16 short tandem repeat markers. A high genetic differentiation between populations (FST=0.158; P<0.01 and a low betweenbreeds genetic similarity (0.233±0.085 were observed. Correspondence analysis, the result of STRUCTURE software analysis and analysis of molecular variance would seem to indicate genetically different entities as well. It would be desirable to increase the number of comparison with other breeds to better understand the origin of VD. Moreover, results obtained in this study suggest that the loss of genetic variation observed in VD could mainly derive from unnoticed sub-population structuring (Wahlund effect, rather than to other factors such as inbreeding, null alleles or selection influence.

  8. Jasmonic acid and salicylic acid inhibit growth of three sugarbeet storage rot pathogens

    Science.gov (United States)

    Storage rots contribute to postharvest losses by consuming sucrose and increasing carbohydrate impurities that increase sugar loss to molasses during processing. They also increase root respiration rate, which causes additional sucrose loss and contributes to pile warming. Currently, storage rots ...

  9. Control of storage rot by induction of plant defense mechanisms using jasmonic acid and salicylic acid

    Science.gov (United States)

    Storage rots contribute to sugarbeet postharvest losses by consuming sucrose and producing carbohydrate impurities that increase sugar loss to molasses. Presently, storage rots are controlled by cooling storage piles. This method of control, however, requires favorable weather conditions for stora...

  10. DEGRADATION OF TEXTILE DYES BY WHITE ROT BASIDIOMYCETES

    Directory of Open Access Journals (Sweden)

    B.P. PARMAR, P.N. MERVANA B.R.M. VYAS*

    2014-12-01

    Full Text Available ABSTRACT: Dyes released by the textile industries pose a threat to environmental quality. Ligninolytic white-rot basidiomycetes can effectively degrade colored effluents and conventional dyes. White-rot fungi produce various isoforms of extracellular oxidases including laccase, Mn peroxidase and lignin peroxidase (LiP, which are involved in the degradation of lignin in their natural lignocellulosic substrates.  The textile industry, by far the most avid user of synthetic dyes, is in need of eco-efficient solutions for its colored effluents. White rot basidiomycetous fungi comprise the only group of organisms known to completely degrade lignin. Ligninolytic enzymes have potential applications in a large number of fields, including the chemical, fuel, food, agricultural, paper, textile, cosmetic industrial sectors and more. This ligninolytic system of white-rot fungi is also directly involved in the degradation of various xenobiotic compounds apart from textile dyes. Their capacities to remove xenobiotic substances make them a useful tool for bioremediation purposes. This paper reviews involvement of ligninolytic enzymes of white rot basidiomycetes in the degradation of textiles dyes and xenobiotic compounds for their industrial and biotechnological applications.

  11. Reaction of Cauliflower Genotypes to Black Rot of Crucifers

    Science.gov (United States)

    da Silva, Lincon Rafael; da Silva, Renan César Dias; Cardoso, Atalita Francis; de Mello Pelá, Gláucia; Carvalho, Daniel Diego Costa

    2015-01-01

    This study aimed to evaluate six cauliflower genotypes regarding their resistance to black rot and their production performance. To do so, it was conducted two field experiments in Ipameri, Goiás, Brazil, in 2012 and 2013. It was used a randomized block design, with four replications (total of 24 plots). Each plot consisted of three planting lines 2.5 m long (six plants/line), spaced 1.0 m apart, for a total area of 7.5 m2. Evaluations of black rot severity were performed at 45 days after transplanting, this is, 75 days after sowing (DAS), and yield evaluations at 90 to 105 DAS. The Verona 184 genotype was the most resistant to black rot, showing 1.87 and 2.25% of leaf area covered by black rot symptom (LACBRS) in 2012 and 2013. However, it was not among the most productive materials. The yield of the genotypes varied between 15.14 and 25.83 t/ha in both years, Lisvera F1 (21.78 and 24.60 t/ha) and Cindy (19.95 and 23.56 t/ha) being the most productive. However, Lisvera F1 showed 6.37 and 9.37% of LACBRS and Cindy showed 14.25 and 14.87% of LACBRS in 2012 and 2013, being both considered as tolerant to black rot. PMID:26060437

  12. Reaction of Cauliflower Genotypes to Black Rot of Crucifers

    Directory of Open Access Journals (Sweden)

    Lincon Rafael da Silva

    2015-06-01

    Full Text Available This study aimed to evaluate six cauliflower genotypes regarding their resistance to black rot and their production performance. To do so, it was conducted two field experiments in Ipameri, Goiás, Brazil, in 2012 and 2013. It was used a randomized block design, with four replications (total of 24 plots. Each plot consisted of three planting lines 2.5 m long (six plants/line, spaced 1.0 m apart, for a total area of 7.5 m². Evaluations of black rot severity were performed at 45 days after transplanting, this is, 75 days after sowing (DAS, and yield evaluations at 90 to 105 DAS. The Verona 184 genotype was the most resistant to black rot, showing 1.87 and 2.25% of leaf area covered by black rot symptom (LACBRS in 2012 and 2013. However, it was not among the most productive materials. The yield of the genotypes varied between 15.14 and 25.83 t/ha in both years, Lisvera F1 (21.78 and 24.60 t/ha and Cindy (19.95 and 23.56 t/ha being the most productive. However, Lisvera F1 showed 6.37 and 9.37% of LACBRS and Cindy showed 14.25 and 14.87% of LACBRS in 2012 and 2013, being both considered as tolerant to black rot.

  13. Effect of autochthonous lactic acid bacteria starters on health-promoting and sensory properties of tomato juices.

    Science.gov (United States)

    Di Cagno, Raffaella; Surico, Rosalinda F; Paradiso, Annalisa; De Angelis, Maria; Salmon, Jean-Christophe; Buchin, Solange; De Gara, Laura; Gobbetti, Marco

    2009-01-15

    Strains of Lactobacillus plantarum, Weissella cibaria/confusa, Lactobacillus brevis, Pediococcus pentosaceous, Lactobacillus sp. and Enterococcus faecium/faecalis were identified from raw tomatoes by Biolog System, partial 16S rRNA gene sequence and subjected to typing by Random Amplified Polymorphic DNA-Polymerase Chain Reaction (RAPD-PCR) analysis. Ten autochthonous strains were singly used to ferment tomato juice (TJ) via a protocol which included fermentation at 25 degrees C for 17 h and further storage at 4 degrees C for 40 days. Unstarted TJ and TJ fermented with an allochthonous strain of L. plantarum were used as the controls. All autochthonous strains grew well in TJ reaching cell densities ca. 10,000 and 10 times higher than unstarted TJ and TJ fermented with the allochthonous strain. Viscosity of TJs fermented with autochthonous strains was generally the highest, especially when started with W. cibaria/confusa which synthesized exo-polysaccharides. Overall, unstarted TJ and TJ fermented with the allochthonous strain showed marked decreases of ascorbic acid (ASC), glutathione (GSH) and total antioxidant activity (TTA) during storage. On the contrary, several TJs fermented with autochthonous strains, especially with L. plantarum POM1 and POM 35, maintained elevated values of ASC, GSH and TAA. The variation of color indexes mirrored the above behavior. TJs fermented with the above two autochthonous strains were compared to controls based on volatile components through Purge and Trap or Solid Phase Microextraction Gas Chromatography-Mass Spectrometry (PT or SPME-GC/MS) analysis. As shown by Principal Component Analysis a large number of volatiles belonging to various chemical classes markedly differentiated TJs fermented with autochthonous strains with respect to controls.

  14. Biological Control of Phacidiopycnis Rot in ‘d’Anjou’ Pears

    Science.gov (United States)

    Phacidiopycnis rot, caused by Phacidiopycnis piri, is a recently reported postharvest fruit rot disease of pears (Pyrus) in the U.S. and a major disease of ‘d’Anjou’ pears grown in Washington State. Phacidiopycnis rot can originate from infection of wounds on the fruit. In this study, two biocontrol...

  15. Genetic variation between Phytophthora cactorum isolates differing in their ability to cause crown rot in strawberry

    NARCIS (Netherlands)

    Eikemo, H.; Klemsdal, S.S.; Riisberg, I.; Bonants, P.J.M.; Stensvand, A.; Tronsmo, A.M.

    2004-01-01

    Analysis of 44 isolates of Phytophthora cactorum, isolated from strawberry and other hosts, by AFLP showed that the crown rot pathotype is different from leather rot isolates and from P. cactorum isolated from other hosts. 16 of 23 crown rot isolates, including isolates from Europe, Japan, Australia

  16. Black rot of cabbage in The Netherlands: studies on spatial and temporal development.

    NARCIS (Netherlands)

    Kocks, C.G.

    1998-01-01

    Black rot in cabbage is caused by the bacterium Xanthomonas campestris pv. campestris . An exploratory survey at farm level suggested that major aspects contributing to black rot development are cultivar, initial inoculum, refuse management, origin of transplants, and seed quality. Black rot develop

  17. The use of white-rot fungi as active biofilters

    Energy Technology Data Exchange (ETDEWEB)

    Braun-Luellemann, A.; Johannes, C.; Majcherczyk, A.; Huettermann, A. [Univ. Goettingen (Germany). Forstbotanisches Inst.

    1995-12-31

    White-rot fungi, growing on lignocellulosic substrates, have been successfully used as active organisms in biofilters. Filters using these fungi have a very high biological active surface area, allowing for high degrees of retention, a comparatively low pressure drop, and a high physical stability. The unspecific action of the extracellular enzymes of the white-rot fungi allows for the degradation of a wide variety of substances by the same organism. Degradation of several compounds in the gas phase by the white-rot fungi Trametes versicolor, Pleurotus ostreatus, Bjerkandera adusta, and Phanerochaete chrysosporium was tested. Among the aromatic solvents, styrene was the compound that was most readily degraded, followed by ethylbenzene, xylenes, and toluene. Tetrahydrofuran and dichloromethane were also degraded, whereas dioxane could not be attacked by fungi under the conditions used. Acrylonitrile and aniline were degraded very well, whereas pyridine was resistant to degradation. The process for removing styrene is now in the scaling-up stage.

  18. Decay threshold of acetylated rattan (Calamus manan) against soft rot

    Institute of Scientific and Technical Information of China (English)

    Norul Hisham Hamid; Mike Hale

    2013-01-01

    We investigated the resistance of acetylated rattan against soft rot and other soil inhabiting micro-organisms in comparison with wood of beech and Scots pine.Calamus manan of 10 and 13 years old under rubber tree canopy was acetylated to different levels by reaction times (0.25 to 30 hours) and was tested for soft rot decay for 32 weeks.Acetylated rattan at decay protection thresholds of 15.4% and 16.2% weight gain (WG) were fully protected,as shown by both weight loss and strength loss criteria.The static bending properties of untreated rattan decayed by soft rot were significantly lower than for acetylated rattan.

  19. BIOCHEMICAL PULPING OF REED PRETREATED BY WHITE ROT FUNGI

    Institute of Scientific and Technical Information of China (English)

    ShiyuFu; AniwarApiz; HuaiyuZhan

    2004-01-01

    The Soda-AQ pulps were made from reed pretreated by white rot fungi Panus conchatus. Cyathus stercoreus and Pleurotus florida respectively. It was found that kappa number decreased and the brightness increased for Soda-AQ pulps from the reed treated by Pleurotus florida and Panus conchatus, but it was reverse for the pulp from reed treated by Cyathus stercoreus. The result indicated that white rot fungi Pleurotus .florida and Panus conchatus were selective to degrade lignin inreed, which were good for biopulping, but Cyathus stercoreus was preferential to degrade cellulose, which was not good for biopulping.

  20. BIOCHEMICAL PULPING OF REED PRETREATED BY WHITE ROT FUNGI

    Institute of Scientific and Technical Information of China (English)

    Shiyu Fu; Aniwar Apiz; Huaiyu Zhan

    2004-01-01

    The Soda-AQ pulps were made from reed pretreated by white rot fungi Panus conchatus,Cyathus stercoreus and Pleurotus florida respectively. It was found that kappa number decreased and the brightness increased for Soda-AQ pulps from the reed treated by Pleurotus florida and Panus conchatus, but it was reverse for the pulp from reed treated by Cyathus stercoreus. The result indicated that white rot fungi Pleurotus florida and Panus conchatus were selective to degrade lignin in reed, which were good for biopulping, but Cyathus stercoreus was preferential to degrade cellulose,which was not good for biopulping.

  1. Identification of soil-borne pathogens in a common bean root rot nursery in Isabela, Puerto Rico

    Science.gov (United States)

    Limited research has been completed on the root rot complex of the common bean (Phaseolus vulgaris L.) in the Caribbean, while yield losses of over 50% due to root rot disease have been reported worldwide. In this study, the predominant root rot pathogens in a 40-year old common bean root rot nurser...

  2. Repression of hla by rot Is Dependent on sae in Staphylococcus aureus▿

    OpenAIRE

    Li, Dongmei; Cheung, Ambrose

    2008-01-01

    The regulatory locus sae is a two-component system in Staphylococcus aureus that regulates many important virulence factors, including alpha-toxin (encoded by hla) at the transcriptional level. The SarA homologs Rot and SarT were previously shown to be repressors of hla in selected S. aureus backgrounds. To delineate the interaction of rot and sae and the contribution of sarT to hla expression, an assortment of rot and sae isogenic single mutants, a rot sae double mutant, and a rot sae sarT m...

  3. Mercury dilution by autochthonous organic matter in a fertilized mangrove wetland.

    Science.gov (United States)

    Machado, Wilson; Sanders, Christian J; Santos, Isaac R; Sanders, Luciana M; Silva-Filho, Emmanoel V; Luiz-Silva, Wanilson

    2016-06-01

    A dated sediment core from a highly-fertilized mangrove wetland located in Cubatão (SE Brazil) presented a negative correlation between mercury (Hg) and organic carbon contents. This is an unusual result for a metal with well-known affinity to organic matter. A dilution of Hg concentrations by autochthonous organic matter explained this observation, as revealed by carbon stable isotopes signatures (δ(13)C). Mercury dilution by the predominant mangrove-derived organic matter counterbalanced the positive influences of algal-derived organic matter and clay contents on Hg levels, suggesting that deleterious effects of Hg may be attenuated. Considering the current paradigm on the positive effect of organic matter on Hg concentrations in coastal sediments and the expected increase in mangrove organic matter burial due to natural and anthropogenic stimulations of primary production, predictions on the influences of organic matter on Hg accumulation in mangrove wetlands deserve caution.

  4. INFLUENCE OF AUTOCHTHONOUS SACCHAROMYCES SPP. STRAINS ON THE SULFUR DIOXIDE CONCENTRATION IN WINE

    Directory of Open Access Journals (Sweden)

    Josip BELJAK

    2008-11-01

    Full Text Available The aim of this work was to study the infl uence of 8 autochthonous yeasts strains on the sulfur dioxide formation. For this purpose grape must from the Traminer, Muller Turgau and Chardonnay grapes was used. Yeast strains used were cultivated at the Department for Microbiology, Faculty of Agriculture, University of Zagreb. Five of them were H2S negative and three H2S positive. Tested yeast strains produced from 19 up to 45 mg/l of sulfur dioxide. The highest sulfur dioxide producer was one of the H2S positive yeast strains. The results indicated the initial sugar concentration to be very important for the ratio of sulfur dioxide production. Yeasts were more effi cient at higher sugar levels.

  5. Strongyloidiasis in a young French woman raises concern about possible ongoing autochthonous transmission in Spain

    Directory of Open Access Journals (Sweden)

    Alexandre Duvignaud

    2016-01-01

    Full Text Available Strongyloidiasis is one of the most common geohelminth infections in tropical and subtropical areas. Accurate diagnosis remains challenging, leading to an overall underestimation of strongyloidiasis prevalence. The possibility of ongoing autochthonous transmission in some temperate areas and especially in southern Europe is still debated, and data supporting this hypothesis are scarce. The case of a young French woman, who had travelled frequently to Spain and had acquired Strongyloides stercoralis infection as revealed by gastrointestinal symptoms and hypereosinophilia, is reported here. Physicians should keep in mind the risk of being infected in some areas of southern Europe, even if low, in order to avoid the life-threatening manifestations of strongyloidiasis favoured by pathological or therapeutic immunosuppression.

  6. Screening for ligninolytic enzymes from autochthonous fungi and applications for decolorization of Remazole Marine Blue

    Science.gov (United States)

    Erden, Emre; Ucar, M. Cigdem; Gezer, Tekin; Pazarlioglu, Nurdan Kasikara

    2009-01-01

    This study presents new and alternative fungal strains for the production of ligninolytic enzymes which have great potential to use in industrial and biotechnological processes. Thirty autochthonous fungal strains were harvested from Bornova-Izmir in Turkiye. In the fresh fruitbody extracts laccase, manganese peroxidase and lignin peroxidase activities, which are the principal enzymes responsible for ligninocellulose degradation by Basidiomycetes, were screened. Spores of some of the basidiomycetes species such as Cortinarius sp., Trametes versicolor, Pleurotus ostreatus, Abortiporus biennis, Lyophyllum subglobisporium, Ramaria stricta, Ganoderma carnosum, Lactarius delicious ve Lepista nuda were isolated and investigated optimum cultivation conditions in submerged fermentation for high yields of ligninolytic enzyme production. In addition, isolated fungal strains were monitored on agar plates whether having the capability of decolorization of a textile dye Remazol Marine Blue. PMID:24031371

  7. Do consumers from Međimurje region recognize their autochthonous Turoš cheese?

    Directory of Open Access Journals (Sweden)

    Kristijan Valkaj

    2013-11-01

    Full Text Available The aim of this study was to determine whether consumers from the Međimurje region recognise and distinguish the autochthonous cheese called Turoš from similar cheeses like Prgica and Kvargl originating from regions neighbouring to Međimurje. Chemical, textural and microbiological properties of all three cheeses were given. Preference tests with 200 consumers using a face-to-face survey and a two-step procedure were performed. The blind taste test showed that 97 % of the respondents recognised differences between the tasted samples, and almost half of them preferred the Turoš cheese. Similarly, the informed test showed that a significantly higher number of the respondents preferred the Turoš cheese in comparison to Kvargl and Prgica. Statistical analyses showed no significant differences between respondents’ preferences in the blind and the informed tests.

  8. Effect of autochthonous starter cultures on the biogenic amine content of ewe's milk cheese throughout ripening.

    Science.gov (United States)

    Renes, E; Diezhandino, I; Fernández, D; Ferrazza, R E; Tornadijo, M E; Fresno, J M

    2014-12-01

    Cheese is among the most commonly implicated foods associated with biogenic amines poisoning. The aim of this study was to evaluate the effects of the type of autochthonous starter culture and ripening time on the concentration of biogenic amines (histamine, tyramine, putrescine, cadaverine, tryptamine, β-phenylethylamine, spermine and spermidine) in cheeses made from pasteurized ewe's milk. 4 cheese batches were made, in duplicate, and ripened for 7 months. The biogenic amines of 40 cheeses were analysed by high performance liquid chromatography. The predominant biogenic amines determined at the end of the ripening time were phenylethylamine, spermine and tryptamine. Together, these accounted for 81% of the total of biogenic amines studied. The type of starter culture used to make the ewe's cheese had a significant effect (p culture made up entirely of Lactococcus lactis subsp. lactis and L. lactis subsp. cremoris or of the same in combination with Lactobacillus plantarum.

  9. [Autochthonous acute viral and bacterial infections of the central nervous system (meningitis and encephalitis)].

    Science.gov (United States)

    Pérez-Ruiz, Mercedes; Vicente, Diego; Navarro-Marí, José María

    2008-07-01

    Rapid diagnosis of acute viral and bacterial infections of the central nervous system (meningitis and encephalitis) is highly important for the clinical management of the patient and helps to establish early therapy that may solve life-threatening situations, to avoid unnecessary empirical treatments, to reduce hospital stay, and to facilitate appropriate interventions in the context of public health. Molecular techniques, especially real-time polymerase chain reaction, have become the fastest and most sensitive diagnostic procedures for autochthonous viral meningitis and encephalitis, and their role is becoming increasingly important for the diagnosis and control of most frequent acute bacterial meningitides. Automatic and closed systems may encourage the widespread and systematic use of molecular techniques for the diagnosis of these neurological syndromes in most laboratories.

  10. Seasonal variation of allochthonous and autochthonous energy inputs in an alpine stream

    Directory of Open Access Journals (Sweden)

    Stefano Fenoglio

    2014-10-01

    Full Text Available Despite the enormous importance of alpine streams, information about many aspects of their ecology is still insufficient. Alpine lotic systems differ in many environmental characteristics from those lower down, for example because above tree line streams drain catchments where terrestrial vegetation is scarce and allochthonous organic input is expected to be small. The main objectives of this study were to examine seasonal variation of autochthonous and allochthonous energetic inputs and their relationship with macroinvertebrate communities in the Po river, an alpine non-glacial stream (NW Italy. For one year, samplings were monthly performed in a homogeneous 100 m stream reach for discharge, autochthonous energy input (benthic chlorophyll a, allochthonous energy input (coarse particulate organic matter, abundance and structure of benthic macroinvertebrate community. Chlorophyll a concentrations were in the range of what reported for other alpine streams, but presented a time-lag with respect to what has been reported for glacial-fed mountain rivers. CPOM amounts were lower than those in lowland, forested streams of the same area but exhibited an intriguing, different seasonal variability, probably reported for the first time, with a maximum in spring and a minimum in winter. We collected 29,950 macroinvertebrates belonging to 13 families and 10 orders. Benthic communities were essentially dominated by Ephemeroptera, Plecoptera and Diptera. Scrapers was the most important FFG, but also Shredders were well represented. Relationships between chlorophyll a concentrations, CPOM availability and macroinvertebrate community characteristics were analysed and discussed considering the existence of different top-down or bottom-up regulation mechanisms. This study confirms that benthic algae constitute an essential resource for macroinvertebrates in alpine streams above the tree line but also underlines the importance of terrestrial organic input, a

  11. Autochthonous and allochthonous contributions of organic carbon to microbial food webs in Svalbard fjords

    KAUST Repository

    Holding, Johnna M.

    2017-03-27

    Rising temperatures in the Arctic Ocean are causing sea ice and glaciers to melt at record breaking rates, which has consequences for carbon cycling in the Arctic Ocean that are yet to be fully understood. Microbial carbon cycling is driven by internal processing of in situ produced organic carbon (OC), however recent research suggests that melt water from sea ice and glaciers could introduce an allochthonous source of OC to the microbial food web with ramifications for the metabolic balance of plankton communities. In this study, we characterized autochthonous and allochthonous sources of OC to the Western Svalbard fjord system using stable isotopes of carbon. We quantified δ13C of eukaryotic and prokaryotic planktonic groups using polar lipid-derived fatty acids as biomarkers in addition to measuring δ13C of marine particulate OC and dissolved OC from glacial runoff. δ13C of bacteria (−22.5‰) was higher than that of glacial runoff OC (−28.5‰) and other phytoplankton groups (−24.7 to −29.1‰), which suggests that marine bacteria preferentially use a third source of OC. We present a Bayesian three-source δ13C mixing model whereby ∼ 60% of bacteria carbon is derived from OC in sea ice, and the remaining carbon is derived from autochthonous production and glacial-derived OC. These results suggest that subsidies of OC from melting glaciers will not likely influence microbial carbon cycling in Svalbard fjords in the future and that further research is needed to determine the effects of melting sea ice on microbial carbon cycling in fjord systems and elsewhere in the Arctic Ocean.

  12. GENEALOGICAL DECOMPOSITION OF THE EFFECTIVE POPULATION SIZE: A CASE STUDY ON CROATIAN AUTOCHTHONOUS CATTLE BREEDS

    Directory of Open Access Journals (Sweden)

    Martin Reljanović

    2015-09-01

    Full Text Available Effective population size (Ne is one of the most important tools used to assess genetic diversity for conservation purposes. Using pedigree data of three Croatian autochthonous cattle breeds (Buša, Istrian and Slavonian Syrmian Podolian the effective maternal (NeF, paternal (NeM and combined maternal-paternal (NeFM population size was estimated. Additionally, we estimated the effective population size based on the census population sex ratio (Nes, the effective population size from the individual increase in inbreeding (NeFi and the effective population size from individual increase in coancestry (NeCi. We compared these sizes with the values obtained for 20 additional cattle populations, as well as with the newly calculated NeFM. The effective population sizes calculated for three autochthonous breeds were consistently the lowest in amongst all the considered cattle breeds. Utilisation of extremely small numbers of breeding males is the main reason for the observed reduction in the effective population size. The decomposition of effective population size into maternal and paternal components is shown to be an informative parameter in detecting the reduction of the effective population size as a consequence of unequal sex contribution. Still, the impact of the pedigree depth and completeness on the NeF, NeM and NeFM estimation remain to be analysed. A large deviation between Nes and all other methods of Ne estimation was observed and it is our recommendation that breeders and stakeholders should consider using alternative methods of Ne estimation when planning breeding programmes as well as in the determination of the endangered status of animal populations.

  13. Dietary preferences of two seagrass inhabiting gastropods: Allochthonous vs autochthonous resources

    Science.gov (United States)

    Doropoulos, C.; Hyndes, G. A.; Lavery, P. S.; Tuya, F.

    2009-06-01

    The movement of allochthonous resources between habitats can provide important trophic linkages in marine landscapes. In coastal south-western Australia, the kelp Ecklonia radiata is removed from reefs and accumulates in large quantities in neighbouring seagrass meadows. This study investigated the feeding preferences and grazing rates of two locally abundant gastropods, Pyrene bidentata and Cantharidus lepidus, which exhibit inverse distribution patterns with proximity to reefs in seagrass meadows, to determine whether allochthonous kelp has the potential to contribute to the seagrass food web. Using laboratory choice and no-choice feeding experiments, we tested whether detached kelp is consumed preferentially, and at greater rates, by these two species than autochthonous resources (i.e. seagrass, epiphytic red macroalgae and seagrass periphyton). Both species displayed a preference for macroalgae and seagrass periphyton over seagrass leaves. In choice experiments, neither species displayed any clear preference between kelp (fresh or aged), red macroalgae or periphyton (consumption rates ranged between 0.39 and 3.64 mg ind -1 day -1), but consumption rates were always higher relative to seagrass. In no-choice experiments, P. bidentata displayed minimal consumption of seagrass, but consumed fresh and aged kelp, red macroalgae and seagrass periphyton at similar rates (2.00-7.22 mg ind -1 day -1). In comparison, C. lepidus consumed periphyton at far greater rates than any other food source (3.61 vs 0.33-1.10 mg ind -1 day -1). The results indicate that both P. bidentata and C. lepidus showed a clear preference for macroalgae and periphyton over seagrass, but no consistent preference towards any autochthonous or allochthonous algal resource. Reef-derived kelp therefore has the potential to contribute to the food web of seagrass meadows, and subsidise secondary production.

  14. OXIDATION OF PERSISTANT ENVIRONMENTAL POLLUTANTS BY A WHITE ROT FUNGUS

    Science.gov (United States)

    The white rot fungus Phanerochaete chrysosporium degraded DDT [1,1,-bis(4-chlorophenyl)-2,2,2-trichloroethane], 3,4,3',4'-tetrachlorobiphenyl, 2,4,5,2',-4',5'-hexachlorobiphenyl, 2,3,7,8-tetrachlorodibenzo-p-dioxin, lindane (1,2,3,4,5,6-hexachlorocylohexane), and benzo[a]pyrene t...

  15. Rice Sheath Rot: An Emerging Ubiquitous Destructive Disease Complex.

    Science.gov (United States)

    Bigirimana, Vincent de P; Hua, Gia K H; Nyamangyoku, Obedi I; Höfte, Monica

    2015-01-01

    Around one century ago, a rice disease characterized mainly by rotting of sheaths was reported in Taiwan. The causal agent was identified as Acrocylindrium oryzae, later known as Sarocladium oryzae. Since then it has become clear that various other organisms can cause similar disease symptoms, including Fusarium sp. and fluorescent pseudomonads. These organisms have in common that they produce a range of phytotoxins that induce necrosis in plants. The same agents also cause grain discoloration, chaffiness, and sterility and are all seed-transmitted. Rice sheath rot disease symptoms are found in all rice-growing areas of the world. The disease is now getting momentum and is considered as an important emerging rice production threat. The disease can lead to variable yield losses, which can be as high as 85%. This review aims at improving our understanding of the disease etiology of rice sheath rot and mainly deals with the three most reported rice sheath rot pathogens: S. oryzae, the Fusarium fujikuroi complex, and Pseudomonas fuscovaginae. Causal agents, pathogenicity determinants, interactions among the various pathogens, epidemiology, geographical distribution, and control options will be discussed.

  16. Molecular systematics of the cotton root rot pathogen, Phymatotrichopsis omnivora

    NARCIS (Netherlands)

    Marek, S.M.; Hansen, K.; Romanish, M.; Thorn, R.G.

    2009-01-01

    Cotton root rot is an important soilborne disease of cotton and numerous dicot plants in the south-western United States and Mexico. The causal organism, Phymatotrichopsis omnivora (= Phymatotrichum omnivorum), is known only as an asexual, holoanamorphic (mitosporic) fungus, and produces conidia res

  17. Susceptibility of highbush blueberry cultivars to Phytophthora root rot

    Science.gov (United States)

    Phytophthora cinnamomi Rands is a ubiquitous soilborne pathogen associated with root rot in many woody perennial plant species, including highbush blueberry (Vaccinium sp.). To identify genotypes with resistance to the pathogen, cultivars and advanced selections of highbush blueberry were grown in a...

  18. Botanicals to Control Soft Rot Bacteria of Potato

    Directory of Open Access Journals (Sweden)

    M. M. Rahman

    2012-01-01

    Full Text Available Extracts from eleven different plant species such as jute (Corchorus capsularis L., cheerota (Swertia chiraita Ham., chatim (Alstonia scholaris L., mander (Erythrina variegata, bael (Aegle marmelos L., marigold (Tagetes erecta, onion (Allium cepa, garlic (Allium sativum L., neem (Azadiracta indica, lime (Citrus aurantifolia, and turmeric (Curcuma longa L. were tested for antibacterial activity against potato soft rot bacteria, E. carotovora subsp. carotovora (Ecc P-138, under in vitro and storage conditions. Previously, Ecc P-138 was identified as the most aggressive soft rot bacterium in Bangladeshi potatoes. Of the 11 different plant extracts, only extracts from dried jute leaves and cheerota significantly inhibited growth of Ecc P-138 in vitro. Finally, both plant extracts were tested to control the soft rot disease of potato tuber under storage conditions. In a 22-week storage condition, the treated potatoes were significantly more protected against the soft rot infection than those of untreated samples in terms of infection rate and weight loss. The jute leaf extracts showed more pronounced inhibitory effects on Ecc-138 growth both in in vitro and storage experiments.

  19. Phytophthora root rot resistance in soybean E00003

    Science.gov (United States)

    Phytophthora root rot (PRR), caused by the oomycete Phytophthora sojae, is a devastating disease in soybean production. Using resistant cultivars has been suggested as the best solution for disease management. Michigan elite soybean E00003 is resistant to P. sojae and has been used as a PRR resist...

  20. Detecting cotton boll rot with an electronic nose

    Science.gov (United States)

    South Carolina Boll Rot is an emerging disease of cotton, Gossypium hirsutum L., caused by the opportunistic bacteria, Pantoea agglomerans (Ewing and Fife). Unlike typical fungal diseases, bolls infected with P. agglomerans continue to appear normal externally, complicating early and rapid detectio...

  1. Root rot of sugarbeet in the Vojvodina Province

    Directory of Open Access Journals (Sweden)

    Stojšin Vera B.

    2006-01-01

    Full Text Available Large changes introduced in the sugar beet production technology in the Vojvodina Province over last 40 years resulted in changes in the etiology and harmfulness of different agents of sugar beet root diseases. Improvements in cultivation practices reduced the harmfulness of some diseases while increased the harmfulness of others. Some disease agents became obsolete, but others gained importance. New agents of root diseases were found. The most frequent damages, persisting over long periods of time were caused by seedling damping-off, Fusarium root rot, charcoal root rot, parasitic (Rhizomania and non-parasitic root bearding. The parasitic damping-off caused by several fungal species but most frequently by Phoma betae occurred at the time when multigerm seeds were used in combination with extensive cultural practices. The agents of seedling diseases completely lost their significance as the consequence of switching to fungicide - treated monogerm seeds, earlier planting and improved soil tillage. In the period of intensive use of agricultural chemicals, seedling damping-off occurred frequently due to the phytotoxic action of chemicals (insecticides, herbicides and mineral fertilizers. In some years, frosts caused damping- off of sugar beet seedlings on a large scale in the Vojvodina Province. Poor sugar beet germination and emergence were frequently due to spring droughts. Sometimes they were due to strong winds. The occurrence of Fusarium root rot and charcoal root rot intensified on poor soils. Fusariosis symptoms were exhibited as plant wilting and different forms of root rot. In recent years root tip rot has occurred frequently in the first part of the growing season causing necrosis and dying of plants. Lateral roots tended to proliferate from the healthy tissue, giving the root a bearded appearance similar to Rhizomania. Fusarium oxysporum was the most frequent agent of this fusariosis. F. graminearum, F. equiseti, F. solani have also been

  2. Resting energy expenditure in white and non-white severely obese women Gasto energético en reposo de mujeres obesas severas blancas y no blancas

    Directory of Open Access Journals (Sweden)

    L. Mika Horie

    2009-12-01

    Full Text Available This study aimed to compare the resting energy expenditure (REE of white and non-white severely obese Brazilian women. REE was examined in 83 severely obese Brazilian women (n = 58 white and 25 non-white with mean (± SD age 42.99 ± 11.35 and body mass index 46.88 ± 6.22 kg/m² who were candidates for gastric bypass surgery. Body composition was assessed by air displacement plethysmography (ADP BOD PODÒ body composition system (Life Measurement Instruments, Concord, CA and REE was measured, under established protocol, with an open-circuit calorimeter (Deltatrac II MBM-200, Datex-Ohmeda, Madison, WI, USA. There was no significant difference between the REE of white and non-white severely obese women (1,953 ± 273 and 1,906 ± 271 kcal/d, respectively; p = 0.48. However, when adjusted for fat free mass (MLG, REE was significantly higher in nonwhite severely obese women (difference between groups of 158.4 kcal, p El presente estudio tenía como objetivo comparar el gasto energético en reposo (GER de mujeres brasileñas obesas severas, blancas y no blancas. Se examinó el GER en 83 mujeres brasileñas obesas severas (n = 58 blancas y 25 no blancas con un promedio de edad (± SD de 42,99 ± 11,35 e índice de masa corporal de 46,88 ± 6,22 kg/m², que serían sometidas a cirugía de bypass gástrico. Se evaluó la composición corporal por medio de una pletismografía por desplazamiento de aire (ADP BOD PODÒ sistema de composición corporal (de Life Measurement Instruments, Concord, California, EE.UU. y se evaluó el GER, de acuerdo con el protocolo establecido, con un calorímetro de circuito abierto (fabricado por Deltatrac II MBM-200, Datex-Ohmeda, Madison, Wisconsin, EE.UU.. No se encontraron diferencias significativas entre el GER de mujeres obesas severas blancas y no blancas (1.953 ± 273 y 1.906 ± 271 kcal/d, respectivamente; p = 0,48. Sin embargo, al ajustarse en masa libre de grasa (FFM, por sus siglas en inglés, el GER fue

  3. Evaluation of autochthonous bioaugmentation and biostimulation during microcosm-simulated oil spills.

    Science.gov (United States)

    Nikolopoulou, M; Pasadakis, N; Kalogerakis, N

    2013-07-15

    Oil spills are treated as a widespread problem that poses a great threat to any ecosystem. Following first response actions, bioremediation has emerged as the best strategy for combating oil spills and can be enhanced by the following two complementary approaches: bioaugmentation and biostimulation. Bioaugmentation is one of the most controversial issues of bioremediation. Studies that compare the relative performance of bioaugmentation and biostimulation suggest that nutrient addition alone has a greater effect on oil biodegradation than the addition of microbial products because the survival and degradation ability of microbes introduced to a contaminated site are highly dependent on environmental conditions. Microbial populations grown in rich media under laboratory conditions become stressed when exposed to field conditions in which nutrient concentrations are substantially lower. There is increasing evidence that the best approach to overcoming these barriers is the use of microorganisms from the polluted area, an approach proposed as autochthonous bioaugmentation (ABA) and defined as a bioaugmentation technology that exclusively uses microorganisms indigenous to the sites (soil, sand, and water) slated for decontamination. In this work, we examined the effectiveness of strategies combining autochthonous bioaugmentation with biostimulation for successful remediation of polluted marine environments. Seawater was collected from a pristine area (Agios Onoufrios Beach, Chania) and was placed in a bioreactor with 1% v/v crude oil to facilitate the adaptation of the indigenous microorganism population. The pre-adapted consortium and the indigenous population were tested in combination with inorganic or lipophilic nutrients in the presence (or absence) of biosurfactants (rhamnolipids) during 90-day long experiments. Chemical analysis (gas chromatography-mass spectrometry) of petroleum hydrocarbons confirmed the results of previous work demonstrating that the

  4. Application of scan line filling to leaf image segmentation of sugarcane red rot disease

    Science.gov (United States)

    Zhao, Jinhui; Liu, Muhua; Yao, Mingyin

    2009-07-01

    Red rot disease is a common disease at the seedling stage of sugarcane. In order to identify red rot disease effectively, a segmentation algorithm for leaf images of sugarcane red rot disease using scan line filling is proposed. The proposed algorithm has six stages. During the first stage, the class of green plants is separated from the class of non-green plants using the color feature of 2G-R-B. At the second stage, connected regions of the class of green plants are labeled. At the third stage, outer contours are extracted. At the fourth stage, the regions surrounded by outer contours are filled using scan line filling. At the fifth stage, the images are colorized. At the sixth stage, red rot diseased spots are extracted using the color feature. The experimental results show that this algorithm can extract red rot diseased spots effectively, and the accurate rate of image segmentation for red rot diseases is 96%.

  5. Pengaruh Penambahan Jamur Pelapuk Putih (White Rot Fungi pada Proses Pengomposan Tandan Kosong Kelapa Sawit

    Directory of Open Access Journals (Sweden)

    Nasrul Nasrul

    2010-12-01

    Full Text Available Composting is nowadays a general treatment method for agriculture waste such as empty fruit bunch. This research article reported the composting process of the empty fruit bunches. The effect of addition of white rot fungi (Phanerochaete Chrysosporium as an activator on composting product was studied. Experiment results indicated that white rot fungi is a good activator to improve degradation process of the empty fruit bunch become an organic fertilizer. White rot fungi has capable to increase composting period become shorter in compare with original composting without addition of white rot fungi. The organic fertilizer product as regulation issued by the Standar Nasional Indonesia (NSI can be achieved in duration of 3 months, while for original process without addition of white rot fungi longer degradation time is necessary. Keyword: Composting, empty fruit bunch, white rot fungi

  6. First record of autochthonous canine ehrlichiosis caused by Ehrlichia canis in Romania.

    Science.gov (United States)

    Morar, Doru; Dărăbuş, Gheorghe; Imre, Mirela; Ilie, Marius Stelian; Imre, Kálmán

    2015-06-01

    This case study describes the first genetically confirmed and clinically manifested autochthonous Ehrlichia canis infection in a 9-year-old female mixed-breed dog from Romania. Health screening of the dog included clinical examination, evaluation of stained peripheral blood smear and hematologic variables, as well as serologic testing and molecular analysis. Clinical signs included fever, apathy, dehydration, pale mucous membranes, and weakness. The microscopic examination of the blood smear and immunologic assays for Borrelia burgdorferi, Anaplasma phagocytophilum, and E canis antibodies, and for Dirofilaria immitis antigen yielded negative results. Hematologic abnormalities included moderate nonregenerative anemia, leucopenia with neutropenia, and moderate thrombocytopenia. The biochemical abnormalities identified were hypoalbuminemia, and mildly increased serum enzyme activities of AST and ALT. In addition, increased urea and creatinine levels associated with low urine specific gravity and proteinuria were also present. Nested PCR amplification of the partial E canis 16S rRNA gene demonstrated the presence of this rickettsial pathogen in the dog's blood, which subsequently was confirmed through sequencing based on the 100% homology with GenBank deposited E canis isolates. After specific treatment with doxycycline (10 mg/kg, orally, SID) for one month, the proteinuria, and hematologic and serum biochemical abnormalities with the exception of mild azotemia resolved. This report supports the geographical expansion of canine ehrlichiosis caused by E canis in nonendemic regions of Europe.

  7. Study on the reproductive capacity of bulls of the autochthonous Rhodope Shorthorn cattle breed

    Directory of Open Access Journals (Sweden)

    Radka Malinova

    2015-06-01

    Full Text Available The sperm production of bulls from the autochthonous Rhodope Shorthorn cattle breed was studied. The breed is among the smallest in Europe, the average weight of the cows ranging from 200 to 250 kg, and of the bulls from 330 to 370 kg. It was found that during the first 6 months from the start of exploitation, at the age of the bulls from 18 to 24 months, AI bulls had high reproductive capacity. The ejaculate volume was 1,74±0,09 ml in average (LS, the percentage of motile spermatozoa was 74,3±3,48% and the concentration 1268±13,1 x 106/ml. It was established that the bull had a significant impact on the reproductive performance, but the individual differences in the main characteristics were not high – motility 71,8-77,0%, concentration – 1222-1324 х 106/ml. The season also had a significant effect on the percentage of motile spermatozoa. Within the period from January to June, the highest reproductive capacity of the bulls was observed from February to May and the lowest in June.

  8. Determinants of the intention to purchase an autochthonous local lamb breed: Spanish case study.

    Science.gov (United States)

    Gracia, Azucena; Maza, María Teresa

    2015-12-01

    The aim of the paper is to study consumers' acceptability for a lamb meat from a local autochthonous breed. An intention to purchase model was developed based on the Theory of Planned Behavior (TPB) and estimated using data from a survey conducted in Spain. Results indicated that consumers were willing to buy this lamb meat because 86% of respondents said that they probably/definitely would buy it, although only 23% would if the meat is not available in their usual meat store. Then, the lack of availability in the market is an aspect limiting its consumption. The most important factors explaining the intention to purchase for consumers who would purchase this meat if it were not available in their usual store are the importance attached to the animal breed and their social embeddedness with the local area. An appropriate food policy would be to inform consumers about the importance of the animal breed in the quality of the meat and the local origin.

  9. Improving the antioxidant properties of quinoa flour through fermentation with selected autochthonous lactic acid bacteria.

    Science.gov (United States)

    Rizzello, Carlo Giuseppe; Lorusso, Anna; Russo, Vito; Pinto, Daniela; Marzani, Barbara; Gobbetti, Marco

    2017-01-16

    Lactic acid bacteria strains, previously isolated from the same matrix, were used to ferment quinoa flour aiming at exploiting the antioxidant potential. As in vitro determined on DPPH and ABTS radicals, the scavenging activity of water/salt-soluble extracts (WSE) from fermented doughs was significantly (Pquinoa dough fermented with Lactobacillus plantarum T0A10. The corresponding WSE was subjected to Reverse Phase Fast Protein Liquid Chromatography, and 32 fractions were collected and subjected to in vitro assays. The most active fraction was resistant to further hydrolysis by digestive enzymes. Five peptides, having sizes from 5 to 9 amino acid residues, were identified by nano-Liquid Chromatography-Electrospray Ionisation-Mass Spectra/Mass Spectra. The sequences shared compositional features which are typical of antioxidant peptides. As shown by determining cell viability and radical scavenging activity (MTT and DCFH-DA assays, respectively), the purified fraction showed antioxidant activity on human keratinocytes NCTC 2544 artificially subjected to oxidative stress. This study demonstrated the capacity of autochthonous lactic acid bacteria to release peptides with antioxidant activity through proteolysis of native quinoa proteins. Fermentation of the quinoa flour with a selected starter might be considered suitable for novel applications as functional food ingredient, dietary supplement or pharmaceutical preparations.

  10. Alkaline bioleaching of municipal solid waste incineration fly ash by autochthonous extremophiles.

    Science.gov (United States)

    Ramanathan, Thulasya; Ting, Yen-Peng

    2016-10-01

    The increasing demand for energy and the generation of solid waste have caused an alarming rise in fly ash production globally. Since heavy metals continue to be in demand for the production of materials, resource recovery from the recycling of these wastes has the potential to delay the depletion of natural ores. The use of microorganisms for the leaching of metals, in a process called bioleaching, is an eco-friendly and economical way to treat the metal-laden wastes. Bioleaching of fly ash is challenging due largely to the alkaline nature and toxic levels of heavy metals which are detrimental to microbial growth and bioleaching activity. The present work reports the isolation of indigenous bacteria from a local fly ash landfill site and their bioleaching performance. 38 autochthonous strains of bacteria were isolated from eight samples collected and plated on five different media. 18 of the isolates showed bioleaching potential, with significant alkaline pH or fly ash tolerance. Genetic characterization of the strains revealed a dominance of Firmicutes, with Alkalibacterium sp. TRTYP6 showing highest fly ash tolerance of up to 20% w/v fly ash, and growth over a pH range 8-12.5. The organism selectively recovered about 52% Cu from the waste. To the best of our knowledge, this is the first time a study on bioleaching with extreme alkaliphiles is reported.

  11. Use of autochthonous lactic acid bacteria starters to ferment mango juice for promoting its probiotic roles.

    Science.gov (United States)

    Liao, Xue-Yi; Guo, Li-Qiong; Ye, Zhi-Wei; Qiu, Ling-Yan; Gu, Feng-Wei; Lin, Jun-Fang

    2016-05-18

    Strains of Leuconostoc mesenteroides, Pediococcus pentosaceus, and Lactobacillus brevis were identified from mango fruits by partial 16S rDNA gene sequence. Based on the ability of producing mannitol and diacetyl, Leuconostoc mesenteroides MPL18 and MPL39 were selected within the lactic acid bacteria isolates, and used as mixed starters to ferment mango juice (MJ). Both the autochthonous strains grew well in fermented mango juice (FMJ) and remained viable at 9.81 log cfu mL(-1) during 30 days of storage at 4°C. The content of total sugar of FMJ was lower than that of MJ, while the concentration of mannitol was higher than that of MJ, and the concentration of diacetyl was 3.29 ± 0.12 mg L(-1). Among detected organic acids including citric acid, gallic acid, lactic acid, and acetic acid, only citric acid and gallic acid were found in MJ, while all detected organic acids were found in FMJ. The concentration of lactic acid of FMJ was the highest (78.62 ± 13.66 mM) among all detected organic acids. The DPPH radical scavenging capacity of FMJ was higher than that of MJ. Total phenolic compounds were better preserved in FMJ. The acidity and sweetness had a noticeable impact on the overall acceptance of the treated sample.

  12. The potential of autochthonous microbial culture encapsulation in a confined environment for phenol biodegradation.

    Science.gov (United States)

    Azaizeh, Hassan; Kurzbaum, Eyal; Said, Ons; Jaradat, Husain; Menashe, Ofir

    2015-10-01

    Olive mill wastewater (OMWW) is claimed to be one of the most polluting effluents produced by agro-food industries, providing high contaminants load that encase cytotoxic agents such as phenolic and polyphenolic compounds. Therefore, a significant and continuous stress episode is induced once the mixed liquor of the wastewater treatment plants (WWTP's) is being exposed to OMWW. The use of bio-augmentation treatment procedures can be useful to eliminate or reduce such stress episodes. In this study, we have estimated the use of autochthonous biomass implementation within small bioreactor platform (SBP) particles as a bio-augmentation method to challenge against WWTPs stress episodes. Our results showed that SBP particles significantly reduced the presence of various phenolics: tannic, gallic and caffeic acid in a synthetic medium and in crude OMWW matrix. Moreover, the SBP particles succeeded to biodegrade a very high concentration of phenol blend (3000 mg L(-1)). Our findings indicated that the presence of the SBP microfiltration membrane has reduced the phenol biodegradation rate by 50 % compared to the same suspended culture. Despite the observed reduction in biodegradation rate, encapsulation in a confined environment can offer significant values such as overcoming the grazing forcers and dilution, thus achieving a long-term sufficient biomass. The potential for reducing stress episodes caused by cytotoxic agents through bio-augmentation treatment procedure using the SBP technology is discussed.

  13. Characterization and Technological Features of Autochthonous Coagulase-Negative Staphylococci as Potential Starters for Portuguese Dry Fermented Sausages.

    Science.gov (United States)

    Semedo-Lemsaddek, Teresa; Carvalho, Laura; Tempera, Carolina; Fernandes, Maria H; Fernandes, Maria J; Elias, Miguel; Barreto, António S; Fraqueza, Maria J

    2016-05-01

    The manufacture of dry fermented sausages is an important part of the meat industry in Southern European countries. These products are usually produced in small shops from a mixture of pork, fat, salt, and condiments and are stuffed into natural casings. Meat sausages are slowly cured through spontaneous fermentation by autochthonous microbiota present in the raw materials or introduced during manufacturing. The aim of this work was to evaluate the technological and safety features of coagulase-negative staphylococci (CNS) isolated from Portuguese dry fermented meat sausages in order to select autochthonous starters. Isolates (n = 104) obtained from 2 small manufacturers were identified as Staphylococcus xylosus, Staphylococcus equorum, Staphylococcus saprophyticus, and Staphylococcus carnosus. Genomically diverse isolates (n = 82) were selected for further analysis to determine the ability to produce enzymes (for example, nitrate-reductases, proteases, lipases) and antibiotic susceptibility. Autochthonous CNS producing a wide range of enzymes and showing low antibioresistance were selected as potential starters for future use in the production of dry fermented meat sausages.

  14. Cellulose Degradation by Cellulose-Clearing and Non-Cellulose-Clearing Brown-Rot Fungi

    OpenAIRE

    Highley, Terry L.

    1980-01-01

    Cellulose degradation by four cellulose-clearing brown-rot fungi in the Coniophoraceae—Coniophora prasinoides, C. puteana, Leucogyrophana arizonica, and L. olivascens—is compared with that of a non-cellulose-clearing brown-rot fungus, Poria placenta. The cellulose- and the non-cellulose-clearing brown-rot fungi apparently employ similar mechanisms to depolymerize cellulose; most likely a nonenzymatic mechanism is involved.

  15. Trichoderma spp. decrease Fusarium root rot in common bean

    Directory of Open Access Journals (Sweden)

    Hudson Teixeira

    2012-12-01

    Full Text Available The effectiveness of six Trichoderma-based commercial products (TCP in controlling Fusarium root rot (FRR in common bean was assessed under field conditions. Three TCP, used for seed treatment or applied in the furrow, increased seedling emergence as much as the fungicide fludioxonil. FRR incidence was not affected, but all TCP and fludioxonil reduced the disease severity, compared to control. Application of Trichoderma-based products was as effective as that of fludioxonil in FRR management.

  16. Rice Sheath Rot: An Emerging Ubiquitous Destructive Disease Complex

    OpenAIRE

    Vincent de Paul Bigirimana; Khuong Hoang Gia Hua; Obedi Ishibwela Nyamangyoku; Monica eHöfte

    2015-01-01

    Around one century ago, a rice disease characterized mainly by rotting of sheaths was reported in Taiwan. The causal agent was identified as Acrocylindrium oryzae, later known as Sarocladium oryzae. Since then it has become clear that various other organisms can cause similar disease symptoms, including Fusarium spp. and fluorescent pseudomonads. These organisms have in common that they produce a range of phytotoxins that induce necrosis in plants. The same agents also cause grain discolorati...

  17. Environmental Factors and Bioremediation of Xenobiotics Using White Rot Fungi

    OpenAIRE

    Magan, Naresh; Fragoeiro, Silvia; Bastos, Catarina

    2010-01-01

    This review provides background information on the importance of bioremediation approaches. It describes the roles of fungi, specifically white rot fungi, and their extracellular enzymes, laccases, ligninases, and peroxidises, in the degradation of xenobiotic compounds such as single and mixtures of pesticides. We discuss the importance of abiotic factors such as water potential, temperature, and pH stress when considering an environmental screening approach, and examples are provided of the ...

  18. The First Report of Postharvest Stem Rot of Kohlrabi Caused by Sclerotinia sclerotiorum in Korea.

    Science.gov (United States)

    Kim, Joon-Young; Aktaruzzaman, Md; Afroz, Tania; Hahm, Young-Il; Kim, Byung-Sup

    2014-12-01

    In March 2014, a kohlrabi stem rot sample was collected from the cold storage room of Daegwallyong Horticultural Cooperative, Korea. White and fuzzy mycelial growth was observed on the stem, symptomatic of stem rot disease. The pathogen was isolated from the infected stem and cultured on potato dextrose agar for further fungal morphological observation and to confirm its pathogenicity, according to Koch's postulates. Morphological data, pathogenicity test results, and rDNA sequences of internal transcribed spacer regions (ITS 1 and 4) showed that the postharvest stem rot of kohlrabi was caused by Sclerotinia sclerotiorum. This is the first report of postharvest stem rot of kohlrabi in Korea.

  19. Fruit Morphological Changes during Pit Hardening in Autochthonous Istrian Olive (Olea europaea L. Cultivars

    Directory of Open Access Journals (Sweden)

    Marin Krapac

    2014-02-01

    Full Text Available Endocarp lignification is important fruit growth phenophase since after its completion fruit starts with oil accumulation. The information about duration of endocarp lignification is important for timing of management practices, irrigation and pest control in oil cultivars, and fruit thinning in table cultivars to obtain uniform fruit weight and size. In this study, fruit length, width and weight of four Istrian autochthonous olive cultivars (‘Buža’, ‘Puntoža’, ‘Rošinjola’ and ‘Istarska bjelica’ were measured. Samples were taken from olive collection orchard of the Institute of Agriculture and Tourism in Poreč in equal growing conditions. The aim of the research was to define an olive fruit growth dynamics during pit hardening. Fruit weight in all cultivars was increasing during endocarp lignification (from 7th to 28th July. The highest percentage in the weight growth in the first week had cultivars ‘Buža’ (48.5% and ‘Rošinjola’ (44.6% while in the second week maximum was reached by cultivars ‘Puntoža’ (44.2% and ‘Istarska bjelica’ (42%. The highest increase in total fruit mass was detected in ‘Puntoža’ (1.30 g and the least at ‘Rošinjola’ (0.56 g. Maximum increase in length (L and width (W had ‘Puntoža’ (L: 7.13 mm; W: 4.23 mm and the least ‘Istarska bjelica’ (L: 2.48 mm; W: 2.70 mm.

  20. Polychlorinated biphenyl (PCB) anaerobic degradation in marine sediments: microcosm study and role of autochthonous microbial communities.

    Science.gov (United States)

    Matturro, Bruna; Ubaldi, Carla; Grenni, Paola; Caracciolo, Anna Barra; Rossetti, Simona

    2016-07-01

    Polychlorobiphenyl (PCB) biodegradation was followed for 1 year in microcosms containing marine sediments collected from Mar Piccolo (Taranto, Italy) chronically contaminated by this class of hazardous compounds. The microcosms were performed under strictly anaerobic conditions with or without the addition of Dehalococcoides mccartyi, the main microorganism known to degrade PCBs through the anaerobic reductive dechlorination process. Thirty PCB congeners were monitored during the experiments revealing that the biodegradation occurred in all microcosms with a decrease in hepta-, hexa-, and penta-chlorobiphenyls (CBs) and a parallel increase in low chlorinated PCBs (tri-CBs and tetra-CBs). The concentrations of the most representative congeners detected in the original sediment, such as 245-245-CB and 2345-245-CB, and of the mixture 2356-34-CB+234-245-CB, decreased by 32.5, 23.8, and 46.7 %, respectively, after only 70 days of anaerobic incubation without any bioaugmentation treatment. Additionally, the structure and population dynamics of the microbial key players involved in the biodegradative process and of the entire mixed microbial community were accurately defined by Catalyzed Reporter Deposition Fluorescence In Situ Hybridization (CARD-FISH) in both the original sediment and during the operation of the microcosm. The reductive dehalogenase genes of D. mccartyi, specifically involved in PCB dechlorination, were also quantified using real-time PCR (qPCR). Our results demonstrated that the autochthonous microbial community living in the marine sediment, including D. mccartyi (6.32E+06 16S rRNA gene copy numbers g(-1) sediment), was able to efficiently sustain the biodegradation of PCBs when controlled anaerobic conditions were imposed.

  1. Differential utilization of allochthonous and autochthonous carbon by aquatic insects of two shrub-steppe desert spring-streams: A stable carbon isotope analysis and critique of the method

    Energy Technology Data Exchange (ETDEWEB)

    Mize, A.L. [Old Dominion Univ., Norfolk, VA (United States)

    1993-06-01

    The purpose of this study is to assess whether the carbon supporting stream food webs comes principally from terrestrial sources or is produced within the stream. Lacking data to resolve the allochthonous/autochthonous issue with any finality, stream ecologists have alternately postulated that stream carbon was principally autochthonous or principally allochthonous. Others argued that autochthonous and allochthonous carbon resources cannot be separated and that the allochthonous/autochthonous dependence issue is unresolvable. Many investigators have seized upon stable carbon isotopes technology as the tool to resolve the controversy. Unfortunately most investigators have conceded that the results are rarely quantitative and that the qualitative relationships are ambiguous. This study points out the fallacies of trying to conjure single isotopic values for either allochthonous or autochthonous carbon. It suggests that stable carbon isotope technology is not reliable in establishing specific consumer/food source relations and that it is not suitable for assessing allochthonous/autochthonous carbon dependence in freshwater streams.

  2. Potassium and Phosphorus effects on disease severity of charcoal rot of soybean

    Science.gov (United States)

    The effects of potassium (K) and phosphorus (P) fertilizers on charcoal rot of soybean [Glycine max (L.) Merr.] are unknown. Therefore, the severity of charcoal rot was studied at five levels of K (0, 37, 75, 111 and 149 kg K ha-1) and a level that was equal to the recommended fertilizer applicatio...

  3. Development of dry gram-negative bacteria biocontrol products and small pilot tests against dry rot

    Science.gov (United States)

    Pseudomonas fluorescens strains S11:P:12, P22:Y:05, and S22:T:04 suppress four important storage potato maladies; dry rot, late blight, pink rot, and sprouting. Studies were designed to identify methods for producing a dried, efficacious biological control product. The strains were evaluated individ...

  4. Control of speck rot in apple fruit caused by Phacidiopycnis washingtonensis with pre- and postharvest fungicides

    Science.gov (United States)

    Speck rot caused by Phacidiopycnis washingtonensis is a recently reported postharvest fruit rot disease of apple. Infection of apple fruit by the fungus occurs in the orchard, but symptoms develop during storage. In this study, selected pre- and postharvest fungicides were evaluated for control of s...

  5. First report of Fusarium hostae causing crown rot of wheat (Triticum spp.) in Turkey

    Science.gov (United States)

    Crown rot disease of wheat is caused by a complex of Fusarium species. To identify species associated with crown rot in Turkey, crowns and stems of bread wheat (Triticum aestivum L.) and durum wheat (T. durum Desf.) were collected from the Central and Southeast Anatolia, Black Sea, Aegean, Mediterr...

  6. Studies on the epidemiology of spear rot in oil palm (Elaeis guineensis Jacq.) in Suriname.

    NARCIS (Netherlands)

    Lande, van de H.L.

    1993-01-01

    The epidemiology of spear rot, an infectious disease of unknown etiology, was studied over 10 years at three government-owned oil palm plantations in Suriname. As with other and similar diseases, amarelecimento fatal in Brazil and pudrición del cogollo in Latin America, which too show rot and yellow

  7. Preharvest applications of fungicides for control of Sphaeropsis rot in stored apples

    Science.gov (United States)

    Sphaeropsis rot caused by Sphaeropsis pyriputrescens is a recently reported postharvest fruit rot disease of apple in Washington State and causes significant economic losses. Infection of apple fruit by the fungus occurs in the orchard, but decay symptoms develop during storage or in the market. The...

  8. Vine kill interval and temperature effects on Fusarium dry rot development in Russet Burbank

    Science.gov (United States)

    Fusarium dry rot disease development in potato storage is universal to all market sectors and regions. The objective of this 2-year study was to evaluate three possible management decisions that may impact Fusarium dry rot development in storage: a) vine kill to harvest time, b) harvested tuber pulp...

  9. First Report of Calonectria hongkongensis Causing Fruit Rot of Rambutan (Nephelium lappaceum)

    NARCIS (Netherlands)

    Serrato-Diaz, L.M.; Latoni-Brailowsky, E.I.; Rivera-Vargas, L.I.; Goenaga, R.J.; Crous, P.W.; French-Monar, R.D.

    2013-01-01

    Fruit rot of rambutan is a pre- and post-harvest disease problem of rambutan orchards. In 2011, fruit rot was observed at USDA-ARS orchards in Mayaguez, Puerto Rico. Infected fruit were collected and 1 mm2 tissue sections were surface disinfested with 70% ethanol followed by 0.5% sodium hypochlorite

  10. The presence and survival of soft rot (Erwinia) in flower bulb production systems

    NARCIS (Netherlands)

    Doorn, van J.; Vreeburg, P.J.M.; Leeuwen, van P.J.; Dees, R.H.L.

    2011-01-01

    Soft rot is causing increasing damage in the flower bulb industry. Bulbous ornamentals such as Hyacinthus, Dahlia, Iris, Muscari, Freesia and Zantedeschia can be infected. Soft rot in flower bulbs is mainly caused by Dickeya spp. (Dickeya spp.) and Erwinia carotovora subsp. carotovora (Pectobacteriu

  11. Efficacy of management tools for control of Pythium root rot of Douglas fir seedlings, 2010

    Science.gov (United States)

    This study investigated the efficacy of management tools for control of Pythium root rot of Douglas fir seedlings. This effort was conducted as part of the IR-4 Ornamental Horticulture program to evaluate fungicides and biopesticides for management of root, crown and stem rot of ornamental plants ca...

  12. BIO-DEINKING OF ONP AND ITS EFFLUENT TREATMENT BY WHITE ROT FUNGUS

    Institute of Scientific and Technical Information of China (English)

    Lu Lin; Chunsheng Pang; Deqing Zhao; Liping Jiang

    2004-01-01

    Deinking of secondary fiber of ONP and effluent treatment with white rot fungus were studied in this paper. Results showed that white rot fungus exerted significant effect on deinking of ONP and CODcr decrease and degradation of pollutants of deinking effluent.

  13. Optimization of manganese peroxidase production by the white rot fungus Bjerkandera sp. strain BOS55.

    NARCIS (Netherlands)

    Mester, T.; Field, J.A.

    1997-01-01

    Manganese dependent peroxidase (MnP) is the most ubiquitous peroxidase produced by white rot fungi. MnP is known to be involved in lignin degradation, biobleaching and in the oxidation of hazardous organopollutants. Bjerkandera sp. strain BOS55 is a nitrogen-unregulated white rot fungus which produc

  14. Leaf Spot and Stem Rot on Wilford Swallowwort Caused by Stemphylium lycopersici in Korea.

    Science.gov (United States)

    Hong, Sung Kee; Choi, Hyo Won; Lee, Young Kee; Shim, Hong Sik; Lee, Sang Yeob

    2012-12-01

    In June 2012, leaf spot and stem rot were observed on Wilford Swallowwort plants grown in Cheonan, Korea. Three fungal isolates obtained from the diseased leaves and stems were identified as Stemphylium lycopersici, based on morphological, cultural, and molecular characteristics and pathogenicity. This is the first report of leaf spot and stem rot on Wilford Swallowwort caused by S. lycopersici.

  15. Postharvest salicylic acid treatment reduces storage rots in water-stressed but no unstressed sugarbeet roots

    Science.gov (United States)

    Exogenous application of salicylic acid (SA) reduces storage rots in a number of postharvest crops. SA’s ability to protect sugarbeet (Beta vulgaris L.) taproots from common storage rot pathogens, however, is unknown. To determine the potential of SA to reduce storage losses caused by three common...

  16. Interaction of Rhizoctonia solani and Rhizopus stolonifer Causing Root Rot of Sugar Beet

    Science.gov (United States)

    In recent years, growers in Michigan and other sugar beet production areas of the United States have reported increasing incidence of root rot with little or no crown or foliar symptoms in sugar beet with Rhizoctonia crown and root rot. In addition, Rhizoctonia-resistant beets have been reported wit...

  17. Infection of apple fruit by Sphaeropsis pyriputrescens in the orchard in relation to Sphaeropsis rot in storage

    Science.gov (United States)

    Sphaeropsis rot, caused by Sphaeropsis pyriputrescens, is a recently recognized postharvest fruit rot disease of apple in the United States. The objectives of this study were to determine the timing of apple fruit infection in the orchard in relation to development of Sphaeropsis rot in storage and ...

  18. Are white-rot fungi a real biotechnological option for the improvement of environmental health?

    Science.gov (United States)

    Tortella, G; Durán, N; Rubilar, O; Parada, M; Diez, M C

    2015-06-01

    The use of white-rot fungi as a biotechnological tool for cleaning the environment of recalcitrant pollutants has been under evaluation for several years. However, it is still not possible to find sufficiently detailed investigations of this subject to conclude that these fungi can decontaminate the environment. In the present review, we have summarized and discussed evidence about the potential of white-rot fungi to degrade such pollutants as polycyclic aromatic hydrocarbons, dyes or antibiotics as an example of the complex structures that these microorganisms can attack. This review also discusses field experiment results and limitations of white-rot fungi trials from contaminated sites. Moreover, the use of catabolic potential of white-rot fungi in biopurification systems (biobeds) is also discussed. The current status and future perspectives of white-rot fungi, as a viable biotechnological alternative for improvement of environmental health are noted.

  19. Autochthonous bioaugmentation with environmental samples rich in hydrocarbonoclastic bacteria for bench-scale bioremediation of oily seawater and desert soil.

    Science.gov (United States)

    Ali, Nedaa; Dashti, Narjes; Salamah, Samar; Al-Awadhi, Husain; Sorkhoh, Naser; Radwan, Samir

    2016-05-01

    Oil-contaminated seawater and desert soil batches were bioaugmented with suspensions of pea (Pisum sativum) rhizosphere and soil with long history of oil pollution. Oil consumption was measured by gas-liquid chromatography. Hydrocarbonoclastic bacteria in the bioremediation batches were counted using a mineral medium with oil vapor as a sole carbon source and characterized by their 16S ribosomal RNA (rRNA)-gene sequences. Most of the oil was consumed during the first 2-4 months, and the oil-removal rate decreased or ceased thereafter due to nutrient and oxygen depletion. Supplying the batches with NaNO3 (nitrogen fertilization) at a late phase of bioremediation resulted in reenhanced oil consumption and bacterial growth. In the seawater batches bioaugmented with rhizospheric suspension, the autochthonous rhizospheric bacterial species Microbacterium oxidans and Rhodococcus spp. were established and contributed to oil-removal. The rhizosphere-bioaugmented soil batches selectively favored Arthrobacter nitroguajacolicus, Caulobacter segnis, and Ensifer adherens. In seawater batches bioaugmented with long-contaminated soil, the predominant oil-removing bacterium was the marine species Marinobacter hydrocarbonoclasticus. In soil batches on the other hand, the autochthonous inhabitants of the long-contaminated soil, Pseudomonas and Massilia species were established and contributed to oil removal. It was concluded that the use of rhizospheric bacteria for inoculating seawater and desert soil and of bacteria in long-contaminated soil for inoculating desert soil follows the concept of "autochthonous bioaugmentation." Inoculating seawater with bacteria in long-contaminated soil, on the other hand, merits the designation "allochthonous bioaugmentation."

  20. Bacteriophages of Soft Rot Enterobacteriaceae-a minireview.

    Science.gov (United States)

    Czajkowski, Robert

    2016-01-01

    Soft rot Enterobacteriaceae (Pectobacterium spp. and Dickeya spp., formerly pectinolytic Erwinia spp.) are ubiquitous necrotrophic bacterial pathogens that infect a large number of different plant species worldwide, including economically important crops. Despite the fact that these bacteria have been studied for more than 50 years, little is known of their corresponding predators: bacteriophages, both lytic and lysogenic. The aim of this minireview is to critically summarize recent ecological, biological and molecular research on bacteriophages infecting Pectobacterium spp. and Dickeya spp. with the main focus on current and future perspectives in that field.

  1. MtDNA diversity among four Portuguese autochthonous dog breeds: a fine-scale characterisation

    Directory of Open Access Journals (Sweden)

    Santa-Rita Pedro

    2005-06-01

    Full Text Available Abstract Background The picture of dog mtDNA diversity, as obtained from geographically wide samplings but from a small number of individuals per region or breed, has revealed weak geographic correlation and high degree of haplotype sharing between very distant breeds. We aimed at a more detailed picture through extensive sampling (n = 143 of four Portuguese autochthonous breeds – Castro Laboreiro Dog, Serra da Estrela Mountain Dog, Portuguese Sheepdog and Azores Cattle Dog-and comparatively reanalysing published worldwide data. Results Fifteen haplotypes belonging to four major haplogroups were found in these breeds, of which five are newly reported. The Castro Laboreiro Dog presented a 95% frequency of a new A haplotype, while all other breeds contained a diverse pool of existing lineages. The Serra da Estrela Mountain Dog, the most heterogeneous of the four Portuguese breeds, shared haplotypes with the other mainland breeds, while Azores Cattle Dog shared no haplotypes with the other Portuguese breeds. A review of mtDNA haplotypes in dogs across the world revealed that: (a breeds tend to display haplotypes belonging to different haplogroups; (b haplogroup A is present in all breeds, and even uncommon haplogroups are highly dispersed among breeds and continental areas; (c haplotype sharing between breeds of the same region is lower than between breeds of different regions and (d genetic distances between breeds do not correlate with geography. Conclusion MtDNA haplotype sharing occurred between Serra da Estrela Mountain dogs (with putative origin in the centre of Portugal and two breeds in the north and south of the country-with the Castro Laboreiro Dog (which behaves, at the mtDNA level, as a sub-sample of the Serra da Estrela Mountain Dog and the southern Portuguese Sheepdog. In contrast, the Azores Cattle Dog did not share any haplotypes with the other Portuguese breeds, but with dogs sampled in Northern Europe. This suggested that the

  2. Autochthonous microbe-assisted phytoremediation of brown coal mine overburden soil

    Science.gov (United States)

    Hamidović, Saud; Teodorović, Smilja; Lalević, Blažo; Karličić, Vera; Jovanović, Ljubinko; Kiković, Dragan; Raičević, Vera

    2015-04-01

    One of the largest brown coal mines in Bosnia and Herzegovina (BiH), Kakanj, has been exploited for over a hundred years. As a consequence of decades of exploitation, severe biocenosis disturbance and degradation of the entire ecosystem have occurred, resulting in overburden soil formation. A significant challenge in remediation of degraded mining areas is difficulty in creating conditions favorable for vegetation growth. Thus, numerous remediation technologies have focused on increasing soil nutrient composition, as well as the number and activity of plant growth-promoting bacteria (PGPB), given that they stimulate host plant growth by increasing the availability of essential nutrients (phosphorus, nitrogen, manganese, iron), producing phytohormones, and providing protection from pathogens. The main objective of this research was to characterize autochthonous plant and microbial overburden communities and access their ability to restore these contaminated soils. Phytocenological analysis of vegetation and plant species was performed according to Flora Europaea (2001), from 2011 - 2013. Our results show that plant species were not detected at mine overburden soil in 2011. However, we detected presence of a single plant species, Amaranthus albus L., in 2012. Further, we recorded the presence of five families (Amaranthaceae, Chenopodiaceae, Convolvulaceae, Poaceae and Polygonaceae) in 2013. Microbial abundance and enzymatic activity were also examined during the same period. The diversity of microbial populations in the first year was rather small. Two Bacillus spp., B. simplex and a B. cereus group member, indigenous to mine overburden were isolated and identified using standard macroscopic and microscopic, as well as molecular techniques (Hamidovic et al., submitted). Phosphate solubilizing activity of bacteria was tested on National Botanical Research Institute's phosphate growth medium (1999). Production of ammonia was determined in peptone water with Nessler

  3. Characterization of Carbapenem-Resistant Enterobacteriaceae with High Rate of Autochthonous Transmission in the Arabian Peninsula.

    Directory of Open Access Journals (Sweden)

    Ágnes Sonnevend

    Full Text Available To establish the role of local transmission versus possible pathogen import due to previous foreign exposure in infections caused by carbapenem non-susceptible Enterobacteriaceae in the Arabian Peninsula, 200 independent isolates collected in 16 hospitals of Saudi Arabia, Kuwait, Oman and the United Arab Emirates were studied. All strains were multidrug resistant; 42.5% of them also qualified as extremely drug resistant. The frequency of various carbapenemases varied according to the participating countries, but in the collection, as a whole, blaNDM-1 was the most frequently encountered carbapenemase gene (46.5% followed by blaOXA-48-like gene (32.5%. A comparatively high rate (8.9% of multi-clonal strains carrying both blaNDM and blaOXA-48-like genes in the United Arab Emirates, representing the most resistant subgroup, was encountered. No KPC-expressing isolates were detected. Three major clones of blaNDM-1 carrying Klebsiella pneumoniae of ST152 (n = 22, Saudi Arabia, ST14 (n = 7, United Arab Emirates and ST147 types (n = 9, Oman were identified, the latter two clones carrying similar, but not identical HI1b incompatibility type plasmids of >170 kb. While from 78.6% of the cases with documented foreign hospitalization blaNDM positive strains were isolated, these strains formed only 25.6% of all the isolates expressing this enzyme. In fact, 56.8% of the NDM, 75.7% of OXA-48-like and 90.9% of VIM positive strains were recovered from patients without documented foreign exposure, neither in the form of travel or prior hospitalization abroad, suggesting a high rate of autochthonous infections. This, considering the extensive links of these countries to the rest of the world, predicts that trends in the local epidemiology of carbapenem resistant strains may increasingly affect the spread of these pathogens on the global scale. These results call for improved surveillance of carbapenem resistant Enterobacteriaceae in the countries of the Arabian

  4. [Epidemic of autochthonous hepatic and intestinal amebiasis in a place near Grenoble].

    Science.gov (United States)

    Ambroise-Thomas, P; Goullier, A; Grillot, R; Lascaud, D; Rivoire, L; Perrin, Y

    1975-01-01

    We had the opportunity of studying an epidemic of autochthonous amoebiasis occurring in the autumn of 1974 in a small town of 4000 inhabitants 30 km from Grenoble. Attention was originally attracted by the occurrence in this town of two cases of hepatic amoebiasis and one of intestinal amoebiasis identified by rectoscopy. Systematic investigations (coproctic examinations and serological tests for amoebiasis by indirect antibody fluorescence) were then carried out on everyone in the locality with digestive disorders which were possibly referable to amoebiasis, and on the other members of their families. A total number of 148 coproctic examinations were made and in two cases revealed the presence of vegetative forms of Entamoeba histolytica. In both cases the infestation provoked few symptoms (asthenia, vague abdominal discomfort, intermittent and apparently banal diarrhoea). On the other hand 20 out of 94 serological tests revealed positive results, 14 of which were equal to or greater than a titre of 1/100, a level at which all risks of non-specificity are virtually ruled out under our experimental conditions. Material reasons made it impossible to subject these cases to repeated faecal checks, but in two of them at least the rectoscopic appearances were very suggestive of subacute intestinal amoebiasis. Moreover, amoebic disease appears to be well confirmed by the results obtained among the patients as a whole by treatment with Metroinidazole. A variety of hypotheses on the origin of this epidemic have been put forward and then abandoned (market garden produce, receipt by certain families of exotic frut from overseas). In actual fact water seems to be the point of departure, for, although specimens of water taken at 7 different levels in the water supply system failed to reveal the presence of a single amoeba, bacteriological analyses during autumn 1974 showed signs of faecal contamination. The locality, which is situated at the foot of the Chartreuse massif

  5. Enzyme production by wood-rot and soft-rot fungi cultivated on corn fiber followed by simultaneous saccharification and fermentation.

    Science.gov (United States)

    Shrestha, Prachand; Khanal, Samir K; Pometto, Anthony L; van Leeuwen, J Hans

    2009-05-27

    This research aims at developing a biorefinery platform to convert lignocellulosic corn fiber into fermentable sugars at a moderate temperature (37 °C) with minimal use of chemicals. White-rot (Phanerochaete chrysosporium), brown-rot (Gloeophyllum trabeum), and soft-rot (Trichoderma reesei) fungi were used for in situ enzyme production to hydrolyze cellulosic and hemicellulosic components of corn fiber into fermentable sugars. Solid-substrate fermentation of corn fiber by either white- or brown-rot fungi followed by simultaneous saccharification and fermentation (SSF) with coculture of Saccharomyces cerevisiae has shown a possibility of enhancing wood rot saccharification of corn fiber for ethanol fermentation. The laboratory-scale fungal saccharification and fermentation process incorporated in situ cellulolytic enzyme induction, which enhanced overall enzymatic hydrolysis of hemi/cellulose components of corn fiber into simple sugars (mono-, di-, and trisaccharides). The yeast fermentation of the hydrolyzate yielded 7.8, 8.6, and 4.9 g ethanol per 100 g corn fiber when saccharified with the white-, brown-, and soft-rot fungi, respectively. The highest ethanol yield (8.6 g ethanol per 100 g initial corn fiber) is equivalent to 35% of the theoretical ethanol yield from starch and cellulose in corn fiber. This research has significant commercial potential to increase net ethanol production per bushel of corn through the utilization of corn fiber. There is also a great research opportunity to evaluate the remaining biomass residue (enriched with fungal protein) as animal feed.

  6. Peaches tree genetic divergence for brown rot reaction

    Directory of Open Access Journals (Sweden)

    Américo Wagner Júnior

    2011-10-01

    Full Text Available It was evaluated the genetic divergence in peach genotypes for brown rot reaction. It was evaluated 26 and 29 peach genotypes in the 2009/2010 and 2010/2011 production cycle, respectively. The experiment was carried out at the Laboratório de Fitossanidade, da UTFPR - Campus Dois Vizinhos. The experimental design was entirely randomized, considering each peach genotype a treatment, and it was use three replication of nine fruits. The treatment control use three replication of three peach. The fruit epidermis were inoculated individually with 0.15 mL of M. fructicola conidial suspension (1.0 x 10(5 spores mL-1. In the control treatment was sprayed with 0.15 mL of distilled water. The fruits were examined 72 and 120 hours after inoculation, and the incidence and severity disease were evaluated. These results allowed realized study for genetic divergence, used as dissimilarity measure the Generalized Mahalanobis distance. Cluster analysis using Tocher´s optimization method and distances in the plan were applied. There was smallest genetic divergence among peach trees evaluated for brown rot, what can difficult to obtain resistance in the genotypes.

  7. Transforming Fabry-Pérot resonances into a Tamm mode

    Science.gov (United States)

    Durach, Maxim; Rusina, Anastasia

    2012-12-01

    We propose an optical structure composed of two metal nanolayers enclosing a distributed Bragg reflector (DBR) mirror. The structure is an open photonic system whose bound modes are coupled to external radiation. We apply the special theoretical treatment based on inversion symmetry of the structure to classify its resonances. We show that the structure supports resonances transitional between Fabry-Pérot modes and Tamm plasmons. When the dielectric contrast of the DBR is removed these modes are a pair of conventional Fabry-Pérot resonances. They spectrally merge into a Tamm mode at high contrast. The optical properties of the structure in the frequency range of the DBR stop band, including highly beneficial 50% transmittivity through thick structures with sub-skin-depth metal films, are determined by the hybrid quasinormal modes of the open nonconservative structure under consideration. The results can find a broad range of applications in photonics and optoelectronics, including the possibility of coherent control over optical fields in the class of structures similar to the one proposed here.

  8. Inhibition of Listeria monocytogenes and Escherichia coli O157:H7 in liquid broth medium and during processing of fermented sausage using autochthonous starter cultures.

    Science.gov (United States)

    Pragalaki, T; Bloukas, J G; Kotzekidou, P

    2013-11-01

    The antimicrobial effect of two autochthonous starter cultures of Lactobacillus sakei was evaluated in vitro (in liquid broth medium) and in situ assays. The inactivation of foodborne pathogens Listeria monocytogenes (serotype 4ab No 10) and Escherichia coli O157:H7 ATCC 43888 was investigated during the production of fermented sausage according to a typical Greek recipe using L. sakei strains as starter cultures. The inactivation kinetics were modeled using GInaFiT, a freeware tool to assess microbial survival curves. By the end of the ripening period, the inhibition of L. monocytogenes was significant in treatments with L. sakei 8416 and L. sakei 4413 compared to the control treatment. A 2.2-log reduction of the population of E. coli O157:H7 resulted from the autochthonous starter culture L. sakei 4413 during sausage processing. The use of the autochthonous starter cultures constitutes an additional improvement to the microbial safety by reducing foodborne pathogens.

  9. From grape berries to wine: population dynamics of cultivable yeasts associated to "Nero di Troia" autochthonous grape cultivar.

    Science.gov (United States)

    Garofalo, Carmela; Tristezza, Mariana; Grieco, Francesco; Spano, Giuseppe; Capozzi, Vittorio

    2016-04-01

    The aim of this work was to study the biodiversity of yeasts isolated from the autochthonous grape variety called "Uva di Troia", monitoring the natural diversity from the grape berries to wine during a vintage. Grapes were collected in vineyards from two different geographical areas and spontaneous alcoholic fermentations (AFs) were performed. Different restriction profiles of ITS-5.8S rDNA region, corresponding to Saccharomyces cerevisiae, Issatchenkia orientalis, Metschnikowia pulcherrima, Hanseniaspora uvarum, Candida zemplinina, Issatchenkia terricola, Kluyveromyces thermotolerans, Torulaspora delbrueckii, Metschnikowia chrysoperlae, Pichia fermentans, Hanseniaspora opuntiae and Hanseniaspora guilliermondii, were observed. The yeast occurrences varied significantly from both grape berries and grape juices, depending on the sampling location. Furthermore, samples collected at the end of AF revealed the great predominance of Saccharomyces cerevisiae, with a high intraspecific biodiversity. This is the first report on the population dynamics of 'cultivable' microbiota diversity of "Uva di Troia" cultivar from the grape to the corresponding wine ("Nero di Troia"), and more general for Southern Italian oenological productions, allowing us to provide the basis for an improved management of wine yeasts (with both non-Saccharomyces and Saccharomyces) for the production of typical wines with desired unique traits. A certain geographical-dependent variability has been reported, suggesting the need of local based formulation for autochthonous starter cultures, especially in the proportion of the different species/strains in the design of mixed microbial preparations.

  10. A new definition of health? An open letter of autochthonous peoples and medical anthropologists to the WHO.

    Science.gov (United States)

    Charlier, P; Coppens, Y; Malaurie, J; Brun, L; Kepanga, M; Hoang-Opermann, V; Correa Calfin, J A; Nuku, G; Ushiga, M; Schor, X E; Deo, S; Hassin, J; Hervé, C

    2017-01-01

    Currently, for many practitioners (hospital and liberals) and researchers (including public health), the WHO definition of health is outdated: first it seems more utopian than pragmatic; then, it proves unsuitable for a large part of the world population. There is clearly a need to refine this definition or propose additional criteria to be more relevant or discriminating. In this perspective, what can indigenous people offer in the elaboration of a new definition of health? In this article, leaders or representatives of autochthonous peoples, anthropologists and physicians from many cultural origins (Amazonia, Patagonia, Papua New-Guinea, Inuit, North-American Indian, sub-Saharan Africa, India, China, Melanesia and Polynesia) have tried to identify and explain several key concepts that WHO should reintegrate into its new definition of health: human equilibrium in nature, accepted spirituality and adaptation. On the sidelines of the application of COP21 decisions that should give back to man his place into the environment, autochthonous people leaders, anthropologists and MDs explain why these three concepts are fundamental and universal health determinants, and need to be included in a new WHO definition of health.

  11. Behavior of Staphylococcus aureus and autochthone microbiota in fresh sausages added of sodium nitrite and stored under refrigeration

    Directory of Open Access Journals (Sweden)

    Lucyanne Maria Moraes Correia

    2014-10-01

    Full Text Available Fresh sausages are cured meat products that may be contaminated with Staphylococcus aureus during the manufacturing procedure, which is frequently related with inadequate handling practices. The use of nitrite in meat products has proven efficacy against Clostridium botulinum, and studies indicate that bactericidal action against S. aureus depends on factors that are intrinsic and extrinsic to the product. The objective of the present study was to evaluate the effect of nitrite concentration, and pH on S. aureus and psychrotrophic autochthone microbiota in fresh sausages stored at different times and temperatures. Fresh sausage were produced at nitrite concentrations 50, 150 and 200ppm and contaminated with S. aureus. The sausages were storage at refrigeration (7 and 12°C and the quantification of S. aureus and psychrotrophic microorganisms was carried out on days 0, 2, 4, 7, and 10. Results showed that nitrite concentrations and the temperatures used had minimal effect on the multiplication of S. aureus and psychrotrophic autochthone microbiota. Final counts depended only on the length of storage: at the end of 10 days, counts were statistically similar in the different groups, showing that temperature and nitrite concentrations used did not control microbial growth effectively. It is suggested that the product should be stored below 7°C or at freezing temperatures for greater microbiological stability

  12. Citrus Black Rot is Caused by Phylogenetically Distinct Lineages of Alternaria alternata.

    Science.gov (United States)

    Peever, T L; Carpenter-Boggs, L; Timmer, L W; Carris, L M; Bhatia, A

    2005-05-01

    ABSTRACT Phylogenetic analysis revealed that isolates of Alternaria alternata causing black rot of citrus were associated with six well-supported evolutionary lineages. Isolates recovered from brown spot lesions on Minneola tangelo, leaf spot lesions on rough lemon, and healthy citrus tissue and noncitrus hosts were related closely to isolates from black-rotted fruit. Phylogenies estimated independently from DNA sequence data from an endopolygalacturonase gene (endoPG) and two anonymous regions of the genome (OPA1-3 and OPA2-1) had similar topologies, and phylogenetic analysis was performed on the combined data set. In the combined phylogeny, isolates from diverse ecological niches on citrus and noncitrus hosts were distributed in eight clades. Isolates from all lineages, regardless of ecological or host association, caused black rot in fruit inoculation assays, demonstrating that small-spored Alternaria isolates associated with different ecological niches on citrus and other plant hosts are potential black rot pathogens. These data also indicated that the fungi associated with black-rotted fruit do not form a natural evolutionary group distinct from other Alternaria pathogens and saprophytes associated with citrus. The use of the name A. citri to describe fungi associated with citrus black rot is not justified and it is proposed that citrus black rot fungi be referred to as A. alternata.

  13. Brown rot on nuts of Castanea sativa Mill: an emerging disease and its causal agent

    Directory of Open Access Journals (Sweden)

    Maresi G

    2013-07-01

    Full Text Available The quality and quantity of nut production are fundamental to the economic viability of chestnut cultivation, yet recent reports indicate that severe damage due to moulds represents a significant problem for growers. We carried out an investigation of the agents of chestnut rot and internal fruit damage in three orchards in Italy. Black and brown rot, as well as insect damage, were found in all the areas examined. Brown rot appeared to be the main cause of damage, affecting 8% to 49% and 2% to 24% of nuts collected from the ground and from burrs, respectively. With respect to morphology and DNA sequencing analyses, fungal isolates obtained from brown rot were homologous with Gnomoniopsis sp. obtained from Dryocosmus kuriphilus (Yasumatsu galls and with Gnomoniopsis castanea and Gnomoniopsis smithogilvyi described on chestnut in Italy and Australia, respectively. The same fungus was also isolated from the bark of one- and two-years-old healthy shoots at each site, supporting the endophytic behaviour of this rot agent. Brown rot symptoms on nuts associated with Gnomoniopsis sp. corresponded with those previously described by several authors and referred to as Phoma or Phomopsis endogena, suggesting a relationship between these fungi and Gnomoniopsis sp. It is to notice that the escalation of brown rot damage in Italy followed several periods of drought and probably the recent invasion of D. kuriphilus, both stress factors for chestnut trees.

  14. Potential of non-ligninolytic fungi in bioremediation of chlorinated and polycyclic aromatic hydrocarbons.

    Science.gov (United States)

    Marco-Urrea, Ernest; García-Romera, Inmaculada; Aranda, Elisabet

    2015-12-25

    In previous decades, white-rot fungi as bioremediation agents have been the subjects of scientific research due to the potential use of their unspecific oxidative enzymes. However, some non-white-rot fungi, mainly belonging to the Ascomycota and Zygomycota phylum, have demonstrated their potential in the enzymatic transformation of environmental pollutants, thus overcoming some of the limitations observed in white-rot fungi with respect to growth in neutral pH, resistance to adverse conditions and the capacity to surpass autochthonous microorganisms. Despite their presence in so many soil and water environments, little information exists on the enzymatic mechanisms and degradation pathways involved in the transformation of hydrocarbons by these fungi. This review describes the bioremediation potential of non-ligninolytic fungi with respect to chlorinated hydrocarbons and polycyclic aromatic hydrocarbons (PAHs) and also shows known conversion pathways and the prospects for future research.

  15. Genetic and pathological characteristics of Cryptococcus gattii and Cryptococcus neoformans var. neoformans from meningoencephalitis in autochthonous goats and mouflons, Sardinia, Italy.

    Science.gov (United States)

    Maestrale, Caterina; Masia, Mariangela; Pintus, Davide; Lollai, Stefano; Kozel, Thomas R; Gates-Hollingsworth, Marcellene A; Cancedda, Maria Giovanna; Cabras, Pierangela; Pirino, Salvatore; D'Ascenzo, Vittoria; Ligios, Ciriaco

    2015-06-12

    In this study, we examined in Sardinia the brain of 555 autochthonous sheep, 50 goats, and 4 mouflons which were found affected by neurological signs. We found 6 goats and one mouflon with meningoencephalitis caused by Cryptococcus sp. There was no evidence of cryptococcal infections in any of the examined sheep. MLST genotyping on Cryptococcus sp. isolates identified Cryptococcus gatti genotype AFLP4/VGI and Cryptococcus neoformans var. neoformans genotype AFLP2/VNIV. Phylogenetically, all Cryptococcus gattii isolates fell within the autochthonous animal, human and environmental Mediterranean isolate cluster, forming a distinct branch along with environmental strains from Alicante, in the southern Mediterranean coast of Spain.

  16. Releasing nitrogen from ammoniated lignin by white rot fungus cometabolizes environmental pollutants

    Institute of Scientific and Technical Information of China (English)

    LIN Lu; ZHAO De-qing; ZHOU Xian-tao; QIU Yu-gui; ZHANG Gan

    2003-01-01

    The nitrogen-modified lignocelluloses(NML) produced under oxic ammoniation was metabolized by white rot fungus, NH4+-N was released, NO3--N concentration was decreased and total nitrogen loss was blocked within incubation period. During releasing nitrogen from the metabolism of NML, white rot fungus cometabolized recalcitrant environmental pollutants and showed higher degradation capability. Results indicated that this NML complex colonized by white rot fungus might be effective with economic feasibility when they are applied into the vast field ecosystem, it might stabilize NH4+ nitrogen flux and bioremediate the polluted environmental sites.

  17. Variation in oxalate and oxalate decarboxylase production by six species of brown and white rot fungi

    DEFF Research Database (Denmark)

    Hastrup, Anne Christine Steenkjær; Oliver, Jason; Howell, Caitlin;

    cell lumen where it quickly dissociates into hydrogen ions and oxalate, resulting in a pH decrease of the environment, and oxalate-cation complexes. Generally, brown rot fungi accumulate larger quantities of oxalic acid in the wood than white rot fungi. The amount of oxalic acid has been shown to vary...... of formic acid and CO2 (Makela et al., 2002). So far only a few species of brown rot fungi have been shown to accumulate this enzyme (Micales, 1995, Howell and Jellison, 2006).   The purpose of this study was to investigate the variation in the levels of soluble oxalate and total oxalate, in correlation...

  18. Saturnispora bothae sp. nov., isolated from rotting wood.

    Science.gov (United States)

    Morais, Camila G; Lara, Carla A; Borelli, Beatriz M; Cadete, Raquel M; Moreira, Juliana D; Lachance, Marc-André; Rosa, Carlos A

    2016-10-01

    Two strains representing a novel species of the genus Saturnispora were isolated from rotting wood samples collected in an Atlantic Rainforest site in Brazil. Analyses of the sequences of the D1/D2 domains of the rRNA gene showed that this novel species belongs to a subclade in the Saturnispora clade formed by Saturnispora sanitii, Saturnispora sekii, Saturnispora silvae and Saturnisporasuwanaritii. The novel species differed in D1/D2 sequences by 60 or more nucleotide substitutions from these species. The strains produced asci with one to four hemispherical ascospores. A novel species named Saturnispora bothae sp. nov. is proposed to accommodate these isolates. The type strain is UFMG-CM-Y292T (=CBS 13484T). The MycoBank number is MB 817127.

  19. Comparison of ligninolytic activities of selected white-rot fungi

    Energy Technology Data Exchange (ETDEWEB)

    Waldner, R.; Leisola, M.S.A.; Fiechter, A.

    1988-10-01

    Six fast growing ligninolytic white-rot fungi were compared with Phanerochaete chrysosporium. The results showed that the fungi have similar ligninolytic systems, although minor differences exist. Like in P. chrysosporium the ligninolytic system could be induced by veratryl alcohol in Coriolus versicolor and Chrysosporium pruinosum. These three lignin peroxidase producing fungi were the fastest lignin degraders in stationary cultures, whereas in agitated cultures Bjerkandera adusta showed highest lignin degradation rates. Metabolites accumulating during the degradation of veratryl alcohol were analyzed and compared. Peroxidase production seems to be a common feature of all the tested fungi. Polyclonal antibodies against the lignin peroxidase with pl of 4.65 from P. chrysosporium reacted with the extracellular peroxidases of C. pruinosum, C. versicolor and B. adusta, but not with those of Pleurotus ostreatus.

  20. Resistance to Fusarium dry root rot disease in cassava accessions

    Directory of Open Access Journals (Sweden)

    Saulo Alves Santos de Oliveira

    2013-10-01

    Full Text Available The objective of this work was to identify sources of resistance to dry root rot induced by Fusarium sp. in cassava accessions. A macroconidial suspension (20 µL of 11 Fusarium sp. isolates was inoculated in cassava roots, from 353 acessions plus seven commercial varieties. Ten days after inoculation, the total area colonized by the pathogen on the root pulp was evaluated by digital image analysis. Cluster analysis revealed the presence of five groups regarding resistance. The root lesion areas ranged from 18.28 to 1,096.07 mm² for the accessions BGM 1518 and BGM 556, respectively. The genotypes BGM 1042, BGM 1552, BGM 1586, BGM 1598, and BGM 1692 present the best agronomical traits.

  1. Synthetic dye decolorization capacity of white rot fungus Dichomitus squalens.

    Science.gov (United States)

    Eichlerová, Ivana; Homolka, Ladislav; Nerud, Frantisek

    2006-11-01

    The ability to decolorize eight chemically different synthetic dyes (Orange G, Amaranth, Orange I, Remazol Brilliant Blue R (RBBR), Cu-phthalocyanin, Poly R-478, Malachite Green and Crystal Violet) by the white rot fungus Dichomitus squalens was evaluated on agar plates. The fungus showed high decolorization capacity and was able to decolorize all dyes tested, but not to the same extent. Some of the dyes did not limit the decolorization capacity of the strain tested even at a concentration of 2g/l. The presence of the dyes in solid media reduced the mycelial growth rate of D. squalens; a positive correlation was found between the growth rate and the decolorization ability. Decolorization of Orange G and RBBR was studied also in liquid culture, where both dyes caused an enhancement of ligninolytic enzyme and overall hydrogen peroxide production and a decrease of biomass production. RBBR was removed to a higher extent than Orange G.

  2. Production of a biocontrol agent for crucifers black rot disease

    Directory of Open Access Journals (Sweden)

    C.L. Luna

    2002-04-01

    Full Text Available Of nine epiphytic isolates of the genus Bacillus, only B. subtilis R14, B. pumilus C116, B. megaterium pv. cerealis RAB7, and B. cereus C210 showed antibiotic activity when tested in vitro against the bacterium Xanthomonas campestris pv. campestris LFR-3. Aiming product a biocontrol agent for black rot in crucifers, the production of B. subtilis R14 was evaluated in a batch bioreactor. Rapid growth was observed in a medium containing molasses and yeast extract as C-source and N-source, respectively. During the exponential growth phase, the specific growth rate was 1.2 h-1. A quick sporulation was also observed in a C/N well-balanced medium. After the sporulation phase, maximum viable spore concentrations around 10(9 CFU/mL were obtained. Preliminary sedimentation tests at different pH values showed better biomass separation efficiencies at low pH values.

  3. Post-Triassic para-autochthoneity of the Yukon-Tanana Terrane: paleomagnetism of the Early Cretaceous Quiet Lake batholith

    Science.gov (United States)

    Symons, D. T. A.; McCausland, P. J. A.; Kawasaki, K.; Hart, C. J. R.

    2015-10-01

    Was the Yukon-Tanana Terrane (YTT), a California-sized part of south-central Yukon, an autochthonous or para-autochthonous part of northern British Columbia in the Early Cretaceous or was it part of a proposed allochthonous `Baja B.C.' continent offshore of southern California? To answer this fundamental question, a paleomagnetic study has been completed on 347 specimens from 24 sites in the 114.7 ± 1.1 Ma Quiet Lake batholith. This 1300 km2 pluton is composed mostly of massive medium-to-coarse grained biotite quartz monzonite that exhibits no evidence of either deformation or metamorphism, and that intrudes metamorphosed pre-Cretaceous basement rocks of the YTT in southern Yukon. The paleomagnetic analysis utilized thermal and alternating field step demagnetization, and saturation isothermal remanence methods. A well-defined characteristic remanent magnetization (ChRM) direction was isolated throughout the 500-585 °C temperature range at Decl. = 340.6°, Incl. = 77.4° (N = 14 sites, k = 51.2, A95 = 5.6°). The ChRM resides in magnetite with a low titanium content and is interpreted to be a primary thermoremanent magnetization. After correction for 490 km of geologically demonstrable dextral displacement on the inboard Tintina fault zone, the Quiet Lake batholith's paleopole is not significantly different at 95 per cent confidence from the co-eval 115 Ma reference paleopole for North America, giving non-significant translation and rotation estimates of 1.4° ± 5.1° (1σ) northwestwards and 10° ± 13° (1σ) clockwise, respectively. Thus, this is the first Early Cretaceous paleopole to show clearly that the YTT in Yukon is a para-autochthon that was part of North America's continental margin at that time. Further, after correction for Tintina fault displacement, the eight available Mesozoic YTT paleopoles agree closely with the North American apparent polar wander path (APWP). In contrast, the 22 paleopoles from the Intermontane Belt show the expected

  4. Fungi associated with post-harvest rot of black plum (Vitex doniana) in Nigeria.

    Science.gov (United States)

    Eseigbe, D A; Bankole, S A

    The fungi associated with rot of Vitex doniana fruits (blackplum) were isolated and identified. Aspergillus niger, Botryodiplodia theobromae, Candida spp. Penicillium chrysogenum, Rhizopus stolonifer, Fusarium pallidoroseum F. oxysporum and Mucor mucedo were the primary rot causing fungi in contrast to Cladosporium herbarum and Mucor circinelloides which were just present as secondary colonizers. The rot fungi penetrated mainly through wounds and bruises on the surface of fruits. Mature green fruits were less susceptible to infection than half ripe and fully ripened red fruits. Optimum rot by pathogenic isolates occurred at 25-30 degrees C and relative humidity 72.5-100%. The results of investigation of influence of storage temperatures and relative humidity on the quality of uninoculated healthy fruits are presented and discussed.

  5. Leuconostoc spp. Associated with Root Rot in Sugar Beet and Their Interaction with Rhizoctonia solani.

    Science.gov (United States)

    Strausbaugh, Carl A

    2016-05-01

    Rhizoctonia root and crown rot is an important disease problem in sugar beet caused by Rhizoctonia solani and also shown to be associated with Leuconostoc spp. Initial Leuconostoc studies were conducted with only a few isolates and the relationship of Leuconostoc with R. solani is poorly understood; therefore, a more thorough investigation was conducted. In total, 203 Leuconostoc isolates were collected from recently harvested sugar beet roots in southern Idaho and southeastern Oregon during 2010 and 2012: 88 and 85% Leuconostoc mesenteroides, 6 and 15% L. pseudomesenteroides, 2 and 0% L. kimchi, and 4 and 0% unrecognized Leuconostoc spp., respectively. Based on 16S ribosomal RNA sequencing, haplotype 11 (L. mesenteroides isolates) comprised 68 to 70% of the isolates in both years. In pathogenicity field studies with commercial sugar beet 'B-7', all Leuconostoc isolates caused more rot (P rot (P rot when both Leuconostoc spp. and R. solani are present in sugar beet roots.

  6. CHARACTERIZATION OF WOOD DECAY BY ROT FUNGI USING COLORIMETRY AND INFRARED SPECTROSCOPY

    Directory of Open Access Journals (Sweden)

    Mírian de Almeida Costa

    2011-09-01

    Full Text Available Wood samples of marupá (Simarouba amara and andiroba (Carapa guianenis were submitted to Trametes versicolor (white rot and Gloeophylum trabeum (brown rot fungi attack. Colorimetry was used to determine the color of the wood before and after wood decaying fungi. To evaluate the changes in chemical compounds levels in the wood samples, the diffuse reflectance medium infrared spectroscopy was used. Both wood were non resistant against white rot fungus, while with brown rot attack andiroba was resistant and marupá was not. After Gloeophyllum trabeum attack both woods changed to a darken color, and after Trametes versicolor attack andiroba changed to a lighter color and marupá darkened slightly, The analysis showed a reduction in the peak intensity of cellulose, hemicellulose and lignin, for both species, after Trametes versicolor attack and a reduction in the peak intensity of cellulose after Gloeophyllum trabeum attack.

  7. Field Efficiency Trial of 72% Streptomycin against Konjac Bacterial Soft Rot

    Institute of Scientific and Technical Information of China (English)

    Huang; Yongsheng; Li; Xiaojun; Zhu; Shijin; Ma; Yongsheng; Wang; Li

    2014-01-01

    72% Streptomycin soluble powder was used to control konjac bacterial soft rot in the study. The control efficiency and yield of different treatments were investigated,and the benefit was analyzed. The control scheme against konjac bacterial soft rot was as follows: spraying 72% atreptomycinon twice on rotation fields after all the seedlings were strong and uniform,or irrigating roots with 72% atreptomycinon once and spraying twice on continuous cropping fields.

  8. No Reported Species, Botrytis aclada Causing Gray Mold Neck Rot Disease on Onion Bulbs in Korea

    OpenAIRE

    Hwang, Sun–Kyoung; Lee, Seung–Yeol; Back, Chang–Gi; Kang, In–Kyu; Lee, Hyang–Burm; Jung, Hee-Young; Ohga, Shoji; Oga, Shoji

    2016-01-01

    Gray mold neck rot was observed on onion bulbs (Allium cepa L.) in low–temperature warehouses in Changnyeong–gun, Korea. The causative pathogen was isolated from rotted onion bulb lesions and identified as Botrytis aclada based on morphological and culture characteristics, the sequences of three nuclear genes (G3PDH, HSP60, and RPB2), and polymerase chain reaction–restriction fragment length polymorphism (PCR–RFLP) for Botrytis spp. identification. Although onion gray mold disease caused by B...

  9. First Report of Myrothecium roridum Causing Leaf and Stem Rot Disease on Peperomia quadrangularis in Korea.

    Science.gov (United States)

    Han, Kyung-Sook; Choi, Seung-Kook; Kim, Hyeong-Hwan; Lee, Sung-Chan; Park, Jong-Han; Cho, Myoung-Rae; Park, Mi-Jeong

    2014-06-01

    In 2010, symptoms of leaf and stem rot were observed on potted plants (Peperomia quadrangularis) in a greenhouse in Yongin, Korea. The causative pathogen was identified as Myrothecium roridum based on morphological data, internal transcribed spacer sequence analysis, and pathogenicity test. To our knowledge, this is the first report of M. roridum causing leaf and stem rot disease on P. quadrangularis in Korea and elsewhere worldwide.

  10. Distribution and prevalence of crown rot pathogens affecting wheat crops in southern Chile

    Directory of Open Access Journals (Sweden)

    Ernesto Moya-Elizondo

    2015-03-01

    Full Text Available Crown rot pathogens are associated with higher losses for wheat crop farmers, but information about the distribution and prevalence of these pathogens in Chile is inadequate. Distribution and prevalence of wheat (Triticum aestivum L. crown rot pathogens were examined in a survey of 48 commercial fields from December 2011 to February 2012 in southern Chile. These fields were located between Collipulli (37°56'00" S; 72°26'39" W and Purranque (40°50'30" S; 73°22'03" W. Severity of crown rot disease was determined through visual assessment of the first internode of 20 tillers obtained from each field. Incidence of crown rot pathogens per field was determined by plating the 20 tillers on Petri plates with 20% potato dextrose agar amended with lactic acid (aPDA medium. Resulting fungal colonies from monoxenic culture were identified by morphological or molecular-assisted identification. Severity of crown rot varied between 11.3% and 80% for individual fields. Culture plate analysis showed 72.2% of stems were infected with some fungus. Fusarium avenaceum, F. graminearum, and F. culmorum, pathogens associated with Fusarium crown rot disease were isolated from 13.5% of tillers. Gaeumannomyces graminis, causal agent of take-all disease in cereals, was isolated from 11.1% of culms. Phaeosphaeria sp., an endophyte and possibly a non-pathogenic fungus, was isolated from 13.9% of tillers. Pathogenic fungi such as Rhizoctonia spp. and Microdochium nivale, other saprophyte, and several unidentified non-sporulating fungi were isolated at frequencies lower than 3% of the total. Fusarium crown rot and take-all were the most prevalent and distributed crown rot diseases present in wheat crops in southern Chile.

  11. Language Contact and Language Conflict in Autochthonous Language Minority Settings in the EU: A Preliminary Round-Up of Guiding Principles and Research Desiderata

    Science.gov (United States)

    Darquennes, Jeroen

    2010-01-01

    This contribution deals with language contact and language conflict in autochthonous language minority settings in the European Union. It rounds up a number of concepts that guide macro-socio-linguistic and macrocontact-linguistic research on language minorities. The description of these concepts results in a list of research desiderata.

  12. Autochthonous cultivars of Emilia Romagna region and their clones: Comparison of the chemical and sensory properties of olive oils.

    Science.gov (United States)

    Rotondi, Annalisa; Lapucci, Chiara; Morrone, Lucia; Neri, Luisa

    2017-06-01

    The olive species (Olea europaea L.) is characterized by significant phenotypic and genetic variability the genetic matrix has a strong influence on several important extra virgin olive oil (EVOO) chemical components. Four clones from cultivars autochthonous of the Emilia Romagna region were selected for their notable performance in terms of agronomical characteristics, and the quality of the olive oil produced was studied in detail. In particular, we analyzed the fatty acid composition, the phenolic profile and the sensory analysis of the oils from these clones and compared them with the oils from the respective cultivars. Most of the new clones, all already provided with a genetic and sanitary certification, exhibited overall higher qualitative standards than the cultivars, producing monovarietal oils interesting both nutritionally and from a sensory point of view, and furthermore with a beneficial effect on health.

  13. Exploitation of sweet cherry (Prunus avium L.) puree added of stem infusion through fermentation by selected autochthonous lactic acid bacteria.

    Science.gov (United States)

    Di Cagno, Raffaella; Surico, Rosalinda Fortunata; Minervini, Giovanna; Rizzello, Carlo Giuseppe; Lovino, Raffaella; Servili, Maurizio; Taticchi, Agnese; Urbani, Sefania; Gobbetti, Marco

    2011-08-01

    Strains of Lactobacillus plantarum, Pediococcus acidilactici, Pediococcus pentosaceus and Leuconostoc mesenteroides subsp. mesenteroides were identified from 8 cultivars of sweet cherry by partial 16S rRNA gene sequence and subjected to typing by Random Amplified Polymorphic DNA-Polymerase Chain Reaction (RAPD-PCR) analysis. Representative isolates from each species and each cultivar were screened based on the kinetics of growth on cherry puree added of (10%, v/v) stem infusion (CP-SI). A protocol for processing and storage of CP-SI, which included fermentation by selected autochthonous P. pentosaceus SWE5 and L. plantarum FP3 (started CP-SI) or spontaneous fermentation (unstarted CP-SI), was set up. Starters grew and remained viable at elevated cell numbers (ca. 9.0 log cfu g(-1)) during 60 days of storage at 4 °C. The number of presumptive lactic acid bacteria of the unstarted CP-SI did not exceed the value of ca. 3.0 log cfu g(-1). Consumption of carbohydrates (e.g., glucose and fructose) by starter lactic acid bacteria was limited as well as it was the lactic acid fermentation. Consumption of organic acids (e.g., malic acid) and free amino acids was evident, especially, throughout storage. Compared to CP-SI before processing, the concentrations of total phenolic compounds and anthocyanins did not vary in the started CP-SI. The concentration of anthocyanins slightly decreased in the unstarted CP-SI. The antioxidant activity, expressed as the scavenging activity toward DPPH radical, was found at highest level in the started CP-SI which approached that found in CP-SI before processing. During storage, viscosity and, especially, color indexes of started CP-SI were higher than those found in the unstarted CP-SI. Fermentation by autochthonous lactic acid bacteria seemed to also positively interfere with the sensory attributes of CP-SI.

  14. French invasive Asian tiger mosquito populations harbor reduced bacterial microbiota and genetic diversity compared to Vietnamese autochthonous relatives

    Science.gov (United States)

    Minard, G.; Tran, F. H.; Van, Van Tran; Goubert, C.; Bellet, C.; Lambert, G.; Kim, Khanh Ly Huynh; Thuy, Trang Huynh Thi; Mavingui, P.; Valiente Moro, C.

    2015-01-01

    The Asian tiger mosquito Aedes albopictus is one of the most significant pathogen vectors of the twenty-first century. Originating from Asia, it has invaded a wide range of eco-climatic regions worldwide. The insect-associated microbiota is now recognized to play a significant role in host biology. While genetic diversity bottlenecks are known to result from biological invasions, the resulting shifts in host-associated microbiota diversity has not been thoroughly investigated. To address this subject, we compared four autochthonous Ae. albopictus populations in Vietnam, the native area of Ae. albopictus, and three populations recently introduced to Metropolitan France, with the aim of documenting whether these populations display differences in host genotype and bacterial microbiota. Population-level genetic diversity (microsatellite markers and COI haplotype) and bacterial diversity (16S rDNA metabarcoding) were compared between field-caught mosquitoes. Bacterial microbiota from the whole insect bodies were largely dominated by Wolbachia pipientis. Targeted analysis of the gut microbiota revealed a greater bacterial diversity in which a fraction was common between French and Vietnamese populations. The genus Dysgonomonas was the most prevalent and abundant across all studied populations. Overall genetic diversities of both hosts and bacterial microbiota were significantly reduced in recently established populations of France compared to the autochthonous populations of Vietnam. These results open up many important avenues of investigation in order to link the process of geographical invasion to shifts in commensal and symbiotic microbiome communities, as such shifts may have dramatic impacts on the biology and/or vector competence of invading hematophagous insects. PMID:26441903

  15. Relation between combustion heat and chemical wood composition during white and brown rot

    Energy Technology Data Exchange (ETDEWEB)

    Dobry, J.; Dziurzynski, A.; Rypacek, V.

    1986-01-01

    Samples of beech and spruce wood were incubated with the white rot fungi Pleurotus ostreatus and Lentinus tigrinus and the brown rot fungi Fomitopsis pinicola and Serpula lacrymans (S. lacrimans) for four months. Decomposition (expressed as percent weight loss) and amounts of holocellulose, lignin, humic acids (HU), hymatomelanic acids (HY) and fulvo acids (FU) were determined and expressed in weight percent. Combustion heat of holocellulose and lignin was determined in healthy wood and in specimens where decomposition was greater than 50%. During white rot decomposition, combustion heat was unchanged even at high decomposition and the relative amounts of holocellulose and lignin remained the same. Total amounts of HU, HY and FU increased during the initial stages and stabilized at 20%. The content of HU plus HY was negligible even at the highest degree of decomposition. During brown rot decomposition, combustion heat was unchanged only in the initial stages, it increased continously with increasing rot. Lignin content was unchanged in the initial stages and increased after 30% weight loss. Total amounts of HU, HY and FU increased continuously, reaching higher values than in white rot decomposition; there were differences between the two species. Biosynthesis of HU plus HY began when weight loss reached 30%; there were differences in absolute and relative amounts between species. 24 references.

  16. Root rot diseases of sugarbeet (Beta vulgaris L as affected by defloliation intensity

    Directory of Open Access Journals (Sweden)

    Karadimos Dimitros A.

    2006-01-01

    Full Text Available The aim of this work was to study the effect of sugar beet re-growth after water stress defoliation on root rots of three cultivars (Europa, Rival Corsica, which were spring sown in Thessaly, central Greece, for two growing seasons (2003-04. At the beginning of July, sugar beets were subjected to water deficit with irrigation withholding. A month later, three defoliation levels (control - C, moderate - MD, severe - SD and irrigation were applied. Thus, sugar beets were forced to re-grow and three harvests (15, 30 and 40 days after defoliation - DAD were conducted. Rotted roots per hectare were counted and pathogens were identified. Data were analyzed as a four-factor randomized complete block design with years, defoliation levels, sampling times and cultivars as main factors. The number of rotted roots was increased with the defoliation level and was significantly higher for SD sugar beets (3748 roots ha–1. No significant differences were found between C and MD treatments (1543 and 2116 roots ha–1, respectively. Rival was the most susceptible cultivar to root rots. Sugar beets were more susceptible to rotting 15 and 40 DAD (2778 and 2998 roots ha–1. The causal agents of root rots were the fungi, Fusarium spp., Rhizopus stolonifer, Macrophomina phaseolina and Rhizoctonia solani.

  17. Two genes conferring resistance to Pythium stalk rot in maize inbred line Qi319.

    Science.gov (United States)

    Song, Feng-Jing; Xiao, Ming-Gang; Duan, Can-Xing; Li, Hong-Jie; Zhu, Zhen-Dong; Liu, Bao-Tao; Sun, Su-Li; Wu, Xiao-Fei; Wang, Xiao-Ming

    2015-08-01

    Stalk rots are destructive diseases in maize around the world, and are most often caused by the pathogen Pythium, Fusarium and other fungi. The most efficient management for controlling stalk rots is to breed resistant cultivars. Pythium stalk rot can cause serious yield loss on maize, and to find the resistance genes from the existing germplasm is the basis to develop Pythium-resistance hybrid lines. In this study, we investigated the genetic resistance to Pythium stalk rot in inbred line Qi319 using F2 and F2:3 population, and found that the resistance to Pythium inflatum in Qi319 was conferred by two independently inherited dominant genes, RpiQI319-1 and RpiQI319-2. Linkage analysis uncovered that the RpiQI319-1 co-segregated with markers bnlg1203, and bnlg2057 on chromosome 1, and that the RpiQI319-2 locus co-segregated with markers umc2069 and bnlg1716 on chromosome 10. The RpiQI319-1 locus was further mapped into a ~500-kb interval flanked by markers SSRZ33 and SSRZ47. These results will facilitate marker-assisted selection of Pythium stalk rot-resistant cultivars in maize breeding. To our knowledge, this is the first report on the resistance to P. inflatum in the inbred line Qi319, and is also the first description of two independently inherited dominant genes conferring the resistance of Pythium stalk rot in maize.

  18. Structure-based functional characterization of repressor of toxin (Rot), a central regulator of Staphylococcus aureus virulence.

    Science.gov (United States)

    Killikelly, April; Benson, Meredith A; Ohneck, Elizabeth A; Sampson, Jared M; Jakoncic, Jean; Spurrier, Brett; Torres, Victor J; Kong, Xiang-Peng

    2015-01-01

    Staphylococcus aureus is responsible for a large number of diverse infections worldwide. In order to support its pathogenic lifestyle, S. aureus has to regulate the expression of virulence factors in a coordinated fashion. One of the central regulators of the S. aureus virulence regulatory networks is the transcription factor repressor of toxin (Rot). Rot plays a key role in regulating S. aureus virulence through activation or repression of promoters that control expression of a large number of critical virulence factors. However, the mechanism by which Rot mediates gene regulation has remained elusive. Here, we have determined the crystal structure of Rot and used this information to probe the contribution made by specific residues to Rot function. Rot was found to form a dimer, with each monomer harboring a winged helix-turn-helix (WHTH) DNA-binding motif. Despite an overall acidic pI, the asymmetric electrostatic charge profile suggests that Rot can orient the WHTH domain to bind DNA. Structure-based site-directed mutagenesis studies demonstrated that R(91), at the tip of the wing, plays an important role in DNA binding, likely through interaction with the minor groove. We also found that Y(66), predicted to bind within the major groove, contributes to Rot interaction with target promoters. Evaluation of Rot binding to different activated and repressed promoters revealed that certain mutations on Rot exhibit promoter-specific effects, suggesting for the first time that Rot differentially interacts with target promoters. This work provides insight into a precise mechanism by which Rot controls virulence factor regulation in S. aureus.

  19. In Vitro Antagonism of Bacillus thuringiensis NCIM2130 against Sclerotium rolfsii Sacc., A Stem Rot Pathogen of Groundnut

    OpenAIRE

    Ravindra. R. Rakh; Laxman S. Raut; Anand V. Manwar

    2016-01-01

    Stem rot is one of the most drastic diseases of groundnut that cause major crop loss. Stem rot pathogen of groundnut, Sclerotium rolfsii, was isolated from the infected groundnut stem. Present investigation was started to search for effective biocontrol agent against Sclerotium rolfsii. To find effective biocontrol agent, 120 Bacillus spp. isolated from various rhizospheric soils of healthy plants, screened in vitro against the stem rot pathogen by dual culture technique. Out of these Bacillu...

  20. Enhanced bioprocessing of lignocellulose: Wood-rot fungal saccharification and fermentation of corn fiber to ethanol

    Science.gov (United States)

    Shrestha, Prachand

    This research aims at developing a biorefinery platform to convert corn-ethanol coproduct, corn fiber, into fermentable sugars at a lower temperature with minimal use of chemicals. White-rot (Phanerochaete chrysosporium), brown-rot (Gloeophyllum trabeum) and soft-rot (Trichoderma reesei) fungi were used in this research to biologically break down cellulosic and hemicellulosic components of corn fiber into fermentable sugars. Laboratory-scale simultaneous saccharification and fermentation (SSF) process proceeded by in-situ cellulolytic enzyme induction enhanced overall enzymatic hydrolysis of hemi/cellulose from corn fiber into simple sugars (mono-, di-, tri-saccharides). The yeast fermentation of hydrolyzate yielded 7.1, 8.6 and 4.1 g ethanol per 100 g corn fiber when saccharified with the white-, brown-, and soft-rot fungi, respectively. The highest corn-to-ethanol yield (8.6 g ethanol/100 g corn fiber) was equivalent to 42 % of the theoretical ethanol yield from starch and cellulose in corn fiber. Cellulase, xylanase and amylase activities of these fungi were also investigated over a week long solid-substrate fermentation of corn fiber. G. trabeum had the highest activities for starch (160 mg glucose/mg protein.min) and on day three of solid-substrate fermentation. P. chrysosporium had the highest activity for xylan (119 mg xylose/mg protein.min) on day five and carboxymethyl cellulose (35 mg glucose/mg protein.min) on day three of solid-substrate fermentation. T. reesei showed the highest activity for Sigma cell 20 (54.8 mg glucose/mg protein.min) on day 5 of solid-substrate fermentation. The effect of different pretreatments on SSF of corn fiber by fungal processes was examined. Corn fiber was treated at 30 °C for 2 h with alkali [2% NaOH (w/w)], alkaline peroxide [2% NaOH (w/w) and 1% H2O 2 (w/w)], and by steaming at 100 °C for 2 h. Mild pretreatment resulted in improved ethanol yields for brown- and soft-rot SSF, while white-rot and Spezyme CP SSFs showed

  1. FTIR and XPS analysis of the changes in bamboo chemical structure decayed by white-rot and brown-rot fungi

    Energy Technology Data Exchange (ETDEWEB)

    Xu, Guoqi [College of Engineering and Technology, Northeast Forestry University, Harbin 150040 (China); Wang, Lihai, E-mail: xu12nefu@sina.cn [College of Engineering and Technology, Northeast Forestry University, Harbin 150040 (China); Liu, Junliang [Research Institute of Wood Industry, Chinese Academy of Forestry, Beijing 100091 (China); Wu, Jinzhuo [College of Engineering and Technology, Northeast Forestry University, Harbin 150040 (China)

    2013-09-01

    In order to investigate different types of decay mechanisms in bamboo (Phyllostachys edulis), the chemical structure and microstructure of bamboo samples decayed by P. chrysosporium (White-rot) and G. trabeum (Brown-rot) for 12 weeks were studied. The analysis methods include fourier transform infrared spectroscopy (FTIR), X-ray photoelectron spectroscopy (XPS), and scanning electron spectroscopy (SEM). By using the SEM method, it was found that attacks to parenchyma cells and places near the inner skin of bamboo were the most frequent and the vessels were the primary paths for the spread of mycelium in the bamboo. FTIR and XPS results showed that the crystallinity (I1425/I896) of bamboo decreased after being decayed by these two fungi and the crystalline cellulose in bamboo was degraded. The white-rot P. chrysosporium had stronger degradability on lignin compared to hemicellulose and cellulose in bamboo. And the brown-rot G. trabeum had preferential degradability on hemicellulose fraction over cellulose and lignin. Oxidation and hydrolysis surface reactions occurred during the process of decay, but the reaction rates for cellulose and lignin were different.

  2. Microsomal transformation of organophosphorus pesticides by white rot fungi.

    Science.gov (United States)

    Jauregui, Juan; Valderrama, Brenda; Albores, Arnulfo; Vazquez-Duhalt, Rafael

    2003-12-01

    The enzymatic mechanism for the transformation of organophosphorus pesticides (OPPs) by different white-rot fungi strains was studied. With the exception of Ganoderma applanatum 8168, all strains from a collection of 17 different fungi cultures were able to deplete parathion. Three strains showing the highest activities were selected for further studies: Bjerkandera adusta 8258, Pleurotus ostreatus 7989 and Phanerochaete chrysosporium 3641. These strains depleted 50 to 96% of terbufos, azinphos-methyl, phosmet and tribufos after four-days exposure to the pesticides. In order to identify the cellular localization of the transformation activity, the extracellular and microsomal fractions of Pleuronts ostreatus 7989 were evaluated in vitro. While the activities of ligninolytic enzymes (lignin peroxidase, manganese peroxidase and laccase) were detected in the extracellular fraction, no enzymatic modification of any of the five pesticides tested could be found, suggesting the intracellular origin of the transformation activity. In accordance with this observation the microsomal fraction was found able to transform three OPPs with the following rates: 10 micromol mg prot(-1) h(-1) for phosmet, 5.7 micromol mg prot(-1) h(-1) for terbufos, and 2.2 micromol mg prot(-1) h(-1) for azinphos-methyl. The products from these reactions and from the transformation of trichlorfon and malathion, were identified by mass-spectrometry. These results, supported by specific inhibition experiments and the stringent requirement for NADPH during the in vitro assays suggest the involvement of a cytochrome P450.

  3. Identification of naphthalene metabolism by white rot fungus Pleurotus eryngii.

    Science.gov (United States)

    Hadibarata, Tony; Teh, Zee Chuang; Rubiyatno; Zubir, Meor Mohd Fikri Ahmad; Khudhair, Ameer Badr; Yusoff, Abdull Rahim Mohd; Salim, Mohd Razman; Hidayat, Topik

    2013-10-01

    The use of biomaterials or microorganisms in PAHs degradation had presented an eye-catching performance. Pleurotus eryngii is a white rot fungus, which is easily isolated from the decayed woods in the tropical rain forest, used to determine the capability to utilize naphthalene, a two-ring polycyclic aromatic hydrocarbon as source of carbon and energy. In the meantime, biotransformation of naphthalene to intermediates and other by-products during degradation was investigated in this study. Pleurotus eryngii had been incubated in liquid medium formulated with naphthalene for 14 days. The presence of metabolites of naphthalene suggests that Pleurotus eryngii begin the ring cleavage by dioxygenation on C1 and C4 position to give 1,4-naphthaquinone. 1,4-Naphthaquinone was further degraded to benzoic acid, where the proposed terepthalic acid is absent in the cultured extract. Further degradation of benzoic acid by Pleurotus eryngii shows the existence of catechol as a result of the combination of decarboxylation and hydroxylation process. Unfortunately, phthalic acid was not detected in this study. Several enzymes, including manganese peroxidase, lignin peroxidase, laccase, 1,2-dioxygenase and 2,3-dioxygenase are enzymes responsible for naphthalene degradation. Reduction of naphthalene and the presence of metabolites in liquid medium showed the ability of Pleurotus eryngii to utilize naphthalene as carbon source instead of a limited glucose amount.

  4. Developmental and Metabolic Plasticity of White-Skinned Grape Berries in Response to Botrytis cinerea during Noble Rot.

    Science.gov (United States)

    Blanco-Ulate, Barbara; Amrine, Katherine C H; Collins, Thomas S; Rivero, Rosa M; Vicente, Ariel R; Morales-Cruz, Abraham; Doyle, Carolyn L; Ye, Zirou; Allen, Greg; Heymann, Hildegarde; Ebeler, Susan E; Cantu, Dario

    2015-12-01

    Noble rot results from exceptional infections of ripe grape (Vitis vinifera) berries by Botrytis cinerea. Unlike bunch rot, noble rot promotes favorable changes in grape berries and the accumulation of secondary metabolites that enhance wine grape composition. Noble rot-infected berries of cv Sémillon, a white-skinned variety, were collected over 3 years from a commercial vineyard at the same time that fruit were harvested for botrytized wine production. Using an integrated transcriptomics and metabolomics approach, we demonstrate that noble rot alters the metabolism of cv Sémillon berries by inducing biotic and abiotic stress responses as well as ripening processes. During noble rot, B. cinerea induced the expression of key regulators of ripening-associated pathways, some of which are distinctive to the normal ripening of red-skinned cultivars. Enhancement of phenylpropanoid metabolism, characterized by a restricted flux in white-skinned berries, was a common outcome of noble rot and red-skinned berry ripening. Transcript and metabolite analyses together with enzymatic assays determined that the biosynthesis of anthocyanins is a consistent hallmark of noble rot in cv Sémillon berries. The biosynthesis of terpenes and fatty acid aroma precursors also increased during noble rot. We finally characterized the impact of noble rot in botrytized wines. Altogether, the results of this work demonstrated that noble rot causes a major reprogramming of berry development and metabolism. This desirable interaction between a fruit and a fungus stimulates pathways otherwise inactive in white-skinned berries, leading to a greater accumulation of compounds involved in the unique flavor and aroma of botrytized wines.

  5. The rise and fall of the autochthonous self: from Italian Renaissance art and Shakespeare to Heidegger, Lacan, and intersubjectivism.

    Science.gov (United States)

    Chessick, Richard D

    2010-01-01

    This article addresses the unresolved question of the existence of a private core autochthonous self, as it has been described by Winnicott, Modell, and others. The postmodern version of the self has eliminated this concept entirely, relegating the self to a changing and unstable display, or regarding it as totally chaotic, or even an illusion. The question is raised whether by returning to the origins of this notion of a private self and then tracing its apparent dissolution it might be possible to discover some evidence that it still exists. The methodology used is that of obtaining knowledge directly through the arts and the claim is made that because empirical science has clamored to be the only source of knowledge, we have lost what could be obtained by direct intuitive seeing and experiencing the works of creative geniuses. To explore the rise of the autochthonous self this article provides an examination of the shift from Gothic art to Italian Renaissance art, a time which engendered the origin of "man" with his or her elusive private individual self that then became expressed in changing works of art. As this spread north, Shakespeare appeared and similarly invented and illustrated in his characters the private individual self, a concept not appreciated or recognized before the renaissance. But as science arose and Western civilization began to decline, a corresponding disillusionment with "man" took place. The self began to be viewed as solely a social construction with no core except perhaps a genetic endowment. This was accompanied by a reduction in the concept of the human as a valuable and precious living being and was replaced by regarding the human as an object of control and exploitation. After the Second World War a movement in contemporary United States psychoanalysis gradually replaced the ideas of Freud and his emphasis on the "I" in the psychoanalytic process, with forms of relational therapy, assuming that the self was ab initio

  6. Occurrence of Root Rot and Vascular Wilt Diseases in Roselle (Hibiscus sabdariffa L.) in Upper Egypt.

    Science.gov (United States)

    Hassan, Naglaa; Shimizu, Masafumi; Hyakumachi, Mitsuro

    2014-03-01

    Roselle (Hibiscus sabdariffa L.) family Malvaceae is an important crop used in food, cosmetics and pharmaceutics industries. Roselle is cultivated mainly in Upper Egypt (Qena and Aswan governorates) producing 94% of total production. Root rot disease of roselle is one of the most important diseases that attack both seedlings and adult plants causing serious losses in crop productivity and quality. The main objective of the present study is to identify and characterize pathogens associated with root rot and wilt symptoms of roselle in Qena, Upper Egypt and evaluate their pathogenicity under greenhouse and field condition. Fusarium oxysporum, Macrophomina phaseolina, Fusarium solani, Fusarium equiseti and Fusarium semitectum were isolated from the natural root rot diseases in roselle. All isolated fungi were morphologically characterized and varied in their pathogenic potentialities. They could attack roselle plants causing damping-off and root rot/wilt diseases in different pathogenicity tests. The highest pathogenicity was caused by F. oxysporum and M. phaseolina followed by F. solani. The least pathogenic fungi were F. equiseti followed by F. semitectum. It obviously noted that Baladi roselle cultivar was more susceptible to infection with all tested fungi than Sobhia 17 under greenhouse and field conditions. This is the first report of fungal pathogens causing root rot and vascular wilt in roselle in Upper Egypt.

  7. Involvement of phenolic compounds in the susceptibility of bananas to crown rot. A review

    Directory of Open Access Journals (Sweden)

    Lassois, L.

    2012-01-01

    Full Text Available Crown rot of bananas, caused by a fungal parasitic complex, is one of the main quality defects of exported bananas. Major variations in the susceptibility of bananas to crown rot have been observed in different production zones. The physiological state of the banana fruit at harvest is said to influence its response to pathogenic attack and thus to modulate its susceptibility to crown rot. The susceptibility of bananas to this disease, however, appears to be influenced by many pre-harvest factors, although the underlying defense mechanisms have not been clearly identified. A recent report based on molecular analyses suggests that phenolic compounds might be involved in the different variations in the susceptibility of bananas to crown rot. Results of other earlier studies point to an involvement of phenolic compounds in the defensive reactions of banana plants against various pathogens. The present paper reviews the current state of knowledge on the variations in the susceptibility of bananas to crown rot and takes stock of what is known about phenolic compounds in relation to their potential involvement in the defense mechanisms of the banana plant.

  8. Genetic analysis of partial resistance to basal stem rot (Sclerotinia sclerotiorum in sunflower

    Directory of Open Access Journals (Sweden)

    Amouzadeh Masoumeh

    2013-01-01

    Full Text Available Basal stem rot, caused by Sclerotinia sclerotiorum (Lib. de Bary, is one of the major diseases of sunflower (Helianthus annuus L. in the world. Quantitative trait loci (QTLs implicated in partial resistance to basal stem rot disease were identified using 99 recombinant inbred lines (RILs from the cross between sunflower parental lines PAC2 and RHA266. The study was undertaken in a completely randomized design with three replications under controlled conditions. The RILs and their parental lines were inoculated with a moderately aggressive isolate of S. sclerotiorum (SSKH41. Resistance to disease was evaluated by measuring the percentage of necrosis area three days after inoculation. QTLs were mapped using an updated high-density SSR and SNP linkage map. ANOVA showed significant differences among sunflower lines for resistance to basal stem rot (P≤0.05. The frequency distribution of lines for susceptibility to disease showed a continuous pattern. Composite interval mapping analysis revealed 5 QTLs for percentage of necrotic area, localized on linkage groups 1, 3, 8, 10 and 17. The sign of additive effect was positive in 5 QTLs, suggesting that the additive allele for partial resistance to basal stem rot came from the paternal line (RHA266. The phenotypic variance explained by QTLs (R2 ranged from 0.5 to 3.16%. Identified genes (HUCL02246_1, GST and POD, and SSR markers (ORS338, and SSL3 encompassing the QTLs for partial resistance to basal stem rot could be good candidates for marker assisted selection.

  9. Behavior of hybrid corn crop as second rot incidence in West Region Paraná

    Directory of Open Access Journals (Sweden)

    Jean Sérgio Rosset

    2013-09-01

    Full Text Available The objective of this study was to evaluate the incidence and influence of stalk rot and ear in cultivation of hybrid corn second crop in west region Paraná. The experiment was conducted in randomized block design with six transgenic corn hybrids (DKB 330PRO, P4285HX, P3646HX, 30F53HX, P3340HX and P3161HX with four replications at spacing of 0.90 m between rows and 0.20 m between plants. The characteristics evaluated were: number of healthy and symptomatic plants, number of ears healthy and symptomatic and total number of spikes. After harvest, we assessed the length of ears healthy and symptomatic, bulk grain ears healthy and symptomatic, thousand grain weight of ears healthy and symptomatic, and grain mass per spike weighted, thousand grain weight and weighted productivity. The hybrid P3646HX showed 100% of plants with stem base rot (Colletotrichum graminicola and soft rot cob (Erwinia chrysanthemi pv. Zeae and 100% of ears with symptoms of soft rot, followed by hybrid 30F53HX, DKB 330PRO with 34.9 and 29.1% of ears with symptoms of soft rot respectively. The hybrid DKB330PRO showed healthy spikes and patients with superior size, resulting in less interference in the grain yield. The hybrid P3340 productivity was higher, with 7952 kg ha-1 , followed by hybrid 30F53HX and DKB330PRO. A positive correlation between agronomic characteristics and grain yield.

  10. Investigation on Resistance against White-rot and Brown-rot Fungi of some Fire Retardant Chemicals in Laminate Flooring

    Directory of Open Access Journals (Sweden)

    Ferhat Özdemir

    2013-11-01

    Full Text Available The objective of this study is to determine the effects of some fire retardants on decay resistance of the high density fiberboard (HDF panels covered with overlay, decorative and balance papers. Borax (BX, boric acid (BA, ammonium polyphosphate (APP and alpha-x (AX as fire retardant (FR chemicals were added as powder into the fibers made from 50% pine and 50% beech woods at 3%, 6% and 9% levels based on oven-dry fiber weight. HDF panels (400x400x6.5mm were produced. After, surfaces of the panels were coated with overlay, decorative and balance papers. The panels were exposed to white (Ceriporiopsis subvermisphora and brown (Coniophora puteana decay fungi. The decay resistance of panels was investigated. The results showed that the addition of FR chemicals increased resistance against white and brown rot fungi of the panels. Thus, it was ascertained that concentration and type of FR chemicals are effective on decay resistance of laminate flooring

  11. First description of autochthonous canine visceral leishmaniasis in the metropolitan region of Vitória, State of Espírito Santo, Brazil

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    Marco André Loureiro Tonini

    2012-12-01

    Full Text Available INTRODUCTION: We investigated autochthonous canine visceral leishmaniasis (CVL in the metropolitan region of Vitória (MRV, an area in which a human case was previously reported. METHODS: Serological, parasitological, and molecular tests were performed in 201 dogs. RESULTS: Twenty-six (13% and 12 (6% dogs were identified as positive using in-house enzyme-linked immunosorbent assay (ELISA and rK39 tests, respectively. Two dogs had a positive culture for Leishmania chagasi, and 4 were polymerase chain reaction (PCR-positive for Leishmania spp. One positive dog belonged to the aforementioned patient. CONCLUSIONS: Although the responsible vector was not found, our results provide evidence of autochthonous CVL in the MRV, a non-endemic area for VL.

  12. Chitosan and oligochitosan enhance ginger (Zingiber officinale Roscoe) resistance to rhizome rot caused by Fusarium oxysporum in storage

    Science.gov (United States)

    The ability of chitosan and oligochitosan to enhance the resistance of ginger (Zingiber officinale) to rhizome rot, caused by Fusarium oxysporum, in storage was investigated. Both chitosan and oligochitosan at 1 and 5 g/L significantly inhibited rhizome rot, relative to the untreated control, with...

  13. Mucor rot - An emerging postharvest disease of mandarin fruit caused by Mucor piriformis and other Mucor spp. in California

    Science.gov (United States)

    In recent years, an emerging, undescribed postharvest fruit rot disease was observed on mandarin fruit after extended storage in California. We collected decayed mandarin fruit from three citrus packinghouses in the Central Valley of California in 2015 and identified this disease as Mucor rot caused...

  14. New insights into the ecological interaction between grape berry microorganisms and Drosophila flies during the development of sour rot.

    Science.gov (United States)

    Barata, André; Santos, Sara Correia; Malfeito-Ferreira, Manuel; Loureiro, Virgílio

    2012-08-01

    In this work, we studied the ecological interactions between grape berry microorganisms and Drosophila sp. flies involved in sour rot disease during grape ripening. After veráison the total microbial counts of grape berries affected by sour rot increased from about 2 log CFU/g of berries to more than 7 log CFU/g. Berry damage provoked a clear shift in yeast diversity from basidiomycetes to ascomycetous fermentative species. The latter were mostly Pichia terricola, Hanseniaspora uvarum, Candida zemplinina, and Zygoascus hellenicus. However, these species were not able to produce the metabolites characteristic of sour rot (gluconic and acetic acids) in inoculated berries. On the contrary, the acetic acid bacteria Gluconacetobacter saccharivorans produced high levels of these acids, mainly when berries were incubated in the presence of the insect Drosophila sp. Sour rot was not observed when grape bunches were physically separated from insects, even when berries were artificially injured. The wounds made in berry skin healed in the absence of insects, thus preventing the development of sour rot. Therefore, in the vineyard, the induction of sour rot depends on the contamination of wounded berries by a microbial consortium--yeasts and acetic acid bacteria--transported by drosophilid insects which disseminate sour rot among damaged berries. In the absence of these insects, plant defense mechanisms are effective and lead to skin healing, preventing disease spread. Thus, we showed that Drosophila sp. act as a vector for microorganisms associated with grape sour rot disease.

  15. Multiplex detection and identification of bacterial pathogens causing potato blackleg and soft rot in Europe, using padlock probes

    NARCIS (Netherlands)

    Slawiak, M.; Doorn, van R.; Szemes, M.; Speksnijder, A.G.C.L.; Waleron, M.; Wolf, van der J.M.; Lojkowska, E.; Schoen, C.D.

    2013-01-01

    The objective of this study was to develop a multiplex detection and identification protocol for bacterial soft rot coliforms, namely Pectobacterium wasabiae (Pw), Pectobacterium atrosepticum (Pba) and Dickeya spp., responsible for potato blackleg and tuber soft rot. The procedures were derived from

  16. rDNA-based characterization of a new binucleate Rhizoctonia spp. causing root rot on kale in Brazil

    NARCIS (Netherlands)

    Kuramae, E.E.; Buzeto, A.L.; Nakatani, A.K.; Souza, N.L.

    2007-01-01

    In this paper we present the first report of the occurrence of a binucleate Rhizoctonia spp. causing hypocotyl and root rot in kale in Brazil. Rhizoctonia spp. were isolated from kale (Brassica oleracea var. acephala) with symptoms of hypocotyl and root rot. The isolates, characterized as binucleate

  17. Characterisation of extra virgin olive oils from Galician autochthonous varieties and their co-crushings with Arbequina and Picual cv.

    Science.gov (United States)

    Reboredo-Rodríguez, P; González-Barreiro, C; Cancho-Grande, B; Fregapane, G; Salvador, M D; Simal-Gándara, J

    2015-06-01

    The current trend of the olive oil market is the production of high quality extra from traditional minor olive varieties with peculiar and differentiated characteristics (especially with respect to the aromatic and phenolic composition). In this way, the interest of Galician oil producers (NW Spain) in recovering old autochthonous Local olive fruits has increased substantially in recent years. In order to investigate the potential of the Local olives by either producing high quality monovarietal oils or mixing with the most widespread olives in Galicia (Arbequina and Picual cv.), quality indices, and fatty acid composition as well as volatile and phenolic profiles were determined and compared. All EVOOs studied in this work can be considered as "extra virgin olive oil" due to quality indices fell within the ranges established in legislation. Picual and Local olive oils as well as those resulting from their co-crushing reach values which are required by EU legislation to add the specific health claim on the oil label. Co-crushing Picual:Local (80:20) provided a significant enhancement of grass and apple nuances and a decrease of banana notes with respect to Picual oils. The co-crushing process improved sensory and health properties of Picual extra virgin olive oils. The effect of co-crushing on phenolics, ester volatiles and banana nuances cannot be easily modulated, contrary to quality indices and fatty acid composition, both changing linearly in strict correlation with the fruit mass ratio.

  18. Schistosomal myeloradiculopathy in a low-prevalence area: 27 cases (14 autochthonous in Campinas, São Paulo, Brazil

    Directory of Open Access Journals (Sweden)

    André Ricardo Ribas Freitas

    2010-07-01

    Full Text Available Schistosomal myeloradiculopathy (SMR is a form of schistosomiasis that is not linked with a high worm burden but rather is found in patients who have been sporadically exposed to Schistosoma mansoni. This paper aims to determine the occurrence of SMR in a low-endemic area with urban transmission in Campinas, São Paulo, Brazil. A retrospective study was performed, identifying confirmed cases in the two largest public hospitals on the region. Patients were diagnosed with SMR using standardised criteria, common clinical parameters, evidence of schistosomal infection and exclusion of other causes of myelopathy. A total of 27 patients were identified; 19 (85.2% were men and four (14.8% were women, ranging from 13-57 years of age (mean = 31.2; standard deviation = 12.8. Patients were classified as autochthonous (n = 14; 51.9% or allochthonous (n = 11; 40.7% and epidemiological data could not be obtained for two patients (7.4%. The clinical parameters of these patients were not different from previous studies. The sensitivity of serum immune reactions, cerebrospinal fluid immune reactions and parasitological stool examinations in identifying infected individuals was 87.5%, 93.8% and 40%, respectively. The epidemiological importance of these findings and their relationship with the control policies of schistosomiasis are discussed.

  19. Schistosomal myeloradiculopathy in a low-prevalence area: 27 cases (14 autochthonous) in Campinas, São Paulo, Brazil.

    Science.gov (United States)

    Freitas, André Ricardo Ribas; Oliveira, Augusto César Penalva; Silva, Luiz Jacintho

    2010-07-01

    Schistosomal myeloradiculopathy (SMR) is a form of schistosomiasis that is not linked with a high worm burden but rather is found in patients who have been sporadically exposed to Schistosoma mansoni. This paper aims to determine the occurrence of SMR in a low-endemic area with urban transmission in Campinas, São Paulo, Brazil. A retrospective study was performed, identifying confirmed cases in the two largest public hospitals on the region. Patients were diagnosed with SMR using standardised criteria, common clinical parameters, evidence of schistosomal infection and exclusion of other causes of myelopathy. A total of 27 patients were identified; 19 (85.2%) were men and four (14.8%) were women, ranging from 13-57 years of age (mean = 31.2; standard deviation = 12.8). Patients were classified as autochthonous (n = 14; 51.9%) or allochthonous (n = 11; 40.7%) and epidemiological data could not be obtained for two patients (7.4%). The clinical parameters of these patients were not different from previous studies. The sensitivity of serum immune reactions, cerebrospinal fluid immune reactions and parasitological stool examinations in identifying infected individuals was 87.5%, 93.8% and 40%, respectively. The epidemiological importance of these findings and their relationship with the control policies of schistosomiasis are discussed.

  20. The Genetic History of Peruvian Quechua‐Lamistas and Chankas: Uniparental DNA Patterns among Autochthonous Amazonian and Andean Populations

    Science.gov (United States)

    Sandoval, José R.; Lacerda, Daniela R.; Acosta, Oscar; Jota, Marilza S.; Robles‐Ruiz, Paulo; Salazar‐Granara, Alberto; Vieira, Pedro Paulo R.; Paz‐y‐Miño, César; Fujita, Ricardo

    2016-01-01

    Summary This study focuses on the genetic history of the Quechua‐Lamistas, inhabitants of the Lamas Province in the San Martin Department, Peru, who speak their own distinct variety of the Quechua family of languages. It has been suggested that different pre‐Columbian ethnic groups from the Peruvian Amazonia, like the Motilones or “shaven heads”, assimilated the Quechua language and then formed the current native population of Lamas. However, many Quechua‐Lamistas claim to be direct descendants of the Chankas, a famous pre‐Columbian indigenous group that escaped from Inca rule in the Andes. To investigate the Quechua‐Lamistas and Chankas’ ancestries, we compared uniparental genetic profiles (17 STRs of Q‐M3 Y‐chromosome and mtDNA complete control region haplotypes) among autochthonous Amazonian and Andean populations from Peru, Bolivia and Ecuador. The phylogeographic and population genetic analyses indicate a fairly heterogeneous ancestry for the Quechua‐Lamistas, while they are closely related to their neighbours who speak Amazonian languages, presenting no direct relationships with populations from the region where the ancient Chankas lived. On the other hand, the genetic profiles of self‐identified Chanka descendants living in Andahuaylas (located in the Apurimac Department, Peru, in the Central Andes) were closely related to those living in Huancavelica and the assumed Chanka Confederation area before the Inca expansion. PMID:26879156

  1. Antioxidant Properties and Flavonoid Profile in Leaves of Calabrian Lavandula multifida L., an Autochthon Plant of Mediterranean Southern Regions.

    Science.gov (United States)

    Panuccio, Maria Rosaria; Fazio, Angela; Papalia, Teresa; Barreca, Davide

    2016-04-01

    Lavandula multifida is a rare short-lived plant characteristic of Mediterranean basin able to survive in hot and arid climatic conditions on poorly evolved limestone soils. In this work, we characterize the enzymatic antioxidant system and phenolic composition, as well as the antioxidant properties of L. multifida fresh leaves. Enzymatic patterns show high level of peroxidases, ascorbate peroxidase, and dehydroascorbate reductase activities, when compared with L. angustifolia. The same trend is evident in total carotenoids, ascorbic acid, and reduced glutathione, and in the total antioxidant capacity assay. Moreover, RP-DAD-HPLC analyses of EtOH extract, obtained from fresh leaves, reveal main components, carvacrol, vitexin, and 7- or 8-glucoside derivatives of hypolaetin, scutellarein, luteolin, isoscutellarein, apigenin, and chrysoeriol. The analysis of this autochthon plant depicted a series of strategies adopted by L. multifida to survive in its stressful natural habitat and richness in health-promoting compounds that can be a resource for the preservation of this variety in dangerous of extinction.

  2. Potential antimicrobial and antiproliferative activities of autochthonous starter cultures and protease EPg222 in dry-fermented sausages.

    Science.gov (United States)

    Fernández, Margarita; Ruiz-Moyano, Santiago; Benito, María José; Martín, Alberto; Hernández, Alejandro; Córdoba, María de Guía

    2016-05-18

    This work studied the presence of nitrogen compounds with bioactive properties in Iberian pork sausages that were manufactured using different autochthonous starter cultures (Pediococcus acidilactici MS200 and Staphylococcus vitulus RS34) and protease EPg222. Nitrogen compounds were extracted and evaluated for their antimicrobial effect against spoilage and pathogenic bacteria, such as Bacillus cereus, Escherichia coli, Salmonella choleraesuis, Staphylococcus aureus and Listeria monocytogenes, and antiproliferative activity on the HT-29 colon adenocarcinoma cell line. Dry-fermented sausages elaborated with starter cultures P200S34 and protease EPg222 generate extracts that cause inhibition of the growth of pathogens reaching 25% inhibition of Bacillus cereus, making this a promising tool for biocontrol in the meat industry. On the other hand, the inoculation of well-adapted starter cultures with high proteolytic activity also increased the antiproliferative activity of these extracts, around 45% inhibition at 72 h, mainly due to an increase in free amino acids, such as Lys and Pro, but also small peptides.

  3. Effect of Chitosan on Rhizome Rot Disease of Turmeric Caused by Pythium aphanidermatum.

    Science.gov (United States)

    Anusuya, Sathiyanarayanan; Sathiyabama, Muthukrishnan

    2014-01-01

    Chitosan was evaluated for its potential to induce antifungal hydrolases in susceptible turmeric plant (Curcuma longa L.). Under field conditions, the application of chitosan (crab shell) to turmeric plants by foliar spray method induces defense enzymes such as chitinases and chitosanases. Such an increase in enzyme activity was enhanced by spraying chitosan (0.1% w/v) on leaves of turmeric plants at regular intervals. Gel electrophoresis revealed new chitinase and chitosanase isoforms in leaves of turmeric plants treated with chitosan. Treated turmeric plants showed increased resistance towards rhizome rot disease caused by Pythium aphanidermatum, whereas control plants expressed severe rhizome rot disease. Increased activity of defense enzymes in leaves of chitosan treated turmeric plants may play a role in restricting the development of disease symptoms. The eliciting properties of chitosan make chitosan a potential antifungal agent for the control of rhizome rot disease of turmeric.

  4. Control of Fusarium verticillioides, cause of ear rot of maize, by Pseudomonas fluorescens

    DEFF Research Database (Denmark)

    Nayaka, Siddaiah Chandra; Shankar, Akarere C. Udaya; Reddy, Munagala S.;

    2009-01-01

    Abstract BACKGROUND: Maize is one of the staple food crops grown in India. Fusarium verticillioides (Sacc.) Nirenberg is the most important fungal pathogen of maize, associated with diseases such as ear rot and kernel rot. Apart from the disease, it is capable of producing fumonisins, which have...... elicited considerable attention over the past decade owing to their association with animal disease syndromes. Hence, the present study was conducted to evaluate ecofriendly approaches by using a maize rhizosphere isolate of Pseudomonas fluorescens (Trev.) Mig. and its formulation to control ear rot...... disease and fumonisin accumulation, and also to study the capacity to promote growth and yield of maize. In vitro assays were conducted to test the efficacy of P. fluorescens as a seed treatment on seed germination, seedling vigour and also the incidence of F. verticillioides in different maize cultivars...

  5. Serpula lacrymans, The Dry Rot Fungus and Tolerance Towards Copper-Based Wood Preservatives

    DEFF Research Database (Denmark)

    Hastrup, Anne Christine Steenkjær; Jensen, Bo; Clausen, Carol;

    2005-01-01

    wood preservatives were the most commonly used preservatives for pressure treatment of wood for building constructions. Because of a suspicion about tolerance toward copper components, a soil block test was undertaken to clarify the effect of two copper based preservatives, copper citrate and ACQ......Serpula lacrymans (Wulfen : Fries) Schröter, the dry rot fungus, is considered the most (Wulfen : Fries) Schröterthe dry rot fungus, is considered the most economically important wood decay fungus in temperate regions of the world i.e. northern Europe, Japan and Australia. Previously copper based......-D, on the dry rot fungus, Serpula lacrymans compared to an alternative non-copper containing wood preservative. The extensive use of copper-based wood preservatives has hastened the need for understanding why some fungi are able to attack copper-treated wood. The copper tolerance of S. lacrymans and other brown...

  6. Survey of root rot diseases of sugar bett in Central Greece

    Directory of Open Access Journals (Sweden)

    Karadimos Dimitros A.

    2006-01-01

    Full Text Available An extensive survey was conducted during the summer and autumn of 2004 in sugar beet fields in the area of Larissa, Thessaly region, with plants showing symptoms of root rot diseases. The aim of the monitoring was to identify the causal agents of root rot diseases. In total, 76 sugar beet fields were surveyed and 5-10 diseased roots were examined from each field. Isolations, carried out on PDA, showed that two main fungal pathogens causing root rot were Rhizoctonia solani and Phytophthora cryptogea. The former was isolated in 46% of the fields and the latter in 38% of the fields. In addition, Rhizopus stolonifer, Fusarium spp., Scerotium rolfsii and Rhizoctonia violacea were isolated in 14%, 7%, 4% and 1% of the fields respectively. In most of the surveyed fields only one pathogen species was isolated and only in a few of them more than one fungal species was identified.

  7. Autochthonous sporadic acute hepatitis E caused by two distinct subgenotype 3b hepatitis E virus strains with only 90% nucleotide identity.

    Science.gov (United States)

    Yamaguchi, Yasuko; Takagi, Hitoshi; Suzuki, Yuhei; Maruhashi, Kyoko; Kosone, Takashi; Kakizaki, Satoru; Sato, Ken; Yamada, Masanobu; Nagashima, Shigeo; Takahashi, Masaharu; Okamoto, Hiroaki

    2017-04-01

    Hepatitis E, which is caused by hepatitis E virus (HEV), is a public health concern in Japan, where the zoonotic food-borne transmission of HEV from domestic pigs and wild boars plays an important role. A 44-year-old Japanese man with autochthonous sporadic acute hepatitis E was admitted with general fatigue and moderate liver dysfunction. In the present study, two distinct HEV strains were recovered from the patient, who had consumed the raw or undercooked pig liver and intestine two or three times per week for 3 months before the disease onset. The recovered HEV strains were segregated into two clusters within subgenotype 3b, the open reading frame (ORF)1 and ORF2 sequences of which each showed ~10% difference, indicating HEV mixed infection. Because most notified patients with clinical HEV infection in Japan are diagnosed based on the detection of IgA-class HEV antibodies and because serum samples from only a limited number of HEV-infected patients are subjected to HEV RNA detection and nucleotide sequencing, it is very likely that patients with HEV mixed infection remain largely overlooked. The identification of sources of autochthonous HEV infection remains an important goal. Continued efforts to trace the sources of acute or chronic autochthonous HEV infection are warranted.

  8. ISOLATION AND IDENTIFICATION OF BACTERIAL CAUSED SOFT ROT DISEASE ON CARROT (Daucus carota L. LOCAL VARIETY IN BALI

    Directory of Open Access Journals (Sweden)

    Ni Wayan Desi Bintari

    2015-03-01

    Full Text Available Soft rot bacteria infection in carrot tuber (D. carota L. causes severe economic losses. Soft rot disease can be caused by various bacteria belonging to Enterobacteriaceae. This study aimed to isolate and identify bacteria as causal agent of soft rot disease in local carrot variety in Bali. Samples were collected at Badung Tradisional Market, Denpasar, Bali. Isolation was carried out by serial dilution method (Platting Method. Eight bacteria (BL1, BL2, BL3, BL4, BL5, BL6, BL7 and BL8 were isolated from soft rot tuber. BL6 isolate showed positive result in Postulat Koch test that caused soft rot on carrot tuber. The result of identification by Microgen™ GnA+B-ID System and identification book Bergeys’s Manual of Determinative Bacteriology Ninth Edition (Holt et al., 1994, BL6 was identified as Citrobacter.

  9. The Chaperone ClpX Stimulates Expression of Staphylococcus aureus Protein A by Rot Dependent and Independent Pathways

    DEFF Research Database (Denmark)

    Jelsbak, Lotte; Ingmer, Hanne; Valihrach, Lukás;

    2010-01-01

    The Clp ATPases (Hsp100) constitute a family of closely related proteins that have protein reactivating and remodelling activities typical of molecular chaperones. In Staphylococcus aureus the ClpX chaperone is essential for virulence and for transcription of spa encoding Protein A. The present...... study was undertaken to elucidate the mechanism by which ClpX stimulates expression of Protein A. For this purpose, we prepared antibodies directed against Rot, an activator of spa transcription, and demonstrated that cells devoid of ClpX contain three-fold less Rot than wild-type cells. By varying Rot...... expression from an inducible promoter we showed that expression of Protein A requires a threshold level of Rot. In the absence of ClpX the Rot content is reduced below this threshold level, hence, explaining the substantially reduced Protein A expression in the clpX mutant. Experiments addressed...

  10. Phytophthora root and stem rot – new disease of Ilex aquifolium "Myrtifolia” in Poland

    Directory of Open Access Journals (Sweden)

    Leszek B. Orlikowski

    2014-08-01

    Full Text Available Phytophthora cinnamomi was often isolated from rotted roots and stems of English holly "Myrtifolia" together with Alternaria alternata, Cylindrocarpon destructanss, Fusarium avenaceum and other fungal species. Inoculation of leaf blades and stem parts of 4 species and 12 holly cultivars with P. cinnamomi showed the spread of rot symptoms on the most of them. On Ilex crenata tissues necrosis did not develop or spread slowly. Isolation of P. cinnamomi only from one holly cultivar in surveyed nursery indicate on transmission of the pathogen with imported young plants.

  11. Model of Fabry-Pérot-type electromagnetic modes of a cylindrical nanowire

    DEFF Research Database (Denmark)

    Bordo, Vladimir

    2010-01-01

    The rigorous theory of normal electromagnetic modes of a cylindrical nanowire of finite length is developed. The exact integral equation which determines the solution of Maxwell's equations obeying the boundary conditions at the whole nanowire surface is derived. The nanowire normal (Fabry......-Pérot) modes are defined as non-trivial solutions of the source-free equation. The approach is considered in more detail for elongated nanowires whose length is much larger than their diameter. The resonance condition obtained for a single-mode nanowire resembles the formula for the Fabry-Pérot resonator...

  12. The Three-Arm Michelson-Fabry-Pérot Detector for Gravitational Waves

    Institute of Scientific and Technical Information of China (English)

    Chao-Guang Huang; Yong-Gui Li; Ning Zhu

    2016-01-01

    A three-arm Michelson-Fabry-Pérot detector for gravitational waves is designed.It consists of three Michelson Fabry-Pérot interferometers,one for each pair of arms.The new detector can be used to confirm whether the gravitational waves are in general relativity polarization states and to set the strong constraints on non-GR gravitational wave polarization states.By the new detectors,the angular resolution of sources can be improved significantly.With the new detector,it is easier to search for and confirm a gravitational wave signal in the observation data.

  13. New record of Phytophthora root and stem rot of Lavandula angustifolia

    Directory of Open Access Journals (Sweden)

    Leszek B. Orlikowski

    2013-12-01

    Full Text Available Phytophthora cinnamomi was isolated from rotted root and stem parts of lavender as well as from soil taken from containers with diseased plants. Additionally Botrytis cinerea, Fusarium spp. and Sclerotinia sclerotiorum were often isolated from diseased tissues. P. cinnamomi colonised leaves and stem parts of 4 lavender species in laboratory trials and caused stem rot of plants in greenhouse experiments. Cardinal temperature for in vitro growth were about 7,5 and 32°C with optimum 25-27,5°C. The species colonised stem tissues at temperature ranged from 10° to 32°C.

  14. Biocontrol Characteristics of Bacillus Species in Suppressing Stem Rot of Grafted Cactus Caused by Bipolaris cactivora

    OpenAIRE

    Sooil Bae; Sang Gyu Kim; Young Ho Kim

    2013-01-01

    One of the most important limiting factors for the production of the grafted cactus in Korea is the qualitative and quantitative yield loss derived from stem rots especially caused by Bipolaris cactivora. This study is aimed to develop microbial control agents useful for the control of the bipolaris stem rot. Two bacteria (GA1-23 and GA4-4) selected out of 943 microbial isolates because of their strong antibiotic activity against B. cactivora were identified as Bacillus subtilis and B. amylol...

  15. Functional Genomics of Lignocellulose Degradation in the Basidiomycete White Rot Schizophyllum commune

    Energy Technology Data Exchange (ETDEWEB)

    Ohm, Robin A. [Joint Genome Inst., Walnut Creek, CA (United States); Tegelaar, Martin [Utrecht Univ. (Netherlands); Henrissat, Bernard [Univ. of Marseille (France); Brewer, Heather M. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Purvine, Samuel O. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Baker, Scott [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Wosten, Han A. B. [Utrecht Univ. (Netherlands); Grigoriev, Igor V. [Joint Genome Inst., Walnut Creek, CA (United States); Lugones, Luis G. [Utrecht Univ. (Netherlands)

    2013-03-01

    White and brown rot fungi are among the most important wood decayers in nature. Although more than 50 genomes of Basidiomycete white and brown rots have been sequenced by the Joint Genome Institute, there is still a lot to learn about how these fungi degrade the tough polymers present in wood. In particular, very little is known about how these fungi regulate the expression of genes involved in lignocellulose degradation. Here, we used transcriptomics, proteomics, and promoter analysis in an effort to gain insight into the process of lignocellulose degradation.

  16. MicroRNA-16 suppresses metastasis in an orthotopic, but not autochthonous, mouse model of soft tissue sarcoma

    Directory of Open Access Journals (Sweden)

    Mohit Sachdeva

    2015-08-01

    Full Text Available MicroRNAs (miRNAs can regulate tumor cell invasion and metastasis in a tumor-specific manner. We recently demonstrated that global downregulation of miRNAs after deleting dicer can promote development of distant metastases in a mouse model of primary soft tissue sarcoma (STS. In this study, we identified miRNAs that are differentially downregulated in metastatic STS in both human and mouse, and investigated the role of these miRNAs in metastasis. miRNA- TaqMan PCR arrays showed a global downregulation of miRNAs in metastatic human sarcomas. Similar analysis in mouse metastatic sarcomas revealed overlap for several downregulated miRNAs including miR-16, miR-103, miR-146a, miR-223, miR-342 and miR-511. Restoration of these downregulated miRNAs in mouse primary sarcoma cell lines showed that miR-16, but not other downregulated miRNAs, was able to significantly suppress both migration and invasion in vitro, without altering cell proliferation. In addition, orthotopic transplantation of a sarcoma cell line stably expressing miR-16 into the muscle of immunocompromised mice revealed that restoration of miR-16 can significantly decrease lung metastasis in vivo. However, no change in the rate of lung metastasis was observed when miR-16 was deleted in mouse primary sarcomas at sarcoma initiation. Taken together, these results indicate that miR-16 can have metastasis-suppressing properties both in vitro and in vivo. However, the loss-of-function experiments in autochthonous tumors indicate that loss of miR-16 is not sufficient to promote metastasis in vivo.

  17. The Indian origin of paternal haplogroup R1a1* substantiates the autochthonous origin of Brahmins and the caste system.

    Science.gov (United States)

    Sharma, Swarkar; Rai, Ekta; Sharma, Prithviraj; Jena, Mamata; Singh, Shweta; Darvishi, Katayoon; Bhat, Audesh K; Bhanwer, A J S; Tiwari, Pramod Kumar; Bamezai, Rameshwar N K

    2009-01-01

    Many major rival models of the origin of the Hindu caste system co-exist despite extensive studies, each with associated genetic evidences. One of the major factors that has still kept the origin of the Indian caste system obscure is the unresolved question of the origin of Y-haplogroup R1a1*, at times associated with a male-mediated major genetic influx from Central Asia or Eurasia, which has contributed to the higher castes in India. Y-haplogroup R1a1* has a widespread distribution and high frequency across Eurasia, Central Asia and the Indian subcontinent, with scanty reports of its ancestral (R*, R1* and R1a*) and derived lineages (R1a1a, R1a1b and R1a1c). To resolve these issues, we screened 621 Y-chromosomes (of Brahmins occupying the upper-most caste position and schedule castes/tribals occupying the lower-most positions) with 55 Y-chromosomal binary markers and seven Y-microsatellite markers and compiled an extensive dataset of 2809 Y-chromosomes (681 Brahmins, and 2128 tribals and schedule castes) for conclusions. A peculiar observation of the highest frequency (up to 72.22%) of Y-haplogroup R1a1* in Brahmins hinted at its presence as a founder lineage for this caste group. Further, observation of R1a1* in different tribal population groups, existence of Y-haplogroup R1a* in ancestors and extended phylogenetic analyses of the pooled dataset of 530 Indians, 224 Pakistanis and 276 Central Asians and Eurasians bearing the R1a1* haplogroup supported the autochthonous origin of R1a1 lineage in India and a tribal link to Indian Brahmins. However, it is important to discover novel Y-chromosomal binary marker(s) for a higher resolution of R1a1* and confirm the present conclusions.

  18. First Proliferative Kidney Disease outbreak in Austria, linking to the aetiology of Black Trout Syndrome threatening autochthonous trout populations.

    Science.gov (United States)

    Gorgoglione, Bartolomeo; Kotob, Mohamed H; Unfer, Günter; El-Matbouli, Mansour

    2016-05-01

    Proliferative Kidney Disease (PKD) was diagnosed in juvenile autochthonous brown trout Salmo trutta for the first time in Austria during summer 2014. Cytology showed Tetracapsuloides bryosalmonae sporoblasts, and histology revealed sporogonic (coelozoic) and extrasporogonic (histozoic) stages. Analysis of malacosporean ribosomal small subunit revealed that this strain is closely related to European isolates, although its source is unknown. Infection and high pathogenicity were reproduced upon a pre-restocking test with specific pathogen free (SPF) juvenile trout, resulting in 100% mortality between 28 and 46 d post exposure (dpe), with high ectoparasitosis. Fish showed grade 2 of the Kidney Swelling Index and grade 3 of the PKD histological assessment. T. bryosalmonae enzootic waters were demonstrated in further locations along the River Kamp, with infected bryozoans retrieved up to 6 km upstream of the farm with the PKD outbreak. Fredericella sultana colonies collected from these locations were cultivated in laboratory conditions. Released malacospores successfully induced PKD, and contextually Black Trout Syndrome (BTS), in SPF brown trout. In the absence of co-infections mortality occurred between 59 and 98 dpe, with kidneys enlarged up to 6.74% of total body weight (normal 1.23%). This study confirms the first isolation of a pathogenic myxozoan from an Austrian river tributary of the Danube, where its 2-host life cycle is fully occurring. Its immunosuppressant action could link PKD as a key factor in the multifactorial aetiology of BTS. This T. bryosalmonae isolation provides an impetus to undertake further multi-disciplinary research, aiming to assess the impact of PKD and BTS spreading to central European regions.

  19. AMPELOGRAPHIC CHARACTERIZATION OF THE AUTOCHTHONOUS GRAPE CULTIVAR “KALLMET” IN MAL��SIA E MADHE, ALBANIA

    Directory of Open Access Journals (Sweden)

    Bardhosh Ferraj

    2012-06-01

    Full Text Available “Kallmet” is one of the most sprout autochthonous wine grape cultivar in the North-western and Central part of Albania. Study was conducted in three consecutive years, 2009-2011, in Malësia e Madhe, 250 m above the sea level, in the North-western part of Albania, in a 10 years old vineyard. For evaluation of the main characteristics the IPGRI Descriptors of Grapevine was used. Form of the new shoot tip of “Kallmet” is half-open, with no anthocianic coloration, and densely prostrate hairs. The upper surface colour of new leaf is green with bronze spots. Flower type is functional female, and the first florescence appears at the 4-5th nodes. Mature leaf size is medium, leaf shape is pentangular, shape of the lateral teeth is convex in both sides, shape of the base sinus is half-open, shape of the upper lateral sinus is closed, and the depth of the upper lateral sinus is 63 mm. Bunch weight is small and bunch density is medium. “Kallmet” has medium-sized spherical deep red to violet berry with soft colourless pulp. Berries are not uniform and there occur a high rate of millerandage because of the lack of pollination during flowering time. Grape yield is 155 kv ha-1, grape must content is 67 ml/100 g fresh grape, sugar content is 21%, total acidity 5.7 g/l. The time of bud break is medium, while the number of inflorescences for fruit-bearing offshoot is 1.7. The annual vegetative growth is 180 cm. “Kallmet” leaves are susceptible to Plasmopara viticola, while the berries appear a relatively high resistance to Plasmopara viticola, and high resistance to Uncinula necator and Botrytis cynerea.

  20. Phytophthora Root and Crown Rot on Apples in Bulgaria

    Directory of Open Access Journals (Sweden)

    Mariana Nakova

    2010-01-01

    Full Text Available Phytophthora is a genus of Oomycota responsible for some of the most serious diseases with great economic impact (Judelson and Blanco, 2005. While 54 species were found in the 20th century (Erwin and Ribeiro, 1996 another 51-54 new species have been identified(Brasier, 2008 since the year 2000. They are spread worldwide and have broad range of host plants – fruit trees, citrus, forest and park species. Phytophthora can cause serious damages in orchards and nurseries of apples, cherries, etc. In Bulgaria they have been found first on young apples and cherries (1998-1999 in Plovdiv region (Nakova, 2003. Surveys have been done for discovering disease symptoms in Plovdiv and Kjustendil regions. Isolates have been obtained from infected plant material (roots and stem bases applying baiting bioassay (green apples, variety Granny Smith and/or PARP 10 selective media. Phytophthora strains were identified based on standard morphology methods – types of colonies on PDA, CMA, V 8, type and size of sporangia, oogonia and antheridia, andoospores. Cardial temperatures for their growth were tested on CMA and PDA.For molecular studies, DNA was extracted from mycelium using the DNA extraction kit.DNA was amplified using universal primers ITS 6 and ITS 4. Amplification products concentrations were estimated by comparison with the standard DNA. Sequencing was done at the Scottish Crop Research Institute (SCRI, Dundee, Scotland. Phytophthora root and crown rot symptoms first appear in early spring. Infected trees show bud break delay, have small chlorotic leaves, and branches die all of a sudden. Later symptoms are found in August-September. Leaves of the infected trees show reddish discoloration and drop down. Both symptoms are connected with lesions (wet, necrotic in appearance at stem bases of the trees.Disease spread was 2-3% in most gardens, only in an apple orchard in Bjaga (Plovdiv region it was up to 8-10%. Morphologically, the isolates acquired from

  1. Decolorization of reactive brilliant red K-2BP by white rot fungus under sterile and non-sterile conditions

    Institute of Scientific and Technical Information of China (English)

    GAO Da-wen; WEN Xiang-hua; QIAN Yi

    2006-01-01

    Almost all the studies both domestic and international using white rot fungus for dye wastewater treatment are performed under sterile conditions. However, it is obviously unpractical that wastewater with dyes is treated under sterile conditions. A feasible study was made for using white rot fungus Phanerochaete chrysosporium to degrade reactive brilliant red K-2BP dye under non-sterile conditions. The results showed that there was no decolorizing effect under non-sterile condition if white rot fungus was incubated under non-sterile condition, and the decolorization was always near to 0% during decolorizing test for 3 d; in the meantime, a lot of yeast funguses were found in liquid medium when white rot fungus was incubated under non-sterile conditions; however, if white rot fungus was incubated under sterile condition firstly, its decolorization was above 90% under non-sterile condition, which was similar to that of sterile condition. So we point out that the treating process for wastewater with dyes should be divided into two stages. The first stage is that white rot fungus should be incubated under sterile conditions, and the second stage is that reactive brilliant red K-2BP is decolorized under non-sterile conditions. The method not only save the operation cost which decolorizing reactive brilliant red K-2BP under sterile condition, but also provide the feasibility for using white rot fungus to degrade wastewater with dyes under non-sterile conditions.

  2. Polycyclic aromatic hydrocarbon degradation by the white rot fungus Bjerkandera sp. strain BOS55.

    NARCIS (Netherlands)

    Kotterman, M.J.J.

    1998-01-01

    Outline of this thesisIn this thesis the conditions for optimal PAH oxidation by the white rot fungus Bjerkandera sp. strain BOS55 were evaluated. In Chapter 2, culture conditions like aeration and cosubstrate concentrations, which influenced the oxidation of the PAH compound anthra

  3. Biodegradation of pentachlorophenol by the white rot fungus Phanerochaete chrysosporium (1988)

    Science.gov (United States)

    Extensive biodegradation of pentachlorophenol (PCP) by the white rot fungus Phanerochaete chrysosporium was demonstrated by the disappearance and mineralization of [14C]PCP in nutrient nitrogen-limited culture. Mass balance analyses demonstrated the formation of water-soluble met...

  4. Mechanisms of qualitative and quantitative resistance to Aphanomyces root rot in alfalfa

    Science.gov (United States)

    Aphanomyces root rot (ARR), caused by Aphanomyces euteiches, is one of the most important diseases of alfalfa (Medicago sativa) in the United States. Two races of the pathogen are currently recognized. Most modern alfalfa cultivars have high levels of resistance to race 1 but few cultivars have resi...

  5. Pythium and Fusarium species causing seed rot and damping-off of alfalfa

    Science.gov (United States)

    Seed rot and damping-off is an important disease of alfalfa, severely affecting stand establishment when conditions favor the disease. This disease may have been overlooked as a cause of poor stand establishment and reduced vigor of adult plants. Globally, 15 Pythium species have been found to cause...

  6. Combining fuzzy set theory and nonlinear stretching enhancement for unsupervised classification of cotton root rot

    Science.gov (United States)

    Cotton root rot is a destructive disease affecting cotton production. Accurate identification of infected areas within fields is useful for cost-effective control of the disease. The uncertainties caused by various infection stages and newly infected plants make it difficult to achieve accurate clas...

  7. Controlled release fungicide, soil amendments and biofumigation effects on cotton root rot suppression

    Science.gov (United States)

    The cotton root rot pathogen (Phymatotrichopsis ominora) causes major losses in cotton produced in the Southwest. Granular controlled release formulations (CRF) of the fungicide, Propiconazole, developed to be soil applied at planting were studied at 1.0 and 3.0 lb a.i./ac. applications and with tw...

  8. A postharvest fruit rot of apple caused by Lambertella sp. in Washington state

    Science.gov (United States)

    During surveys for postharvest diseases of apples in 2003-05, a fruit rot disease was observed on stored apples collected from packinghouses. The disease appeared to originate from infections of wounds on the fruit, and lesions were brown and decayed tissues were spongy. Lambertella sp. was consiste...

  9. Rhizosphere ecology and phytoprotection in soils naturally suppressive to Thielaviopsis black root rot of tobacco.

    Science.gov (United States)

    Almario, Juliana; Muller, Daniel; Défago, Geneviève; Moënne-Loccoz, Yvan

    2014-07-01

    Soil suppressiveness to disease is an intriguing emerging property in agroecosystems, with important implications because it enables significant protection of susceptible plants from soil-borne pathogens. Unlike many soils where disease suppressiveness requires crop monoculture to establish, certain soils are naturally suppressive to disease, and this type of specific disease suppressiveness is maintained despite crop rotation. Soils naturally suppressive to Thielaviopsis basicola-mediated black root rot of tobacco and other crops occur in Morens region (Switzerland) and have been studied for over 30 years. In Morens, vermiculite-rich suppressive soils formed on morainic deposits while illite-rich conducive soils developed on sandstone, but suppressiveness is of microbial origin. Antagonistic pseudomonads play a role in black root rot suppressiveness, including Pseudomonas protegens (formerly P. fluorescens) CHA0, a major model strain for research. However, other types of rhizobacterial taxa may differ in prevalence between suppressive and conducive soils, suggesting that the microbial basis of black root rot suppressiveness could be far more complex than solely a Pseudomonas property. This first review on black root rot suppressive soils covers early findings on these soils, the significance of recent results, and compares them with other types of suppressive soils in terms of rhizosphere ecology and plant protection mechanisms.

  10. Indirect selection for resistance to ear rot and leaf diseases in maize lines using biplots.

    Science.gov (United States)

    Pereira, G S; Camargos, R B; Balestre, M; Von Pinho, R G; C Melo, W M

    2015-09-21

    Leaf disease and ear rot have caused reductions in maize yield in Brazil and other producer countries. Therefore, the aims of this study were to analyze the association between husked ear yield and the severity of maize white spot, gray leaf spot, helminthosporium, and ear rot caused by Fusarium verticillioides and Diplodia maydis using biplots in a mixed-model approach. The responses of 238 lines introduced to Brazil and four controls were evaluated using an incomplete block design with three replicates in two locations: Lavras and Uberlândia, Minas Gerais, Brazil. Two experiments were conducted in each location, one with F. verticillioides and the other with D. maydis. The mixed models elucidated the relationship between yield, leaf disease, and ear disease. Significant genotype x environment and genotype x pathogen interactions were observed. In conclusion, husked ear yield is more associated with ear rot than with the leaf diseases evaluated, justifying the indirect selection for resistance to kernel rot in maize-F. verticillioides and maize-D. maydis pathosystems by yield evaluation.

  11. Management of Phytophthora cinnamomi root rot disease of blueberry with gypsum and compost

    Science.gov (United States)

    Root rot disease of blueberry caused by Phytophthora cinnamomi is becoming more prevalent as a consequence of widespread adoption of drip irrigation. This creates higher moisture content in the root zone more conducive for the pathogen. Options for disease control under organic management are limi...

  12. Foliar application of β-D-glucan nanoparticles to control rhizome rot disease of turmeric.

    Science.gov (United States)

    Anusuya, Sathiyanarayanan; Sathiyabama, Muthukrishnan

    2015-01-01

    The soilborne Oomycete Pythium aphanidermatum is the causal agent of rhizome rot disease, one of the most serious threats to turmeric crops. At present, effective fungicides are not available. Researches on nanoparticles in a number of crops have evidenced the positive changes in gene expression indicating their potential use in crop improvement. Hence, experiments were carried out to determine the effect of β-D-glucan nanoparticles (nanobiopolymer) in protection of turmeric plants against rot disease by the way of products that reinforce plant's own defense mechanism. Foliar spray of β-D-glucan nanoparticles (0.1%, w/v) elicited marked increase in the activity of defense enzymes such as peroxidases (E.C.1.11.1.7), polyphenol oxidases (E.C.1.14.18.1), protease inhibitors (E.C.3.4.21.1) and β-1,3-glucanases (E.C.3.2.1.39) at various age levels. Constitutive and induced isoforms of these enzymes were investigated during this time-course study. β-D-glucan nanoparticles (GNPs) significantly reduced the rot incidence offering 77% protection. Increased activities of defense enzymes in GNPs-applied turmeric plants may play a role in restricting the development of disease symptoms. These results demonstrated that GNPs could be used as an effective resistance activator in turmeric for control of rhizome rot disease.

  13. Status of maize stalk rot complex in western belts of Nepal and its integrated management

    Directory of Open Access Journals (Sweden)

    Subash Subedi

    2016-12-01

    Full Text Available Maize stalk rot complex is becoming a serious threat for maize growing areas of Nepal. A field monitoring for maize stalk rot complex was done during crop season (August, 2016 covering 10 farmers field each of Surkhet, Banke, Dang, Chitwan and Nawalparasi districts. Maize crop showed highly susceptible reaction to the disease at western belts of Dang and susceptible reaction was marked in Chitwan and Nawalparasi districts while the disease effect was mild at Banke and Surkhet district. Most of the plant diseases managed successfully through the application of bio-control agents, host resistance, chemicals and other different cultural control methods. The result of field experiment conducted at Dang showed that all the treatments had significant (P≤0.05 effect on percent disease index (PDI and crop yield over farmers practice to control maize stalk rot. The higher percent disease control (52.36% and yield increase (40.29% were recorded from the plot sprayed with streptocyclin @ 2 g L-1 and insecticide (cypermethrin + chloropyrifos @ 2.5 ml L-1 of water during knee height and subsequent spray after 15 days interval as compared to farmers practice. Out of 30 genotypes, Rampur composit, Arun 2, Rampur 34, RamS03F08, TLBRS07F16 and Rampur 24 were found resistant against stalk rot complex with higher yield at Rampur Chitwan.

  14. Diversity and biological control of Sclerotium rolfsii, causal agent of stem rot of groundnut

    NARCIS (Netherlands)

    Lê, N.C.

    2011-01-01

    Groundnut (Arachis hypogaea L.) is an economically important legume crop in Vietnam and many other countries worldwide. Stem rot disease, caused by the soil-borne fungus Sclerotium rolfsii Sacc., is a major yield limiting factor in groundnut cultivation. Current control methods

  15. Diallel analysis of resistance to fusarium ear rot and fumonisin contamination in maize

    Science.gov (United States)

    The fungus Fusarium verticillioides infects maize ears and kernels, resulting in Fusarium ear rot disease, reduced grain yields, and contamination of grain with the mycotoxin fumonisin. Typical hybrid maize breeding programs involve selection for both favorable inbred and hybrid performance, and the...

  16. Loop-mediated isothermal amplification (LAMP) based detection of Colletotrichum falcatum causing red rot in sugarcane

    Science.gov (United States)

    Red rot, caused by Colletotrichum falcatum, is a destructive disease prevalent in most sugarcane-producing countries. Disease-free sugarcane planting materials are essential as the pathogen spreads primarily through infected setts. The present study was undertaken to develop loop-mediated isothermal...

  17. Root rot of peas in the Netherlands: fungal pathogens, inoculum potential and soil receptivity.

    NARCIS (Netherlands)

    Oyarzun, P.J.

    1994-01-01

    Fungi associated to pea (Pisum sativum L.) root rot were studied. Fusarium and Oomycetes were most common. Fusarium solani f. sp. pisi, Fsp, was widely distributed and the most frequent fungus in roots of diseased crops. The pathogens Thielaviopsis basicola , Tb, and Aphanomyces euteiches, Ae, wer

  18. Control of potato soft rot caused by Pectobacterium carotovorum and Pectobacterium atrosepticum by Moroccan actinobacteria isolates.

    Science.gov (United States)

    Baz, M; Lahbabi, D; Samri, S; Val, F; Hamelin, G; Madore, I; Bouarab, K; Beaulieu, C; Ennaji, M M; Barakate, Mustapha

    2012-01-01

    Pectobacterium carotovorum and Pectobacterium atrosepticum are dreadful causal agents of potato soft rot. Actually, there are no efficient bactericides used to protect potato against Pectobacterium spp. Biological control using actinobacteria could be an interesting approach to manage this disease. Thus, two hundred actinobacteria isolated from Moroccan habitats were tested for their ability to inhibit in vitro 4 environmental Pectobacterium strains and the two reference strains (P. carotovorum CFBP 5890 and P. atrosepticum CFBP 5889). Eight percent of these isolates were active against at least one of the tested pathogens and only 2% exhibited an antimicrobial activity against all tested Pectobacterium strains. Four bioactive isolates having the greatest pathogen inhibitory capabilities and classified as belonging to the genus Streptomyces species through 16S rDNA analysis were subsequently tested for their ability to reduce in vivo soft rot symptoms on potato slices of Bintje, Yukon Gold, Russet and Norland cultivars caused by the two pathogens P. carotovorum and P. atrosepticum. This test was carried out by using biomass inoculums and culture filtrate of the isolates as treatment. Among these, strain Streptomyces sp. OE7, reduced by 65-94% symptom severity caused by the two pathogens on potato slices. Streptomyces OE7 showed a potential for controlling soft rot on potato slices and could be useful in an integrated control program against potato soft rot pathogens in the objective to reduce treatments with chemical compounds.

  19. Armillaria root rot of tea in Kenya. Characterization of the pathogen and approaches to disease management

    NARCIS (Netherlands)

    Otieno, W.

    2002-01-01

    The rare occurrence of basidiomata and rhizomorphs constrains diagnosis of Armillaria root rot and identification of Armillaria species in Africa. This has had a negative impact on taxonomic research on the genus Armillaria in the continent, where the existence of various genetic groups of the fungu

  20. First report of frosty pod rot caused by Moniliophthora roreri on cacao in Bolivia

    Science.gov (United States)

    Frosty pod rot (FPR) is a devastating cacao disease caused by the basidiomycete Moniliophthora roreri (Aime and Phillips-Mora, 2005). The disease is confined to 13 countries in Central and South America and constitutes a permanent threat for cacao cultivation worldwide. In July 2012, FPR was detect...

  1. Phytophthora megakarya, a causal agent of black pod rot in Africa

    Science.gov (United States)

    In most parts of the world where Theobroma cacao is grown, Phytophthora palmivora is the major concern for causing black pod rot (BPR). Phytophthora megakarya, on the other hand, occurs only in Africa, but represents a major threat to cacao production, the countries of West Africa being the largest ...

  2. Influence of fruit age on Phytophthora fruit rot development on susceptible and resistant watermelon germplasm

    Science.gov (United States)

    Phytophthora fruit rot of watermelon caused by Phytophthora capsici is an emerging disease in the southeastern United States. The disease has resulted in severe losses to watermelon growers in GA, SC, and NC, and is considered a top-research priority by the National Watermelon Association. We releas...

  3. Podridão do pimentão Black rot of green pepper fruits

    Directory of Open Access Journals (Sweden)

    A. P. Viégas

    1962-01-01

    Full Text Available Podridão do pimentão ainda verde, causada por Diaporthe phaseolorum, foi observada no Brasil, ao que parece, pela primeira vez.Black rot green fruits of Capsicum annuum L. caused by Diaporthe phaseolorum is reported for Brasil for the first time.

  4. POTATO RING ROT PATHOGEN DETECTION BY POLYMERASE CHAIN REACTION IN POTATO TUBERS

    Directory of Open Access Journals (Sweden)

    Shafikova T.N.

    2008-10-01

    Full Text Available Bacterial ring rot caused by Clavibacter michiganensis ssp. sepedonicus is a widespread disease of potato resulting in significant economic lost in agriculture and seed growing. A latent form of this infection makes difficulties for diagnostics and facilitates the quick disease propagation. Polymerase chain reaction is the best method for the disease control.

  5. Biological pretreatment of corn stover with white-rot fungus for improved enzymatic hydrolysis

    Science.gov (United States)

    Biological pretreatment of lignocellulosic biomass by white-rot fungus can represent a low-cost and eco-friendly alternative to harsh physical, chemical or physico-chemical pretreatment methods to facilitate enzymatic hydrolysis. However, fungal pretreatment can cause carbohydrate loss and it is, th...

  6. Efficacy of management tools for control of Pythium root rot of Douglas-fir seedlings, 2013

    Science.gov (United States)

    This study was conducted as part of the IR-4 Ornamental Horticulture program to evaluate fungicides and biopesticides for management of root, crown and stem rots of ornamental plants caused by Pythium species. Pythium species used in this study were P. vipa (isolate 09), P. dissotocum (isolate 41-08...

  7. Mechanism of antibacterial activity of the white-rot fungus Hypholoma fasciculare colonizing wood

    NARCIS (Netherlands)

    De Boer, W.; Folman, L.B.; Klein Gunnewiek, P.J.A.; Svensson, T.; Bastviken, D.; Oberg, G.; Del Rio, J.C.; Boddy, L.

    2010-01-01

    In a previous study it was shown that the number of wood-inhabiting bacteria was drastically reduced after colonization of beech (Fagus sylvatica) wood blocks by the white-rot fungus Hypholoma fasciculare, or sulfur tuft (Folman et al. 2008). Here we report on the mechanisms of this fungal-induced a

  8. Characterization of Basidiomycetes associated with wood rot of citrus in southern Italy.

    Science.gov (United States)

    Roccotelli, Angela; Schena, Leonardo; Sanzani, Simona M; Cacciola, Santa O; Mosca, Saveria; Faedda, Roberto; Ippolito, Antonio; di San Lio, Gaetano Magnano

    2014-08-01

    The characterization of Basidiomycetes associated with wood rots in commercial citrus orchards in southern Italy revealed that both white and brown rot fungi are implicated in this disease. Fomitiporia mediterranea was the most prevalent species causing a white rot, followed by Fomitopsis sp. which, by contrast, was associated with brown rot wood decay. Furthermore, Phellinus spp. and other nonidentified basidiomycetous fungi showing genetic affinity with the genera Phellinus and Coniophora were occasionally isolated. Artificial inoculations on lemon (Citrus limon) branches showed a faster wood colonization by Fomitopsis sp. compared with F. mediterranea, indicating that the former species as a potentially serious pathogen of citrus trees. The analysis of F. mediterranea internal transcribed spacer (ITS) sequences revealed a high level of genetic variability, with 13 genotypes which were both homozygous (6 genotypes) and heterozygous (7 genotypes). The presence of heterozygous genomes based on ITS sequences has never been reported before for F. mediterranea. This, together with the high frequency of basidiomata on infected wood, unambiguously confirms the outcrossing nature of reproduction in F. mediterranea and the primary role of basidiospores in the dissemination of inoculum. Similarly, high genetic variability was observed analyzing Fomitopsis sp. Because basidiomata of this fungus have not been observed on citrus trees, it can be hypothesized that basidiospores are produced on alternative host plants.

  9. Improving ruminal degradability of oil palm fronds using white rot fungi

    NARCIS (Netherlands)

    Rahman, M.M.; Lourenco, M.; Hassim, H.A.; Baars, J.J.P.; Sonnenberg, A.S.M.; Cone, J.W.; Boever, de J.L.; Fievez, V.

    2011-01-01

    The use of oil palm fronds (OPF) in livestock production is limited as up to 0.20 of their dry biomass is lignin. White rot fungi (WRF) are very effective basidiomycetes for biological pre-treatment as they degrade lignin extensively. Ten WRF were screened for their potential to increase OPF digesti

  10. Modification of wheat straw lignin by solid state fermentation with white-rot fungi

    NARCIS (Netherlands)

    Dinis, M.J.; Bezerra, R.M.F.; Nunes, F.; Dias, A.A.; Guedes, C.; Ferreira, L.M.M.; Cone, J.W.; Marques, G.S.M.; Barros, A.R.N.; Rodrigues, M.A.M.

    2009-01-01

    The potential of crude enzyme extracts, obtained from solid state cultivation of four white-rot fungi (Trametes versicolor, Bjerkandera adusta, Ganoderma applanatum and Phlebia rufa), was exploited to modify wheat straw cell wall. At different fermentation times, manganese-dependent peroxidase (MnP)

  11. Stenotrophomonas maltophilia: a new potential biocontrol agent of Ralstonia solanacearum, causal agent of potato brown rot

    NARCIS (Netherlands)

    Messiha, N.A.S.; Diepeningen, van A.D.; Farag, N.S.; Abdallah, S.A.; Janse, J.D.; Bruggen, van A.H.C.

    2007-01-01

    Stenotrophomonas maltophilia was isolated from the rhizosphere of eggplant in the Nile Delta of Egypt, and its antagonistic potential against Ralstonia solanacearum race 3 biovar 2, the causal agent of potato brown rot, was in vitro evaluated on KB agar medium and in vivo on potato plants. In vitro,

  12. Potato brown rot incidence and severity under different management and amendment regimes in different soil types

    NARCIS (Netherlands)

    Messiha, N.A.S.; Bruggen, van A.H.C.; Diepeningen, van A.D.; Vos, de O.J.; Termorshuizen, A.J.; Tjou-Tam-Sin, N.N.A.; Janse, J.D.

    2007-01-01

    Ralstonia solanacearum race 3 biovar 2, the causative agent of potato brown rot (bacterial wilt), is an economically important disease in tropical, subtropical and temperate regions of the world. In view of previous reports on suppression of the disease by organic amendments, and the expansion of or

  13. Fruit age and development of Phytophthora fruit rot on resistant and susceptible watermelon lines

    Science.gov (United States)

    Phytophthora fruit rot caused by Phytophthora capsici is an emerging disease in most watermelon producing regions of Southeast U.S. and has resulted in severe losses to watermelon growers especially in GA, SC, and NC. We recently released four germplasm lines (USVL203-PFR, USVL020-PFR, USVL782-PFR,...

  14. Evaluation of watermelon varieties for tolerance to powdery mildew and Phytophthora fruit rot, 2014

    Science.gov (United States)

    This experiment was conducted at the U.S. Vegetable Laboratory farm in Charleston, SC. The soil was Yonges loamy fine sand. This study was undertaken to determine the performance of seeded and seedless commercial watermelon varieties for tolerance to powdery mildew (PM) and Phytophthora fruit rot as...

  15. Cylindrocarpon root rot: multi-gene analysis reveals novel species within the Ilyonectria radicicola species complex

    NARCIS (Netherlands)

    Cabral, A.; Groenewald, J.Z.; Rego, C.; Oliveira, H.; Crous, P.W.

    2012-01-01

    Ilyonectria radicicola and its Cylindrocarpon-like anamorph represent a species complex that is commonly associated with root rot disease symptoms on a range of hosts. During the course of this study, several species could be distinguished from I. radicicola sensu stricto based on morphological and

  16. First report of truncatella angustata causing postharvest rot on ‘topaz’ apples in the Netherlands

    NARCIS (Netherlands)

    Wenneker, M.; Pham, K.T.K.; Boekhoudt, L.C.; Boer, de F.A.; Leeuwen, van P.J.; Hollinger, T.C.; Thomma, B.P.H.J.

    2017-01-01

    In the Netherlands, about 30% of the organic apple (Malus domestica Borkh.) production consists of apple scab resistant cultivars, such as Topaz and Santana. However, organic ‘Topaz’ apples show a high incidence of fungal rot after storage. Hot-water treatment (HWT) of freshly harvested apple fru

  17. Rhizoctonia root rot resistance in experimental sugar beet cultivars in Twin Falls County, ID, 2012

    Science.gov (United States)

    Rhizoctonia root rot continues to be a concerning problem in sugar beet production areas. To investigate resistance to this disease in 26 experimental sugar beet cultivars, field studies were conducted with three Rhizoctonia solani AG-2-2 IIIB strains. Based on means for the 26 cultivars, surface ...

  18. Rhizoctonia root rot resistance in commercial sugar beet cultivars in Twin Falls County, ID, 2012

    Science.gov (United States)

    Rhizoctonia root rot continues to be a concerning problem in sugar beet production areas. To investigate resistance to this disease in 26 commercial sugar beet cultivars, field studies were conducted with three Rhizoctonia solani AG-2-2 IIIB strains. Based on means for the 26 cultivars, surface ro...

  19. Agrobacterium-mediated transformation of the white-rot fungus Physisporinus vitreus.

    Science.gov (United States)

    Schubert, M; Stührk, C; Fuhr, M J; Schwarze, F W M R

    2013-11-01

    The biotechnologically important white-rot fungus Physisporinus vitreus was co-cultivated with Agrobacterium tumefaciens AGL-1 carrying plasmids with nourseothricin resistance as the selectable marker gene and red fluorescence protein as a visual marker. Mitotically stable transformed isolates were obtained showing red fluorescence protein activity.

  20. Incidence and Severity of Maize Ear Rots and Factors Responsible for Their Occurrence in Uganda

    Science.gov (United States)

    Bigirwa, G.; Kaaya, A. N.; Sseruwu, G.; Adipala, E.; Okanya, S.

    Eleven major maize growing districts of Uganda were surveyed for three consecutive seasons between 2002 and 2003 to establish maize ear rot incidence and severity. Sternocarpella maydis and Fusarium species particularly F. graminearum and F. verticillioides were the identified maize ear rot causing fungi. Incidence of S. maydis ranged from 2.5 to 32.5% while that of Fusarium sp. was in the range of 1.9 and 15.3%. In districts of higher altitude (above 1,800 m above sea level) F. graminearum dominated in all seasons while in districts with an altitude between 900 and 1,500 m above sea level, S. maydis was the major cause of ear rots. This observation was attributed to differences in temperature, altitude and rainfall. There was a strong positive correlation (p = 0.001) between incidence and severity for S. maydis and a weak one for Fusarium sp. because the latter would rarely infect the entire cob unlike the former. All farmers expressed concern about the quality of maize due to ear rots and sort out infected grain after harvest. However, varied uses of infected grain were noted. For example, in Kapchorwa district 82% of the respondents indicated that the infected grain is used for making local brew because the moulds give it a good taste and aroma, while in Kamuli and Masaka districts, 36% use it as animal feed ingredient. This indicates that people and animals could be ingesting mycotoxins unknowingly thus the need for sensitization programmes.

  1. Decolorization of reactive brilliant red K-2BP with the white- rot fungi under non-sterile conditions

    Institute of Scientific and Technical Information of China (English)

    GAO Dawen; WEN Xianghua; QIAN Yi

    2004-01-01

    @@ In recent years, many researches indicate that white rot fungus is a promising microbe in wastewater treatment. The basidiomycete Phanerochaete chrysosporium in white rot fungi is the most extensively studied and discussed[1]. The extracellular ligninolytic enzymes of white rot fungi have the ability to degrade a wide spectrum of recalcitrant organo-pollutants such as chlorinated phenols and various types of synthetic dyes because of their nonspecific characteristics[2-6]. And some significant mineralization (20%-48%) was observed during degradation of azo dyes[7].

  2. ISOLATION AND IDENTIFICATION OF BACTERIAL CAUSED SOFT ROT DISEASE ON CARROT (Daucus carota L.) LOCAL VARIETY IN BALI

    OpenAIRE

    Ni Wayan Desi Bintari; Retno Kawuri; Meitini Wahyuni Proborini

    2015-01-01

    Soft rot bacteria infection in carrot tuber (D. carota L.) causes severe economic losses. Soft rot disease can be caused by various bacteria belonging to Enterobacteriaceae. This study aimed to isolate and identify bacteria as causal agent of soft rot disease in local carrot variety in Bali. Samples were collected at Badung Tradisional Market, Denpasar, Bali. Isolation was carried out by serial dilution method (Platting Method). Eight bacteria (BL1, BL2, BL3, BL4, BL5, BL6, BL7 and BL8) were ...

  3. Susceptibility of Maize to Stalk Rot Caused by Fusarium graminearum Deoxynivalenol and Zearalenone Mutants.

    Science.gov (United States)

    Quesada-Ocampo, L M; Al-Haddad, J; Scruggs, A C; Buell, C R; Trail, F

    2016-08-01

    Fusarium graminearum is a destructive pathogen of cereals that can cause stalk rot in maize. Stalk rot results in yield losses due to impaired grain filling, premature senescence, and lodging, which limits production and harvesting of ears. In addition, mycotoxins can make infected tissues unfit for silage. Our objectives were to evaluate the natural variation in stalk rot resistance among maize inbreds, to establish whether deoxynivalenol (DON)- and zearalenone (ZEA)-deficient strains are pathogenic on a panel of diverse inbreds, and to quantify the accumulation of DON in infected stalk tissue. Wild-type F. graminearum and mycotoxin mutants (DON and ZEA) were used to separately inoculate stalks of 9-week-old plants of 20 inbreds in the greenhouse. Plants were evaluated for lesion area at the inoculation point at 0, 2, 14, and 28 days postinoculation and tissues around lesions were sampled to determine the DON content. Regardless of their ability to produce DON or ZEA, all tested F. graminearum strains caused stalk rot; however, significant differences in disease levels were detected. Among the tested inbreds, Mp717 was resistant to all three F. graminearum strains while Mp317 and HP301 were only partially resistant. Accumulation of DON was significantly lower in infected stalks of the resistant and partially resistant inbreds than the susceptible inbreds. Analysis of the 20 inbreds using data from 17 simple-sequence repeats revealed population structure among the individuals; however, there was no association between genetic clustering and stalk rot resistance. These findings are an additional step toward breeding maize inbreds suitable for planting in fields infested with F. graminearum.

  4. Scholarly context not found: one in five articles suffers from reference rot.

    Directory of Open Access Journals (Sweden)

    Martin Klein

    Full Text Available The emergence of the web has fundamentally affected most aspects of information communication, including scholarly communication. The immediacy that characterizes publishing information to the web, as well as accessing it, allows for a dramatic increase in the speed of dissemination of scholarly knowledge. But, the transition from a paper-based to a web-based scholarly communication system also poses challenges. In this paper, we focus on reference rot, the combination of link rot and content drift to which references to web resources included in Science, Technology, and Medicine (STM articles are subject. We investigate the extent to which reference rot impacts the ability to revisit the web context that surrounds STM articles some time after their publication. We do so on the basis of a vast collection of articles from three corpora that span publication years 1997 to 2012. For over one million references to web resources extracted from over 3.5 million articles, we determine whether the HTTP URI is still responsive on the live web and whether web archives contain an archived snapshot representative of the state the referenced resource had at the time it was referenced. We observe that the fraction of articles containing references to web resources is growing steadily over time. We find one out of five STM articles suffering from reference rot, meaning it is impossible to revisit the web context that surrounds them some time after their publication. When only considering STM articles that contain references to web resources, this fraction increases to seven out of ten. We suggest that, in order to safeguard the long-term integrity of the web-based scholarly record, robust solutions to combat the reference rot problem are required. In conclusion, we provide a brief insight into the directions that are explored with this regard in the context of the Hiberlink project.

  5. A large factory-scale application of selected autochthonous lactic acid bacteria for PDO Pecorino Siciliano cheese production.

    Science.gov (United States)

    Guarcello, Rosa; Carpino, Stefania; Gaglio, Raimondo; Pino, Alessandra; Rapisarda, Teresa; Caggia, Cinzia; Marino, Giovanni; Randazzo, Cinzia L; Settanni, Luca; Todaro, Massimo

    2016-10-01

    The main hypothesis of this study was that the autochthonous lactic acid bacteria (LAB) selected for their dairy traits are able to stabilize the production of PDO (Protected Denomination of Origin) Pecorino Siciliano cheese, preserving its typicality. The experimental plan included the application of a multi-strain lactic acid bacteria (LAB) culture, composed of starter (Lactococcus lactis subsp. lactis CAG4 and CAG37) and non starter (Enterococcus faecalis PSL71, Lactococcus garviae PSL67 and Streptococcus macedonicus PSL72) strains, during the traditional production of cheese at large scale level in six factories located in different areas of Sicily. The cheese making processes were followed from milk to ripened cheeses and the effects of the added LAB were evaluated on the microbiological, chemico-physical and sensorial characteristics of the final products. Results highlighted a high variability for all investigated parameters and the dominance of LAB cocci in bulk milk samples. The experimental curds showed a faster pH drop than control curds and the levels of LAB estimated in 5-month ripened experimental cheeses (7.59 and 7.27 Log CFU/g for rods and cocci, respectively) were higher than those of control cheeses (7.02 and 6.61 Log CFU/g for rods and cocci, respectively). The comparison of the bacterial isolates by randomly amplified polymorphic DNA (RAPD)-PCR evidenced the dominance of the added starter lactococci over native milk and vat LAB, while the added non starter LAB were found at almost the same levels of the indigenous strains. The sensory evaluation showed that the mixed LAB culture did not influence the majority of the sensory attributes of the cheeses and that each factory produced cheeses with unique characteristics. Finally, the multivariate statistical analysis based on all parameters evaluated on the ripened cheeses showed the dissimilarities and the relationships among cheeses. Thus, the main hypothesis of the work was accepted since the

  6. Biodegradation of 1,2,3,4-tetrachlorodibenzo-p-dioxin in liquid broth by brown-rot fungi.

    Science.gov (United States)

    Perlatti, Bruno; da Silva, Maria Fátima das Graças Fernandes; Fernandes, João Batista; Forim, Moacir Rossi

    2013-11-01

    Dioxins are a class of extremely hazardous molecules that might pose a threat to the environment. This work evaluated the microbial degradation of 1,2,3,4-tetrachlorodibenzo-p-dioxin (1,2,3,4-TCDD), in liquid broth using three brown-rot fungi and one white-rot fungi as control. A fast and reliable extraction method with recoveries of over 98% together with a validated GC-MS method was developed, and applied to quantify 1,2,3,4-TCDD in liquid broth, mycelia and reaction flask, with detection limits of 10 ppb. Among the four strains tested, brown-rot fungus Aspergillus aculeatus showed best results, removing up to 21% of dioxin after 30-day incubation. The results open both a path for biotechnological interest in bioremediation purposes and environmental behavior studies by using brown-rot fungus.

  7. BIODEGRADATION OF ENVIRONMENTAL POLLUTANTS BY THE WHITE ROT FUNGUS PHANEROCHAETE CHRYSOPORIUM: INVOLVEMENT OF THE LIGNIN DEGRADING SYSTEM

    Science.gov (United States)

    The white-rot fungus Phanrochaete chrysosporium has the ability to degrade a wide variety of structurally diverse organic compounds, including a number of environmentally persistent organopollutants. The unique biodegradative abilities of this fungus appears to be depend...

  8. NODC Standard Format Pathology Data Sets (1973-1975): Fin Rot (F006) Data (NODC Accession 0014147)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Fin Rot (F006) dataset contains data from examinations of the biological condition of diseased fishes. For tow samples collected, data include: total number of...

  9. Growth kinetics and efficacy as parameters for ranking and selecting biocontrol agents that reduce pink rot in stored potatoes

    Science.gov (United States)

    Increased production of organic agricultural products and the relative ineffectiveness of traditional control measures support development of new biocontrol technologies for use against pink rot infections in storage. The microbiota of 84 different agricultural soils was individually transferred to...

  10. Associations of planting date, drought stress, and insects with Fusarium ear rot and fumonisin B1 contamination in California maize.

    Science.gov (United States)

    Parsons, M W; Munkvold, G P

    2010-05-01

    Fusarium ear rot, caused by Fusarium verticillioides, is one of the most common diseases of maize, causing yield and quality reductions and contamination of grain by fumonisins and other mycotoxins. Drought stress and various insects have been implicated as factors affecting disease severity. Field studies were conducted to evaluate the interactions and relative influences of drought stress, insect infestation, and planting date upon Fusarium ear rot severity and fumonisin B1 contamination. Three hybrids varying in partial resistance to Fusarium ear rot were sown on three planting dates and subjected to four irrigation regimes to induce differing levels of drought stress. A foliar-spray insecticide treatment was imposed to induce differing levels of insect injury. Populations of thrips (Frankliniella spp.), damage by corn earworm (Helicoverpa zeae), Fusarium ear rot symptoms, and fumonisin B1 levels were assessed. There were significant effects of hybrid, planting date, insecticide treatment, and drought stress on Fusarium ear rot symptoms and fumonisin B1 contamination, and these factors also had significant interacting effects. The most influential factors were hybrid and insecticide treatment, but their effects were influenced by planting date and drought stress. The more resistant hybrids and the insecticide-treated plots consistently had lower Fusarium ear rot severity and fumonisin B1 contamination. Later planting dates typically had higher thrips populations, more Fusarium ear rot, and higher levels of fumonisin B1. Insect activity was significantly correlated with disease severity and fumonisin contamination, and the correlations were strongest for thrips. The results of this study confirm the influence of thrips on Fusarium ear rot severity in California, USA, and also establish a strong association between thrips and fumonisin B1 levels.

  11. Survey of Basal Stem Rot Disease on Oil Palms (Elaeis guineensis Jacq.) in Kebun Bukit Kijang,North Sumatera, Indonesia

    Science.gov (United States)

    Lisnawita; Hanum, H.; Tantawi, A. R.

    2016-08-01

    Basal stem rot disease caused by Ganoderma sp. is a significant disease on oil palm plantations in Indonesia, especially in North Sumatera. Currently, the pathogen does not only attack the plants that have produced (old plants) but also attacks the plants that have not produced in the first generation yet. A survey of the distribution of the basal stem rot disease in the plantation of the community has been completed in order to illustrate the distribution and the incidence of the basal stem rot disease in 5 locations of the oil palm plantation of the community in Desa Bukit Kijang, Region of Asahan, North Sumatera, Indonesia. From the research, it is revealed that the basal stem rot disease has spread to all of the observed locations with the level of disease incidence between 0.71% in Kebun Bukit Kijang 3 to 50% in the 17 years old oil palm in Kebun Bukit Kijang 4 and Bukit Kijang 5. The observable symptoms of the basal stem rot disease are chlorotic leaves, the appearance of fruiting body, collapsed plants, and the existence of holes on the basal stem. The incidence of basal stem rot disease is higher on land due to a high sand content (>50%).

  12. Interactions between cranberries and fungi: the proposed function of organic acids in virulence suppression of fruit rot fungi

    Directory of Open Access Journals (Sweden)

    Mariusz eTadych

    2015-08-01

    Full Text Available Cranberry fruit are a rich source of bioactive compounds that may function as constitutive or inducible barriers against rot-inducing fungi. The content and composition of these compounds change as the season progresses. Several necrotrophic fungi cause cranberry fruit rot disease complex. These fungi remain mostly asymptomatic until the fruit begins to mature in late August. Temporal fluctuations and quantitative differences in selected organic acid profiles between fruit of six cranberry genotypes during the growing season were observed. The concentration of benzoic acid in fruit increased while quinic acid decreased throughout fruit development. In general, more rot-resistant genotypes showed higher levels of benzoic acid early in fruit development and more gradual decline in quinic acid levels than that observed in the more rot-susceptible genotypes. We evaluated antifungal activities of selected cranberry constituents and found that most bioactive compounds either had no effects or stimulated growth or reactive oxygen species (ROS secretion of four tested cranberry fruit rot fungi, while benzoic acid and quinic acid reduced growth and suppressed secretion of ROS by these fungi. We propose that variation in the levels of ROS suppressive compounds, such as benzoic and quinic acids, may influence virulence by the fruit rot fungi. Selection for crops that maintain high levels of virulence suppressive compounds could yield new disease resistant varieties. This could represent a new strategy for control of disease caused by necrotrophic pathogens that exhibit a latent or endophytic phase.

  13. Efficacy of Origanum vulgare L. and Rosmarinus officinalis L. essential oils in combination to control postharvest pathogenic Aspergilli and autochthonous mycoflora in Vitis labrusca L. (table grapes).

    Science.gov (United States)

    de Sousa, Larissa Lima; de Andrade, Sonálle Carolina Albuquerque; Athayde, Ana Júlia Alves Aguiar; de Oliveira, Carlos Eduardo Vasconcelos; de Sales, Camila Veríssimo; Madruga, Marta Suely; de Souza, Evandro Leite

    2013-08-01

    This study evaluated the efficacy of the application of the essential oils of Origanum vulgare L. (OVEO) and Rosmarinus officinalis L. (ROEO) alone and in combination to inhibit Aspergillus flavus URM 4540 and Aspergillus niger URM 5842 in fungal growth media and on Vitis labrusca L. (table grapes). The influence on the autochthonous mycoflora and the physical, physicochemical and sensory characteristics of the grapes during storage (25°C, 12days and 12°C, 24days) were also studied. The application of the essential oils in different concentrations (Minimum Inhibitory Concentration - MIC, 1/2 MIC+1/2 MIC and 1/4 MIC+1/4 MIC) inhibited the mycelial growth and spore germination of the test fungi and inhibited the growth of the assayed fungal strains in artificially contaminated grapes and the autochthonous mycoflora of grapes stored at both room and cold temperatures. In general, the application of OVEO and/or ROEO at sub-lethal concentrations preserved the quality of grapes as measured by their physical, physicochemical and sensory attributes throughout the assessed storage time. These results demonstrate the potential of the combination of OVEO and ROEO at sub-lethal concentrations to control postharvest pathogenic fungi in fruits, particularly, A. flavus and A. niger in table grapes.

  14. Taxonomic structure of the yeasts and lactic acid bacteria microbiota of pineapple (Ananas comosus L. Merr.) and use of autochthonous starters for minimally processing.

    Science.gov (United States)

    Di Cagno, Raffaella; Cardinali, Gainluigi; Minervini, Giovanna; Antonielli, Livio; Rizzello, Carlo Giuseppe; Ricciuti, Patrizia; Gobbetti, Marco

    2010-05-01

    Pichia guilliermondii was the only identified yeast in pineapple fruits. Lactobacillus plantarum and Lactobacillus rossiae were the main identified species of lactic acid bacteria. Typing of lactic acid bacteria differentiated isolates depending on the layers. L. plantarum 1OR12 and L. rossiae 2MR10 were selected within the lactic acid bacteria isolates based on the kinetics of growth and acidification. Five technological options, including minimal processing, were considered for pineapple: heating at 72 degrees C for 15 s (HP); spontaneous fermentation without (FP) or followed by heating (FHP), and fermentation by selected autochthonous L. plantarum 1OR12 and L. rossiae 2MR10 without (SP) or preceded by heating (HSP). After 30 days of storage at 4 degrees C, HSP and SP had a number of lactic acid bacteria 1000 to 1,000,000 times higher than the other processed pineapples. The number of yeasts was the lowest in HSP and SP. The Community Level Catabolic Profiles of processed pineapples indirectly confirmed the capacity of autochthonous starters to dominate during fermentation. HSP and SP also showed the highest antioxidant activity and firmness, the better preservation of the natural colours and were preferred for odour and overall acceptability.

  15. The effects of fin rot disease and sampling method on blood chemistry and hematocrit measurements of winter flounder, Pseudopleuronectes americanus from New Haven Harbor (1987--1990).

    Science.gov (United States)

    Ziskowski, J; Mercaldo-Allen, R; Pereira, J J; Kuropat, C; Goldberg, R

    2008-04-01

    Winter flounder from New Haven, Connecticut were evaluated for fin rot disease. Blood samples collected from healthy and diseased fish were used to measure bilirubin, calcium, hematocrit, inorganic phosphorus, osmolality, and total protein. Blood measurements were significantly affected by the presence of fin rot disease and by sampling mode (bled immediately or after 18 h). A reduction in blood chemistry values was associated with fin rot disease. Logistic regression modeling was used to identify explanatory variables contributing to the fin rot outcome in winter flounder. Blood constituent levels were higher in fish bled immediately versus 18 h post-capture, especially among fish without fin rot, suggesting that a waiting period is necessary for blood values to stabilize following initial sampling stress. This study presents evidence that winter flounder blood chemistry and hematocrit measurements are affected by fin rot disease.

  16. The delignification effects of white-rot fungal pretreatment on thermal characteristics of moso bamboo.

    Science.gov (United States)

    Zeng, Yelin; Yang, Xuewei; Yu, Hongbo; Zhang, Xiaoyu; Ma, Fuying

    2012-06-01

    Moso bamboo (Phyllostachys pubesescens) is a major bamboo species which is widely used for temporary scaffolding in China. Its fast growing and low ash content make moso bamboo a potential renewable energy resource. In present work, thermal behaviors of moso bamboo and its lignocellulosic fractions were investigated using thermogravimetric analysis. Furthermore, to understand whether the delignification effect of white-rot fungi can promote the thermal decomposition of bamboo especially the lignin component, the changes in lignocellulose components as well as thermal behaviors of bamboo and acid detergent lignin were investigated. The results showed that the white-rot fungal pretreatment is advantageous to thermal decomposition of lignin in bamboo. The weight losses of ADL samples became greater and the thermal processes were accelerated after biopretreatment. The total pyrolysis weight loss increased from 57.14% to 65.07% for Echinodontium taxodii 2538 treated bamboo ADL sample.

  17. Biological decolourisation of pulp mill effluent using white rot fungus Trametes versicolor.

    Science.gov (United States)

    Srinivasan, S V; Murthy, D V S; Swaminathan, T

    2012-07-01

    The conventional biological treatment methods employed in the pulp and paper industries are not effective in reducing the colour and chemical oxygen demand (COD). The white-rot fungi are reported to have the ability to biodegrade the lignin and its derivatives. This paper is focused on the biological treatment of pulp mill effluent from a bagasse-based pulp and paper industry using fungal treatment. Experiments were conducted using the white rot fungus, Trametes versicolor in shake flasks operated in batch mode with different carbon sources. The decolourisation efficiencies of 82.5% and 80.3% were obtained in the presence of 15 g/L and 5 g/L of glucose and sucrose concentrations respectively with a considerable COD reduction. The possibility of reusing the grown fungus was examined for repeated treatment studies.

  18. Synergistic Effects of Nanochitin on Inhibition of Tobacco Root Rot Disease.

    Science.gov (United States)

    Zhou, Yang; Jiang, Shijun; Jiao, Yongji; Wang, Hezhong

    2017-02-22

    Nanomaterials have great potential for use in various fields, due to their unique properties. In order to explore the bioactivity of nanochitin on tobacco, the effects of nanochitin suspensions on tobacco seed germination, seedling growth, and synergistic effects with fungicides were studied in indoor and field trials. Results showed that 0.004% (w/v) of nanochitin improved tobacco seed germination and shortened mean time to germination significantly; 0.005% (w/v) of nanochitin increased tobacco stem length, stem girth, leaf number and leaf area, and 0.001% (w/v) of nanochitin had synergistic effects on inhibition of tobacco root rot when mixed with metalaxyl mancozeb and thiophanate methyl fungicides. This indicates that nanochitin suspensions have a strong potential to protect tobacco from tobacco root rot diseases and reduce the use of chemical fungicides in tobacco plantations.

  19. Temporal changes in wood crystalline cellulose during degradation by brown rot fungi

    DEFF Research Database (Denmark)

    Howell, Caitlin; Hastrup, Anne Christine Steenkjær; Goodell, Barry;

    2009-01-01

    The degradation of wood by brown rot fungi has been studied intensely for many years in order to facilitate the preservation of in-service wood. In this work we used X-ray diffraction to examine changes in wood cellulose crystallinity caused by the brown rot fungi Gloeophyllum trabeum, Coniophora...... planes in all degraded samples after roughly 20% weight loss, as well as a decrease in the average observed relative peak width at 2¿ = 22.2°. These results may indicate a disruption of the outer most semi-crystalline cellulose chains comprising the wood microfibril. X-ray diffraction analysis of wood...... subjected to biological attack by fungi may provide insight into degradative processes and wood cellulose structure....

  20. The GSTome Reflects the Chemical Environment of White-Rot Fungi.

    Directory of Open Access Journals (Sweden)

    Aurélie Deroy

    Full Text Available White-rot fungi possess the unique ability to degrade and mineralize all the different components of wood. In other respects, wood durability, among other factors, is due to the presence of extractives that are potential antimicrobial molecules. To cope with these molecules, wood decay fungi have developed a complex detoxification network including glutathione transferases (GST. The interactions between GSTs from two white-rot fungi, Trametes versicolor and Phanerochaete chrysosporium, and an environmental library of wood extracts have been studied. The results demonstrate that the specificity of these interactions is closely related to the chemical composition of the extracts in accordance with the tree species and their localization inside the wood (sapwood vs heartwood vs knotwood. These data suggest that the fungal GSTome could reflect the chemical environment encountered by these fungi during wood degradation and could be a way to study their adaptation to their way of life.

  1. Gibberella stalk rot (Fusarium graminearum) resistance of maize inbreds and their F1 hybrids and their potential for use in resistance breeding programs

    OpenAIRE

    Santiago Carabelos, Rogelio; Reid, Lana M.; Zhu, X.(Central China Normal University, Wuhan, China); Butrón Gómez, Ana María; Malvar Pintos, Rosa Ana

    2010-01-01

    Fusarium graminearum Schwabe is one of the predominant fungal species responsible for stalk rot of maize in Canada and many other countries. Adapted sources of resistance to this disease are scarce but recently a few have been identified. To evaluate the usefulness of these sources in a breeding programme to improve stalk rot resistance, a complete diallel cross of five inbreds of varying susceptibility to stalk rot was conducted. Artificial inoculations of stalks were accomplished by injecti...

  2. Identification and Pathogenicity of Phytopathogenic Bacteria Associated with Soft Rot Disease of Girasole Tuber

    OpenAIRE

    Mamdoh Ewis ISMAIL; Abdel-Monaim, Montaser Fawzy; Yasser Mahmoud MOSTAFA

    2012-01-01

    During 2010-2011 growing seasons six bacterial isolates were separated from naturally infected girasole plants tubers (Helianthus tuberosus L.) cv. �Balady�, showing soft rot, collected from experimental Farm of the Faculty of Agriculture, in El-Minia University, Egypt. Pathogenicity tests showed various virulence for the bacteria isolated from girasole tubers, found pathogenic. These organisms were characterized as rod-shaped, Gram negative, ?-methyl-d-glucoside medium, reducing substances f...

  3. Pectic Enzyme Activities of Bacteria Associated with Rotted Onions (Allium cepa)

    OpenAIRE

    Obi, Samuel K. C.; Umezurike, Gabriel M.

    1981-01-01

    The aerobic bacteria associated with soft rot in onions (Allium cepa) were isolated and identified as a Vibrio sp., Micrococcus epidermidis, Pseudomonas cepacia, an Acinetobacter sp., a Xanthomonas sp., Bacillus polymyxa, and Bacillus megaterium. With the cup-plate assay method, no pectin hydrolase could be detected from any of these isolates when they were cultured in pectin medium, but lyase and pectinesterases were detectable. Onion tissue cultures showed pectin hydrolase activity for P. c...

  4. Chemical Characterization of Different Sumac and Pomegranate Extracts Effective against Botrytis cinerea Rots

    OpenAIRE

    Romeo, Flora V.; Gabriele Ballistreri; Simona Fabroni; Sonia Pangallo; Maria Giulia Li Destri Nicosia; Leonardo Schena; Paolo Rapisarda

    2015-01-01

    Pomegranate (Punica granatum L.) peel and sumac (Rhus coriaria L.) fruit and leaf extracts were chemically characterized and their ability to inhibit table grape (cv. Italia) rots caused by Botrytis cinerea was evaluated on artificially inoculated berries. Different extraction methods were applied and extracts were characterized through Ultra Fast High Performance Liquid Chromatography coupled to Photodiode array detector and Electrospray ionization Mass spectrometer (UPLC-PDA-ESI/MSn) for th...

  5. Biocontrol Characteristics of Bacillus Species in Suppressing Stem Rot of Grafted Cactus Caused by Bipolaris cactivora.

    Science.gov (United States)

    Bae, Sooil; Kim, Sang Gyu; Kim, Young Ho

    2013-03-01

    One of the most important limiting factors for the production of the grafted cactus in Korea is the qualitative and quantitative yield loss derived from stem rots especially caused by Bipolaris cactivora. This study is aimed to develop microbial control agents useful for the control of the bipolaris stem rot. Two bacteria (GA1-23 and GA4-4) selected out of 943 microbial isolates because of their strong antibiotic activity against B. cactivora were identified as Bacillus subtilis and B. amyloliquefaciens, respectively, by the cultural characteristics, Biolog program and 16S rRNA sequencing analyses. Both bacterial isolates significantly inhibited the conidial germination and mycelial growth of the pathogen with no significant difference between the two, of which the inhibitory efficacies varied depending on the cultural conditions such as temperature, nutritional compositions and concentrations. Light and electron microscopy of the pathogen treated with the bacterial isolates showed the inhibition of spore germination with initial malformation of germ tubes and later formation of circle-like vesicles with no hyphal growth and hyphal disruption sometimes accompanied by hyphal swellings and shrinkages adjacent to the bacteria, suggesting their antibiotic mode of antagonistic activity. Control efficacy of B. subtilis GA1-23 and B. amyloliquefaciens GA4-4 on the cactus stem rot were not as high as but comparable to that of fungicide difenoconazole when they were treated simultaneously at the time of pathogen inoculation. All of these results suggest the two bacterial isolates have a good potential to be developed as biocontrol agents for the bipolaris stem rot of the grafted cactus.

  6. Biocontrol Characteristics of Bacillus Species in Suppressing Stem Rot of Grafted Cactus Caused by Bipolaris cactivora

    Directory of Open Access Journals (Sweden)

    Sooil Bae

    2013-03-01

    Full Text Available One of the most important limiting factors for the production of the grafted cactus in Korea is the qualitative and quantitative yield loss derived from stem rots especially caused by Bipolaris cactivora. This study is aimed to develop microbial control agents useful for the control of the bipolaris stem rot. Two bacteria (GA1-23 and GA4-4 selected out of 943 microbial isolates because of their strong antibiotic activity against B. cactivora were identified as Bacillus subtilis and B. amyloliquefaciens, respectively, by the cultural characteristics, Biolog program and 16S rRNA sequencing analyses. Both bacterial isolates significantly inhibited the conidial germination and mycelial growth of the pathogen with no significant difference between the two, of which the inhibitory efficacies varied depending on the cultural conditions such as temperature, nutritional compositions and concentrations. Light and electron microscopy of the pathogen treated with the bacterial isolates showed the inhibition of spore germination with initial malformation of germ tubes and later formation of circle-like vesicles with no hyphal growth and hyphal disruption sometimes accompanied by hyphal swellings and shrinkages adjacent to the bacteria, suggesting their antibiotic mode of antagonistic activity. Control efficacy of B. subtilis GA1-23 and B. amyloliquefaciens GA4-4 on the cactus stem rot were not as high as but comparable to that of fungicide difenoconazole when they were treated simultaneously at the time of pathogen inoculation. All of these results suggest the two bacterial isolates have a good potential to be developed as biocontrol agents for the bipolaris stem rot of the grafted cactus.

  7. Biocontrol Characteristics of Bacillus Species in Suppressing Stem Rot of Grafted Cactus Caused by Bipolaris cactivora

    Science.gov (United States)

    Bae, Sooil; Kim, Sang Gyu; Kim, Young Ho

    2013-01-01

    One of the most important limiting factors for the production of the grafted cactus in Korea is the qualitative and quantitative yield loss derived from stem rots especially caused by Bipolaris cactivora. This study is aimed to develop microbial control agents useful for the control of the bipolaris stem rot. Two bacteria (GA1-23 and GA4-4) selected out of 943 microbial isolates because of their strong antibiotic activity against B. cactivora were identified as Bacillus subtilis and B. amyloliquefaciens, respectively, by the cultural characteristics, Biolog program and 16S rRNA sequencing analyses. Both bacterial isolates significantly inhibited the conidial germination and mycelial growth of the pathogen with no significant difference between the two, of which the inhibitory efficacies varied depending on the cultural conditions such as temperature, nutritional compositions and concentrations. Light and electron microscopy of the pathogen treated with the bacterial isolates showed the inhibition of spore germination with initial malformation of germ tubes and later formation of circle-like vesicles with no hyphal growth and hyphal disruption sometimes accompanied by hyphal swellings and shrinkages adjacent to the bacteria, suggesting their antibiotic mode of antagonistic activity. Control efficacy of B. subtilis GA1-23 and B. amyloliquefaciens GA4-4 on the cactus stem rot were not as high as but comparable to that of fungicide difenoconazole when they were treated simultaneously at the time of pathogen inoculation. All of these results suggest the two bacterial isolates have a good potential to be developed as biocontrol agents for the bipolaris stem rot of the grafted cactus. PMID:25288927

  8. Biological pretreatment of softwood Pinus densiflora by three white rot fungi.

    Science.gov (United States)

    Lee, Jae-Won; Gwak, Ki-Seob; Park, Jun-Yeong; Park, Mi-Jin; Choi, Don-Ha; Kwon, Mi; Choi, In-Gyu

    2007-12-01

    The effects of biological pretreatment on the Japanese red pine Pinus densiflora, was evaluated after exposure to three white rot fungi Ceriporia lacerata, Stereum hirsutum, and Polyporus brumalis. Change in chemical composition, structural modification, and their susceptibility to enzymatic saccharification in the degraded wood were analyzed. Of the three white rot fungi tested, S. hirsutum selectively degraded the lignin of this sortwood rather than the holocellulose component. After eight weeks of pretreatment with S. hirsutum, total weight loss was 10.7%, while lignin loss was the highest at 14.52% among the tested samples. However, holocellulose loss was lower at 7.81% compared to those of C. lacerata and P. brumalis. Extracelluar enzymes from S. hirsutum showed higher activity of ligninase and lower activity of cellulase than those from other white rot fungi. Thus, total weight loss and changes in chemical composition of the Japanese red pine was well correlated with the enzyme activities related with lignin- and cellulose degradation in these fungi. Based on the data obtained from analysis of physical characterization of degraded wood by X-ray Diffractometry (XRD) and pore size distribution, S. hirsutum was considered as an effective potential fungus for biological pretreatment. In particular, the increase of available pore size of over 120 nm in pretreated wood powder with S. hirsutum made enzymes accessible for further enzymatic saccharification. When Japanese red pine chips treated with S. hirsutum were enzymatically saccharified using commercial enzymes (Cellulclast 1.5 L and Novozyme 188), sugar yield was greatly increased (21.01%) compared to non-pretreated control samples, indicating that white rot fungus S. hirsutum provides an effective process in increasing sugar yield from woody biomass.

  9. New polyhydroxylated metabolite derived from biotransformation of diosgenin by the white-rot fungus Coriolus versicolor

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    Microbial transformation of diosgenin(1) was carried out with the white-rot fungus,Coriolus versicolor.A new polyhydroxyl metabolite,(25R)-spirost-5-ene-3β,7β,21-triol(2),was obtained as a result of hydroxylation.Its structure was elucidated on the basis of 1D and 2D NMR as well as HR-ESI-MS spectroscopic analysis.

  10. The Use of Antioxidants to Control Root Rot and Wilt Diseases of Pepper

    Directory of Open Access Journals (Sweden)

    Montaser Fawzy ABDEL-MONAIM

    2010-06-01

    Full Text Available Ten isolates of Fusarium spp were isolated from pepper plants collected from different locations in New Valley Governorate, Egypt. Fusarium solani isolate FP2 and F. oxysporum isolate FP4 were highly pathogenic isolates but the other isolates moderate or less pathogenic to pepper plants (cv. Anaheim-M. The four antioxidant compounds (coumaric acid, citric acid, propylgalate and salicylic acid each at 100 and 200 ppm were evaluated for their in vitro and in vivo agonist to Fusarium pathogenic isolates caused root rot and wilt diseases in pepper plants. All tested antioxidant compounds reduced damping-off, root rot/wilt and area under root rot/wilt progress curve when used as seed soaking, seedling soaking, and soil drench especially at 200 ppm under greenhouse and field conditions compared with untreated plants. All chemicals increased fresh and dry weight of seedling grown in soil drenching or seed treatment with any antioxidants. At the same time, all tested chemicals significantly increase plant growth parameters i.e plant length, plant branching, and total yield per plant in case of seedling soaking or soil drench. In general, propylgalate at 200 ppm was more efficient in reducing infection with damping-off, root rot and wilt diseases as well as increasing the seedling fresh weight, dry weight, plant length, plant branching, number of pod plant-1 and pod yield plant-1. On the other hand, all tested antioxidants had less or no effect on mycelial dry weight and mycelial leaner growth. On the contrary, all chemicals much reduced spore formation in both Fusarium species at 100 or 200 ppm and the inhibitory effect of antioxidants increased with increasing their concentrations.

  11. Relationship between potassium chloride suppression of corn stalk rot and soil microorganism characteristics

    Institute of Scientific and Technical Information of China (English)

    LIU Xiaoyan; JIN Jiyun; HE Ping; LIU Hailong; LI Wenjuan

    2007-01-01

    Observations from a site-fixed field trial of 12 years in Jilin Province show that potassium chloride (KC1)application has a significant positive influence on corn stalk rot incidence.Incubation experiments were conducted to study the effects of KC1 and soil extracts on the growth of Fusarium graminearum,the most common stalk rot fungi in this area,and the population changes in rhizosphere fungi,bacteria and actinomyces at different growth stages of corn.The results show that KC1 addition to the potato dextrose agar (PDA) medium could not directly suppress Fusarium graminearum development.Soil extracts from soil samples taken from the field plots with and without KC1 application affected Fusarium graminearum development,with soil extracts with KC1 treatments suppressing Fusarium graminearum development more significantly,compared with that from the KC1-free treatment.These results indicate that soil extracts play a role in the interaction between corn and Fusarium graminearum.Long-term KC1 application may increase the populations of rhizosphere fungi and actinomyces in the early growth stages,while there is no significant difference in the number of bacteria in rhizosphere among the treatments.Also,the populations of rhizosphere fungi are negatively correlated with the incidence of stalk rot in the early growth stages of corn.The sensitive infection stages of pathogen to corn consist of the stages when there is significant difference in the populations of rhizosphere fungi and actinomyces.The change of microorganism populations (especially fungi) in soil may be associated with the incidence decrease and is one of the mechanisms of KC1 suppressing corn stalk rot.

  12. Degradation of Phenanthrene by a chilean white rot fungus Anthracophyllum discolor

    Energy Technology Data Exchange (ETDEWEB)

    Acevedo, F.; Cuevas, R.; Rubilar, O.; Tortella, G.; Diez, M. C.

    2009-07-01

    Anthracophyllum discolor, a white rot fungus of southern Chile, has been an efficient degrader of clorophenols and azo dyes. This fungus produces ligninolytic enzymes being manganese peroxidase (Mn) the major one produced. The main purpose of this study was to evaluate the effect of phenanthrene concentration of ligninolytic activity of A. Discolor measured by poly R-478 decolorazation, and to evaluate the potential of this fungus for degrading phenanthrene in liquid media. (Author)

  13. Lignin as a facilitator, not a barrier, during saccharification by brown rot fungi

    Energy Technology Data Exchange (ETDEWEB)

    Schilling, Jonathan S. [Univ. of Minnesota, Minneapolis, MN (United States); Tschirner, Ulrike [Univ. of Minnesota, Minneapolis, MN (United States); Blanchette, Robert A [Univ. of Minnesota, Minneapolis, MN (United States); Filley, Timothy [Purdue Univ., West Lafayette, IN (United States)

    2012-11-28

    This research focused on the biology of a group of wood-degrading fungi that cause brown rot in wood, with particular attention to the potential to mimic this biological approach ex situ for bioprocessing lignocellulosic biomass. Supported by the long-standing theory that these fungi use a two-step oxidative/enzymatic approach during brown rot, our team’s objectives were as follows: 1) to determine the discrete timing of lignin modifications, 2) to correlate these alterations with biocatalyst efficiency and ingress into plant cell walls, and 3) to reproduce modifications prior to saccharification for efficient bioprocessing. The core findings of our research were that 1) lignin modifications occur nearly coincident with enzyme secretion during brown rot and 2) there is no specificity to the benefit that a brown rot pretreatment has on the efficacy of cellulases – it is a general enhancement best predicted by chemical changes to lignin and side-chain hemicellulose sugars. In our work, this meant we could attain and predict broad improvements in saccharification using commercial cellulase cocktails, in some cases more than three-fold of that in untreated biomass. This project was completed with minimal variance from the original project management plan (PMP), resulting in fourteen presentations and posters, four peer-reviewed publications, and one additional publication now in review. The publications have been valuable to other scientists working toward similar goals and have been cited in thirteen peer-reviewed publications written by others since 2010. We are working with ADM to advance application options for industry, building on the lessons learned during this DOE award period.

  14. Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungus Postia placenta.

    Science.gov (United States)

    Zhang, Jiwei; Presley, Gerald N; Hammel, Kenneth E; Ryu, Jae-San; Menke, Jon R; Figueroa, Melania; Hu, Dehong; Orr, Galya; Schilling, Jonathan S

    2016-09-27

    Wood-degrading brown rot fungi are essential recyclers of plant biomass in forest ecosystems. Their efficient cellulolytic systems, which have potential biotechnological applications, apparently depend on a combination of two mechanisms: lignocellulose oxidation (LOX) by reactive oxygen species (ROS) and polysaccharide hydrolysis by a limited set of glycoside hydrolases (GHs). Given that ROS are strongly oxidizing and nonselective, these two steps are likely segregated. A common hypothesis has been that brown rot fungi use a concentration gradient of chelated metal ions to confine ROS generation inside wood cell walls before enzymes can infiltrate. We examined an alternative: that LOX components involved in ROS production are differentially expressed by brown rot fungi ahead of GH components. We used spatial mapping to resolve a temporal sequence in Postia placenta, sectioning thin wood wafers colonized directionally. Among sections, we measured gene expression by whole-transcriptome shotgun sequencing (RNA-seq) and assayed relevant enzyme activities. We found a marked pattern of LOX up-regulation in a narrow (5-mm, 48-h) zone at the hyphal front, which included many genes likely involved in ROS generation. Up-regulation of GH5 endoglucanases and many other GHs clearly occurred later, behind the hyphal front, with the notable exceptions of two likely expansins and a GH28 pectinase. Our results support a staggered mechanism for brown rot that is controlled by differential expression rather than microenvironmental gradients. This mechanism likely results in an oxidative pretreatment of lignocellulose, possibly facilitated by expansin- and pectinase-assisted cell wall swelling, before cellulases and hemicellulases are deployed for polysaccharide depolymerization.

  15. Pectic Enzyme Activities of Bacteria Associated with Rotted Onions (Allium cepa).

    Science.gov (United States)

    Obi, S K; Umezurike, G M

    1981-10-01

    The aerobic bacteria associated with soft rot in onions (Allium cepa) were isolated and identified as a Vibrio sp., Micrococcus epidermidis, Pseudomonas cepacia, an Acinetobacter sp., a Xanthomonas sp., Bacillus polymyxa, and Bacillus megaterium. With the cup-plate assay method, no pectin hydrolase could be detected from any of these isolates when they were cultured in pectin medium, but lyase and pectinesterases were detectable. Onion tissue cultures showed pectin hydrolase activity for P. cepacia and B. polymyxa and lyase and pectinesterase activities for all of the isolates, usually at higher levels of activity than those of the pectin medium culture filtrates. In both culture media, Vibrio sp. showed the highest lyase and pectinesterase activities. In the viscometric test, all of the isolates achieved at least a 50% decrease in viscosity for lyase enzyme, with M. epidermidis and Vibrio sp. recording viscosity decreases as high as 83%. The ability to cause soft rot in onion bulbs was demonstrated by P. cepacia and Xanthomonas sp. Benzoic acid at a concentration of 0.8 mg/ml caused total suppression of enzyme production, whereas sodium benzoate at this concentration reduced pectinesterase production by 71% and lyase production by 72%. The possible use of these preservatives in the control of soft rot in onions is noted.

  16. Isolation and identification of Sclerotinia stem rot causal pathogen in Arabidopsis thaliana

    Institute of Scientific and Technical Information of China (English)

    Ai-rong WANG; Wen-wei LIN; Xiao-ting CHEN; Guo-dong LU; Lie ZHOU; Zong-hua WANG

    2008-01-01

    A new stem rot disease is found to occur naturally on Arabidopsis plants in greenhouses of Fuzhou, China. In order to identify its pathogen, we conducted a series of fimgal isolation and purification, plant reinoculation, and ascus and ascospore induction from the sclerotia. The isolate caused typical water-soaked lesions after reinoeulation and produced sclerotia both on Arabidopsis plants and culture medium plates, and the sclerotia could be induced to produce discal apothecia and 8 binucleate ascospores per ascus. These disease symptom and fungal morphology data revealed that the fungus Sclerotinia sclerotiorum (Lib.) de Bary was the pathogen for Arabidopsis stem rot. To confirm this, we further amplified its large subunit ribosomal DNA (LSU rDNA) by polymerase chain reaction (PCR), and compared the sequence with the known LSU rDNA sequences in GenBank. The results show that the sequence shares the highest identities with the LSU rDNAs of different S. sclerotiorum strains. Taking all these data together, we concluded that the fungus that caused the Arabidopsis stem rot is S. sclerotiorum (Lib.) de Bary. This is the first report that Arabidopsis is naturally infected by S. sclerotiorum.

  17. Bud Rot Caused by Phytophthora palmivora: A Destructive Emerging Disease of Oil Palm.

    Science.gov (United States)

    Torres, G A; Sarria, G A; Martinez, G; Varon, F; Drenth, A; Guest, D I

    2016-04-01

    Oomycetes from the genus Phytophthora are among the most important plant pathogens in agriculture. Epidemics caused by P. infestans precipitated the great Irish famine and had a major impact on society and human history. In the tropics, P. palmivora is a pathogen of many plant species including cacao (Theobroma cacao), citrus (Citrus sp.), durian (Durio zibethines), jackfruit (Artrocarpus heterophyllus), rubber (Hevea brasiliensis), and several palm species including coconut (Cocos nucifera), and the African oil palm (Elaeis guineensis) as determined recently. The first localized epidemics of bud rot in oil palm in Colombia were reported in 1964. However, recent epidemics of bud rot have destroyed more than 70,000 ha of oil palm in the Western and Central oil palm growing regions of Colombia. The agricultural, social, and economic implications of these outbreaks have been significant in Colombia. Identification of the pathogen after 100 years of investigating the disease in the world enabled further understanding of infection, expression of a range of symptoms, and epidemiology of the disease. This review examines the identification of P. palmivora as the cause of bud rot in Colombia, its epidemiology, and discusses the importance of P. palmivora as a major threat to oil palm plantings globally.

  18. Control of Root Rot and Wilt Diseases of Roselle under Field Conditions.

    Science.gov (United States)

    Hassan, Naglaa; Elsharkawy, Mohsen Mohamed; Shimizu, Masafumi; Hyakumachi, Mitsuro

    2014-12-01

    Roselle (Hibiscus sabdariffa L.) is one of the most important medicinal crops in many parts of the world. In this study, the effects of microelements, antioxidants, and bioagents on Fusarium oxysporum, F. solani, and Macrophomina phaseolina, the causal pathogens of root rot and wilt diseases in roselle, were examined under field conditions. Preliminary studies were carried out in vitro in order to select the most effective members to be used in field control trials. Our results showed that microelements (copper and manganese), antioxidants (salicylic acid, ascorbic acid, and EDTA), a fungicide (Dithane M45) and biological control agents (Trichoderma harzianum and Bacillus subtilis) were significantly reduced the linear growth of the causal pathogens. Additionally, application of the previous microelements, antioxidants, a fungicide and biological control agents significantly reduced disease incidence of root rot and wilt diseases under field conditions. Copper, salicylic acid, and T. harzianum showed the best results in this respect. In conclusion, microelements, antioxidants, and biocontrol agents could be used as alternative strategies to fungicides for controlling root rot and wilt diseases in roselle.

  19. Control of postharvest Botrytis fruit rot of strawberry by volatile organic compounds of Candida intermedia.

    Science.gov (United States)

    Huang, R; Li, G Q; Zhang, J; Yang, L; Che, H J; Jiang, D H; Huang, H C

    2011-07-01

    A study was conducted to identify volatile organic compounds or volatiles produced by Candida intermedia strain C410 using gas chromatography-mass spectrometry, and to determine efficacy of the volatiles of C. intermedia in suppression of conidial germination and mycelial growth of Botrytis cinerea and control of Botrytis fruit rot of strawberry. Results showed that, among 49 volatiles (esters, alcohols, alkenes, alkanes, alkynes, organic acids, ketones, and aldehydes) identified from C. intermedia cultures on yeast extract peptone dextrose agar, two compounds, 1,3,5,7-cyclooctatetraene and 3-methyl-1-butanol, were the most abundant. Synthetic chemicals of 1,3,5,7-cyclooctatetraene; 3-methyl-1-butanol; 2-nonanone; pentanoic acid, 4-methyl-, ethyl ester; 3-methyl-1-butanol, acetate; acetic acid, pentyl ester; and hexanoic acid, ethyl ester were highly inhibitory to conidial germination and mycelial growth of B. cinerea. Inhibition of conidial germination and mycelial growth of B. cinerea by volatiles of C. intermedia was also observed. Meanwhile, results showed that incidence and severity of Botrytis fruit rot of strawberry was significantly (P fruit to the volatiles from C. intermedia cultures or C. intermedia-infested strawberry fruit. These results suggest that the volatiles of C. intermedia C410 are promising biofumigants for control of Botrytis fruit rot of strawberry.

  20. Identification of sources of resistance to anthracnose stalk rot in maize

    Directory of Open Access Journals (Sweden)

    Alessandro Nicoli

    Full Text Available ABSTRACT: Adoption of resistant cultivars is the primary measure used to control anthracnose stalk rot. The goal of this study was to identify maize-resistant genotypes to anthracnose stalk rot, which are similar to the hybrid 2B710. Experiments were performed at Embrapa Maize and Sorghum experimental fields in Brazil. The first experimental trial evaluated 234 maize lines as well as two commercials hybrids, BRS1010 (susceptible and 2B710 (resistant. Artificial inoculations were performed with a strain at the blister (R2 phase, and evaluation of disease severity was performed after 30 days. The second experimental trial evaluated 48 maize lines and hybrids, inoculated with two Colletotrichum graminicola strains. In the first trial, eight resistance groups were formed, and the last lines were more resistant, as was the hybrid 2B710, with values between 11.50% and 23.0% of severity. In the second trial, there was an interaction between the two factors, lines and isolates, and the lines often showed the same reaction features as those obtained in the first trial. However, the disease severity was higher for most lines, even when using other isolates. These lines with effective levels of resistance could be used in future studies of inheritance, in programs to develop hybrids, and to identify molecular markers associated with resistance to anthracnose stalk rot in maize.

  1. Lettuce genotype resistance to "soft rot" caused by Pectobacterium carotovorum subsp. carotovorum

    Directory of Open Access Journals (Sweden)

    Kátia Cilene da Silva Felix

    2014-08-01

    Full Text Available Soft rot, caused by Pectobacterium carotovorum subsp. carotovorum (Pcc, is the main bacterial disease affecting lettuce (Lactuca sativa L. crops in Brazil and leads to significant yield losses. This study aimed to assess the reaction of lettuce genotypes to soft rot induced by a virulent isolate and the stability of the resistance to three isolates varying in virulence. Using a descriptive ordinal scale ranging from 1 to 9 a classification system was defined: class 1 = resistant (R: severity (Sev 3.5. Of the 41 tested genotypes, 14 were classified as MR and 27 as S when inoculated with a Pcc isolate of intermediate virulence. Eleven of these genotypes (four S and seven MR were selected to test their resistance stability against three other isolates with an increasing degree of virulence (Pcc36 < Pcc-A1.1 < Pcc-23. Out of the 11 genotypes eight retained the original classification and three moved from S to MR resistant class when challenged with the least virulent isolate. Vitória de Santo Antão was the only genotype classified as MR for all tested isolates and is a promising candidate for durable soft rot resistance breeding.

  2. Fourier Transform Infrared Radiation Spectroscopy Applied for Wood Rot Decay and Mould Fungi Growth Detection

    Directory of Open Access Journals (Sweden)

    Bjørn Petter Jelle

    2012-01-01

    Full Text Available Material characterization may be carried out by the attenuated total reflectance (ATR Fourier transform infrared (FTIR radiation spectroscopical technique, which represents a powerful experimental tool. The ATR technique may be applied on both solid state materials, liquids, and gases with none or only minor sample preparations, also including materials which are nontransparent to IR radiation. This facilitation is made possible by pressing the sample directly onto various crystals, for example, diamond, with high refractive indices, in a special reflectance setup. Thus ATR saves time and enables the study of materials in a pristine condition, that is, the comprehensive sample preparation by pressing thin KBr pellets in traditional FTIR transmittance spectroscopy is hence avoided. Materials and their ageing processes, both ageing by natural and accelerated climate exposure, decomposition and formation of chemical bonds and products, may be studied in an ATR-FTIR analysis. In this work, the ATR-FTIR technique is utilized to detect wood rot decay and mould fungi growth on various building material substrates. An experimental challenge and aim is to be able to detect the wood rot decay and mould fungi growth at early stages when it is barely visible to the naked eye. Another goal is to be able to distinguish between various species of fungi and wood rot.

  3. Enzymatic saccharification of biologically pretreated Pinus densiflora using enzymes from brown rot fungi.

    Science.gov (United States)

    Lee, Jae-Won; Kim, Ho-Yong; Koo, Bon-Wook; Choi, Don-Ha; Kwon, Mi; Choi, In-Gyu

    2008-08-01

    Enzymatic saccharification of lignocellulosic biomass was performed using culture filtrates of brown rot fungi including Gloeophyllum sepiarium, Fomitopsis pinicola, and Laetiporus sulphureus. Biological treatment with white rot fungi was used as pretreatment prior to enzymatic saccharification. Endoglucanase, beta-glucosidase, xylanase and cellobiohydrolase activities were determined from concentrated culture filtrates of the brown rot fungi. L. sulphureus has the highest endoglucanase, beta-glucosidase, and xylanase activities, and F. pinicola has the highest cellobiohydrolase activity. When enzymes from L. sulphureus were used along with the lignocellulosic biomass pretreated with Stereum hirsutum as the carbon source, the total sugar yield was 11.36 mg/0.25 g of dry weight biomass, with the highest activities of cellulase and hemicellulase. In order to increase the sugar yield, the enzymes from L. sulphureus were mixed with those from F. pinicola, which showed high cellobiohydrolase activity. This caused an increase in the sugar yield from 11.36 mg to 15.22 mg. When temperature was increased to 50 degrees C, the total sugar yield increased to 17.74 mg for the same reaction time. The crystallinity of lignocellulosic biomass decreased from 68.4% to 60.2%, when lignocellulosic biomass pretreated with S. hirsutum was hydrolyzed using enzymes from L. sulphureus.

  4. Isolation, Characterization, and Identification of Biological Control Agent for Potato Soft Rot in Bangladesh

    Directory of Open Access Journals (Sweden)

    M. M. Rahman

    2012-01-01

    Full Text Available A total of 91 isolates of probable antagonistic bacteria of potato soft rot bacterium Erwinia carotovora subsp. carotovora (Ecc were extracted from rhizospheres and endophytes of various crop plants, different soil varieties, and atmospheres in the potato farming areas of Bangladesh. Antibacterial activity of the isolated probable antagonistic bacteria was tested in vitro against the previously identified most common and most virulent soft rot causing bacterial strain Ecc P-138. Only two isolates E-45 and E-65 significantly inhibited the in vitro growth of Ecc P-138. Physiological, biochemical, and carbon source utilization tests identified isolate E-65 as a member of the genus Bacillus and the isolate E-45 as Lactobacillus sp. The stronger antagonistic activity against Ecc P-138 was found in E-65 in vitro screening and storage potatoes. E-65 reduced the soft rot infection to 22-week storage potatoes of different varieties by 32.5–62.5% in model experiment, demonstrating its strong potential to be used as an effective biological control agent for the major pectolytic bacteria Ecc. The highest (62.5% antagonistic effect of E-65 was observed in the Granola and the lowest (32.7% of that was found in the Cardinal varieties of the Bangladeshi potatoes. The findings suggest that isolate E-65 could be exploited as a biocontrol agent for potato tubers.

  5. The potato dry rot causal agent and severity in Ardabil storages and the resistance of cultivars to the disease

    Directory of Open Access Journals (Sweden)

    Leila Khoshnevis

    2016-09-01

    Full Text Available Introduction: Dry rot is one of the most important diseases of potato in storages. The aim of this study was to determine dry rot severity in potato storages of Ardabil, identify the disease causal agents and evaluate some potato cultivars resistance to the disease. Materials and methods: Totally 150 infected samples were collected from thirty nine studied storages in Ardabil. Dry rot severity and the prevalence of infected tubers were determined by surveying three 50 kg bags of potato in the storages. Fungi isolated and purified from the tubers with dry rot symptoms. A factorial design with four replications was applied in order to evaluate the reaction of five potato cultivars to four Fusarium species and determining the resistant one to dry rot. Potato tuber slices were inoculated by conidial suspension of Fusarium species. Four days after inoculation and maintaining in darkness and 25oC, the cultivars susceptibility was  identified. Results: Four species of Fusarium were identified as dry rot causal agents in Ardabil as follows: F. oxysporum, F. poae, F. solani and F. sporotrichioides. There was no significant difference between Fusarium species in pathogenicity. The reaction of cultivars to various Fusarium species was different. Boren had the lowest infection (12.5% and Sabalan showed the highest (98.87 %. Sabalan ،Khavaran ،Agria and hybrid line 3970093 displayed the highest susceptibility to various studied Fusarium species. Discussion and conclusion: Based on the results, Boren is introduced as the most resistant cultivar to Fusarium dry rot and Sabalan, Agria and hybrid line 3970093 as the susceptible ones.

  6. Outbreak of autochthonous canine visceral leishmaniasis in Santa Catarina, Brazil Surto autóctone de leishmaniose visceral canina no Estado de Santa Catarina

    Directory of Open Access Journals (Sweden)

    Mário Steindel

    2013-04-01

    Full Text Available The present study reports the first outbreak of autochthonous canine visceral leishmaniasis in Florianópolis, Santa Catarina, southern Brazil. Following the report of two cases of CVL, the Control Center of Zoonotic Diseases conducted a serological survey by ELISA and IFAT assays in seven districts of the Santa Catarina Island. Eleven seropositive dogs of autochthonous transmission were used in the present study. Infection by Leishmania sp. was confirmed by parasitological examination of bone marrow, liver, spleen and lymph nodes, culture in Schneider's medium and PCR. Leishmania sp. isolates were characterized by PCR-RFLP and hybridization with specific probes, allowing for the identification of Leishmania infantum. Autochthonous transmission of this disease in an area with high tourist traffic presents a major public health concern and signifies the emergence of an important zoonosis in southern Brazil. Therefore, the implementation of surveillance and control measures is imperative to prevent the spread of the disease among the canine population as well as transmission to the human population.O presente estudo relata o primeiro surto autóctone de leishmaniose visceral canina (LCV em Florianópolis, Santa Catarina, Brasil. Durante levantamento soro-epidemiológico realizado pelo Centro de Controle de Doenças Zoonóticas (CCZ envolvendo 2.124 cães, 29 (1,37% foram soropositivos para VL (ELISA + RIFI. Onze cães positivos por transmissão autóctone foram utilizados no presente estudo. A confirmação da infecção por Leishmania sp. foi realizada pelo exame parasitológico da medula óssea, fígado, baço e linfonodos, cultura em meio Schneider e PCR. Os isolados de Leishmania sp. foram caracterizados por PCR-RFLP e hibridação com sondas específicas, permitindo a identificação de Leishmania infantum. A transmissão autóctone da LCV em uma área com grande fluxo turístico como Florianópolis representa um preocupante risco à saúde p

  7. Maize Stalk Rot and Ear Rot in China%中国玉米茎基腐病和穗腐病研究进展

    Institute of Scientific and Technical Information of China (English)

    徐书法; 陈捷; 高增贵; 邹庆道; 纪明山; 刘海南

    2006-01-01

    This review provides a broad overview of etiology, mechanism of pathogenesis and host resistance and IPM strategies involved in maize stalk rot and ear rot diseases in China. Some different viewpoints in the past are discussed in etiology of stalk rot occurring in China. The relation of both diseases is particularly evaluated based on Fusarium polymorphism analysis at the level of soluble protein, serology, isozymes and DNA, which are also further analyzed in accordance with the knowledge obtained by tracing pathogen infection process within the host root and stem tissue and trapping airborne spores nearby corn plants in the field. The recent researches of both diseases are summarized in physiological and biochemical mechanism of host resistance and resistant genetics, as well as IPM measures centered mainly in the application of biological control agents are summarized.%本文综述了我国在玉米茎基腐病和穗腐病病原学、致病性和寄主抗性机制与综合治理的研究进展.深入探讨了以往我国学者关于引起茎基腐病病原学的不同观点.根据2种病害的病原镰孢菌在可溶性蛋白质、血清学、同功酶和DNA等不同水平的多态性分析,镰孢菌在寄主根和茎组织内侵染过程示踪和孢子捕捉试验结果,重点讨论了2种镰孢菌病害在病原学侵染规律方面的相互关系,概述了2种病害寄主抗性生理生化机理、抗性遗传和以生物防治为核心的综合治理措施研究进展.

  8. Autochthonous arbuscular mycorrhizal fungi and Bacillus thuringiensis from a degraded Mediterranean area can be used to improve physiological traits and performance of a plant of agronomic interest under drought conditions.

    Science.gov (United States)

    Armada, Elisabeth; Azcón, Rosario; López-Castillo, Olga M; Calvo-Polanco, Mónica; Ruiz-Lozano, Juan Manuel

    2015-05-01

    Studies have shown that some microorganisms autochthonous from stressful environments are beneficial when used with autochthonous plants, but these microorganisms rarely have been tested with allochthonous plants of agronomic interest. This study investigates the effectiveness of drought-adapted autochthonous microorganisms [Bacillus thuringiensis (Bt) and a consortium of arbuscular mycorrhizal (AM) fungi] from a degraded Mediterranean area to improve plant growth and physiology in Zea mays under drought stress. Maize plants were inoculated or not with B. thuringiensis, a consortium of AM fungi or a combination of both microorganisms. Plants were cultivated under well-watered conditions or subjected to drought stress. Several physiological parameters were measured, including among others, plant growth, photosynthetic efficiency, nutrients content, oxidative damage to lipids, accumulation of proline and antioxidant compounds, root hydraulic conductivity and the expression of plant aquaporin genes. Under drought conditions, the inoculation of Bt increased significantly the accumulation of nutrients. The combined inoculation of both microorganisms decreased the oxidative damage to lipids and accumulation of proline induced by drought. Several maize aquaporins able to transport water, CO2 and other compounds were regulated by the microbial inoculants. The impact of these microorganisms on plant drought tolerance was complementary, since Bt increased mainly plant nutrition and AM fungi were more active improving stress tolerance/homeostatic mechanisms, including regulation of plant aquaporins with several putative physiological functions. Thus, the use of autochthonous beneficial microorganisms from a degraded Mediterranean area is useful to protect not only native plants against drought, but also an agronomically important plant such as maize.

  9. Efficiency of fungicides in the control of brown rot in peaches and its relationship with physiological parameters of the fruits

    Directory of Open Access Journals (Sweden)

    Elizandra Pivotto Pavanello

    2015-02-01

    Full Text Available The brown rot, caused by the fungus Monilinia fructicola, is the main cause for losses in pre and postharvest of peaches. The study aimed to evaluate the efficiency of preharvest application of fungicides on the control of brown rot in the field and during cold storage, and its relation to parameters of maturation and fruit quality. Therefore, we evaluated the following active ingredients: [1] control (water application, [2] captan; [3] iprodione; [4] iminoctadine; [5] tebuconazole; [6] procymidone; [7 ] azoxystrobin; [8] difenoconazole; [9] azoxystrobin / difenoconazole; [10] trifloxystrobin / tebuconazole; [11] sequence iminoctadine + captan; [12] sequence iminoctadine + iprodione; [13] sequence of tebuconazole + captan; [14] sequence of tebuconazole + iprodione. All treatments were applied according recommended doses and grace period for culture. The fruits were evaluated at harvest and after 40 days storage at –0.5 ° C, plus six days at 20 º C. At harvest time, the best control of brown rot was obtained with difenoconazole, while the fungicide iminoctadine and its association with iprodione showed good results in controlling brown rot after 40 days of cold storage, plus six days shelf life at 20 º C. The preharvest application of captan cause skin browning. The fungicide azoxystrobin influences the fruit maturation by decreasing acidity and firmness at harvest. Good levels of control of brown rot of peach can be achieved with the use of iminoctadine and iprodione.

  10. QTL mapping of fruit rot resistance to the plant pathogen Phytophthora capsici in a recombinant inbred line Capsicum annuum population.

    Science.gov (United States)

    Naegele, R P; Ashrafi, H; Hill, T A; Chin-Wo, S Reyes; Van Deynze, A E; Hausbeck, M K

    2014-05-01

    Phytophthora capsici is an important pepper (Capsicum annuum) pathogen causing fruit and root rot, and foliar blight in field and greenhouse production. Previously, an F6 recombinant inbred line population was evaluated for fruit rot susceptibility. Continuous variation among lines and partial and isolate-specific resistance were found. In this study, Phytophthora fruit rot resistance was mapped in the same F6 population between Criollo del Morelos 334 (CM334), a landrace from Mexico, and 'Early Jalapeno' using a high-density genetic map. Isolate-specific resistance was mapped independently in 63 of the lines evaluated and the two parents. Heritability of the resistance for each isolate at 3 and 5 days postinoculation (dpi) was high (h(2) = 0.63 to 0.68 and 0.74 to 0.83, respectively). Significant additive and epistatic quantitative trait loci (QTL) were identified for resistance to isolates OP97 and 13709 (3 and 5 dpi) and 12889 (3 dpi only). Mapping of fruit traits showed potential linkage with few disease resistance QTL. The partial fruit rot resistance from CM334 suggests that this may not be an ideal source for fruit rot resistance in pepper.

  11. Evaluation of an autochthonous starter culture on the production of a traditional dry fermented sausage from Chaco (Argentina) at a small-scale facility.

    Science.gov (United States)

    Palavecino Prpich, Noelia Z; Garro, Oscar A; Romero, Mara; Judis, María A; Cayré, María E; Castro, Marcela P

    2016-05-01

    The performance of a mixed starter culture, SAS-1, comprised of the autochthonous strains Lactobacillus sakei ACU-2 and Staphylococcus vitulinus ACU-10, was evaluated into the production process of a traditional dry sausage. Microbiological, physicochemical and sensory analyses were carried out to accomplish this goal. Results showed an improvement in performance through the introduction of SAS-1; adding mixed starter culture rapidly decreased pH, inhibited the growth of contaminant microorganisms and enhanced the beneficial ones, diminished TBARS, and highlighted color and aroma attributes. However, most influential organoleptic descriptors among consumer acceptance were not affected by the addition of the starter. This starter culture would represent a valuable tool to improve the homogeneity of artisanal manufacture of this traditional food.

  12. Confirmation of Sigillaria Brongniart as a coal-forming plant in Cathaysia: occurrence from an Early Permian autochthonous peat-forming flora in Inner Mongolia

    Energy Technology Data Exchange (ETDEWEB)

    Wang, J.; Feng, Z.; Zhang, Y.; Wang, S.J. [Chinese Academy of Sciences, Nanjing (China)

    2009-07-15

    A common lycopsid genus, Sigillaria Brongniart, has been recorded most frequently in peat-forming forests in Europe and North America, but rarely in China. Although Sigillaria, in China, has been found in coal balls and used as evidence that it was a coalforming element, it has never been recorded as compression/impressions in peat-forming settings. Recent investigation of an Early Permian autochthonous peat-forming flora of the Taiyuan Formation near Wuda, Inner Mongolia, has provided evidence that Sigillaria could be a major element of peat-forming vegetation in China. Sigillaria is the only arborescent lycopsid acting as a major contributor to peat/coal formation. The genus Sigillaria is another element that China has in common with the Palaeozoic low-land floras of Europe and North America, enhancing the common floral aspects between the tropical swamp vegetations of the east and west regions of the Palaeotethys Ocean.

  13. Influence of oligomeric herbicidal ionic liquids with MCPA and Dicamba anions on the community structure of autochthonic bacteria present in agricultural soil

    Energy Technology Data Exchange (ETDEWEB)

    Ławniczak, Ł., E-mail: lukasz.k.lawniczak@wp.pl [Department of Chemical Technology, Poznan University of Technology, 60-965 Poznan (Poland); Syguda, A., E-mail: Anna.Syguda@put.poznan.pl [Department of Chemical Technology, Poznan University of Technology, 60-965 Poznan (Poland); Borkowski, A., E-mail: a.borkowski@uw.edu.pl [Faculty of Geology, University of Warsaw, 02-089 Warsaw (Poland); Cyplik, P., E-mail: pcyplik@wp.pl [Department of Biotechnology and Food Microbiology, University of Life Sciences in Poznan, 60-627 Poznan (Poland); Marcinkowska, K., E-mail: k.marcinkowska@iorpib.poznan.pl [Institute of Plant Protection - National Research Institute, Poznan 60-318 (Poland); Wolko, Ł., E-mail: wolko@o2.pl [Department of Biochemistry and Biotechnology, Poznań University of Life Sciences in Poznan, 60-632 Poznan (Poland); Praczyk, T., E-mail: t.praczyk@iorpib.poznan.pl [Institute of Plant Protection - National Research Institute, Poznan 60-318 (Poland); Chrzanowski, Ł., E-mail: Lukasz.Chrzanowski@put.poznan.pl [Department of Chemical Technology, Poznan University of Technology, 60-965 Poznan (Poland); Pernak, J., E-mail: Juliusz.Pernak@put.poznan.pl [Department of Chemical Technology, Poznan University of Technology, 60-965 Poznan (Poland)

    2016-09-01

    The aim of this study was to evaluate the impact of selected herbicidal ionic liquids (HILs), which exhibit high efficacy in terms of weed control and low toxicity, but may be persistent due to limited biodegradability, on the community structure of autochthonic bacteria present in agricultural soil. Four different oligomeric HILs (with two types of cations and different ratio of herbicidal anions) were synthesized and characterized by employing {sup 1}H and {sup 13}C NMR. The results of biodegradation assay indicated that none of the tested HILs could be classified as readily biodegradable (biodegradation rate ranged from 0 to 7%). The conducted field studies confirmed that the herbicidal efficacy of the HILs was higher compared to the reference herbicide mixture by 10 to 30%, depending on the dose and weed species. After termination of field studies, the soil treated with the tested HILs was subjected to next generation sequencing in order to investigate the potential changes in the bacterial community structure. Proteobacteria was the dominant phylum in all studied samples. Treatment with the studied HILs resulted in an increase of Actinobacteria compared to the reference herbicidal mixture. Differenced among the studied HILs were generally associated with a significantly higher abundance of Bacteroidetes in case of 1-HIL-Dicamba 1/3 and Firmicutes in case of 2-HIL-Dicamba 1/3. - Highlights: • Impact of herbicidal ionic liquids on bacterial community structure was studied. • Oligomeric herbicidal ionic liquids were effective but not readily biodegradable. • Next generation sequencing was used to evaluate shifts in bacterial abundance. • Treatment during field trials resulted in changes at class and species level. • Use of herbicidal ionic liquids affects the structure of autochthonic soil bacteria.

  14. Therapeutic efficacy of antigen-specific vaccination and toll-like receptor stimulation against established transplanted and autochthonous melanoma in mice.

    Science.gov (United States)

    Tormo, Damia; Ferrer, Aleix; Bosch, Pilar; Gaffal, Evelyn; Basner-Tschakarjan, Etiena; Wenzel, Jörg; Tüting, Thomas

    2006-05-15

    Malignant melanoma is an attractive model disease for the development of antigen-specific immunotherapy because many antigens recognized by tumor-specific T cells have been identified. In C57BL/6 mice, genetic immunization with recombinant adenovirus encoding xenogeneic human tyrosinase-related protein 2 (Ad-hTRP2) induces protective but not therapeutic cellular immunity against growth of transplanted B16 melanoma cells. Here, we additionally applied CpG DNA and synthetic double-stranded RNA, which activate the innate immune system via Toll-like receptors (TLR). Both adenoviral vaccination and peritumoral injections of TLR ligands were required for rejection of established B16 melanoma in the skin. To more closely mimic the clinical situation in patients with melanoma, we evaluated this combined immunotherapeutic strategy in genetically modified mice, which overexpress hepatocyte growth factor (HGF) and carry an oncogenic mutation in the cyclin-dependent kinase 4 (CDK4)(R24C). HGF x CDK4(R24C) mice rapidly develop multiple invasive melanomas in the skin following neonatal carcinogen treatment, which spontaneously metastasize to lymph nodes and lungs. Vaccination with Ad-hTRP2 followed by injections of TLR ligands resulted in delayed growth of autochthonous primary melanomas in the skin and reduction in the number of spontaneous lung metastases but did not induce tumor regression. Carcinogen-treated HGF x CDK4(R24C) mice bearing multiple autochthonous melanomas did not reject transplanted B16 melanoma despite treatment with Ad-hTRP2 and TLR ligands, suggesting the development of tumor immunotolerance. Further investigations in our novel genetic melanoma model may help to better understand the role of the immune system in the pathogenesis and treatment of this life-threatening disease.

  15. Influence of autochthonous micro-organisms on sorption and remobilization of technetium and selenium. Final report; Einfluss der autochthonen Mikroflora auf die Sorption und Remobilisierung des Technetiums und des Selens. Abschlussbericht

    Energy Technology Data Exchange (ETDEWEB)

    Maue, G.; Stroetmann, I.; Dott, W. [Technische Univ. Berlin (Germany). Fachgebiet Umwelthygiene; Taute, T.; Winkler, A.; Pekdeger, A. [Freie Univ. Berlin (Germany). Fachrichtung Rohstoff- und Umweltgeologie

    1996-10-31

    Within this research project the influence of autochthonous mirco-organisms on immobilization and remobilization of Technetium and Selenium was investigated. Both redoxsensitive radionuclides are part of the waste of nuclear fuel (Tc app. 6%). Former investigations have shown, that immobilization behaviour of both elements could be influenced by micro-organisms. It has not been known, if the autochthonous (or in situ) organisms from greater depth do also have an influence on radionuclide mobility. The autochthonous populations of micro-organisms in deep sediments and their influence on the migration of Tc and Se were investigated in this study. For this reason recirculation column experiments were carried out. Absolutely sterile and anaerobic handling was necessary for the sampling and the further treatment of the sediments and waters used in the experiments. Therefor special methods for sampling, storage and handling had been developed. The results of recirculation column test with autochthonous micro-organisms were compared with sterile parallel tests and were verified with the results of an elaborated version of the hydrogeochemical equilibration code PHREEQE. It was shown that the autochthonous micro-organisms had only very little influence on the migration behaviour. The reason is the very low population (less than 10 E+6 CFU). Nevertheless it has to be taken into consideration, that conventional laboratory experiments for the estimation of the retention capacities of sediments for hazardous waste lead to an overestimation, if the sediments are contaminated with allochthonous micro-organisms (CFU=colony forming units). (orig.) [Deutsch] In dem Forschungsvorhaben wurde der Einfluss der autochthonen Mikroorgansimen auf die Mobilitaet von Technetium und Selen untersucht. Beide redoxsensitiven Radionuklide sind im Abfall von Kernbrennelementen enthalten (Tc ca. 6%). Aus vorangegangenen Forschungsarbeiten ist bekannt, dass die Mobilitaet der beiden Elemente durch

  16. 2009年甘肃省玉米穗腐病、茎基腐病的发生危害%Occurrence of maize kernel rot and corn stalk rot in Gansu in 2009

    Institute of Scientific and Technical Information of China (English)

    郭满库; 王晓鸣; 何苏琴; 刘永刚; 金社林; 曹世勤; 魏宏玉

    2011-01-01

    The occurrence and damage of maize kernel rot and corn stalk rot were comprehensively investigated in 21 counties of 9 cities in Gansu in 2009. The representative samples of the diseases were collected and the pathogens were isolated on PSA. The results showed that the disease of maize kernel rot and corn stalk rot seriously occurred in main maize-producing areas of the whole province. The rate of diseased fields reached to 100%, and the rate of diseased spikes and infected plants were 63.57% and 34.47%, respectively. The results of isolation showed that the main pathogens of maize kernel rot and corn stalk rot were Fusarium graminearum, F. Culmorum and F. Verticillioides (F. Moniliforme), but the dominant species of pathogens in different regions were different.%2009年对甘肃省9个市的21个县、区玉米穗腐病、茎基腐病的发生危害情况进行了全面调查,并采集病害标样,进行病原分离.调查结果表明,玉米穗腐病、茎基腐病在全省各玉米种植区均普遍严重发生,病田率100%,病穗率和病株率平均为63.57%和34.47.初步分离结果表明,全省玉米穗腐病、茎基腐病的主要致病菌为禾谷镰刀菌、黄色镰刀菌和轮枝镰孢菌,但在地区间的分布有明显差异.

  17. Infection courts and timing of infection of apple fruit by Phacidiopycnis washingtonensis in the orchard in relation to speck rot during storage

    Science.gov (United States)

    Phacidiopycnis washingtonensis is the cause of speck rot, a recently reported postharvest fruit rot disease of apple. The pathogen is believed to incite infections in the field, and disease symptoms become evident only during storage. To determine the timing of apple fruit infection in the orchard i...

  18. Resistance to toxin-mediated fungal infection: role of lignins, isoflavones, other seed phenolics, sugars and boron in the mechanism of resistance to charcoal rot disease in soybean

    Science.gov (United States)

    The objective of this research was to investigate the combined effects of charcoal rot and drought on total seed phenol, isoflavones, sugars, and boron in susceptible (S) and moderately resistant (MR) soybean genotypes to charcoal rot pathogen. A field experiment was conducted for two years under ir...

  19. Co-inoculation with rhizobia and arbuscular mycorrhizal fungi inhibited soybean red crown rot: from field study to plant defense-related gene expression analysis

    Science.gov (United States)

    Soybean red crown rot is a major soil-borne disease all over the world, which severely affects soybean production. Efficient and sustainable methods are strongly desired to control the soil-borne diseases. We investigated the disease incidence and index of soybean red crown rot under different pho...

  20. The Growth of Root Rot Disease on Pepper Seed Applied by Trichoderma Harzianum Inoculum

    Directory of Open Access Journals (Sweden)

    S. Sofian

    2013-06-01

    Full Text Available Normal 0 false false false IN X-NONE X-NONE MicrosoftInternetExplorer4 Root rot disease on pepper caused by Phytophthora capsici is one of the most important diseases on pepper. The using of antagonistic fungus of Trichoderma harzianum as a biological control agent of the pathogen is one of the important alternatives in controlling P. capsici without causing negative effects on the environment. The objectives of the research were to study about the ability of T. harzianum inoculum application in inhibiting the development of root-rot disease, influenced the growth of pepper seed, to studythe effective length time application of T. harzianum inoculum in inhibiting the development of root rot disease, and increased the growth of pepper seedlings. This research was arranged in a completely randomized design, with five treatments of length time application of T. harzianum inoculum i.e. control treatment without applicationtime of T. harzianum inoculum (K, application time of T. harzianum inoculum for 0 week (S0, application time of T. harzianum inoculum for 1 week (S1, application time of T. harzianum inoculum for two weeks (S2, application time of T. harzianum inoculum for three weeks (S3, and application time of T. harzianum inoculum for 4 weeks (S4 before planting. Each treatment was repeated15 times. The observed parameterswere disease percentage, the inhibition of antagonistic fungus, disease infection rate, plant height, number of leaves, wet and dry weight of plant, stem and leaves on pepper seed, and P. capsici population density. The result showed that application time of T. harzianum inoculumfor 4 weeks (S4 before planting is the most effective time in inhibiting the development of root rot disease than the other treatment sand also had significant effect on increasing the growth of pepper seed. The antagonism test showed that T. harzianum could inhibit P. capsiciin vitro. This result proves that application time of T. harzianum inoculums

  1. Influence of tree size, taxonomy, and edaphic conditions on heart rot in mixed-dipterocarp Bornean rainforests: implications for aboveground biomass estimates

    Directory of Open Access Journals (Sweden)

    K. D. Heineman

    2015-05-01

    Full Text Available Fungal decay of heartwood creates hollows and areas of reduced wood density within the stems of living trees known as heart rot. Although heart rot is acknowledged as a source of error in forest aboveground biomass estimates, there are few datasets available to evaluate the environmental controls over heart rot infection and severity in tropical forests. Using legacy and recent data from drilled, felled, and cored stems in mixed dipterocarp forests in Sarawak, Malaysian Borneo, we quantified the frequency and severity of heart rot, and used generalized linear mixed effect models to characterize the association of heart rot with tree size, wood density, taxonomy, and edaphic conditions. Heart rot was detected in 55% of felled stems > 30 cm DBH, while the detection frequency was lower for stems of the same size evaluated by non-destructive drilling (45% and coring (23% methods. Heart rot severity, defined as the percent stem volume lost in infected stems, ranged widely from 0.1–82.8%. Tree taxonomy explained the greatest proportion of variance in heart rot frequency and severity among the fixed and random effects evaluated in our models. Heart rot frequency, but not severity, increased sharply with tree diameter, ranging from 56% infection across all datasets in stems > 50 cm DBH to 11% in trees 10–30 cm DBH. The frequency and severity of heart rot increased significantly in soils with low pH and cation concentrations in topsoil, and heart rot was more common in tree species associated with dystrophic sandy soils than with nutrient-rich clays. When scaled to forest stands, the percent of stem biomass lost to heart rot varied significantly with soil properties, and we estimate that 7% of the forest biomass is in some stage of heart rot decay. This study demonstrates not only that heart rot is a significant source of error in forest carbon estimates, but also that it strongly covaries with soil resources, underscoring the need to account for

  2. Adaptive expression of host cell wall degrading enzymes in fungal disease: an example from Fusarium root rot of medicinal Coleus.

    Science.gov (United States)

    Bhattacharya, A

    2013-12-15

    Quantity of extracellular proteins and activities two cell wall degrading enzymes pectinase and cellulase were determined in the culture filtrate of Fusarium solani, the causal organism of root rot of Coleus forskohlii. Substitution of carbon source in the medium with either pectin or carboxymethyl cellulose led to the increased production of extracellular proteins by the fungus. Pectinase and cellulase activity in the culture filtrate was detected only when the growth medium contained substituted carbon source in the form of pectin and CMC, respectively. Pectinase activity was highest after 5 days incubation and then decreased gradually with time but cellulase activity showed a steady time dependent increase. In vitro virulence study showed the requirement of both the enzymes for complete expression of rot symptoms on Coleus plants. Thus the present study established the adaptive, substrate dependent expression of the two enzymes by the fungus and also their involvement in the root rot disease of Coleus forskohlii.

  3. Pretreatment of non-sterile, rotted silage maize straw by the microbial community MC1 increases biogas production.

    Science.gov (United States)

    Hua, Binbin; Dai, Jiali; Liu, Bin; Zhang, Huan; Yuan, Xufeng; Wang, Xiaofen; Cui, Zongjun

    2016-09-01

    Using microbial community MC1 to pretreat lignocellulosic materials increased the yield of biogas production, and the substrate did not need to be sterilized, lowering the cost. Rotted silage maize straw carries many microbes. To determine whether such contamination affects MC1, rotted silage maize straw was pretreated with MC1 prior to biogas production. The decreases in the weights of unsterilized and sterilized rotted silage maize straw were similar, as were their carboxymethyl cellulase activities. After 5d pretreatment, denaturing gradient gel electrophoresis and quantitative polymerase chain reaction results indicated that the proportions of five key strains in MC1 were the same in the unsterilized and sterilized groups; thus, MC1 was resistant to microbial contamination. However, its resistance to contamination decreased as the degradation time increased. Following pretreatment, volatile fatty acids, especially acetic acid, were detected, and MC1 enhanced biogas yields by 74.7% compared with the untreated group.

  4. Inhibitory effect of chitosan on growth of the fungal phytopathogen, Sclerotinia sclerotiorum, and sclerotinia rot of carrot

    Institute of Scientific and Technical Information of China (English)

    WANG Qing; ZUO Jin-hua; WANG Qian; NA Yang; GAO Li-pu

    2015-01-01

    The antifungal activity of chitosan on a common fungal phytopathogen, Sclerotinia sclerotiorum, and the control effect on sclerotinia rot of carrot were investigated. Mycelial growth and fungal biomass were strongly inhibited by chitosan. Using propidium iodide stain combined with lfuorescent microscopy, the plasma membrane of chitosan-treated S. sclerotiorum mycelia was observed to be markedly damaged. Concomitantly, protein leakage and lipid peroxidation was also found to be signiifcantly higher in chitosan-treated mycelia compared to the control. Chitosan provided an effective control of sclerotinia rot of carrot, with induction of activity of defense-related enzymes including polyphenoloxidase and peroxidase. These data suggest that the effects of chitosan on sclerotinia rot of carrot may be associated with the direct damage to the plasma membrane and lipid peroxidation of S. sclerotiorum, and the elicitation of defense response in carrot.

  5. In Vitro Antagonism of Bacillus thuringiensis NCIM2130 against Sclerotium rolfsii Sacc., A Stem Rot Pathogen of Groundnut

    Directory of Open Access Journals (Sweden)

    Ravindra. R. Rakh

    2016-12-01

    Full Text Available Stem rot is one of the most drastic diseases of groundnut that cause major crop loss. Stem rot pathogen of groundnut, Sclerotium rolfsii, was isolated from the infected groundnut stem. Present investigation was started to search for effective biocontrol agent against Sclerotium rolfsii. To find effective biocontrol agent, 120 Bacillus spp. isolated from various rhizospheric soils of healthy plants, screened in vitro against the stem rot pathogen by dual culture technique. Out of these Bacillus spp, Bacillus 57 isolate found effective in controlling the phytopathogen by Novel Ring method (80.21 %. Bacillus 57 was identified by 16S rRNA sequencing as Bacillus thuringiensis NCIM2130. To effectively control the phytopathogen in vitro, the Bacillus thuringiensis NCIM2130 produced the Volatile metabolites, and Siderophore.

  6. Thermal control of some post-harvest rot pathogens of Irish potato (solanum tuberosum l.

    Directory of Open Access Journals (Sweden)

    Salami Olusola Abiodun

    2007-01-01

    Full Text Available Thermal control effect on the incidence of some post-harvest rot pathogens of Solanum tuberosum (potato was investigated in this study. Three cultivars of potato tuber whose local names are, Patiska, Mai Bawondoya and Nicola were used for the study. Five pathogenic fungi viz: Botryodiplodia theobromae, Fusarium redolens, Fusarium oxysporum, Penicillium sp. and Rhizopus oryzae associated with post harvest storage rot of root-tubers, were isolated from diseased potatoes. Among the three species of potatoes used in the study, Patiska was found most resistant followed by Mai Bawondoya, while Nicola was the least resistant. Increase in substrate (i.e. soluble starch or CMC concentration enhanced a proportional increase in mycelial growth and in the amount of extracellular enzymes produced. Some of these test pathogens were found to produce cell wall degrading enzymes (i.e. amylase and cellulase. Preferential utilization of carbohydrate sources was established in this study based on the growth of test pathogens. Growth on potato broth medium was highest followed by growth on Cocoyam and Sweet potato broth media and least on Cassava broth medium. Growth of the test pathogens on carbohydrate sources was found at variant. The use of hot water treatment at different temperatures was found to significantly reduce post-harvest fungal populations on the surface of root-tubers. The efficacy of blanching in hot water at 60˚C was significantly higher than that of blanching in hot water at other temperatures. The control method adopted in this study showed that the problems of potatoes’ rot disease in storage (especially by the peasant farmers can be eradicated by thermal treatments without reducing the quality of the Irish tuber.

  7. Phylogenetic, Morphological, and Pathogenic Characterization of Alternaria Species Associated with Fruit Rot of Blueberry in California.

    Science.gov (United States)

    Zhu, X Q; Xiao, C L

    2015-12-01

    Fruit rot caused by Alternaria spp. is one of the most important factors affecting the postharvest quality and shelf life of blueberry fruit. The aims of this study were to characterize Alternaria isolates using morphological and molecular approaches and test their pathogenicity to blueberry fruit. Alternaria spp. isolates were collected from decayed blueberry fruit in the Central Valley of California during 2012 and 2013. In total, 283 isolates were obtained and five species of Alternaria, including Alternaria alternata, A. tenuissima, A. arborescens, A. infectoria, and A. rosae, were identified based on DNA sequences of the plasma membrane ATPase, Alt a1 and Calmodulin gene regions in combination with morphological characters of the culture and sporulation. Of the 283 isolates, 61.5% were identified as A. alternata, 32.9% were A. arborescens, 5.0% were A. tenuissima, and only one isolate of A. infectoria and one isolate of A. rosae were found. These fungi were able to grow at temperatures from 0 to 35°C, and mycelial growth was arrested at 40°C. Optimal radial growth occurred between 20 to 30°C. Pathogenicity tests showed that all five Alternaria spp. were pathogenic on blueberry fruit at 0, 4, and 20°C, with A. alternata, A. arborescens, and A. tenuissima being the most virulent species, followed by A. infectoria and A. rosae. Previously A. tenuissima has been reported to be the primary cause of Alternaria fruit rot of blueberry worldwide. Our results indicated that the species composition of Alternaria responsible for Alternaria fruit rot in blueberry can be dependent on geographical region. A. alternata, A. arborescens, A. infectoria, and A. rosae are reported for the first time on blueberry in California. This is also the first report of A. infectoria and A. rosae infecting blueberry fruit.

  8. The Genetic Structure of Phellinus noxius and Dissemination Pattern of Brown Root Rot Disease in Taiwan.

    Directory of Open Access Journals (Sweden)

    Chia-Lin Chung

    Full Text Available Since the 1990s, brown root rot caused by Phellinus noxius (Corner Cunningham has become a major tree disease in Taiwan. This fungal pathogen can infect more than 200 hardwood and softwood tree species, causing gradual to fast decline of the trees. For effective control, we must determine how the pathogen is disseminated and how the new infection center of brown root rot is established. We performed Illumina sequencing and de novo assembly of a single basidiospore isolate Daxi42 and obtained a draft genome of ~40 Mb. By comparing the 12,217 simple sequence repeat (SSR regions in Daxi42 with the low-coverage Illumina sequencing data for four additional P. noxius isolates, we identified 154 SSR regions with potential polymorphisms. A set of 13 polymorphic SSR markers were then developed and used to analyze 329 P. noxius isolates collected from 73 tree species from urban/agricultural areas in 14 cities/counties all around Taiwan from 1989 to 2012. The results revealed a high proportion (~98% of distinct multilocus genotypes (MLGs and that none of the 329 isolates were genome-wide homozygous, which supports a possible predominant outcrossing reproductive mode in P. noxius. The diverse MLGs exist as discrete patches, so brown root rot was most likely caused by multiple clones rather than a single predominant strain. The isolates collected from diseased trees near each other tend to have similar genotype(s, which indicates that P. noxius may spread to adjacent trees via root-to-root contact. Analyses based on Bayesian clustering, FST statistics, analysis of molecular variance, and isolation by distance all suggest a low degree of population differentiation and little to no barrier to gene flow throughout the P. noxius population in Taiwan. We discuss the involvement of basidiospore dispersal in disease dissemination.

  9. The Genetic Structure of Phellinus noxius and Dissemination Pattern of Brown Root Rot Disease in Taiwan.

    Science.gov (United States)

    Chung, Chia-Lin; Huang, Shun-Yuan; Huang, Yu-Ching; Tzean, Shean-Shong; Ann, Pao-Jen; Tsai, Jyh-Nong; Yang, Chin-Cheng; Lee, Hsin-Han; Huang, Tzu-Wei; Huang, Hsin-Yu; Chang, Tun-Tschu; Lee, Hui-Lin; Liou, Ruey-Fen

    2015-01-01

    Since the 1990s, brown root rot caused by Phellinus noxius (Corner) Cunningham has become a major tree disease in Taiwan. This fungal pathogen can infect more than 200 hardwood and softwood tree species, causing gradual to fast decline of the trees. For effective control, we must determine how the pathogen is disseminated and how the new infection center of brown root rot is established. We performed Illumina sequencing and de novo assembly of a single basidiospore isolate Daxi42 and obtained a draft genome of ~40 Mb. By comparing the 12,217 simple sequence repeat (SSR) regions in Daxi42 with the low-coverage Illumina sequencing data for four additional P. noxius isolates, we identified 154 SSR regions with potential polymorphisms. A set of 13 polymorphic SSR markers were then developed and used to analyze 329 P. noxius isolates collected from 73 tree species from urban/agricultural areas in 14 cities/counties all around Taiwan from 1989 to 2012. The results revealed a high proportion (~98%) of distinct multilocus genotypes (MLGs) and that none of the 329 isolates were genome-wide homozygous, which supports a possible predominant outcrossing reproductive mode in P. noxius. The diverse MLGs exist as discrete patches, so brown root rot was most likely caused by multiple clones rather than a single predominant strain. The isolates collected from diseased trees near each other tend to have similar genotype(s), which indicates that P. noxius may spread to adjacent trees via root-to-root contact. Analyses based on Bayesian clustering, FST statistics, analysis of molecular variance, and isolation by distance all suggest a low degree of population differentiation and little to no barrier to gene flow throughout the P. noxius population in Taiwan. We discuss the involvement of basidiospore dispersal in disease dissemination.

  10. Chemical Characterization of Different Sumac and Pomegranate Extracts Effective against Botrytis cinerea Rots.

    Science.gov (United States)

    Romeo, Flora V; Ballistreri, Gabriele; Fabroni, Simona; Pangallo, Sonia; Nicosia, Maria Giulia Li Destri; Schena, Leonardo; Rapisarda, Paolo

    2015-06-30

    Pomegranate (Punica granatum L.) peel and sumac (Rhus coriaria L.) fruit and leaf extracts were chemically characterized and their ability to inhibit table grape (cv. Italia) rots caused by Botrytis cinerea was evaluated on artificially inoculated berries. Different extraction methods were applied and extracts were characterized through Ultra Fast High Performance Liquid Chromatography coupled to Photodiode array detector and Electrospray ionization Mass spectrometer (UPLC-PDA-ESI/MSn) for their phenol and anthocyanin contents. The concentrated pomegranate peel extract (PGE-C) was the richest in phenols (66.97 g gallic acid equivalents/kg) while the concentrated sumac extract from fruits (SUF-C) showed the highest anthocyanin amount (171.96 mg cyanidin 3-glucoside equivalents/kg). Both phenolic and anthocyanin profile of pomegranate and sumac extracts were quite different: pomegranate extract was rich in cyanidin 3-glucoside, pelargonidin 3-glucoside and ellagic acid derivatives, while sumac extract was characterized by 7-methyl-cyanidin 3-galactoside and gallic acid derivatives. The concentrated extracts from both pomegranate peel and sumac leaves significantly reduced the development of Botrytis rots. In particular, the extract from pomegranate peel completely inhibited the pathogen at different intervals of time (0, 12, and 24 h) between treatment and pathogen inoculation on fruits maintained at 22-24 °C and high relative humidity (RH). This extract may represent a valuable alternative to control postharvest fungal rots in view of its high efficacy because of the low cost of pomegranate peel, which is a waste product of processing factories.

  11. Specificity of monoclonal antibodies to strains of Dickeya sp. that cause bacterial heart rot of pineapple.

    Science.gov (United States)

    Peckham, Gabriel D; Kaneshiro, Wendy S; Luu, Van; Berestecky, John M; Alvarez, Anne M

    2010-10-01

    During a severe outbreak of bacterial heart rot that occurred in pineapple plantations on Oahu, Hawaii, in 2003 and years following, 43 bacterial strains were isolated from diseased plants or irrigation water and identified as Erwinia chrysanthemi (now Dickeya sp.) by phenotypic, molecular, and pathogenicity assays. Rep-PCR fingerprint patterns grouped strains from pineapple plants and irrigation water into five genotypes (A-E) that differed from representatives of other Dickeya species, Pectobacterium carotovorum and other enteric saprophytes isolated from pineapple. Monoclonal antibodies produced following immunization of mice with virulent type C Dickeya sp. showed only two specificities. MAb Pine-1 (2D11G1, IgG1 with kappa light chain) reacted to all 43 pineapple/water strains and some reference strains (D. dianthicola, D. chrysanthemi, D. paradisiaca, some D. dadantii, and uncharacterized Dickeya sp.) but did not react to reference strains of D. dieffenbachiae, D. zeae, or one of the two Malaysian pineapple strains. MAb Pine-2 (2A7F2, IgG3 with kappa light chain) reacted to all type B, C, and D strains but not to any A or E strains or any reference strains except Dickeya sp. isolated from Malaysian pineapple. Pathogenicity tests showed that type C strains were more aggressive than type A strains when inoculated during cool months. Therefore, MAb Pine-2 distinguishes the more virulent type C strains from less virulent type A pineapple strains and type E water strains. MAbs with these two specificities enable development of rapid diagnostic tests that will distinguish the systemic heart rot pathogen from opportunistic bacteria associated with rotted tissues. Use of the two MAbs in field assays also permits the monitoring of a known subpopulation and provides additional decision tools for disease containment and management practices.

  12. Lignin-modifying enzymes of the white rot basidiomycete Ganoderma lucidum

    Energy Technology Data Exchange (ETDEWEB)

    D/Souza, T.M.; Merritt, C.S.; Reddy, C.A.

    1999-12-01

    Ganoderma lucidum, a white rot basidiomycete widely distributed worldwide, was studied for the production of the lignin-modifying enzymes laccase, manganese-dependent peroxidase (MnP), and lignin peroxidase (LiP). Laccase levels observed in high-nitrogen shaken cultures were much greater than those seen in low-nitrogen, malt extract, or wool-grown cultures and those reported for most other white rot fungi to date. Laccase production was readily seen in cultures grown with pine or poplar as the sole carbon and energy source. Cultures containing both pine and poplar showed 5- to 10-fold-higher levels of laccase than cultures containing pine or poplar alone. Since syringyl units are structural components important in poplar lignin and other hardwoods but much less so in pine lignin and other softwoods, pine cultures were supplemented with syringic acid, and this resulted in laccase levels comparable to those seen in pine-plus-poplar cultures. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis of concentrated extracellular culture fluid from HM cultures showed two laccase activity bands, where as isoelectric focusing revealed five major laccase activity bands with estimated pIs of 3.0, 4.25, 4.5, and 5.1. Low levels of MnP activity were detected in poplar-grown cultures but not in cultures grown with pine, with pine plus syringic acid, or in HN medium. No LiP activity was seen in any of the media tested; however, probing the genomic DNA with the LiP cDNA (CLG4) from the white rot fungus Phanerochaete chrysosporium showed distinct hybridization bands suggesting the presence of lip-like sequences in G. lucidum.

  13. Extracellular oxidases and the transformation of solubilised low-rank coal by wood-rot fungi

    Energy Technology Data Exchange (ETDEWEB)

    Ralph, J.P. [Flinders Univ. of South Australia, Bedford Park (Australia). School of Biological Sciences; Graham, L.A. [Flinders Univ. of South Australia, Bedford Park (Australia). School of Biological Sciences; Catcheside, D.E.A. [Flinders Univ. of South Australia, Bedford Park (Australia). School of Biological Sciences

    1996-12-31

    The involvement of extracellular oxidases in biotransformation of low-rank coal was assessed by correlating the ability of nine white-rot and brown-rot fungi to alter macromolecular material in alkali-solubilised brown coal with the spectrum of oxidases they produce when grown on low-nitrogen medium. The coal fraction used was that soluble at 3.0{<=}pH{<=}6.0 (SWC6 coal). In 15-ml cultures, Gloeophyllum trabeum, Lentinus lepideus and Trametes versicolor produced little or no lignin peroxidase, manganese (Mn) peroxidase or laccase activity and caused no change to SWC6 coal. Ganoderma applanatum and Pycnoporus cinnabarinus also produced no detectable lignin or Mn peroxidases or laccase yet increased the absorbance at 400 nm of SWC6 coal. G. applanatum, which produced veratryl alcohol oxidase, also increased the modal apparent molecular mass. SWC6 coal exposed to Merulius tremellosus and Perenniporia tephropora, which secreted Mn peroxidases and laccase and Phanerochaete chrysosporium, which produced Mn and lignin peroxidases was polymerised but had unchanged or decreased absorbance. In the case of both P. chrysosporium and M. tremellosus, polymerisation of SWC6 coal was most extensive, leading to the formation of a complex insoluble in 100 mM NaOH. Rigidoporus ulmarius, which produced only laccase, both polymerised and reduced the A{sub 400} of SWC6 coal. P. chrysosporium, M. tremellosus and P. tephropora grown in 10-ml cultures produced a spectrum of oxidases similar to that in 15-ml cultures but, in each case, caused more extensive loss of A{sub 400}, and P. chrysosporium depolymerised SWC6 coal. It is concluded that the extracellular oxidases of white-rot fungi can transform low-rank coal macromolecules and that increased oxygen availability in the shallower 10-ml cultures favours catabolism over polymerisation. (orig.)

  14. Chemical Characterization of Different Sumac and Pomegranate Extracts Effective against Botrytis cinerea Rots

    Directory of Open Access Journals (Sweden)

    Flora V. Romeo

    2015-06-01

    Full Text Available Pomegranate (Punica granatum L. peel and sumac (Rhus coriaria L. fruit and leaf extracts were chemically characterized and their ability to inhibit table grape (cv. Italia rots caused by Botrytis cinerea was evaluated on artificially inoculated berries. Different extraction methods were applied and extracts were characterized through Ultra Fast High Performance Liquid Chromatography coupled to Photodiode array detector and Electrospray ionization Mass spectrometer (UPLC-PDA-ESI/MSn for their phenol and anthocyanin contents. The concentrated pomegranate peel extract (PGE-C was the richest in phenols (66.97 g gallic acid equivalents/kg while the concentrated sumac extract from fruits (SUF-C showed the highest anthocyanin amount (171.96 mg cyanidin 3-glucoside equivalents/kg. Both phenolic and anthocyanin profile of pomegranate and sumac extracts were quite different: pomegranate extract was rich in cyanidin 3-glucoside, pelargonidin 3-glucoside and ellagic acid derivatives, while sumac extract was characterized by 7-methyl-cyanidin 3-galactoside and gallic acid derivatives. The concentrated extracts from both pomegranate peel and sumac leaves significantly reduced the development of Botrytis rots. In particular, the extract from pomegranate peel completely inhibited the pathogen at different intervals of time (0, 12, and 24 h between treatment and pathogen inoculation on fruits maintained at 22–24 °C and high relative humidity (RH. This extract may represent a valuable alternative to control postharvest fungal rots in view of its high efficacy because of the low cost of pomegranate peel, which is a waste product of processing factories.

  15. Cooperative effects of two optical dipole antennas coupled to plasmonic Fabry-Pérot cavity.

    Science.gov (United States)

    Yang, Zhong-Jian; Wang, Qu-Quan; Lin, Hai-Qing

    2012-09-07

    We investigate the cooperative effects of two optical dipole antennas that are coupled to a finite Au nanowire acting as plasmonic Fabry-Pérot (F-P) cavity. The coherent coupling between one single antenna and the F-P cavity can result in Fano resonance, and the coupling strength is antenna position dependent. For two antennas coupled to the F-P cavity, constructive or destructive interference between antennas could be achieved by adjusting their positions along the F-P cavity. Consequently, the Fano resonance will become stronger or weaker correspondingly.

  16. Mineralization of polycyclic aromatic hydrocarbons by the white rot fungus Pleurotus ostreatus

    Energy Technology Data Exchange (ETDEWEB)

    Bezalel, L.; Hadar, Y. [Hebrew Univ. of Jerusalem, Rehovot (Israel); Cerniglia, C.E. [National Center for Toxicological Research, Jefferson, AR (United States)

    1996-01-01

    White rot fungi, including Pleurotus ostreatus, have the ability to efficiently degrade lignin, a naturally occurring aromatic polymer. Previous work has found these organisms were able to degrade PAHs and in some cases to mineralize them; most of the work was done with Phanerochaete chrysosporium. P. ostreatus differs from P. chrysosporium in its lignin degradation mechanism. In this study, enzymatic activities were monitored during P. ostreatus growth in the presence of PAHs and the fungus`s ability to mineralize catechol and various PAHs was demonstrated. 29 refs., 3 figs., 1 tab.

  17. Triple Fabry-Pérot Imaging Interferometer for High Resolution Solar Spectroscopy using the ATST

    Science.gov (United States)

    Robinson, B. M.; Gary, G. A.; Balasubramaniam, K. S.

    2005-05-01

    We present a telecenrically mounted triple Fabry-Pérot imaging interferometer for the NSOs Advanced Technology Solar Telescope (ATST). It consists of three Fabry-Pérot etalons and the feed and imaging optics. This system provides high throughput, flexibility and breadth of operation when compared to other spectroscopic imaging systems. It can operate in four distinct modes: as a spectro-polarimeter, a filter-vector magnetograph, an intermediate-band imager, and broadband high-resolution imager. In the proposed telecentric mount configuration, the transmittance of the etalon system is not a function of position in the field, so that instantaneous spectroscopic measurements can be performed across the entire field of view; however, the transmission peak of the interferometer is broadened. Mitigation of this broadening requires a low F# image at the etalons. Together with the requirement that the field of view be large enough to observe large-scale processes in the solar atmosphere, this limitation dictates that the diameter of the etalons have a large aperture. Specifically, for a spectrographic passband full-width at half-maximum (FWHM) of around 2 pm, and entrance pupil diameter of 4 m, and a field of view of 35", the required etalon diameter is around 200 mm. This is beyond the size of current Fabry-Pérot etalons and near the current projected limit of manufacturability. The development of this instrument will bring these large etalons to realization and take Fabry-Pérot imaging interferometry to the next level of operational capability within telescopes of large aperture. This instrument will provide spectral, spatial, and temporal resolution which is not currently available to large aperture solar astronomy, but which is necessary, in conjunction with the new class telescopes, to the continuing discovery of laws that govern the dynamics of the sun and the earth-sun connection. The resolution afforded by higher aperture telescopes and instrumentation will

  18. Asymmetric Fabry-Pérot interferometric cavity for fiber optical sensors

    Institute of Scientific and Technical Information of China (English)

    Shaoji Jiang; Youcheng Liang; Xi Zhu; Hezhou Wang

    2006-01-01

    Good linearity and wide dynamic range are the advantages of asymmetric Fabry-Pérot (F-P) interferometric cavity, whose realization has been long for. Based on optical thin film characteristic matrix theory, an asymmetric F-P interferometric cavity with good linearity and wide dynamic range is designed. And by choosing the material of two different thin metallic layers, the asymmetric F-P interferometric cavity is successfully fabricated. The design theory and method of this asymmetric F-P interferometric cavity have been described in detailed. In this paper an asymmetric F-P interferometric cavity used in fiber optical sensor is reported.

  19. Extraction and Study of Bacteriophages, Used against Agents of Potato Soft Rot

    Directory of Open Access Journals (Sweden)

    Magda D. Davitashvili

    2012-12-01

    Full Text Available The use of specific bacteriophages and their complex mixtures against bacterial diseases is very effective. As for causative agent of potato soft rot Erwinia carotovora, specific phages (25 phages in total were extracted from diseased potato, soil and sewage. The study of their biological properties showed the diversity of phages in terms of lytic action, virion plaque and morphology, as well as in relation to different environmental factors. Phages showed explicit antibacterial activity in vitro in liquid and solid media, as well as during model tests of potato tubers artificial inoculation.

  20. Scanning Gate Microscopy of Kondo Dots: Fabry-Pérot Interferences and Thermally Induced Rings

    OpenAIRE

    Kleshchonok, Andrii; Fleury, Geneviève; Pichard, Jean-Louis

    2013-01-01

    5 pages, 4 figures; We study the conductance of an electron interferometer formed in a two dimensional electron gas between a nanostructured quantum contact and the charged tip of a scanning gate microscope. Measuring the conductance as a function of the tip position, thermally induced rings may be observed in addition to Fabry-Pérot interference fringes spaced by half the Fermi wavelength. If the contact is made of a quantum dot opened in the middle of a Kondo valley, we show how the locatio...

  1. Mallas tensegríticas de doble capa y manipulaciones de Rot-Umbela

    Directory of Open Access Journals (Sweden)

    Gómez-Jáuregui, V.

    2012-09-01

    Full Text Available Double-layer tensegrity grids (DLTGs are tensegrity spatial systems containing two parallel networks of members in tension forming the top and bottom chords, whose nodes are linked by vertical and/or inclined web members under compression and tension. This paper presents, as an introduction, a brief perspective of the historical proposals for DLTGs over the last years, describing later a new approach for generating these kinds of structures, mainly in geometrical terms. After applying Otero’s proposal for designing conventional double-layer grids (DLGs, a new technique, known as Rot-Umbela Manipulation, is applied to their upper and/or lower layers for generating DLTGs. Rot-Umbela Manipulation consists of opening a vertex in the plane for obtaining a certain polygon, which is then rotated by a determined angle. This powerful operation opens an endless catalogue of DLTGs and a very interesting line of research in the field of Tensegrity.

    Las mallas tensegríticas de doble capa (MTDC son estructuras de Tensegridad que contiene dos mallas traccionadas paralelas, unidas por otra capa intermedia compuesta por elementos comprimidos y traccionados verticales y/o diagonales. Este trabajo presenta inicialmente un breve repaso sobre las propuestas de MTDC que se han realizado hasta el momento, exponiendo luego una nueva metodología, eminentemente geométrica, para la generación de este tipo de estructuras tensegríticas. Tras aplicar la propuesta de Otero para generar mallas de doble capa (MDC convencionales, se procede a realizar Manipulaciones de Rot-Umbela en las capas inferior y/o superior para convertir dicha estructura en una MTDC. Las Manipulaciones de Rot-Umbela consisten en la apertura de cada vértice en un cierto polígono, al cual se le aplica una rotación o giro particular. Se consigue así un potente sistema para “tensegritizar” MDC convencionales y abrir una línea de investigación muy interesante en el campo de la

  2. Stenotrophomonas maltophilia: a new potential biocontrol agent of Ralstonia solanacearum, causal agent of potato brown rot

    OpenAIRE

    Messiha, N.A.S.; Diepeningen, van, A.D.; Farag, N.S.; Abdallah, S.A.; Janse, J.D.; Bruggen, van, A.S.

    2007-01-01

    Stenotrophomonas maltophilia was isolated from the rhizosphere of eggplant in the Nile Delta of Egypt, and its antagonistic potential against Ralstonia solanacearum race 3 biovar 2, the causal agent of potato brown rot, was in vitro evaluated on KB agar medium and in vivo on potato plants. In vitro, four isolates of S. maltophilia (PD3531, PD3532, PD3533, and PD3534) appeared antagonistic. The isolate (PD3533) was screened as the most promising antagonist for the in vivo tests. In the greenho...

  3. External Electro-optic Sampling Utilizing an Asymmetric Fabry-Pérot Film of Poled Electro-optical Polymer

    Institute of Scientific and Technical Information of China (English)

    陈开鑫; 杨罕; 张大明; 张红波; 衣茂斌

    2001-01-01

    External electro-optic sampling has been first demonstrated using a poled electro-optical polymer asymmetricFabry-Pérot film, placed freely on the indium-tin oxide coplanar waveguide transmission line and used as anelectro-optic probe tip. Only one laser beam is required due to the fact that the asymmetric Fabry-Pérot film isutilized to convert the phase modulation to amplitude modulation. A 1.2 GHz microwave signal is sampled, andthe voltage sensitivity of about 2 m V/Hz is obtained. The results are promising for technical applications inhigh-speed electronic devices and monolithic microwave integrated circuits research.

  4. An attempt of postharvest orange fruit rot control using essential oils from Mediterranean plants.

    Science.gov (United States)

    Camele, Ippolito; De Feo, Vincenzo; Altieri, Luciana; Mancini, Emilia; De Martino, Laura; Luigi Rana, Gian

    2010-12-01

    Twelve essential oils from Mediterranean aromatic plants were tested at different doses against four fungi known as causal agents of post-harvest orange fruit rot: Botrytis cinerea, Penicillium italicum, Phytophthora citrophthora, and Rhizopus stolonifer. Essential oils were obtained from Hyssopus officinalis, Lavandula angustifolia, Majorana hortensis, Melissa officinalis, Ocimum basilicum, Origanum vulgare, Salvia officinalis, and Thymus vulgaris (Family Lamiaceae), Verbena officinalis (Family Verbenaceae), and Pimpinella anisum, Foeniculum vulgare, and Carum carvi (Family Apiaceae). Because preliminary in vitro experiments showed that only the oils from V. officinalis, T. vulgaris, and O. vulgare exhibited some fungistatic activity against the above-named fungi, these three essential oils were used in successive in vivo tests carried out to protect healthy "Washington navel" orange fruits from artificial infection by the same micromycetes. The essential oil of T. vulgaris, at a 2,000 ppm dose, controlled fruit rot by B. cinerea, P. citrophthora, and R. stolonifer but was ineffective against P. italicum. Essential oils of V. officinalis and O. vulgare inhibited infection by the first two fungi and only by P. citrophthora, respectively. This finding represents an important result, with the goal of using the essential oils as natural preservatives for food products, due to their positive effect on their safety and shelf life.

  5. Identification of genes involved in the response of banana to crown rot disease.

    Science.gov (United States)

    Lassois, Ludivine; Frettinger, Patrick; de Lapeyre de Bellaire, Luc; Lepoivre, Philippe; Jijakli, Haissam

    2011-01-01

    Variations in banana susceptibility to crown rot disease have been observed but the molecular mechanisms underlying these quantitative host-pathogen relationships are still unknown. This study was designed to compare gene expression between crowns of banana fruit showing a high susceptibility (S(+)) and crowns showing a low susceptibility (S(-)) to the disease. Comparisons were performed at two situation times: i) between crowns (S(+) and S(-)) collected 1 h before inoculation and ii) between crowns (S+ and S-) collected 13 days after inoculation. Gene expression comparisons were performed with cDNA-amplified fragment length polymorphism (AFLP) and results were confirmed by real-time reverse-transcription polymerase chain reaction. Among genes identified as differentially expressed between S(+) and S(-) crowns, two were involved in signal transduction, three in proteolytic machinery, two had similarity to pathogenesis-related protein 14, one to a CCR4-associated factor protein, and one to a cellulose synthase. Paradoxically, the overexpression of the cellulose synthase gene was associated with banana showing a high susceptibility in both pre- and post-inoculation situations. Finally, the cDNA-AFLP identified a gene that seems to be associated with the quantitative banana responses to crown rot disease; this gene encodes a dopamine-β-monooxygenase, which is involved in the catecholamine pathway. To our knowledge, this work is the first to address both pre- and post-infection gene expression with the same host-pathogen combination and distinct susceptibility levels.

  6. Efficacy of Chaetomium Species as Biological Control Agents against Phytophthora nicotianae Root Rot in Citrus.

    Science.gov (United States)

    Hung, Phung Manh; Wattanachai, Pongnak; Kasem, Soytong; Poeaim, Supattra

    2015-09-01

    Thailand is one of the largest citrus producers in Southeast Asia. Pathogenic infection by Phytophthora, however, has become one of major impediments to production. This study identified a pathogenic oomycete isolated from rotted roots of pomelo (Citrus maxima) in Thailand as Phytophthora nicotianae by the internal transcribed spacer ribosomal DNA sequence analysis. Then, we examined the in vitro and in vivo effects of Chaetomium globosum, Chaetomium lucknowense, Chaetomium cupreum and their crude extracts as biological control agents in controlling this P. nicotianae strain. Represent as antagonists in biculture test, the tested Chaetomium species inhibited mycelial growth by 50~56% and parasitized the hyphae, resulting in degradation of P. nicotianae mycelia after 30 days. The crude extracts of these Chaetomium species exhibited antifungal activities against mycelial growth of P. nicotianae, with effective doses of 2.6~101.4 µg/mL. Under greenhouse conditions, application of spores and methanol extracts of these Chaetomium species to pomelo seedlings inoculated with P. nicotianae reduced root rot by 66~71% and increased plant weight by 72~85% compared to that in the control. The method of application of antagonistic spores to control the disease was simple and economical, and it may thus be applicable for large-scale, highly effective biological control of this pathogen.

  7. Basal Root Rot, a new Disease of Teak (Tectona grandis in Malaysia caused by Phellinus noxius

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    Mohd Farid, A.

    2005-01-01

    Full Text Available Basal root rot of teak was first reported from Sabak Bernam, Selangor making this the first report of the disease on teak in Peninsular Malaysia. The fungus found associated with the disease was Phellinus noxious. The disease aggressively killed its host irrespective of the host health status. Bark depression at the root collar which was visible from a distance was the characteristic symptom and the main indicator in identifying the disease in the plantation since above ground symptoms of the canopy could not be differentiated from crowns of healthy trees. However, although above ground symptoms were not easily discernible, the disease was already advanced and the trees mostly beyond treatment; 3.4 % of the trees in the plantation were affected and the disease occurred both on solitary trees and in patches. Below ground, infected trees had rotted root systems, mainly below and around the collar region with brown discolored wood and irregular golden-brown honeycomb-like pockets of fungal hyphae in the wood. Pathogenicity tests showed that the fungus produced symptoms similar to those observed in the plantation and killed two year-old teak plants. The disease killed all the inoculated hosts within three months, irrespective of wounded or unwounded treatments.

  8. Response of cultivars of malanga (Xanthosoma sagittifolium (L. Schott to dry rot

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    Ernesto Espinosa Cuéllar

    2017-01-01

    Full Text Available Malanga (Xanthosoma sagittifolium (L. Schott is an important food crop for over 400 million people in the tropics and subtropics. In order to determine the response of different varieties of malanga Xanthosoma to dry rot, a series of experiments were conducted in the period between 2012 and 2014. The experiments were performed on loamy Soil at the National Research Institute in Tropical Crops and Roots (INIVIT. We determined the incidence and severity of damage, yields and percent of losses at harvest. The lowest values of incidence and the highest total return was achieved in clons ‘INIVIT MX-95-2’, ‘INIVIT MX-95-1’ and ‘INIVIT MX-2007’. Clones of malanga Xanthosoma belonging to the group purple, showed lower incidence that of white and yellow groups. These results will allow selecting cultivars of malanga with greater resistance to the dry rot and with this to diminish the losses in the harvest.

  9. Identification and Pathogenicity of Phytopathogenic Bacteria Associated with Soft Rot Disease of Girasole Tuber

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    Mamdoh Ewis ISMAIL

    2012-02-01

    Full Text Available During 2010-2011 growing seasons six bacterial isolates were separated from naturally infected girasole plants tubers (Helianthus tuberosus L. cv. Balady, showing soft rot, collected from experimental Farm of the Faculty of Agriculture, in El-Minia University, Egypt. Pathogenicity tests showed various virulence for the bacteria isolated from girasole tubers, found pathogenic. These organisms were characterized as rod-shaped, Gram negative, ?-methyl-d-glucoside medium, reducing substances from sucrose, phos, phatase activity and deep cavities on pectate medium. Otherwise, diagnostic tests suggested that the pathogen was Erwinia carotovora ssp. carotovora. The isolated bacteria caused soft rot of wounded tubers when inoculated into tissues. The bacterial isolates were compared for their degree of pathogenicity as well as for differences in specific symptoms, induced in different hosts. The tested isolates could infect several host ranges, such as fruits of apricot, apple, olive, lemon, squash, eggplant and potato tubers, bulbs and garlic and onion cloves, roots radish, carrot, sweet potato and rape. On the other hand, no symptoms were exhibited on pods of bean and cowpea, faba bean, fruits of pepper and tomato. The extracts of experimentally diseased girasole tubers were active in pectinase and also in caboxymethyl cellulose at pH 6 compared to enzyme activities in healthy tissues. Also, the isolated bacteria increased the total and reducing sugars in infected tissues.

  10. Identification of Pathogenic Fusarium spp. Causing Maize Ear Rot and Poten tial Mycotoxin Production in China

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    Canxing Duan

    2016-06-01

    Full Text Available Ear rot is a serious disease that affects maize yield and grain quality worldwide. The mycotoxins are often hazardous to humans and livestock. In samples collected in China between 2009 and 2014, Fusarium verticillioides and F. graminearum species complex were the dominant fungi causing ear rot. According to the TEF-1α gene sequence, F. graminearum species complex in China included three independent species: F. graminearum, F. meridionale, and F. boothii. The key gene FUM1 responsible for the biosynthesis of fumonisin was detected in all 82 F. verticillioides isolates. Among these, 57 isolates mainly produced fumonisin B1, ranging from 2.52 to 18,416.44 µg/g for each gram of dry hyphal weight, in vitro. Three different toxigenic chemotypes were detected among 78 F. graminearum species complex: 15-ADON, NIV and 15-ADON+NIV. Sixty and 16 isolates represented the 15-ADON and NIV chemotypes, respectively; two isolates carried both 15-ADON and NIV-producing segments. All the isolates carrying NIV-specific segment were F. meridionale. The in vitro production of 15-ADON, 3-ADON, DON, and ZEN varied from 5.43 to 81,539.49; 6.04 to 19,590.61; 13.35 to 19,795.33; and 1.77 to 430.24 µg/g of dry hyphal weight, respectively. Altogether, our present data demonstrate potential main mycotoxin production of dominant pathogenic Fusarium in China.

  11. The Effect and Action Mechanisms of Oligochitosan on Control of Stem Dry Rot of Zanthoxylum bungeanum

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    Peiqin Li

    2016-06-01

    Full Text Available In this report, the effects of two oligochitosans, i.e., oligochitosan A (OCHA and oligochitosan B (OCHB, on control of dry rot of Zanthoxylum bungeanum (Z. bungeanum caused by Fusarium sambucinum (F. sambucinum were evaluated. First, both oligochitosans show desirable ability to decrease the infection of F. sambucinum. Second, the oligochitosans strongly inhibit the radial colony and submerged biomass growth of F. sambucinum. Lastly, these oligochitosans are capable of increasing the activities of phenylalanine ammonia lyase (PAL, polyphenoloxidase (PPO and peroxidase (POD significantly, as well as enhancing the content of total phenolics in Z. bungeanum stems. These findings indicate that the protective effects of OCHA and OCHB on Z. bungeanum stems against dry rot may be associated with the direct fungitoxic function against pathogen and the elicitation of biochemical defensive responses in Z. bungeanum stems. The outcome of this report suggests that oligochitosans may serve as a promising natural fungicide to substitute, at least partially, for synthetic fungicides in the disease management of Z. bungeanum.

  12. The Effect and Action Mechanisms of Oligochitosan on Control of Stem Dry Rot of Zanthoxylum bungeanum.

    Science.gov (United States)

    Li, Peiqin; Cao, Zhimin; Wu, Zhou; Wang, Xing; Li, Xiuhong

    2016-06-30

    In this report, the effects of two oligochitosans, i.e., oligochitosan A (OCHA) and oligochitosan B (OCHB), on control of dry rot of Zanthoxylum bungeanum (Z. bungeanum) caused by Fusarium sambucinum (F. sambucinum) were evaluated. First, both oligochitosans show desirable ability to decrease the infection of F. sambucinum. Second, the oligochitosans strongly inhibit the radial colony and submerged biomass growth of F. sambucinum. Lastly, these oligochitosans are capable of increasing the activities of phenylalanine ammonia lyase (PAL), polyphenoloxidase (PPO) and peroxidase (POD) significantly, as well as enhancing the content of total phenolics in Z. bungeanum stems. These findings indicate that the protective effects of OCHA and OCHB on Z. bungeanum stems against dry rot may be associated with the direct fungitoxic function against pathogen and the elicitation of biochemical defensive responses in Z. bungeanum stems. The outcome of this report suggests that oligochitosans may serve as a promising natural fungicide to substitute, at least partially, for synthetic fungicides in the disease management of Z. bungeanum.

  13. Interactions Between the Bud Rot Disease of Oil Palm and Rhynchophorus palmarum (Coleoptera: Curculionidae).

    Science.gov (United States)

    Plata-Rueda, Angelica; Martínez, Luis Carlos; Fernandes, Flávio Lemes; de Sousa Ramalho, Francisco; Zanuncio, José Cola; Serrão, José Eduardo

    2016-04-01

    Rhynchophorus palmarum (L.) causes great losses to the oil palm plantations, and therefore, the spatial and temporal distribution of this insect should be studied, to manage its populations. Insect sampling was done for 2 yr in an oil palm plantation from Colombia. In total, 60 pheromone traps were used in healthy palm trees and infected ones with the Bud Rot disease. On the other hand, developmental stages of this insect were quantified on healthy and diseased palms for two consecutive years. Number of adult R. palmarum per sampling was higher in the plantation with diseased palm trees, 3.85 and 74.7 insects per trap, than in those with healthy ones, 1.91 and 9.48 insects per trap, in the first and second years, respectively. After the integration of pheromone traps, there was a significant increase in the infestation level at all stages of development of the insect. For the first time, the presence of R. palmarum attracted to diseased palms is reported. The association between R. palmarum and the Bud Rot disease is a cause of death and great loss to the oil palm plantations.

  14. Ganoderma Species Associated with Basal Stem Rot Disease of Oil Palm

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    Ling-Chie Wong

    2012-01-01

    Full Text Available Problem statement: Basal Stem Rot disease (BSR is one of the most serious diseases that have been causing major losses in the oil palm industry in Southeast Asia, especially in Malaysia and Indonesia. Several species of Ganoderma have been reported pathogenic to oil palm, however, the diversity and differentiation of the Ganoderma species were not widely studied and the identity of these species are still unclear which may lead to inaccurate and inefficient decision-making in disease management. Approach: In this study, several isolates of Ganoderma were collected in Sarawak, Malaysia and the Multiplex Polymerase Chain Reaction was carried out to differentiate the isolates into species level. This was followed by morphological studies of basidiocarp of the Ganoderma isolates cultivated via artificial cultivation whereby parameters, such as basidiocarp and spore size, color and physical morphology were recorded. Results: Multiplex PCR could be used to differentiate the Ganoderma isolates, however, optimization had to be done to obtain convincing results. Morphology studies of the Ganoderma isolates showed that spore length could be used to distinguish among the Ganoderma species. Conclusion: Three Ganoderma species viz., G. boninense, G. zonatum and G. miniatocinctum are associated with the basal stem rot disease in Sarawak. Further studies on Ganoderma morphological traits is suggested so that immediate identification method can be developed to give guidance in deciding the most suitable way for control measures without any delay, leading to reduced palm deaths and disease control cost, thus, reducing losses in the oil palm industry.

  15. Identification of Pathogenic Fusarium spp. Causing Maize Ear Rot and Potential Mycotoxin Production in China.

    Science.gov (United States)

    Duan, Canxing; Qin, Zihui; Yang, Zhihuan; Li, Weixi; Sun, Suli; Zhu, Zhendong; Wang, Xiaoming

    2016-06-21

    Ear rot is a serious disease that affects maize yield and grain quality worldwide. The mycotoxins are often hazardous to humans and livestock. In samples collected in China between 2009 and 2014, Fusarium verticillioides and F. graminearum species complex were the dominant fungi causing ear rot. According to the TEF-1α gene sequence, F. graminearum species complex in China included three independent species: F. graminearum, F. meridionale, and F. boothii. The key gene FUM1 responsible for the biosynthesis of fumonisin was detected in all 82 F. verticillioides isolates. Among these, 57 isolates mainly produced fumonisin B₁, ranging from 2.52 to 18,416.44 µg/g for each gram of dry hyphal weight, in vitro. Three different toxigenic chemotypes were detected among 78 F. graminearum species complex: 15-ADON, NIV and 15-ADON+NIV. Sixty and 16 isolates represented the 15-ADON and NIV chemotypes, respectively; two isolates carried both 15-ADON and NIV-producing segments. All the isolates carrying NIV-specific segment were F. meridionale. The in vitro production of 15-ADON, 3-ADON, DON, and ZEN varied from 5.43 to 81,539.49; 6.04 to 19,590.61; 13.35 to 19,795.33; and 1.77 to 430.24 µg/g of dry hyphal weight, respectively. Altogether, our present data demonstrate potential main mycotoxin production of dominant pathogenic Fusarium in China.

  16. Use of Cistus aqueous extracts as botanical fungicides in the control of Citrus sour rot.

    Science.gov (United States)

    Karim, H; Boubaker, H; Askarne, L; Cherifi, K; Lakhtar, H; Msanda, F; Boudyach, E H; Ait Ben Aoumar, A

    2017-03-01

    In this work, we investigated the in vitro and in vivo antifungal activity of aqueous extracts obtained from eight Cistus plant species against the development of Geotrichum citri-aurantii, the causal agent of citrus sour rot. The results demonstrate the in vitro effectiveness of all tested Cistus species aqueous extracts against G. citri-aurantii, the inhibition of mycelial growth ranged between 80 and 100%. Furthermore, Cistus aqueous extracts totally inhibited germination of G. citri-aurantii arthrospores at a concentration of 5 mg/mL. Among the plant species tested, C. laurifolius, C. salviifolius, C. monspeliensis, C. ladanifer and C. populifolius displayed the best fungistatic activity since the minimum inhibitory concentration (MIC) was rot was lowered to 8.33% when fruits were treated with aqueous extracts of C. populifolius and C. creticus compared to 100% in the control. Disease severity was lowered to 3.74, 4.47 and 5.13% when fruits were treated with C. creticus, C. ladanifer and C. populifolius aqueous extracts, respectively. Using such these biopesticides in a replacement for synthetic fungicides or in combination with other established disease management practices could help control citrus postharvest decay in a more sustainable and eco-friendly way.

  17. Biotechnological procedures to select white rot fungi for the degradation of PAHs.

    Science.gov (United States)

    Lee, Hwanhwi; Jang, Yeongseon; Choi, Yong-Seok; Kim, Min-Ji; Lee, Jaejung; Lee, Hanbyul; Hong, Joo-Hyun; Lee, Young Min; Kim, Gyu-Hyeok; Kim, Jae-Jin

    2014-02-01

    White rot fungi are essential in forest ecology and are deeply involved in wood decomposition and the biodegradation of various xenobiotics. The fungal ligninolytic enzymes involved in these processes have recently become the focus of much attention for their possible biotechnological applications. Successful bioremediation requires the selection of species with desirable characteristics. In this study, 150 taxonomically and physiologically diverse white rot fungi, including 55 species, were investigated for their performance in a variety of biotechnological procedures, such as dye decolorization, gallic acid reaction, ligninolytic enzymes, and tolerance to four PAHs, phenanthrene, anthracene, fluoranthene, and pyrene. Among these fungi, six isolates showed the highest (>90%) tolerance to both individual PAH and mixed PAHs. And six isolates oxidized gallic acid with dark brown color and they rapidly decolorized RBBR within ten days. These fungi revealed various profiles when evaluated for their biotechnological performance to compare the capability of degradation of PAHs between two groups selected. As the results demonstrated the six best species selected from gallic acid more greatly degraded four PAHs than the other isolates selected via tolerance test. It provided that gallic acid reaction test can be performed to rank the fungi by their ability to degrade the PAHs. Most of all, Peniophora incarnata KUC8836 and Phlebia brevispora KUC9033 significantly degraded the four PAHs and can be considered prime candidates for the degradation of xenobiotic compounds in environmental settings.

  18. Insights Into Triticum aestivum Seedling Root Rot Caused by Fusarium graminearum.

    Science.gov (United States)

    Wang, Qing; Vera Buxa, Stefanie; Furch, Alexandra; Friedt, Wolfgang; Gottwald, Sven

    2015-12-01

    Fusarium graminearum is one of the most common and potent fungal pathogens of wheat (Triticum aestivum), known for causing devastating spike infections and grain yield damage. F. graminearum is a typical soil-borne pathogen that builds up during consecutive cereal cropping. Speculation on systemic colonization of cereals by F. graminearum root infection have long existed but have not been proven. We have assessed the Fusarium root rot disease macroscopically in a diverse set of 12 wheat genotypes and microscopically in a comparative study of two genotypes with diverging responses. Here, we show a 'new' aspect of the F. graminearum life cycle, i.e., the head blight fungus uses a unique root-infection strategy with an initial stage typical for root pathogens and a later stage typical for spike infection. Root colonization negatively affects seedling development and leads to systemic plant invasion by tissue-adapted fungal strategies. Another major outcome is the identification of partial resistance to root rot. Disease severity assessments and histological examinations both demonstrated three distinct disease phases that, however, proceeded differently in resistant and susceptible genotypes. Soil-borne inoculum and root infection are considered significant components of the F. graminearum life cycle with important implications for the development of new strategies of resistance breeding and disease control.

  19. ROOT ROT OF CHILLI INCITED BY Sclerotium rolfsii Sacc. AND ITS MANAGEMENT- A REVIEW

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    V.Madhuri

    2014-02-01

    Full Text Available Chilli (Capsicum annum L. belongs to the family solanaceae is mainly cultivated for its vegetable green fruits and dry chilli as the spice. It is believed to be originated from South America. It is a rich source of Vitamin C, A and B. Chilli is valued for pungency which is imparted by an alkaloid, Capsaicin and the red pigments (Capsanthin, Capsorubin and Capxanthin. Chillies are widely used as spice, condiment, culinary, supplement, medicine, vegetable and are ornamental plants too. It is an important food flavouring ingredientfor flavouring many vegetarian and non-vegetarian food products. In view of its multifarious uses, the demand for chillies has been on the increase world over. In India it is an important cash crop, which is grown for the domestic market and for export. In India, chillies are grown in almost all states of the country and the major growing states in terms of production are Andhra Pradesh, Karnataka, Orissa, Maharashtra, West Bengal, Rajasthan and Tamil Nadu. There are several varieties of chilli cultivated in India. The most popular among these are, Sannam, LC334, Byadagi, Wonderhot, Jwala etc. The crop suffers from many diseases like damping off, anthracnose or fruit rot or dieback, wilt, leaf spots and powdery mildew. Among the fungal diseases, root rot of chilli caused by Sclerotium rolfsii has attained the economic importance. In recent years, this disease is causing the economic losses in chillies crop (Kalmesh and Gurjar 2001.

  20. Biological treatment of paper pulp effluents: the application of ligninolytic white rot-fungi

    Energy Technology Data Exchange (ETDEWEB)

    Martin, C; Fajardo, S.; Manzanares, P.

    1996-07-01

    Biological treatments using white-rot fungi, based in their ability to degrade lignin, can constitute an interesting approach to remove colour and toxic compounds usually contained in paper pulp effluents due to the presence of recalcitrant lignin derived molecules. In this work, strains A-137 and A-136 (IJFM collection, CIB-CSIC, Madrid) of Trameles versicolor, a ligninolytic white-rot fungus that have been frequently reported in relation to degradation of lignin, have been used for decolorisation studies of the straw alkaline-pulping effluent from SAICA factory (Zaragoza, Spain). From results obtained it can be concluded that decolorisation percentages about 80% can be obtained in 4-6 days (for maximum initial colour effluent between 12,000 and 15,000 CU) and total phenolics content can be reduced in about 90%. Mn-dependent peroxidase (about 20 IU/I) and high values of laccase activities (up to 700 IU/I) were produced, what may be of great interest to set up ligninolytic enzymes production processes for industrial uses. (Author) 19 refs.

  1. Randomly Distributed Fabry-Pérot-type Metal Nanowire Resonators and Their Lasing Action

    Science.gov (United States)

    Kwon, Kyungmok; Jung, Youngho; Kim, Minkyung; Shim, Jaeho; Yu, Kyoungsik

    2016-04-01

    Optical feedback mechanisms are often obtained from well-defined resonator structures fabricated by top-down processes. Here, we demonstrate that two-dimensional networks of metallic nanowires dispersed on the semiconductor slab can provide strong in-plane optical feedback and, thus, form randomly-distributed Fabry-Pérot-type resonators that can achieve multi- or single-mode lasing action in the near infrared wavelengths. Albeit with their subwavelength-scale cross-sections and uncontrolled inter-nanowire distances, a cluster of nearly parallel metal nanowires acts as an effective in-situ reflector for the semiconductor-metal slab waveguide modes for coherent optical feedback in the lateral direction. Fabry-Pérot type resonance can be readily developed by a pair of such clusters coincidentally formed in the solution-processed random nanowire network. Our low-cost and large-area approach for opportunistic random cavity formation would open a new pathway for integrated planar light sources for low-coherence imaging and sensing applications.

  2. Antifungal Activity of Chitosan on Fusarium sulphureum in Relation to Dry Rot of Potato Tuber

    Institute of Scientific and Technical Information of China (English)

    LI Yong-cai; SUN Xiao-juan; BI Yang; GE Yong-hong; WANG Yi

    2009-01-01

    The antifungal activity of chitosan on Fusarium sulphureum in relation to the inhibitory effect on dry rot of potato tuber was investigated.The results showed spore germination and mycelial growth of F.sulphureura were inhibited by ehitosan treatment and the inhibitory effect was highly correlated with ehitosan concentration used in this study.Morphological changes such as intertwisting hyphal,distortion,and swelling with excessive branching were observed by scanning electron microscopy (SEM) observation.Transmission electron microscopy (TEM) observation further indicated the ultrastructural alterations of hyphae.These changes included abnormal distribution of eytoplasma,non-membraneous inclusion bodies assembling in cytoplasm,considerable thickening of the hyphal cellular walls,and very frequent septation with malformed septa.Application of chitosan at higher concentration caused serious damage to fungal hyphae,including cellular membrane disorganisation,cell wall disruption,and breaking of inner cytoplast.New hyphae (daughter hyphae) inside the collapsed hyphal cells was often detected in the cytoplasm of ehitosan-treated hyphae.In vivo tests showed that chitosan treatment at 0.5 or 1% effectively controlled the dry rot of potato tuber inoculated with a spore suspension ofF.sulphureum.However,the chitosan treatment at 1% caused phytotoxicity to potato tuber.This study suggests that the use of ehitosan could be a promising handling as a natural fungicide to partially substitute for the synthetic fungicides in potato tuber.

  3. Transformation of low rank coal by Phanerochaete chrysosporium and other wood-rot fungi

    Energy Technology Data Exchange (ETDEWEB)

    Ralph, J.P.; Catcheside, D.E.A. [Flinders University of South Australia, Bedford Park, SA (Australia). School of Biological Sciences

    1997-11-01

    There is evidence that the organic fraction of low rank coal (LRC) is chemically transformed by wood-rot fungi. These fungi and the oxidases they secrete have variously been shown to solubilise, polymerise, depolymerise and decolourise macromolecules derived from LRC. The white-rot fungus, Phanerochaete chrysosporium, is able to depolymerise and decolourise alkali-soluble acid-precipitable LRC macromolecules (AS-coal), converting them to a form not recoverable by alkali washing. Transformation of AS-coal is enhanced in N-limiting media under hyperbaric oxygen and is believed to be due, at least in part, to oxidation by manganese peroxidase (MnP) and lignin peroxidase (LiP). The precise role these enzymes play is not yet clear but enzyme and mutant studies show AS-coal can be both polymerised and depolymerised by MnP and its mimetic Mn(III), without change to its absorbance at 400 nm. LiP decolourises AS-coal without apparently altering its molecular mass. Culture filtrates containing MnP and LiP acting on methylated AS-coal yield an array of low molecular mass moieties. Coal-derived monometers have not been recovered from cultures of P. chrysosporium, consistent with them being taken-up by the fungal cells. This suggests that cellular transformations may permit the diverse catabolic products derived from LRC to be converted to specific low molecular mass compounds in usable yield. 43 refs., 2 figs.

  4. Lignin degradation by a white-rot fungus lacking lignin peroxidase and manganese peroxidase

    Energy Technology Data Exchange (ETDEWEB)

    Eggert, C.B.; Eriksson, K.E.L. [Univ. of Georgia, Athens, GA (United States)

    1996-10-01

    Phanerochaete chrysosporium has been the organism of choice for studies of lignin degradation and much of this work has focused on two phenol oxidases, lignin peroxidase (LiP) and manganese peroxidase (MnP), secreted by the fungus under ligninolytic conditions. However, many white-rot fungi, including a number of aggressive lignin degraders, seem to operate without expressing LiP activity. Laccase is another phenol oxidase that white-rot fungi often produce. However, the role played by laccase in lignin degradation has remained obscured since its low redox potential appeared to make it incapable of oxidizing non-phenolic lignin constituents. We have identified, Pychnoporus cinnabarinus lacking both LiP and MnP, but a high producer of laccase, to degrade lignin as efficiently as UP producing fungi. We have found that P. cinnabarinus, to overcome the redox potential barrier for laccase, produces a mediator for oxidation of non-phenolic lignin structures. This is the first description of how laccase may be used in a biological system for the degradation of lignin.

  5. Ecofriendly Fire Retardant and Rot Resistance Finishing of Jute Fabric Using Tin and Boron Based Compound

    Science.gov (United States)

    Samanta, Ashis Kumar; Bagchi, Arindam

    2017-02-01

    Treatment with sodium stannate followed by treatment with boric acid imparts jute fabric wash fast fire resistance property as indicated by its Limiting Oxygen Index (LOI) value and 45° inclined flammability test results. The treatment was carried out by impregnation of sodium stannate followed by impregnation with an aqueous solution of boric acid and drying. Application of sodium stannate (20%) and boric acid (20%) treatment on jute fabric showed balanced flame retardancy property (LOI value 34) with some loss in fabric tenacity (loss of tenacity is 14.5%). Treated fabric retained good fire retardant property after three consecutive washing. Treated fabric also possessed good rot resistance property as indicated by soil burial test and strength retention after 21 days soil burial was found to be 65%. It is found that of sodium stannate and boric acid combination by double bath process form a synergistic durable fire-retardant as well as rot resistant when impregnated on jute material, which is considerably greater than the use of either sodium stannate or boric acid alone. TGA, FTIR and SEM analysis are also reported to support the results and reaction mechanism.

  6. Fiber-optic Fabry-Pérot strain sensor based on graded-index multimode fiber

    Institute of Scientific and Technical Information of China (English)

    Tian Zhao; Yuan Gong; Yunjiang Rao; Yu Wu; Zengling Ran; Huijuan Wu

    2011-01-01

    By using a graded-index multimode fiber (GI-MMF) with a relatively flat index profile and high refractive index of the fiber core, a microextrinsic fiber-optic Fabry-Pérot interferometric (MEFPI) strain sensor is fabricated through chemical etching and fusion splicing. Higher reflectance of the microcavity is obtained due to the less-curved inner wall in the center of the fiber core after etching and higher index contrast between the GI-MMF core and air. The maximum reflection of the sensor is enhanced 12 dB than that obtained by etching of the Er- or B-doped fibers. High fringe contrast of 22 dB is obtained. The strain and temperature responses of the MEFPI sensors are investigated in this experiment. Good linearity and high sensitivity axe achieved, with wavelength-strain and wavelength-temperature sensitivities of 7.82 pm/μεand 5.01 pm/℃, respectively.%@@ By using a graded-index multimode fiber (GI-MMF) with a relatively flat index profile and high refractive index of the fiber core, a microextrinsic fiber-optic Fabry-Pérot interferometric (MEFPI) strain sensor is fabricated through chemical etching and fusion splicing.Higher reflectance of the microcavity is obtained due to the less-curved inner wall in the center of the fiber core after etching and higher index contrast between the GI-MMF core and air.

  7. Investigating the efficacy of Bacillus subtilis SM21 on controlling Rhizopus rot in peach fruit.

    Science.gov (United States)

    Wang, Xiaoli; Wang, Jing; Jin, Peng; Zheng, Yonghua

    2013-06-17

    The efficacy of Bacillus subtilis SM21 on controlling Rhizopus rot caused by Rhizopus stolonifer in postharvest peach fruit and the possible mechanisms were investigated. The results indicated B. subtilis SM21 treatment reduced lesion diameter and disease incidence by 37.2% and 26.7% on the 2nd day of inoculation compared with the control. The in vitro test showed significant inhibitory effect of B. subtilis SM21 on mycelial growth of R. stolonifer with an inhibition rate of 48.9%. B. subtilis SM21 treatment significantly enhanced activities of chitinase and β-1,3-glucanase, and promoted accumulation of H2O2. Total phenolic content and 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical-scavenging activity were also increased by this treatment. Transcription of seven defense related genes was much stronger in fruit treated with B. subtilis SM21 or those both treated with B. subtilis SM21 and inoculated with R. stolonifer compared with fruit inoculated with R. stolonifer alone. These results suggest that B. subtilis SM21 can effectively inhibit Rhizopus rot caused by R. stolonifer in postharvest peach fruit, possibly by directly inhibiting growth of the pathogen, and indirectly inducing disease resistance in the fruit.

  8. Identification and Pathogenicity of Phytopathogenic Bacteria Associated with Soft Rot Disease of Girasole Tuber

    Directory of Open Access Journals (Sweden)

    Mamdoh Ewis ISMAIL

    2012-02-01

    Full Text Available During 2010-2011 growing seasons six bacterial isolates were separated from naturally infected girasole plants tubers (Helianthus tuberosus L. cv. �Balady�, showing soft rot, collected from experimental Farm of the Faculty of Agriculture, in El-Minia University, Egypt. Pathogenicity tests showed various virulence for the bacteria isolated from girasole tubers, found pathogenic. These organisms were characterized as rod-shaped, Gram negative, ?-methyl-d-glucoside medium, reducing substances from sucrose, phos, phatase activity and deep cavities on pectate medium. Otherwise, diagnostic tests suggested that the pathogen was Erwinia carotovora ssp. carotovora. The isolated bacteria caused soft rot of wounded tubers when inoculated into tissues. The bacterial isolates were compared for their degree of pathogenicity as well as for differences in specific symptoms, induced in different hosts. The tested isolates could infect several host ranges, such as fruits of apricot, apple, olive, lemon, squash, eggplant and potato tubers, bulbs and garlic and onion cloves, roots radish, carrot, sweet potato and rape. On the other hand, no symptoms were exhibited on pods of bean and cowpea, faba bean, fruits of pepper and tomato. The extracts of experimentally diseased girasole tubers were active in pectinase and also in caboxymethyl cellulose at pH 6 compared to enzyme activities in healthy tissues. Also, the isolated bacteria increased the total and reducing sugars in infected tissues.

  9. Control of Postharvest Bacterial Soft Rot by Gamma Irradiation and its Potential Modes of Action

    Directory of Open Access Journals (Sweden)

    Rae-Dong Jeong

    2016-04-01

    Full Text Available Gamma irradiation was evaluated for its in vitro and in vivo antibacterial activity against a postharvest bacterial pathogen, Erwinia carotovora subsp. carotovora (Ecc. Gamma irradiation in a bacteria cell suspension resulted in a dramatic reduction of the viable counts as well as an increase in the amounts of DNA and protein released from the cells. Gamma irradiation showed complete inactivation of Ecc, especially at a dose of 0.6 kGy. In addition, scanning electron microscopy of irradiated cells revealed severe damage on the surface of most bacterial cells. Along with the morphological changes of cells by gamma irradiation, it also affected the membrane integrity in a dose-dependent manner. The mechanisms by which the gamma irradiation decreased the bacterial soft rot can be directly associated with the disruption of the cell membrane of the bacterial pathogen, along with DNA fragmentation, results in dose-dependent cell inactivation. These findings suggest that gamma irradiation has potential as an antibacterial approach to reduce the severity of the soft rot of paprika.

  10. Voltage adjusting characteristics in terahertz transmission through Fabry-Pérot-based metamaterials

    Directory of Open Access Journals (Sweden)

    Jun Luo

    2015-10-01

    Full Text Available Metallic electric split-ring resonators (SRRs with featured size in micrometer scale, which are connected by thin metal wires, are patterned to form a periodically distributed planar array. The arrayed metallic SRRs are fabricated on an n-doped gallium arsenide (n-GaAs layer grown directly over a semi-insulating gallium arsenide (SI-GaAs wafer. The patterned metal microstructures and n-GaAs layer construct a Schottky diode, which can support an external voltage applied to modify the device properties. The developed architectures present typical functional metamaterial characters, and thus is proposed to reveal voltage adjusting characteristics in the transmission of terahertz waves at normal incidence. We also demonstrate the terahertz transmission characteristics of the voltage controlled Fabry-Pérot-based metamaterial device, which is composed of arrayed metallic SRRs. To date, many metamaterials developed in earlier works have been used to regulate the transmission amplitude or phase at specific frequencies in terahertz wavelength range, which are mainly dominated by the inductance-capacitance (LC resonance mechanism. However, in our work, the external voltage controlled metamaterial device is developed, and the extraordinary transmission regulation characteristics based on both the Fabry-Pérot (FP resonance and relatively weak surface plasmon polariton (SPP resonance in 0.025-1.5 THz range, are presented. Our research therefore shows a potential application of the dual-mode-resonance-based metamaterial for improving terahertz transmission regulation.

  11. Phenolic characterization and antioxidant capacity of ten autochthonous vines grown in southern Italy / Caratterizzazione fenolica e potere antiossidante di dieci vitigni autoctoni allevati nel Sud Italia

    Directory of Open Access Journals (Sweden)

    Milella Rosa Anna

    2016-01-01

    phenolic profile of ten autochthonous vines grown in two different areas of South Italy. By spectrophotometric analysis it has been possible to analyze quali-quantitive characteristics of such substances, while by ORAC method (Oxygen Radical Absorbance Capacity we have measured, in vitro, the antioxidant action. The oenological potential has been evaluated, in relation to polyphenols content, of ten Vitis Vinifera varieties belonging to autochthonous vines of Basilicata, grown in espalier and tent in two areas: in the vineyard of Val d'Agri (PZ, in Basilicata, and in South-East Bari area, in Rutigliano (Ba, in Puglia. The ten varieties belonging to Southern Italy autochthonous vines include four black grapes and six white grapes. Data obtained on total polyphenols content, view of the considerable variability encountered, allow us to affirm that the polyphenolic ripening of wine grapes, thus the reaching of the maximum level, is very influenced by the “terroir”, defined as the cultivation area or environment, by season trend, by cultivation techniques and by the different vines nutritional conditions. The same holds true for the antioxidant activity of the 10 wine grapes varieties of this study, since it is closely related to the polyphenol

  12. Direct ethanol production from starch, wheat bran and rice straw by the white rot fungus Trametes hirsuta

    NARCIS (Netherlands)

    Okamoto, Kenji; Nitta, Yasuyuki; Maekawa, Nitaro; Yanase, Hideshi

    2011-01-01

    The white rot fungus Trametes hirsuta produced ethanol from a variety of hexoses: glucose, mannose, cellobiose and maltose, with yields of 0.49. 0.48, 0.47 and 0.47 g/g of ethanol per sugar utilized, respectively. In addition, this fungus showed relatively favorable xylose consumption and ethanol pr

  13. Degradation of Bunker C Fuel Oil by White-Rot Fungi in Sawdust Cultures Suggests Potential Applications in Bioremediation.

    Science.gov (United States)

    Young, Darcy; Rice, James; Martin, Rachael; Lindquist, Erika; Lipzen, Anna; Grigoriev, Igor; Hibbett, David

    2015-01-01

    Fungal lignocellulolytic enzymes are promising agents for oxidizing pollutants. This study investigated degradation of Number 6 "Bunker C" fuel oil compounds by the white-rot fungi Irpex lacteus, Trichaptum biforme, Phlebia radiata, Trametes versicolor, and Pleurotus ostreatus (Basidiomycota, Agaricomycetes). Averaging across all studied species, 98.1%, 48.6%, and 76.4% of the initial Bunker C C10 alkane, C14 alkane, and phenanthrene, respectively were degraded after 180 days of fungal growth on pine media. This study also investigated whether Bunker C oil induces changes in gene expression in the white-rot fungus Punctularia strigosozonata, for which a complete reference genome is available. After 20 days of growth, a monokaryon P. strigosozonata strain degraded 99% of the initial C10 alkane in both pine and aspen media but did not affect the amounts of the C14 alkane or phenanthrene. Differential gene expression analysis identified 119 genes with ≥ log2(2-fold) greater expression in one or more treatment comparisons. Six genes were significantly upregulated in media containing oil; these genes included three enzymes with potential roles in xenobiotic biotransformation. Carbohydrate metabolism genes showing differential expression significantly accumulated transcripts on aspen vs. pine substrates, perhaps reflecting white-rot adaptations to growth on hardwood substrates. The mechanisms by which P. strigosozonata may degrade complex oil compounds remain obscure, but degradation results of the 180-day cultures suggest that diverse white-rot fungi have promise for bioremediation of petroleum fuels.

  14. Registration of DT99-16864 soybean germplasm line with moderate resistance to charcoal rot [Macrophomina phaseolina (Tassi) Goid

    Science.gov (United States)

    Charcoal rot, caused by Macrophomina phaseolina (Tassi) Goidanich, is a disease that is a world-wide problem in soybean production for which no highly resistant cultivars are currently available. Soybean germplasm line DT99-16864, a maturity group V line, was developed by the U.S. Department of Ag...

  15. Effects of soil type, management type and soil amendments on the survival of the potato brown rot bacterium Ralstonia solanacearum

    NARCIS (Netherlands)

    Messiha, N.A.S.; Bruggen, van A.H.C.; Franz, E.; Janse, J.D.; Schoeman-Weerdesteijn, M.E.; Termorshuizen, A.J.; Diepeningen, van A.D.

    2009-01-01

    Potato brown rot disease (Ralstonia solanacearum) is a serious economic problem in Egypt, partly due to an European Union requirement that potatoes for export to the EU should be grown in so-called pest free area's (PFA's), where fields are tested and infested fields are put under quarantine measure

  16. Reduction of Fusarium rot and maintenance of fruit quality in melon using eco-friendly hot water treatment.

    Science.gov (United States)

    Sui, Yuan; Droby, Samir; Zhang, Danfeng; Wang, Wenjie; Liu, Yongsheng

    2014-12-01

    Significant losses in harvested fruit can be directly attributable to decay fungi and quality deterioration. Hot water treatment (HWT) has been demonstrated to be an effective and economic environment-friendly approach for managing postharvest decay and maintaining fruit quality. In this study, the effects of HWT (45 °C for 10, 15, 20, and 25 min) on in vitro growth of Fusarium oxysporum, in vivo Fusarium rot, and natural decay of melon were investigated. HWT inhibited spore germination and germ tube elongation of F. oxysporum. Protein impairment and ATP consumption triggered by HWT contributed to the inhibitory effect. Results of in vivo studies showed that HWT effectively controlled Fusarium rot and natural decay of melon. Correspondingly, HWT induced a significant increase in content of total phenolic compounds and lignin of melon. These findings indicate that the effects of HWT on Fusarium rot may be associated with the direct fungal inhibition and the elicitation of defense responses in fruit. Importantly, HWT used in this study had beneficial effects on fruit quality as well. HWT may represent an effective non-chemical approach for management of postharvest Fusarium rot.

  17. Isolation and functional characterization of Sporothrix schenckii ROT2, the encoding gene for the endoplasmic reticulum glucosidase II.

    Science.gov (United States)

    Robledo-Ortiz, Claudia I; Flores-Carreón, Arturo; Hernández-Cervantes, Arturo; Álvarez-Vargas, Aurelio; Lee, Keunsook K; Díaz-Jiménez, Diana F; Munro, Carol A; Cano-Canchola, Carmen; Mora-Montes, Héctor M

    2012-08-01

    The N-linked glycosylation is a ubiquitous protein modification in eukaryotic cells. During the N-linked glycan synthesis, the precursor Glc(3)Man(9)GlcNAc(2) is processed by endoplasmic reticulum (ER) glucosidases I, II and α1,2-mannosidase, before transporting to the Golgi complex for further structure modifications. In fungi of medical relevance, as Candida albicans and Aspergillus, it is well known that ER glycosidases are important for cell fitness, cell wall organization, virulence, and interaction with the immune system. Despite this, little is known about these enzymes in Sporothrix schenckii, the causative agent of human sporotrichosis. This limited knowledge is due in part to the lack of a genome sequence of this organism. In this work we used degenerate primers and inverse PCR approaches to isolate the open reading frame of S. schenckii ROT2, the encoding gene for α subunit of ER glucosidase II. This S. schenckii gene complemented a Saccharomyces cerevisiae rot2Δ mutant; however, when expressed in a C. albicans rot2Δ mutant, S. schenckii Rot2 partially increased the levels of α-glucosidase activity, but failed to restore the N-linked glycosylation defect associated to the mutation. To our knowledge, this is the first report where a gene involved in protein N-linked glycosylation is isolated from S. schenckii.

  18. The Salmonella transcriptome in lettuce and cilantro soft rot reveals a niche overlap with the animal host intestine

    Science.gov (United States)

    Fresh vegetables have been recurrently associated with salmonellosis outbreaks and Salmonella contamination of retail produce has been correlated positively with the presence of soft rot disease. We observed that Salmonella enterica Typhimurium SL1344 grows to 50-fold greater populations in the pres...

  19. Occurrence and Control of Corn Stalk Rot%玉米茎腐病的发生与防治

    Institute of Scientific and Technical Information of China (English)

    李英; 钟文

    2015-01-01

    根据侵染源的不同,玉米茎腐病分为真菌性茎腐病和细菌性茎腐病。在分别介绍了这2种病害的病原特征、侵染循环、发生规律、危害症状后,指出生产上应采取农业防治、物理防治和化学防治相结合的综合防治措施。为有效识别与防治玉米茎腐病,提高玉米的产量和品质提供了理论依据。%According to different infec-tion source, corn stalk rot could be di-vided into fungal stalk rot and bacterial stalk rot.After introducing the pathogenic characteristics, infection cycle, occur-rence regulation and damage symptom of these two diseases respectively, the com-prehensive prevention measures were put forward, including agricultural control, physical control and chemical control. The study provided theoretical basis for effectively recognizing and controlling corn stalk rot,and improving yield and quality of corn.

  20. 玉米穗粒腐病的研究进展%Research Progress on Ear Rot in Maize

    Institute of Scientific and Technical Information of China (English)

    张艳; 谭静

    2014-01-01

    Maize ear rot is a serious disease rampant in all maize growing areas in China,which is caused by various fungal pathogens and lead to great threat to maize production.The distribution and damage of maize ear rot,its causal pathogens,disease cycle,and the genetic studies of maize resistance to ear rot were introduced.In addition,future research in breeding maize resistant cultivars to ear rot was also prospected.%玉米穗粒腐是我国各个玉米产区都有发生的一种危害性很大的真菌性病害,已对我国玉米生产造成了很大的威胁。对玉米穗粒腐的分布与危害、病原菌、病害循环和抗性遗传研究等方面进行详细的介绍,并对玉米穗粒腐病的抗病育种进行展望。

  1. Genome Sequence of the Pectobacterium atrosepticum Strain CFBP6276, Causing Blackleg and Soft Rot Diseases on Potato Plants and Tubers.

    Science.gov (United States)

    Kwasiborski, Anthony; Mondy, Samuel; Beury-Cirou, Amélie; Faure, Denis

    2013-06-20

    Pectobacterium atrosepticum strain CFBP6276 is a pectinolytic enterobacterium causing blackleg and soft rot of the stem and tuber of Solanum tuberosum. Its virulence is under the control of quorum sensing, with N-acylhomoserine lactones as communication signals. Here, we report the genome sequence of P. atrosepticum strain CFBP6276.

  2. Genome Sequence of the Pectobacterium atrosepticum Strain CFBP6276, Causing Blackleg and Soft Rot Diseases on Potato Plants and Tubers

    OpenAIRE

    Kwasiborski, Anthony; Mondy, Samuel; Beury-Cirou, Amélie; Faure, Denis

    2013-01-01

    Pectobacterium atrosepticum strain CFBP6276 is a pectinolytic enterobacterium causing blackleg and soft rot of the stem and tuber of Solanum tuberosum. Its virulence is under the control of quorum sensing, with N-acylhomoserine lactones as communication signals. Here, we report the genome sequence of P. atrosepticum strain CFBP6276.

  3. Fate of Clavibacter michiganensis ssp. sepedonicus, the causal organism of bacterial ring rot in potato, in weeds and field crops.

    NARCIS (Netherlands)

    Wolf, van der J.M.; Beckhoven, van J.R.C.M.; Hukkanen, A.; Karjalainen, R.; Muller, P.

    2005-01-01

    Crops and weeds were tested for their ability to host Clavibacter michiganensis ssp. sepedonicus (Cms), the causal agent of bacterial ring rot in potato. Ten crops grown in rotation with potato in Europe, namely maize, wheat, barley, oat, bush bean, broad bean, rape, pea and onion and five cultivars

  4. The influence of formulation on Trichoderma biological activity and frosty pod rot disease management in Theobroma cacao

    Science.gov (United States)

    Frosty pod rot (FPR), caused by Moniliophthora roreri is responsible for significant losses in Theobroma cacao. Due to the limited options for FPR management, biological control methods using Trichoderma are being studied. Combinations of three formulations and two Trichoderma isolates were studied ...

  5. Effect of cultural practices and fungicide treatments on the severity of Phytophthora root rot of blueberries grown in Mississippi

    Science.gov (United States)

    Phytophthora root rot is an important disease of blueberries, especially those grown in areas with poor drainage. Reliable cultural and chemical management strategies are needed for control of this disease. Two studies were conducted to evaluate the effects of cultural practices and fungicide treat...

  6. Fungicide rotation schemes for managing Phytophthora fruit rot of watermelon across Southeastern United States (NC, SC, and GA)

    Science.gov (United States)

    Phytophthora capsici has been documented as a pathogen on a wide variety of vegetable crops in the family Solanaceae, Cucurbitaceae, Fabaceae, and plants belonging to 23 other families. Phytophthora fruit rot of watermelons caused by P. capsici is particularly severe in southeastern U.S where optima...

  7. Gene-for-gene relationships between strawberry and the causal agent of red stele root rot, Phytophthora fragariae var. fragariae.

    NARCIS (Netherlands)

    Weg, van de W.E.

    1997-01-01

    Red stele (red core) root rot is the major soil-borne disease of strawberries (Fragaria spp.) in many areas with cool, moist soil conditions. It is caused by the soil-borne fungus Phytophthora fragariae var. fragariae. Red stele is a quarantine disease in Europe with a zero tolerance for commercial

  8. Degradation of Bunker C Fuel Oil by White-Rot Fungi in Sawdust Cultures Suggests Potential Applications in Bioremediation.

    Directory of Open Access Journals (Sweden)

    Darcy Young

    Full Text Available Fungal lignocellulolytic enzymes are promising agents for oxidizing pollutants. This study investigated degradation of Number 6 "Bunker C" fuel oil compounds by the white-rot fungi Irpex lacteus, Trichaptum biforme, Phlebia radiata, Trametes versicolor, and Pleurotus ostreatus (Basidiomycota, Agaricomycetes. Averaging across all studied species, 98.1%, 48.6%, and 76.4% of the initial Bunker C C10 alkane, C14 alkane, and phenanthrene, respectively were degraded after 180 days of fungal growth on pine media. This study also investigated whether Bunker C oil induces changes in gene expression in the white-rot fungus Punctularia strigosozonata, for which a complete reference genome is available. After 20 days of growth, a monokaryon P. strigosozonata strain degraded 99% of the initial C10 alkane in both pine and aspen media but did not affect the amounts of the C14 alkane or phenanthrene. Differential gene expression analysis identified 119 genes with ≥ log2(2-fold greater expression in one or more treatment comparisons. Six genes were significantly upregulated in media containing oil; these genes included three enzymes with potential roles in xenobiotic biotransformation. Carbohydrate metabolism genes showing differential expression significantly accumulated transcripts on aspen vs. pine substrates, perhaps reflecting white-rot adaptations to growth on hardwood substrates. The mechanisms by which P. strigosozonata may degrade complex oil compounds remain obscure, but degradation results of the 180-day cultures suggest that diverse white-rot fungi have promise for bioremediation of petroleum fuels.

  9. Wilt, crown, and root rot of common rose mallow (Hibiscus moscheutos) caused by a novel Fusarium sp.

    Science.gov (United States)

    A new crown and root rot disease of landscape plantings of the malvaceous ornamental common rose mallow (Hibiscus moscheutos) was first detected in Washington State in 2012. The main objectives of this study were to identify the causal agent using multilocus molecular phylogenetics and to complete K...

  10. Conduciveness of different soilless growing media to Pythium root and crown rot of cucumber under near-commercial conditions

    NARCIS (Netherlands)

    Gaag, van der D.J.; Wever, G.

    2005-01-01

    Substrates made from rockwool, coir dust, pumice and perlite were compared for conduciveness to Pythium root and crown rot in cucumber under near-commercial conditions. Rockwool slabs of 7 cm height were more conducive to the Pythium disease than coir dust slabs, pumice or perlite under these condit

  11. Effect of Tween 80 and beta-cyclodextrin on degradation of decabromodiphenyl ether (BDE-209) by White rot fungi.

    Science.gov (United States)

    Zhou, Juan; Jiang, Weiying; Ding, Juan; Zhang, Xingding; Gao, Shixiang

    2007-12-01

    The environmental safety of decabromodiphenyl ether (BDE-209), a widely used flame retardant, has been the topic of controversial discussions during the past several years. Degradation of BDE-209 into lower brominated diphenyl ether congeners, exhibiting a higher bioaccumulation potential, has been a critical issue. White rot fungi are known to degrade a wide variety of recalcitrant pollutants. In this work, white rot fungi were used to degrade BDE-209 in liquid culture medium, and the effects of Tween 80 and beta-cyclodextrin on BDE-209 degradation by white rot fungi were evaluated. On the basis of these results, it appears that BDE-209 could be degraded by white rot fungi, and Tween 80 and beta-cyclodextrin can both increase the biodegradation. The best result in Tween 80 experiments was obtained at a Tween 80 concentration of 500mgl(-1) within 10d, which showed 96.5% (w/w) BDE-209 transformed. Tween 80 at a high concentration will restrain the fungal growth and the degradation of BDE-209. However, beta-cyclodextrin had positive effects both on the BDE-209 degradation and the fungal growth.

  12. Aroma compounds and characteristics of noble-rot wines of Chardonnay grapes artificially botrytized in the vineyard.

    Science.gov (United States)

    Wang, Xing-Jie; Tao, Yong-Sheng; Wu, Yun; An, Rong-Yan; Yue, Zhuo-Ya

    2017-07-01

    Aroma characteristics and their impact volatile components of noble-rot wines elaborated from artificial botrytized Chardonnay grapes, obtained by spraying Botrytis cinerea suspension in Yuquan vineyard, Ningxia, China, were explored in this work. Dry white wine made from normal-harvested grapes and sweet wine produced from delay-harvested grapes were compared. Wine aromas were analysed by trained sensory panelists, and aroma compounds were determined by SPME-GC-MS. Results indicated that esters, fatty acids, thiols, lactones, volatile phenols and 2-nonanone increased markedly in noble-rot wines. In addition to typical aromas of noble-rot wines, artificial noble-rot wines were found to contain significant cream and dry apricot attributes. Partial Least-Squares Regression models of aroma characteristics against aroma components revealed that non-fermentative odorants were the primary contributor to dry apricot attribute, especially, thiols, C13-norisoprenoids, lactones, terpenols and phenolic acid derivatives, while cream attribute was dependent on both fermentative and non-fermentative volatile components.

  13. Detection of soft rot Erwinia spp. on seed potatoes: conductimetry versus dilution plating, PCR and serological assays

    NARCIS (Netherlands)

    Fraaije, B.A.; Appels, M.; Boer, de S.H.; Vuurde, van J.W.L.; Bulk, van den R.W.

    1997-01-01

    Automated conductance measurements in polypectate medium were used for the detection of pathogenic soft rot Erwinia spp. in potato peel extracts. The detection threshold for Erwinia carotovora subsp. atroseptica (Eca) in inoculated peel extracts was ca. 104 colony forming units (cfu) ml-1 when sampl

  14. The potential of white-rot fungi to degrade phorbol esters of Jatropha curcas L. seed cake

    NARCIS (Netherlands)

    Barros, de C.R.M.; Ferreira, L.M.M.; Nunes, F.M.; Bezerra, R.M.F.; Dias, A.A.; Guedes, C.; Cone, J.W.; Marques, G.S.M.; Rodrigues, M.A.M.

    2011-01-01

    The potential of solid-state cultivation, with three white-rot fungi (Bjerkandera adusta, Ganoderma resinaceum and Phlebia rufa), to decrease phorbol esters concentration of Jatropha curcas L. was evaluated in this study. Incubation was conducted in 250¿mL Erlenmeyer flasks without agitation at 28°C

  15. Effect of enzyme extracts isolated from white-rot fungi on chemical composition and in vitro digestibility of wheat straw

    NARCIS (Netherlands)

    Rodrigues, M.A.M.; Pinto, P.; Bezerra, R.M.F.; Dias, A.A.; Guedes, C.M.; Cone, J.W.

    2008-01-01

    A series of in vitro experiments were completed to evaluate the potential of enzyme extracts, obtained from the white-rot fungi Trametes versicolor (TV1, TV2), Bjerkandera adusta (BA) and Fomes fomentarius (FF), to increase degradation of cell wall components of wheat straw. The studies were conduct

  16. Conductrimetric detection of Pseudomonas syringae pathovar pisi in pea seeds and soft rot Erwinia spp. on potato tubers.

    NARCIS (Netherlands)

    Fraaije, B.A.

    1996-01-01

    Pea bacterial blight and potato blackleg are diseases caused by Pseudomonas syringae pv. pisi ( Psp ) and soft rot Erwinia spp., respectively. The primary source of inoculum for these bacteria is contaminated plant propagation material, i.e. pea seeds and potato tubers. One of the best ways to contr

  17. SNP discovery and QTL mapping of Sclerotinia basal stalk rot resistance in sunflower using genotyping-by-sequencing (GBS)

    Science.gov (United States)

    Basal stalk rot (BSR) caused by the ascomycete fungus Sclerotinia sclerotiorum (Lib.) de Bary is a serious disease of sunflower (Helianthus annuus L.) in the cool and humid production areas of the world. Quantitative trait loci (QTL) for BSR resistance were identified in a sunflower recombinant inbr...

  18. First report of Colletotrichum godetiae causing bitter rot on ‘Golden Delicious’ apples in the Netherlands

    NARCIS (Netherlands)

    Wenneker, M.; Pham, K.T.K.; Lemmers, M.E.C.; Boer, de F.A.; Lans, van der A.M.; Leeuwen, van P.J.; Hollinger, T.C.

    2016-01-01

    Apple (Malus domestica) is an important fruit crop in the Netherlands, with a total production of 418,000 tons in 2011. Symptoms of apple bitter rot were observed on ‘Golden Delicious’ apples in the Netherlands in July 2013 after 9 months of storage in a packing house at controlled atmosphere. Lesio

  19. First report of fusarium avenaceum causing wet core rot of ‘elstar’ apples in the Netherlands

    NARCIS (Netherlands)

    Wenneker, M.; Pham, K.T.K.; Lemmers, M.E.C.; Boer, de Fred; Lans, van der Arie; Leeuwen, van Paul; Hollinger, T.C.; Thomma, B.P.H.J.

    2016-01-01

    Apple (Malus domestica) is an important fruit crop in the Netherlands. ‘Elstar’, the main cultivar, occupies 40% of the apple production area. Symptoms of apple wet core rot were observed on Elstar in January to March 2013 after 4 to 6 months’ storage in different packing houses at controlled atm

  20. White rot of garlic and onion (Causal agent, Sclerotium cepivorum): A status report from the Pacific Northwest

    Science.gov (United States)

    There is evidence from literature, state department of agriculture documents, and recent diagnoses that Sclerotium cepivorum, causal agent of white rot of garlic and onion, is spreading and/or becoming more established in the Pacific Northwest. Previously documented distributions are summarized, an...

  1. The prevalence of different strains of Rhizoctonia solani associated with Rhizoctonia crown and root rot symptoms in Ontario sugarbeet fields

    Science.gov (United States)

    Rhizoctonia crown and root rot (RCRR) [Rhizoctonia solani Kühn] is an important disease of sugarbeets in southwestern Ontario, Canada. A survey of commercial sugarbeet fields was completed in 2010 and 2011 to determine the range of R. solani anastomosis groups (AGs) and inter-specific groups (ISGs) ...

  2. Antioxidative and antihypertensive activities of pig meat before and after cooking and in vitro gastrointestinal digestion: Comparison between Italian autochthonous pig Suino Nero Lucano and a modern crossbred pig.

    Science.gov (United States)

    Simonetti, Amalia; Gambacorta, Emilio; Perna, Annamaria

    2016-12-01

    The aim of this study was to evaluate and compare antioxidative and antihypertensive activities of Longissimus dorsi muscle from Suino Nero Lucano (SNL) and a modern crossbred (CG) pigs, before and after cooking and in vitro gastrointestinal digestion. Pig meat showed antioxidative and antihypertensive activities, heat treatment decreased the thiols content but at the same time increased angiotensin I-converting enzyme (ACE) inhibitory activity, and in vitro gastrointestinal digestion enhanced the biological activity of meat. Autochthonous SNL meat showed a higher nutraceutical quality compared to CG meat, highlighting a greater potential beneficial physiological effect on human health. The results of this study indicate that the pig meat, in particular autochthonous pig meat, may be considered a functional food since it is a good source of antioxidative and antihypertensive peptides.

  3. Foot rot and other foot diseases of goat and sheep in the semiarid region of northeastern Brazil

    Directory of Open Access Journals (Sweden)

    Gildeni M.N Aguiar

    2011-10-01

    Full Text Available This paper reports the occurrence and epidemiology of outbreaks of foot rot and other foot diseases in goats and sheep in the semiarid region of Paraíba, northeastern Brazil. Four farms were inspected for the presence of foot lesion in sheep and goats and for environmental conditions, general hygiene, pastures, and disease control measures. The prevalence of foot lesions was 19.41% (170/876 in sheep and 17.99% (52/289 in goats, ranging between 5.77% and 33.85% in different farms. Foot rot was the most common disease, affecting 12.1% of the animals examined (141/1165, but with significantly higher (p<0.05 prevalence in sheep (13.69% than in goats (7.27%. The frequency of malignant foot rot was also significantly lower (p<0.05 in goats (9.53% than in the sheep (40.83%. On one farm, Dorper sheep showed significantly higher (p<0.05 prevalence of foot rot (17.5% than Santa Inês sheep (6.79%, and the number of digits affected was also higher in the former. Dichelobacter nodosus and Fusobacterium necrophorum were isolated from cases of foot rot. White line disease was found in 3.95% of the animals, sole ulcers in 1.29%, foot abscess in 1.03% and hoof overgrowth in 0.5%. The high rainfall at the time of occurrence, grazing in wetlands, clay soils with poor drainage, presence of numerous stony grounds, closure of the flocks in pens at night, and introduction of affected animals were considered predisposing factors for the occurrence of foot diseases.

  4. Pseudomonas cichorii as the causal agent of midrib rot, an emerging disease of greenhouse-grown butterhead lettuce in Flanders.

    Science.gov (United States)

    Cottyn, Bart; Heylen, Kim; Heyrman, Jeroen; Vanhouteghem, Katrien; Pauwelyn, Ellen; Bleyaert, Peter; Van Vaerenbergh, Johan; Höfte, Monica; De Vos, Paul; Maes, Martine

    2009-05-01

    Bacterial midrib rot of greenhouse-grown butterhead lettuce (Lactuca sativa L. var. capitata) is an emerging disease in Flanders (Belgium) and fluorescent pseudomonads are suspected to play an important role in the disease. Isolations from infected lettuces, collected from 14 commercial greenhouses in Flanders, yielded 149 isolates that were characterized polyphasically, which included morphological characteristics, pigmentation, pathogenicity tests by both injection and spraying of lettuce, LOPAT characteristics, FAME analysis, BOX-PCR fingerprinting, 16S rRNA and rpoB gene sequencing, as well as DNA-DNA hybridization. Ninety-eight isolates (66%) exhibited a fluorescent pigmentation and were associated with the genus Pseudomonas. Fifty-five of them induced an HR+ (hypersensitive reaction in tobacco leaves) response. The other 43 fluorescent isolates were most probably saprophytic bacteria and about half of them were able to cause rot on potato tuber slices. BOX-PCR genomic fingerprinting was used to assess the genetic diversity of the Pseudomonas midrib rot isolates. The delineated BOX-PCR patterns matched quite well with Pseudomonas morphotypes defined on the basis of colony appearance and variation in fluorescent pigmentation. 16S rRNA and rpoB gene sequence analyses allowed most of the fluorescent isolates to be allocated to Pseudomonas, and they belonged to either the Pseudomonas fluorescens group, Pseudomonas putida group, or the Pseudomonas cichorii/syringae group. In particular, the isolates allocated to this latter group constituted the vast majority of HR+ isolates and were identified as P. cichorii by DNA-DNA hybridization. They were demonstrated by spray-inoculation tests on greenhouse-grown lettuce to induce the midrib rot disease and could be re-isolated from lesions of inoculated plants. Four HR+ non-fluorescent isolates associated with one sample that showed an atypical midrib rot were identified as Dickeya sp.

  5. Enhancement of tolerance to soft rot disease in the transgenic Chinese cabbage (Brassica rapa L. ssp. pekinensis) inbred line, Kenshin.

    Science.gov (United States)

    Vanjildorj, Enkhchimeg; Song, Seo Young; Yang, Zhi Hong; Choi, Jae Eul; Noh, Yoo Sun; Park, Suhyoung; Lim, Woo Jin; Cho, Kye Man; Yun, Han Dae; Lim, Yong Pyo

    2009-10-01

    We developed a transgenic Chinese cabbage (Brassica rapa L. ssp. pekinensis) inbred line, Kenshin, with high tolerance to soft rot disease. Tolerance was conferred by expression of N-acyl-homoserine lactonase (AHL-lactonase) in Chinese cabbage through an efficient Agrobacterium-mediated transformation method. To synthesize and express the AHL-lactonase in Chinese cabbage, the plant was transformed with the aii gene (AHL-lactonase gene from Bacillus sp. GH02) fused to the PinII signal peptide (protease inhibitor II from potato). Five transgenic lines were selected by growth on hygromycin-containing medium (3.7% transformation efficiency). Southern blot analysis showed that the transgene was stably integrated into the genome. Among these five transgenic lines, single copy number integrations were observed in four lines and a double copy number integration was observed in one transgenic line. Northern blot analysis confirmed that pinIISP-aii fusion gene was expressed in all the transgenic lines. Soft rot disease tolerance was evaluated at tissue and seedling stage. Transgenic plants showed a significantly enhanced tolerance (2-3-fold) to soft rot disease compared to wild-type plants. Thus, expression of the fusion gene pinIISP-aii reduces susceptibility to soft rot disease in Chinese cabbage. We conclude that the recombinant AHL-lactonase, encoded by aii, can effectively quench bacterial quorum-sensing and prevent bacterial population density-dependent infections. To the best of our knowledge, the present study is the first to demonstrate the transformation of Chinese cabbage inbred line Kenshin, and the first to describe the effect of the fusion gene pinIISP-aii on enhancement of soft rot disease tolerance.

  6. Prevalence of Erwinia soft rot affecting cut foliage, Dracaena sanderiana ornamental industry and solution towards its management.

    Science.gov (United States)

    Kayalvily, Thio Desiya; Jegathambigai, V; Karunarathne, M D S D; Svinningen, Arne; Mikunthan, G

    2012-01-01

    The study was carried out under net house conditions at Green Farms Ltd, Marawila to determine the occurrence and severity of Erwinia soft rot disease in Dracaena sanderiana plants and to formulate the possible control measures. Field experiment was carried out to manage the soft rot disease in D. sanderiana plants. Three different soil treatments with vermicompost, cow dung and poultry manure were tested to manage the disease and plots without application were kept as control. Percent disease incidence, disease reduction and growth parameters were recorded and data were statistically analyzed. Higher percentage of disease reduction was observed in vermicompost (80%) treated plots than those with cow dung (60%) and poultry manure treated. Sprinkler application of water was found favorable to spread soft rot disease and watering through horse pope had lessened the disease incidence significantly. Moreover plant height, shoot and root biomass, number of leaves per plant, leaf length and leaf width were significantly high in vermicompost media. Weeding, removal of diseased leaves and plants, and avoiding sprinkler irrigation were helpful to reduce the disease spread from plant to plant. Vermicompost is the best substrate for suppression of the disease and promoting the growth of plant. Among the different water management practices tested to reduce the disease severity of Erwinia soft rot disease in D. sanderiana plants, water irrigated through the horse pipe was effective compare to sprinkler application. In-vitro experiment conducted to manage the Erwinia soft rot disease by using bio-agent, Pseudomonas fluorescens was found effective to reduce the growth of Erwinia under in-vitro conditions.

  7. Assessment of Injuries Caused by Anastrepha fraterculus (Wied.) (Diptera: Tephritidae) on the Incidence of Bunch Rot Diseases in Table Grape.

    Science.gov (United States)

    Machota, R; Bortoli, L C; Cavalcanti, F R; Botton, M; Grützmacher, A D

    2016-08-01

    Anastrepha fraterculus (Wied.) is the main insect pest of table grapes (Vitis vinifera) in the Southern Region of Brazil. In this study, we aimed to investigate the effect of fruit puncturing by adult females and larval infestation by A. fraterculus on the occurrence of bunch rot disease in the grape (cultivar "Itália") by evaluating grapes (a) punctured for oviposition by females of A. fraterculus, sterilized in laboratory with novaluron (40 mg L(-1)) and further spray-inoculated separately with Botrytis cinerea (1 × 10(6) conidia mL(-1)), Glomerella cingulata (1 × 10(6) conidia mL(-1)), and bacteria and yeast that cause sour rot (1 × 10(5) cells mL(-1)), (b) grapes punctured for oviposition by non-sterilized females with pathogen spraying, (c) grapes with mechanical wounds and pathogen spraying, (d) grapes with no wounds and with pathogen spraying, (e) grapes punctured for oviposition by A. fraterculus chemically sterilized in laboratory with novaluron, (f) grapes punctured for oviposition by A. fraterculus non-sterilized in laboratory with novaluron, (g) grapes with mechanical wounds, and (h) grapes with no sterilization or pathogen spraying. Our data indicated that the mechanical and oviposition wounds caused by A. fraterculus increased the percentage of grapes infected by B. cinerea, G. cingulata, and microorganisms of acid rot. The grape puncturing by A. fraterculus and the mechanical wound allows the penetration of B. cinerea and microorganisms leading to acid rot. We conclude that the fruit fly A. fraterculus may facilitate phytopathogens penetration leading to bunch rots in the table grape Itália.

  8. Application and validation of autochthonous Lactobacillus plantarum starter cultures for controlled malolactic fermentation and its influence on the aromatic profile of cherry wines.

    Science.gov (United States)

    Sun, Shu Yang; Gong, Han Sheng; Liu, Wen Li; Jin, Cheng Wu

    2016-05-01

    Lactic acid bacteria (LAB) used for malolactic fermentation (MLF) has a great effect on the production and quality of cherry wines. The present study used an autochthonous Lb. plantarum strain of SGJ-24 which was isolated from spontaneous MLF cherry wines and selected by its best MLF performance and tolerance, to investigate its effect on the kinetic of vinification and on chemical and volatile characteristics of Rainer and May Duck cherry wines, in comparison with a commercial Oenococcus oeni strain of 31 MBR. Monitoring of MLF was carried out by measuring cell viability and malic acid metabolism, and results showed that for both cherry varieties, SGJ-24 can significantly minimize MLF duration. After fermentation, wine samples were chemically characterized and analyzed for volatile profiles. Results demonstrated that no negative impact on the analytical parameters has been found, and a general increase of volatile esters and terpenes was observed when SGJ-24 was involved. Sensory analysis revealed that the global aromatic intensity was enhanced by the introduction of SGJ-24. All these data suggested that the application of Lb. plantarum strain of SGJ-24 as a worthwhile alternative LAB species for Rainer and May Duck cherry winemaking.

  9. Iranian wheat flours from rural and industrial mills: Exploitation of the chemical and technology features, and selection of autochthonous sourdough starters for making breads.

    Science.gov (United States)

    Pontonio, Erica; Nionelli, Luana; Curiel, José Antonio; Sadeghi, Alireza; Di Cagno, Raffaella; Gobbetti, Marco; Rizzello, Carlo Giuseppe

    2015-05-01

    This study aimed at describing the main chemical and technology features of eight Iranian wheat flours collected from industrial and artisanal mills. Their suitability for bread making was investigated using autochthonous sourdough starters. Chemical analyses showed high concentration of fibers and ash, and technology aptitude for making breads. As shown through 2-DE analyses, gliadin and glutenin subunits were abundant and varied among the flours. According to the back slopping procedure, type I sourdoughs were prepared from Iranian flours, and lactic acid bacteria were typed and identified. Strains of Pediococcus pentosaceus, Weissella cibaria, Weissella confusa, and Leuconostoc citreum were the most abundant. Based on the kinetics of growth and acidification, quotient of fermentation and concentration of total free amino acids, lactic acid bacteria were selected and used as sourdough mixed starters for bread making. Compared to spontaneous fermentation, sourdoughs fermented with selected and mixed starters favored the increase of the concentrations of organic acids and total free amino acids, the most suitable quotient of fermentation, and the most intense phytase and antioxidant activities. Although the high concentration of fibers, selected and mixed starters improved the textural features of the breads. This study might had contribute to the exploitation of the potential of Iranian wheat flours and to extend the use of sourdough, showing positive technology, nutritional and, probably, economic repercussions.

  10. Microbiological quality and safety of raw milk and soft cheese and detection of autochthonous lactic acid bacteria with antagonistic activity against Listeria monocytogenes, Salmonella Spp., and Staphylococcus aureus.

    Science.gov (United States)

    Ortolani, Maria Beatriz Tassinari; Yamazi, Anderson Keizo; Moraes, Paula Mendonça; Viçosa, Gabriela Nogueira; Nero, Luís Augusto

    2010-02-01

    This study aimed to characterize the microbiological quality and safety of raw milk and soft cheese, verifying possible associations between microbial populations, and the detection of lactic acid bacteria (LAB) with antagonistic activity against foodborne pathogens. Raw milk (n = 36) and soft cheese (n = 18) samples were collected and submitted for the analysis of mesophilic aerobes, total coliforms, Escherichia coli, LAB, coagulase-positive Staphylococcus (CPS), Listeria monocytogenes, and Salmonella spp. In all, 389 LAB isolates were randomly selected and submitted for antagonistic tests against L. monocytogenes, St. aureus, Salmonella Typhimurium, and Lactobacillus sakei. The samples presented high counts of mesophilic aerobes, total coliforms, and LAB, and also high and significant correlation indices between these populations. Low levels of CPS and E. coli were observed, as well as an absence of Salmonella spp. and L. monocytogenes. A substantial portion of the analyzed samples presented LAB cultures with antagonistic activity, but not against Salmonella Typhimurium. The obtained results indicate the antimicrobial potential of the autochthonous microbiota of raw milk and soft cheese. Despite the spoilage potential, the LAB present in the studied food products can be isolated and properly characterized as antagonistic cultures, to be used in bioconservation studies for pathogen control in foods.

  11. Effect of autochthonous starter cultures isolated from Siahmazgi cheese on physicochemical, microbiological and volatile compound profiles and sensorial attributes of sucuk, a Turkish dry-fermented sausage.

    Science.gov (United States)

    Kargozari, Mina; Moini, Sohrab; Akhondzadeh Basti, Afshin; Emam-Djomeh, Zahra; Gandomi, Hassan; Revilla Martin, Isabel; Ghasemlou, Mehran; Carbonell-Barrachina, Angel A

    2014-05-01

    The effect of adding autochthonous starter cultures isolated from Siahmazgi cheese, on the physicochemical parameters and microbial counts of sucuk was investigated during the ripening period. SPME-GC/MS was used in volatile compound analysis and a trained group of panelists carried out sensory analysis of the final product. After preliminary screening, three strains of Lactobacillus plantarum, which possess desirable technological properties, were used to prepare three starter cultures: LBP7, LBP10 and LBP14. The addition of LBP7 and LBP14 starter cultures had a significant effect (Pactivity during the ripening of sausages was not affected by the various starters. The texture profiles of all sausages were similar except for LBP10, which showed lower hardness and gumminess during ripening. Under the conditions of the study, volatile compounds were mainly from spices, and no marked differences were found among inoculated sausages. However, sensory evaluation revealed that most of the sensory attributes were scored higher for inoculated sausages than for the control ones. Therefore, LBP7 and LBP14 could be promising candidates for inclusion as starter cultures for the manufacture of sucuk.

  12. Helminth communities of the autochthonous mustelids Mustela lutreola and M. putorius and the introduced Mustela vison in south-western France.

    Science.gov (United States)

    Torres, J; Miquel, J; Fournier, P; Fournier-Chambrillon, C; Liberge, M; Fons, R; Feliu, C

    2008-12-01

    This study presents the first comprehensive helminthological data on three sympatric riparian mustelids (the European mink Mustela lutreola, the polecat M. putorius and the American mink M. vison) in south-western France. One hundred and twenty-four specimens (45 M. lutreola, 37 M. putorius and 42 M. vison) from eight French departments were analysed. Globally, 15 helminth species were detected: Troglotrema acutum, Pseudamphistomum truncatum, Euryhelmis squamula, Euparyphium melis and Ascocotyle sp. (Trematoda), Taenia tenuicollis (Cestoda), Eucoleus aerophilus, Pearsonema plica, Aonchotheca putorii, Strongyloides mustelorum, Molineus patens, Crenosoma melesi, Filaroides martis and Skrjabingylus nasicola (Nematoda) and larval stages of Centrorhynchus species (Acanthocephala). The autochthonous European mink harboured the highest species richness (13 species) followed by the polecat with 11 species. The introduced American mink presented the most depauperate helminth community (nine species). The prevalence and worm burden of most of the helminths found in M. putorius and M. lutreola were also higher than those of M. vison. Some characteristics of their helminth communities were compared to relatively nearby populations (Spain) and other very distant populations (Belarus). This comparison emphasized M. patens as the most frequent parasite in all of the analysed mustelid populations. It was possible to conclude that the invasive M. vison contributes to the maintenance of the life cycle of the pathogenic T. acutum and S. nasicola helminths, with possible implications for the conservation of the endangered European mink.

  13. Phenolic Compounds, Antioxidant Activity, and Other Characteristics of Extra Virgin Olive Oils from Italian Autochthonous Varieties Tonda di Villacidro, Tonda di Cagliari, Semidana, and Bosana

    Directory of Open Access Journals (Sweden)

    Carlo I. G. Tuberoso

    2016-01-01

    Full Text Available Extra virgin olive oils (EVOOs from the fruits of Italian autochthonous varieties Tonda di Villacidro, Tonda di Cagliari, Semidana, and Bosana were investigated to promote their quality aspects. All the analyzed EVOOs showed low values of acidity (≤0.45% and of peroxide value (≤6.22 mEq O2/kg. There were no relevant differences in fatty acids and triacylglycerols composition among the four EVOOs. Tocopherols determined by HPLC-FL revealed that Bosana oil was characterized by the highest α-tocopherol level (213.3 ± 55.4 mg/kg. Chlorophylls, carotenoids, and total phenol (TP contents as well as antioxidant activity (FRAP, DPPH∙, and ABTS∙+ assays of the oils hydrophilic fractions (HFs were assessed by spectrophotometric methods. Some differences concerning the antioxidant activity and the TP content were observed: Bosana oil HF activity was the most pronounced (1.17 ± 0.37 mmol TEAC/kg and it contained the highest TPs amount (335.20 ± 121.34 mg/kg. HFs phenolic composition was determined by HPLC-DAD. The main identified phenols were secoiridoids, dominating in Bosana oil, such as decarboxymethyl ligstroside aglycone (p-HPEA-EDA, 35.8 ± 19.9 mg/kg and oleuropein aglycone (3,4-HPEA-EA up to 84.7 mg/kg. In summary, all the four varieties showed good characteristics for the use as quality EVOO.

  14. Effect of bioaugmented inoculation on microbiota dynamics during solid-state fermentation of Daqu starter using autochthonous of Bacillus, Pediococcus, Wickerhamomyces and Saccharomycopsis.

    Science.gov (United States)

    Li, Pan; Lin, Weifeng; Liu, Xiong; Wang, Xiaowen; Gan, Xing; Luo, Lixin; Lin, Wei-Tie

    2017-02-01

    Daqu, a traditional fermentation starter that is used for Chinese liquor and vinegar production, is still manufactured through a traditional spontaneous solid-state fermentation process with no selected microorganisms are intentionally inoculated. The aim of this work was to analyze the microbiota dynamics during the solid-state fermentation process of Daqu using a traditional and bioaugmented inoculation with autochthonous of Bacillus, Pediococcus, Saccharomycopsis and Wickerhamomyces at an industrial scale. Highly similar dynamics of physicochemical parameters, enzymatic activities and microbial communities were observed during the traditional and bioaugmented solid-state fermentation processes. Both in the two cases, groups of Streptophyta, Rickettsiales and Xanthomonadales only dominated the first two days, but Bacillales and Eurotiales became predominant members after 2 and 10 days fermentation, respectively. Phylotypes of Enterobacteriales, Lactobacillales, Saccharomycetales and Mucorales dominated the whole fermentation process. No significant difference (P > 0.05) in microbial structure was observed between the traditional and bioaugmented fermentation processes. However, slightly higher microbial richness was found during the bioaugmented fermentation process after 10 days fermentation. Our results reinforced the microbiota dynamic stability during the solid-state fermentation process of Daqu, and might aid in controlling the traditional Daqu manufacturing process.

  15. Application of Trichoderma harzianum in the control of basal stem rot of oil palms

    Institute of Scientific and Technical Information of China (English)

    Abdullah F; Ilias G N M

    2004-01-01

    @@ The palm, Elaeis guineensis, has its origins in Africa but is planted on a commercial basis in several countries Statistics for 2002 showed that in the lead for land mass under oil palm cultivation is Indonesia, at 3,769,000 ha, followed by Malaysia at 3,376,000 ha; however, the world' s leading producer of palm oil is still Malaysia, since the 1970's. Both countries are predicted to produce 82.4%of the world's palm oil production by the year 2005. However, the palm is susceptible to basal stem rot, a devastating disease which results in direct loss of field stands and to which no effective chemical control is yet available. Caused by Ganoderma boninense, infected palms appear symptomless, at the first sign of disease, at least 50 % of the internal trunk tissue stem would have actually rotted. This study investigated the efficacy of Trichoderma harzianum (isolate FA 1132) as a biological control agent, using 6-month old oil palm seedlings as models and the experiment performed in a greenhouse at 29-30 ℃ ambient conditions. The plants were artificially infected with G. boninense and a conidial suspension of 1 × 109-9 × 109 spores/mL was applied as a soil drench at 1L/plant every 2 weeks for 20weeks. The parameters examined were efficacy of the biocontrol agent and the effect of Trichodermaincorporated mulch in addition to the soil drench. Efficacy was assessed in terms disease severity index (DSI) where a higher percentage indicates a higher severity. Results showed that infection first sets in on untreated plants at week 12 and got worse progressively. The completely untreated plants were all infected and the DSI at 20 weeks after infection (wa. i.) was 92. 5%. Plants given only a Trichoderma -infused food base supplement without conidial suspension gave a DSI of 70% whereas those given a conidial soil drench without supplemental food base gave a DSI of 85% at 20 w.a.i.Infected plants given a conidial treatment together with a food base supplement gave a DSI

  16. Imported and autochthonous cases in the dynamics of dengue epidemics in Brazil Casos importados y autóctonos en la dinámica de epidemias de dengue en Brasil Casos importados e autóctones na dinâmica da epidemia de dengue no Brasil

    OpenAIRE

    Nicolas Degallier; Charly Favier; Jean-Philippe Boulanger; Christophe Menkes

    2009-01-01

    OBJECTIVE: To estimate the basic reproduction number (R0) of dengue fever including both imported and autochthonous cases. METHODS: The study was conducted based on epidemiological data of the 2003 dengue epidemic in Brasília, Brazil. The basic reproduction number is estimated from the epidemic curve, fitting linearly the increase of initial cases. Aiming at simulating an epidemic with both autochthonous and imported cases, a "susceptible-infectious-resistant" compartmental model was designed...

  17. A Simple Method for Assessing Severity of Common Root Rot on Barley

    Directory of Open Access Journals (Sweden)

    Mohammad Imad Eddin Arabi

    2013-12-01

    Full Text Available Common root rot caused by Cochliobolus sativus is a serious disease of barley. A simple and reliable method for assessing this disease would enhance our capacity in identifying resistance sources and developing resistant barley cultivars. In searching for such a method, a conidial suspension of C. sativus was dropped onto sterilized elongated subcrown internodes and incubated in sandwich filter paper using polyethylene transparent envelopes. Initial disease symptoms were easily detected after 48h of inoculation. Highly significant correlation coefficients were found in each experiment (A, B and C between sandwich filter paper and seedling assays, indicating that this testing procedure was reliable. The method presented facilitates a rapid pre-selection under uniform conditions which is of importance from a breeder’s point of view.

  18. Decoloration of Amaranth by the white-rot fungus Trametes versicolor. Part I. Statistical analysis.

    Science.gov (United States)

    Gavril, Mihaela; Hodson, Peter V; McLellan, Jim

    2007-02-01

    The white-rot fungus Trametes versicolor decolorized the mono-azo-substituted naphthalenic dye Amaranth. The relationship between the amount of enzymes present in the system and the efficiency of the decoloration process was investigated. The two responses used to quantify the process of decoloration (i.e., initial decoloration rate, v0, and the percent concentration of dye decolorized in 1 h, %c) were correlated with the amount of three enzymes considered for the study (lignin peroxidase, manganese peroxidase, and laccase) and analyzed through stepwise regression analysis (forward, backward, and mixed). The results of the correlation analysis and those of the regression analysis indicated that lignin peroxidase is the enzyme having the greatest influence on the two responses.

  19. Cytochrome P450 monooxygenases involved in anthracene metabolism by the white-rot basidiomycete Phanerochaete chrysosporium.

    Science.gov (United States)

    Chigu, Nomathemba Loice; Hirosue, Sinji; Nakamura, Chie; Teramoto, Hiroshi; Ichinose, Hirofumi; Wariishi, Hiroyuki

    2010-08-01

    Cytochrome P450 monooxygenases (P450s) involved in anthracene metabolism by the white-rot basidiomycete Phanerochaete chrysosporium were identified by comprehensive screening of both catalytic potentials and transcriptomic profiling. Functional screening of P. chrysosporium P450s (PcCYPs) revealed that 14 PcCYP species catalyze stepwise conversion of anthracene to anthraquinone via intermediate formation of anthrone. Moreover, transcriptomic profiling explored using a complementary DNA microarray system demonstrated that 12 PcCYPs are up-regulated in response to exogenous addition of anthracene. Among the up-regulated PcCYPs, five species showed catalytic activity against anthracene. Based upon both catalytic and transcriptional properties, these five species are most likely to play major roles in anthracene metabolic processes in vivo. Thus, the combination of functional screening and a microarray system may provide a novel strategy for obtaining a thorough understanding of the catalytic functions and biological impacts of PcCYPs.

  20. Spencermartinsiella silvicola sp. nov., a yeast species isolated from rotting wood.

    Science.gov (United States)

    Morais, Camila G; Lara, Carla A; Oliveira, Evelyn S; Peter, Gábor; Dlauchy, Dénes; Rosa, Carlos A

    2015-11-10

    Three strains of a new xylanase-producing yeast species were isolated from rotting wood samples collected in the Atlantic Rain Forest of Brazil. The sequences of the ITS region and D1/D2 domains of the large subunit of the rRNA gene showed that this new yeast species belongs to the genus Spencermartinsiella, and its closest relatives among the recognized species are S. europaea and S. ligniputridi. The novel species Spencermartinsiella silvicola sp. nov. is proposed to accommodate these isolates. The type strain is UFMG-CM-Y274T (= CBS 13490T). The MycoBank number is MB 813053. In addition, Candida cellulosicola is reassigned to the genus Spencermartinsiella as a new combination.

  1. A realistic quantum capacitance model for quantum Hall edge state based Fabry-Pérot interferometers

    Science.gov (United States)

    Kilicoglu, O.; Eksi, D.; Siddiki, A.

    2017-01-01

    In this work, the classical and the quantum capacitances are calculated for a Fabry-Pérot interferometer operating in the integer quantized Hall regime. We first consider a rotationally symmetric electrostatic confinement potential and obtain the widths and the spatial distribution of the insulating (incompressible) circular strips using a charge density profile stemming from self-consistent calculations. Modelling the electrical circuit of capacitors composed of metallic gates and incompressible/compressible strips, we investigate the conditions to observe Aharonov-Bohm (quantum mechanical phase dependent) and Coulomb blockade (capacitive coupling dependent) effects reflected in conductance oscillations. In a last step, we solve the Schrödinger and the Poisson equations self-consistently in a numerical manner taking into account realistic experimental geometries. We find that, describing the conductance oscillations either by Aharanov-Bohm or Coulomb blockade strongly depends on sample properties also other than size, therefore, determining the origin of these oscillations requires further experimental and theoretical investigation.

  2. Plant photonics: application of optical coherence tomography to monitor defects and rots in onion

    Science.gov (United States)

    Meglinski, I. V.; Buranachai, C.; Terry, L. A.

    2010-04-01

    The incidence of physiological and/or pathological defects in many fresh produce types is still unacceptably high and accounts for a large proportion of waste. With increasing interest in food security their remains strong demand in developing reliable and cost effective technologies for non-destructive screening of internal defects and rots, these being deemed unacceptable by consumers. It is well recognized that the internal defects and structure of turbid scattering media can be effectively visualized by using optical coherence tomography (OCT). In the present study, the high spatial resolution and advantages of OCT have been demonstrated for imaging the skins and outer laminae (concentric tissue layers) of intact whole onion bulbs with a view to non-invasively visualizing potential incidence/severity of internal defects.

  3. Overexpression of citrus polygalacturonase-inhibiting protein in citrus black rot pathogen Alternaria citri.

    Science.gov (United States)

    Katoh, Hiroshi; Nalumpang, Sarunya; Yamamoto, Hiroyuki; Akimitsu, Kazuya

    2007-05-01

    The rough lemon (Citrus jambhiri) gene encoding polygalacturonase-inhibiting protein (RlemPGIPA) was overexpressed in the pathogenic fungus Alternaria citri. The overexpression mutant AcOPI6 retained the ability to utilize pectin as a sole carbon source, and the overexpression of polygalacturonase-inhibiting protein did not have any effect on the growth of AcOPI6 in potato dextrose and pectin medium. The pathogenicity of AcOPI6 to cause a black rot symptom in citrus fruits was also unchanged. Polygalacturonase-inhibiting protein was secreted together with endopolygalacturonase into culture filtrates of AcOPI6, and oligogalacturonides were digested from polygalacturonic acid by both proteins in the culture filtrates. The reaction mixture containing oligogalacturonides possessed activity for induction of defense-related gene, RlemLOX, in rough lemon leaves.

  4. Incidence of butt rot in a tree species experiment in northern Denmark

    DEFF Research Database (Denmark)

    Ronnberg, J; Vollbrecht, G.; Thomsen, Iben Margrete

    1999-01-01

    The susceptibility to infections by Heterobasidion annosum (Fr.) Bref. was examined in a 28-year-old tree species experiment in northern Jutland, Denmark. Silver fir (Abies alba Mill.), Caucasian fir (Abies nordmanniana (Stev.) Spach), grand fir (Abies grandis (Dougl) Lindl.), noble fir (Abies...... procera Rehd.), Japanese larch (Larix kaempferi (Lamb.) Carr.), Norway spruce (Picea abies (L.) Karst.), Sitka spruce (Picea sitchensis (Bong.) Carr.), and Douglas fir (Pseudotsuga menziesii (Mirb.) Franco) were planted after shelterwood felling of a mountain pine (Pinus uncinata Mill. ex Mirb.) stand...... that had been infected by H. annosum. Douglas fir and noble fir showed the greatest mortality due to H. annosum during the first 5 years after planting. At first thinning the highest incidences of butt rot were recorded in noble fir, Japanese larch and Sitka spruce, with 44%, 43% and 36% of the thinned...

  5. Detecting RAPD Markers Linked to Ripe Rot Resistance Genes in Chinese Wild Vitis

    Institute of Scientific and Technical Information of China (English)

    WANG Yue-jin; XU Yan; ZHANG Jian-xia; ZHOU Peng; WAN Yi-zhen

    2002-01-01

    With F1 individuals of the cross combination 88-110 of 83-4-96 ( V. quinquangularis Rehd. )× Muscat Rose ( V. vinifera L. ), the RAPD marker OPC15-1300 linked to ripe rot ( Gloeosporium fruetigenum Berk. ) resistance genes in Chinese wild Vitis was gained using bulked segregation analysis(BSA). And it was found that OPC15-1300 could be hereditary from the resistant parent (83-4-96) after the marker was tested in 50 F1 plants of the cross combination 88-110, 32 accessions of 8 Chinese wild Vitis species and 14cultivars of V. vinifera L. Also, it has provided a solid basis for molecular marker-assisted selection (MAS)and for possibly cloning disease resistance genes in the future.

  6. Successful rescue and field establishment of native banana varieties severely affected by rhizome rot

    Directory of Open Access Journals (Sweden)

    Basawantanahalli Saddappa Sreeramu

    2012-01-01

    Full Text Available Rhizome rot disease caused by Erwinia spp. is emerging as a major problem in banana nurseries and young plantations worldwide. Management of the disease is possible only in the initial stages of development. Currently no method is available for rescuing plant material already infected with this pathogen. A total of 95 Nanjanagud Rasabale and 212 Elakki Bale suckers were collected from different growing regions of Karnataka, India. During nursery maintenance of these lines, severe Erwinia infection was noticed. We present a method to rescue infected plants and establish them under field conditions. Differences were noticed in infection severity amongst the varieties and their accessions. Field data revealed good establishment and growth of most rescued plants under field conditions. The discussed rescue protocol coupled with good field management practices resulted in 89.19 and 82.59 percent field establishment of previously infected var. Nanjanagud Rasabale and var. Elakki Bale plants, respectively.

  7. FIRST REPORT OF Phytophthora nicotianae CAUSING ROOT ROT OF SOURSOP IN NORTHEASTERN BRAZIL

    Directory of Open Access Journals (Sweden)

    JAQUELINE FIGUEREDO DE OLIVEIRA COSTA

    Full Text Available ABSTRACT In 2013, soursop trees showing symptoms of root rot were observed in a field in Maceió, state of Alagoas, Brazil. It was isolated Phytophthora sp. which pathogenicity was confirmed in the host seedlings. Morphological and physiological characteristics in carrot-agar modified medium were consistent with Phytophthora nicotianae description. The PCR sequences products obtained with ITS1/ITS4 primers were compared to sequences of ribosomal DNA of Phytophthora species from the GenBank database observing high identity with other P. nicotianae isolates. A phylogenetic tree was performed to compare the isolate with other sequences of P. nicotianae, which clustering has been verified with 99% of bootstrap, confirming the morphophysiological studies. This is the first report of this pathogen on annonaceous plants in the Northeastern Brazil.

  8. A graphene-based Fabry-Pérot spectrometer in mid-infrared region

    Science.gov (United States)

    Wang, Xiaosai; Chen, Chen; Pan, Liang; Wang, Jicheng

    2016-08-01

    Mid-infrared spectroscopy is of great importance in many areas and its integration with thin-film technology can economically enrich the functionalities of many existing devices. In this paper we propose a graphene-based ultra-compact spectrometer (several micrometers in size) that is compatible with complementary metal-oxide-semiconductor (CMOS) processing. The proposed structure uses a monolayer graphene as a mid-infrared surface waveguide, whose optical response is spatially modulated using electric fields to form a Fabry-Pérot cavity. By varying the voltage acting on the cavity, we can control the transmitted wavelength of the spectrometer at room temperature. This design has potential applications in the graphene-silicon-based optoelectronic devices as it offers new possibilities for developing new ultra-compact spectrometers and low-cost hyperspectral imaging sensors in mid-infrared region.

  9. Nonlinear response of an ultracompact waveguide Fabry-Pérot resonator

    Science.gov (United States)

    Sederberg, S.; Elezzabi, A. Y.

    2013-01-01

    We experimentally demonstrate active tuning of an ultracompact silicon-on-insulator trapezoid Fabry-Pérot resonator having a volume of 5.31 μm3. We show that the ultrafast nonlinear dynamics arising from two-photon and free-carrier absorption can be used to achieve a signal attenuation of 66% in the device, and the changes in the steady-state resonant properties of the device resulting from the thermo-optic effect induce a large red-shift in its resonance of Δλ = 7.57 nm. It is envisaged that the insight gained from this class of device will be valuable in the integrated optics community as ultrafast modulators, and switches are designed to occupy smaller volumes.

  10. Incidence, progression and intensity of Bud Rot in Elaeis guineensis Jacq. in San Lorenzo, Ecuador

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    Fernando Rivas Figueroa

    2017-01-01

    Full Text Available BUD rot (BR is the most serious disease of oil palm in Latin America; in Equator has caused more than 150 million USD of losses. The aim of this work was to determine the incidence, progression and disease intensity of BR in E. guineensis. Incidence and disease progression was determined from data of oil palm enterprises: Palesema, PDA, Palpailón, Energy & Palma y Alespalma during 2006-2013. Disease intensity was determined at 2013. Incidence was 66.75 % and disease intensity was 46 %. Based on projections of accumulative incidence a polynomial equation was built that predicted 78.30 % of cumulative incidence for 2014, indicating exponential growth of BR from 2009 to 2013. Magnitude of damages based on incidence, disease progression and infection index indicated the occurrence of a lethal form of BR in San Lorenzo, province of Esmeraldas, Equator.

  11. Fourier transform two-dimensional fluorescence excitation spectrometer by using tandem Fabry-Pérot interferometer.

    Science.gov (United States)

    Anzai, Hiroshi; Joshi, Neeraj Kumar; Fuyuki, Masanori; Wada, Akihide

    2015-01-01

    A Fourier transform two-dimensional fluorescence excitation spectrometer (FT-2DFES) was developed based on the multiplex technique using a tandem Fabry-Pérot interferometer (tandem FPI). In addition to the advantage of the multiplex technique, the main advantage of the tandem FPI is applicable to the modulation of transition with a large absorption bandwidth (larger than 100 nm) and is thus applicable to the modulation of the excitation of molecules in the condensed phase. As a demonstration of the effectiveness of FT-2DFES, we succeeded in separately observing the fluorescence excitation peaks from a mixed methanol solution of laser dyes (coumarin 480, rhodamine 6G, DCM (4-dicyanomethylene-2-methyl-6-(p-(dimethylamino)styryl)-4H-pyran), and LDS750). Furthermore, the energy transfer from rhodamine 6G to LDS750 was observed.

  12. Unconventional alternatives for control of tomato root rot caused by Rhizoctonia solani under greenhouse conditions

    Directory of Open Access Journals (Sweden)

    Hamza Amany

    2016-07-01

    Full Text Available This study was done to assess the antifungal effect of some biocontrol agents effective microorganisms (EMs1, Pseudomonas fluorescens, and Bacillus pumilus, titanium dioxide (TiO2 nanoparticles, black cumin and wheat germ oils as well as the recommended fungicide (flutolanil against root rot of tomato. Moreover, gas chromatography-mass spectrometry (GC-MS examination was completed to identify the bioactive compounds in plant oils (dark cumin and wheat germ. Also the impact of these medicines on some biochemical and growth parameters of tomato was examined. Flutolanil was the best treatment followed by dark cumin, TiO2, EMs1, Pseudomonas fluorescens, Bacillus pumilus and wheat germ oil, individually in both test seasons. The outcomes demonstrated a marked increase in each biochemical character (chlorophyll substance, peroxidase and polyphenoloxidase and plant development (height and fresh and dry weight under all the tried treatments in comparison to the controls.

  13. Effects of glucose on the Reactive Black 5 (RB5 decolorization by two white rot basidiomycetes

    Directory of Open Access Journals (Sweden)

    Tony Hadibarata

    2011-11-01

    Full Text Available The capacities of glucose in the decolorization process of an azo dye, Reactive Black 5 (RB5, by two white rot basidiomycetes, Pleurotus sp. F019 and Trametes sp. F054 were investigated. The results indicated that the dye degradation by the two fungi was extremely correlated with the presence of glucose in the culture and the process of fungi growth. Decolorization of 200 mg dye/l was increased from 62% and 69% to 100% within 20–25 h with the increase of glucose from 5 to 15 g/l, and the activity of manganese dependent peroxidase (MnP increased by 2–9 fold in this case. Hydrogen peroxide of 0.55 mg/l and 0.43 mg/l were detected in 10 h in Pleurotus sp. F019 and Trametes sp. F054 cultures.

  14. Quantum and classical confinement of resonant states in a trilayer graphene Fabry-Pérot interferometer.

    Science.gov (United States)

    Campos, L C; Young, A F; Surakitbovorn, K; Watanabe, K; Taniguchi, T; Jarillo-Herrero, P

    2012-01-01

    The advent of few-layer graphene has given rise to a new family of two-dimensional systems with emergent electronic properties governed by relativistic quantum mechanics. The multiple carbon sublattices endow the electronic wavefunctions with pseudospin, a lattice analogue of the relativistic electron spin, whereas the multilayer structure leads to electric-field-effect tunable electronic bands. Here we use these properties to realize giant conductance oscillations in ballistic trilayer graphene Fabry-Pérot interferometers, which result from phase coherent transport through resonant bound states beneath an electrostatic barrier. We confine these states by selectively decoupling them from the leads, resulting in transport via non-resonant states and suppression of the giant oscillations. The confinement is achieved both classically, by manipulating quasiparticle momenta with a magnetic field, and quantum mechanically, by locally varying the pseudospin character of the carrier wavefunctions. Our results illustrate the unique potential of trilayer graphene as a versatile platform for electron optics and pseudospintronics.

  15. Recent developments in biodegradation of industrial pollutants by white rot fungi and their enzyme system.

    Science.gov (United States)

    Asgher, Muhammad; Bhatti, Haq Nawaz; Ashraf, Muhammad; Legge, Raymond L

    2008-11-01

    Increasing discharge and improper management of liquid and solid industrial wastes have created a great concern among industrialists and the scientific community over their economic treatment and safe disposal. White rot fungi (WRF) are versatile and robust organisms having enormous potential for oxidative bioremediation of a variety of toxic chemical pollutants due to high tolerance to toxic substances in the environment. WRF are capable of mineralizing a wide variety of toxic xenobiotics due to non-specific nature of their extracellular lignin mineralizing enzymes (LMEs). In recent years, a lot of work has been done on the development and optimization of bioremediation processes using WRF, with emphasis on the study of their enzyme systems involved in biodegradation of industrial pollutants. Many new strains have been identified and their LMEs isolated, purified and characterized. In this review, we have tried to cover the latest developments on enzyme systems of WRF, their low molecular mass mediators and their potential use for bioremediation of industrial pollutants.

  16. Integrated Management of Causal Agents of Postharvest Fruit Rot of Apple

    Directory of Open Access Journals (Sweden)

    Mila Grahovac

    2011-01-01

    Full Text Available One of the major causes of poor quality and fruit loss (during storage and transportare diseases caused by phytopathogenic fungi. Economic losses which are the consequenceof the phytopathogenic fungus activity after harvest exceed the losses in the field.Themost important postharvest fungal pathogens of apple fruits are: Botrytis cinerea Pers. exFr., Penicillium expansum (Lk. Thom., Cryptosporiopsis curvispora (Peck. Grem., Colletotrichumgloeosporioides (Penz. Sacc., Monilinia sp., Gloeosporium album Osterw, Alternaria alternata(Fr. Keissler, Cladosporium herbarium Link., Cylindrocarpon mali (Alles. Wollenw., Stemphyliumbotryosum Wallr. The use of available protection technologies can significantly reducelosses caused by pathogens in storage. The concept of integrated pest management (IPMin apple fruits i.e. sustainable approach in control of causal agents of postharvest fruit rot,using cultural, physical, biological and chemical measures, to minimize economic, healthand risks to consumers and environment, is presented in the paper.

  17. Genome-Wide Association Study on Resistance to Stalk Rot Diseases in Grain Sorghum.

    Science.gov (United States)

    Adeyanju, Adedayo; Little, Christopher; Yu, Jianming; Tesso, Tesfaye

    2015-04-16

    Stalk rots are important biotic constraints to sorghum production worldwide. Several pathogens may be associated with the disease, but Macrophomina phaseolina and Fusarium thapsinum are recognized as the major causal organisms. The diseases become more aggressive when drought and high-temperature stress occur during grain filling. Progress in genetic improvement efforts has been slow due to lack of effective phenotyping protocol and the strong environmental effect on disease incidence and severity. Deployment of modern molecular tools is expected to accelerate efforts to develop resistant hybrids. This study was aimed at identifying genomic regions associated with resistance to both causal organisms. A sorghum diversity panel consisting of 300 genotypes assembled from different parts of the world was evaluated for response to infection by both pathogens. Community resources of 79,132 single nucleotide polymorphic (SNP) markers developed on the panel were used in association studies using a multi-locus mixed model to map loci associated with stalk rot resistance. Adequate genetic variation was observed for resistance to both pathogens. Structure analysis grouped the genotypes into five subpopulations primarily based on the racial category of the genotypes. Fourteen loci and a set of candidate genes appear to be involved in connected functions controlling plant defense response. However, each associated SNP had relatively small effect on the traits, accounting for 19-30% of phenotypic variation. Linkage disequilibrium analyses suggest that significant SNPs are genetically independent. Estimation of frequencies of associated alleles revealed that durra and caudatum subpopulations were enriched for resistant alleles, but the results suggest complex molecular mechanisms underlying resistance to both pathogens.

  18. Reaction of Oilseed Rape Cultivars to Sclerotinia Stem Rot in Field Environments

    Institute of Scientific and Technical Information of China (English)

    SUN Jun-ming; HAN Fen-xia; Malgorzata Jedryczka

    2005-01-01

    Sclerotinia sclerotiorum (Lib.) de Bary, as an ubiquitous phytopathogenic Ascomycete fungus capable of infecting a wide range of plants, has increased in importance for oilseed rape production worldwide in recent years. The objective of this research was to determine the effectiveness of two measurements of disease rating in predicting the field reaction of cultivars to sclerotinia stem rot. One hundred and ten cultivars or lines of oilseed rape were repeatedly evaluated the disease severity index (DSI) and lesion length for their resistance to nine isolates of S. sclerotiorum in two field stations.There were greatly significant differences between two stations, among isolates, among population of cultivars for the disease severity index and lesion length, and also significant station×isolate interaction for lesion length and population×isolate interactions for DSI and lesion length, but interactions of station×isolate for DSI were not significant.Cultivars such as Pomorzanin and Lisek consistently had the lowest disease severity ratings in the field tests. However,most of cultivars were susceptible to sclerotinia stem rot in the field test. A positive correlation between the mean DSI and lesion length was found for both isolates (Sc23 and B1). The correlations ranged from 0.23 to 0.83 at various plots, with nine of the twelve correlations significant. The correlations for disease caused by different fungal isolates were statistically significant difference. These correlations ranged from -0.44 to 0.90, with nine of the thirty-two correlations significant. It indicated that resistance to some isolates was significantly correlated and selection of some varieties for resistance to one isolate appeared to improve resistance to other isolates.

  19. Two previously unknown Phytophthora species associated with brown rot of Pomelo (Citrus grandis) fruits in Vietnam

    Science.gov (United States)

    Schena, Leonardo; Jung, Thomas; Evoli, Maria; Pane, Antonella; Van Hoa, Nguyen; Van Tri, Mai; Wright, Sandra; Ramstedt, Mauritz; Olsson, Christer; Faedda, Roberto; Magnano di San Lio, Gaetano

    2017-01-01

    Two distinct Phytophthora taxa were found to be associated with brown rot of pomelo (Citrus grandis), a new disease of this ancestral Citrus species, in the Vinh Long province, Mekong River Delta area, southern Vietnam. On the basis of morphological characters and using the ITS1-5.8S-ITS2 region of the rDNA and the cytochrome oxidase subunit 1 (COI) as barcode genes, one of the two taxa was provisionally named as Phytophthora sp. prodigiosa, being closely related to but distinct from P. insolita, a species in Phytophthora Clade 9, while the other one, was closely related to but distinct from the Clade 2 species P. meadii and was informally designated as Phytophthora sp. mekongensis. Isolates of P. sp. prodigiosa and P. sp. mekongensis were also obtained from necrotic fibrous roots of Volkamer lemon (C. volkameriana) rootstocks grafted with ‘King’ mandarin (Citrus nobilis) and from trees of pomelo, respectively, in other provinces of the Mekong River Delta, indicating a widespread occurrence of both Phytophthora species in this citrus-growing area. Koch’s postulates were fulfilled via pathogenicity tests on fruits of various Citrus species, including pomelo, grapefruit (Citrus x paradisi), sweet orange (Citrus x sinensis) and bergamot (Citrus x bergamia) as well as on the rootstock of 2-year-old trees of pomelo and sweet orange on ‘Carrizo’ citrange (C. sinensis ‘Washington Navel’ x Poncirus trifoliata). This is the first report of a Phytophthora species from Clade 2 other than P. citricola and P. citrophthora as causal agent of fruit brown rot of Citrus worldwide and the first report of P. insolita complex in Vietnam. Results indicate that likely Vietnam is still an unexplored reservoir of Phytophthora diversity. PMID:28208159

  20. Assessment of Basal Stem Rot Disease Distribution in Palm Oil Plantation Using Geographical Information System

    Directory of Open Access Journals (Sweden)

    Tengku Mohd Azahar

    2014-12-01

    Full Text Available Normal 0 false false false EN-US X-NONE X-NONE The concurrent advances in global positioning systems (GPS and Geographical Information Systems (GIS techniques have provided powerful analysis tools for precision agriculture. This study will focus on how Geographical Information System (GIS can help to assess the distribution Basal Stem Rot Diseases (BSR on oil palm plantation. Basal Stem Rot (BSR is caused by Ganoderma Boninense, and it is the most serious disease for oil palm trees in Malaysia. The fungus infects oil palm trees, initially causing yield loss and finally killing the trees. Various factors were previously reported to influence incidence of BSR, such as previous crops, techniques for replanting, types of soils, density and the age of trees. At present, effective and sustainable management strategies to control BSR are hampered mainly by a lack of understanding of mechanisms of disease establishment, development and spread. The study aims to apply spatial analysis methods to investigate the behaviours of BSR. Data for analysis were obtained from oil palm plantation at Teluk Intan, Perak, Malaysia. /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-parent:""; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin:0cm; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:10.0pt; font-family:"Times New Roman","serif";}

  1. Toxicity of organic and inorganic nanoparticles to four species of white-rot fungi

    Energy Technology Data Exchange (ETDEWEB)

    Galindo, T.P.S., E-mail: pgalindo@ua.pt [CESAM, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); Departamento de Biologia, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); Pereira, R. [CESAM, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre 4169-007 Porto (Portugal); Freitas, A.C.; Santos-Rocha, T.A.P. [CESAM, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); Departamento de Química, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); ISEIT, Instituto Piaget Viseu, Estrada do Alto do Gaio, Lordosa, 3515-776 Viseu (Portugal); Rasteiro, M.G.; Antunes, F. [Department of Chemical Engineering, University of Coimbra, 3030-290 Coimbra (Portugal); Rodrigues, D. [CESAM, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); Departamento de Química, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); ISEIT, Instituto Piaget Viseu, Estrada do Alto do Gaio, Lordosa, 3515-776 Viseu (Portugal); Soares, A.M.V.M.; Gonçalves, F. [CESAM, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); Departamento de Biologia, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); and others

    2013-08-01

    The rapid development of nanoparticles (NP) for industrial applications and large-volume manufacturing, with its subsequent release into the environment, raised the need to understand and characterize the potential effects of NP to biota. Accordingly, this work aimed to assess sublethal effects of five NP to the white-rot fungi species Trametes versicolor, Lentinus sajor caju, Pleurotus ostreatus, and Phanerochaete chrysosporium. Each species was exposed to serial dilutions of the following NP: organic-vesicles of SDS/DDAB and of Mo/NaO; gold-NP, quantum dot CdSe/ZnS, and Fe/Co. Fungi growth rate was monitored every day, and at the end of assay the mycelium from each replicate was collected to evaluate possible changes in its chemical composition. For all NP-suspensions the following parameters were characterized: hydrodynamic diameter, surface charge, aggregation index, zeta potential, and conductivity. All tested NP tended to aggregate when suspended in aqueous media. The obtained results showed that gold-NP, CdSe/ZnS, Mo/NaO, and SDS/DDAB significantly inhibited the growth of fungi with effects on the mycelium chemical composition. Among the tested NP, gold-NP and CdSe/ZnS were the ones exerting a higher effect on the four fungi. Finally to our knowledge, this is the first study reporting that different types of NP induce changes in the chemical composition of fungi mycelium. - Highlights: • Nanoparticles (NP) tend to aggregate when in aqueous suspensions. • Chemical composition revealed to be very important in the ecotoxicity of NP. • Observed effects suggested diversified modes of action of different NP. • White-rot fungi species exhibit great differences in their sensitivity to NP.

  2. Clinical management of foot rot in goats: A case report of lameness

    Directory of Open Access Journals (Sweden)

    Asinamai Athliamai Bitrus

    2017-03-01

    Full Text Available Objective: Foot rot is one of the most important causes of lameness and economic losses in sheep and goats world-wide. This case report described the clinical management of lameness due to foot rot in two female Boer goats aging 4-year both from two different farms in Selangor, Malaysia. Materials and methods: The goats were presented with the complaint of non-weight bearing lameness of the right forelimbs. The hoof was broken and the interdigital space was filled with dirt and exuding a foul smelling odor. Results: On clinical examination, the goats were looking as dull and isolated with body condition scores of 2.5/5 (case 1 and 3/5 (case 2, respectively. The goats had a rectal temperature of 38.8°C and 40.4°C, pulse rate of 80 and 100 beats per minutes, and respiratory rate of 44 and 24 cycles per minute, respectively. Blood sample was collected for complete blood count and serum biochemistry from case 1 only. The hoof was thoroughly washed and disinfected. Parenteral administrations of Flunixin meglumine (dosed at 2.2 mg/kg bwt, IM thrice daily and Oxytetracycline (dosed at 20 mg/kg bwt, IM case 1 once and Sulfadiazine+trimethoprim (dosed at 1 mL/16 kg bwt, IM case 2 for 3 days. Topical oxytetracycline was applied to the area for 5 days. Conclusion: The prognosis was very good as there was a significant improvement in the hoof injury of both animals. The goats were recovered after 7 days of treatment. [J Adv Vet Anim Res 2017; 4(1.000: 110-116

  3. Mycolytic enzymes produced by Streptomyces violaceusniger and their role in antagonism towards wood-rotting fungi.

    Science.gov (United States)

    Nagpure, Anand; Choudhary, Bharti; Gupta, Rajinder K

    2014-05-01

    Extracellular mycolytic enzymes produced under submerged fermentation by the fungal antagonist Streptomyces violaceusniger MTCC 3959 were characterized. This streptomycete produced higher amounts of extracellular chitinase and protease during late exponential phase, whereas β-1,3-glucanase production was at peak in mid-stationary phase. Cell-free culture filtrate (CCF) exhibited a broad range of antifungal activity against both white rot and brown rot fungi. The inhibitory activity was completely lost after treatment with proteinase K and heat, indicating that extracellular antifungal metabolites are heat labile and proteinaceous in nature. Optimum pH and temperature for enzyme activity were: 9.0 and 60 °C for chitinase; 6.0 and 60 °C for β-1,3-glucanase; and 9.0 and 70 °C for protease. Mycolytic enzymes were moderately thermostable, and had a wide pH stability range extending from pH 5.0 to 10.0. The zymogram analysis of CCF revealed five chitinase isoenzymes with an apparent molecular weight of 20.8, 33.3, 45.6, 67.4, and 114.8 kDa, one β-1,3-glucanase appeared as a single band of ∼131.8 kDa and four protease isoenzymes with approximate molecular weights of 22.8, 62.52, 74.64, and 120.5 kDa. S. violaceusniger MTCC 3959 produced mycolytic enzymes that can be effectively used for suppression of phytopathogenic basidiomycetes. It has the potential to be an effective biofungicide.

  4. Etiology and epidemiology of Pythium root rot in hydroponic crops: current knowledge and perspectives

    Directory of Open Access Journals (Sweden)

    John Clifford Sutton

    2006-09-01

    Full Text Available The etiology and epidemiology of Pythium root rot in hydroponically-grown crops are reviewed with emphasis on knowledge and concepts considered important for managing the disease in commercial greenhouses. Pythium root rot continually threatens the productivity of numerous kinds of crops in hydroponic systems around the world including cucumber, tomato, sweet pepper, spinach, lettuce, nasturtium, arugula, rose, and chrysanthemum. Principal causal agents include Pythium aphanidermatum, Pythium dissotocum, members of Pythium group F, and Pythium ultimum var. ultimum. Perspectives are given of sources of initial inoculum of Pythium spp. in hydroponic systems, of infection and colonization of roots by the pathogens, symptom development and inoculum production in host roots, and inoculum dispersal in nutrient solutions. Recent findings that a specific elicitor produced by P. aphanidermatum may trigger necrosis (browning of the roots and the transition from biotrophic to necrotrophic infection are considered. Effects on root rot epidemics of host factors (disease susceptibility, phenological growth stage, root exudates and phenolic substances, the root environment (rooting media, concentrations of dissolved oxygen and phenolic substances in the nutrient solution, microbial communities and temperature and human interferences (cropping practices and control measures are reviewed. Recent findings on predisposition of roots to Pythium attack by environmental stress factors are highlighted. The commonly minor impact on epidemics of measures to disinfest nutrient solution as it recirculates outside the crop is contrasted with the impact of treatments that suppress Pythium in the roots and root zone of the crop. New discoveries that infection of roots by P. aphanidermatum markedly slows the increase in leaf area and whole-plant carbon gain without significant effect on the efficiency of photosynthesis per unit area of leaf are noted. The platform of

  5. Influence of the kind and age of the inoculum on the development of rot caused by Penicillium expansum (Link Thom on stored apples

    Directory of Open Access Journals (Sweden)

    H. Borecka

    2013-12-01

    Full Text Available The influence of the kind and age of the inoculum on development of rot on 'Bankroft' and 'Mcintosh' apples was tested. The inoculum consisted of spore suspension and disks of culture of Penicillium expansum (Link Thorn. Spores were taken from cultures 3, 7, 14, 28 and 52 days old. Disks were prepared from 3- and 7-day-old cultures. The mother cultures in both cases were inoculated with spore suspensione from 7-day-old culture. The influence of the kind and age of cultures was significant, particularly after longer storage period. The rot developed faster after inoculation with the disks of culture than with the spore suspension. The speed of rot development on the four cvs of apples was compared; the rot developed fastest on 'Mcintosh'.

  6. Volatile Profile, Phytochemicals and Antioxidant Activity of Virgin Olive Oils from Croatian Autochthonous Varieties Mašnjača and Krvavica in Comparison with Italian Variety Leccino

    Directory of Open Access Journals (Sweden)

    Mladenka Šarolić

    2014-01-01

    Full Text Available Virgin olive oils (VOOs obtained from the fruits of Croatian autochthonous varieties Mašnjača and Krvavica were extensively characterized for the first time. Investigated oils were compared with the oil obtained from Italian variety Leccino, grown and processed under the same conditions. Headspace volatile profile, tocopherols, chlorophylls, carotenoids and total phenolic content, peroxide value, % acidity, K232, K270 as well as antioxidant activity (DPPH of the oils’ hydrophilic fractions (HFs including their phenolic composition were assessed by means of HS-SPME/GC-MS, HPLC-FL, HPLC-DAD and spectrophotometric methods, respectively. Most of the studied quality parameters varied between the cultivars. The main volatile compounds detected in all tested olive oils were the C6 compounds derived from polyunsaturated fatty acids through the lipoxygenase pathway. Krvavica oil was characterized by hexanal (8.8%–9.4%. Leccino oil contained the highest percentage of (E-hex-2-enal (73.4%–74.0%, whereas (Z-hex-3-enal (21.9%–25.0% and (E-hex-2-enal (27.6%–28.9% dominated in Mašnjača oil. Leccino oil contained the highest amount of tocopherols (312.4 mg/kg, chlorophylls (7.3 mg/kg, carotenoids (4.2 mg/kg and total phenols (246.6 mg/kg. The HF of Leccino oil showed the highest antioxidant capacity (1.3 mmol TEAC/kg, while the HFs of Mašnjača and Krvavica oils exhibited the activity of 0.5 mmol TEAC/kg.

  7. Role of self-sufficiency, productivity and diversification on the economic sustainability of farming systems with autochthonous sheep breeds in less favoured areas in Southern Europe.

    Science.gov (United States)

    Ripoll-Bosch, R; Joy, M; Bernués, A

    2014-08-01

    Traditional mixed livestock cereal- and pasture-based sheep farming systems in Europe are threatened by intensification and specialisation processes. However, the intensification process does not always yield improved economic results or efficiency. This study involved a group of farmers that raised an autochthonous sheep breed (Ojinegra de Teruel) in an unfavourable area of North-East Spain. This study aimed to typify the farms and elucidate the existing links between economic performance and certain sustainability indicators (i.e. productivity, self-sufficiency and diversification). Information was obtained through direct interviews with 30 farms (73% of the farmers belonging to the breeders association). Interviews were conducted in 2009 and involved 32 indicators regarding farm structure, management and economic performance. With a principal component analysis, three factors were obtained explaining 77.9% of the original variance. This factors were named as inputs/self-sufficiency, which included the use of on-farm feeds, the amount of variable costs per ewe and economic performance; productivity, which included lamb productivity and economic autonomy; and productive orientation, which included the degree of specialisation in production. A cluster analysis identified the following four groups of farms: high-input intensive system; low-input self-sufficient system; specialised livestock system; and diversified crops-livestock system. In conclusion, despite the large variability between and within groups, the following factors that explain the economic profitability of farms were identified: (i) high feed self-sufficiency and low variable costs enhance the economic performance (per labour unit) of the farms; (ii) animal productivity reduces subsidy dependence, but does not necessarily imply better economic performance; and (iii) diversity of production enhances farm flexibility, but is not related to economic performance.

  8. Selection of autochthonous lactic acid bacteria from goat dairies and their addition to evaluate the inhibition of Salmonella typhi in artisanal cheese.

    Science.gov (United States)

    Ferrari, Iris da Silva; de Souza, Jane Viana; Ramos, Cintia Lacerda; da Costa, Mateus Matiuzzi; Schwan, Rosane Freitas; Dias, Francesca Silva

    2016-12-01

    This study aimed to select autochthonous lactic acid bacteria (LAB) with probiotic and functional properties from goat dairies and test their addition to artisanal cheese for the inhibition of Salmonella typhi. In vitro tests, including survival in the gastrointestinal tract (GIT), auto- and co-aggregation, the hemolytic test, DNase activity, antimicrobial susceptibility, antibacterial activity, tolerance to NaCl and exopolysaccharide (EPS), gas and diacetyl production were conducted for sixty isolates. Based on these tests, four LAB isolates (UNIVASF CAP 16, 45, 84 and 279) were selected and identified. Additional tests, such as production of lactic and citric acids by UNIVASF CAP isolates were performed in addition to assays of bile salt hydrolase (BSH), β-galactosidase and decarboxylase activity. The four selected LAB produced high lactic acid (>17 g/L) and low citric acid (0.2 g/L) concentrations. All selected strains showed BSH and β-galactosidase activity and none showed decarboxylase activity. Three goat cheeses (1, 2 and control) were produced and evaluated for the inhibitory action of selected LAB against Salmonella typhi. The cheese inoculated with LAB (cheese 2) decreased 0.38 log10 CFU/g of S. Typhy population while in the cheese without LAB inoculation (cheese 1) the pathogen population increased by 0.29 log units. Further, the pH value increased linearly over time, by 0.004 units per day in cheese 1. In the cheese 2, the pH value decreased linearly over time, by 0.066 units per day. The cocktail containing selected Lactobacillus strains with potential probiotic and technological properties showed antibacterial activity against S. typhi in vitro and in artisanal goat cheese. Thus, goat milk is important source of potential probiotic LAB which may be used to inhibit the growth of Salmonella population in cheese goat, contributing to safety and functional value of the product.

  9. Biotransformation of (-)-α-Pinene by Whole Cells of White Rot Fungi, Ceriporia sp. ZLY-2010 and Stereum hirsutum.

    Science.gov (United States)

    Lee, Su-Yeon; Kim, Seon-Hong; Hong, Chang-Young; Kim, Ho-Young; Ryu, Sun-Hwa; Choi, In-Gyu

    2015-09-01

    Two white rot fungi, Ceriporia sp. ZLY-2010 (CER) and Stereum hirsutum (STH) were used as biocatalysts for the biotransformation of (-)-α-pinene. After 96 hr, CER converted the bicyclic monoterpene hydrocarbon (-)-α-pinene into α-terpineol (yield, 0.05 g/L), a monocyclic monoterpene alcohol, in addition to, other minor products. Using STH, verbenone was identified as the major biotransformed product, and minor products were myrtenol, camphor, and isopinocarveol. We did not observe any inhibitory effects of substrate or transformed products on mycelial growth of the fungi. The activities of fungal manganese-dependent peroxidase and laccase were monitored for 15 days to determine the enzymatic pathways related to the biotransformation of (-)-α-pinene. We concluded that a complex of enzymes, including intra- and extracellular enzymes, were involved in terpenoid biotransformation by white rot fungi.

  10. Protection of turmeric plants from rhizome rot disease under field conditions by β-D-glucan nanoparticle.

    Science.gov (United States)

    Anusuya, Sathiyanarayanan; Sathiyabama, Muthukrishnan

    2015-01-01

    The rhizome rot caused by Pythium aphanidermatum is one of the most devastating diseases of the turmeric crop. Fungicides are unable to control the rapidly evolving P. aphanidermatum and new control strategies are urgently needed. This study examined the effect of β-d-glucan nanoparticles (GNP) in turmeric plants under field condition by the foliar spray method. Enhanced plant growth, rhizome yield, and curcumin content demonstrate the positive effect of the GNP on turmeric plants. Rapid activation of various defense enzymes was also observed in leaves and rhizomes of treated plants. GNP-treated plants showed a decreased rot incidence. It may be possible that increased defense enzymes might have played a role in reducing the colonization of pathogen.

  11. Prevention and Control of Gentiana macrophylla Pall Root Rot Disease%秦艽根腐病的防治

    Institute of Scientific and Technical Information of China (English)

    程远辉; 侯志江; 徐中志

    2014-01-01

    The root rot is a major disease affecting yield of Gentiana macrophyl a pal , reducing yield or even causing total crop failure. This research introduced the occurrence characteristics and various control techniques of root rot of Gentiana macrophyl a pal , in order to provide references for farmers.%根腐病是影响秦艽产量的最主要病害,发病后会造成秦艽严重减产甚至绝收。笔者总结了秦艽根腐病的发生特点及各种防治技术,以期为广大药农提供指导。

  12. Antifungal activity of sodium silicate on Fusarium sulphureum and its effect on dry rot of potato tubers.

    Science.gov (United States)

    Li, Y C; Bi, Y; Ge, Y H; Sun, X J; Wang, Y

    2009-06-01

    The antifungal activity of sodium silicate on Fusarium sulphureum and its inhibitory effect on dry rot of potato tubers were investigated. Sodium silicate strongly inhibited spore germination and mycelial growth. Morphological changes in sodium silicate-treated hyphae such as mycelium sparsity and asymmetry, hyphal swelling, curling, and cupped shape were observed by scanning electron microscopy. Ultrastructural alterations were also observed using transmission electron microscopy, including thickening of the hyphal cell walls, cell distortion, cavity, or electron-dense material in hyphal cells. Daughter hyphae and new daughter hyphae inside of the collapsed hyphal cells were often detected in the cytoplasm of sodium silicate-treated hyphae, although the septa of treated hyphae remained uniform. In vivo testing showed that sodium silicate at 100 and 200 mM effectively controlled dry rot of tubers that were challenged by inoculation with a F. sulphureum spore suspension. These findings suggest that sodium silicate has direct fungitoxic activity against the pathogen.

  13. Antagonistic and Biocontrol Potential of Trichoderma asperellum ZJSX5003 Against the Maize Stalk Rot Pathogen Fusarium graminearum.

    Science.gov (United States)

    Li, Yaqian; Sun, Ruiyan; Yu, Jia; Saravanakumar, Kandasamy; Chen, Jie

    2016-09-01

    The efficacy of seven strains of Trichoderma asperellum collected from the fields in Southern China was assessed against Fusarium graminearum (FG) the causal agent of corn stalk rot of maize were in vitro for their antagonistic properties followed by statistical model of principal compound analysis to identify the beneficial antagonist T. asperellum strain. The key factors of antagonist activity were attributed to a total of 13 factors including cell wall degrading enzymes (chitnase, protease and β-glucanases), secondary metabolites and peptaibols and these were analyzed from eight strains of Trichoderma. A linear regression model demonstrated that interaction of enzymes and secondary metabolites of T. asperellum strain ZJSX5003 enhanced the antagonist activity against FG. Further, this strain displayed a disease reduction of 71 % in maize plants inoculated with FG compared to negative control. Pointing out that the T. asperellum strain ZJSX5003 is a potential source for the development of a biocontrol agent against corn stalk rot.

  14. Geometric phase and o-mode blueshift in a chiral anisotropic medium inside a Fabry-Pérot cavity.

    Science.gov (United States)

    Timofeev, Ivan V; Gunyakov, Vladimir A; Sutormin, Vitaly S; Myslivets, Sergey A; Arkhipkin, Vasily G; Vetrov, Stepan Ya; Lee, Wei; Zyryanov, Victor Ya

    2015-11-01

    Anomalous spectral shift of transmission peaks is observed in a Fabry-Pérot cavity filled with a chiral anisotropic medium. The effective refractive index value resides out of the interval between the ordinary and the extraordinary refractive indices. The spectral shift is explained by contribution of a geometric phase. The problem is solved analytically using the approximate Jones matrix method, numerically using the accurate Berreman method, and geometrically using the generalized Mauguin-Poincaré rolling cone method. The o-mode blueshift is measured for a 4-methoxybenzylidene-4'-n-butylaniline twisted-nematic layer inside the Fabry-Pérot cavity. The twist is electrically induced due to the homeoplanar-twisted configuration transition in an ionic-surfactant-doped liquid crystal layer. Experimental evidence confirms the validity of the theoretical model.

  15. GammaScorpion: mobile gamma-ray tomography system for early detection of basal stem rot in oil palm plantations

    Science.gov (United States)

    Abdullah, Jaafar; Hassan, Hearie; Shari, Mohamad Rabaie; Mohd, Salzali; Mustapha, Mahadi; Mahmood, Airwan Affendi; Jamaludin, Shahrizan; Ngah, Mohd Rosdi; Hamid, Noor Hisham

    2013-03-01

    Detection of the oil palm stem rot disease Ganoderma is a major issue in estate management and production in Malaysia. Conventional diagnostic techniques are difficult and time consuming when using visual inspection, and destructive and expensive when based on the chemical analysis of root or stem tissue. As an alternative, a transportable gamma-ray computed tomography system for the early detection of basal stem rot (BSR) of oil palms due to Ganoderma was developed locally at the Malaysian Nuclear Agency, Kajang, Malaysia. This system produces high quality tomographic images that clearly differentiate between healthy and Ganoderma infected oil palm stems. It has been successfully tested and used to detect the extent of BSR damage in oil palm plantations in Malaysia without the need to cut down the trees. This method offers promise for in situ inspection of oil palm stem diseases compared to the more conventional methods.

  16. Bioremediation of CCA-Treated Wood By Brown-Rot Fungi Fomitopsis Palustris, Coniophora Puteana, and Laetiporus Sulphureus

    OpenAIRE

    Kartal, S Nami; Munir, Erman; Kamitani, Tomo

    2008-01-01

    This study evaluated oxalic acid accumulation and bioremediation of chromated copper arscnate (CCA)-treated wood by three brown-rot fungi Fomitopsis palustris Coniophora puteane, and Laetiporus sulphureas. The fungi were first cultivated in a fermentation broth to accumulate oxalic acid. Bioremediation of CCA-treated wood was then carried out by leaching of heavy metals with oxalic acid over a 10-day fermentation period. Higher amounts of oxalic acid were produced by F. polustris and L. sulp...

  17. Research Progress of Root Rot Disease in Barley%大麦根腐病研究进展

    Institute of Scientific and Technical Information of China (English)

    兰国防; 张凤英; 包海柱; 武海明; 刘志萍

    2014-01-01

    As one of the most serious worldwide disease affecting the yield and quality of barley,Root Rot Disease was widely distribu-ted in the Daxinganling mountain area and the Yangtze River basin in China. Root Rot Disease in Barely is the fungal disease caused by Biplaris sorokiniana and its pathogenic bacteria can be parasitized and also can be saprophyticed with strong adaptability. This paper mainly reviewed the cause of root rot disease,its biological characteristics,host range,disease symptoms,identification of the disea-ses,genetics of resistance,and measures on how to control this disease as well as the outlook of the research prospects in root rot dis-ease in barley.%大麦根腐病是严重危害大麦产量和品质的世界性病害之一,在我国的大兴安岭西麓和长江流域分布广泛。大麦根腐病是由根腐离蠕孢菌( Biplaris sorokiniana)引起的真菌性病害,其致病菌可寄生也可腐生,适应性极强。本文主要从大麦根腐病的病原及其生物学特性、寄主范围、病害症状、病害鉴定、抗性遗传和防治方法等方面进行了综述,并展望了大麦根腐病的研究前景。

  18. Wide variation in virulence and genetic diversity of binucleate Rhizoctonia isolates associated with root rot of strawberry in Western Australia.

    Directory of Open Access Journals (Sweden)

    Xiangling Fang

    Full Text Available Strawberry (Fragaria×ananassa is one of the most important berry crops in the world. Root rot of strawberry caused by Rhizoctonia spp. is a serious threat to commercial strawberry production worldwide. However, there is no information on the genetic diversity and phylogenetic status of Rhizoctonia spp. associated with root rot of strawberry in Australia. To address this, a total of 96 Rhizoctonia spp. isolates recovered from diseased strawberry plants in Western Australia were characterized for their nuclear condition, virulence, genetic diversity and phylogenetic status. All the isolates were found to be binucleate Rhizoctonia (BNR. Sixty-five of the 96 BNR isolates were pathogenic on strawberry, but with wide variation in virulence, with 25 isolates having high virulence. Sequence analysis of the internal transcribed spacers of the ribosomal DNA separated the 65 pathogenic BNR isolates into six distinct clades. The sequence analysis also separated reference BNR isolates from strawberry or other crops across the world into clades that correspond to their respective anastomosis group (AG. Some of the pathogenic BNR isolates from this study were embedded in the clades for AG-A, AG-K and AG-I, while other isolates formed clades that were sister to the clades specific for AG-G, AG-B, AG-I and AG-C. There was no significant association between genetic diversity and virulence of these BNR isolates. This study demonstrates that pathogenic BNR isolates associated with root rot of strawberry in Western Australia have wide genetic diversity, and highlights new genetic groups not previously found to be associated with root rot of strawberry in the world (e.g., AG-B or in Australia (e.g., AG-G. The wide variation in virulence and genetic diversity identified in this study will be of high value for strawberry breeding programs in selecting, developing and deploying new cultivars with resistance to these multi-genetic groups of BNR.

  19. Wide variation in virulence and genetic diversity of binucleate Rhizoctonia isolates associated with root rot of strawberry in Western Australia.

    Science.gov (United States)

    Fang, Xiangling; Finnegan, Patrick M; Barbetti, Martin J

    2013-01-01

    Strawberry (Fragaria×ananassa) is one of the most important berry crops in the world. Root rot of strawberry caused by Rhizoctonia spp. is a serious threat to commercial strawberry production worldwide. However, there is no information on the genetic diversity and phylogenetic status of Rhizoctonia spp. associated with root rot of strawberry in Australia. To address this, a total of 96 Rhizoctonia spp. isolates recovered from diseased strawberry plants in Western Australia were characterized for their nuclear condition, virulence, genetic diversity and phylogenetic status. All the isolates were found to be binucleate Rhizoctonia (BNR). Sixty-five of the 96 BNR isolates were pathogenic on strawberry, but with wide variation in virulence, with 25 isolates having high virulence. Sequence analysis of the internal transcribed spacers of the ribosomal DNA separated the 65 pathogenic BNR isolates into six distinct clades. The sequence analysis also separated reference BNR isolates from strawberry or other crops across the world into clades that correspond to their respective anastomosis group (AG). Some of the pathogenic BNR isolates from this study were embedded in the clades for AG-A, AG-K and AG-I, while other isolates formed clades that were sister to the clades specific for AG-G, AG-B, AG-I and AG-C. There was no significant association between genetic diversity and virulence of these BNR isolates. This study demonstrates that pathogenic BNR isolates associated with root rot of strawberry in Western Australia have wide genetic diversity, and highlights new genetic groups not previously found to be associated with root rot of strawberry in the world (e.g., AG-B) or in Australia (e.g., AG-G). The wide variation in virulence and genetic diversity identified in this study will be of high value for strawberry breeding programs in selecting, developing and deploying new cultivars with resistance to these multi-genetic groups of BNR.

  20. The impact of organic fertilizer utilization on Phytopthora pod rot and cocoa pod borer incidences in cacao plantation

    OpenAIRE

    Rosmana, Ade; Dewi, Vien Sartika; Sjam, Sylvia; Rahim, Mohammad Danial; Nasaruddin; Wahyuni, Sri

    2015-01-01

    Phytopthora pod rot (PPR) and cocoa pod borer (CPB) are serious pests giving lost of around 60% and 70% respectively on cacao productivity in Indonesia. In this trial we tried to evaluate the impact of cultural practices by using organic fertilizer made from difference source of organic material on incidences caused by PPR and CPB. The organic fertilizer treatment consist of liquid organic fertilizer, HK compost, BH compost, DN compost, liquid organic fertilizer plus HK compost, liquid or...

  1. The salmonella transcriptome in lettuce and cilantro soft rot reveals a niche overlap with the animal host intestine.

    Science.gov (United States)

    Goudeau, Danielle M; Parker, Craig T; Zhou, Yaguang; Sela, Shlomo; Kroupitski, Yulia; Brandl, Maria T

    2013-01-01

    Fresh vegetables have been recurrently associated with salmonellosis outbreaks, and Salmonella contamination of retail produce has been correlated positively with the presence of soft rot disease. We observed that population sizes of Salmonella enterica serovar Typhimurium SL1344 increased 56-fold when inoculated alone onto cilantro leaves, versus 2,884-fold when coinoculated with Dickeya dadantii, a prevalent pathogen that macerates plant tissue. A similar trend in S. enterica populations was observed for soft-rotted lettuce leaves. Transcriptome analysis of S. enterica cells that colonized D. dadantii-infected lettuce and cilantro leaves revealed a clear shift toward anaerobic metabolism and catabolism of substrates that are available due to the degradation of plant cells by the pectinolytic pathogen. Twenty-nine percent of the genes that were upregulated in cilantro macerates were also previously observed to have increased expression levels in the chicken intestine. Furthermore, multiple genes induced in soft rot lesions are also involved in the colonization of mouse, pig, and bovine models of host infection. Among those genes, the operons for ethanolamine and propanediol utilization as well as for the synthesis of cobalamin, a cofactor in these pathways, were the most highly upregulated genes in lettuce and cilantro lesions. In S. Typhimurium strain LT2, population sizes of mutants deficient in propanediol utilization or cobalamin synthesis were 10- and 3-fold lower, respectively, than those of the wild-type strain in macerated cilantro (P < 0.0002); in strain SL1344, such mutants behaved similarly to the parental strain. Anaerobic conditions and the utilization of nutrients in macerated plant tissue that are also present in the animal intestine indicate a niche overlap that may explain the high level of adaptation of S. enterica to soft rot lesions, a common postharvest plant disease.

  2. GmPGIP3 enhanced resistance to both take-all and common root rot diseases in transgenic wheat.

    Science.gov (United States)

    Wang, Aiyun; Wei, Xuening; Rong, Wei; Dang, Liang; Du, Li-Pu; Qi, Lin; Xu, Hui-Jun; Shao, Yanjun; Zhang, Zengyan

    2015-05-01

    Take-all (caused by the fungal pathogen Gaeumannomyces graminis var. tritici, Ggt) and common root rot (caused by Bipolaris sorokiniana) are devastating root diseases of wheat (Triticum aestivum L.). Development of resistant wheat cultivars has been a challenge since no resistant wheat accession is available. GmPGIP3, one member of polygalacturonase-inhibiting protein (PGIP) family in soybean (Glycine max), exhibited inhibition activity against fungal endopolygalacturonases (PGs) in vitro. In this study, the GmPGIP3 transgenic wheat plants were generated and used to assess the effectiveness of GmPGIP3 in protecting wheat from the infection of Ggt and B. sorokiniana. Four independent transgenic lines were identified by genomic PCR, Southern blot, and reverse transcription PCR (RT-PCR). The introduced GmPGIP3 was integrated into the genomes of these transgenic lines and could be expressed. The expressing GmPGIP3 protein in these transgenic wheat lines could inhibit the PGs produced by Ggt and B. sorokiniana. The disease response assessments postinoculation showed that the GmPGIP3-expressing transgenic wheat lines displayed significantly enhanced resistance to both take-all and common root rot diseases caused by the infection of Ggt and B. sorokiniana. These data suggested that GmPGIP3 is an attractive gene resource in improving resistance to both take-all and common root rot diseases in wheat.

  3. Identification of putative candidate genes for red rot resistance in sugarcane (Saccharum species hybrid) using LD-based association mapping.

    Science.gov (United States)

    Singh, Ram K; Banerjee, Nandita; Khan, M S; Yadav, Sonia; Kumar, Sanjeev; Duttamajumder, S K; Lal, Ram Ji; Patel, Jinesh D; Guo, H; Zhang, Dong; Paterson, Andrew H

    2016-06-01

    Red rot is a serious disease of sugarcane caused by the fungus Colletotrichum falcatum that has a colossal damage potential. The fungus, prevalent mainly in the Indian sub-continent, keeps on producing new pathogenic strains leading to breakdown of resistance in newly released varieties and hence the deployment of linked markers for marker-assisted selection for resistance to this disease can fine tune the breeding programme. This study based on a panel of 119 sugarcane genotypes fingerprinted for 944 SSR alleles was undertaken with an aim to identify marker-trait associations (MTAs) for resistance to red rot. Mixed linear model containing population structure and kinship as co-factor detected four MTAs that were able to explain 10-16 % of the trait variation, individually. Among the four MTAs, EST sequences diagnostic of three could be BLAST searched to the sorghum genome with significant sequence homology. Several genes encoding important plant defence related proteins, viz., cytochrome P450, Glycerol-3-phosphate transporter-1, MAP Kinase-4, Serine/threonine-protein kinase, Ring finger domain protein and others were localized to the vicinity of these MTAs. These positional candidate genes are worth of further investigation and possibly these could contribute directly to red rot resistance, and may find a potential application in marker-assisted sugarcane breeding.

  4. Shade tree spatial structure and pod production explain frosty pod rot intensity in cacao agroforests, Costa Rica.

    Science.gov (United States)

    Gidoin, Cynthia; Avelino, Jacques; Deheuvels, Olivier; Cilas, Christian; Bieng, Marie Ange Ngo

    2014-03-01

    Vegetation composition and plant spatial structure affect disease intensity through resource and microclimatic variation effects. The aim of this study was to evaluate the independent effect and relative importance of host composition and plant spatial structure variables in explaining disease intensity at the plot scale. For that purpose, frosty pod rot intensity, a disease caused by Moniliophthora roreri on cacao pods, was monitored in 36 cacao agroforests in Costa Rica in order to assess the vegetation composition and spatial structure variables conducive to the disease. Hierarchical partitioning was used to identify the most causal factors. Firstly, pod production, cacao tree density and shade tree spatial structure had significant independent effects on disease intensity. In our case study, the amount of susceptible tissue was the most relevant host composition variable for explaining disease intensity by resource dilution. Indeed, cacao tree density probably affected disease intensity more by the creation of self-shading rather than by host dilution. Lastly, only regularly distributed forest trees, and not aggregated or randomly distributed forest trees, reduced disease intensity in comparison to plots with a low forest tree density. A regular spatial structure is probably crucial to the creation of moderate and uniform shade as recommended for frosty pod rot management. As pod production is an important service expected from these agroforests, shade tree spatial structure may be a lever for integrated management of frosty pod rot in cacao agroforests.

  5. Apple ring rot-responsive putative microRNAs revealed by high-throughput sequencing in Malus × domestica Borkh.

    Science.gov (United States)

    Yu, Xin-Yi; Du, Bei-Bei; Gao, Zhi-Hong; Zhang, Shi-Jie; Tu, Xu-Tong; Chen, Xiao-Yun; Zhang, Zhen; Qu, Shen-Chun

    2014-08-01

    MicroRNAs (miRNAs) are small non-coding RNAs, which silence target mRNA via cleavage or translational inhibition to function in regulating gene expression. MiRNAs act as important regulators of plant development and stress response. For understanding the role of miRNAs responsive to apple ring rot stress, we identified disease-responsive miRNAs using high-throughput sequencing in Malus × domestica Borkh.. Four small RNA libraries were constructed from two control strains in M. domestica, crabapple (CKHu) and Fuji Naga-fu No. 6 (CKFu), and two disease stress strains, crabapple (DSHu) and Fuji Naga-fu No. 6 (DSFu). A total of 59 miRNA families were identified and five miRNAs might be responsive to apple ring rot infection and validated via qRT-PCR. Furthermore, we predicted 76 target genes which were regulated by conserved miRNAs potentially. Our study demonstrated that miRNAs was responsive to apple ring rot infection and may have important implications on apple disease resistance.

  6. Fusarium paranaense sp. nov., a member of the Fusarium solani species complex causes root rot on soybean in Brazil.

    Science.gov (United States)

    Costa, Sarah S; Matos, Kedma S; Tessmann, Dauri J; Seixas, Claudine D S; Pfenning, Ludwig H

    2016-01-01

    Isolates of Fusarium obtained from soybean plants showing symptoms of root rot collected in subtropical southern and tropical central Brazil were characterized based on phylogenetic analyses, sexual crossing, morphology, and pathogenicity tests. A novel species within the Fusarium solani species complex (FSSC) causing soybean root rot is formally described herein as Fusarium paranaense. This species can be distinguished from the other soybean root rot pathogens in the FSSC, which are commonly associated with soybean sudden death syndrome (SDS) based on analyses of the combined DNA sequences of translation elongation factor 1-α and the second largest subunit of RNA polymerase II and on interspecies mating compatibility. Bayesian and maximum parsimony phylogenetic analyses showed that isolates of F. paranaense formed a distinct group in clade 3 of the FSSC in contrast to the pathogens currently known to cause SDS, which are in clade 2. Female fertile tester strains were developed that can be used for the identification of this new species in the FSSC based on sexual crosses. All isolates were heterothallic and belonged to a distinct mating population. Fusarium tucumaniae, a known SDS pathogen, was found in the subtropical southern region of the country.

  7. Postharvest biological control of brown rot in peaches after cold storage preceded by preharvest chemical control 1

    Directory of Open Access Journals (Sweden)

    Elizandra Pivotto Pavanello

    2015-12-01

    Full Text Available ABSTRACT Pathogenic fungi cause skin darkening and peach quality depreciation in post harvest. Therefore, alternative techniques to chemical treatment are necessary in order to reduce risks to human health. The aim of this study was to evaluate the effect of the application of Trichoderma harzianum in association with different fungicides applied before harvest to 'Eldorado' peaches for brown rot control and other quality parameters during storage. The treatments consisted of five preharvest fungicide applications (control, captan, iprodione, iminoctadine and tebuconazole associated with postharvest application of T. harzianum, after cold storage (with and without application, in three evaluation times (zero, two and four days at 20 °C, resulting in a 5x2x3 factorial design. The application of T. harzianum only brought benefits to the control of brown rot when combined with the fungicide captan, at zero day shelf life. After two days, there was a greater skin darkening in peaches treated with T. harzianum compared with peaches without the treatment, except for peaches treated with the fungicide iprodione and T. harzianum The application of T. harzianum during postharvest showed no benefits for the control of brown rot, however, the association with fungicides reduced the incidence of Rhizopus stolonifer during the shelf life.

  8. Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungus Postia placenta

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Jiwei; Presley, Gerald N.; Hammel, Kenneth E.; Ryu, Jae-San; Menke, Jon R.; Figueroa, Melania; Hu, Dehong; Orr, Galya; Schilling, Jonathan S.

    2016-09-12

    The fungi that cause brown rot of wood are essential contributors to biomass recycling in forest ecosystems. Their highly efficient cellulolytic systems, which may have practical applications, apparently depend on a combination of two mechanisms: nonselective oxidation of the lignocellulose by reactive oxygen species (ROS) coupled with hydrolysis of the polysaccharide components by a limited set of glycoside hydrolases (GHs). Since the production of strongly oxidizing ROS appears incompatible with the operation of GHs, it has been proposed that the fungi regulate ROS production by maintaining concentration gradients of the chelated metal ions they use to generate extracellular oxidants. However, calculations have indicated that this protective mechanism is physically infeasible. We examined a different hypothesis, that expression of ROS and GH components is temporally staggered by brown rot fungi in wood. We sectioned thin wafers of spruce and aspen that had been colonized directionally by Postia placenta and measured expression of relevant genes and some of the encoded enzymes, thus using the spatial distribution of fungal hyphae to resolve a fine-scale temporal sequence. Hierarchical clustering of gene expression for eight oxidoreductases thought to have a role in ROS production and of eight GHs revealed a zone of oxidoreductase upregulation at the hyphal front that persisted about 48 h before upregulation of the GHs. Additional evidence for differential expression was provided by localization of endoglucanase, xylanase, mannanase, and laccase activities in the colonized wood. Our results support a two-step mechanism for brown rot, in which substrate oxidation precedes enzymatic hydrolysis.

  9. The Effect of Interaction Between White-rot Fungi and Indigenous Microorganisms on Degradation of Polycyclic Aromatic Hydrocarbons in Soil

    Energy Technology Data Exchange (ETDEWEB)

    Wiesche, C. in der [Institute of Plant Nutrition and Soil Science, Federal Agricultural Research Centre (Germany)], E-mail: carsten.wiesche@fal.de; Martens, R. [Institute of Agroecology, Federal Agricultural Research Centre (Germany); Zadrazil, F. [Institute of Plant Nutrition and Soil Science, Federal Agricultural Research Centre (Germany)

    2003-05-15

    White-rot fungi applied for soil bioremediation have to compete with indigenous soil microorganisms. The effect of competition on both indigenous soil microflora and white-rot fungi was evaluated with regard to degradation of polycyclic aromatic hydrocarbons (PAH) with different persistence in soil. Sterile and non-sterile soil was artificially contaminated with {sup 14}C-labeled PAH consisting of three (anthracene), four (pyrene, benz[a]anthracene) and five fused aromatic rings (benzo[a]pyrene, dibenz[a,h]anthracene). The two fungi tested,Dichomitus squalens and Pleurotus ostreatus, produced similar amounts of ligninolytic enzymes in soil, but PAH mineralization by P. ostreatus was significantly higher. Compared to the indigenous soil microflora, P.ostreatus mineralized 5-ring PAH to a larger extent, while the indigenous microflora was superior in mineralizing 3-ring and 4-ring PAH. In coculture the special capabilities of both soil microflora and P. ostreatus were partly restricted due to antagonistic interactions, but essentially preserved. Thus, soil inoculation with P. ostreatus significantly increased the mineralization of high-molecular-weight PAH, and at the same time reduced the mineralization of anthracene and pyrene. Regarding the mineralization of low-molecular-weight PAH, the stimulation of indigenous soil microorganisms by straw amendment was more efficient than application of white-rot fungi.

  10. Rice-Infecting Pseudomonas Genomes Are Highly Accessorized and Harbor Multiple Putative Virulence Mechanisms to Cause Sheath Brown Rot.

    Science.gov (United States)

    Quibod, Ian Lorenzo; Grande, Genelou; Oreiro, Eula Gems; Borja, Frances Nikki; Dossa, Gerbert Sylvestre; Mauleon, Ramil; Cruz, Casiana Vera; Oliva, Ricardo

    2015-01-01

    Sheath rot complex and seed discoloration in rice involve a number of pathogenic bacteria that cannot be associated with distinctive symptoms. These pathogens can easily travel on asymptomatic seeds and therefore represent a threat to rice cropping systems. Among the rice-infecting Pseudomonas, P. fuscovaginae has been associated with sheath brown rot disease in several rice growing areas around the world. The appearance of a similar Pseudomonas population, which here we named P. fuscovaginae-like, represents a perfect opportunity to understand common genomic features that can explain the infection mechanism in rice. We showed that the novel population is indeed closely related to P. fuscovaginae. A comparative genomics approach on eight rice-infecting Pseudomonas revealed heterogeneous genomes and a high number of strain-specific genes. The genomes of P. fuscovaginae-like harbor four secretion systems (Type I, II, III, and VI) and other important pathogenicity machinery that could probably facilitate rice colonization. We identified 123 core secreted proteins, most of which have strong signatures of positive selection suggesting functional adaptation. Transcript accumulation of putative pathogenicity-related genes during rice colonization revealed a concerted virulence mechanism. The study suggests that rice-infecting Pseudomonas causing sheath brown rot are intrinsically diverse and maintain a variable set of metabolic capabilities as a potential strategy to occupy a range of environments.

  11. A genomics-informed, SNP association study reveals FBLN1 and FABP4 as contributing to resistance to fleece rot in Australian Merino sheep

    Directory of Open Access Journals (Sweden)

    Norris Belinda J

    2010-05-01

    Full Text Available Abstract Background Fleece rot (FR and body-strike of Merino sheep by the sheep blowfly Lucilia cuprina are major problems for the Australian wool industry, causing significant losses as a result of increased management costs coupled with reduced wool productivity and quality. In addition to direct effects on fleece quality, fleece rot is a major predisposing factor to blowfly strike on the body of sheep. In order to investigate the genetic drivers of resistance to fleece rot, we constructed a combined ovine-bovine cDNA microarray of almost 12,000 probes including 6,125 skin expressed sequence tags and 5,760 anonymous clones obtained from skin subtracted libraries derived from fleece rot resistant and susceptible animals. This microarray platform was used to profile the gene expression changes between skin samples of six resistant and six susceptible animals taken immediately before, during and after FR induction. Mixed-model equations were employed to normalize the data and 155 genes were found to be differentially expressed (DE. Ten DE genes were selected for validation using real-time PCR on independent skin samples. The genomic regions of a further 5 DE genes were surveyed to identify single nucleotide polymorphisms (SNP that were genotyped across three populations for their associations with fleece rot resistance. Results The majority of the DE genes originated from the fleece rot subtracted libraries and over-representing gene ontology terms included defense response to bacterium and epidermis development, indicating a role of these processes in modulating the sheep's response to fleece rot. We focused on genes that contribute to the physical barrier function of skin, including keratins, collagens, fibulin and lipid proteins, to identify SNPs that were associated to fleece rot scores. Conclusions We identified FBLN1 (fibulin and FABP4 (fatty acid binding protein 4 as key factors in sheep's resistance to fleece rot. Validation of these

  12. ldentification and Control of Powdery Mildew,Boll Rot Disease,Fruit Blight, Blossom Blight,Phytoph-thora Rot,Alternaria Fruit Rot of Eggplant%茄子白粉病、红腐病、果实疫病、花腐病、绵疫病和交链孢果腐病的识别与防治

    Institute of Scientific and Technical Information of China (English)

    李继红

    2012-01-01

    Damage symptom and onset characteristics of powdery mildew,boll rot disease,fruit blight,blossom blight, phytophthora rot and alternaria fruit rot of eggplant were introduced. To control these diseases scientifically and effec-tively on the basis of correct identifica-tion was the best way of mitigation of damage and increasing income.The study provided theoretical basis for improving yield and quality of eggplant.%介绍了茄子白粉病、红腐病、果实疫病、花腐病、绵疫病和交链孢果腐病的危害症状及发病特点,提出在正确识别病害的基础上,做到科学、有效的防治,是减轻损失、增大收益的最佳途径。为提高茄子的产量和品质提供了一定的理论依据。

  13. Quorum sensing signaling molecules produced by reference and emerging soft-rot bacteria (Dickeya and Pectobacterium spp..

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    Alexandre Crépin

    Full Text Available BACKGROUND: Several small diffusible molecules are involved in bacterial quorum sensing and virulence. The production of autoinducers-1 and -2, quinolone, indole and γ-amino butyrate signaling molecules was investigated in a set of soft-rot bacteria belonging to six Dickeya or Pectobacterium species including recent or emerging potato isolates. METHODOLOGY/PRINCIPAL FINDINGS: Using bacterial biosensors, immunoassay, and chromatographic analysis, we showed that soft-rot bacteria have the common ability to produce transiently during their exponential phase of growth the N-3-oxo-hexanoyl- or the N-3-oxo-octanoyl-l-homoserine lactones and a molecule of the autoinducer-2 family. Dickeya spp. produced in addition the indole-3-acetic acid in tryptophan-rich conditions. All these signaling molecules have been identified for the first time in the novel Dickeya solani species. In contrast, quinolone and γ-amino butyrate signals were not identified and the corresponding synthases are not present in the available genomes of soft-rot bacteria. To determine if the variations of signal production according to growth phase could result from expression modifications of the corresponding synthase gene, the respective mRNA levels were estimated by reverse transcriptase-PCR. While the N-acyl-homoserine lactone production is systematically correlated to the synthase expression, that of the autoinducer-2 follows the expression of an enzyme upstream in the activated methyl cycle and providing its precursor, rather than the expression of its own synthase. CONCLUSIONS/SIGNIFICANCE: Despite sharing the S-adenosylmethionine precursor, no strong link was detected between the production kinetics or metabolic pathways of autoinducers-1 and -2. In contrast, the signaling pathway of autoinducer-2 seems to be switched off by the indole-3-acetic acid pathway under tryptophan control. It therefore appears that the two genera of soft-rot bacteria have similarities but also

  14. Quorum Sensing Signaling Molecules Produced by Reference and Emerging Soft-Rot Bacteria (Dickeya and Pectobacterium spp.)

    Science.gov (United States)

    Crépin, Alexandre; Barbey, Corinne; Beury-Cirou, Amélie; Hélias, Valérie; Taupin, Laure; Reverchon, Sylvie; Nasser, William; Faure, Denis; Dufour, Alain; Orange, Nicole; Feuilloley, Marc; Heurlier, Karin; Burini, Jean-François; Latour, Xavier

    2012-01-01

    Background Several small diffusible molecules are involved in bacterial quorum sensing and virulence. The production of autoinducers-1 and -2, quinolone, indole and γ-amino butyrate signaling molecules was investigated in a set of soft-rot bacteria belonging to six Dickeya or Pectobacterium species including recent or emerging potato isolates. Methodology/Principal Findings Using bacterial biosensors, immunoassay, and chromatographic analysis, we showed that soft-rot bacteria have the common ability to produce transiently during their exponential phase of growth the N-3-oxo-hexanoyl- or the N-3-oxo-octanoyl-l-homoserine lactones and a molecule of the autoinducer-2 family. Dickeya spp. produced in addition the indole-3-acetic acid in tryptophan-rich conditions. All these signaling molecules have been identified for the first time in the novel Dickeya solani species. In contrast, quinolone and γ-amino butyrate signals were not identified and the corresponding synthases are not present in the available genomes of soft-rot bacteria. To determine if the variations of signal production according to growth phase could result from expression modifications of the corresponding synthase gene, the respective mRNA levels were estimated by reverse transcriptase-PCR. While the N-acyl-homoserine lactone production is systematically correlated to the synthase expression, that of the autoinducer-2 follows the expression of an enzyme upstream in the activated methyl cycle and providing its precursor, rather than the expression of its own synthase. Conclusions/Significance Despite sharing the S-adenosylmethionine precursor, no strong link was detected between the production kinetics or metabolic pathways of autoinducers-1 and -2. In contrast, the signaling pathway of autoinducer-2 seems to be switched off by the indole-3-acetic acid pathway under tryptophan control. It therefore appears that the two genera of soft-rot bacteria have similarities but also differences in the

  15. Interferência da microbiota autóctone do queijo coalho sobre Staphylococcus coagulase positiva Interference of autochthonous microbiota of curd cheese on Staphylococcus coagulase positive

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    Terezinha Feitosa Machado

    2011-06-01

    Full Text Available Níveis elevados de contaminantes microbiológicos, comumente encontrados em alimentos de origem animal e ambientes de processamento de alimentos, são aptos de impedir o crescimento de patógenos nestes produtos. Em alguns contextos onde bactérias ácido láticas (BAL constituem a microbiota dominante, como nos produtos lácteos, Staphylococcus coagulase positiva (SCP colonizam, persistem e produzem intoxicação alimentar. Com o objetivo de verificar a possível interferência da microbiota encontrada no queijo Coalho sobre a presença de SCP, 64 amostras provenientes de 16 laticínios foram submetidas a análises microbiológicas para determinar os níveis de microrganismos aeróbios mesófilos (MAM, BAL e SCP. Os resultados obtidos mostraram que a microbiota autóctone das amostras analisadas não gerou condições inadequadas ao crescimento, desenvolvimento e isolamento de SCP, uma vez que este patógeno foi detectado mesmo nas amostras que apresentaram altos níveis de contagens de MAM e BAL.High levels of microbial contamination, commonly found in animal origin foods and food processing environments, are able to hinder the growth in these products. In some contexts where lactic acid bacteria (LAB are the normal dominant microbiota, such as in fermented food, Staphylococcus coagulase positive (SCP colonises, persists and produces food poisoning. With the aim of verifying the interference of autochthonous microbiota encountered in Curd cheese over the presence of Staphylococcus aureus, 64 samples from 16 dairy were submitted to microbiological analysis to determine the levels of Microorganisms aerobes mesophilics (MAM, LAB and SCP. The results showed that the indigenous microbiota of the samples did not lead to inadequate growth, development and isolation of SCP, since this pathogen was detected even in samples with high levels of counts of AM and BAL.

  16. Aroma Profile of Montepulciano d'Abruzzo Wine Fermented by Single and Co-culture Starters of Autochthonous Saccharomyces and Non-saccharomyces Yeasts

    Science.gov (United States)

    Tofalo, Rosanna; Patrignani, Francesca; Lanciotti, Rosalba; Perpetuini, Giorgia; Schirone, Maria; Di Gianvito, Paola; Pizzoni, Daniel; Arfelli, Giuseppe; Suzzi, Giovanna

    2016-01-01

    autochthonous strains to impart the specific characteristics of a given wine which are an expression of a specific terroir. PMID:27199939

  17. QUALITY OF AUTOCHTHONOUS SICILIAN PLUMS

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    F. Sottile

    2015-09-01

    Full Text Available Thirty four plum local varieties and accessions obtained from different growing area of the Sicilian island were analyzed for their qualitative and nutraceutical properties and three commercialcultivar were used as references. These properties included the fruit fresh weight (g, the pulp firmness (FFF, the total soluble solids (TSS, the titratable acidity (TA, the total anthocyanins,the phenolics content and the antioxidant activity.This preliminary study showed significantly differeces among the plums; Zuccarato giallo and Prunu Niuru presented TSS higher than the commercial cultivars (24.9 and 21.6 °Brix respectivelyand interesting data obtained on the nutraceutical compounds values suggested these local cultivars as sources of polyphenols (Zuccarato giallo with 663 mg GA/100 gFW and naturalantioxidants (Pruno Regina with 47.46 Fe2+/100 gFW. The characterization of these plums could represent also an important resource for the international activity in the genetic improving andthe collection of the more interesting quality traits could be useful for improving the Prunus database actually in use.

  18. Identification of naphthalene metabolism by white rot fungus Armillaria sp.F022

    Institute of Scientific and Technical Information of China (English)

    Tony Hadibarata; Abdull Rahim Mohd Yusoff; Azmi Aris; Risky Ayu Kristanti

    2012-01-01

    Armillaria sp.F022,a white rot fungus isolated from tropical rain forest (Samarinda,Indonesia) was used to biodegrade naphthalene in cultured medium.Transformation of naphthalene by Armillaria sp.F022 which is able to use naphthalene,a two ring-polycyclic aromatic hydrocarbon (PAH) as a source of carbon and energy was investigated.The metabolic pathway was elucidated by identifying metabolites,biotransformation studies and monitoring enzyme activities in cell-free extracts.The identification of metabolites suggests that Armillaria sp.F022 initiates its attack on naphthalene by dioxygenation at its C-1 and C-4 positions to give 1,4-naphthoquinone.The intermediate 2-hydroxybenzaldehyde and salicylic acid,and the characteristic of the meta-cleavage of the resulting diol were identified in the long-term incubation.A part from typical metabolites of naphthalene degradation known from mesophiles,benzoic acid was identified as the next intermediate for the naphthalene pathway of this Armillaria sp.F022.Neither phthalic acid,catechol and cis,cis-muconic acid metabolites were detected in culture extracts.Several enzymes (manganese peroxidase,lignin peroxidase,laccase,1,2-dioxygenase and 2,3-dioxygenase) produced by Armillaria sp.F022 were detected during the incubation.

  19. Ethanol Production from Various Sugars and Cellulosic Biomass by White Rot Fungus Lenzites betulinus.

    Science.gov (United States)

    Im, Kyung Hoan; Nguyen, Trung Kien; Choi, Jaehyuk; Lee, Tae Soo

    2016-03-01

    Lenzites betulinus, known as gilled polypore belongs to Basidiomycota was isolated from fruiting body on broadleaf dead trees. It was found that the mycelia of white rot fungus Lenzites betulinus IUM 5468 produced ethanol from various sugars, including glucose, mannose, galactose, and cellobiose with a yield of 0.38, 0.26, 0.07, and 0.26 g of ethanol per gram of sugar consumed, respectively. This fungus relatively exhibited a good ethanol production from xylose at 0.26 g of ethanol per gram of sugar consumed. However, the ethanol conversion rate of arabinose was relatively low (at 0.07 g of ethanol per gram sugar). L. betulinus was capable of producing ethanol directly from rice straw and corn stalks at 0.22 g and 0.16 g of ethanol per gram of substrates, respectively, when this fungus was cultured in a basal medium containing 20 g/L rice straw or corn stalks. These results indicate that L. betulinus can produce ethanol efficiently from glucose, mannose, and cellobiose and produce ethanol very poorly from galactose and arabinose. Therefore, it is suggested that this fungus can ferment ethanol from various sugars and hydrolyze cellulosic materials to sugars and convert them to ethanol simultaneously.

  20. Carbon Dioxide and Methane Formation in Norway Spruce Stems Infected by White-Rot Fungi

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    Ari M. Hietala

    2015-09-01

    Full Text Available Globally, billions of tons of carbon sequestered in trees are annually recycled back to the atmosphere through wood decomposition by microbes. In Norway, every fifth Norway spruce shows at final harvest infection by pathogenic white-rot fungi in the genera Heterobasidion and Armillaria. As these fungi can mineralize all components of wood, we predicted that they have a significant carbon footprint. Gas samples taken from infected stems were analyzed for CO2 and CH4 concentrations, and wood samples from different parts of the decay columns were incubated under hypoxic (4% O2 and anoxic laboratory conditions. In spring and summer the stem concentrations of CO2 were generally two times higher in trees with heartwood decay than in healthy trees. For most of the healthy trees and trees with heartwood decay, mean stem concentrations of CH4 were comparable to ambient air, and only some Armillaria infected trees showed moderately elevated CH4. Consistently, low CH4 production potentials were recorded in the laboratory experiment. Up-scaling of CO2 efflux due to wood decay in living trees suggests that the balance between carbon sequestration and emission may be substantially influenced in stands with high frequency of advanced root and stem heartwood decay.

  1. Biocontrol of the Potato Blackleg and Soft Rot Diseases Caused by Dickeya dianthicola.

    Science.gov (United States)

    Raoul des Essarts, Yannick; Cigna, Jérémy; Quêtu-Laurent, Angélique; Caron, Aline; Munier, Euphrasie; Beury-Cirou, Amélie; Hélias, Valérie; Faure, Denis

    2015-10-23

    Development of protection tools targeting Dickeya species is an important issue in the potato production. Here, we present the identification and the characterization of novel biocontrol agents. Successive screenings of 10,000 bacterial isolates led us to retain 58 strains that exhibited growth inhibition properties against several Dickeya sp. and/or Pectobacterium sp. pathogens. Most of them belonged to the Pseudomonas and Bacillus genera. In vitro assays revealed a fitness decrease of the tested Dickeya sp. and Pectobacterium sp. pathogens in the presence of the biocontrol agents. In addition, four independent greenhouse assays performed to evaluate the biocontrol bacteria effect on potato plants artificially contaminated with Dickeya dianthicola revealed that a mix of three biocontrol agents, namely, Pseudomonas putida PA14H7 and Pseudomonas fluorescens PA3G8 and PA4C2, repeatedly decreased the severity of blackleg symptoms as well as the transmission of D. dianthicola to the tuber progeny. This work highlights the use of a combination of biocontrol strains as a potential strategy to limit the soft rot and blackleg diseases caused by D. dianthicola on potato plants and tubers.

  2. Bioremediation of Direct Blue 14 and Extracellular Ligninolytic Enzyme Production by White Rot Fungi: Pleurotus Spp.

    Directory of Open Access Journals (Sweden)

    M. P. Singh

    2013-01-01

    Full Text Available In the present investigation, four species of white rot fungi (Pleurotus, that is, P. flabellatus, P. florida, P. ostreatus and P. sajor-caju were used for decolorization of direct blue 14 (DB14. Among all four species of Pleurotus, P. flabellatus showed the fastest decolorization in petri plates on different concentration, that is, 200 mg/L, 400 mg/L, and 600 mg/L. All these four species were also evaluated for extracellular ligninolytic enzymes (laccase and manganese peroxidase production and it was observed that the twelve days old culture of P. flabellatus showed the maximum enzymatic activity, that is, 915.7 U/mL and 769.2 U/mL of laccase and manganese peroxidase, respectively. Other three Pleurotus species took more time for dye decolorization and exhibited less enzymatic activities. The rate of decolorization of DB14 dye solution (20 mg/L by crude enzymes isolated from P. flabellatus was very fast, and it was observed that up to 90.39% dye solution was decolorized in 6 hrs of incubation.

  3. Rhamnolipid Biosurfactant against Fusarium verticillioides to Control Stalk and Ear Rot Disease of Maize.

    Science.gov (United States)

    Borah, Siddhartha N; Goswami, Debahuti; Sarma, Hridip K; Cameotra, Swaranjit S; Deka, Suresh

    2016-01-01

    Antifungal activity of rhamnolipids (RLs) has been widely studied against many plant pathogenic fungi, but not against Fusarium verticillioides, a major pathogen of maize (Zea mays L.). F. verticillioides causes stalk and ear rot of maize or asymptomatically colonizes the plant and ears resulting in moderate to heavy crop loss throughout the world. F. verticillioides produces fumonisin mycotoxins, reported carcinogens, which makes the contaminated ears unsuitable for consumption. In this study, the RL produced using glucose as sole carbon source was characterized by FTIR and LCMS analyses and its antifungal activity against F. verticillioides was evaluated in vitro on maize stalks and seeds. Further, the effect of RL on the mycelia of F. verticillioides was investigated by scanning electron microscopy which revealed visible damage to the mycelial structure as compared to control samples. In planta, treatment of maize seeds with a RL concentration of 50 mg l(-1) resulted in improved biomass and fruiting compared to those of healthy control plants and complete suppression of characteristic disease symptoms and colonization of maize by F. verticillioides. The study highlights the potential of RLs to be used for an effective biocontrol strategy against colonization of maize plant by F. verticillioides.

  4. Zinc Induced Enzymatic Defense Mechanisms in Rhizoctonia Root Rot Infected Clusterbean Seedlings

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    Neha Wadhwa

    2014-01-01

    Full Text Available This investigation was planned to determine the effect of different concentrations of zinc (Zn on biochemical constituents of clusterbean, which play an important role in disease resistance mechanisms. Clusterbean seedlings were grown with 0, 10, or 20 mg Zn kg−1 soil treatments in earthen pots filled with 700 g inoculated soil. Soil was inoculated by pretreatment with 250 mg (wet weight of Rhizoctonia inoculums per pot. A similar set was maintained in uninoculated soil. Root rot incidence decreased to 41 and 27 per cent with 10 and 20 mg Zn kg−1 soil treatments, respectively, as compared to 68 percent at control. Antioxidative enzyme activity (polyphenol oxidase, peroxidase, phenylalanine ammonia lyase, and tyrosine ammonia lyase increased in inoculated seedlings and was increased further by 20 mg Zn kg−1 soil treatment. Antioxidative enzymes play an important role against fungal invasion, as peroxidase is involved in the formation of barrier via lignifications at the site of pathogen penetration. PAL and TAL play a key role in phenylpropanoid metabolism and could perform defense-related functions. Zn acts as a cofactor for these enzymes, so it can be concluded that Zn may be used as a soil-nutritive agent to increase resistance in plants against fungal diseases.

  5. The expansion of brown rot disease throughout Bolivia: possible role of climate change.

    Science.gov (United States)

    Castillo, José Antonio; Plata, Giovanna

    2016-05-01

    Bacterial wilt is a devastating plant disease caused by the bacterial pathogen Ralstonia solanacearum species complex and affects different crops. Bacterial wilt infecting potato is also known as brown rot (BR) and is responsible for significant economic losses in potato production, especially in developing countries. In Bolivia, BR affects up to 75% of the potato crop in areas with high incidence and 100% of stored potatoes. The disease has disseminated since its introduction to the country in the mid-1980s mostly through contaminated seed tubers. To avoid this, local farmers multiply seed tubers in highlands because the strain infecting potatoes cannot survive near-freezing temperatures that are typical in the high mountains. Past disease surveys have shown an increase in seed tubers with latent infection in areas at altitudes lower than 3000 m a.s.l. Since global warming is increasing in the Andes Mountains, in this work, we explored the incidence of BR in areas at altitudes above 3000 m a.s.l. Results showed BR presence in the majority of these areas, suggesting a correlation between the increase in disease incidence and the increase in temperature and the number of irregular weather events resulting from climate change. However, it cannot be excluded that the increasing availability of latently infected seed tubers has boosted the spread of BR.

  6. Physisporinus vitreus: a versatile white rot fungus for engineering value-added wood products.

    Science.gov (United States)

    Schwarze, Francis W M R; Schubert, Mark

    2011-11-01

    The credo of every scientist working in the field of applied science is to transfer knowledge "from science to market," a process that combines (1) science (fundamental discoveries and basic research) with (2) technology development (performance assessment and optimization) and (3) technology transfer (industrial application). Over the past 7 years, we have intensively investigated the potential of the white rot fungus, Physisporinus vitreus, for engineering value-added wood products. Because of its exceptional wood degradation pattern, i.e., selective lignification without significant wood strength losses and a preferential degradation of bordered pit membranes, it is possible to use this fungus under controlled conditions to improve the acoustic properties of tonewood (i.e., "mycowood") as well as to enhance the uptake of preservatives and wood modification substances in refractory wood species (e.g., Norway spruce), a process known as "bioincising." This minireview summarizes the research that we have performed with P. vitreus and critically discusses the challenges encountered during the development of two distinct processes for engineering value-added wood products. Finally, we peep into the future potential of the bioincising and mycowood processes for additional applications in the forest and wood industry.

  7. Occurrence OF Pectobacterium carotovorum strains isolated from potato soft rot in Morocco.

    Science.gov (United States)

    Terta, M; El Karkouri, A; Ait M'hand, R; Achbani, E; Barakate, M; Amdan, M; Annajar, B; El Hassouni, M; Val, F; Bouteau, F; Ennaji, M M

    2010-09-11

    Pectobacterium carotovorum subsp. carotovorum, Pectobacterium astrosepticum and Pectobacterium chrysanthemi are the soft rot tuber of potatoes pathogens (Solanum tuberosum). The aim of this study was to determine the occurrence of these pathogens in Moroccan regions producing potatoes. Fifty three isolates of Pectobacterium were isolated on medium Crystal Violet Pectate. The comparison of their bacteriological characteristics with standard strains allowed us to conclude that all the isolates belonged to the Pectobacterium. With regard to phenotype characteristics, the variability that was found included 32 typical Pectobacetrium carotovorum subsp. carotovorum, 3 typical Pectobacterium atrosepticum, and 18 atypical Pectobacterium carotovorum subsp. carotovorum. Three strains of the atypical group; showed that the biochemical properties overlap among the Pectobacterium carotovorum and Pectobacterium chrysanthemi. These data were needed molecular characterization. However, the PCR amplification of total genomic DNA of 53 isolates with the two primers Y1/Y2 and P143/P145 yielded an amplified fragment of the expected size (434 bp) only with Y1/Y2, indicated that all the isolates collected and tested belonged to the Pectobacterium carotovorum species. On the basis the pathogenicity tests, these strains revealed that they were pectinolytic, and showed differences in aggressiveness against potato and leaves of tobacco.

  8. Comparative Examination of the Olive Mill Wastewater Biodegradation Process by Various Wood-Rot Macrofungi

    Directory of Open Access Journals (Sweden)

    Georgios Koutrotsios

    2014-01-01

    Full Text Available Olive mill wastewater (OMW constitutes a major cause of environmental pollution in olive-oil producing regions. Sixty wood-rot macrofungi assigned in 43 species were evaluated for their efficacy to colonize solidified OMW media at initially established optimal growth temperatures. Subsequently eight strains of the following species were qualified: Abortiporus biennis, Ganoderma carnosum, Hapalopilus croceus, Hericium erinaceus, Irpex lacteus, Phanerochaete chrysosporium, Pleurotus djamor, and P. pulmonarius. Fungal growth in OMW (25%v/v in water resulted in marked reduction of total phenolic content, which was significantly correlated with the effluent’s decolorization. A. biennis was the best performing strain (it decreased phenolics by 92% and color by 64% followed by P. djamor and I. lacteus. Increase of plant seeds germination was less pronounced evidencing that phenolics are only partly responsible for OMW’s phytotoxicity. Laccase production was highly correlated with all three biodegradation parameters for H. croceus, Ph. chrysosporium, and Pleurotus spp., and so were manganese-independent and manganese dependent peroxidases for A. biennis and I. lacteus. Monitoring of enzymes with respect to biomass production indicated that Pleurotus spp., H. croceus, and Ph. chrysosporium shared common patterns for all three activities. Moreover, generation of enzymes at the early biodegradation stages enhanced the efficiency of OMW treatment.

  9. Role of brown-rot fungi in the bioremoval of azo dyes under different conditions

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    Naeem Ali

    2010-12-01

    Full Text Available The present study is vital to the understanding of bioremediation of structurally different azo dyes by some unusual Brown-rot fungi. Bioremoval of each dye (20 mg l-1 was tested in two different culture media under static and shaking conditions by taking inocula from different fungi. Fungal strains showed varying dyes removal abilities, though considerable high in case of Acid Red (AR 151(di-azo as compared to Orange (Or II (mono-azo. With an exception of Aspergillus tereus SA3, all the fungal isolates showed higher removal of dyes in SDB. Under static condition, the maximum decolorizing fungal strains were; Aspergillus flavus SA2 (67% and Alternaria spp. SA4 (57% in AR 151, while Penicillium spp. (34 and 33 % in Orange II, in SDB and STE, respectively. Bioremoval of dyes was considerably increased when experiments were shifted from static to shaking mode. It was specifically increased (% in; AR 151 (255 with Penicillium spp., Or II with A. flavus SA2 (112 and Alternaria spp. (111. The primary mechanism of dyes removal proved to be fungal biosorption. However, reduction of dyes (onto fungal with formation of their products (α. naphthol, sulphalinic acid and aniline furthermore revealed that dyes (specifically azo were actually biodegraded.

  10. Rhamnolipid Biosurfactant against Fusarium verticillioides to Control Stalk and Ear Rot Disease of Maize

    Directory of Open Access Journals (Sweden)

    Siddhartha Narayan Borah

    2016-09-01

    Full Text Available Antifungal activity of rhamnolipids (RLs has been widely studied against many plant pathogenic fungi, but not against Fusarium verticillioides, a major pathogen of maize (Zea mays L.. F. verticillioides causes stalk and ear rot of maize or asymptomatically colonizes the plant and ears resulting in moderate to heavy crop loss throughout the world. F. verticillioides produces fumonisin mycotoxins, reported carcinogens, which makes the contaminated ears unsuitable for consumption. In this study, the RL produced using glucose as sole carbon source was characterized by FTIR and LCMS analyses and its antifungal activity against F. verticillioides was evaluated in vitro on maize stalks and seeds. Further, the effect of RL on the mycelia of F. verticillioides was investigated by scanning electron microscopy which revealed visible damage to the mycelial structure as compared to control samples. In planta, treatment of maize seeds with a RL concentration of 50 mg l-1 resulted in improved biomass and fruiting compared to those of healthy control plants and complete suppression of characteristic disease symptoms and colonization of maize by F. verticillioides. The study highlights the potential of RLs to be used for an effective biocontrol strategy against colonization of maize plant by F. verticillioides.

  11. Saccharification of Lignocelluloses by Carbohydrate Active Enzymes of the White Rot Fungus Dichomitus squalens

    Science.gov (United States)

    Rytioja, Johanna; Hildén, Kristiina; Mäkinen, Susanna; Vehmaanperä, Jari; Hatakka, Annele; Mäkelä, Miia R.

    2015-01-01

    White rot fungus Dichomitus squalens is an efficient lignocellulose degrading basidiomycete and a promising source for new plant cell wall polysaccharides depolymerizing enzymes. In this work, we focused on cellobiohydrolases (CBHs) of D. squalens. The native CBHI fraction of the fungus, consisting three isoenzymes, was purified and it maintained the activity for 60 min at 50°C, and was stable in acidic pH. Due to the lack of enzyme activity assay for detecting only CBHII activity, CBHII of D. squalens was produced recombinantly in an industrially important ascomycete host, Trichoderma reesei. CBH enzymes of D. squalens showed potential in hydrolysis of complex lignocellulose substrates sugar beet pulp and wheat bran, and microcrystalline cellulose, Avicel. Recombinant CBHII (rCel6A) of D. squalens hydrolysed all the studied plant biomasses. Compared to individual activities, synergistic effect between rCel6A and native CBHI fraction of D. squalens was significant in the hydrolysis of Avicel. Furthermore, the addition of laccase to the mixture of CBHI fraction and rCel6A significantly enhanced the amount of released reducing sugars from sugar beet pulp. Especially, synergy between individual enzymes is a crucial factor in the tailor-made enzyme mixtures needed for hydrolysis of different plant biomass feedstocks. Our data supports the importance of oxidoreductases in improved enzyme cocktails for lignocellulose saccharification. PMID:26660105

  12. Bioremediation of a wine distillery wastewater using white rot fungi and the subsequent production of laccase.

    Science.gov (United States)

    Strong, P J; Burgess, J E

    2007-01-01

    The aim of this work was to ascertain whether a submerged culture of a white rot fungus could be used to treat distillery wastewater, and whether the compounds present in the wastewater would stimulate laccase production. Trametes pubescens MB 89, Ceriporiopsis subvermispora, Pycnoporus cinnabarinus and UD4 were screened for their ability for the bioremediation of a raw, untreated distillery wastewater as well as distillery wastewater that had been pretreated by polyvinylpolypyrrolidone. Suitability of each strain was measured as a function of decreasing the chemical oxygen demand (COD) and total phenolic compounds concentration and the colour of the wastewater, while simultaneously producing laccase in high titres. After screening, T. pubescens MB 89 was used further in flask cultures and attained 79 +/- 1.1% COD removal, 80 +/- 4.6% total phenols removal, 71 +/- 1.6% decrease in colour at an absorbance of 500 nm and increased the pH from 5.3 to near-neutral. Laccase activity in flask cultures peaked at 4,644 +/- 228 units/l, while the activity in a 50 l bubble lift reactor peaked at 12,966 +/- 71 units/l. Trametes pubescens MB 89 greatly improved the quality of a wastewater known for toxicity towards biological treatment systems, while simultaneously producing an industrially relevant enzyme.

  13. Fabry-Pérot-Michelson interferometer using higher-order Laguerre-Gauss modes

    Science.gov (United States)

    Gatto, A.; Tacca, M.; Kéfélian, F.; Buy, C.; Barsuglia, M.

    2014-12-01

    One of the main noise sources for future interferometric gravitational wave detectors will be the thermal fluctuations of the mirrors used as test masses. To reduce the effect of this noise without changing the mirror material, size and temperature, the use of Laguerre-Gauss (LG) modes has been proposed. In this work we report the first experimental results obtained with a Fabry-Pérot Michelson interferometer operated with Laguerre-Gauss LG33 as input mode and developed as a table-top prototype to test alignment and matching procedures, possible control issues and optical performances of the LG33 . Among the results obtained, we have demonstrated the degradation of the interferometer contrast of the LG33 with respect to the Gaussian beam, predicted by several previous simulations works and due to the degeneracy of LG modes having the same order. In addition, the observed contrast degradation for the LG33 as well as the interferometer optical properties have been explained using a numerical simulation.

  14. Purification and Characterization of White Laccase from the White-rot Fungus Panus conchatus

    Directory of Open Access Journals (Sweden)

    Pandeng Zhou

    2014-02-01

    Full Text Available Laccase is a kind of polyphenol oxidase having potential in applications for pulp bleaching, waste water treatment in mills, and removal of phenols in the food industry. The normal laccase from fungus or bacterial contains four copper atoms per protein molecular, imparting a blue color. Here it is reported that a white laccase is produced by a white rot fungus Panus conchatus from its solid-state fermentation. The activity center of this laccase is Cu2FeZn, which lacks the typical type-1 blue copper color. The polyacrylamide gel electrophoresis of purified laccase showed a main polypeptide with a molecular weight of about 60 kDa. Laccase substrate 2,6-dimethoxylphenol and others, such as syringaldazine, o-tolidine, and ABTS, were readily oxidized, among which the Km for syringaldazine was the highest. The isoelectric point of this enzyme was 3.6 and it was stable at temperatures below 45 °C over a wide range of pH (4-12.

  15. Essential oils on the control of stem and ear rot in maize

    Directory of Open Access Journals (Sweden)

    Glauco Antonio Teixeira

    2013-11-01

    Full Text Available Stem and ear rot caused by Stenocarpella maydis are responsible for severe losses in maize production. Treatment of seeds with fungicides may induce environmental damage. Hence, this study aimed to evaluate the effects of essential oils extracted from Cymbopogon winterianus, Thymus vulgaris, Cymbopogon citratus, Corymbia citriodora, Cinnamomum zeylanicum, and Syzygium aromaticum on the development of in vitro S. maydis. In addition, maize seeds were treated with these essential oils to determine their possible mode of action and effects. The oils from S. aromaticum, C. zeylanicum, and T. vulgaris inhibited fungal development at concentrations higher than 0.025%. The oils from S. aromaticum and C. zeylanicum showed seed germination rates of 89.0% and 84.5%, which were higher than that of the control. The oils from S. aromaticum and C. zeylanicum reduced the pathogen incidence in the seeds to 39.0% and 28.0%, respectively. Further, these oils as well as that from T. vulgaris produced lower reduction of maize stand. Scanning electron microscopy examination revealed that essential oils from S. aromaticum and T. vulgaris acted directly on the conidia, impeding germination. The findings suggest that the oils from S. aromaticum, C. zeylanicum, and T. vulgaris are potential alternatives for maize seed treatment in the control of S. maydis.

  16. Grape stalks as substrate for white rot fungi, lignocellulolytic enzyme production and dye decolorization.

    Science.gov (United States)

    Levin, Laura; Diorio, Luis; Grassi, Emanuel; Forchiassin, Flavia

    2012-01-01

    The aim of this work was to evaluate the potential of grape stalks, an agroindustrial waste, for growth and lignocellulolytic enzyme production via solid-state fermentation, using the following three white rot fungi: Trametes trogii, Stereum hirsutum and Coriolus antarcticus. The decolorization of several dyes by the above mentioned cultures was also investigated. Similar values of dry weight loss of the substrate were measured after 60 days (33-43 %). C. antarcticus produced the highest laccase and Mn-peroxidase activities (33.0 and 1.6 U/g dry solid). The maximum endoglucanase production was measured in S. hirsutum cultures (10.4 U/g), while the endoxylanase peak corresponded to T. trogii (14.6 U/g). The C. antarcticus/grape stalk system seems potentially competitive in bioremediation of textile processing effluents, attaining percentages of decolorization of 93, 86, 82, 82, 77, and 58% for indigo carmine, malachite green, azure B, remazol brilliant blue R, crystal violet and xylidine, respectively, in 5 h.

  17. Fiber optic anemometer based on silicon Fabry-Pérot interferometer

    Science.gov (United States)

    Liu, Guigen; Hou, Weilin; Qiao, Wei; Han, Ming

    2015-05-01

    Flowmeters have been finding vast applications in all kinds of industrial processes, such as process control, food quality surveillance, wind turbines, environment monitoring, etc. In this paper, we propose a new anemometer which consists of a Fabry-Pérot interferometer (FPI) implemented using a thin silicon mounted on the tip of an optical fiber. The anemometer takes advantage of the superior thermal and optical properties of silicon. Silicon is transparent to infrared wavelength, while it absorbs visible light. Thus, the silicon FPI can be heated by a beam injected from a red diode laser while the infrared signals go through it without any interference from the heating light. The heat loss from the silicon film will increase when the sensor is placed in stronger flow (wind), which induces a decrease in the optical path of the silicon FPI, which lead to blueshifts the output spectrum. A higher wind speed corresponds to a larger wavelength shift. By tuning the heating power, the response range and sensitivity of the anemometer is changed. Experimental results demonstrate that a wavelength shift -0.574 nm was observed for a wind speed of 4 m/s. Better sensitivity is to be expected when stronger heating applied. The proposed sensor also features simple structure, low cost and fast response.

  18. Transcriptional response of lignin-degrading enzymes to 17α-ethinyloestradiol in two white rots.

    Science.gov (United States)

    Přenosilová, L; Křesinová, Z; Amemori, A Slavíková; Cajthaml, T; Svobodová, K

    2013-05-01

    Fungal, ligninolytic enzymes have attracted a great attention for their bioremediation capabilities. A deficient knowledge of regulation of enzyme production, however, hinders the use of ligninolytic fungi in bioremediation applications. In this work, a transcriptional analyses of laccase and manganese peroxidase (MnP) production by two white rots was combined with determination of pI of the enzymes and the evaluation of 17α-ethinyloestradiol (EE2) degradation to study regulation mechanisms used by fungi during EE2 degradation. In the cultures of Trametes versicolor the addition of EE2 caused an increase in laccase activity with a maximum of 34.2 ± 6.7 U g⁻¹ of dry mycelia that was observed after 2 days of cultivation. It corresponded to a 4.9 times higher transcription levels of a laccase-encoding gene (lacB) that were detected in the cultures at the same time. Simultaneously, pI values of the fungal laccases were altered in response to the EE2 treatment. Like T. versicolor, Irpex lacteus was also able to remove 10 mg l⁻¹ EE2 within 3 days of cultivation. While an increase to I. lacteus MnP activity and MnP gene transcription levels was observed at the later phase of the cultivation. It suggests another metabolic role of MnP but EE2 degradation.

  19. Microbiota Characterization of Compost Using Omics Approaches Opens New Perspectives for Phytophthora Root Rot Control.

    Science.gov (United States)

    Blaya, Josefa; Marhuenda, Frutos C; Pascual, Jose A; Ros, Margarita

    2016-01-01

    Phytophthora root rot caused by Phytophthora nicotianae is an economically important disease in pepper crops. The use of suppressive composts is a low environmental impact method for its control. Although attempts have been made to reveal the relationship between microbiota and compost suppressiveness, little is known about the microorganisms associated with disease suppression. Here, an Ion Torrent platform was used to assess the microbial composition of composts made of different agro-industrial waste and with different levels of suppressiveness against P. nicotianae. Both bacterial and fungal populations responded differently depending on the chemical heterogeneity of materials used during the composting process. High proportions (67-75%) of vineyard pruning waste were used in the most suppressive composts, COM-A and COM-B. This material may have promoted the presence of higher relative abundance of Ascomycota as well as higher microbial activity, which have proved to be essential for controlling the disease. Although no unique fungi or bacteria have been detected in neither suppressive nor conducive composts, relatively high abundance of Fusarium and Zopfiella were found in compost COM-B and COM-A, respectively. To the best of our knowledge, this is the first work that studies compost metabolome. Surprisingly, composts and peat clustered together in principal component analysis of the metabolic data according to their levels of suppressiveness achieved. This study demonstrated the need for combining the information provided by different techniques, including metagenomics and metametabolomics, to better understand the ability of compost to control plant diseases.

  20. Biochemical characterization and transcriptional analysis of the epoxide hydrolase from white-rot fungus Phanerochaete chrysosporium

    Institute of Scientific and Technical Information of China (English)

    Nian Li; Yizheng Zhang; Hong Feng

    2009-01-01

    The white-rot basidiomycetes Phanerochaete chrysosporium is a model fungus used to investigate the sec-ondary metabolism and lignin degradation. Genomic sequencing reveals the presence of at least 18 genes encoding putative epoxide hydrolases (EHs). One cDNA encoding EH (designated as PchEHA) was cloned and expressed in Escherichia coli. Transcriptional analysis demonstrated that the transcripts of PchEHA could be detected under the ligninolytic and nonligninolytic con-ditions as well as amended with anthracene. The recom-binant enzyme exhibits broad hydrolytic activity toward several racemic epoxides including styrene oxide, epichlorohydrin, and 1,2-epoxybutane, but with different specificity. Using racemic styrene oxide as the substrate, the optimal pH and temperature are pH 9.0 and 40℃, respectively. The enzyme is not sensitive to EDTA, and is inhibited by H2O2, and several metal ions including Zn2+, Cd2+, and Hg2+ at various extents. Several organic cosoivents including acetone, dimethylsulfoxide, formamide, glycerol and ethanol at 10% (v/v) cause slight or no inhibition of the hydrolytic reaction. More importantly, the recombinant enzyme displays distinct enantioselective preference to several chiral epoxides. The enzyme showed good enantioselec-tivity toward chiral styrene oxide with preferential hydrolysis of (R)-enantiomer. PchEHA is likely a novel soluble EH based on the sequence analysis and catalytic properties, and is a great potential biocatalyst for the preparation of enantiopure styrene oxide in racemic kinetic resolution.