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Sample records for attaleinae arecaceae identifies

  1. Phylogenetic analysis of seven WRKY genes across the palm subtribe Attaleinae (Arecaceae [corrected] identifies Syagrus as sister group of the coconut.

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    Alan W Meerow

    Full Text Available BACKGROUND: The Cocoseae is one of 13 tribes of Arecaceae subfam. Arecoideae, and contains a number of palms with significant economic importance, including the monotypic and pantropical Cocos nucifera L., the coconut, the origins of which have been one of the "abominable mysteries" of palm systematics for decades. Previous studies with predominantly plastid genes weakly supported American ancestry for the coconut but ambiguous sister relationships. In this paper, we use multiple single copy nuclear loci to address the phylogeny of the Cocoseae subtribe Attaleinae, and resolve the closest extant relative of the coconut. METHODOLOGY/PRINCIPAL FINDINGS: We present the results of combined analysis of DNA sequences of seven WRKY transcription factor loci across 72 samples of Arecaceae tribe Cocoseae subtribe Attaleinae, representing all genera classified within the subtribe, and three outgroup taxa with maximum parsimony, maximum likelihood, and Bayesian approaches, producing highly congruent and well-resolved trees that robustly identify the genus Syagrus as sister to Cocos and resolve novel and well-supported relationships among the other genera of the Attaleinae. We also address incongruence among the gene trees with gene tree reconciliation analysis, and assign estimated ages to the nodes of our tree. CONCLUSIONS/SIGNIFICANCE: This study represents the as yet most extensive phylogenetic analyses of Cocoseae subtribe Attaleinae. We present a well-resolved and supported phylogeny of the subtribe that robustly indicates a sister relationship between Cocos and Syagrus. This is not only of biogeographic interest, but will also open fruitful avenues of inquiry regarding evolution of functional genes useful for crop improvement. Establishment of two major clades of American Attaleinae occurred in the Oligocene (ca. 37 MYBP in Eastern Brazil. The divergence of Cocos from Syagrus is estimated at 35 MYBP. The biogeographic and morphological congruence

  2. When species trees collide: phylogeny and historical biogeography of the cocosoid palms (Arecaceae, Arecoideae, Cocoseae) inferred from sequences of six WRKY gene family loci

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    Arecaceae tribe Cocoseae is the most economically important tribe of palms, wherein both coconut and African oil palm are classified. It is mostly represented in the Neotropics, with one and two genera endemic to South Africa and Madagascar, respectively. Three subtribes are recognized: Attaleinae...

  3. The palm family (Arecaceae)

    DEFF Research Database (Denmark)

    Nadot, Sophie; Alapetite, Elodie; Baker, William J.

    2016-01-01

    Among the 416 angiosperm families, palms (Arecaceae) are striking in possessing almost all possible combinations of hermaphroditic and/or unisexual flowers, making them a particularly interesting subject for studies of the evolution of plant sexuality. The purpose of this review is to highlight...

  4. Phylogenetic analysis of seven WRKY genes across the palm subtribe Attaleinae (Areceaceae) identifies Syagrus as sister to the coconut

    Science.gov (United States)

    The origins of the coconut (Cocos nucifera) have been one of the "abominable mysteries" of palm systematics for decades. Previous studies with predominantly plastid genes have indicated an American ancestry for the coconut but with weak support and ambiguous sister relationships. We used primers d...

  5. Genetic diversity and differentiation of Pseudophoenix (Arecaceae) in Hispaniola

    Science.gov (United States)

    Technical Abstract Pseudophoenix ekmanii Burret, P. lediniana Read, and P. vinifera (Mart.) Becc. (Arecaceae) are endemic to Hispaniola. The more wide-ranging P. sargentii H.Wendl. ex Sarg. occurs on this island as well. The population genetic diversity and structure of Pseudophoenix was investigate...

  6. The complete plastome of macaw palm [Acrocomia aculeata (Jacq.) Lodd. ex Mart.] and extensive molecular analyses of the evolution of plastid genes in Arecaceae.

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    de Santana Lopes, Amanda; Gomes Pacheco, Túlio; Nimz, Tabea; do Nascimento Vieira, Leila; Guerra, Miguel P; Nodari, Rubens O; de Souza, Emanuel Maltempi; de Oliveira Pedrosa, Fábio; Rogalski, Marcelo

    2018-01-16

    The plastome of macaw palm was sequenced allowing analyses of evolution and molecular markers. Additionally, we demonstrated that more than half of plastid protein-coding genes in Arecaceae underwent positive selection. Macaw palm is a native species from tropical and subtropical Americas. It shows high production of oil per hectare reaching up to 70% of oil content in fruits and an interesting plasticity to grow in different ecosystems. Its domestication and breeding are still in the beginning, which makes the development of molecular markers essential to assess natural populations and germplasm collections. Therefore, we sequenced and characterized in detail the plastome of macaw palm. A total of 221 SSR loci were identified in the plastome of macaw palm. Additionally, eight polymorphism hotspots were characterized at level of subfamily and tribe. Moreover, several events of gain and loss of RNA editing sites were found within the subfamily Arecoideae. Aiming to uncover evolutionary events in Arecaceae, we also analyzed extensively the evolution of plastid genes. The analyses show that highly divergent genes seem to evolve in a species-specific manner, suggesting that gene degeneration events may be occurring within Arecaceae at the level of genus or species. Unexpectedly, we found that more than half of plastid protein-coding genes are under positive selection, including genes for photosynthesis, gene expression machinery and other essential plastid functions. Furthermore, we performed a phylogenomic analysis using whole plastomes of 40 taxa, representing all subfamilies of Arecaceae, which placed the macaw palm within the tribe Cocoseae. Finally, the data showed here are important for genetic studies in macaw palm and provide new insights into the evolution of plastid genes and environmental adaptation in Arecaceae.

  7. Morphologic characterization of Butia microspadix Burret (Arecaceae) phitoliths

    OpenAIRE

    Pereira, Janaina Silva Rossi; UTFPR campus Campo Mourão; Parolin, Mauro; FECILCAM; Monteiro, Mayara dos Reis; FECILCAM/UEM; Caxambu, Marcelo Galeazzi; UTFPR; Rasbold, Giliane Géssica; UTFPR

    2013-01-01

    Phytoliths are micrometric bodies of opal, which was deposited between the cells of plant tissues in some species of the Plantae Kingdom. These precipitations are more abundant in the family Poaceae, but it’s significant in other plant families, as Arecaceae, for example. The morphological description of the phytoliths Butia microspadix Burret’s (Butiazinho-do-campo) is important to aid in paleoenvironmental reconstructions of Campos Gerais, Paraná, Brasil. Globular echinate was the predomina...

  8. A família Arecaceae (palmeiras no município de Lavras, MG

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    Joyce de Almeida Alves

    2010-06-01

    Full Text Available This work identified the species of Arecaceae that occur in the County of Lavras, MG and elaborated a dichotomousanalytical key for the species found. The survey was carried out in two stages: (1 survey the main squares and gardens (municipaland privately owned; (2 survey of the species close to the margins of the Lavras County federal, state and municipal highways. Thepalm trees found were photographed and identified in loco or through herbarium survey and related literature. Thirty nine specieswere found, 5 of which are native, distributed in 25 genera. The genera with the higher numbers of species were Syagrus (6, Dypsis(3 and Roystonea (3, making up 31.58% of the species. The native species Acrocomia aculeata and Syagrus romanzoffiana occurin most edges of the travelled roads. In the survey done in the main squares and gardens, the species of the genus Dypsis, Syagrusromanzoffina, Phoenix roebelenii and Caryota urens stood out.

  9. Co-occurrence and community assembly in Amazonian palms (Arecaceae)

    DEFF Research Database (Denmark)

    Eiserhardt, Wolf L.; Balslev, Henrik; Kristiansen, Thea

    Palms (Arecaceae) are a distinctive, diverse and ecologically important element of tropical rainforest. Often numerous palm species co-occur locally in "palm communities" that span all strata of the forest. In South America, the palm family has a centre of diversity in the western Amazon basin...... on phylogenetic assemblage structure. The results indicate that multiple drivers interact to determine palm diversity patterns in lowland rainforests. A major future challenge is adding the effect of plant-plant, plant-animal, and plant-pathogen interactions to the equation....

  10. Butia spp. (Arecaceae) LC-MS-Based Metabolomics for Species and Geographical Origin Discrimination.

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    Hoffmann, Jessica Fernanda; Carvalho, Ivan Ricardo; Barbieri, Rosa Lia; Rombaldi, Cesar Valmor; Chaves, Fabio Clasen

    2017-01-18

    The metabolic variability of fruit from Butia spp. (Arecaceae) genotypes from different geographical locations was characterized using untargeted metabolomics by liquid chromatography-mass spectrometry (LC-MS) followed by multivariate data analyses. Principal component analysis (PCA) and partial least-squares discriminant analysis (PLS-DA) from LC-MS data sets showed a clear distinction among Butia catarinensis, Butia odorata, Butia paraguayensis, and Butia yatay. The major metabolites that contributed to species discrimination were primary metabolites including sugars and organic acids and specialized metabolites such as tetrahydroxy-trans-stilbene and rutin. B. odorata fruit from Tapes, RS, Brazil, showed a high content of organic acids and flavonoids, whereas B. odorata fruits from Capão do Leão, RS, Brazil, showed a high sugar content. The results demonstrate that LC-ESI-qToF-MS-based metabolic profiling coupled with chemometric analysis can be used to discriminate among Butia species and between geographical origins of B. odorata and to identify primary and specialized metabolites responsible for the discrimination.

  11. A comparative study of nutritional composition and potential use of some underutilized tropical fruits of Arecaceae

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    RAQUEL B. SILVA

    2015-09-01

    Full Text Available In this study, pulp and kernel of fruits from six Arecaceae species were subjected to proximate analysis, fatty acid composition and total carotenoid content analysis. The species with the highest carbohydrate, lipid and protein values were Ptychosperma macarthurii(70.1 g/100 g in the kernel, Syagrus cearensis(40.6 g/100 g in the kernel, andS. coronata(20.6 g/100 g in the pulp. The ash content ranged from 0.61 to 7.51 g/100 g. Lauric, palmitic, and oleic acids were the major fatty acids identified. The total carotenoid contents and retinol activity equivalents were highest in the Pinanga kuhlii (180.3 µg/g andAcrocomia intumescens (138.0 µg/g pulp oils. Retinol activity equivalents varied between the investigated species (456 to 1515 μg RAE/100 g. Native species such as A. intumescens, S. coronata, and S. cearensis are good sources of fresh food for the underserved populations that inhabit poorly developed areas such as the semi-arid region of Brazil. P. macarthurii, an exotic species, is an excellent source of ash and carotenoids, demonstrating its potential both as a food source and as bioactive compounds. Pulp and kernel ofA. intumescens,could be a good alternative feedstock for soap and biodiesel production, respectively.

  12. A comparative study of nutritional composition and potential use of some underutilized tropical fruits of Arecaceae.

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    Silva, Raquel B; Silva-Júnior, Edvaldo V; Rodrigues, Laís C; Andrade, Laise H C; da Silva, Suzene I; Harand, Wolfgang; Oliveira, Antonio F M

    2015-09-01

    In this study, pulp and kernel of fruits from six Arecaceae species were subjected to proximate analysis, fatty acid composition and total carotenoid content analysis. The species with the highest carbohydrate, lipid and protein values were Ptychosperma macarthurii(70.1 g/100 g in the kernel), Syagrus cearensis(40.6 g/100 g in the kernel), andS. coronata(20.6 g/100 g in the pulp). The ash content ranged from 0.61 to 7.51 g/100 g. Lauric, palmitic, and oleic acids were the major fatty acids identified. The total carotenoid contents and retinol activity equivalents were highest in the Pinanga kuhlii (180.3 µg/g) and Acrocomia intumescens (138.0 µg/g) pulp oils. Retinol activity equivalents varied between the investigated species (456 to 1515 μg RAE/100 g). Native species such as A. intumescens, S. coronata, and S. cearensis are good sources of fresh food for the underserved populations that inhabit poorly developed areas such as the semi-arid region of Brazil. P. macarthurii, an exotic species, is an excellent source of ash and carotenoids, demonstrating its potential both as a food source and as bioactive compounds. Pulp and kernel ofA. intumescens,could be a good alternative feedstock for soap and biodiesel production, respectively.

  13. Landscape genetics, historical isolation and cross-Andean gene flow in the wax palm, Ceroxylon echinulatum (Arecaceae)

    DEFF Research Database (Denmark)

    Trénel, P.; Hansen, Michael Møller; Nordmand, S.

    2008-01-01

    and landscape genetics of the Andean wax palm Ceroxylon echinulatum (Arecaceae) that occurs in two narrow bands of montane forests on each side of the Andes in Ecuador and northeastern Peru. First, we tested the hypothesis of C. echinulatum being a geographic cline species crossing the Andes in the Amotape......-Huancabamba zone (AHZ) of southern Ecuador/northern Peru, as indicated by observations on fruit morphology. Second, we assessed the timeframe of cross-Andean divergence, and third, we investigated the impact of contemporary and historical landscape features on observed spatio-genetic patterns. Individual......-based Bayesian clustering (BC) identified a northeastern, southeastern, southwestern, and northwestern cluster, with areas of genetic discontinuity coinciding with the Andes and the Giron-Paute deflection. F-statistics derived from BC suggested an east-to-west dispersal history. Population-based analyses...

  14. A dated phylogeny complements macroecological analysis to explain the diversity patterns in Geonoma (Arecaceae)

    DEFF Research Database (Denmark)

    Roncal, Julissa; Overgaard, Anne Blach; Borchsenius, Finn

    2011-01-01

    pattern. To test for a time-for-diversification effect, we correlated four different species richness measures with the diversification time of the earliest large lineage that is characteristic of each cluster. In support of this hypothesis, we found that geographic areas with higher richness contained...... in the Geonoma phylogeny. Finally, we used a dated phylogeny to assess whether species richness within the floristic clusters was constrained by a specific historical biogeographic driver, namely time-for-diversification. A cluster analysis identified six spatially coherent floristic clusters, four of which were......Integrating phylogenetic data into macroecological studies of biodiversity patterns may complement the information provided by present-day spatial patterns. In the present study, we used range map data for all Geonoma (Arecaceae) species to assess whether Geonoma species composition forms spatially...

  15. The genus Attalea (Arecaceae of Bolivia: regional ecologic system affinities

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    Mónica Moraes R.

    2017-10-01

    Full Text Available The documentation of the Neotropical species of the Arecaceae family, based on the recent contributions to its taxonomy and its relationship with natural landscapes, updates the spatial patterns to which they adapt in their range of distribution. In this case 121 records of specimens of the 11 species of the genus Attalea of Bolivia and their relationship with 30 ecological systems that approximate their scope of distribution at regional level are released. To this end, the geographical coordinates were systematized, verified and corrected. Localities of all the specimens collected from the genus Attalea in order to compare them with ecological systems, using the ArgGis tools. We then elaborate a dendrogram (species vs. ecological systems using the minimum distance method in the R program. The analysis of the relation of the species with the ecological systems highlights a species that does not compose to the southwest amazon: A. eichleri and that is native to ecological systems of the Cerrado. Among the SW Amazonian Attalea species, A. blepharopus (endemic to Bolivia is isolated from the others and the rest subgroup species according to their presence in forests and savannas, in addition to the subandean and alluvial, as it is for A. princeps, which is found in 17 systems (57%. Eight species of Attalea are common with Peru and 10 with Brazil. It is important to relate the hierarchical grouping of the Attalea species with ecological systems in function of landscape dynamics to document their space patterns and also for their conservation.

  16. Cocos nucifera (L.) (Arecaceae): A phytochemical and pharmacological review.

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    Lima, E B C; Sousa, C N S; Meneses, L N; Ximenes, N C; Santos Júnior, M A; Vasconcelos, G S; Lima, N B C; Patrocínio, M C A; Macedo, D; Vasconcelos, S M M

    2015-11-01

    Cocos nucifera (L.) (Arecaceae) is commonly called the "coconut tree" and is the most naturally widespread fruit plant on Earth. Throughout history, humans have used medicinal plants therapeutically, and minerals, plants, and animals have traditionally been the main sources of drugs. The constituents of C. nucifera have some biological effects, such as antihelminthic, anti-inflammatory, antinociceptive, antioxidant, antifungal, antimicrobial, and antitumor activities. Our objective in the present study was to review the phytochemical profile, pharmacological activities, and toxicology of C. nucifera to guide future preclinical and clinical studies using this plant. This systematic review consisted of searches performed using scientific databases such as Scopus, Science Direct, PubMed, SciVerse, and Scientific Electronic Library Online. Some uses of the plant were partially confirmed by previous studies demonstrating analgesic, antiarthritic, antibacterial, antipyretic, antihelminthic, antidiarrheal, and hypoglycemic activities. In addition, other properties such as antihypertensive, anti-inflammatory, antimicrobial, antioxidant, cardioprotective, antiseizure, cytotoxicity, hepatoprotective, vasodilation, nephroprotective, and anti-osteoporosis effects were also reported. Because each part of C. nucifera has different constituents, the pharmacological effects of the plant vary according to the part of the plant evaluated.

  17. Cocos nucifera (L. (Arecaceae: A phytochemical and pharmacological review

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    E.B.C. Lima

    2015-01-01

    Full Text Available Cocos nucifera (L. (Arecaceae is commonly called the “coconut tree” and is the most naturally widespread fruit plant on Earth. Throughout history, humans have used medicinal plants therapeutically, and minerals, plants, and animals have traditionally been the main sources of drugs. The constituents of C. nucifera have some biological effects, such as antihelminthic, anti-inflammatory, antinociceptive, antioxidant, antifungal, antimicrobial, and antitumor activities. Our objective in the present study was to review the phytochemical profile, pharmacological activities, and toxicology of C. nucifera to guide future preclinical and clinical studies using this plant. This systematic review consisted of searches performed using scientific databases such as Scopus, Science Direct, PubMed, SciVerse, and Scientific Electronic Library Online. Some uses of the plant were partially confirmed by previous studies demonstrating analgesic, antiarthritic, antibacterial, antipyretic, antihelminthic, antidiarrheal, and hypoglycemic activities. In addition, other properties such as antihypertensive, anti-inflammatory, antimicrobial, antioxidant, cardioprotective, antiseizure, cytotoxicity, hepatoprotective, vasodilation, nephroprotective, and anti-osteoporosis effects were also reported. Because each part of C. nucifera has different constituents, the pharmacological effects of the plant vary according to the part of the plant evaluated.

  18. Neither insects nor wind: ambophily in dioecious Chamaedorea palms (Arecaceae).

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    Rios, L D; Fuchs, E J; Hodel, D R; Cascante-Marín, A

    2014-07-01

    Pollination of Neotropical dioecious trees is commonly related to generalist insects. Similar data for non-tree species with separated genders are inconclusive. Recent studies on pollination of dioecious Chamaedorea palms (Arecaceae) suggest that species are either insect- or wind-pollinated. However, the wide variety of inflorescence and floral attributes within the genus suggests mixed pollination mode involving entomophily and anemophily. To evaluate this hypothesis, we studied the pollination of Chamaedorea costaricana, C. macrospadix, C. pinnatifrons and C. tepejilote in two montane forests in Costa Rica. A complementary morphological analysis of floral traits was carried out to distinguish species groups within the genus according to their most probable pollination mechanism. We conducted pollinator exclusion experiments, field observations on visitors to pistillate and staminate inflorescences, and trapped airborne pollen. A cluster analysis using 18 floral traits selected for their association with wind and insect pollination syndromes was carried out using 52 Chamaedorea species. Exclusion experiments showed that both wind and insects, mostly thrips (Thysanoptera), pollinated the studied species. Thrips used staminate inflorescences as brood sites and pollinated pistillate flowers by deception. Insects caught on pistillate inflorescences transported pollen, while traps proved that pollen is wind-borne. Our empirical findings clearly suggest that pollination of dioecious Chamaedorea palms is likely to involve both insects and wind. A cluster analysis showed that the majority of studied species have a combination of floral traits that allow for both pollination modes. Our pollination experiments and morphological analysis both suggest that while some species may be completely entomophilous or anemophilous, ambophily might be a common condition within Chamaedorea. Our results propose a higher diversity of pollination mechanisms of Neotropical dioecious

  19. Testing the water-energy theory on American palms (Arecaceae using geographically weighted regression.

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    Wolf L Eiserhardt

    Full Text Available Water and energy have emerged as the best contemporary environmental correlates of broad-scale species richness patterns. A corollary hypothesis of water-energy dynamics theory is that the influence of water decreases and the influence of energy increases with absolute latitude. We report the first use of geographically weighted regression for testing this hypothesis on a continuous species richness gradient that is entirely located within the tropics and subtropics. The dataset was divided into northern and southern hemispheric portions to test whether predictor shifts are more pronounced in the less oceanic northern hemisphere. American palms (Arecaceae, n = 547 spp., whose species richness and distributions are known to respond strongly to water and energy, were used as a model group. The ability of water and energy to explain palm species richness was quantified locally at different spatial scales and regressed on latitude. Clear latitudinal trends in agreement with water-energy dynamics theory were found, but the results did not differ qualitatively between hemispheres. Strong inherent spatial autocorrelation in local modeling results and collinearity of water and energy variables were identified as important methodological challenges. We overcame these problems by using simultaneous autoregressive models and variation partitioning. Our results show that the ability of water and energy to explain species richness changes not only across large climatic gradients spanning tropical to temperate or arctic zones but also within megathermal climates, at least for strictly tropical taxa such as palms. This finding suggests that the predictor shifts are related to gradual latitudinal changes in ambient energy (related to solar flux input rather than to abrupt transitions at specific latitudes, such as the occurrence of frost.

  20. Microsatellite loci for tucumã of Amazonas (Astrocaryum aculeatum) and amplification in other Arecaceae.

    Science.gov (United States)

    Ramos, Santiago L Ferreyra; de Macêdo, Jeferson L Vasconcelos; Lopes, Maria T Gomes; Batista, Jacqueline S; Formiga, Kyara M; da Silva, Perla Pimentel; Saulo-Machado, Antonio C; Veasey, Elizabeth Ann

    2012-12-01

    Microsatellite loci were developed for tucumã of Amazonas (Astrocaryum aculeatum), and cross-species amplification was performed in six other Arecaceae, to investigate genetic diversity and population structure and to provide support for natural populations management. • Fourteen microsatellite loci were isolated from a microsatellite-enriched genomic library and used to characterize two wild populations of tucumã of Amazonas (Manaus and Manicoré cities). The investigated loci displayed high polymorphism for both A. aculeatum populations, with a mean observed heterozygosity of 0.498. Amplification rates ranging from 50% to 93% were found for four Astrocaryum species and two additional species of Arecaceae. • The information derived from the microsatellite markers developed here provides significant gains in conserved allelic richness and supports the implementation of several molecular breeding strategies for the Amazonian tucumã.

  1. Use and Diversity of Palm (Arecaceae) Resources in Central Western Brazil

    OpenAIRE

    Renata Corrêa Martins; Tarciso de Sousa Filgueiras; Ulysses Paulino de Albuquerque

    2014-01-01

    Arecaceae Schultz-Sch. (Palmae Juss.), a member of the monocotyledon group, is considered one of the oldest extant angiosperm families on Earth. This family is highly valuable because of its species diversity, its occurrence in a wide range of habitats, and its status as an integral part of the culture and the family-based economy of many traditional and nontraditional communities. The main objectives of this study were to perform an ethnobotanical study involving these palms and a “Quilombol...

  2. Areca catechu L. (Arecaceae): a review of its traditional uses, botany, phytochemistry, pharmacology and toxicology.

    Science.gov (United States)

    Peng, Wei; Liu, Yu-Jie; Wu, Na; Sun, Tao; He, Xiao-Yan; Gao, Yong-Xiang; Wu, Chun-Jie

    2015-04-22

    Areca catechu L. (Arecaceae), widely distributed in South and Southeast Asia, is a popular traditional herbal medicine that can be chewed for the purpose of dispersing accumulated fluid in the abdominal cavity and killing worms. The present paper aims to provide an up-to-date review on the traditional uses and advances in the botany, phytochemistry, pharmacology and toxicology of this plant. Furthermore, the possible trends and a perspective for future research of this plant are also discussed. A literature search was performed on A. catechu based on classic books of herbal medicine, PhD. and MSc. dissertations, government reports, the state and local drug standards, scientific databases including Pubmed, SciFinder, Scopus, the Web of Science, Google Scholar, and others. Various types of information regarding this plant are discussed in corresponding parts of this paper. In addition, perspectives for possible future studies of A. catechu are discussed. The seeds of A. catechu (areca nut) have been widely used in clinical practice in China, India and other South and Southeast Asian Countries. Currently, over 59 compounds have been isolated and identified from A. catechu, including alkaloids, tannins, flavones, triterpenes, steroids, and fatty acids. The extracts and compounds isolated from A. catechu have many pharmacological activities. These include antiparasitic effects, anti-depressive effects, anti-fatigue effects, antioxidant effects, antibacterial and antifungal effects, antihypertensive effects, anti-inflammatory and analgesic effects, anti-allergic effects, the promotion of digestive functions, suppression of platelet aggregation, regulatory effects on blood glucose and lipids, etc. Although arecoline is the primary active constituent of A. catechu, it is also the primary toxic compound. The main toxicities of arecoline are the promotion of oral submucosal fibrosis (OSF) and cytotoxic effects on normal human cells, which involve inducing apoptosis. As an

  3. Potencial nutricional de seis espécies de Arecaceae ocorrentes em Pernambuco, Nordeste do Brasil

    OpenAIRE

    Silva, Raquel Barbosa da

    2012-01-01

    Frutos de seis espécies de Arecaceae foram analisados visando determinar o valor nutricional, o perfil de ácidos graxos e os carotenoides totais. A polpa e a amêndoa de Pinanga kuhlii, Ptychosperma macarthurii, Veitchia merrillii (exóticas), Acrocomia intumescens, Syagrus coronata e S. cearensis (nativas) apresentaram valor nutritivo diversificado, com destaque para Syagrus coronata, que apresentou na amêndoa 33,43% de carboidratos, 30,04% de lipídios e 20,64% de proteínas. Acrocomia intumesc...

  4. A comparative study of nutritional composition and potential use of some underutilized tropical fruits of Arecaceae

    OpenAIRE

    SILVA,RAQUEL B.; SILVA-JÚNIOR,EDVALDO V.; RODRIGUES,LAÍS C.; ANDRADE,LAISE H.C.; SILVA,SUZENE I. DA; HARAND,WOLFGANG; OLIVEIRA,ANTONIO F.M.

    2015-01-01

    In this study, pulp and kernel of fruits from six Arecaceae species were subjected to proximate analysis, fatty acid composition and total carotenoid content analysis. The species with the highest carbohydrate, lipid and protein values were Ptychosperma macarthurii(70.1 g/100 g in the kernel), Syagrus cearensis(40.6 g/100 g in the kernel), andS. coronata(20.6 g/100 g in the pulp). The ash content ranged from 0.61 to 7.51 g/100 g. Lauric, palmitic, and oleic acids were the major fatty acids id...

  5. Phylogenetic analysis of Attalea (Arecaceae): insights on the historical biogeography of a recently diversified Neotropical plant group

    Science.gov (United States)

    Technical Abstract Here we present a dated phylogenetic tree of the neotropical palm genus Attalea (Arecaceae). We used six orthologs from the nuclear WRKY gene family across 98 accessions to address relationships among species and biogeographic hypotheses. Here we found that the formerly recognized...

  6. Phylogeny and historical biogeography of the cocosoid palms (Arecaceae, Arecoideae, Cocoseae) inferred from sequences of six WRKY gene family loci

    Science.gov (United States)

    Arecaceae tribe Cocoseae is the most economically important tribe of palms, including both coconut and African oil palm. It is mostly represented in the Neotropics, with one and two genera endemic to South Africa and Madagascar, respectively. Using primers for six single copy WRKY gene family loci...

  7. Study of the Thermal Properties of Raffia Bamboo Vinifera L. Arecaceae

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    E. Foadieng

    2017-01-01

    Full Text Available Raffia is a kind of fast-growing palm tree, from the family of Arecaceae, encountered in marshy areas and along rivers. In this study, the “Raffia Bamboo” is the stalk of a palm, made of a fragile marrow inside a thin shell, smooth and hard to protect the latter. In our region, this material is widely used to build all the low-cost traditional houses and furniture, to make granaries storage of dry products, to build chicken coops, to make decoration. Thus, various jobs are organized around this material, with the fight against poverty. To our knowledge, information on its thermal properties is almost nonexistent. The experimental determination of the transverse thermal properties of the dry shell, the dry marrow, and the whole dry bamboo helped to find, for each, a specific heat, a thermal diffusivity, a thermal conductivity, and finally a thermal effusivity. From the analysis of results, we deduce that the thermal properties of raffia bamboo vinifera L. Arecacea make it a very good thermal insulator.

  8.   Diversity and composition of palm communities (Arecaceae) in Quintana Roo Mexico

    DEFF Research Database (Denmark)

    Alvarado, Arturo A.; Calvo, Luz M.; Duno, Rodrigo

      We compared composition and diversity of palm (Arecaceae) communities in three forest types along a gradient from dry deciduous, over intermediate to wet evergreen forest in Quintana Roo, Mexico. In forty-nine 5×500-m transects, we counted 52,612 individuals representing 14 species in 11 genera...... to understanding diversity changes along gradients. Both species richness and overall palm abundance increased from north to south, which correlates with higher precipitation, deeper soils, fewer ground rocks and a higher forest cover.......  We compared composition and diversity of palm (Arecaceae) communities in three forest types along a gradient from dry deciduous, over intermediate to wet evergreen forest in Quintana Roo, Mexico. In forty-nine 5×500-m transects, we counted 52,612 individuals representing 14 species in 11 genera....... Within the 49 transects we found monodominance in six. The most abundant palms were Cryosophila stauracantha, Thrinax radiata and Coccothrinax readii and the least abundant were Bactris major and Gaussia maya. Thrinax radiata was the most abundant species in the northern deciduous and central...

  9. The chloroplast DNA locus psbZ-trnfM as a potential barcode marker in Phoenix L. (Arecaceae

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    Marco Ballardini

    2013-12-01

    Full Text Available The genus Phoenix (Arecaceae comprises 14 species distributed from Cape Verde Islands to SE Asia. It includes the economically important species Phoenix dactylifera. The paucity of differential morphological and anatomical useful characters, and interspecific hybridization, make identification of Phoenix species difficult. In this context, the development of reliable DNA markers for species and hybrid identification would be of great utility. Previous studies identified a 12 bp polymorphic chloroplast minisatellite in the trnG(GCC-trnfM(CAU spacer, and showed its potential for species identification in Phoenix. In this work, in order to develop an efficient DNA barcode marker for Phoenix, a longer cpDNA region (700 bp comprising the mentioned minisatellite, and located between the psbZ and trnfM(CAU genes, was sequenced. One hundred and thirty-six individuals, representing all Phoenix species except P. andamanensis, were analysed. The minisatellite showed 2-7 repetitions of the 12 bp motif, with 1-3 out of seven haplotypes per species. Phoenix reclinata and P. canariensis had species-specific haplotypes. Additional polymorphisms were found in the flanking regions of the minisatellite, including substitutions, indels and homopolymers. All this information allowed us to identify unambiguously eight out of the 13 species, and overall 80% of the individuals sampled. Phoenix rupicola and P. theophrasti had the same haplotype, and so had P. atlantica, P. dactylifera, and P. sylvestris (the “date palm complex” sensu Pintaud et al. 2013. For these species, additional molecular markers will be required for their unambiguous identification. The psbZ-trnfM(CAU region therefore could be considered as a good basis for the establishment of a DNA barcoding system in Phoenix, and is potentially useful for the identification of the female parent in Phoenix hybrids.

  10. Use and Diversity of Palm (Arecaceae) Resources in Central Western Brazil

    Science.gov (United States)

    Martins, Renata Corrêa; Filgueiras, Tarciso de Sousa

    2014-01-01

    Arecaceae Schultz-Sch. (Palmae Juss.), a member of the monocotyledon group, is considered one of the oldest extant angiosperm families on Earth. This family is highly valuable because of its species diversity, its occurrence in a wide range of habitats, and its status as an integral part of the culture and the family-based economy of many traditional and nontraditional communities. The main objectives of this study were to perform an ethnobotanical study involving these palms and a “Quilombola” (Maroon) community in the municipality of Cavalcante, GO, Brazil. The variables gender, age, and formal schooling had no influence on the number of species recognized and used by the Kalungas. Ethnobotanical studies based on traditional knowledge in addition to use and management of palms are fundamental aspects for planning and appliance of public policies directed to the use of natural resources and improvement of life quality. PMID:24772040

  11. Studies on the Ecology, Biogeography and Evolution of Palms (Arecaceae) with Focus on the Americas

    DEFF Research Database (Denmark)

    Eiserhardt, Wolf L.

    and evolutionary processes. These topics fall into four categories: (i) Previous empirical evidence on the factors influencing palm species distributions, community composition, and species richness was summarised in a hierarchical scale framework. The effects of different components of the abiotic environment......The palm family (Arecaceae) increasingly serves as a model system to study the ecology and evolution of tropical ecosystems. This volume covers a wide range of topics in the areas of palm community ecology, macroecology, biogeography, and phylogeny, with a focus on the bridge between ecological......, biotic interactions, and dispersal are integrally dependent on spatiotemporal scale. Historical, including evolutionary factors are clearly important for palm distributions and diversity. (ii) Broad-scale patterns of palm species richness and phylogenetic turnover were studied across the Americas...

  12. Evaluación detallada de la distribución de Astrocaryum sec. Huicungo (Arecaceae) en Perú

    OpenAIRE

    Kahn, Francis; IRD, UMR DIADE, DYNADIV, Casilla 18-1209, Lima 18, Perú; Millán, Betty; Museo de Historia Natural, Universidad Nacional Mayor de San Marcos, Av. Arenales 1256, Jesús María, Lima 11, Perú; Pintaud, Jean-Christophe; IRD, UMR DIADE, DYNADIV, Casilla 18-1209, Lima 18, Perú; Machahua, Miguel; Museo de Historia Natural, Universidad Nacional Mayor de San Marcos, Av. Arenales 1256, Jesús María, Lima 11, Perú

    2012-01-01

    Detailed distribution of Astrocaryum sect. Huicungo (Arecaceae) in Peru is presented and discussed. Twelve out of the 15 species that compose this section are found in the Peruvian territory from North to South in the eastern Andean foothills and western Amazonian lowlands. All these species have a parapatric distribution, except for Astrocaryum macrocalyx and A. urostachys, which share a very limited area. Limits of distribution areas may be related to geographical, geomorphological and ecol...

  13. Phenology, fruit production and seed dispersal of Astrocaryum jauari (Arecaceae in Amazonian black water floodplains

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    F. Piedade Maria Teresa

    2006-12-01

    Full Text Available Astrocaryum jauari Mart. (Arecaceae is one of the commonest palm species occurring in nutritionally poor Amazonian black water floodplains. It is an emergent or subcanopy tree that grows on river banks and slands, with a wide distribution along the entire flooding gradient, tolerating flood durations between 30 and 340 days. The species is important for fish nutrition in the floodplains, and is also used for hearts of palm. In the present study, the auto-ecology of A. jauari w,as analysed over a period of two years in the Anavilhanas Archipelago, Rio Negro, Brazil, with a focus on phenology, fruit production, and seed dispersal. Fruit fall is annual and synchronized with high water levels, with a production of 1.6 ton of fruit ha-1. The fruits are eaten by at least 16 species of fish which either gnaw the pulp, fragment the seed, or ingest the entire fruit, thus acting as dispersal agents. Besides ichthyocory, barochory (with subsequent vegetative propagation is an important dispersal mode, enhancing the occurrence of large masses of individuals in the Anavilhanas islands and in the region of maximum palm heart extraction near BarcelosAstrocaryum jauari Mart. (Arecaceae es una de las especies más comunes de palma en las llanuras de inundación por las llamadas "aguas negras", aguas ricas en taninos que tienen pocos nutrientes para la fauna. Habita el subdosel que se desarrolla en riberas e islas, con una distribución amplia en toda la gradiente de inundación (resiste entre 30 y 340 días bajo el agua. La especie es importante para la nutrición de los peces y en la producción de palmito. La autoecología de A. jauari fue analizada por dos años en el Archipiélago Anavilhanas, río Negro, Brazil, con énfasis en fenología, producción de frutas, y dispersores de semillas. La caída de los frutos es anual y sincronizada con el aumento de los niveles de agua, con una producción de 1.6 ton de fruta ha-1. Las frutas son comidas por al menos de

  14. Conservation of the Palms (Arecaceae in the Solid Guamuhaya, county Cienfuegos

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    Duanny Suárez Oropesa

    2016-02-01

    Full Text Available During the last 10 years a floristic study was carried out on the family Arecaceae, according to the vegetable formations and the altitude in the southeast region of Cienfuegos province in the Guamuaya Mountains, with the objective of knowing the state of conservation of the palms species of present. The work embraced nine towns in those that the presence of species of this gender was determined by means of the observation method, the collections were carried out in an aleatory and intensive way, keeping in mind the micros hábitats where they progress this group of plants. They were five species, two endemic local, one endemic national and two autochthonous. According to their conservation state they are threatened species. Coccothrinax crinita subsp brevicrinis Borhidi & Muñiz, with category of In Danger (IN; Coccothrinax miraguama subsp. roseocarpa (León Borhidi & Muñiz, Sabal maritima (Kunth Burret and Roystonea regia (Kunth O.F. Cook, smaller Concern (LC, intending In Critical Danger (CP to Coccothinax sp.

  15. To what extent does Tobler's law of geography apply to macroecology? A case study using American palms (Arecaceae)

    DEFF Research Database (Denmark)

    Bjorholm, Stine Wendelboe; Svenning, J.-C.; Skov, Flemming

    2008-01-01

    Tobler's first law of geography, 'Everything is related to everything else, but near things are more related than distant things' also applies to biological systems as illustrated by a general and strong occurrence of geographic distance decay in ecological community similarity. Using American...... palms (Arecaceae) as an example, we assess the extent to which Tobler's first law applies to species richness and species composition, two fundamental aspects of ecological community structure. To shed light on the mechanisms driving distance decays in community structure, we also quantify the relative...

  16. Anti-inflammatory and antinociceptive activities of Euterpe oleracea Mart., Arecaceae, oil

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    Hugo A. S. Favacho

    2011-02-01

    Full Text Available The oil of the fruits of Euterpe oleracea Mart., Arecaceae (OEO, was evaluated in models of inflammation and hyperalgesia in vivo to study its effects on these conditions. The experimental models contained the writhing test in mice, rat paw edema, granuloma test in rats, vascular permeability in rats, cell migration to the peritoneal cavity in rats and ear erythema induced by croton oil in mice. Doses of 500, 1000 and 1500 mg/kg of OEO were administered orally. The observed number of writhes was inhibited by 33.67, 45.88 and 55.58%, respectively. OEO produced a dose-dependent effect, with linear correlation coefficient R=0.99 (y=0.0219x+23.133, and the median effective dose found was 1226.8 mg/kg. The oral administration of 1226.8 mg/kg of OEO inhibited carrageenan-induced edema by 29.18% (p<0.05 when compared to the control group. The daily administration of OEO for six days inhibited the formation of granulomatous tissue by 36.66% (p<0.01. In ear erythema induced by croton oil, OEO presented a significant inhibition (37.9%. In the vascular permeability test, treatment with OEO decreased the response to histamine, inhibiting vascular permeability by 54.16%. In carrageenan-induced peritonitis, OEO reduced the number of neutrophils migrating compared to the control group by 80.14%. These results suggested that OEO has anti-inflammatory and antinociceptive activities, probably of peripheral origin and linked to prostaglandin biosynthesis inhibition.

  17. Anti-inflammatory and antinociceptive activities of Euterpe oleracea Mart., Arecaceae, oil

    Directory of Open Access Journals (Sweden)

    Hugo A. S. Favacho

    2010-11-01

    Full Text Available The oil of the fruits of Euterpe oleracea Mart., Arecaceae (OEO, was evaluated in models of inflammation and hyperalgesia in vivo to study its effects on these conditions. The experimental models contained the writhing test in mice, rat paw edema, granuloma test in rats, vascular permeability in rats, cell migration to the peritoneal cavity in rats and ear erythema induced by croton oil in mice. Doses of 500, 1000 and 1500 mg/kg of OEO were administered orally. The observed number of writhes was inhibited by 33.67, 45.88 and 55.58%, respectively. OEO produced a dose-dependent effect, with linear correlation coefficient R=0.99 (y=0.0219x+23.133, and the median effective dose found was 1226.8 mg/kg. The oral administration of 1226.8 mg/kg of OEO inhibited carrageenan-induced edema by 29.18% (p<0.05 when compared to the control group. The daily administration of OEO for six days inhibited the formation of granulomatous tissue by 36.66% (p<0.01. In ear erythema induced by croton oil, OEO presented a significant inhibition (37.9%. In the vascular permeability test, treatment with OEO decreased the response to histamine, inhibiting vascular permeability by 54.16%. In carrageenan-induced peritonitis, OEO reduced the number of neutrophils migrating compared to the control group by 80.14%. These results suggested that OEO has anti-inflammatory and antinociceptive activities, probably of peripheral origin and linked to prostaglandin biosynthesis inhibition.

  18. Diel Patterns of Activity for Insect Pollinators of Two Oil Palm Species (Arecales : Arecaceae)

    Science.gov (United States)

    Frérot, Brigitte; Poveda, Roberto; Louise, Claude; Beaudoin-Ollivier, Laurence

    2017-01-01

    The pollination of two oil palm species, Elaeis guineensis Jacquin and Elaeis oleifera Cortés (Arecales: Arecaceae), depends on a mutualistic relation with insects, which use male inflorescences as a brood site, and visits female inflorescences lured by the emitted odor, which is similar to that of males. Although the activity of visiting the inflorescences by these insects is critical for the adequate natural pollination of the host plant, their activity is poorly documented. In the present study, we determine the diel activity of two specialized pollinator weevils (Coleoptera: Curculionidae) on inflorescences of their respective host-palm: Elaeidobius kamerunicus Faust specialized on E. guineensis, and Grasidius hybridus O’Brien and Beserra specialized on E. oleifera. The average timing of activity was studied by using passive interception traps. Then the pattern and the duration were refined by using aspiration trapping within the active period for each insect species at the male and female inflorescences. All the experiments were conducted in an Ecuadorian oil palm plantation, located close to Amazonian forest. El. kamerunicus and G. hybridus were found to be the pollinators of E. guineensis and E. oleifera, respectively. The two species differed in their diel pattern of activity: E. kamerunicus was active in the morning and G. hybridus during a short period at dusk. For both palm species, insect visits were synchronous on both male and female inflorescences. The synchronicity is discussed as a strategy to maintain the relation mutualistic between partners. These findings increase our understanding of the oil palm pollination system. PMID:28365767

  19. Seed banks on Attalea phalerata (Arecaceae) stems in the Pantanal wetland, Brazil

    Science.gov (United States)

    Corrêa, Christiane E.; Fischer, Erich; dos Santos, Flavio A. M.

    2012-01-01

    Background and Aims Seeds can accumulate in the soil or elsewhere, such as on the stems of palms when these are covered by persistent sheaths. These sheaths could act as a safe site for some species. Here, we studied whether persistent sheaths of the palm Attalea phalerata (Arecaceae) are available sites for seed accumulation in the Pantanal wetland of Brazil. We also investigated whether the composition, richness and diversity of species of seeds in the persistent sheaths are determined by habitat (riparian forest and forest patches) and/or season (wet and dry). Methods All accumulated material was collected from ten persistent sheaths along the stems of 64 A. phalerata individuals (16 per habitat and 16 per season). The material was then individually inspected under a stereomicroscope to record seed species and number. Key Results Of the 640 sheaths sampled, 65 % contained seeds (n = 3468). This seed bank included 75 species belonging to 12 families, and was primarily composed of small, endozoochoric seeds, with a few abundant species (Cecropia pachystachya and Ficus pertusa). Moraceae was the richest family (four species) and Urticaceae the most abundant (1594 seeds). Stems of A. phalerata in the riparian forest had 1·8 times more seeds and 1·3 times more species than those in forest patches. In the wet season we sampled 4·1 times more seeds and 2·2 more species on palm stems than in the dry season. Richness did not differ between habitats, but was higher in the wet season. Abundance was higher in forest patches and in the wet season. Conclusions Attalea phalerata stems contain a rich seed bank, comparable to soil seed banks of tropical forests. As most of these seeds are not adapted to grow in flooding conditions, palm stems might be regarded as safe sites for seeds (and seedlings) to escape from the seasonal flooding of the Pantanal. PMID:22210851

  20. Mid-tertiary dispersal, not Gondwanan vicariance explains distribution patterns in the wax palm subfamily (Ceroxyloideae: Arecaceae)

    DEFF Research Database (Denmark)

    Trénel, Philipp; Gustafsson, Mats; Baker, W.J.

    2007-01-01

    The Ceroxyloideae is a small but heterogeneous subfamily of palms (Arecaceae, Palmae). It includes a Caribbean lineage (tribe Cyclospathae), a southern hemisphere disjunction (tribe Ceroxyleae), and an amphi-Andean element (tribe Phytelepheae), until recently considered a distinct subfamily (Phyt...... proposed. Radiation in this tribe coincides largely with the major uplift of the Andes, favoring Andean orogeny over Pleistocene climatic changes as a possible speciation-promoting factor in this tribe........ Austral interplate dispersal of Oraniopsis to Australia could have occurred, but apparently only in the mid-Eocene/early Oligocene interval after global cooling had begun. Our data do not support Pleistocene climatic changes as drivers for speciation in the Andean-centered Phytelepheae as previously...

  1. Epiderme dos segmentos foliares de Mauritia flexuosa L. f. (Arecaceae em três fases de desenvolvimento Epidermis of leaf segments from Mauritia flexuosaL. f. (Arecaceae on three phases of development

    Directory of Open Access Journals (Sweden)

    Mahedy Araújo Bastos Passos

    2006-12-01

    Full Text Available São apresentados os dados anatômicos da epiderme dos segmentos foliares de Mauritia flexuosa L. f. (Arecaceae em três fases do desenvolvimento. Os segmentos foliares foram analisados em toda a extensão do limbo. As células intercostais da epiderme das faces adaxial e abaxial evidenciam-se com paredes sinuosas, retangulares e orientadas longitudinalmente em relação ao eixo do segmento foliar com acentuada presença de corpos de sílica esférico-espinulosos. As células epidérmicas da região costal de ambas as faces apresentam paredes retas e variam entre curtas, longas e arredondadas. Os tricomas são simples, unicelulares, longos, com base mais alargada. Os segmentos foliares de M. flexuosa são anfiestomáticos com estômatos tetracíticos. Em secção transversal a epiderme foliar é uniestratificada com câmara subestomática ampla. Os resultados obtidos não demonstraram variações expressivas entre as três fases de desenvolvimento e os caracteres encontrados parecem ser comuns a outras palmeiras.Anatomic data on the epidermis leaf segments from Mauritia flexuosa L. f. (Arecaceae are presented on three phases of development. Leaf segments were analyzed on the all extension of leaf. Both adaxial and abaxial epidermal cells stand out with sinuous walls, rectangular and longitudinally oriented to the foliar axis with the marked presence of spherical- spiny silica bodies. The back epidermal cells of both surfaces present straight walls and vary among short, long and round. Trichomes are unicellular, simple, long, with a wider base. Leaf segments from M. flexuosa are anphistomatic with tetracitic type stomats. In a cross-section the leaf skin is unistratified with a broad substimatic chamber. The findings obtained showed no significant variations among the three phases of development and the characters that were found appear to be common on other palm trees.

  2. Diversidad, patrones de uso y conservación de palmas Arecaceae en bosques pluviales del Chocó, Colombia

    Directory of Open Access Journals (Sweden)

    Hamleth Valois-Cuesta

    2013-12-01

    Full Text Available La familia Arecaceae es rica en especies, principalmente en el trópico, y constituye una fuente de recursos para la subsistencia de sus pobladores. En el presente trabajo se estudió la riqueza, diversidad, composición y patrones de uso de la familia Arecaceae en tres localidades de la cuenca media del río Atrato en el Chocó, Colombia, con el fin de obtener información que permita su conservación y uso sostenible. Se registraron 29 especies en 18 géneros, siendo Bactris 24.13 y Wettinia 10.34 los géneros más ricos en especies. El Buey mostró más especies y géneros 23 especies, 17 géneros que Beté 15 y 10 respectivamente y Tanguí 14 y 11 respectivamente. La similitud florística entre localidades fue menor al 45. Las especies con mayor peso ecológico y valor de uso fueron: Euterpe oleracea Mart., Oenocarpus bataua Mart., Attalea allennii H.E. Moore, Manicaria saccifera Gaertn., Bactris gassipaes Kunth y Wettinia quinaria O.F.Cook y Doyle R. Bernal. Las categorías de uso con mayor riqueza de especies e importancia cultural fueron: construcción, alimento y uso artesanal; y los órganos más usados fueron tallos y frutos. Los resultados de este trabajo demuestran que el Atrato Medio posee alta riqueza y diversidad de especies de palmas en un contexto regional y nacional. Sin embargo, la relación entre el número de uso y la importancia ecológica de la especie depende de la localidad, lo que indica que la importancia socio-cultural de la especie puede variar entre grupos humanos que comparten una misma cultura o región biogeográfica. Se publicarán estudios a futuro para determinar el papel del tipo de órgano utilizado como materia prima en la demografía y dinámica ecológica de las poblaciones de palma en el Chocó y otras regiones del Neotrópico.

  3. Elaeis oleifera Genomic-SSR Markers: Exploitation in Oil Palm Germplasm Diversity and Cross-Amplification in Arecaceae

    Science.gov (United States)

    Zaki, Noorhariza Mohd; Singh, Rajinder; Rosli, Rozana; Ismail, Ismanizan

    2012-01-01

    Species-specific simple sequence repeat (SSR) markers are favored for genetic studies and marker-assisted selection (MAS) breeding for oil palm genetic improvement. This report characterizes 20 SSR markers from an Elaeis oleifera genomic library (gSSR). Characterization of the repeat type in 2000 sequences revealed a high percentage of di-nucleotides (63.6%), followed by tri-nucleotides (24.2%). Primer pairs were successfully designed for 394 of the E. oleifera gSSRs. Subsequent analysis showed the ability of the 20 selected E. oleifera gSSR markers to reveal genetic diversity in the genus Elaeis. The average Polymorphism Information Content (PIC) value for the SSRs was 0.402, with the tri-repeats showing the highest average PIC (0.626). Low values of observed heterozygosity (Ho) (0.164) and highly positive fixation indices (Fis) in the E. oleifera germplasm collection, compared to the E. guineensis, indicated an excess of homozygosity in E. oleifera. The transferability of the markers to closely related palms, Elaeis guineensis, Cocos nucifera and ornamental palms is also reported. Sequencing the amplicons of three selected E. oleifera gSSRs across both species and palm taxa revealed variations in the repeat-units. The study showed the potential of E. oleifera gSSR markers to reveal genetic diversity in the genus Elaeis. The markers are also a valuable genetic resource for studying E. oleifera and other genus in the Arecaceae family. PMID:22605966

  4. Elaeis oleifera Genomic-SSR Markers: Exploitation in Oil Palm Germplasm Diversity and Cross-Amplification in Arecaceae

    Directory of Open Access Journals (Sweden)

    Ismanizan Ismail

    2012-03-01

    Full Text Available Species-specific simple sequence repeat (SSR markers are favored for genetic studies and marker-assisted selection (MAS breeding for oil palm genetic improvement. This report characterizes 20 SSR markers from an Elaeis oleifera genomic library (gSSR. Characterization of the repeat type in 2000 sequences revealed a high percentage of di-nucleotides (63.6%, followed by tri-nucleotides (24.2%. Primer pairs were successfully designed for 394 of the E. oleifera gSSRs. Subsequent analysis showed the ability of the 20 selected E. oleifera gSSR markers to reveal genetic diversity in the genus Elaeis. The average Polymorphism Information Content (PIC value for the SSRs was 0.402, with the tri-repeats showing the highest average PIC (0.626. Low values of observed heterozygosity (Ho (0.164 and highly positive fixation indices (Fis in the E. oleifera germplasm collection, compared to the E. guineensis, indicated an excess of homozygosity in E. oleifera. The transferability of the markers to closely related palms, Elaeis guineensis, Cocos nucifera and ornamental palms is also reported. Sequencing the amplicons of three selected E. oleifera gSSRs across both species and palm taxa revealed variations in the repeat-units. The study showed the potential of E. oleifera gSSR markers to reveal genetic diversity in the genus Elaeis. The markers are also a valuable genetic resource for studying E. oleifera and other genus in the Arecaceae family.

  5. Landscape-scale deforestation decreases gene flow distance of a keystone tropical palm, Euterpe edulis Mart (Arecaceae).

    Science.gov (United States)

    Santos, Alesandro S; Cazetta, Eliana; Dodonov, Pavel; Faria, Deborah; Gaiotto, Fernanda A

    2016-09-01

    Habitat loss represents one of the main threats to tropical forests, which have reached extremely high rates of species extinction. Forest loss negatively impacts biodiversity, affecting ecological (e.g., seed dispersal) and genetic (e.g., genetic diversity and structure) processes. Therefore, understanding how deforestation influences genetic resources is strategic for conservation. Our aim was to empirically evaluate the effects of landscape-scale forest reduction on the spatial genetic structure and gene flow of Euterpe edulis Mart (Arecaceae), a palm tree considered a keystone resource for many vertebrate species. This study was carried out in nine forest remnants in the Atlantic Forest, northeastern Brazil, located in landscapes within a gradient of forest cover (19-83%). We collected leaves of 246 adults and 271 seedlings and performed genotyping using microsatellite markers. Our results showed that the palm populations had low spatial genetic structure, indicating that forest reduction did not influence this genetic parameter for neither seedlings nor adults. However, forest loss decreased the gene flow distance, which may negatively affect the genetic diversity of future generations by increasing the risk of local extinction of this keystone palm. For efficient strategies of genetic variability conservation and maintenance of gene flow in E. edulis, we recommend the maintenance of landscapes with intermediary to high levels of forest cover, that is, forest cover above 40%.

  6. Dichloromethane-methanol extract from Borassus aethiopumn mart. (Arecaceae) induces apoptosis of human colon cancer HT-29 cells.

    Science.gov (United States)

    Sakandé, J; Rouet-benzineb, P; Devaud, H; Nikiema, J B; Lompo, M; Nacoulma, O G; Guissou, I P; Bado, A

    2011-05-15

    Borassus aetihiopum MART (Arecaceae) is a plant used in traditional herbal medicine for the treatment of various diseases (bronchitis, laryngitis, antiseptic). In particular, their male inflorcscences were reported to exhibit cicatrizing, antiseptic and fungicidal properties. In the present study, the biological activity of E2F2, an apolar extract from Borassus aethiopum male inflorescence was investigated on colon cancer HT29 cells. Phytochemical screening was carried according to methodology for chemical analysis for vegetable drugs. Cells proliferation was determined by the MTT assay and cells cycle distribution was analysed by using laser flow cytometer (Beckman coulter). The cytoskeleton organisation was examined under a laser scanning confocal microscope (Zess). Preliminary phytochemical analysis of E2F2 extract revealed the presence of sterols, triterpenes and saponosids. E2F2 extract (1 microg and 100 microg mL(-1)) significantly inhibited cell proliferation by blocking cell population in G0/G1 phase. Flow Cytometric analysis of E2F2-treated HT29 cells showed that hypoploïd cell population (sub G1 phase) increased with processing time exposures. Immunofluorescence confocal analysis revealed a disrupt actin microfilaments network in E2F2 treated-cells with a significant reduction in actin stress fibres and appearance of a random, non-oriented distribution of focal adhesion sites. These data indicate that E2F2 extract has anti-proliferative and pro-apoptotic activities. Further studies are required to unravel the mechanisms of action of E2F2 extract.

  7. Ecología de la polinización de tres especies de Oenocarpus (Arecaceae) simpátricas en la Amazonia Colombiana

    OpenAIRE

    Luis Alberto Núñez A.; Carolina Isaza; Gloria Galeano

    2015-01-01

    La comprensión de los mecanismos de polinización son de gran importancia para el desarrollo de planes de manejo y acciones de conservación de las especies de importancia económica. Con el objeto de conocer los mecanismos de polinización de palmas promisorias del género Oenocarpus (Arecaceae), se estudió la morfología, la biología floral, los visitantes, los polinizadores y éxito reproductivo de tres especies simpátricas en la Amazonía colombiana: O. bataua, O. balickii y O. minor. Durante el ...

  8. Predação de sementes de Allagoptera arenaria (Gomes O'Kuntze (Arecaceae por Pachymerus nucleorum Fabricius (Coleoptera, Chrysomelidae, Bruchinae Seed predation on Allagoptera arenaria (Gomes O'Kuntze (Arecaceae by Pachymerus nucleorum Fabricius (Coleoptera, Chrysomelidae, Bruchinae

    Directory of Open Access Journals (Sweden)

    Viviane Grenha

    2008-01-01

    Full Text Available A predação de sementes da palmeira Allagoptera arenaria (Gomes O'Kuntze, 1891(Arecaceae por Pachymerus nucleorum Fabricius, 1972 foi avaliada de setembro de 2003 a setembro de 2005 no Parque Nacional da Restinga de Jurubatiba (RJ. A biologia e o comportamento de P. nucleorum em A. arenaria e as taxas de predação de sementes foram descritas. Frutos encontrados sob 50 palmeiras foram coletados, mensalmente, em cada uma das duas áreas amostradas no PNRJ (mata de cordão arenoso e formação arbustiva aberta de Clusia Sclthdl, Clusiaceae. A avaliação dos cocos predados foi feita a partir da contagem dos orifícios de saída dos bruquíneos no campo, da emergência dos insetos no laboratório e da abertura dos frutos remanescentes. Através de observações e experimentos em 60 infrutescências, verificou-se que a oviposição de Pachymerus nucleorum em A. arenaria ocorre na infrutescência ainda em desenvolvimento diferentemente de registros na literatura em outras espécies de palmeiras, onde a oviposição ocorre nos frutos no chão. A predação dos frutos por P. nucleorum foi de 29,3% na área de mata de cordão arenoso e 20,6% na formação arbustiva aberta de Clusia. O ciclo de vida de P. nucleorum foi bastante longo e com amplitudes bem grandes dentro de uma mesma amostra, o que sugere uma possível diapausa em alguma fase do seu ciclo de vida.Seed predation on Allagoptera arenaria (Gomes O'Kuntze, 1891(Arecaceae palm by Pachymerus nucleorum Fabricius, 1972 was evaluated from September 2003 to September 2005 at the Parque Nacional da Restinga de Jurubatiba (PNRJ, Rio de Janeiro, Brazil. The biology and behaviour of P. nucleorum on A. arenaria and predation rates were described. Fruits found beneath 50 palms were collected, monthly, for each one of the two sampled areas at PNRJ (ridge forest and Clusia Sclthdl (Clusiaceae open shrubland formation. The evaluation of preyed fruits was done by counting exit holes of Bruchinae in the field

  9. Anatomía micrográfica del folíolo de la palma neotropical Bactris gasipaes (Arecaceae

    Directory of Open Access Journals (Sweden)

    Francisco Paulo Chaimsohn

    2008-06-01

    Full Text Available Se estudiaron hojas de plantas jóvenes cultivadas para producción de palmito de la variedad Diamantes 10 de ascendencia del Alto Amazonas. Se estudió la anatomía micrográfica foliar y la frecuencia de estomas en la superficie adaxial y abaxial de los foliolos de Bactris gasipaes provenientes de una plantación experimental en un régimen de fertilización química y una densidad de población de 5000 plantas por hectárea, en Guápiles, Costa Rica. Se confirmó la presencia de rafidios y células buliformes en la superficie abaxial de las láminas foliares y del tejido hipodermico en ambos lados. Confirmamos la ausencia de la anatomía Krantz en esta especie, reafirmando la fotosíntesis C3 como mecanismo metabólico en la familia Palmaceae. La densidad promedio de estomas en la superficie abaxial fue de 96,87±16,31 estomas.mm-2 y en la superficie adaxial fue de 14,20±4,05 estomas.mm-2.Leaf micrografic anatomy of the Neotropical palm Bactris gasipaes (Arecaceae. The economic importance of the palm Bactris gasipaes is growing in the Neotropoical region. We collected leaflets from plants under a chemical fertilization regime and a population of 5000 plants per hectare, in Costa Rica. The variety, Diamantes 10, has an ascendency fom the upper Amazon basin. We used Harries hematoxiline, eocine and standard light microscopy techniques. The presence of raphids and buliform cells was confirmed for the abaxial surface of the leaflets and for the hypodermic tissue on both sides. The absence of the Krantz anatomy was confirmed in consistence with former observations about the C3 photosynthesis in other species of Palmaceae. The average stomatal density on the abaxial surface was 96.87±16.31 stomata.mm-2 and 14.20±4.05 in the adaxial surface. Rev. Biol. Trop. 56 (2: 951-959. Epub 2008 June 30.

  10. Leaflet anatomy verifies relationships within Syagrus (Arecaceae and aids in identification

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    Larry Noblick

    2013-09-01

    Full Text Available The current investigation was carried out to examine how palm anatomy may coincide with the current molecular analysis including the three recognized clades of Syagrus Mart. and to justify the splitting of acaulescent Syagrus species (e.g. S. petraea (Mart. Becc. into several species. Free-hand cross-sections of leaflets were made and the comparison of these verifies the relationships suggested by the molecular data. Free-hand leaflet sections were also found to be useful in the identification of otherwise difficult-to-identify acaulescent Syagrus species. The result and conclusion is that anatomical data is valuable in helping to verify molecular data and that splitting the acaulescent species of Syagrus is justified by the differences discovered in their field habit and anatomy. These differences were used to produce an identification key that is based on the anatomy.

  11. Borassus aethiopum Mart, Arecaceae

    African Journals Online (AJOL)

    SARAH

    28 févr. 2014 ... (Akoegninou et al., 2006). La population est estimée à. 2.244.873 habitants qui sont regroupés dans plusieurs groupes socioculturels dont les majoritaires sont les. Tchabè, les Mahi, les Idaasha, les fon, les Bariba, les. Dendi et les Cotocoly. L'agriculture est la principale activité qui occupe la population du ...

  12. Butia capitata (Mart.) Becc. lamina anatomy as a tool for taxonomic distinction from B. odorata (Barb. Rodr.) Noblick comb. nov (Arecaceae).

    Science.gov (United States)

    Sant'anna-Santos, Bruno F; Carvalho Júnior, Wellington G O; Amaral, Vanessa B

    2015-03-01

    The distinction between Butia capitata and B. odorata is based only on a few morphological characteristics, therefore there is a need for additional studies for supporting the separation of the species. As lamina anatomy characteristics are relevant in circumscribing Arecaceae taxa, this work aimed to describe B. capitata lamina anatomy and compare it with B. odorata. Samples from the middle portion of the pinnae were collected and processed in accordance with standard plant anatomy techniques. The epidermis is uniseriate and composed of a thick cuticle and epicuticular waxes into like hooked filaments. The subsidiary cells that arch over the guard cells are located at the hypodermis. The mesophyll is isobilateral and compact. The vascular bundles are collateral with a sclerenchymatic sheath extension that reaches the hypodermis. The stegmata cells have spherical and druse-like silica bodies. The midrib faces the adaxial surface with a thick fibrous layer surrounding the vascular bundles adjacent to the chlorenchyma. The stratified expansion tissue is on the abaxial surface, within the boundary between the mesophyll and midrib. Raphides are only found in B. capitata. Small bundles of the midrib fully surround the fibrous cylinder only in B. odorata. These characteristics are diagnostic and useful for supporting the proposed separation.

  13. Butia capitata (Mart. Becc. lamina anatomy as a tool for taxonomic distinction from B. odorata (Barb. Rodr. Noblick comb. nov (Arecaceae

    Directory of Open Access Journals (Sweden)

    BRUNO F. SANT'ANNA-SANTOS

    2015-03-01

    Full Text Available The distinction between Butia capitata and B. odorata is based only on a few morphological characteristics, therefore there is a need for additional studies for supporting the separation of the species. As lamina anatomy characteristics are relevant in circumscribing Arecaceae taxa, this work aimed to describe B. capitata lamina anatomy and compare it with B. odorata. Samples from the middle portion of the pinnae were collected and processed in accordance with standard plant anatomy techniques. The epidermis is uniseriate and composed of a thick cuticle and epicuticular waxes into like hooked filaments. The subsidiary cells that arch over the guard cells are located at the hypodermis. The mesophyll is isobilateral and compact. The vascular bundles are collateral with a sclerenchymatic sheath extension that reaches the hypodermis. The stegmata cells have spherical and druse-like silica bodies. The midrib faces the adaxial surface with a thick fibrous layer surrounding the vascular bundles adjacent to the chlorenchyma. The stratified expansion tissue is on the abaxial surface, within the boundary between the mesophyll and midrib. Raphides are only found in B. capitata. Small bundles of the midrib fully surround the fibrous cylinder only in B. odorata. These characteristics are diagnostic and useful for supporting the proposed separation.

  14. Viabilidade e ação de lectinas na germinação in vitro de grãos de pólen de dendezeiro (Elaeis Guineensis Jacq. – Arecaceae)

    OpenAIRE

    Sousa, Alexsandro dos Santos

    2015-01-01

    No Brasil, pesquisas com grãos de pólen da família Arecaceae estão relacionados à melissopalinologia e palinotaxonomia, sendo escassos aqueles voltados à fisiologia do pólen. Estudos de biologia reprodutiva relacionados à polinização são de grande importância nas diversas culturas, visto que a partir dos seus resultados pode se obter parâmetros a serem utilizados visando o aumento considerável da produção de plantas cultivadas, bem como no tamanho e na qualidade dos frutos, contribuindo para ...

  15. Composición química de los aceites esenciales de las hojas de Helicteres guazumifolia (Sterculiaceae, Piper tuberculatum (Piperaceae, Scoparia dulcis (Arecaceae y Solanum subinerme (Solanaceae, recolectadas en Sucre, Venezuela

    Directory of Open Access Journals (Sweden)

    Gabriel Ordaz

    2011-06-01

    Full Text Available Los aceites esenciales son biosintetizados por plantas aromáticas y pueden obtenerse de cualquier órgano de la misma, tienen gran aplicación en la industria farmacéutica, sanitaria, cosmética, agrícola y de alimentos. Los aceites esenciales de las hojas de las plantas Helicteres guazumifolia, Piper tuberculatum, Scoparia dulcis y Solanum subinerme fueron obtenidos mediante hidrodestilación con rendimientos de 0.004, 0.032, 0.016 y 0.005%, respectivamente. La CG/EM permitió identificar la mayoría de los constituyentes de estos aceites esenciales (88.00, 89.80, 87.50 y 89.47%, respectivamente, encontrándose en mayor proporción metabolitos no volátiles de estructura no terpenoidal en H. guazumifolia (30.28%, sesquiterpenoides oxigenados en P. tuberculatum (52.19%, sesquiterpenos en S. dulcis (26.09% y derivados oxigenados de diterpenos en S. subinerme (39.67%. Los constituyentes mayoritarios fueron el diisobutilftalato (13.11% en H. guazumifolia, (--espatulenol (11.37% en P. tuberculatum y el trans-fitol (8.29 y 36.00% para S. dulcis y S. subinerme, respectivamente. El diisooctilftalato fue el constituyente común en los aceites esenciales de todas las especies y los compuestos volátiles trans-pinano, L-linalool, β-ionona, isofitol, neofitadieno, trans-fitol, dibutilftalato y hexadecanoato de metilo, fueron detectados en tres de estas esencias. Esto sugiere que dichas plantas pueden requerir metabolitos secundarios similares para su interacción ecológica, posiblemente debido a factores ambientales comunes.Chemical composition of essential oils from leaves of Helicteres guazumifolia (Sterculiaceae, Piper tuberculatum (Piperaceae, Scoparia dulcis (Arecaceae and Solanum subinerme (Solanaceae from Sucre, Venezuela. Essential oils, biosynthesized and accumulated in aromatic plants, have a wide range of applications in the pharmaceutical health, cosmetics, food and agricultural industry. This study aimed to analyze the secondary

  16. In silico mining of microsatellites in coding sequences of the date palm (Arecaceae) genome, characterization, and transferability.

    Science.gov (United States)

    Aberlenc-Bertossi, Frédérique; Castillo, Karina; Tranchant-Dubreuil, Christine; Chérif, Emira; Ballardini, Marco; Abdoulkader, Sabira; Gros-Balthazard, Muriel; Chabrillange, Nathalie; Santoni, Sylvain; Mercuri, Antonio; Pintaud, Jean-Christophe

    2014-01-01

    To complement existing sets of primarily dinucleotide microsatellite loci from noncoding sequences of date palm, we developed primers for tri- and hexanucleotide microsatellite loci identified within genes. Due to their conserved genomic locations, the primers should be useful in other palm taxa, and their utility was tested in seven other Phoenix species and in Chamaerops, Livistona, and Hyphaene. • Tandem repeat motifs of 3-6 bp were searched using a simple sequence repeat (SSR)-pipeline package in coding portions of the date palm draft genome sequence. Fifteen loci produced highly consistent amplification, intraspecific polymorphisms, and stepwise mutation patterns. • These microsatellite loci showed sufficient levels of variability and transferability to make them useful for population genetic, selection signature, and interspecific gene flow studies in Phoenix and other Coryphoideae genera.

  17. In Silico Mining of Microsatellites in Coding Sequences of the Date Palm (Arecaceae Genome, Characterization, and Transferability

    Directory of Open Access Journals (Sweden)

    Frédérique Aberlenc-Bertossi

    2014-01-01

    Full Text Available Premise of the study: To complement existing sets of primarily dinucleotide microsatellite loci from noncoding sequences of date palm, we developed primers for tri- and hexanucleotide microsatellite loci identified within genes. Due to their conserved genomic locations, the primers should be useful in other palm taxa, and their utility was tested in seven other Phoenix species and in Chamaerops, Livistona, and Hyphaene. Methods and Results: Tandem repeat motifs of 3–6 bp were searched using a simple sequence repeat (SSR–pipeline package in coding portions of the date palm draft genome sequence. Fifteen loci produced highly consistent amplification, intraspecific polymorphisms, and stepwise mutation patterns. Conclusions: These microsatellite loci showed sufficient levels of variability and transferability to make them useful for population genetic, selection signature, and interspecific gene flow studies in Phoenix and other Coryphoideae genera.

  18. Frugivoría y dispersión de semillas de la palma Oenocarpus bataua (Arecaceae en un bosque de los Andes colombianos Frugivory and seed dispersal Oenocarpus bataua palm (Arecaceae in a forest from the Colombian Andes

    Directory of Open Access Journals (Sweden)

    Rosario Rojas-Robles

    2012-12-01

    Full Text Available En zonas bajas tropicales, en bosques continuos y relativamente poco intervenidos, los frutos de la palma Oenocarpus bataua Mart., son consumidos por diversas especies de vertebrados, sin embargo, no hay estudios de dispersión de más largo plazo con esta especie. Entre agosto 2005-septiembre 2006 se realizaron observaciones de remoción de frutos, conteo de frutos comidos, observaciones focales, registros de frugivoría mediante trampas fotográficas, experimentos de dispersión y parcelas para determinar distribución espacial de Oenocarpus bataua. Cinco especies de mamíferos comen, dispersan, entierran (Sciurus granatensis, Microsciurus mimulus, Dasyprocta punctata y Proechimys sp., tapan (Marmosa robinsoni y llevan a las cuevas (Marmosa robinsoni y Proechimys sp., los frutos de O. bataua, sin dañar la semilla. El 21.7% de los frutos fueron dispersados, 13.2% roídos o pelados, 5.6% tapados, enterrados y llevados a cuevas. La distancia media de remoción de semillas y frutos fue 3.1m, aunque en menor proporción se registraron eventos de dispersión > a 50m. La abundante producción, el tamaño, el peso, la intensa remoción de los frutos por frugívoros, las cortas distancias de dispersión, la ausencia de frugívoros de gran porte disminuidos por cacería y fragmentación, encargados de la dispersión de larga distancia y el aumento de roedores, especialmente ardillas que presionan fuertemente el recurso frutos, generan una lluvia de semillas espacialmente restringida, posiblemente responsable de los patrones de distribución agregados en semillas, plántulas y posteriormente en juveniles y sub-adultos.Seed dispersal is a key process that determines the spatial structure and dynamics of populations of plants, establishes the potential area of recruitment and in this way, the basis for subsequent processes such as predation, germination, competition and growth. The purpose of this research was to identify the guild of frugivores of the

  19. Dinámica poblacional de la palma Euterpe oleracea (Arecaceae en bosques inundables del Chocó, Pacífico colombiano

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    Diego A Arango

    2010-03-01

    Full Text Available La palma Euterpe oleracea es una especie dominante y promisoria en el plano inundable del río Atrato, región del Chocó, Colombia. Nosotros evaluamos la dinámica poblacional de esta especie a través de las tasas de crecimiento, la mortalidad y los patrones de reclutamiento para un período de dos años y medio. La dinámica de las tasas fue comparada entre bosques de palma mixto y puro. Estos tipos de vegetación fueron asociados con diferentes regimenes de inundación. Árboles y palmas fueron cortados en una porción de cada tipo de bosque, el resto no fue alterado. Nosotros utilizamos proyecciones matriciales para determinar las tendencias de las poblaciones. Las cortas incrementaron las probabilidades de transición de individuos pequeños pero disminuyeron las de individuos grandes, como es típico de las especies heliófitas. Las cortas también incrementaron las tasas de mortalidad en casi todas las categorías de tamaño pero no afectaron las tasas de reclutamiento. Bajo condiciones naturales, las poblaciones de E. oleracea están en equilibrio en los bosques puro y mixto. Las cortas aumentaron el crecimiento poblacional en ambos tipos de bosque, lo que sugiere el rol desempeñado por procesos denso-dependientes sobre el tamaño poblacional de esta especie.Population dynamics of the palm Euterpe oleracea (Arecaceae from flooded forests in Choco, Colombian Pacific. The palm Euterpe oleracea is a dominant and promising species in flood plains of the Atrato river, Choco region of Colombia. We assessed the population dynamics of this species through growth rates, mortality and recruitment patterns for a period of two and a half years. Dynamic rates were compared among mixed and pure flood plain palm forests. These forests types were associated to different flooding regimes. Trees and palms were thinned in a portion for each forest type, the rest was left undisturbed. We used projection matrices to follow population trends. Thinning

  20. Ecología de la polinización de tres especies de Oenocarpus (Arecaceae simpátricas en la Amazonia Colombiana

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    Luis Alberto Núñez A.

    2015-03-01

    Full Text Available La comprensión de los mecanismos de polinización son de gran importancia para el desarrollo de planes de manejo y acciones de conservación de las especies de importancia económica. Con el objeto de conocer los mecanismos de polinización de palmas promisorias del género Oenocarpus (Arecaceae, se estudió la morfología, la biología floral, los visitantes, los polinizadores y éxito reproductivo de tres especies simpátricas en la Amazonía colombiana: O. bataua, O. balickii y O. minor. Durante el período 2010-2012 realizamos observaciones directas durante las fases de desarrollo de las inflorescencias en las tres especies. Se determinó la asociación de las palmas con sus visitantes florales a través de una red compleja, mientras que la especificidad o la preferencia de los insectos por cada palma individual se evaluó mediante el análisis similitud pareada, análisis de similitud (ANOSIM, un análisis de ordenación a partir del escalamiento multidimensional no métrico (NMSD. Las tres palmas florescen todo el año; sus inflorescencias contienen raquilas que cuelgan de un raquis corto, y presentan flores agrupadas en díadas o tríadas. Las inflorescencias son protandras, termogénicas; la antesis tiene lugar durante el día, pero la polinización es nocturna. Se registraron 79 especies de insectos, principalmente coleópteros, 33 de los cuales visitaron O. balickii, 63 a O. bataua y 33 a O. minor. Aunque compartían algunos visitantes, su abundancia en la fase pistilada, así como la carga de polen mostró que sólo unas pocas especies de Curculionidae y Nitidulidae son los polinizadores de las tres especies. Las diferencias en la estructura de la red entre las fases estaminadas y pistiladas, así como la diferencia en la abundancia encontrada con las pruebas de similitud ANOSIM y NMSD, sugieren una alta especificidad de polinizadores, lo que lleva a un aislamiento reproductivo entre las tres especies. Debido a que se encontró que

  1. The genus Hexopetion Burret (Arecaceae

    Directory of Open Access Journals (Sweden)

    Jean-Christophe Pintaud

    2014-03-01

    Full Text Available The genus Hexopetion was described by Burret to accommodate a single species, H. mexicanum. We reinstate the genus on the basis of morphological and anatomical data, and enlarge it to include a second species, Astrocaryum alatum, for which a new combination is made.

  2. The genus Hexopetion Burret (Arecaceae)

    OpenAIRE

    Jean-Christophe Pintaud; Betty Millán; Francis Kahn

    2008-01-01

    The genus Hexopetion was described by Burret to accommodate a single species, H. mexicanum. We reinstate the genus on the basis of morphological and anatomical data, and enlarge it to include a second species, Astrocaryum alatum, for which a new combination is made. El género Hexopetion definido por Burret con una única especie, H. mexicanum, se restablece a partir de datos morfológicos y anatómicos. Se incluye una segunda especie, Astrocaryum alatum, para la cual se hace una nueva combina...

  3. Diversity of Algerian oases date palm (Phoenix dactylifera L., Arecaceae): Heterozygote excess and cryptic structure suggest farmer management had a major impact on diversity.

    Science.gov (United States)

    Moussouni, Souhila; Pintaud, Jean-Christophe; Vigouroux, Yves; Bouguedoura, Nadia

    2017-01-01

    Date palm (Phoenix dactyliferaL.) is the mainstay of oasis agriculture in the Saharan region. It is cultivated in a large part of the Mediterranean coastal area of the Sahara and in most isolated oases in the Algerian desert. We sampled 10 oases in Algeria to understand the structure of date palm diversity from the coastal area to a very isolated desert location. We used 18 microsatellite markers and a chloroplast minisatellite to characterize 414 individual palm trees corresponding to 114 named varieties. We found a significant negative inbreeding coefficient, suggesting active farmer selection for heterozygous individuals. Three distinct genetic clusters were identified, a ubiquitous set of varieties found across the different oases, and two clusters, one of which was specific to the northern area, and the other to the drier southern area of the Algerian Sahara. The ubiquitous cluster presented very striking chloroplast diversity, signing the frequency of haplotypes found in Saudi Arabia, the most eastern part of the date palm range. Exchanges of Middle Eastern and Algerian date palms are known to have occurred and could have led to the introduction of this particular chlorotype. However, Algerian nuclear diversity was not of eastern origin. Our study strongly suggests that the peculiar chloroplastic diversity of date palm is maintained by farmers and could originate from date palms introduced from the Middle East a long time ago, which since then, hasbeen strongly introgressed. This study illustrates the complex structure of date palm diversity in Algerian oases and the role of farmers in shaping such cryptic diversity.

  4. Diversity of Algerian oases date palm (Phoenix dactylifera L., Arecaceae: Heterozygote excess and cryptic structure suggest farmer management had a major impact on diversity.

    Directory of Open Access Journals (Sweden)

    Souhila Moussouni

    Full Text Available Date palm (Phoenix dactyliferaL. is the mainstay of oasis agriculture in the Saharan region. It is cultivated in a large part of the Mediterranean coastal area of the Sahara and in most isolated oases in the Algerian desert. We sampled 10 oases in Algeria to understand the structure of date palm diversity from the coastal area to a very isolated desert location. We used 18 microsatellite markers and a chloroplast minisatellite to characterize 414 individual palm trees corresponding to 114 named varieties. We found a significant negative inbreeding coefficient, suggesting active farmer selection for heterozygous individuals. Three distinct genetic clusters were identified, a ubiquitous set of varieties found across the different oases, and two clusters, one of which was specific to the northern area, and the other to the drier southern area of the Algerian Sahara. The ubiquitous cluster presented very striking chloroplast diversity, signing the frequency of haplotypes found in Saudi Arabia, the most eastern part of the date palm range. Exchanges of Middle Eastern and Algerian date palms are known to have occurred and could have led to the introduction of this particular chlorotype. However, Algerian nuclear diversity was not of eastern origin. Our study strongly suggests that the peculiar chloroplastic diversity of date palm is maintained by farmers and could originate from date palms introduced from the Middle East a long time ago, which since then, hasbeen strongly introgressed. This study illustrates the complex structure of date palm diversity in Algerian oases and the role of farmers in shaping such cryptic diversity.

  5. Useful palms (Arecaceae) near Iquitos, Peruvian Amazon

    OpenAIRE

    Henrik Balslev; César Grandez; Paniagua Zambrana, Narel Y.; Anne Louise Møller; Sandie Lykke Hansen

    2014-01-01

    Se presenta información etnobotánica sobre usos de 64 especies de palmas encontradas en 28 comunidades en el Departamento de Loreto, Perú. Las palmas tienen gran importancia como fuente de alimento (Bactris gasipaes, Mauritia flexuosa, Euterpe precatoria, Oenocarpus bataua), para la obtención de fibras (Astrocaryum chambira, Aphandra natalia), en la construcción de viviendas (Euterpe precatoria, Iriartea deltoidea,Socratea exorrhiza), para su techado (muchas especies de Attalea, Lepidocar...

  6. Aspectos fitossociológicos, florísticos e etnobotânicos das palmeiras (Arecaceae de floresta secundária no município de Bragança, PA, Brasil Phytosociological, floristic, and ethnobotanical aspects of the palms (Arecaceae in a secondary forest in the Municipality of Bragança, Pará State, Brazil

    Directory of Open Access Journals (Sweden)

    Antônio Elielson Sousa da Rocha

    2005-09-01

    Full Text Available Este trabalho teve como objetivo realizar um levantamento das palmeiras em seis fragmentos de floresta secundária, no município de Bragança, PA, Brasil. Registraram-se 14 espécies distribuídas em nove gêneros, com predominância para Maximiliana maripa (Aubl. Drude e Astrocaryum gynacanthum Mart. São apresentados chave de identificação, descrições, ilustrações, citações de material examinado, e de nomes populares, comentários taxonômicos e etnobotânicos dessas espécies.The purpose of this study was to conduct a floristic inventory of the palms in six fragments of secondary forest in the Municipality of Bragança, Pará State, Brazil. In this study 14 species (nine genera were identified. Maximiliana maripa (Aubl. Drude and Astrocaryum gynacanthum Mart. were the dominant species. We present ethnobotanical data, identification keys, descriptions, illustrations, specimens examined, common names, and general comments about the species.

  7. Thoughts on identifiers

    CERN Multimedia

    CERN. Geneva

    2005-01-01

    As business processes and information transactions have become an inextricably intertwined with the Web, the importance of assignment, registration, discovery, and maintenance of identifiers has increased. In spite of this, integrated frameworks for managing identifiers have been slow to emerge. Instead, identification systems arise (quite naturally) from immediate business needs without consideration for how they fit into larger information architectures. In addition, many legacy identifier systems further complicate the landscape, making it difficult for content managers to select and deploy identifier systems that meet both the business case and long term information management objectives. This presentation will outline a model for evaluating identifier applications and the functional requirements of the systems necessary to support them. The model is based on a layered analysis of the characteristics of identifier systems, including: * Functional characteristics * Technology * Policy * Business * Social T...

  8. Identifiability in stochastic models

    CERN Document Server

    1992-01-01

    The problem of identifiability is basic to all statistical methods and data analysis, occurring in such diverse areas as Reliability Theory, Survival Analysis, and Econometrics, where stochastic modeling is widely used. Mathematics dealing with identifiability per se is closely related to the so-called branch of ""characterization problems"" in Probability Theory. This book brings together relevant material on identifiability as it occurs in these diverse fields.

  9. Identifiability of nonlinear systems

    Energy Technology Data Exchange (ETDEWEB)

    Tunali, E.T.

    1985-01-01

    The parameter identifiability problem of deterministic, nonlinear dynamical control systems is studied in the framework of differential geometric systems theory. The relations between nonlinear observability, nonlinear functional expansions and identifiability are investigated and necessary and sufficient conditions are obtained for a class of nonlinear systems. In a different approach, by using the uniqueness theorem of nonlinear system realization theory, necessary and sufficient conditions are obtained for another class of nonlinear systems. These results provide an insight to the identifiability problem of nonlinear systems. The results are illustrated by examples that also show the effectiveness of the conditions obtained. Finally, some possible research topics in this area are suggested.

  10. Identifying Knowledge and Communication

    Directory of Open Access Journals (Sweden)

    Eduardo Coutinho Lourenço de Lima

    2006-12-01

    Full Text Available In this paper, I discuss how the principle of identifying knowledge which Strawson advances in ‘Singular Terms and Predication’ (1961, and in ‘Identifying Reference and Truth-Values’ (1964 turns out to constrain communication. The principle states that a speaker’s use of a referring expression should invoke identifying knowledge on the part of the hearer, if the hearer is to understand what the speaker is saying, and also that, in so referring, speakers are attentive to hearers’ epistemic states. In contrasting it with Russell’s Principle (Evans 1982, as well as with the principle of identifying descriptions (Donnellan 1970, I try to show that the principle of identifying knowledge, ultimately a condition for understanding, makes sense only in a situation of conversation. This allows me to conclude that the cooperative feature of communication (Grice 1975 and reference (Clark andWilkes-Gibbs 1986 holds also at the understanding level. Finally, I discuss where Strawson’s views seem to be unsatisfactory, and suggest how they might be improved.

  11. Identifying learning styles.

    Science.gov (United States)

    Hughes, Grace

    2016-12-14

    What was the nature of the CPD activity, practice-related feedback and/or event and/or experience in your practice? The article explored different learning styles and outlined some of the models that can be used to identify them. It discussed the limitations of these models, indicating that although they can be helpful in identifying a student's preferred learning style, this is not 'fixed' and might change over time. Learning is also influenced by other factors, such as culture and age.

  12. Identifying and Managing Risk.

    Science.gov (United States)

    Abraham, Janice M.

    1999-01-01

    The role of the college or university chief financial officer in institutional risk management is (1) to identify risk (physical, casualty, fiscal, business, reputational, workplace safety, legal liability, employment practices, general liability), (2) to develop a campus plan to reduce and control risk, (3) to transfer risk, and (4) to track and…

  13. Random Cell Identifiers Assignment

    Directory of Open Access Journals (Sweden)

    Robert Bestak

    2012-01-01

    Full Text Available Despite integration of advanced functions that enable Femto Access Points (FAPs to be deployed in a plug-and-play manner, the femtocell concept still cause several opened issues to be resolved. One of them represents an assignment of Physical Cell Identifiers (PCIs to FAPs. This paper analyses a random based assignment algorithm in LTE systems operating in diverse femtocell scenarios. The performance of the algorithm is evaluated by comparing the number of confusions for various femtocell densities, PCI ranges and knowledge of vicinity. Simulation results show that better knowledge of vicinity can significantly reduce the number of confusions events.

  14. Global Microbial Identifier

    DEFF Research Database (Denmark)

    Wielinga, Peter; Hendriksen, Rene S.; Aarestrup, Frank Møller

    2017-01-01

    Human and animal populations are increasingly confronted with emerging and re-emerging infections and often such infections are exchanged between these populations, e.g. through food. A more effective and uniform approach to the prevention of these microbial threats is essential. The technological......-source systems. There is therefore an obvious need to develop a global system of whole microbial genome databases to aggregate, share, mine and use microbiological genomic data, to address global public health and clinical challenges, and most importantly to identify and diagnose infectious diseases. The global...... of microorganisms, for the identification of relevant genes and for the comparison of genomes to detect outbreaks and emerging pathogens. To harness the full potential of WGS, a shared global database of genomes linked to relevant metadata and the necessary software tools needs to be generated, hence the global...

  15. Actionable Persistent Identifier Collections

    Directory of Open Access Journals (Sweden)

    Tobias Weigel

    2014-01-01

    Full Text Available Persistent Identifiers (PIDs have lately received a lot of attention from scientific infrastructure projects and communities that aim to employ them for management of massive amounts of research data and metadata objects. Such usage scenarios, however, require additional facilities to enable automated data management with PIDs. In this article, we present a conceptual framework that is based on the idea of using common abstract data types (ADTs in combination with PIDs. This provides a well-defined interface layer that abstracts from both underlying PID systems and higher-level applications. Our practical implementation is based on the Handle System, yet the fundamental concept of PID-based ADTs is transferable to other infrastructures, and it is well suited to achieve interoperability between them.

  16. Identifying potential academic leaders

    Science.gov (United States)

    White, David; Krueger, Paul; Meaney, Christopher; Antao, Viola; Kim, Florence; Kwong, Jeffrey C.

    2016-01-01

    Objective To identify variables associated with willingness to undertake leadership roles among academic family medicine faculty. Design Web-based survey. Bivariate and multivariable analyses (logistic regression) were used to identify variables associated with willingness to undertake leadership roles. Setting Department of Family and Community Medicine at the University of Toronto in Ontario. Participants A total of 687 faculty members. Main outcome measures Variables related to respondents’ willingness to take on various academic leadership roles. Results Of all 1029 faculty members invited to participate in the survey, 687 (66.8%) members responded. Of the respondents, 596 (86.8%) indicated their level of willingness to take on various academic leadership roles. Multivariable analysis revealed that the predictors associated with willingness to take on leadership roles were as follows: pursuit of professional development opportunities (odds ratio [OR] 3.79, 95% CI 2.29 to 6.27); currently holding at least 1 leadership role (OR 5.37, 95% CI 3.38 to 8.53); a history of leadership training (OR 1.86, 95% CI 1.25 to 2.78); the perception that mentorship is important for one’s current role (OR 2.25, 95% CI 1.40 to 3.60); and younger age (OR 0.97, 95% CI 0.95 to 0.99). Conclusion Willingness to undertake new or additional leadership roles was associated with 2 variables related to leadership experiences, 2 variables related to perceptions of mentorship and professional development, and 1 demographic variable (younger age). Interventions that support opportunities in these areas might expand the pool and strengthen the academic leadership potential of faculty members. PMID:27331226

  17. Identifying Adolescent Sleep Problems

    Science.gov (United States)

    Short, Michelle A.; Gradisar, Michael; Gill, Jason; Camfferman, Danny

    2013-01-01

    Objectives To examine the efficacy of self-report and parental report of adolescent sleep problems and compare these findings to the incidence of adolescents who fulfill clinical criteria for a sleep problem. Sleep and daytime functioning factors that predict adolescents’ self-identification of a sleep problem will also be examined. Method 308 adolescents (aged 13–17 years) from eight socioeconomically diverse South Australian high schools participated in this study. Participants completed a survey battery during class time, followed by a 7-day Sleep Diary and the Flinders Fatigue Scale completed on the final day of the study. Parents completed a Sleep, Medical, Education and Family History Survey. Results The percentage of adolescents fulfilling one or more of the criteria for a sleep problem was inordinately high at 66%. Adolescent self-reporting a sleep problem was significantly lower than the adolescents who had one or more of the clinical criteria for a sleep problem (23.1% vs. 66.6%; χ2 = 17.46, padolescent having a sleep problem was significantly lower than adolescent self-report (14.3% vs. 21.1%, pAdolescents who reported unrefreshing sleep were 4.81 times more likely to report a sleep problem. For every hour that bedtime was delayed, the odds of self-reporting a sleep problem increased by 1.91 times, while each additional 10 minutes taken to fall asleep increased the odds 1.40 times. Conclusion While many adolescents were found to have sleep patterns indicative of a sleep problem, only a third of this number self-identify having a sleep problem, while only a sixth of this number are indicated by parental report. This study highlights important features to target in future sleep education and intervention strategies for both adolescents and parents. PMID:24086501

  18. Digital Identifier Systems: Comparative Evaluation

    Directory of Open Access Journals (Sweden)

    Hamid Reza Khedmatgozar

    2015-02-01

    Full Text Available Identifier is one of the main elements in identifying an object in digital environment. Digital identifier systems were developed followed by a lot of problems such as violation of persistency and uniqueness of physical identifiers and URL in digital environment. These identifiers try to guarantee uniqueness and persistency of hostnames by using indirect names for Domain Name System (DNS. The main objective of this research is to identify qualified digital identifier system among other systems. To achieve the research objective, researchers have considered two major steps: first, identifying main criteria for distinguishing digital identifier based on literature review and focus group interview; and second, performing a comparative evaluation on common identifier systems in the world. Findings of first step demonstrated seven main criteria in three domains for distinguishing digital identifier systems: identifier uniqueness and persistency in the identifier features domain, digital identification, digital uniqueness, digital persistency and digital actionability in the digital coverage domain, and globality in the comprehensiveness of scope domain. In the second step, results of the comparative evaluation on common identifier systems indicated that six identifier systems, included, DOI, Handle, UCI, URN, ARK and PURL, are appropriate choices for using as a digital identifier system. Also, according to these results, three identification systems Including NBN, MARIAM and ISNI were identified as suitable choices for digital identification in certain specialized fields. According to many benefits of using these identifiers in important applied fields, such as, digital content chains and networks integration, digital right management, cross referencing, digital libraries and citation analysis, results of this study can help digital environment experts to diagnose digital identifier and their effective use in applied fields.

  19. New criteria to identify spectrum

    DEFF Research Database (Denmark)

    Jensen, Arne; Krishna, M.

    In this paper we give some new criteria for identifying the components of a probability measure, in its Lebesgue decomposition. This enables us to give new criteria to identify spectral types of self adjoint operators on Hilbert spaces, especially those of interest....

  20. New criteria to identify spectrum

    DEFF Research Database (Denmark)

    Jensen, Arne; Krishna, M.

    2005-01-01

    In this paper we give some new criteria for identifying the components of a probability measure, in its Lebesgue decomposition. This enables us to give new criteria to identify spectral types of self-adjoint operators on Hilbert spaces, especially those of interest....

  1. Author Identifiers in Scholarly Repositories

    CERN Document Server

    Warner, Simeon

    2010-01-01

    Bibliometric and usage-based analyses and tools highlight the value of information about scholarship contained within the network of authors, articles and usage data. Less progress has been made on populating and using the author side of this network than the article side, in part because of the difficulty of unambiguously identifying authors. I briefly review a sample of author identifier schemes, and consider use in scholarly repositories. I then describe preliminary work at arXiv to implement public author identifiers, services based on them, and plans to make this information useful beyond the boundaries of arXiv.

  2. Methods for Identifying Translational Researchers

    Science.gov (United States)

    Feeney, Mary K.; Johnson, Timothy; Welch, Eric W.

    2014-01-01

    There is currently no generally accepted method for identifying the community of translational researchers when evaluating Clinical and Translational Science Centers. We use data from the multiyear evaluation of the University of Illinois at Chicago Center for Clinical and Translational Science (CCTS) to investigate the complexities of reliably identifying translational researchers. We use three methods to identify translational researchers: (1) participating in CCTS services and programs; (2) self-identifying as a translational researcher; and (3) engaging in activities that are characteristic of translational science. We find little overlap of these differently defined research groups. We conclude with a discussion of how the findings suggest challenges for evaluating translational science programs and the need for better definition, communication, and demonstration of translational science for scientists and evaluators. PMID:24064431

  3. Identifying parameter regions for multistationarity

    DEFF Research Database (Denmark)

    Conradi, Carsten; Feliu, Elisenda; Mincheva, Maya

    2017-01-01

    Mathematical modelling has become an established tool for studying the dynamics of biological systems. Current applications range from building models that reproduce quantitative data to identifying systems with predefined qualitative features, such as switching behaviour, bistability or oscillat...

  4. Identifying Clients Predisposed To Failure

    Science.gov (United States)

    Carnes, G. D.

    1973-01-01

    Studies are reviewed that report the prediction of rehabilitation failure from personality measures. Related research is discussed that suggest the dynamics underlying a key concept, the "hypochondriacally organized personality" which is identifiable from the Rorschach anatomy response percentage. (Author)

  5. Karyotype and genome size in Euterpe Mart. (Arecaceae) species.

    OpenAIRE

    Oliveira, Ludmila Cristina; Padilha de Oliveira,Maria do Socorro; Davide,Lisete Chamma; Augusta Torres, Giovana

    2016-01-01

    Abstract Euterpe (Martius, 1823), a genus from Central and South America, has species with high economic importance in Brazil, because of their palm heart and fruits, known as a?a? berries. Breeding programs have been conducted to increase yield and establish cultivation systems to replace the extraction of wild material. These programs need basic information about the genome of these species to better explore the available genetic variability. The aim of this study was to compare Euterpe edu...

  6. Genetic diversity in a germplasm bank of Oenocarpus mapora (Arecaceae).

    Science.gov (United States)

    Moura, E F; de Oliveira, M S P

    2012-11-26

    Oenocarpus mapora is an Amazonian palm species commonly used by native populations for food and in folk medicine. We measured genetic variability, using RAPD markers, of material kept in a germplasm bank composed of accessions sampled from the Brazilian Amazon. These included 74 individuals from 23 accessions sampled from 9 localities in three States of the Brazilian Amazon. Jaccard genetic similarities were calculated based on 137 polymorphic bands, amplified by 15 primers. Dendrograms constructed based on the genetic similarities among individuals and sample localities demonstrated genetic separation of Acre State from the States of Amazonas and Pará. Two models in three hierarchical levels were considered for AMOVA: one considering the grouping of sampling sites in each state, and the other considering sampling sites in each subgroup formed by the dendrograms. The first model showed no significant genetic variation among states. On the other hand, genetic variation among subgroups was significant. In this model, the within-sample-site genetic diversity was 47.15%, which is considered to be low, since O. mapora is allogamous. By means of Bayesian analysis, the sample sites were clustered into five groups, and their distribution was similar to what we found in the dendrograms based on genetic similarity.

  7. Estructura floral de dos especies de Trachycarpeae (Arecaceae

    Directory of Open Access Journals (Sweden)

    Lorena I. Guevara

    2014-09-01

    Full Text Available Copernicia y Washingtonia son dos de los géneros de Trachycarpeae para los cuales no ha sido propuesta una clasificación subtribal debido a la carencia de resolución en los estudios filogenéticos. La morfología y anatomía floral dentro de Coryphoideae han sido útiles para la delimitación de taxones y apoyo de relaciones. En este trabajo se presenta una descripción de la estructura morfo-anatómica de las flores de C. tectorum y W. filifera, con la finalidad de explorar caracteres reproductivos que puedan aclarar su ubicación dentro de la subfamilia y contribuir con estudios de biología floral. Se fijaron flores de especimenes cultivados de ambos taxones y frutos en desarrollo de C. tectorum, se realizaron disecciones para las descripciones morfológicas y cortes anatómicos seriados para la obtención de láminas permanentes utilizando técnicas convencionales con parafina. Todos los procedimientos fueron llevados a cabo en el Laboratorio de Morfo-Anatomía, Facultad de Agronomía de la Universidad Central de Venezuela (UCV. Ambas especies tienen flores hermafroditas. Las flores de C. tectorum tienen perianto engrosado y pubescente. Las flores de W. filifera presentan un cáliz irregularmente dentado y corola corto-acuminada. Se reportan células con drusas en el tubo estaminal de C. tectorum. Uno solo de los carpelos de C. tectorum se desarrolla en fruto y se encontró una capa de células con rafidios que podrían formar el endocarpo crustáceo en los frutos maduros. W. filifera presenta pocas capas de células de paredes engrosadas y tejido esclerenquimático en el mesofilo del perianto, gineceo con carpelos fusionados en el ápice del ovario (en su porción ventral, libres en la base y en el ápice del estilo, donde presenta suturas ventrales abiertas. Los pétalos de C. tectorum poseen una hipodermis ventral de células con paredes muy engrosadas, gineceo con carpelos fusionados en el ápice del ovario, libres y adpresos en su base, región estilar-estigmática fusionada y canal de transmisión estilar ausente distalmente. La presencia de canales estilares separados en C. tectorum, unidos distalmente en W. filifera confirman la relación cercana de estas especies con la subtribu Livistoninae. Igualmente, se encontraron algunas similitudes entre C. tectorum y Pritchardia (p.e. base carnosa del cáliz y epidermis ventral con células de paredes engrosadas en los pétalos, apoyando ciertas afinidades entre ambos géneros.

  8. Karyotype and genome size in Euterpe Mart. (Arecaceae) species.

    Science.gov (United States)

    Oliveira, Ludmila Cristina; de Oliveira, Maria do Socorro Padilha; Davide, Lisete Chamma; Torres, Giovana Augusta

    2016-01-01

    Euterpe (Martius, 1823), a genus from Central and South America, has species with high economic importance in Brazil, because of their palm heart and fruits, known as açaí berries. Breeding programs have been conducted to increase yield and establish cultivation systems to replace the extraction of wild material. These programs need basic information about the genome of these species to better explore the available genetic variability. The aim of this study was to compare Euterpe edulis (Martius, 1824), Euterpe oleracea (Martius, 1824) and Euterpe precatoria (Martius, 1842), with regard to karyotype, type of interphase nucleus and nuclear DNA amount. Metaphase chromosomes and interphase nuclei from root tip meristematic cells were obtained by the squashing technique and solid stained for microscope analysis. The DNA amount was estimated by flow cytometry. There were previous reports on the chromosome number of Euterpe edulis and Euterpe oleracea, but chromosome morphology of these two species and the whole karyotype of Euterpe precatoria are reported for the first time. The species have 2n=36, a number considered as a pleisomorphic feature in Arecoideae since the modern species, according to floral morphology, have the lowest chromosome number (2n=28 and 2n=30). The three Euterpe species also have the same type of interphase nuclei, classified as semi-reticulate. The species differed on karyotypic formulas, on localization of secondary constriction and genome size. The data suggest that the main forces driving Euterpe karyotype evolution were structural rearrangements, such as inversions and translocations that alter chromosome morphology, and either deletion or amplification that led to changes in chromosome size.

  9. Football refereeing: Identifying innovative methods

    Directory of Open Access Journals (Sweden)

    Reza MohammadKazemi

    2014-08-01

    Full Text Available The aim of the present study is to identify the potentials innovation in football industry. Data were collected from 10 national and international referees, assistant referees and referees’ supervisors in Iran. In this study, technological innovations are identified that assist better refereeing performances. The analysis revealed a significant relationship between using new technologies and referees ‘performance. The results indicate that elite referees, assistant referees and supervisors agreed to use new technological innovations during the game. According to their comments, this kind of technology causes the referees’ performance development.

  10. Identifying high-risk medication

    DEFF Research Database (Denmark)

    Sædder, Eva; Brock, Birgitte; Nielsen, Lars Peter

    2014-01-01

    salicylic acid, and beta-blockers; 30 drugs or drug classes caused 82 % of all serious MEs. The top ten drugs involved in fatal events accounted for 73 % of all drugs identified. CONCLUSION: Increasing focus on seven drugs/drug classes can potentially reduce hospitalizations, extended hospitalizations...

  11. Identifying Two-Sided Markets

    NARCIS (Netherlands)

    Filistrucchi, L.; Geradin, D.A.A.G.; van Damme, E.E.C.

    2012-01-01

    Abstract: We review the burgeoning literature on two-sided markets focusing on the different definitions that have been proposed. In particular, we show that the well-known definition given by Evans is a particular case of the more general definition proposed by Rochet and Tirole. We then identify

  12. Identifying Innovative Agricultural Education Programs

    Science.gov (United States)

    Rayfield, John; Murphy, Tim; Briers, Gary; Lewis, Lauren

    2012-01-01

    Researchers identified innovative agricultural education programs across the United States. A Delphi study was conducted with the teachers in innovative programs. According to the teachers, innovative programs in 2020 will use hands-on activities and will be run by highly motivated teachers. The purpose of innovative programs in the future will be…

  13. Methods of Identifying Marketing Competencies

    Science.gov (United States)

    Crawford, Lucy C.; Ertel, Kenneth A.

    1970-01-01

    The competency pattern and the task analysis are two approaches used to identify content that affects the distributive education curriculum. These and other research tools provide essential information about capabilities required for entrance into and persistence in careers at prescribed levels of distributive jobs. (Author)

  14. Metadata, Identifiers, and Physical Samples

    Science.gov (United States)

    Arctur, D. K.; Lenhardt, W. C.; Hills, D. J.; Jenkyns, R.; Stroker, K. J.; Todd, N. S.; Dassie, E. P.; Bowring, J. F.

    2016-12-01

    Physical samples are integral to much of the research conducted by geoscientists. The samples used in this research are often obtained at significant cost and represent an important investment for future research. However, making information about samples - whether considered data or metadata - available for researchers to enable discovery is difficult: a number of key elements related to samples are difficult to characterize in common ways, such as classification, location, sample type, sampling method, repository information, subsample distribution, and instrumentation, because these differ from one domain to the next. Unifying these elements or developing metadata crosswalks is needed. The iSamples (Internet of Samples) NSF-funded Research Coordination Network (RCN) is investigating ways to develop these types of interoperability and crosswalks. Within the iSamples RCN, one of its working groups, WG1, has focused on the metadata related to physical samples. This includes identifying existing metadata standards and systems, and how they might interoperate with the International Geo Sample Number (IGSN) schema (schema.igsn.org) in order to help inform leading practices for metadata. For example, we are examining lifecycle metadata beyond the IGSN `birth certificate.' As a first step, this working group is developing a list of relevant standards and comparing their various attributes. In addition, the working group is looking toward technical solutions to facilitate developing a linked set of registries to build the web of samples. Finally, the group is also developing a comparison of sample identifiers and locators. This paper will provide an overview and comparison of the standards identified thus far, as well as an update on the technical solutions examined for integration. We will discuss how various sample identifiers might work in complementary fashion with the IGSN to more completely describe samples, facilitate retrieval of contextual information, and

  15. Distributed Persistent Identifiers System Design

    Directory of Open Access Journals (Sweden)

    Pavel Golodoniuc

    2017-06-01

    Full Text Available The need to identify both digital and physical objects is ubiquitous in our society. Past and present persistent identifier (PID systems, of which there is a great variety in terms of technical and social implementation, have evolved with the advent of the Internet, which has allowed for globally unique and globally resolvable identifiers. PID systems have, by in large, catered for identifier uniqueness, integrity, and persistence, regardless of the identifier’s application domain. Trustworthiness of these systems has been measured by the criteria first defined by Bütikofer (2009 and further elaborated by Golodoniuc 'et al'. (2016 and Car 'et al'. (2017. Since many PID systems have been largely conceived and developed by a single organisation they faced challenges for widespread adoption and, most importantly, the ability to survive change of technology. We believe that a cause of PID systems that were once successful fading away is the centralisation of support infrastructure – both organisational and computing and data storage systems. In this paper, we propose a PID system design that implements the pillars of a trustworthy system – ensuring identifiers’ independence of any particular technology or organisation, implementation of core PID system functions, separation from data delivery, and enabling the system to adapt for future change. We propose decentralisation at all levels — persistent identifiers and information objects registration, resolution, and data delivery — using Distributed Hash Tables and traditional peer-to-peer networks with information replication and caching mechanisms, thus eliminating the need for a central PID data store. This will increase overall system fault tolerance thus ensuring its trustworthiness. We also discuss important aspects of the distributed system’s governance, such as the notion of the authoritative source and data integrity

  16. Identifying patient risks during hospitalization

    Directory of Open Access Journals (Sweden)

    Lucélia Ferreira Lima

    2008-12-01

    Full Text Available Objective: To identify the risks reported at a public institution andto know the main patient risks from the nursing staff point of view.Methods: A retrospective, descriptive and exploratory study. Thesurvey was developed at a hospital in the city of Taboão da Serra, SãoPaulo, Brazil. The study included all nurses working in care areas whoagreed to participate in the study. At the same time, sentinel eventsoccurring in the period from July 2006 to July 2007 were identified.Results: There were 440 sentinel events reported, and the main risksincluded patient falls, medication errors and pressure ulcers. Sixty-fivenurses were interviewed. They also reported patient falls, medicationerrors and pressure ulcers as the main risks. Conclusions: Riskassessment and implementation of effective preventive actions arenecessary to ensure patient’s safety. Involvement of a multidisciplinaryteam is one of the steps for a successful process.

  17. [Identifying victims of a disaster].

    Science.gov (United States)

    de Boer, Hans H; Kloosterman, Ate D; de Bruijn, Arie G; Maat, George J R

    2014-01-01

    Identifying the victims of a disaster is important for the next of kin, to issue a death certificate and, if necessary, for forensic investigations. In the Netherlands victims are identified by the Dutch disaster victim identification team, which is part of the national forensic investigation team ('Landelijk Team Forensische Opsporing'). Ante-mortem data are collected during the identification process; these include the victim's specific medical characteristics and the DNA profile of the victim and their family members. The victim's own doctor can play an important role in the ante-mortem investigation because of his or her knowledge of their personal medical details, and of the possible availability of samples for establishing a DNA profile. The ante-mortem data are then compared with post-mortem data. For a definitive identification at least 1 primary identification characteristic has to be established from the physical remains - dermatoglyphics, the DNA profile or the dental status.

  18. Reacquire Identify and Localize Swimmers

    Science.gov (United States)

    2008-09-30

    Reacquire Identify and Localize Swimmers Rick Vosburgh Nekton Research LLC 4625 Industry Lane Durham, NC 27707 phone: 919-405-3993...are benched tested and integrated for higher level system bench testing, followed thereafter by in water testing. WORK COMPLETED Work at Nekton ...ORGANIZATION NAME(S) AND ADDRESS(ES) Nekton Research LLC,4625 Industry Lane,Durham,NC,27707 8. PERFORMING ORGANIZATION REPORT NUMBER 9. SPONSORING

  19. Identifiability of Compound Poisson Distributions

    OpenAIRE

    Xekalaki, Evdokia; Panaretos, John

    1983-01-01

    Compound Poisson distributions (CPD's) are frequently used as alternatives in studying situations where a simple Poisson model is found inadequate to describe. In this paper an attempt is made to identify compound Poisson distributions when it is known that the conditional distribution of two random variables (r.v.'s) is compound binomial. Some interesting special cases and their application to accident theory are discussed.

  20. New criteria to identify spectrum

    Indian Academy of Sciences (India)

    R. Narasimhan (Krishtel eMaging) 1461 1996 Oct 15 13:05:22

    This enables us to give new criteria to identify spectral types of self-adjoint operators on Hilbert spaces, especially those of ... of a self-adjoint operator H on a (separable) Hilbert space H. Associated with H is the spectral measure E(·). ..... Now the spaces Lp((c, d)), 0 < p < 1, are metric spaces with the metric d(f, g) = f − g p p.

  1. Identifying vertex covers in graphs

    DEFF Research Database (Denmark)

    Henning, Michael A.; Yeo, Anders

    2012-01-01

    An identifying vertex cover in a graph G is a subset T of vertices in G that has a nonempty intersection with every edge of G such that T distinguishes the edges, that is, e∩T ≠ 0 for every edge e in G and e∩T ≠ f∩T for every two distinct edges e and f in G. The identifying vertex cover number TD......(G) of G is the minimum size of an identifying vertex cover in G. We observe that TD(G)+ρ(G) = |V (G)|, where ρ(G) denotes the packing number of G. We conjecture that if G is a graph of order n and size m with maximum degree Δ, then TD(G) ≤(Δ(Δ-1)/ Δ2+1)n + (2/Δ2+1) m. If the conjecture is true......, then the bound is best possible for all Δ ≥ 1. We prove this conjecture when Δ ≥ 1 and G is a Δ-regular graph. The three known Moore graphs of diameter 2, namely the 5-cycle, the Petersen graph and the Hoffman-Singleton graph, are examples of regular graphs that achieves equality in the upper bound. We also...

  2. Identifying flares in rheumatoid arthritis

    DEFF Research Database (Denmark)

    Bykerk, Vivian P; Bingham, Clifton O; Choy, Ernest H

    2016-01-01

    to flare, with escalation planned in 61%. CONCLUSIONS: Flares are common in rheumatoid arthritis (RA) and are often preceded by treatment reductions. Patient/MD/DAS agreement of flare status is highest in patients worsening from R/LDA. OMERACT RA flare questions can discriminate between patients with...... Set. METHODS: Candidate flare questions and legacy measures were administered at consecutive visits to Canadian Early Arthritis Cohort (CATCH) patients between November 2011 and November 2014. The American College of Rheumatology (ACR) core set indicators were recorded. Concordance to identify flares...

  3. Identifiable piezoelectric security system design

    Science.gov (United States)

    Li, Zhenyu; Zhang, Xiaoming

    2017-10-01

    Directing at the disadvantages of low environmental suitability, inferior anti-interference ability and being easy to be found and destroyed in existing security product, a kind of identifiable piezoelectric security system based on piezoelectric cable is designed. The present system gathers vibration signals of different moving bodies, such as human, vehicles, animals and so on, with piezoelectric cable buried under -ground and distinguishes the different moving bodies through recognition algorithm and thus giving an alarm. As is shown in experiments, the present system has the features of good concealment and high accuracy in distinguishing moving bodies.

  4. Identifying teaching in wild animals.

    Science.gov (United States)

    Thornton, Alex; Raihani, Nichola J

    2010-08-01

    After a long period of neglect, the study of teaching in nonhuman animals is beginning to take a more prominent role in research on social learning. Unlike other forms of social learning, teaching requires knowledgeable individuals to play an active role in facilitating learning by the naive. Casting aside anthropocentric requirements for cognitive mechanisms assumed to underpin teaching in our own species, researchers are now beginning to discover evidence for teaching across a wide range of taxa. Nevertheless, unequivocal evidence for teaching remains scarce, with convincing experimental data limited to meerkats, pied babblers, and tandem-running ants. In this review, our aim is to stimulate further research in different species and contexts by providing conceptual and methodological guidelines for identifying teaching, with a focus on natural populations. We begin by highlighting the fact that teaching is a form of cooperative behavior that functions to promote learning in others and show that consideration of these key characteristics is critical in helping to identify suitable targets for future research. We then go on to discuss potential observational, experimental, and statistical techniques that may assist researchers in providing evidence that the criteria that make up the accepted operational definition of teaching have been met. Supplemental materials for this article may be downloaded from http://lb.psychonomic-journals.org/content/supplemental.

  5. Featured Image: Identifying Weird Galaxies

    Science.gov (United States)

    Kohler, Susanna

    2017-08-01

    Hoags Object, an example of a ring galaxy. [NASA/Hubble Heritage Team/Ray A. Lucas (STScI/AURA)]The above image (click for the full view) shows PanSTARRSobservationsof some of the 185 galaxies identified in a recent study as ring galaxies bizarre and rare irregular galaxies that exhibit stars and gas in a ring around a central nucleus. Ring galaxies could be formed in a number of ways; one theory is that some might form in a galaxy collision when a smaller galaxy punches through the center of a larger one, triggering star formation around the center. In a recent study, Ian Timmis and Lior Shamir of Lawrence Technological University in Michigan explore ways that we may be able to identify ring galaxies in the overwhelming number of images expected from large upcoming surveys. They develop a computer analysis method that automatically finds ring galaxy candidates based on their visual appearance, and they test their approach on the 3 million galaxy images from the first PanSTARRS data release. To see more of the remarkable galaxies the authors found and to learn more about their identification method, check out the paper below.CitationIan Timmis and Lior Shamir 2017 ApJS 231 2. doi:10.3847/1538-4365/aa78a3

  6. Identifying infection hotspots early on.

    Science.gov (United States)

    Shabha, Ghasson

    2012-04-01

    According to many published studies, 'ducting in ventilation and air-conditioning are largely overlooked and ignored, as they are out of sight and out of mind', despite mounting evidence indicating a higher risk in spreading airborne infections'. So says Ghasson Shabha BSc (Arch) MSc, PhD (Arch), MBIFM, Associate CIBSE, PG Cert Ed, of the Faculty of Technology, Engineering and the Environment (TEE), at the Birmingham School of the Built Environment (BSBE) at Birmingham City University, who adds that CIBSE estimates that fewer than 5% of buildings with air-conditioning systems above 12 kW have been inspected so far. Here he argues that incorporating 3D building information modelling software into existing computer-aided facilities management software systems will enable hospitals' 'infection hotspots' to be far more quickly identified, and subsequently monitored, to prevent future problems.

  7. Identifying Causality from Alarm Observations

    DEFF Research Database (Denmark)

    Kirchhübel, Denis; Zhang, Xinxin; Lind, Morten

    on an abstracted model of the mass and energy flows in the system. The application of MFM for root cause analysis based alarm grouping has been demonstrated and can be extended to reason about the direction of causality considering the entirety of the alarms present in the system for more comprehensive decision...... and consequences. This extended analysis results in causal paths from likely root causes to tentative consequences, providing the operator with a comprehensive tool to not only identify but also rank the criticality of a large number of concurrent alarms in the system....... support. This contribution presents the foundation for combining the cause and consequence propagation of multiple observations from the system based on an MFM model. The proposed logical reasoning matches actually observed alarms to the propagation analysis in MFM to distinguish plausible causes...

  8. Identifying methamphetamine exposure in children.

    Science.gov (United States)

    Castaneto, Marisol S; Barnes, Allan J; Scheidweiler, Karl B; Schaffer, Michael; Rogers, Kristen K; Stewart, Deborah; Huestis, Marilyn A

    2013-12-01

    Methamphetamine (MAMP) use, distribution, and manufacture remain a serious public health and safety problem in the United States, and children environmentally exposed to MAMP face a myriad of developmental, social, and health risks, including severe abuse and neglect necessitating child protection involvement. It is recommended that drug-endangered children receive medical evaluation and care with documentation of overall physical and mental conditions and have urine drug testing. The primary aim of this study was to determine the best biological matrix to detect MAMP, amphetamine (AMP), methylenedioxymethamphetamine (MDMA), methylenedioxyamphetamine (MDA), and 3,4-methylenedioxyethylamphetamine (MDEA) in environmentally exposed children. Ninety-one children, environmentally exposed to household MAMP intake, were medically evaluated at the Child and Adolescent Abuse Resource and Evaluation Diagnostic and Treatment Center at the University of California, Davis Children's Hospital. MAMP, AMP, MDMA, MDA, and MDEA were quantified in urine and oral fluid (OF) by gas chromatography mass spectrometry and in hair by liquid chromatography tandem mass spectrometry. Overall drug detection rates in OF, urine, and hair were 6.9%, 22.1%, and 77.8%, respectively. Seventy children (79%) tested positive for 1 or more drugs in 1 or more matrices. MAMP was the primary analyte detected in all 3 biological matrices. All positive OF (n = 5), and 18 of 19 positive urine specimens also had a positive hair test. Hair analysis offered a more sensitive tool for identifying MAMP, AMP, and MDMA environmental exposure in children than urine or OF testing. A negative urine or hair test does not exclude the possibility of drug exposure, but hair testing provided the greatest sensitivity for identifying drug-exposed children.

  9. RECOVIR Software for Identifying Viruses

    Science.gov (United States)

    Chakravarty, Sugoto; Fox, George E.; Zhu, Dianhui

    2013-01-01

    Most single-stranded RNA (ssRNA) viruses mutate rapidly to generate a large number of strains with highly divergent capsid sequences. Determining the capsid residues or nucleotides that uniquely characterize these strains is critical in understanding the strain diversity of these viruses. RECOVIR (an acronym for "recognize viruses") software predicts the strains of some ssRNA viruses from their limited sequence data. Novel phylogenetic-tree-based databases of protein or nucleic acid residues that uniquely characterize these virus strains are created. Strains of input virus sequences (partial or complete) are predicted through residue-wise comparisons with the databases. RECOVIR uses unique characterizing residues to identify automatically strains of partial or complete capsid sequences of picorna and caliciviruses, two of the most highly diverse ssRNA virus families. Partition-wise comparisons of the database residues with the corresponding residues of more than 300 complete and partial sequences of these viruses resulted in correct strain identification for all of these sequences. This study shows the feasibility of creating databases of hitherto unknown residues uniquely characterizing the capsid sequences of two of the most highly divergent ssRNA virus families. These databases enable automated strain identification from partial or complete capsid sequences of these human and animal pathogens.

  10. NIH Researchers Identify OCD Risk Gene

    Science.gov (United States)

    ... News From NIH NIH Researchers Identify OCD Risk Gene Past Issues / Summer 2006 Table of Contents For ... and Alcoholism (NIAAA) have identified a previously unknown gene variant that doubles an individual's risk for obsessive- ...

  11. Congenital Heart Diseases associated with Identified Syndromes ...

    African Journals Online (AJOL)

    BACKGROUND: Congenital heart diseases are commonly associated with other extra cardiac congenital malformations. OBJECTIVE: To identify congenital heart diseases associated with identified syndromes and other extra cardiac congenital malformations in children in our hospital. METHODS: A prospective descriptive ...

  12. Psychosocial counselling of identifiable sperm donors

    NARCIS (Netherlands)

    Visser, M.; Mochtar, M.H.; de Melker, A.A.; van der Veen, F.; Repping, S.; Gerrits, T.

    2016-01-01

    STUDY QUESTION: What do identifiable sperm donors feel about psychosocial counselling? SUMMARY ANSWER: Identifiable sperm donors found it important that psychosocial counselling focused on emotional consequences and on rules and regulations and they expected to have access to psychosocial

  13. Ability of Slovakian Pupils to Identify Birds

    Science.gov (United States)

    Prokop, Pavol; Rodak, Rastislav

    2009-01-01

    A pupil's ability to identify common organisms is necessary for acquiring further knowledge of biology. We investigated how pupils were able to identify 25 bird species following their song, growth habits, or both features presented simultaneously. Just about 19% of birds were successfully identified by song, about 39% by growth habit, and 45% of…

  14. On Vertex Identifying Codes For Infinite Lattices

    OpenAIRE

    Stanton, Brendon

    2011-01-01

    PhD Thesis--A compilation of the papers: "Lower Bounds for Identifying Codes in Some Infinite Grids", "Improved Bounds for r-identifying Codes of the Hex Grid", and "Vertex Identifying Codes for the n-dimensional Lattics" along with some other results

  15. De-identifying an EHR Database

    DEFF Research Database (Denmark)

    Lauesen, Søren; Pantazos, Kostas; Lippert, Søren

    2011-01-01

    -identified a Danish EHR database with 437,164 patients. The goal was to generate a version with real medical records, but related to artificial persons. We developed a de-identification algorithm that uses lists of named entities, simple language analysis, and special rules. Our algorithm consists of 3 steps: collect...... lists of identifiers from the database and external resources, define a replacement for each identifier, and replace identifiers in structured data and free text. Some patient records could not be safely de-identified, so the de-identified database has 323,122 patient records with an acceptable degree...... of anonymity, readability and correctness (F-measure of 95%). The algorithm has to be adjusted for each culture, language and database....

  16. Identifying Information Focuses in Listening Comprehension

    Science.gov (United States)

    Zhang, Hong-yan

    2011-01-01

    The study explains the process of learners' listening comprehension within Halliday's information theory in functional grammar, including the skills of identifying focuses while listening in college English teaching. Identifying information focuses in listening is proved to improve the students' communicative listening ability by the means of a…

  17. Identifying Needs and Opportunities for Local Government ...

    African Journals Online (AJOL)

    However, policy and legislation fall short of identifying the range of a priori competences required by local government officials and environmental managers before well intended policy can be translated into effective practice. This paper reports on recent research into identifying the underlying competences required for ...

  18. EZID: Long term identifiers made easy (Invited)

    Science.gov (United States)

    Starr, J.

    2013-12-01

    Scholarly research is producing ever increasing amounts of digital research data, and this data should be managed throughout the research life cycle both as part of good scientific practice, but also to comply with funder mandates, such as the 2013 OSTP Public Access Memo (http://www.whitehouse.gov/sites/default/files/microsites/ostp/ostp_public_access_memo_2013.pdf). By assigning unique and persistent identifiers to data objects, data managers can gain control and flexibility over what can be a daunting task. This is due to the fact that the objects can be moved to new locations without disruption to links, as long as the identifier target is maintained. EZID is a tool that makes assigning and maintaining unique, persistent identifiers easy. It was designed and built by California Digital Library (CDL) and has both a user interface and a RESTful API. EZID currently offers services for two globally unique, persistent identifier schemes: Digital Object Identifiers (DOIs) and Archival Resource Keys (ARKs). DOIs are identifiers originating from the publishing world and are in widespread use for journal articles. CDL is able to offer DOIs because of being a founding member of DataCite (http://www.datacite.org/), an international consortium established to provide easier access to scientific research data on the Internet. ARKs are identifiers originating from the library, archive and museum community. Like DOIs, they become persistent when the objects and identifier forwarding information is maintained. DOIs and ARKs have a key role in data management and, therefore, in data management plans. DOIs are the recommended identifier for use in data citation, and ARKs provide the maximum flexibility needed for data documentation and management throughout the early phases of a project. The two identifier schemes are able to be used together, and EZID is made to work with both. EZID clients, coming from education, research, government, and the private sector, are utilizing the

  19. Structural Identifiability of Dynamic Systems Biology Models.

    Science.gov (United States)

    Villaverde, Alejandro F; Barreiro, Antonio; Papachristodoulou, Antonis

    2016-10-01

    A powerful way of gaining insight into biological systems is by creating a nonlinear differential equation model, which usually contains many unknown parameters. Such a model is called structurally identifiable if it is possible to determine the values of its parameters from measurements of the model outputs. Structural identifiability is a prerequisite for parameter estimation, and should be assessed before exploiting a model. However, this analysis is seldom performed due to the high computational cost involved in the necessary symbolic calculations, which quickly becomes prohibitive as the problem size increases. In this paper we show how to analyse the structural identifiability of a very general class of nonlinear models by extending methods originally developed for studying observability. We present results about models whose identifiability had not been previously determined, report unidentifiabilities that had not been found before, and show how to modify those unidentifiable models to make them identifiable. This method helps prevent problems caused by lack of identifiability analysis, which can compromise the success of tasks such as experiment design, parameter estimation, and model-based optimization. The procedure is called STRIKE-GOLDD (STRuctural Identifiability taKen as Extended-Generalized Observability with Lie Derivatives and Decomposition), and it is implemented in a MATLAB toolbox which is available as open source software. The broad applicability of this approach facilitates the analysis of the increasingly complex models used in systems biology and other areas.

  20. Communicating identifiability risks to biobank donors

    DEFF Research Database (Denmark)

    Kasperbauer, T. J.; Gjerris, Mickey; Waldemar, Gunhild

    2018-01-01

    can track individuals across multiple databases. This article focuses on the communication of identifiability risks in the process of obtaining consent for donation and research. Most ethical discussions of identifiability risks have focused on the severity of the risk and how it might be mitigated......, and what precisely is at stake in pervasive data sharing. However, there has been little discussion of whether and how to communicate the risk to potential donors. We review the ethical arguments behind favoring different types of risk communication in the consent process, and outline how identifiability...... concerns can be incorporated into either a detailed or a simplified method of communicating risks during the consent process....

  1. Identifying Codes on Directed De Bruijn Graphs

    Science.gov (United States)

    2015-08-27

    JOURNAL ARTICLE (POST PRINT) 3. DATES COVERED (From - To) JUN 2013 – AUG 2015 4. TITLE AND SUBTITLE IDENTIFYING CODES ON DIRECTED DE BRUIJN GRAPHS 5a...owner. 14. ABSTRACT For a directed graph G, a t-identifying code is a subset S ⊆ V (G) with the property that for each vertex v ∈ V (G) the set of...vertices of S reachable from v by a directed path of length at most t is both non-empty and unique. A graph is called t- identifiable if there exists a

  2. Discrimination of SM-identified individuals.

    Science.gov (United States)

    Wright, Susan

    2006-01-01

    The belief that sadomasochism (SM) is violence or abusive behavior has resulted in harassment, physical attacks, and discrimination against SM-identified individuals. Historically, they were often opposed by self-identified feminists. One reason the women who practiced SM were targeted was the official opposition to sadomasochistic practices promulgated by the National Organization for Women (NOW). Current statistics of incidents of discrimination, harassment and physical attacks against SM-identified individuals and SM groups are compiled by the National Coalition for Sexual Freedom (NCSF).

  3. Identifying Polarity in Different Text Types

    OpenAIRE

    Hille Pajupuu; Rene Altrov; Jaan Pajupuu

    2016-01-01

    While Sentiment Analysis aims to identify the writer’s attitude toward individuals, events or topics, our aim is to predict the possible effect of a written text on the reader. For this purpose, we created an automatic identifier of the polarity of Estonian texts, which is independent of domain and of text type. Depending on the approach chosen – lexicon-based or machine learning – the identifier uses either a lexicon of words with a positive or negative connotation, or a text corpus where or...

  4. Identifying structural damage with ground penetrating radar

    CSIR Research Space (South Africa)

    Van Schoor, Abraham M

    2008-07-01

    Full Text Available Ground penetrating radar (GPR) and electrical resistance tomography (ERT) surveys were conducted in an urban environment in an attempt to identify the cause of severe structural damage to a historically significant residential property...

  5. Identifying regional opportunities for accelerated timber managemnet

    Science.gov (United States)

    David A. Gansner; Joseph E. Barnard; Samuel F. Gingrich; Samuel F. Gingrich

    1973-01-01

    Describes a procedure for identifying regional opportunities for accelerated timber management and demonstrates its application. Results provide a basis for rational choices among alternative management strategies and permit meaningful micro- and macro-evaluations of treatment response.

  6. Identifying knowledge in decision-making processes

    DEFF Research Database (Denmark)

    Jensen, Anna Rose Vagn; Ahmed-Kristensen, Saeema

    2010-01-01

    Managing knowledge reflects the innovation capability of a company. Mapping decision processes and links to knowledge is a way to learn more in structuring knowledge in innovation processes. Through an empirical study the paper aims to identify knowledge...

  7. Identifying Early Diagnosis Markers of Prostate Cancer

    National Research Council Canada - National Science Library

    Huang, Shuang

    2004-01-01

    .... We reasoned that the success and accuracy in early diagnosis of prostate cancer may be significantly improved if a panel of prostate cancer-specific markers can be identified and used in combination...

  8. Study Identifies New Lymphoma Treatment Target

    Science.gov (United States)

    NCI researchers have identified new therapeutic targets for diffuse large B-cell lymphoma. Drugs that hit these targets are under clinical development and the researchers hope to begin testing them in clinical trials of patients with DLBCL.

  9. Identifiable Data Files - Health Outcomes Survey (HOS)

    Data.gov (United States)

    U.S. Department of Health & Human Services — The Medicare Health Outcomes Survey (HOS) identifiable data files are comprised of the entire national sample for a given 2-year cohort (including both respondents...

  10. Identifiable reparametrizations of linear compartment models

    OpenAIRE

    Meshkat, Nicolette; Sullivant, Seth

    2013-01-01

    Identifiability concerns finding which unknown parameters of a model can be quantified from given input-output data. Many linear ODE models, used in systems biology and pharmacokinetics, are unidentifiable, which means that parameters can take on an infinite number of values and yet yield the same input-output data. We use commutative algebra and graph theory to study a particular class of unidentifiable models and find conditions to obtain identifiable scaling reparametrizations of these mod...

  11. ORCID Author Identifiers: A Primer for Librarians.

    Science.gov (United States)

    Akers, Katherine G; Sarkozy, Alexandra; Wu, Wendy; Slyman, Alison

    2016-01-01

    The ORCID (Open Researcher and Contributor ID) registry helps disambiguate authors and streamline research workflows by assigning unique 16-digit author identifiers that enable automatic linkages between researchers and their scholarly activities. This article describes how ORCID works, the benefits of using ORCID, and how librarians can promote ORCID at their institutions by raising awareness of ORCID, helping researchers create and populate ORCID profiles, and integrating ORCID identifiers into institutional repositories and other university research information systems.

  12. Identifying Motivational Factors within a Multinational Company

    OpenAIRE

    Daniela Bradutanu

    2011-01-01

    The aim of the study is to identify the main motivational factors within a multinational company. The first objective is to identify work functions, formulated on Abraham Maslow’s pyramid, following the identification of the key characteristics that motivate an employee at the work place and last, but not least, the type of motivation that employees focus, intrinsic or extrinsic. The research method targeted a questionnaire based survey, including various company employees and an interv...

  13. Connecting Research and Researchers: ORCID Identifiers (Invited)

    Science.gov (United States)

    Haak, L.; Bryant, R.

    2013-12-01

    Lack of standards for identification of researchers is a major challenge for the research community. It is difficult not only to unambiguously associate researchers with their own work, but also to track use and re-use of those works. The goal of ORCID (orcid.org) is to connect research with researchers, ultimately saving researchers time in entering data, improving discoverability, and facilitating the flow of research information and data re-use. ORCID is a community-driven non-profit organization that provides an open registry of unique persistent identifiers for researchers. We work collaboratively with the research community to embed these identifiers in research workflows, including manuscript submission, grant application, and data set deposit. In this presentation, we will provide an overview of ORCID, an in particular how it is being used as a switchboard to connect existing but fragmented researcher identifiers. ORCID also provides researchers search and link tools to link their ORCID identifier to their existing datasets, grants, other research works, and an automated method to link new works to their identifier. ORCID is fundamental to solving the name ambiguity problem for researchers and scholars. Together with unique and persistent identifiers for publications, data sets, and research samples, ORCID is an essential underpinning needed to support interoperability between research systems.

  14. Distributed design approach in persistent identifiers systems

    Science.gov (United States)

    Golodoniuc, Pavel; Car, Nicholas; Klump, Jens

    2017-04-01

    The need to identify both digital and physical objects is ubiquitous in our society. Past and present persistent identifier (PID) systems, of which there is a great variety in terms of technical and social implementations, have evolved with the advent of the Internet, which has allowed for globally unique and globally resolvable identifiers. PID systems have catered for identifier uniqueness, integrity, persistence, and trustworthiness, regardless of the identifier's application domain, the scope of which has expanded significantly in the past two decades. Since many PID systems have been largely conceived and developed by small communities, or even a single organisation, they have faced challenges in gaining widespread adoption and, most importantly, the ability to survive change of technology. This has left a legacy of identifiers that still exist and are being used but which have lost their resolution service. We believe that one of the causes of once successful PID systems fading is their reliance on a centralised technical infrastructure or a governing authority. Golodoniuc et al. (2016) proposed an approach to the development of PID systems that combines the use of (a) the Handle system, as a distributed system for the registration and first-degree resolution of persistent identifiers, and (b) the PID Service (Golodoniuc et al., 2015), to enable fine-grained resolution to different information object representations. The proposed approach solved the problem of guaranteed first-degree resolution of identifiers, but left fine-grained resolution and information delivery under the control of a single authoritative source, posing risk to the long-term availability of information resources. Herein, we develop these approaches further and explore the potential of large-scale decentralisation at all levels: (i) persistent identifiers and information resources registration; (ii) identifier resolution; and (iii) data delivery. To achieve large-scale decentralisation

  15. Scalable persistent identifier systems for dynamic datasets

    Science.gov (United States)

    Golodoniuc, P.; Cox, S. J. D.; Klump, J. F.

    2016-12-01

    Reliable and persistent identification of objects, whether tangible or not, is essential in information management. Many Internet-based systems have been developed to identify digital data objects, e.g., PURL, LSID, Handle, ARK. These were largely designed for identification of static digital objects. The amount of data made available online has grown exponentially over the last two decades and fine-grained identification of dynamically generated data objects within large datasets using conventional systems (e.g., PURL) has become impractical. We have compared capabilities of various technological solutions to enable resolvability of data objects in dynamic datasets, and developed a dataset-centric approach to resolution of identifiers. This is particularly important in Semantic Linked Data environments where dynamic frequently changing data is delivered live via web services, so registration of individual data objects to obtain identifiers is impractical. We use identifier patterns and pattern hierarchies for identification of data objects, which allows relationships between identifiers to be expressed, and also provides means for resolving a single identifier into multiple forms (i.e. views or representations of an object). The latter can be implemented through (a) HTTP content negotiation, or (b) use of URI querystring parameters. The pattern and hierarchy approach has been implemented in the Linked Data API supporting the United Nations Spatial Data Infrastructure (UNSDI) initiative and later in the implementation of geoscientific data delivery for the Capricorn Distal Footprints project using International Geo Sample Numbers (IGSN). This enables flexible resolution of multi-view persistent identifiers and provides a scalable solution for large heterogeneous datasets.

  16. Identifying glass compositions in fly ash

    Directory of Open Access Journals (Sweden)

    Katherine eAughenbaugh

    2016-01-01

    Full Text Available In this study, four Class F fly ashes were studied with a scanning electron microscope; the glassy phases were identified and their compositions quantified using point compositional analysis with k-means clustering and multispectral image analysis. The results showed that while the bulk oxide contents of the fly ashes were different, the four fly ashes had somewhat similar glassy phase compositions. Aluminosilicate glasses (AS, calcium aluminosilicate glasses (CAS, a mixed glass, and, in one case, a high iron glass were identified in the fly ashes. Quartz and iron crystalline phases were identified in each fly ash as well. The compositions of the three main glasses identified, AS, CAS, and mixed glass, were relatively similar in each ash. The amounts of each glass were varied by fly ash, with the highest calcium fly ash containing the most of calcium-containing glass. Some of the glasses were identified as intermixed in individual particles, particularly the calcium-containing glasses. Finally, the smallest particles in the fly ashes, with the most surface area available to react in alkaline solution, such as when mixed with portland cement or in alkali-activated fly ash, were not different in composition than the large particles, with each of the glasses represented. The method used in the study may be applied to a fly ash of interest for use as a cementing material in order to understand its potential for reactivity.

  17. Identifying Geographic Clusters: A Network Analytic Approach

    CERN Document Server

    Catini, Roberto; Penner, Orion; Riccaboni, Massimo

    2015-01-01

    In recent years there has been a growing interest in the role of networks and clusters in the global economy. Despite being a popular research topic in economics, sociology and urban studies, geographical clustering of human activity has often studied been by means of predetermined geographical units such as administrative divisions and metropolitan areas. This approach is intrinsically time invariant and it does not allow one to differentiate between different activities. Our goal in this paper is to present a new methodology for identifying clusters, that can be applied to different empirical settings. We use a graph approach based on k-shell decomposition to analyze world biomedical research clusters based on PubMed scientific publications. We identify research institutions and locate their activities in geographical clusters. Leading areas of scientific production and their top performing research institutions are consistently identified at different geographic scales.

  18. Identifying motivational factors within a multinational company

    Directory of Open Access Journals (Sweden)

    Daniela Bradutanu

    2011-08-01

    Full Text Available The aim of the study is to identify the main motivational factors within a multinational company. The first objective is to identify work functions, formulated on Abraham Maslow’s pyramid, following the identification of the key characteristics that motivate an employee at the work place and last, but not least, the type of motivation that employees focus, intrinsic or extrinsic. The research method targeted a questionnaire based survey, including various company employees and an interview with the manager. The results confirmed that in Romania, employees put great emphasis on extrinsic motivation, a certain income and job security being primary. These results have implications for managers that in order to effectively motivate staff, first, must know their needs and expectations. To identify the main needs and motivational factors we had as a starting point Maslow's pyramid.

  19. Migraineurs were reliably identified using administrative data.

    Science.gov (United States)

    van Walraven, Carl; Colman, Ian

    2016-03-01

    Migraine is a common and important source of pain and disability in society. Accurately identifying such people using routinely collected health data would be beneficial for health services research. Externally validate a previously published method to identify migraineurs using health administrative data; and determine if a better model can be derived using data-mining techniques. Migraine status was determined for Ontarians participating in a population-based, cross-sectional survey. Consenting participants were linked to population-based health administrative data to identify age, sex, and coded diagnoses. Discrimination and calibration measures were used to appraise the models. A de novo technique we term "double threshold analysis" was used to determine optimal lower and upper expected probabilities to identify migraine status in the newly derived model. A total of 1,01,114 people (mean age 46 years, 46% male) were included in the study, of which 11,314 (11.2%) had migraines. Using data-driven parameter estimates, the previous model to identify migraineurs had adequate discrimination (c-statistic 0.707 [95% CI 0.701-0.712]) and calibration (Hosmer-Lemeshow [H-L] statistic 20.8). A new model that included diagnostic code scores for physician visits, emergency visits, and hospitalizations with nonlinear terms for age and interactions significantly improved the model (c-statistic 0.724 [0.716-0.733], 16.4). Categorizing all people with a predicted migraine probability less than 10% or greater than 90% as without and having the disease, respectively, resulted in a sensitivity of 3.1%, a specificity of 99.96%, and a positive predictive value of 81.0% while capturing 57.0% of the cohort and 29.3% of migraineurs. A previously derived model to identify migraineurs was improved using data-mining techniques permitting accurate cohort identification using routinely collected health administrative data. Copyright © 2016 Elsevier Inc. All rights reserved.

  20. Identifying polymer states by machine learning

    Science.gov (United States)

    Wei, Qianshi; Melko, Roger G.; Chen, Jeff Z. Y.

    2017-03-01

    The ability of a feed-forward neural network to learn and classify different states of polymer configurations is systematically explored. Performing numerical experiments, we find that a simple network model can, after adequate training, recognize multiple structures, including gaslike coil, liquidlike globular, and crystalline anti-Mackay and Mackay structures. The network can be trained to identify the transition points between various states, which compare well with those identified by independent specific-heat calculations. Our study demonstrates that neural networks provide an unconventional tool to study the phase transitions in polymeric systems.

  1. Minimal covariant observables identifying all pure states

    Energy Technology Data Exchange (ETDEWEB)

    Carmeli, Claudio, E-mail: claudio.carmeli@gmail.com [D.I.M.E., Università di Genova, Via Cadorna 2, I-17100 Savona (Italy); I.N.F.N., Sezione di Genova, Via Dodecaneso 33, I-16146 Genova (Italy); Heinosaari, Teiko, E-mail: teiko.heinosaari@utu.fi [Turku Centre for Quantum Physics, Department of Physics and Astronomy, University of Turku (Finland); Toigo, Alessandro, E-mail: alessandro.toigo@polimi.it [Dipartimento di Matematica, Politecnico di Milano, Piazza Leonardo da Vinci 32, I-20133 Milano (Italy); I.N.F.N., Sezione di Milano, Via Celoria 16, I-20133 Milano (Italy)

    2013-09-02

    It has been recently shown by Heinosaari, Mazzarella and Wolf (2013) [1] that an observable that identifies all pure states of a d-dimensional quantum system has minimally 4d−4 outcomes or slightly less (the exact number depending on d). However, no simple construction of this type of minimal observable is known. We investigate covariant observables that identify all pure states and have minimal number of outcomes. It is shown that the existence of this kind of observables depends on the dimension of the Hilbert space.

  2. Psychosocial counselling of identifiable sperm donors.

    Science.gov (United States)

    Visser, M; Mochtar, M H; de Melker, A A; van der Veen, F; Repping, S; Gerrits, T

    2016-05-01

    What do identifiable sperm donors feel about psychosocial counselling? Identifiable sperm donors found it important that psychosocial counselling focused on emotional consequences and on rules and regulations and they expected to have access to psychosocial counselling at the time that donor-offspring actually sought contact. Most studies on sperm donors are on anonymous donors and focus on recruitment, financial compensation, anonymity and motivations. There is limited knowledge on the value that identifiable sperm donors place on psychosocial counselling and what their needs are in this respect. We performed a qualitative study from March until June 2014 with 25 identifiable sperm donors, who were or had been a donor at the Centre for Reproductive Medicine of the Academic Medical Centre in Amsterdam any time between 1989 and 2014. We held semi-structured in-depth interviews with identifiable sperm donors with an average age of 44 years. The interviews were fully transcribed and analysed using the constant comparative method of grounded theory. Twelve out of 15 donors (former donors ITALIC! n = 8, active donors ITALIC! n = 7) who had received a counselling session during their intake procedure found it important that they had been able to talk about issues such as the emotional consequences of donation, disclosure to their own children, family and friends, future contact with donor-offspring and rules and regulations. Of the 10 former donors who had received no counselling session, 8 had regretted the lack of intensive counselling. In the years following their donation, most donors simply wanted to know how many offspring had been born using their sperm and had no need for further counselling. Nevertheless, they frequently mentioned that they were concerned about the well-being of 'their' offspring. In addition, they would value the availability of psychosocial counselling in the event that donor-offspring actually sought contact. A limitation of our study is its

  3. Neoplasms identified in free-flying birds

    Science.gov (United States)

    Siegfried, L.M.

    1983-01-01

    Nine neoplasms were identified in carcasses of free-flying wild birds received at the National Wildlife Health Laboratory; gross and microscopic descriptions are reported herein. The prevalence of neoplasia in captive and free-flying birds is discussed, and lesions in the present cases are compared with those previously described in mammals and birds.

  4. Identifying Ethical Hypernorms for Accounting Educators

    Science.gov (United States)

    Siegel, Philip H.; Mintz, Steven; Naser-Tavakolian, Mohsen; O'Shaughnessy, John

    2012-01-01

    Accounting educators have a unique role in academe because students learn about codes of ethics that will guide their actions as professionals. We identify hypernorms related to internal auditing educators that reflect unethical behaviors believed to be universally unacceptable by that community. We then compare the results to a prior survey of…

  5. Identifying motifs in folktales using topic models

    NARCIS (Netherlands)

    Karsdorp, F.; Bosch, A.P.J. van den

    2013-01-01

    With the undertake of various folktale digitalization initiatives, the need for computational aids to explore these collections is increasing. In this paper we compare Labeled LDA (L-LDA) to a simple retrieval model on the task of identifying motifs in folktales. We show that both methods are well

  6. Identifiability and Equivalence of GLLIRM Models

    Science.gov (United States)

    Revuelta, Javier

    2009-01-01

    The generalized logit-linear item response model (GLLIRM) is a linearly constrained nominal categories model (NCM) that computes the scale and intercept parameters for categories as a weighted sum of basic parameters. This paper addresses the problems of the identifiability of the basic parameters and the equivalence between different GLLIRM…

  7. Some technological properties of phenotypically identified ...

    African Journals Online (AJOL)

    STORAGESEVER

    2009-12-15

    Dec 15, 2009 ... In this study, a total of 39 enterococci strains were isolated and identified as 17 Enterococcus faecium. (43.58%), 11 Enterococcus faecalis (28.21%) and 11 Enterococcus durans (28.21%) strains from 28. Tulum cheese samples from Isparta, Turkey. Three E. faecium (EYT6, EYT21 and EYT34) and 1 E.

  8. Identifying the Multiple Intelligences of Your Students

    Science.gov (United States)

    McClellan, Joyce A.; Conti, Gary J.

    2008-01-01

    One way of addressing individual differences among adult learners is to identify the Multiple Intelligences of the learner. Multiple Intelligences refers to the concept developed by Howard Gardner that challenges the traditional view of intelligence and explains the presence of nine different Multiple Intelligences. The purpose of this study was…

  9. Identifying marker typing incompatibilities in linkage analysis

    Energy Technology Data Exchange (ETDEWEB)

    Stringham, H.M.; Boehnke, M. [Univ. of Michigan, Ann Arbor, MI (United States)

    1996-10-01

    A common problem encountered in linkage analyses is that execution of the computer program is halted because of genotypes in the data that are inconsistent with Mendelian inheritance. Such inconsistencies may arise because of pedigree errors or errors in typing. In some cases, the source of the inconsistencies is easily identified by examining the pedigree. In others, the error is not obvious, and substantial time and effort are required to identify the responsible genotypes. We have developed two methods for automatically identifying those individuals whose genotypes are most likely the cause of the inconsistencies. First, we calculate the posterior probability of genotyping error for each member of the pedigree, given the marker data on all pedigree members and allowing anyone in the pedigree to have an error. Second, we identify those individuals whose genotypes could be solely responsible for the inconsistency in the pedigree. We illustrate these methods with two examples: one a pedigree error, the second a genotyping error. These methods have been implemented as a module of the pedigree analysis program package MENDEL. 9 refs., 2 figs., 2 tabs.

  10. Diagnostics Tools Identify Faults Prior to Failure

    Science.gov (United States)

    2013-01-01

    Through the SBIR program, Rochester, New York-based Impact Technologies LLC collaborated with Ames Research Center to commercialize the Center s Hybrid Diagnostic Engine, or HyDE, software. The fault detecting program is now incorporated into a software suite that identifies potential faults early in the design phase of systems ranging from printers to vehicles and robots, saving time and money.

  11. The external muon identifier (EMI) for BEBC

    CERN Multimedia

    1977-01-01

    This detector identifies muons produced in neutrino interactions in BEBC. Whereas hadrons are absorbed in the iron shield around BEBC, muons penetrate and are detected in a 150 m2 layer of proportional chambers, each equipped with three sensitive planes, i.e. two anode wire and one cathode plane.

  12. A Method to Identify Occupational Stereotypes.

    Science.gov (United States)

    Workman, Jane E.; Freeburg, Elizabeth W.

    1997-01-01

    Occupational stereotypes of automobile salespersons were identified through a review of media articles and cartoons and concept mapping by college students. Clothing and appearance cues and personal attributes were statistically analyzed. Content-, construct-, and criterion-related evidence supported the validity of the content of the stereotype…

  13. Identifying gastrooesophageal reflux disease in infants.

    Science.gov (United States)

    Patience, Sara

    2012-11-01

    This article will look at the similarities between normal baby behaviours, and normal physiological gastro-oesophageal reflux (GOR) and GORD, giving the practitioner evidence-based information to offer reassurance to parents. It will also look at conservative management of the common symptoms of GOR, and try to identify why this condition can cause confusion among health professionals and parents.

  14. Identifying Advanced Technologies for Education's Future.

    Science.gov (United States)

    Moore, Gwendolyn B.; Yin, Robert K.

    A study to determine how three advanced technologies might be applied to the needs of special education students helped inspire the development of a new method for identifying such applications. This new method, named the "Hybrid Approach," combines features of the two traditional methods: technology-push and demand-pull. Technology-push involves…

  15. Identifying Foods causing Allergies/ Intolerances among Diabetic ...

    African Journals Online (AJOL)

    Objective: This study was designed to identify the foods that caused allergies / intolerances and symptoms of reaction experienced by diabetic patients attending State Specialist Hospital, Akure. Materials and Methods: Ninety-eight diabetics aged 30-80 years (30 males and 68 females) were included in the study.

  16. Teaching science students to identify entrepreneurial opportunities

    NARCIS (Netherlands)

    Nab, J.

    2015-01-01

    This dissertation describes a research project on teaching science students to identify entrepreneurial opportunities, which is a core competence for entrepreneurs that should be emphasized in education. This research consists of four studies. The first case study aims at finding design strategies

  17. Teachers' Ability to Accurately Identify Disordered Voices.

    Science.gov (United States)

    Davis, Catherine N.; Harris, Timothy B.

    1992-01-01

    This study, with 45 elementary school classroom teachers and 64 elementary education majors, found that the classroom teachers were able to consistently identify children with disordered voices. Students were somewhat inclined to underrefer children with possible voice disorders. (Author/DB)

  18. How to Identify High-Growth Schools

    Science.gov (United States)

    Pfeiffer, Linda E.

    2015-01-01

    When researching school options, parents may want to look for schools with high-growth scores which, according to research, may be indicators of other characteristics such as programming, leadership, culture, and size. This quick guide offers parents tips on how to identify high-growth schools and what to ask when evaluating school options. An…

  19. 34 CFR 300.32 - Personally identifiable.

    Science.gov (United States)

    2010-07-01

    ... 34 Education 2 2010-07-01 2010-07-01 false Personally identifiable. 300.32 Section 300.32 Education Regulations of the Offices of the Department of Education (Continued) OFFICE OF SPECIAL EDUCATION AND REHABILITATIVE SERVICES, DEPARTMENT OF EDUCATION ASSISTANCE TO STATES FOR THE EDUCATION OF...

  20. Identifying Indicators of Student Development in College

    Science.gov (United States)

    El Hassan, Karma

    2008-01-01

    The purpose of this study is to investigate the effect of college on student goals and aspirations, in addition to identifying the determinants of overall quality of instruction, satisfaction with college in general, and the predictors of various aspects of student self-reported growth (intellectual, personal, social, preparation for further…

  1. Identifying acid-base and electrolyte imbalances.

    Science.gov (United States)

    Gooch, Michael D

    2015-08-15

    Acid-base and electrolyte imbalances often complicate patient management in acute care settings. Correctly identifying the imbalance and its cause is vital. This article will review the physiology of acid-base and electrolyte balance, their common disturbances, associated causes, clinical manifestations, and management implications for nurse practitioners.

  2. Identifying the Rhetoric of Uncertainty Reduction.

    Science.gov (United States)

    Williams, David E.

    Offering a rhetorical perspective of uncertainty reduction, this paper (1) discusses uncertainty reduction theory and dramatism; (2) identifies rhetorical strategies inherent in C. W. Berger and R. J. Calabrese's theory; (3) extends predicted outcome value to influenced outcome value; and (4) argues that the goal of uncertainty reduction and…

  3. Identifying Critical Dimensions for Discriminating among Rapists.

    Science.gov (United States)

    Prentky, Robert A.; Knight, Raymond A.

    1991-01-01

    Notes that sexual aggression is determined by multiplicity of variables and that convicted sexual offenders are markedly heterogeneous. Surveys offender and nonoffender sexual aggression research for evidence about which dimensions should be included in multivariate models that attempt to discriminate rapists from nonrapists, to identify subgroups…

  4. Identifying Barriers to Study Abroad Program Participation

    Science.gov (United States)

    McKinley, Karen E.

    2014-01-01

    University administrators, industry professionals, and government leaders encourage college students to participate in study abroad programs. Despite an increase in the number of students going abroad, the percentage of students participating in global programs remain low. This study identified barriers to study abroad program participation at a…

  5. Identifying systematic DFT errors in catalytic reactions

    DEFF Research Database (Denmark)

    Christensen, Rune; Hansen, Heine Anton; Vegge, Tejs

    2015-01-01

    Using CO2 reduction reactions as examples, we present a widely applicable method for identifying the main source of errors in density functional theory (DFT) calculations. The method has broad applications for error correction in DFT calculations in general, as it relies on the dependence of the ...

  6. Learning environments matter: Identifying influences on the ...

    African Journals Online (AJOL)

    The study therefore explored the impact of six motivational factors for science learning in a sample of 380 Grade Nine boys and girls from three racial groups, in both public and independent schools. The students completed the Student Motivation for Science Learning questionnaire. Significant differences were identified ...

  7. 10 Ways to Identify Hearing Loss

    Science.gov (United States)

    ... of this page please turn JavaScript on. Feature: Hearing Loss 10 Ways to Identify Hearing Loss Past Issues / Spring 2015 Table of Contents If ... gov Internet: www.nidcd.nih.gov Read More "Hearing Loss" Articles Managing Hearing Loss / Symptoms, Devices, Prevention & Research / ...

  8. Identifying personal microbiomes using metagenomic codes.

    Science.gov (United States)

    Franzosa, Eric A; Huang, Katherine; Meadow, James F; Gevers, Dirk; Lemon, Katherine P; Bohannan, Brendan J M; Huttenhower, Curtis

    2015-06-02

    Community composition within the human microbiome varies across individuals, but it remains unknown if this variation is sufficient to uniquely identify individuals within large populations or stable enough to identify them over time. We investigated this by developing a hitting set-based coding algorithm and applying it to the Human Microbiome Project population. Our approach defined body site-specific metagenomic codes: sets of microbial taxa or genes prioritized to uniquely and stably identify individuals. Codes capturing strain variation in clade-specific marker genes were able to distinguish among 100s of individuals at an initial sampling time point. In comparisons with follow-up samples collected 30-300 d later, ∼30% of individuals could still be uniquely pinpointed using metagenomic codes from a typical body site; coincidental (false positive) matches were rare. Codes based on the gut microbiome were exceptionally stable and pinpointed >80% of individuals. The failure of a code to match its owner at a later time point was largely explained by the loss of specific microbial strains (at current limits of detection) and was only weakly associated with the length of the sampling interval. In addition to highlighting patterns of temporal variation in the ecology of the human microbiome, this work demonstrates the feasibility of microbiome-based identifiability-a result with important ethical implications for microbiome study design. The datasets and code used in this work are available for download from huttenhower.sph.harvard.edu/idability.

  9. Professional Development: Identifying Effective Instructional Coaching Activities

    Science.gov (United States)

    Mannino, Gina

    2014-01-01

    The purpose of this study was to identify the instructional coaching activities most used by instructional coaches in southeast Texas school districts and to test if there was a relationship between the use of instructional coaching and perceived improvement in the instructional practices of teachers and student achievement. The participants for…

  10. Biogeographic methods identify gymnosperm biodiversity hotspots.

    Science.gov (United States)

    Contreras-Medina, R; Morrone, J J; Lunz Vega, I

    2001-10-01

    A remarkable congruence among areas of endemism, panbiogeographic nodes, and refugia in western North America, Japan, south-western China, Tasmania, and New Caledonia indicates that these areas deserve special status for conservation. Here we propose that areas identified by different biogeographic methods are significant candidates for designation as hotspots.

  11. Klebsiella pneumoniae antibiotic resistance identified by atomic ...

    Indian Academy of Sciences (India)

    In particular, we studied Klebsiella pneumoniae bacteria provided by the Lavagna Hospital ASL4Liguria (Italy), where there are cases linked with antibiotics resistance of the Klebsiella pneumoniae. By comparing AFMimages of bacteria strains treated with different antibiotics is possible to identify unambiguously the ...

  12. Learning environments matter: Identifying influences on the ...

    African Journals Online (AJOL)

    Hennie

    Learning environments matter: Identifying influences on the motivation to learn science. Salomé Schulze. Department of Psychology of Education, University of South Africa, Pretoria Campus, South Africa. Schuls@unisa.ac.za. Mark van Heerden. Department of Science and Technology Education, University of South Africa, ...

  13. Understanding intercellular communication in the brain: Identified ...

    Indian Academy of Sciences (India)

    Understanding intercellular communication in the brain: Identified neuromuscular synapses of the fruitfly. Drosophila serve as a model. The transmission of information between nerve cells in the brain takes place at specialized sites of contact, the synapses. Spatial interactions between synapses and temporal modulation of ...

  14. A screening cascade to identify ERβ ligands.

    Science.gov (United States)

    Filgueira, Carly S; Benod, Cindy; Lou, Xiaohua; Gunamalai, Prem S; Villagomez, Rosa A; Strom, Anders; Gustafsson, Jan-Åke; Berkenstam, Anders L; Webb, Paul

    2014-01-01

    The establishment of effective high throughput screening cascades to identify nuclear receptor (NR) ligands that will trigger defined, therapeutically useful sets of NR activities is of considerable importance. Repositioning of existing approved drugs with known side effect profiles can provide advantages because de novo drug design suffers from high developmental failure rates and undesirable side effects which have dramatically increased costs. Ligands that target estrogen receptor β (ERβ) could be useful in a variety of diseases ranging from cancer to neurological to cardiovascular disorders. In this context, it is important to minimize cross-reactivity with ERα, which has been shown to trigger increased rates of several types of cancer. Because of high sequence similarities between the ligand binding domains of ERα and ERβ, preferentially targeting one subtype can prove challenging. Here, we describe a sequential ligand screening approach comprised of complementary in-house assays to identify small molecules that are selective for ERβ. Methods include differential scanning fluorimetry, fluorescence polarization and a GAL4 transactivation assay. We used this strategy to screen several commercially-available chemical libraries, identifying thirty ERβ binders that were examined for their selectivity for ERβ versus ERα, and tested the effects of selected ligands in a prostate cancer cell proliferation assay. We suggest that this approach could be used to rapidly identify candidates for drug repurposing.

  15. Identifying Obstetrical Emergencies at Kintampo Municipal Hospital ...

    African Journals Online (AJOL)

    A hospital based cross-sectional qualitative study was conducted at Kintampo Municipal Hospital in Northern Ghana, to identify obstetric emergencies and barriers to emergency care seeking; examine the perspective of midwives regarding their role in maternity care and management of obstetric emergencies, and explore ...

  16. Identifying Business Opportunities | Ovadje | LBS Management ...

    African Journals Online (AJOL)

    ... to distinguish between a nice idea and a real opportunity. Important sources of business opportunities are identified: unsatisfied needs due to the difficult economic environment, and new avenues opened by changes in government regulations, demography and technology. LBS Management Review Vol.6(2) 2001: 82-88 ...

  17. Identifying Tinnitus Subgroups With Cluster Analysis

    Science.gov (United States)

    Tyler, Richard; Coelho, Claudia; Tao, Pan; Ji, Haihong; Noble, William; Gehringer, Anne; Gogel, Stephanie

    2009-01-01

    Purpose We believe it is important to uncover tinnitus subgroups to identify subsets of patients most likely to benefit from different treatments. We review strategies for subgrouping based on etiology, subjective reports, the audiogram, psychoacoustics, imaging, and cluster analysis. Method Preliminary results of a 2-step cluster analysis based on 246 participants from whom we had 26 categorical and 25 continuous variables were determined. Results A 4-cluster solution suggested the following subgroups: (a) constant distressing tinnitus, (b) varying tinnitus that is worse in noise, (c) tinnitus patients who are copers and whose tinnitus is not influenced by touch (somatic modulation), and (d) tinnitus patients who are copers but whose tinnitus is worse in quiet environments. Conclusions Subgroups of tinnitus patients can be identified by using statistical approaches. The subgroups we identify here represent a preliminary attempt at identifying such patients. One next step would be to explore clinical trials of tinnitus treatments based on subgroup analyses or on using subgroups in the selection criteria. PMID:19056922

  18. On identifying codes in partial linear spaces

    OpenAIRE

    Araujo-Pardo, Gabriela; Montejano, Luis; Camino, Balbuena; Valenzuela, Juan Carlos

    2011-01-01

    Let (P,L, I) be a partial linear space and X ⊆ P ∪ L. Let us denote by (X)I = x∈X{y : yIx} and by [X] = (X)I ∪ X. With this terminology a partial linear space (P,L, I) is said to admit a (1,≤ k)-identifying code if the sets [X] are mutually different for all X ⊆ P ∪L with |X| ≤ k. In this paper we give a characterization of k-regular partial linear spaces admitting a (1,≤ k)-identifying code. Equivalently, we give a characterization of k-regular bipartite graphs of girth at least six admit...

  19. Persistent Identifiers for Dutch cultural heritage institutions

    Science.gov (United States)

    Ras, Marcel; Kruithof, Gijsbert

    2016-04-01

    Over the past years, more and more collections belonging to archives, libraries, media, museums, and knowledge institutes are being digitised and made available online. These are exciting times for ALM institutions. They are realising that, in the information society, their collections are goldmines. Unfortunately most heritage institutions in the Netherlands do not yet meet the basic preconditions for long-term availability of their collections. The digital objects often have no long lasting fixed reference yet. URL's and web addresses change. Some digital objects that were referenced in Europeana and other portals can no longer be found. References in scientific articles have a very short life span, which is damaging for scholarly research. In 2015, the Dutch Digital Heritage Network (NDE) has started a two-year work program to co-ordinate existing initiatives in order to improve the (long-term) accessibility of the Dutch digital heritage for a wide range of users, anytime, anyplace. The Digital Heritage Network is a partnership established on the initiative of the Ministry of Education, Culture and Science. The members of the NDE are large, national institutions that strive to professionally preserve and manage digital data, e.g. the National Library, The Netherlands Institute for Sound and Vision, the Netherlands Cultural Heritage Agency, the Royal Netherlands Academy of Arts and Sciences, the National Archive of the Netherlands and the DEN Foundation, and a growing number of associations and individuals both within and outside the heritage sector. By means of three work programmes the goals of the Network should be accomplished and improve the visibility, the usability and the sustainability of digital heritage. Each programme contains of a set of projects. Within the sustainability program a project on creating a model for persistent identifiers is taking place. The main goals of the project are (1) raise awareness among cultural heritage institutions on the

  20. Methodological issues in identifying sexuality for research.

    Science.gov (United States)

    Ridner, S Lee; Topp, Robert; Frost, Karen L

    2007-03-01

    Sexuality is a complex concept that can be measured based on various aspects. Depending on the variable of interest, investigators may wish to focus on sexual behavior (activity), sexual orientation (attraction to a particular gender), or sexual identity (self-identification with a particular group of people). Further complicating the process is the fact that these aspects of sexuality are not always congruent with one another. Lesbian, gay, and bisexuals (LGB) are sexual minorities that have been identified as one of several groups that experience health disparities. For researchers working with the LGB population, properly identifying and defining which aspect of sexuality is of interest to the investigator is paramount in obtaining accurate outcomes.

  1. Identifying Critical States through the Relevance Index

    Directory of Open Access Journals (Sweden)

    Andrea Roli

    2017-02-01

    Full Text Available The identification of critical states is a major task in complex systems, and the availability of measures to detect such conditions is of utmost importance. In general, criticality refers to the existence of two qualitatively different behaviors that the same system can exhibit, depending on the values of some parameters. In this paper, we show that the relevance index may be effectively used to identify critical states in complex systems. The relevance index was originally developed to identify relevant sets of variables in dynamical systems, but in this paper, we show that it is also able to capture features of criticality. The index is applied to two prominent examples showing slightly different meanings of criticality, namely the Ising model and random Boolean networks. Results show that this index is maximized at critical states and is robust with respect to system size and sampling effort. It can therefore be used to detect criticality.

  2. Identifying pelagic ecosystem indicators for management

    DEFF Research Database (Denmark)

    Trenkel, Verena; Hintzen, Niels; Rindorf, Anna

    2013-01-01

    When exploiting fish populations under the ecosystem approach, aiming for MSY is not necessarily sufficient to ensure wider ecosystem sustainability. All of the large stocks of pelagic fish are managed through harvest control rules based on an MSY approach. Ensuring good environmental status...... will probably require further constraints to be imposed by management. Most of the current paradigm with regards to GES for fisheries has been based on demersal fish. Pelagic fisheries and fish are operationally and biologically respectively different. We use the example of applying the ecosystem approach...... to pelagic fisheries to further explore the setting of management objectives. The objectives were identified through a participatory process including industry, management, scientist and NGO representatives. These objectives were used to identify appropriate driver, pressure and state indicators. The links...

  3. Identifying bilingual semantic neural representations across languages

    Science.gov (United States)

    Buchweitz, Augusto; Shinkareva, Svetlana V.; Mason, Robert A.; Mitchell, Tom M.; Just, Marcel Adam

    2015-01-01

    The goal of the study was to identify the neural representation of a noun's meaning in one language based on the neural representation of that same noun in another language. Machine learning methods were used to train classifiers to identify which individual noun bilingual participants were thinking about in one language based solely on their brain activation in the other language. The study shows reliable (p languages. It also shows that the stable voxels used to classify the brain activation were located in areas associated with encoding information about semantic dimensions of the words in the study. The identification of the semantic trace of individual nouns from the pattern of cortical activity demonstrates the existence of a multi-voxel pattern of activation across the cortex for a single noun common to both languages in bilinguals. PMID:21978845

  4. Identifying Topics in Microblogs Using Wikipedia.

    Science.gov (United States)

    Yıldırım, Ahmet; Üsküdarlı, Suzan; Özgür, Arzucan

    2016-01-01

    Twitter is an extremely high volume platform for user generated contributions regarding any topic. The wealth of content created at real-time in massive quantities calls for automated approaches to identify the topics of the contributions. Such topics can be utilized in numerous ways, such as public opinion mining, marketing, entertainment, and disaster management. Towards this end, approaches to relate single or partial posts to knowledge base items have been proposed. However, in microblogging systems like Twitter, topics emerge from the culmination of a large number of contributions. Therefore, identifying topics based on collections of posts, where individual posts contribute to some aspect of the greater topic is necessary. Models, such as Latent Dirichlet Allocation (LDA), propose algorithms for relating collections of posts to sets of keywords that represent underlying topics. In these approaches, figuring out what the specific topic(s) the keyword sets represent remains as a separate task. Another issue in topic detection is the scope, which is often limited to specific domain, such as health. This work proposes an approach for identifying domain-independent specific topics related to sets of posts. In this approach, individual posts are processed and then aggregated to identify key tokens, which are then mapped to specific topics. Wikipedia article titles are selected to represent topics, since they are up to date, user-generated, sophisticated articles that span topics of human interest. This paper describes the proposed approach, a prototype implementation, and a case study based on data gathered during the heavily contributed periods corresponding to the four US election debates in 2012. The manually evaluated results (0.96 precision) and other observations from the study are discussed in detail.

  5. The Complexity of Identifying Large Equivalence Classes

    DEFF Research Database (Denmark)

    Skyum, Sven; Frandsen, Gudmund Skovbjerg; Miltersen, Peter Bro

    1999-01-01

    We prove that at least 3k−4/k(2k−3)(n/2) – O(k)equivalence tests and no more than 2/k (n/2) + O(n) equivalence tests are needed in the worst case to identify the equivalence classes with at least k members in set of n elements. The upper bound is an improvement by a factor 2 compared to known res...

  6. Which functional unit to identify sustainable foods?

    Science.gov (United States)

    Masset, Gabriel; Vieux, Florent; Darmon, Nicole

    2015-09-01

    In life-cycle assessment, the functional unit defines the unit for calculation of environmental indicators. The objective of the present study was to assess the influence of two functional units, 100 g and 100 kcal (420 kJ), on the associations between three dimensions for identifying sustainable foods, namely environmental impact (via greenhouse gas emissions (GHGE)), nutritional quality (using two distinct nutrient profiling systems) and price. GHGE and price data were collected for individual foods, and were each expressed per 100 g and per 100 kcal. Two nutrient profiling models, SAIN,LIM and UK Ofcom, were used to assess foods' nutritional quality. Spearman correlations were used to assess associations between variables. Sustainable foods were identified as those having more favourable values for all three dimensions. The French Individual and National Dietary Survey (INCA2), 2006-2007. Three hundred and seventy-three foods highly consumed in INCA2, covering 65 % of total energy intake of adult participants. When GHGE and price were expressed per 100 g, low-GHGE foods had a lower price and higher SAIN,LIM and Ofcom scores (r=0·59, -0·34 and -0·43, respectively), suggesting a compatibility between the three dimensions; 101 and 100 sustainable foods were identified with SAIN,LIM and Ofcom, respectively. When GHGE and price were expressed per 100 kcal, low-GHGE foods had a lower price but also lower SAIN,LIM and Ofcom scores (r=0·67, 0·51 and 0·47, respectively), suggesting that more environment-friendly foods were less expensive but also less healthy; thirty-four sustainable foods were identified with both SAIN,LIM and Ofcom. The choice of functional unit strongly influenced the compatibility between the sustainability dimensions and the identification of sustainable foods.

  7. Identifying mechanistic similarities in drug responses

    KAUST Repository

    Zhao, C.

    2012-05-15

    Motivation: In early drug development, it would be beneficial to be able to identify those dynamic patterns of gene response that indicate that drugs targeting a particular gene will be likely or not to elicit the desired response. One approach would be to quantitate the degree of similarity between the responses that cells show when exposed to drugs, so that consistencies in the regulation of cellular response processes that produce success or failure can be more readily identified.Results: We track drug response using fluorescent proteins as transcription activity reporters. Our basic assumption is that drugs inducing very similar alteration in transcriptional regulation will produce similar temporal trajectories on many of the reporter proteins and hence be identified as having similarities in their mechanisms of action (MOA). The main body of this work is devoted to characterizing similarity in temporal trajectories/signals. To do so, we must first identify the key points that determine mechanistic similarity between two drug responses. Directly comparing points on the two signals is unrealistic, as it cannot handle delays and speed variations on the time axis. Hence, to capture the similarities between reporter responses, we develop an alignment algorithm that is robust to noise, time delays and is able to find all the contiguous parts of signals centered about a core alignment (reflecting a core mechanism in drug response). Applying the proposed algorithm to a range of real drug experiments shows that the result agrees well with the prior drug MOA knowledge. © The Author 2012. Published by Oxford University Press. All rights reserved.

  8. Electroencephalographic identifiers of motor adaptation learning

    OpenAIRE

    Özdenizci, Ozan; Ozdenizci, Ozan; Yalçın, Mustafa; Yalcin, Mustafa; Erdoğan, Ahmetcan; Erdogan, Ahmetcan; PATOĞLU, Volkan; Patoglu, Volkan; Grosse-Wentrup, Moritz; Çetin, Müjdat; Cetin, Mujdat

    2017-01-01

    Objective. Recent brain-computer interface (BCI) assisted stroke rehabilitation protocols tend to focus on sensorimotor activity of the brain. Relying on evidence claiming that a variety of brain rhythms beyond sensorimotor areas are related to the extent of motor deficits, we propose to identify neural correlates of motor learning beyond sensorimotor areas spatially and spectrally for further use in novel BCI-assisted neurorehabilitation settings. Approach. Electroencephalographic (EEG) data...

  9. Efforts to identify spore forming bacillus

    Energy Technology Data Exchange (ETDEWEB)

    Zuleiha, M.S.; Hilmy, N. (National Atomic Energy Agency, Jakarta (Indonesia). Pasar Djumat Research Centre)

    1982-04-01

    Efforts to identify 47 species of radioresistant spore forming bacillus sp. isolated from locally produced medical devices have been carried out. The identifications was conducted using 19 kinds of biochemical tests and compared to species to bacillus subtilis W. T.; bacillus pumilus E 601 and bacillus sphaericus Csub(I)A. The results showed that bacillus sp. examined could be divided into 6 groups, i.e. bacillus cereus; bacillus subtilis; bacillus stearothermophylus; bacillus coagulans; bacillus sphaericus and bacillus circulans.

  10. Identifying Topics in Microblogs Using Wikipedia.

    Directory of Open Access Journals (Sweden)

    Ahmet Yıldırım

    Full Text Available Twitter is an extremely high volume platform for user generated contributions regarding any topic. The wealth of content created at real-time in massive quantities calls for automated approaches to identify the topics of the contributions. Such topics can be utilized in numerous ways, such as public opinion mining, marketing, entertainment, and disaster management. Towards this end, approaches to relate single or partial posts to knowledge base items have been proposed. However, in microblogging systems like Twitter, topics emerge from the culmination of a large number of contributions. Therefore, identifying topics based on collections of posts, where individual posts contribute to some aspect of the greater topic is necessary. Models, such as Latent Dirichlet Allocation (LDA, propose algorithms for relating collections of posts to sets of keywords that represent underlying topics. In these approaches, figuring out what the specific topic(s the keyword sets represent remains as a separate task. Another issue in topic detection is the scope, which is often limited to specific domain, such as health. This work proposes an approach for identifying domain-independent specific topics related to sets of posts. In this approach, individual posts are processed and then aggregated to identify key tokens, which are then mapped to specific topics. Wikipedia article titles are selected to represent topics, since they are up to date, user-generated, sophisticated articles that span topics of human interest. This paper describes the proposed approach, a prototype implementation, and a case study based on data gathered during the heavily contributed periods corresponding to the four US election debates in 2012. The manually evaluated results (0.96 precision and other observations from the study are discussed in detail.

  11. Identifying Tracks Duplicates via Neural Network

    CERN Document Server

    Sunjerga, Antonio; CERN. Geneva. EP Department

    2017-01-01

    The goal of the project is to study feasibility of state of the art machine learning techniques in track reconstruction. Machine learning techniques provide promising ways to speed up the pattern recognition of tracks by adding more intelligence in the algorithms. Implementation of neural network to process of track duplicates identifying will be discussed. Different approaches are shown and results are compared to method that is currently in use.

  12. Caracterização cariológica de palmeiras do gênero Butia (Arecaceae Karyological characterization of Butia (Arecaceae palm trees

    Directory of Open Access Journals (Sweden)

    Lauís Brisolara Corrêa

    2009-12-01

    Full Text Available O butiá é um fruto nativo muito consumido no Sul do País, sendo comum encontrá-lo como frutífera cultivada. no Rio Grande do Sul, ocorrem cinco espécies de palmeiras deste gênero. o número cromossômico de Butia eriospatha e de B. odorata é descrito pela primeira vez. B. capitata e B. yatay tiveram seu número cromossômico descrito anteriormente, apesar de seu cariótipo nunca ter sido reportado antes, e B. paraguayensis não concordou com a contagem anterior. Este trabalho teve como objetivo analisar as características cromossômicas dentro e entre cinco espécies deste gênero, sendo nove exemplares de B. capitata, três de B. eriospatha, três de B. odorata, dois de B. paraguayensis e dois de B. yatay. Foram coletados frutos de populações naturais, cujas sementes foram colocadas para germinar. os meristemas apicais radiculares das plântulas foram submetidos aos pré-tratamentos 8-hidroxiquinoleína 0,002M, água a 0ºC e colchicina 1%, sendo fixadas em solução fresca de etanol e ácido acético glacial 3:1 (v/v e coradas em solução Giemsa 2%. Todas as espécies estudadas apresentam o mesmo número cromossômico, 2n = 2x = 32, possuindo também a mesma fórmula cariotípica: 14 cromossomos metacêntricos, 12 submetacêntricos e 6 acrocêntricos. os cariótipos de todas as espécies são simétricos, apresentando dois pares de cromossomos satelitados, um par de cromossomos metacêntricos satelitados e um par de acrocêntricos também satelitados.Butiá is a native fruit which is a lot used in the Southern of Brazil and it is usually harvested like crop fruit. Five species of native palm trees of the genus Butia occur in Rio Grande do Sul state, Brazil. Chromosome numbers and karyotype of Butia eriospatha and B. odorata are being reported for the first time. B. capitata and B. yatay had the chromosome numbers previously described, although its karyotype has never been reported before and B. paraguayensis coincided not with the early count. Fruits from natural populations were collected; the seeds were extracted and put to germinate. The aim of this paper was to analyze the chromosomical features between and into five species of this genus. Nine specimens of B. capitata, three of B. eriospatha, three of B. odorata, two of B. paraguayensis and two of B. yatay were analyzed. Root tips from seedlings were pretreated in 0.002M 8-hydroxyquinoline or icy water (0ºC or 1% colchicine, fixed in ethanol and acetic acid (3:1 and then stained in 2% Giemsa. All species showed the same chromosome number, 2n = 2x = 32, and the same chromosome morphology: 14 metacentric, 12 submetacentric and 6 acrocentric chromosomes. Karyotypes of all species are symetric, with two pairs of sattelite, one pair of metacentric and one pair of acrocentric chromosomes.

  13. Chemical constituents from roots and leaf stalks of acai (Euterpe precatoria Mart., Arecaceae); Constituintes quimicos da raiz e do talo da folha do acai (Euterpe precatoria Mart., Arecaceae)

    Energy Technology Data Exchange (ETDEWEB)

    Galotta, Ana Lucia Queiroz de Assis [Universidade Federal do Amazonas, Manaus, AM (Brazil). Inst. de Ciencias Exatas. Dept. de Quimica; Boaventura, Maria Amelia Diamantino [Universidade Federal de Minas Gerais, Belo Horizonte, MG (Brazil). Dept. de Quimica]. E-mail: dianadb@dedalus.lcc.ufmg.br

    2005-07-15

    Phytochemical investigation of the hexane, ethyl acetate and methanolic extracts of roots and leaf stalks of Euterpe precatoria Mart. (acai), afforded stigmast-4-en-6{beta}-ol-3-one (3); p-hydroxy benzoic acid (4); 3{beta}-O-D-glucopyranosyl-sitosterol (5); {beta}-sitosterol palmitate (6); mixtures of {beta}-sitosterol and stigmasterol (1 and 2), {alpha}-, {beta}-amyrin and lupeol (7, 8 and 9), friedelin-3-one and 28-hydroxy-friedelin-3-one (10 and 11) and {alpha}-, {beta}-D-glucose (12, 13). Except for 1, 2 and 4, the other isolated constituents are described in the genus for the first time. Compounds 3 and 5 gave good results in the brine shrimp bioassay, which detects compounds with potential uses as antitumor agents, pesticides, etc.. (author)

  14. Morfometria das fibras das folhas de Astrocaryum murumuru var. murumuru Mart. (ARECACEAE Leaf fibers morphometry of Astrocaryum murumuru var. murumuru Mart. (ARECACEAE

    Directory of Open Access Journals (Sweden)

    Clarisse Beltrão Rosas Rocha

    2007-01-01

    Full Text Available A análise morfométrica das fibras das folhas de Astrocaryum murumuru var. murumuru Mart. revelou que as fibras do pecíolo apresentaram comprimento e espessura da parede superiores às regiões da ráquis e folíolo, com médias variando de 1.266,09 µm a 3.270,56 µm e 5,56 µm a 10,67 µm, respectivamente. Em relação ao índice de Runckel e coeficiente de flexibilidade, as regiões pecíolo e ráquis obtiveram valores considerados favoráveis para sua utilização na indústria papeleira e, o índice de enfeltramento demonstrou que provavelmente as fibras dessas regiões apresentarão uma boa resistência ao rasgo quando submetidas às avaliações físico-mecânicas. Diante dos resultados, a espécie se revela promissora como fonte alternativa de matéria-prima para a produção de papel, sendo necessários, entretanto, estudos de resistências físico-mecânicas a consolidação deste pré-diagnóstico.The analysis morphometric of the leaf fibers of Astrocaryum murumuru var. murumuru Mart. demonstrated that the petiole's fibers had presented length and wall thickness superiors than the rachis and leaflets, with yours means varying of 1.266,09 µm to 3.270,56 µm and 5,56 µm to 10,67 µm, respectively. In relation the index of Runckel and flexibility's coefficient the petiole and rachis had gotten values considered favorable for its use in the paper industry and, the felting index it probably demonstrated that the fibers of these regions will present good crash resistance when submitted to the evaluations physical-mechanical. therefore, the results show the species is a alternative source of raw material to produce paper, but its necessary to do physical-mechanical resistance studies to consolidate this pre diagnostic.

  15. Durabilidade natural do estipe de pupunha (Bactris gasipaes Kunth, Arecaceae II: insetos Natural durability of Bactris gasipaes Kunth (peach palm, Arecaceae stipe II: insects

    Directory of Open Access Journals (Sweden)

    Raimunda Liege Souza de Abreu

    2004-09-01

    Full Text Available Neste trabalho estão apresentados os resultados da durabilidade natural do estipe (madeira de Bactris gasipaes Kunth (pupunha, quando submetido ao ataque de insetos xilófagos, em ensaios em ambiente florestal e urbano. Foram utilizados dez palmeiras, cinco com espinhos e cinco sem espinhos, de plantios da Fazenda Experimental da Universidade Federal do Amazonas, localizada no km 40 da rodovia Manaus-Boa Vista (BR 174. De cada uma das palmeiras foram cortados três discos de aproximadamente 30 cm de espessura, retirados da base, do meio e do topo. No ambiente florestal, os discos foram distribuídos aleatoriamente, em área próxima ao plantio, no espaçamento de 0,5m, permanecendo durante 18 meses, período no qual foram efetuadas seis inspeções trimestrais para avaliar o grau de deterioração e coleta de insetos. Para o ensaio em condição urbana, os discos foram secionados axialmente para a retirada da medula e distribuídos aleatoriamente, nas posições côncava e convexa, sobre uma estrutura de madeira, localizada no Campus do INPA em Manaus, e inspecionados bimestralmente por um ano. Os resultados do ensaio no ambiente florestal indicaram que a maioria dos discos foi deteriorada por térmitas e a vida útil da base foi em torno de 18 meses, a do meio e do topo em torno de 15. As principais espécies de cupins foram: Heterotermes tenuis (Hagen (Rhinotermitidae responsável pela deterioração da parte basal, mediana e o topo; Nasutitermes similis Emerson (Termitidae que infestou a região da base e do meio; Anoplotermes sp.(Termitidae e Nasutitermes tatarandae (Holmgren (Termitidae responsáveis pela infestação da parte mediana do estipe. No ambiente urbano, o principal responsável pela deterioração das amostras foi o besouro Dinoderus bifoveolatus Wollston (Bostrichidae, e em seguida, o térmita N. similis.The durability of the stipe of Bactris gasipaes Kunth (Peach palm when under attack by xylophage insects, is evaluated in the present paper, through forest and urban environment field tests. Five palms with spines and five without spines from the Tabatinga population (Putumayo landrace were used in the experiment. Disks approximately 30 cm thick were taken from the butt, middle and top portions of each palm and distributed at random in a forest area near the INPA Peach Palm Germoplasm Bane (2º38'S 60º03'W. The time of permanence of the samples was 18 months, and in this period the disks were checked every three months to evaluate the degree of deterioration and collection of insects. In the urban condition, the same procedure was adopted, however each disk was halved to remove the centre and each half was distributed at random, one in a concave and the other in a convex position, on a wooden framework situated in the INPA's campus, Manaus, and checked bimonthly for one year. The results in the forest condition indicated that most of the disks were deteriorated by termites, and useful life of the butt portions varied around 18 months, the middle and the top around 15. The main species of termites were: Heterotermes tenuis (Hagen (Rhinotermitidae attacked the butt, middle and the top parts; Nasutitermes similis Emerson (Termitidae that infested the area of the base and of the middle; Anoplotermes sp. (Termitidae and Nasutitermes tatarandae (Holmgren (Termitidae attacked the medium part of the stipe. In the urban condition, the beetle Dinoderus bifoveolatus Wollston (Bostrichidae, was the most responsible for the deterioration of the samples, followed by the termite N. similis.

  16. Composição química das sementes de Archontophoenix alexandrae H. Wendl. & Drude (Arecaceae Seed chemical composition of Archontophoenix alexandrae H. Wendl. & Drude (Arecaceae

    Directory of Open Access Journals (Sweden)

    Maria Isabel Vallilo

    2004-10-01

    Full Text Available Sementes de Archontophoenix alexandrae extraídas de frutos coletados no Parque Estadual da Cantareira, São Paulo, foram analisadas quanto à composição química, ao perfil de ácidos graxos do óleo e aos teores de minerais, visando avaliar o seu potencial alimentício. Detectaram-se alto teor de fibras alimentares (38,80% p/p e umidade (47,72% p/p. Na fração oleosa, apesar do baixo conteúdo de óleo encontrado (2,74% p/p, predominaram os ácidos palmítico (19,80% p/p, entre os saturados, e oléico (42% p/p e linoléico (13% p/p, quanto aos insaturados. A presença, no óleo, de alfa-tocoferol (vitamina E equivalente a 4,0 mg 100 g-1 e de delta-tocoferol (1,8 mg 100 g-1 confere ao óleo certa estabilidade oxidativa. Embora contendo minerais como K, P, S, Ca, Fe, Zn, Se e Cu, lipídios e fibras alimentares, a presença do elemento Pb (2,74 mg kg-1 inviabiliza o consumo dessas sementes como alimento da avifauna e sinaliza contaminação antrópica no local de coleta.Seeds of Archontophoenix alexandrae, extracted from fruits collected at the Cantareira State Park, São Paulo, Brazil, were analyzed for chemical composition, oil fatty acids profiles and mineral content aiming to evaluate their nutritional potential. High values of dietary fibers (38.80% w/w and humidity (47.72% w/w were found. Palmitic acid (19.80% w/w was predominant among the saturated oil fraction, and oleic (42% w/w and linoleic (13% w/w among the insaturated oil fraction. The presence of alpha-tocopherol (vitamin E equivalent to 4.0mg 100g-1 and delta-tocopherol (1.8 mg 100g-1 confers some oxidative stability to the oil. Even containing minerals such as K, P, S, Ca, Zn, Se and Cu, lipids and dietary fibers, the presence of Pb (2.74mg kg-1 makes its consume unviable for avifauna, as well as it indicates anthropic contamination at the collect spot.

  17. ESGF Persistent Identifier services for CMIP6

    Science.gov (United States)

    Weigel, Tobias; Stockhause, Martina

    2017-04-01

    The Earth System Grid Federation (ESGF) has seen continued development to support the CMIP6 operational phase, which is expected to start this year with first data products to be prepared and delivered. As part ESGF services dedicated specifically to CMIP6, there are now two approaches for assigning and managing Persistent Identifiers: A low-level solution based on Handles, and a high-level solution based on DataCite DOIs. The Handle-based solution provides fine granular identifiers for every file and dataset in CMIP6, but does not facilitate citability and cannot be used to give proper credit to data authors. In contrast, DataCite DOIs are offered as a standard way of giving credit, but there is a limit to the depth of granularity to which they can be used to precisely identify the data used in a study. ESGF now offers a data cart referencing service, which can be used to assign a Handle to an individual data collection. While not citable directly, data cart collections can be used as additional references to allow everyone reading an article to discover and possibly acquire the data used. Giving proper credit is done through the already established DataCite DOIs for the supersets of data items in a cart. Creating data carts and using them in articles could partially bridge the granularity gap. The contribution will highlight the technical details of the service, present user workflows and discuss policy implications.

  18. Identifying Broadband Rotational Spectra with Neural Networks

    Science.gov (United States)

    Zaleski, Daniel P.; Prozument, Kirill

    2017-06-01

    A typical broadband rotational spectrum may contain several thousand observable transitions, spanning many species. Identifying the individual spectra, particularly when the dynamic range reaches 1,000:1 or even 10,000:1, can be challenging. One approach is to apply automated fitting routines. In this approach, combinations of 3 transitions can be created to form a "triple", which allows fitting of the A, B, and C rotational constants in a Watson-type Hamiltonian. On a standard desktop computer, with a target molecule of interest, a typical AUTOFIT routine takes 2-12 hours depending on the spectral density. A new approach is to utilize machine learning to train a computer to recognize the patterns (frequency spacing and relative intensities) inherit in rotational spectra and to identify the individual spectra in a raw broadband rotational spectrum. Here, recurrent neural networks have been trained to identify different types of rotational spectra and classify them accordingly. Furthermore, early results in applying convolutional neural networks for spectral object recognition in broadband rotational spectra appear promising. Perez et al. "Broadband Fourier transform rotational spectroscopy for structure determination: The water heptamer." Chem. Phys. Lett., 2013, 571, 1-15. Seifert et al. "AUTOFIT, an Automated Fitting Tool for Broadband Rotational Spectra, and Applications to 1-Hexanal." J. Mol. Spectrosc., 2015, 312, 13-21. Bishop. "Neural networks for pattern recognition." Oxford university press, 1995.

  19. DEVELOPMENT OF A MOLECULAR METHOD TO IDENTIFY ...

    Science.gov (United States)

    Hepatitis E virus (HEV) is an emerging pathogen that causes significant illness in the developing world. Like the hepatitis A virus, it is transmitted via the fecal-oral route and can cause short-term, acute hepatitis. In addition, hepatitis E has been found to cause a significant rate of mortality in pregnant women. Thus far, a hepatitis E outbreak has not been reported in the U. S. although a swine variant of the virus is common in Midwestern hogs. Since it will be important to identify the presence of this virus in the water supply, we have developed and are testing a reverse transcription-polymerase chain reaction (RT-PCR) method that should be able to identify all of the known HEV strains. Develop sensitive techniques to detect and identify emerging human waterborne pathogenic viruses and viruses on the CCL.Determine effectiveness of viral indicators to measure microbial quality in water matrices.Support activities: (a) culture and distribution of mammalian cells for Agency and scientific community research needs, (b) provide operator expertise for research requiring confocal and electron microscopy, (c) glassware cleaning, sterilization and biological waste disposal for the Cincinnati EPA facility, (d) operation of infectious pathogenic suite, (e) maintenance of walk-in constant temperature rooms and (f) provide Giardia cysts.

  20. Identifying familiar strangers in human encounter networks

    Science.gov (United States)

    Liang, Di; Li, Xiang; Zhang, Yi-Qing

    2016-10-01

    Familiar strangers, pairs of individuals who encounter repeatedly but never know each other, have been discovered for four decades yet lack an effective method to identify. Here we propose a novel method called familiar stranger classifier (FSC) to identify familiar strangers from three empirical datasets, and classify human relationships into four types, i.e., familiar stranger (FS), in-role (IR), friend (F) and stranger (S). The analyses of the human encounter networks show that the average number of FS one may encounter is finite but larger than the Dunbar Number, and their encounters are structurally more stable and denser than those of S, indicating the encounters of FS are not limited by the social capacity, and more robust than the random scenario. Moreover, the temporal statistics of encounters between FS over the whole time span show strong periodicity, which are diverse from the bursts of encounters within one day, suggesting the significance of longitudinal patterns of human encounters. The proposed method to identify FS in this paper provides a valid framework to understand human encounter patterns and analyse complex human social behaviors.

  1. Dynamic Method for Identifying Collected Sample Mass

    Science.gov (United States)

    Carson, John

    2008-01-01

    G-Sample is designed for sample collection missions to identify the presence and quantity of sample material gathered by spacecraft equipped with end effectors. The software method uses a maximum-likelihood estimator to identify the collected sample's mass based on onboard force-sensor measurements, thruster firings, and a dynamics model of the spacecraft. This makes sample mass identification a computation rather than a process requiring additional hardware. Simulation examples of G-Sample are provided for spacecraft model configurations with a sample collection device mounted on the end of an extended boom. In the absence of thrust knowledge errors, the results indicate that G-Sample can identify the amount of collected sample mass to within 10 grams (with 95-percent confidence) by using a force sensor with a noise and quantization floor of 50 micrometers. These results hold even in the presence of realistic parametric uncertainty in actual spacecraft inertia, center-of-mass offset, and first flexibility modes. Thrust profile knowledge is shown to be a dominant sensitivity for G-Sample, entering in a nearly one-to-one relationship with the final mass estimation error. This means thrust profiles should be well characterized with onboard accelerometers prior to sample collection. An overall sample-mass estimation error budget has been developed to approximate the effect of model uncertainty, sensor noise, data rate, and thrust profile error on the expected estimate of collected sample mass.

  2. Identifying complete RNA structural ensembles including pseudoknots.

    Science.gov (United States)

    Gupta, Aditi; Rahman, Reazur; Li, Kejie; Gribskov, Michael

    2012-02-01

    The close relationship between RNA structure and function underlines the significance of accurately predicting RNA structures from sequence information. Structural topologies such as pseudoknots are of particular interest due to their ubiquity and direct involvement in RNA function, but identifying pseudoknots is a computationally challenging problem and existing heuristic approaches usually perform poorly for RNA sequences of even a few hundred bases. We survey the performance of pseudoknot prediction methods on a data set of full-length RNA sequences representing varied sequence lengths, and biological RNA classes such as RNase P RNA, Group I Intron, tmRNA and tRNA. Pseudoknot prediction methods are compared with minimum free energy and suboptimal secondary structure prediction methods in terms of correct base-pairs, stems and pseudoknots and we find that the ensemble of suboptimal structure predictions succeeds in identifying correct structural elements in RNA that are usually missed in MFE and pseudoknot predictions. We propose a strategy to identify a comprehensive set of non-redundant stems in the suboptimal structure space of a RNA molecule by applying heuristics that reduce the structural redundancy of the predicted suboptimal structures by merging slightly varying stems that are predicted to form in local sequence regions. This reduced-redundancy set of structural elements consistently outperforms more specialized approaches.in data sets. Thus, the suboptimal folding space can be used to represent the structural diversity of an RNA molecule more comprehensively than optimal structure prediction approaches alone.

  3. Body linear traits for identifying prolific goats

    Directory of Open Access Journals (Sweden)

    Avijit Haldar

    2014-12-01

    Full Text Available Aim: The present study was conducted on prolific goat breed to identify body linear type traits that might be associated with prolificacy trait in goats. Materials and Methods: Two-stage stratified random sample survey based data were collected from 1427 non-pregnant goats with the history of single, twin and triplet litter sizes (LZ between January 2008 to February 2011 for 3 years in 68 villages located in East and North East India. Data on sixteen body linear traits were analyzed using logistic regression model to do the step-wise selection for identifying the body linear traits that could determine LZ. An average value for each identified body linear trait was determined for classifying the goats into three categories: Goats having the history of single LZ, goats having the history of twin LZ and goats having the history of triplet LZ. Results: The LZ proportions for single, twin and triplet, were 29.50, 59.14 and 11.36%, respectively, with the prolificacy rate of 181.85% in Indian Black Bengal goats. A total of eight body linear traits that could determine LZ in prolific goats were identified. Heart girth (HG measurement (>60.90 cm, paunch girth (PG (>70.22 cm, wither height (WH (>49.75 cm, neck length (>21.45 cm, ear length (>12.80 cm and distance between trochanter major (DTM bones (>12.28 cm, pelvic triangle area (PTA (>572.25 cm2 and clearance at udder (CU (>23.16 cm showed an increase likelihood of multiple LZ when compared to single LZ. Further, HG measurement (>62.29 cm, WH (>50.54 cm, PG (>71.85 cm and ear length (>13.00 cm, neck length (>22.01 cm, PTA (>589.64 cm2, CU (>23.20 cm and DTM bones (>12.47 cm were associated with increased likelihood of triplet LZ, when compared with that of twin LZ. Conclusion: HG measurement was the best discriminating factor, while PG, neck length, DTM bones, CU, PTA, WH and ear length measurements were other important factors that could be used for identifying prolific goats to achieve economic

  4. Persistent Identifiers, Discoverability and Open Science (Communication)

    Science.gov (United States)

    Murphy, Fiona; Lehnert, Kerstin; Hanson, Brooks

    2016-04-01

    Early in 2016, the American Geophysical Union announced it was incorporating ORCIDs into its submission workflows. This was accompanied by a strong statement supporting the use of other persistent identifiers - such as IGSNs, and the CrossRef open registry 'funding data'. This was partly in response to funders' desire to track and manage their outputs. However the more compelling argument, and the reason why the AGU has also signed up to the Center for Open Science's Transparency and Openness Promotion (TOP) Guidelines (http://cos.io/top), is that ultimately science and scientists will be the richer for these initiatives due to increased opportunities for interoperability, reproduceability and accreditation. The AGU has appealed to the wider community to engage with these initiatives, recognising that - unlike the introduction of Digital Object Identifiers (DOIs) for articles by CrossRef - full, enriched use of persistent identifiers throughout the scientific process requires buy-in from a range of scholarly communications stakeholders. At the same time, across the general research landscape, initiatives such as Project CRediT (contributor roles taxonomy), Publons (reviewer acknowledgements) and the forthcoming CrossRef DOI Event Tracker are contributing to our understanding and accreditation of contributions and impact. More specifically for earth science and scientists, the cross-functional Coalition for Publishing Data in the Earth and Space Sciences (COPDESS) was formed in October 2014 and is working to 'provide an organizational framework for Earth and space science publishers and data facilities to jointly implement and promote common policies and procedures for the publication and citation of data across Earth Science journals'. Clearly, the judicious integration of standards, registries and persistent identifiers such as ORCIDs and International Geo Sample Numbers (IGSNs) to the research and research output processes is key to the success of this venture

  5. Identifying Airborne Pathogens in Time to Respond

    Energy Technology Data Exchange (ETDEWEB)

    Hazi, A

    2006-01-25

    Among the possible terrorist activities that might threaten national security is the release of an airborne pathogen such as anthrax. Because the potential damage to human health could be severe, experts consider 1 minute to be an operationally useful time limit for identifying the pathogen and taking action. Many commercial systems can identify airborne pathogenic microbes, but they take days or, at best, hours to produce results. The Department of Homeland Security (DHS) and other U.S. government agencies are interested in finding a faster approach. To answer this national need, a Livermore team, led by scientist Eric Gard, has developed the bioaerosol mass spectrometry (BAMS) system--the only instrument that can detect and identify spores at low concentrations in less than 1 minute. BAMS can successfully distinguish between two related but different spore species. It can also sort out a single spore from thousands of other particles--biological and nonbiological--with no false positives. The BAMS team won a 2005 R&D 100 Award for developing the system. Livermore's Laboratory Directed Research and Development (LDRD) Program funded the biomedical aspects of the BAMS project, and the Department of Defense's Technical Support Working Group and Defense Advanced Research Project Agency funded the biodefense efforts. Developing a detection system that can analyze small samples so quickly has been challenging. Livermore engineer Vincent Riot, who worked on the BAMS project, explains, ''A typical spore weighs approximately one-trillionth of a gram and is dispersed in the atmosphere, which contains naturally occurring particles that could be present at concentrations thousands of times higher. Previous systems also had difficulty separating benign organisms from those that are pathogenic but very similar, which has resulted in false alarms''.

  6. Identifying single copy orthologs in Metazoa.

    Directory of Open Access Journals (Sweden)

    Christopher J Creevey

    2011-12-01

    Full Text Available The identification of single copy (1-to-1 orthologs in any group of organisms is important for functional classification and phylogenetic studies. The Metazoa are no exception, but only recently has there been a wide-enough distribution of taxa with sufficiently high quality sequenced genomes to gain confidence in the wide-spread single copy status of a gene.Here, we present a phylogenetic approach for identifying overlooked single copy orthologs from multigene families and apply it to the Metazoa. Using 18 sequenced metazoan genomes of high quality we identified a robust set of 1,126 orthologous groups that have been retained in single copy since the last common ancestor of Metazoa. We found that the use of the phylogenetic procedure increased the number of single copy orthologs found by over a third more than standard taxon-count approaches. The orthologs represented a wide range of functional categories, expression profiles and levels of divergence.To demonstrate the value of our set of single copy orthologs, we used them to assess the completeness of 24 currently published metazoan genomes and 62 EST datasets. We found that the annotated genes in published genomes vary in coverage from 79% (Ciona intestinalis to 99.8% (human with an average of 92%, suggesting a value for the underlying error rate in genome annotation, and a strategy for identifying single copy orthologs in larger datasets. In contrast, the vast majority of EST datasets with no corresponding genome sequence available are largely under-sampled and probably do not accurately represent the actual genomic complement of the organisms from which they are derived.

  7. Identifying novel drug indications through automated reasoning.

    Directory of Open Access Journals (Sweden)

    Luis Tari

    Full Text Available With the large amount of pharmacological and biological knowledge available in literature, finding novel drug indications for existing drugs using in silico approaches has become increasingly feasible. Typical literature-based approaches generate new hypotheses in the form of protein-protein interactions networks by means of linking concepts based on their cooccurrences within abstracts. However, this kind of approaches tends to generate too many hypotheses, and identifying new drug indications from large networks can be a time-consuming process.In this work, we developed a method that acquires the necessary facts from literature and knowledge bases, and identifies new drug indications through automated reasoning. This is achieved by encoding the molecular effects caused by drug-target interactions and links to various diseases and drug mechanism as domain knowledge in AnsProlog, a declarative language that is useful for automated reasoning, including reasoning with incomplete information. Unlike other literature-based approaches, our approach is more fine-grained, especially in identifying indirect relationships for drug indications.To evaluate the capability of our approach in inferring novel drug indications, we applied our method to 943 drugs from DrugBank and asked if any of these drugs have potential anti-cancer activities based on information on their targets and molecular interaction types alone. A total of 507 drugs were found to have the potential to be used for cancer treatments. Among the potential anti-cancer drugs, 67 out of 81 drugs (a recall of 82.7% are indeed known cancer drugs. In addition, 144 out of 289 drugs (a recall of 49.8% are non-cancer drugs that are currently tested in clinical trials for cancer treatments. These results suggest that our method is able to infer drug indications (original or alternative based on their molecular targets and interactions alone and has the potential to discover novel drug indications for

  8. Identifying opportunities in online-communities

    DEFF Research Database (Denmark)

    Hienerth, C.; Lettl, Christopher

    how this phenomenon - as manifested in user communities - can be used to derive deeper insights into the prominent phases of opportunity identification, evaluation and exploitation. We also outline how user communities create new avenues for empirical research on these early entrepreneurial processes......Previous research has identified innovation as a crucial prerequisite for early entrepreneurial processes. However, the nature of how innovations are developed is changing dramatically, as it is becoming increasingly open, collaborative and democratized. This paper demonstrates in conceptual terms....... Based on our analysis, we develop a set of hypotheses on how processes in user communities affect the outcome of entrepreneurial activities....

  9. Tools for identifying gelator scaffolds and solvents.

    Science.gov (United States)

    Zurcher, Danielle M; McNeil, Anne J

    2015-03-06

    Small molecule gelators are serendipitously discovered more often than they are designed. As a consequence, it has been challenging to develop applications based on the limited set of known materials. This synopsis highlights recent strategies to streamline the process of gelator discovery, with a focus on the role of unidirectional intermolecular interactions and solvation. We present these strategies as a series of tools that can be employed to help identify gelator scaffolds and solvents for gel formation. Overall, we suggest that this guided approach is more efficient than random derivatization and screening.

  10. Identifying endophenotypes of autism: a multivariate approach

    Science.gov (United States)

    Segovia, Fermín; Holt, Rosemary; Spencer, Michael; Górriz, Juan M.; Ramírez, Javier; Puntonet, Carlos G.; Phillips, Christophe; Chura, Lindsay; Baron-Cohen, Simon; Suckling, John

    2014-01-01

    The existence of an endophenotype of autism spectrum condition (ASC) has been recently suggested by several commentators. It can be estimated by finding differences between controls and people with ASC that are also present when comparing controls and the unaffected siblings of ASC individuals. In this work, we used a multivariate methodology applied on magnetic resonance images to look for such differences. The proposed procedure consists of combining a searchlight approach and a support vector machine classifier to identify the differences between three groups of participants in pairwise comparisons: controls, people with ASC and their unaffected siblings. Then we compared those differences selecting spatially collocated as candidate endophenotypes of ASC. PMID:24936183

  11. Identifying Relevant Studies in Software Engineering

    DEFF Research Database (Denmark)

    Zhang, He; Ali Babar, Muhammad; Tell, Paolo

    2011-01-01

    Context: Systematic literature review (SLR) has become an important research methodology in software engineering since the introduction of evidence-based software engineering (EBSE) in 2004. One critical step in applying this methodology is to design and execute appropriate and effective search....... Objective: The main objective of the research reported in this paper is to improve the search step of undertaking SLRs in software engineering (SE) by devising and evaluating systematic and practical approaches to identifying relevant studies in SE. Method: We have systematically selected and analytically...

  12. EVA: Visual Analytics to Identify Fraudulent Events.

    Science.gov (United States)

    Leite, Roger A; Gschwandtner, Theresia; Miksch, Silvia; Kriglstein, Simone; Pohl, Margit; Gstrein, Erich; Kuntner, Johannes

    2017-08-31

    Financial institutions are interested in ensuring security and quality for their customers. Banks, for instance, need to identify and stop harmful transactions in a timely manner. In order to detect fraudulent operations, data mining techniques and customer profile analysis are commonly used. However, these approaches are not supported by Visual Analytics techniques yet. Visual Analytics techniques have potential to considerably enhance the knowledge discovery process and increase the detection and prediction accuracy of financial fraud detection systems. Thus, we propose EVA, a Visual Analytics approach for supporting fraud investigation, fine-tuning fraud detection algorithms, and thus, reducing false positive alarms.

  13. IDENTIFYING PERFORMANCE ASSURANCE CHALLENGES FOR SMART MANUFACTURING.

    Science.gov (United States)

    Helu, Moneer; Morris, Katherine; Jung, Kiwook; Lyons, Kevin; Leong, Swee

    2015-10-01

    Smart manufacturing has the potential to address many of the challenges faced by industry. However, the manufacturing community often needs assistance to leverage available technologies to improve their systems. To assure the performance of these technologies, this paper proposes a shared knowledge base that collects problem areas, solutions, and best practices for manufacturing technology. An Implementation Risk Assessment Framework (IRAF) is also described to identify the primary weaknesses of technologies in specific manufacturing contexts. Such approaches have the potential to stimulate new ideas and drive standardization activities critical to scale up and deploy smart manufacturing technologies successfully and quickly.

  14. Identifying biomass fuel shortages in Sri Lanka

    Energy Technology Data Exchange (ETDEWEB)

    Howes, Michael (Sussex Univ., Brighton (UK). Inst. of Development Studies)

    1989-01-01

    This paper analyses data from the Sri Lankan Forestry Master Plan and other sources, to explore the causes of biomass shortages, and to identify the areas where interventions are likely to have most impact. Five districts, concentrated in the wet lowland and hill country zones, are found to be in overall biomass fuel deficit whilst in a further five, which include dry zone locations, fuelwood consumption exceeds potential supply, Within the area of overall deficit, poorer urban groups and rural families with no home gardens - who together comprise 15% of all households nationally - are affected most severely. Another 10% of households are likely to suffer to a lesser extent. (author).

  15. Identifying Phase Space Boundaries with Voronoi Tessellations

    CERN Document Server

    Debnath, Dipsikha; Kilic, Can; Kim, Doojin; Matchev, Konstantin T.; Yang, Yuan-Pao

    2016-11-24

    Determining the masses of new physics particles appearing in decay chains is an important and longstanding problem in high energy phenomenology. Recently it has been shown that these mass measurements can be improved by utilizing the boundary of the allowed region in the fully differentiable phase space in its full dimensionality. Here we show that the practical challenge of identifying this boundary can be solved using techniques based on the geometric properties of the cells resulting from Voronoi tessellations of the relevant data. The robust detection of such phase space boundaries in the data could also be used to corroborate a new physics discovery based on a cut-and-count analysis.

  16. Identifying MMORPG Bots: A Traffic Analysis Approach

    Directory of Open Access Journals (Sweden)

    Wen-Chin Chen

    2008-11-01

    Full Text Available Massively multiplayer online role playing games (MMORPGs have become extremely popular among network gamers. Despite their success, one of MMORPG's greatest challenges is the increasing use of game bots, that is, autoplaying game clients. The use of game bots is considered unsportsmanlike and is therefore forbidden. To keep games in order, game police, played by actual human players, often patrol game zones and question suspicious players. This practice, however, is labor-intensive and ineffective. To address this problem, we analyze the traffic generated by human players versus game bots and propose general solutions to identify game bots. Taking Ragnarok Online as our subject, we study the traffic generated by human players and game bots. We find that their traffic is distinguishable by 1 the regularity in the release time of client commands, 2 the trend and magnitude of traffic burstiness in multiple time scales, and 3 the sensitivity to different network conditions. Based on these findings, we propose four strategies and two ensemble schemes to identify bots. Finally, we discuss the robustness of the proposed methods against countermeasures of bot developers, and consider a number of possible ways to manage the increasingly serious bot problem.

  17. Identifying Synonymous Regulatory Elements in Vertebrate Genomes

    Energy Technology Data Exchange (ETDEWEB)

    Ovcharenko, I; Nobrega, M A

    2005-02-07

    Synonymous gene regulation, defined as driving shared temporal and/or spatial expression of groups of genes, is likely predicated on genomic elements that contain similar modules of certain transcription factor binding sites (TFBS). We have developed a method to scan vertebrate genomes for evolutionary conserved modules of TFBS in a predefined configuration, and created a tool, named SynoR that identify synonymous regulatory elements (SREs) in vertebrate genomes. SynoR performs de novo identification of SREs utilizing known patterns of TFBS in active regulatory elements (REs) as seeds for genome scans. Layers of multiple-species conservation allow the use of differential phylogenetic sequence conservation filters in the search of SREs and the results are displayed as to provide an extensive annotation of genes containing detected REs. Gene Ontology categories are utilized to further functionally classify the identified genes, and integrated GNF Expression Atlas 2 data allow the cataloging of tissue-specificities of the predicted SREs. We illustrate how this new tool can be used to establish a linkage between human diseases and noncoding genomic content. SynoR is publicly available at http://synor.dcode.org.

  18. Identifying emotional intelligence in professional nursing practice.

    Science.gov (United States)

    Kooker, Barbara Molina; Shoultz, Jan; Codier, Estelle E

    2007-01-01

    The National Center for Health Workforce Analysis projects that the shortage of registered nurses in the United States will double by 2010 and will nearly quadruple to 20% by 2015 (Bureau of Health Professionals Health Resources and Services Administration. [2002]. Projected supply, demand, and shortages of registered nurses, 2000-2020 [On-line]. Available: http:bhpr.hrsa.gov/healthworkforce/reports/rnprojects/report.htm). The purpose of this study was to use the conceptual framework of emotional intelligence to analyze nurses' stories about their practice to identify factors that could be related to improved nurse retention and patient/client outcomes. The stories reflected evidence of the competencies and domains of emotional intelligence and were related to nurse retention and improved outcomes. Nurses recognized their own strengths and limitations, displayed empathy and recognized client needs, nurtured relationships, used personal influence, and acted as change agents. Nurses were frustrated when organizational barriers conflicted with their knowledge/intuition about nursing practice, their communications were disregarded, or their attempts to create a shared vision and teamwork were ignored. Elements of professional nursing practice, such as autonomy, nurse satisfaction, respect, and the professional practice environment, were identified in the excerpts of the stories. The shortage of practicing nurses continues to be a national issue. The use of emotional intelligence concepts may provide fresh insights into ways to keep nurses engaged in practice and to improve nurse retention and patient/client outcomes.

  19. Identifying Bitcoin users by transaction behavior

    Science.gov (United States)

    Monaco, John V.

    2015-05-01

    Digital currencies, such as Bitcoin, offer convenience and security to criminals operating in the black marketplace. Some Bitcoin marketplaces, such as Silk Road, even claim anonymity. This claim contradicts the findings in this work, where long term transactional behavior is used to identify and verify account holders. Transaction timestamps and network properties observed over time contribute to this finding. The timestamp of each transaction is the result of many factors: the desire purchase an item, daily schedule and activities, as well as hardware and network latency. Dynamic network properties of the transaction, such as coin flow and the number of edge outputs and inputs, contribute further to reveal account identity. In this paper, we propose a novel methodology for identifying and verifying Bitcoin users based on the observation of Bitcoin transactions over time. The behavior we attempt to quantify roughly occurs in the social band of Newell's time scale. A subset of the Blockchain 230686 is taken, selecting users that initiated between 100 and 1000 unique transactions per month for at least 6 different months. This dataset shows evidence of being nonrandom and nonlinear, thus a dynamical systems approach is taken. Classification and authentication accuracies are obtained under various representations of the monthly Bitcoin samples: outgoing transactions, as well as both outgoing and incoming transactions are considered, along with the timing and dynamic network properties of transaction sequences. The most appropriate representations of monthly Bitcoin samples are proposed. Results show an inherent lack of anonymity by exploiting patterns in long-term transactional behavior.

  20. ABCB5 Identifies Immunoregulatory Dermal Cells

    Directory of Open Access Journals (Sweden)

    Tobias Schatton

    2015-09-01

    Full Text Available Cell-based strategies represent a new frontier in the treatment of immune-mediated disorders. However, the paucity of markers for isolation of molecularly defined immunomodulatory cell populations poses a barrier to this field. Here, we show that ATP-binding cassette member B5 (ABCB5 identifies dermal immunoregulatory cells (DIRCs capable of exerting therapeutic immunoregulatory functions through engagement of programmed cell death 1 (PD-1. Purified Abcb5+ DIRCs suppressed T cell proliferation, evaded immune rejection, homed to recipient immune tissues, and induced Tregs in vivo. In fully major-histocompatibility-complex-mismatched cardiac allotransplantation models, allogeneic DIRCs significantly prolonged allograft survival. Blockade of DIRC-expressed PD-1 reversed the inhibitory effects of DIRCs on T cell activation, inhibited DIRC-dependent Treg induction, and attenuated DIRC-induced prolongation of cardiac allograft survival, indicating that DIRC immunoregulatory function is mediated, at least in part, through PD-1. Our results identify ABCB5+ DIRCs as a distinct immunoregulatory cell population and suggest promising roles of this expandable cell subset in cellular immunotherapy.

  1. Regional Seismic Methods of Identifying Explosions

    Science.gov (United States)

    Walter, W. R.; Ford, S. R.; Pasyanos, M.; Pyle, M. L.; Hauk, T. F.

    2013-12-01

    A lesson from the 2006, 2009 and 2013 DPRK declared nuclear explosion Ms:mb observations is that our historic collection of data may not be representative of future nuclear test signatures (e.g. Selby et al., 2012). To have confidence in identifying future explosions amongst the background of other seismic signals, we need to put our empirical methods on a firmer physical footing. Here we review the two of the main identification methods: 1) P/S ratios and 2) Moment Tensor techniques, which can be applied at the regional distance (200-1600 km) to very small events, improving nuclear explosion monitoring and confidence in verifying compliance with the Comprehensive Nuclear-Test-Ban Treaty (CTBT). Amplitude ratios of seismic P-to-S waves at sufficiently high frequencies (~>2 Hz) can identify explosions among a background of natural earthquakes (e.g. Walter et al., 1995). However the physical basis for the generation of explosion S-waves, and therefore the predictability of this P/S technique as a function of event properties such as size, depth, geology and path, remains incompletely understood. Calculated intermediate period (10-100s) waveforms from regional 1-D models can match data and provide moment tensor results that separate explosions from earthquakes and cavity collapses (e.g. Ford et al. 2009). However it has long been observed that some nuclear tests produce large Love waves and reversed Rayleigh waves that complicate moment tensor modeling. Again the physical basis for the generation of these effects from explosions remains incompletely understood. We are re-examining regional seismic data from a variety of nuclear test sites including the DPRK and the former Nevada Test Site (now the Nevada National Security Site (NNSS)). Newer relative amplitude techniques can be employed to better quantify differences between explosions and used to understand those differences in term of depth, media and other properties. We are also making use of the Source Physics

  2. Identifying the immunomodulatory components of helminths.

    Science.gov (United States)

    Shepherd, C; Navarro, S; Wangchuk, P; Wilson, D; Daly, N L; Loukas, A

    2015-06-01

    Immunomodulatory components of helminths offer great promise as an entirely new class of biologics for the treatment of inflammatory diseases. Here, we discuss the emerging themes in helminth-driven immunomodulation in the context of therapeutic drug discovery. We broadly define the approaches that are currently applied by researchers to identify these helminth molecules, highlighting key areas of potential exploitation that have been mostly neglected thus far, notably small molecules. Finally, we propose that the investigation of immunomodulatory compounds will enable the translation of current and future research efforts into potential treatments for autoimmune and allergic diseases, while at the same time yielding new insights into the molecular interface of host-parasite biology. © 2015 John Wiley & Sons Ltd.

  3. Identifying the structural discontinuities of human interactions

    CERN Document Server

    Grauwin, Sebastian; Sobolevsky, Stanislav; Hövel, Philipp; Simini, Filippo; Vanhoof, Maarten; Smoreda, Zbigniew; Barabasi, Albert-Laszlo; Ratti, Carlo

    2015-01-01

    The idea of a hierarchical spatial organization of society lies at the core of seminal theories in human geography that have strongly influenced our understanding of social organization. In the same line, the recent availability of large-scale human mobility and communication data has offered novel quantitative insights hinting at a strong geographical confinement of human interactions within neighboring regions, extending to local levels within countries. However, models of human interaction largely ignore this effect. Here, we analyze several country-wide networks of telephone calls and uncover a systematic decrease of communication induced by borders which we identify as the missing variable in state-of-the-art models. Using this empirical evidence, we propose an alternative modeling framework that naturally stylize the damping effect of borders. We show that this new notion substantially improves the predictive power of widely used interaction models, thus increasing our ability to predict social activiti...

  4. Identifying modular relations in complex brain networks

    DEFF Research Database (Denmark)

    Andersen, Kasper Winther; Mørup, Morten; Siebner, Hartwig

    2012-01-01

    and obtains comparable reproducibility and predictability. For resting state functional magnetic resonance imaging data from 30 healthy controls the IRM model is also superior to the two simpler alternatives, suggesting that brain networks indeed exhibit universal complex relational structure......We evaluate the infinite relational model (IRM) against two simpler alternative nonparametric Bayesian models for identifying structures in multi subject brain networks. The models are evaluated for their ability to predict new data and infer reproducible structures. Prediction and reproducibility...... are measured within the data driven NPAIRS split-half framework. Using synthetic data drawn from each of the generative models we show that the IRM model outperforms the two competing models when data contain relational structure. For data drawn from the other two simpler models the IRM does not overfit...

  5. Identifying states of a financial market.

    Science.gov (United States)

    Münnix, Michael C; Shimada, Takashi; Schäfer, Rudi; Leyvraz, Francois; Seligman, Thomas H; Guhr, Thomas; Stanley, H Eugene

    2012-01-01

    The understanding of complex systems has become a central issue because such systems exist in a wide range of scientific disciplines. We here focus on financial markets as an example of a complex system. In particular we analyze financial data from the S&P 500 stocks in the 19-year period 1992-2010. We propose a definition of state for a financial market and use it to identify points of drastic change in the correlation structure. These points are mapped to occurrences of financial crises. We find that a wide variety of characteristic correlation structure patterns exist in the observation time window, and that these characteristic correlation structure patterns can be classified into several typical "market states". Using this classification we recognize transitions between different market states. A similarity measure we develop thus affords means of understanding changes in states and of recognizing developments not previously seen.

  6. Identifying Health-Related Topics on Twitter

    Science.gov (United States)

    Prier, Kyle W.; Smith, Matthew S.; Giraud-Carrier, Christophe; Hanson, Carl L.

    Public health-related topics are difficult to identify in large conversational datasets like Twitter. This study examines how to model and discover public health topics and themes in tweets. Tobacco use is chosen as a test case to demonstrate the effectiveness of topic modeling via LDA across a large, representational dataset from the United States, as well as across a smaller subset that was seeded by tobacco-related queries. Topic modeling across the large dataset uncovers several public health-related topics, although tobacco is not detected by this method. However, topic modeling across the tobacco subset provides valuable insight about tobacco use in the United States. The methods used in this paper provide a possible toolset for public health researchers and practitioners to better understand public health problems through large datasets of conversational data.

  7. Identifying links between origami and compliant mechanisms

    Directory of Open Access Journals (Sweden)

    H. C. Greenberg

    2011-12-01

    Full Text Available Origami is the art of folding paper. In the context of engineering, orimimetics is the application of folding to solve problems. Kinetic origami behavior can be modeled with the pseudo-rigid-body model since the origami are compliant mechanisms. These compliant mechanisms, when having a flat initial state and motion emerging out of the fabrication plane, are classified as lamina emergent mechanisms (LEMs. To demonstrate the feasibility of identifying links between origami and compliant mechanism analysis and design methods, four flat folding paper mechanisms are presented with their corresponding kinematic and graph models. Principles from graph theory are used to abstract the mechanisms to show them as coupled, or inter-connected, mechanisms. It is anticipated that this work lays a foundation for exploring methods for LEM synthesis based on the analogy between flat-folding origami models and linkage assembly.

  8. Identifying and misidentifying the brown recluse spider.

    Science.gov (United States)

    Vetter, R

    1999-11-01

    The brown recluse spider, Loxosceles reclusa, is often implicated as a cause of necrotic skin lesions.[1-3] Diagnoses are most commonly made by clinical appearance and infrequently is a spider seen, captured or identified at the time of the bite.[1, 2, 4-6] The brown recluse lives in a circumscribed area of the U.S. (the south central Midwest) with a few less common recluse species living in the more sparsely-populated southwest U.S.[7] In these areas, where spider populations may be dense, recluse spiders may be a cause of significant morbidity. However, outside the natural range of these recluse species, the conviction that they are the etiological agents behind necrotic lesions of unknown origin is widespread, and most often erroneous. In some states such as California, unsubstantiated reports concerning recluse spider bites have taken on the status of "urban legend" leading to overdiagnosis and, therefore, inappropriate treatment.

  9. Machine learning for identifying botnet network traffic

    DEFF Research Database (Denmark)

    Stevanovic, Matija; Pedersen, Jens Myrup

    2013-01-01

    . Due to promise of non-invasive and resilient detection, botnet detection based on network traffic analysis has drawn a special attention of the research community. Furthermore, many authors have turned their attention to the use of machine learning algorithms as the mean of inferring botnet......-related knowledge from the monitored traffic. This paper presents a review of contemporary botnet detection methods that use machine learning as a tool of identifying botnet-related traffic. The main goal of the paper is to provide a comprehensive overview on the field by summarizing current scientific efforts....... The contribution of the paper is three-fold. First, the paper provides a detailed insight on the existing detection methods by investigating which bot-related heuristic were assumed by the detection systems and how different machine learning techniques were adapted in order to capture botnet-related knowledge...

  10. Brief report: Identifying defenders of peer victimization.

    Science.gov (United States)

    Meter, Diana J; Card, Noel A

    2016-06-01

    Betweenness centrality quantifies the amount of network flow that a network member controls as hypothetical traffic passes between network members. Those with high betweenness centrality within the peer social network based on nominations of liking may be especially important connectors between individuals who do not like each other. This study tested the hypothesis that individuals' betweenness centrality would predict their defending of victimized peers. After controlling for popularity, perception of being liked, and defenders' victimization, betweenness centrality predicted defending. Those found to be connectors within the peer group were more likely to be those who defend peer victims. This investigation showed that analysis of betweenness centrality is a viable way to identify potential defenders in research and also those who could potentially act as mediators. Copyright © 2016 The Foundation for Professionals in Services for Adolescents. Published by Elsevier Ltd. All rights reserved.

  11. Identifying driver mutations in sequenced cancer genomes

    DEFF Research Database (Denmark)

    Raphael, Benjamin J; Dobson, Jason R; Oesper, Layla

    2014-01-01

    High-throughput DNA sequencing is revolutionizing the study of cancer and enabling the measurement of the somatic mutations that drive cancer development. However, the resulting sequencing datasets are large and complex, obscuring the clinically important mutations in a background of errors, noise......, and random mutations. Here, we review computational approaches to identify somatic mutations in cancer genome sequences and to distinguish the driver mutations that are responsible for cancer from random, passenger mutations. First, we describe approaches to detect somatic mutations from high-throughput DNA...... sequencing data, particularly for tumor samples that comprise heterogeneous populations of cells. Next, we review computational approaches that aim to predict driver mutations according to their frequency of occurrence in a cohort of samples, or according to their predicted functional impact on protein...

  12. BENCHMARKING - PRACTICAL TOOLS IDENTIFY KEY SUCCESS FACTORS

    Directory of Open Access Journals (Sweden)

    Olga Ju. Malinina

    2016-01-01

    Full Text Available The article gives a practical example of the application of benchmarking techniques. The object of study selected fashion store Company «HLB & M Hennes & Mauritz», located in the shopping center «Gallery», Krasnodar. Hennes & Mauritz. The purpose of this article is to identify the best ways to develop a fashionable brand clothing store Hennes & Mauritz on the basis of benchmarking techniques. On the basis of conducted market research is a comparative analysis of the data from different perspectives. The result of the author’s study is a generalization of the ndings, the development of the key success factors that will allow to plan a successful trading activities in the future, based on the best experience of competitors.

  13. Identifying Reaction Pathways and their Environments

    DEFF Research Database (Denmark)

    Maronsson, Jon Bergmann

    . Information about the ridge can be used to test the validity of the harmonic approximation to transition state theory for reaction rates, in particular to verify that second order saddle points - maxima along the ridge - are high enough compared to the first order saddle points. Furthermore, corrections......Finding the mechanisms and estimating the rate of chemical reactions is an essential part of modern research of atomic scale systems. In this thesis, the application of well established methods for reaction rates and paths to important systems for hydrogen storage is considered before developing...... extensions to further identify the reaction environment for a more accurate rate. Complex borohydrides are materials of high hydrogen storage capacity and high thermodynamic stability (too high for hydrogen storage). In an effort to gain insight into the structural transitions of two such materials, Ca(BH4...

  14. Identifying asteroid families >2 Gyrs-old

    Science.gov (United States)

    Bolin, Bryce T.; Morbidelli, Alessandro; Delbo, Marco; Walsh, Kevin J.

    2017-10-01

    There are only a few known Main Belt (MB) asteroid families with ages >2 Gyr. The lack of ancient families may be due to a bias in current techniques used to identify families. Ancient asteroid family fragments disperse in their orbital elements (a,e,i), due to secular resonances and the Yarkovsky effect (YE) making them difficult to identify. We have developed a new technique that is insensitive to the resonant spreading of fragments in e and i by searching for V-shaped correlations between family members in a vs 1/Diameter space. Our V-shape technique is demonstrated on known families and used to discover a 4 Gyr-old family linking most dark asteroids in the inner MB previously not included in any known family. In addition, the 4 Gyr-old family reveals asteroids with D >35 km that are do not belong to any asteroid family implying that they originally accreted from the protoplanetary disk.The V-shape detection tool is also a powerful analysis tool by finding the boundary of an asteroid family and fitting for its shape. Following the proposed relationship between thermal inertia (TI) with D, we find that asteroids YE drift rate might have a more complex size dependence than previous thought, leading to a curved family boundary in a vs 1/D space. The V-shape tool is capable of detecting this on synthetic families and was deployed on >30 families located throughout the MB to find this effect and quantify the YE size-dependent drift rate. We find that there is no correlation between family age and V-shape curvature. In addition, the V-shape curvature decreases for asteroid families with larger a suggesting that the relationship between TI and D is weaker in the outer MB.By examining families asteroid families have initial velocity fields scaling with 1/D supporting impact experiments.

  15. Identifying sites for elk restoration in Arkansas

    Science.gov (United States)

    Telesco, R.L.; Van Manen, F.T.; Clark, J.D.; Cartwright, Michael E.

    2007-01-01

    We used spatial data to identify potential areas for elk (Cervus elaphus) restoration in Arkansas. To assess habitat, we used locations of 239 elk groups collected from helicopter surveys in the Buffalo National River area of northwestern Arkansas, USA, from 1992 to 2002. We calculated the Mahalanobis distance (D2) statistic based on the relationship between those elk-group locations and a suite of 9 landscape variables to evaluate winter habitat in Arkansas. We tested model performance in the Buffalo National River area by comparing the D2 values of pixels representing areas with and without elk pellets along 19 fixed-width transects surveyed in March 2002. Pixels with elk scat had lower D2 values than pixels in which we found no pellets (logistic regression: Wald χ2 = 24.37, P conflicts in Arkansas, we used the analytical hierarchy process to rank the importance of 8 criteria based on expert opinion from biologists involved in elk management. The biologists ranked availability of forage on public lands as having the strongest influence on the potential for elk–human conflict (33%), followed by human population growth rate (22%) and the amount of private land in row crops (18%). We then applied those rankings in a weighted linear summation to map the relative potential for elk–human conflict. Finally, we used white-tailed deer (Odocoileus virginianus) densities to identify areas where success of elk restoration may be hampered due to meningeal worm (Parelaphostrongylus tenuis) transmission. By combining results of the 3 spatial data layers (i.e., habitat model, elk–human conflict model, deer density), our model indicated that restoration sites located in west-central and north-central Arkansas were most favorable for reintroduction.

  16. DNA Barcoding Identifies Illegal Parrot Trade.

    Science.gov (United States)

    Gonçalves, Priscila F M; Oliveira-Marques, Adriana R; Matsumoto, Tania E; Miyaki, Cristina Y

    2015-01-01

    Illegal trade threatens the survival of many wild species, and molecular forensics can shed light on various questions raised during the investigation of cases of illegal trade. Among these questions is the identity of the species involved. Here we report a case of a man who was caught in a Brazilian airport trying to travel with 58 avian eggs. He claimed they were quail eggs, but authorities suspected they were from parrots. The embryos never hatched and it was not possible to identify them based on morphology. As 29% of parrot species are endangered, the identity of the species involved was important to establish a stronger criminal case. Thus, we identified the embryos' species based on the analyses of mitochondrial DNA sequences (cytochrome c oxidase subunit I gene [COI] and 16S ribosomal DNA). Embryonic COI sequences were compared with those deposited in BOLD (The Barcode of Life Data System) while their 16S sequences were compared with GenBank sequences. Clustering analysis based on neighbor-joining was also performed using parrot COI and 16S sequences deposited in BOLD and GenBank. The results, based on both genes, indicated that 57 embryos were parrots (Alipiopsitta xanthops, Ara ararauna, and the [Amazona aestiva/A. ochrocephala] complex), and 1 was an owl. This kind of data can help criminal investigations and to design species-specific anti-poaching strategies, and demonstrate how DNA sequence analysis in the identification of bird species is a powerful conservation tool. © The American Genetic Association 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  17. Vulnerability of critical infrastructures : identifying critical nodes.

    Energy Technology Data Exchange (ETDEWEB)

    Cox, Roger Gary; Robinson, David Gerald

    2004-06-01

    The objective of this research was the development of tools and techniques for the identification of critical nodes within critical infrastructures. These are nodes that, if disrupted through natural events or terrorist action, would cause the most widespread, immediate damage. This research focuses on one particular element of the national infrastructure: the bulk power system. Through the identification of critical elements and the quantification of the consequences of their failure, site-specific vulnerability analyses can be focused at those locations where additional security measures could be effectively implemented. In particular, with appropriate sizing and placement within the grid, distributed generation in the form of regional power parks may reduce or even prevent the impact of widespread network power outages. Even without additional security measures, increased awareness of sensitive power grid locations can provide a basis for more effective national, state and local emergency planning. A number of methods for identifying critical nodes were investigated: small-world (or network theory), polyhedral dynamics, and an artificial intelligence-based search method - particle swarm optimization. PSO was found to be the only viable approach and was applied to a variety of industry accepted test networks to validate the ability of the approach to identify sets of critical nodes. The approach was coded in a software package called Buzzard and integrated with a traditional power flow code. A number of industry accepted test networks were employed to validate the approach. The techniques (and software) are not unique to power grid network, but could be applied to a variety of complex, interacting infrastructures.

  18. Identifying functional decline: a methodological challenge

    Directory of Open Access Journals (Sweden)

    Grimmer K

    2013-08-01

    Full Text Available Karen Grimmer, Kate Beaton, Kevan Hendry International Centre for Allied Health Evidence, University of South Australia, Adelaide, SA, Australia Background: Functional decline (FD in older people has commonly been measured in the hospital setting with instruments which have been validated on decrease over time in capacity to undertake basic activities of daily living (ADL. In a nonhospitalized sample of older people (independently community dwelling, but potentially on the cusp of FD, it is possible that other measures could be used to predict decline. Early, accurate, and efficient identification of older community-dwelling people who are on the cusp of FD can assist in identifying appropriate interventions to slow the rate of decline. Methods: This paper reports on associations between four outcome measures which have been associated with FD (instrumental ADLs [IADLs], quality of life, hospitalizations and falls. The sample was older individuals who were discharged from one large metropolitan emergency department (ED during 2011–2012, without an inpatient admission. Results: Of 597 individuals aged 65+ who provided baseline information, 148 subjects provided four outcome measures at both 1 and 3 months follow up. Overall, approximately 24% demonstrated decreased IADL scores over the 3 months, with domains of home activities, laundry, shopping, and getting places declining the most. Over this time, 18% fell often, and 11% were consistently hospitalized. Between 1 and 3 months follow up, 41% declined in mental component scores, and 50% declined in physical component scores. Low mental and physical component quality of life scores were associated with downstream increased falls and hospitalizations, and decreased quality of life and IADLs. However, change in the four outcome measures was largely independent in factor analysis. Conclusion: Measuring the four outcome measures over 3 months post-discharge from an ED presentation, showed that

  19. Identifying Coevolving Partners from Paralogous Gene Families

    Directory of Open Access Journals (Sweden)

    Chen-Hsiang Yeang

    2008-01-01

    Full Text Available Many methods have been developed to detect coevolution from aligned sequences. However, all the existing methods require a one-to-one mapping of candidate coevolving partners (nucleotides, amino acids a priori. When two families of sequences have distinct duplication and loss histories, finding the one-to-one mapping of coevolving partners can be computationally involved. We propose an algorithm to identify the coevolving partners from two families of sequences with distinct phylogenetic trees. The algorithm maps each gene tree to a reference species tree, and builds a joint state of sequence composition and assignments of coevolving partners for each species tree node. By applying dynamic programming on the joint states, the optimal assignments can be identified. Time complexity is quadratic to the size of the species tree, and space complexity is exponential to the maximum number of gene tree nodes mapped to the same species tree node. Analysis on both simulated data and Pfam protein domain sequences demonstrates that the paralog coevolution algorithm picks up the coevolving partners with 60%–88% accuracy. This algorithm extends phylogeny-based coevolutionary models and make them applicable to a wide range of problems such as predicting protein-protein, protein-DNA and DNA-RNA interactions of two distinct families of sequences.

  20. Identifying Middlewares for Mashup Personal Learning Environments

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    Jinan Fiaidhi

    2009-08-01

    Full Text Available The common understanding of e-learning has shifted over the last decade from the traditional learning objects portals to learning paradigms that enforces constructivism, discovery learning and social collaboration. Such type of learning takes place outside the formal academic settings (e.g., seminars or lectures where a learning environment is created by using some kind of web application mashup tools. The use of these mashup tools moves the learning environment further away from being a monolithic platform towards providing an open set of learning tools, an unrestricted number of actors, and an open corpus of artifacts, either pre-existing or created by the learning process – freely combinable and utilizable by learners within their learning activities. However, collaboration, mashup and contextualization can only be supported through services, which can be created and modified dynamically based on middlewares to suit the current needs and situations of learners. This article identifies middlewares suitable for creating effective personal learning environment based on Web 2.0 mashup tools. This article also proposed a general framework for constructing such personal learning environments based on Ambient Learning realized by learning agents and the use of Enterprise Mashup servers.

  1. Identifying Cognitive States Using Regularity Partitions.

    Science.gov (United States)

    Pappas, Ioannis; Pardalos, Panos

    2015-01-01

    Functional Magnetic Resonance (fMRI) data can be used to depict functional connectivity of the brain. Standard techniques have been developed to construct brain networks from this data; typically nodes are considered as voxels or sets of voxels with weighted edges between them representing measures of correlation. Identifying cognitive states based on fMRI data is connected with recording voxel activity over a certain time interval. Using this information, network and machine learning techniques can be applied to discriminate the cognitive states of the subjects by exploring different features of data. In this work we wish to describe and understand the organization of brain connectivity networks under cognitive tasks. In particular, we use a regularity partitioning algorithm that finds clusters of vertices such that they all behave with each other almost like random bipartite graphs. Based on the random approximation of the graph, we calculate a lower bound on the number of triangles as well as the expectation of the distribution of the edges in each subject and state. We investigate the results by comparing them to the state of the art algorithms for exploring connectivity and we argue that during epochs that the subject is exposed to stimulus, the inspected part of the brain is organized in an efficient way that enables enhanced functionality.

  2. Identifying Cognitive States Using Regularity Partitions.

    Directory of Open Access Journals (Sweden)

    Ioannis Pappas

    Full Text Available Functional Magnetic Resonance (fMRI data can be used to depict functional connectivity of the brain. Standard techniques have been developed to construct brain networks from this data; typically nodes are considered as voxels or sets of voxels with weighted edges between them representing measures of correlation. Identifying cognitive states based on fMRI data is connected with recording voxel activity over a certain time interval. Using this information, network and machine learning techniques can be applied to discriminate the cognitive states of the subjects by exploring different features of data. In this work we wish to describe and understand the organization of brain connectivity networks under cognitive tasks. In particular, we use a regularity partitioning algorithm that finds clusters of vertices such that they all behave with each other almost like random bipartite graphs. Based on the random approximation of the graph, we calculate a lower bound on the number of triangles as well as the expectation of the distribution of the edges in each subject and state. We investigate the results by comparing them to the state of the art algorithms for exploring connectivity and we argue that during epochs that the subject is exposed to stimulus, the inspected part of the brain is organized in an efficient way that enables enhanced functionality.

  3. Nocturnal Sleep Dynamics Identify Narcolepsy Type 1.

    Science.gov (United States)

    Pizza, Fabio; Vandi, Stefano; Iloti, Martina; Franceschini, Christian; Liguori, Rocco; Mignot, Emmanuel; Plazzi, Giuseppe

    2015-08-01

    To evaluate the reliability of nocturnal sleep dynamics in the differential diagnosis of central disorders of hypersomnolence. Cross-sectional. Sleep laboratory. One hundred seventy-five patients with hypocretin-deficient narcolepsy type 1 (NT1, n = 79), narcolepsy type 2 (NT2, n = 22), idiopathic hypersomnia (IH, n = 22), and "subjective" hypersomnolence (sHS, n = 52). None. Polysomnographic (PSG) work-up included 48 h of continuous PSG recording. From nocturnal PSG conventional sleep macrostructure, occurrence of sleep onset rapid eye movement period (SOREMP), sleep stages distribution, and sleep stage transitions were calculated. Patient groups were compared, and receiver operating characteristic (ROC) curve analysis was used to test the diagnostic utility of nocturnal PSG data to identify NT1. Sleep macrostructure was substantially stable in the 2 nights of each diagnostic group. NT1 and NT2 patients had lower latency to rapid eye movement (REM) sleep, and NT1 patients showed the highest number of awakenings, sleep stage transitions, and more time spent in N1 sleep, as well as most SOREMPs at daytime PSG and at multiple sleep latency test (MSLT) than all other groups. ROC curve analysis showed that nocturnal SOREMP (area under the curve of 0.724 ± 0.041, P narcolepsy type 1 among central disorders of hypersomnolence. © 2015 Associated Professional Sleep Societies, LLC.

  4. Identifying murder victims with endodontic radiographs

    Science.gov (United States)

    Silva, Rhonan Ferreira; Franco, Ademir; Mendes, Solon Diego Santos Carvalho; Picoli, Fernando Fortes; Nunes, Fernando Gomes; Estrela, Carlos

    2016-01-01

    Endodontics is a special branch of dentistry constantly guided by imaging examinations. From a forensic scope, endodontics plays a valuable role providing solid antemortem (AM) radiographic evidence for comparison with postmortem findings in human identifications. This study illustrates the interface between endodontics and forensic odontology describing three cases of human identification based on radiographic endodontic records. From 2009 to 2012, three unknown male victims of murder were examined in a local Brazilian medico-legal institute to retrieve identity and potential cause of death. Specifically, when asked for AM data, a relative of the three victims provided periapical radiographs of endodontic treatments. Based on that, forensic dentists reproduced the same imaging acquisition techniques obtaining similar periapical radiographs, enabling a comparative dental identification. All the victims were positively identified based on patterns of dental morphology and treatment intervention. This study draws the attention of general and forensic dentists highlight the importance of properly recording dental treatments and searching for evidence in AM endodontic data, respectively. PMID:28123272

  5. Indexing molecules with chemical graph identifiers.

    Science.gov (United States)

    Gregori-Puigjané, Elisabet; Garriga-Sust, Rut; Mestres, Jordi

    2011-09-01

    Fast and robust algorithms for indexing molecules have been historically considered strategic tools for the management and storage of large chemical libraries. This work introduces a modified and further extended version of the molecular equivalence number naming adaptation of the Morgan algorithm (J Chem Inf Comput Sci 2001, 41, 181-185) for the generation of a chemical graph identifier (CGI). This new version corrects for the collisions recognized in the original adaptation and includes the ability to deal with graph canonicalization, ensembles (salts), and isomerism (tautomerism, regioisomerism, optical isomerism, and geometrical isomerism) in a flexible manner. Validation of the current CGI implementation was performed on the open NCI database and the drug-like subset of the ZINC database containing 260,071 and 5,348,089 structures, respectively. The results were compared with those obtained with some of the most widely used indexing codes, such as the CACTVS hash code and the new InChIKey. The analyses emphasize the fact that compound management activities, like duplicate analysis of chemical libraries, are sensitive to the exact definition of compound uniqueness and thus still depend, to a minor extent, on the type and flexibility of the molecular index being used. Copyright © 2011 Wiley Periodicals, Inc.

  6. Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes

    Science.gov (United States)

    Edmunds, Richard C.; Su, Baofeng; Balhoff, James P.; Eames, B. Frank; Dahdul, Wasila M.; Lapp, Hilmar; Lundberg, John G.; Vision, Todd J.; Dunham, Rex A.; Mabee, Paula M.; Westerfield, Monte

    2016-01-01

    Phenotypes resulting from mutations in genetic model organisms can help reveal candidate genes for evolutionarily important phenotypic changes in related taxa. Although testing candidate gene hypotheses experimentally in nonmodel organisms is typically difficult, ontology-driven information systems can help generate testable hypotheses about developmental processes in experimentally tractable organisms. Here, we tested candidate gene hypotheses suggested by expert use of the Phenoscape Knowledgebase, specifically looking for genes that are candidates responsible for evolutionarily interesting phenotypes in the ostariophysan fishes that bear resemblance to mutant phenotypes in zebrafish. For this, we searched ZFIN for genetic perturbations that result in either loss of basihyal element or loss of scales phenotypes, because these are the ancestral phenotypes observed in catfishes (Siluriformes). We tested the identified candidate genes by examining their endogenous expression patterns in the channel catfish, Ictalurus punctatus. The experimental results were consistent with the hypotheses that these features evolved through disruption in developmental pathways at, or upstream of, brpf1 and eda/edar for the ancestral losses of basihyal element and scales, respectively. These results demonstrate that ontological annotations of the phenotypic effects of genetic alterations in model organisms, when aggregated within a knowledgebase, can be used effectively to generate testable, and useful, hypotheses about evolutionary changes in morphology. PMID:26500251

  7. Identifying a new particle with jet substructures

    Science.gov (United States)

    Han, Chengcheng; Kim, Doojin; Kim, Minho; Kong, Kyoungchul; Lim, Sung Hak; Park, Myeonghun

    2017-01-01

    We investigate a potential of determining properties of a new heavy resonance of mass O(1) TeV which decays to collimated jets via heavy Standard Model intermediary states, exploiting jet substructure techniques. Employing the Z gauge boson as a concrete example for the intermediary state, we utilize a "merged jet" defined by a large jet size to capture the two quarks from its decay. The use of the merged jet benefits the identification of a Z-induced jet as a single, reconstructed object without any combinatorial ambiguity. We find that jet substructure procedures may enhance features in some kinematic observables formed with subjet four-momenta extracted from a merged jet. This observation motivates us to feed subjet momenta into the matrix elements associated with plausible hypotheses on the nature of the heavy resonance, which are further processed to construct a matrix element method (MEM)-based observable. For both moderately and highly boosted Z bosons, we demonstrate that the MEM in combination with jet substructure techniques can be a very powerful tool for identifying its physical properties. We also discuss effects from choosing different jet sizes for merged jets and jet-grooming parameters upon the MEM analyses.

  8. Identifying Memory Allocation Patterns in HEP Software

    Science.gov (United States)

    Kama, S.; Rauschmayr, N.

    2017-10-01

    HEP applications perform an excessive amount of allocations/deallocations within short time intervals which results in memory churn, poor locality and performance degradation. These issues are already known for a decade, but due to the complexity of software frameworks and billions of allocations for a single job, up until recently no efficient mechanism has been available to correlate these issues with source code lines. However, with the advent of the Big Data era, many tools and platforms are now available to do large scale memory profiling. This paper presents, a prototype program developed to track and identify each single (de-)allocation. The CERN IT Hadoop cluster is used to compute memory key metrics, like locality, variation, lifetime and density of allocations. The prototype further provides a web based visualization back-end that allows the user to explore the results generated on the Hadoop cluster. Plotting these metrics for every single allocation over time gives a new insight into application’s memory handling. For instance, it shows which algorithms cause which kind of memory allocation patterns, which function flow causes how many short-lived objects, what are the most commonly allocated sizes etc. The paper will give an insight into the prototype and will show profiling examples for the LHC reconstruction, digitization and simulation jobs.

  9. Identifying lubricant options for compressor bearing designs

    Science.gov (United States)

    Karnaz, J.; Seeton, C.; Dixon, L.

    2017-08-01

    Today’s refrigeration and air conditioning market is not only driven by the environmental aspects of the refrigerants, but also by the energy efficiency and reliability of system operation. Numerous types of compressor designs are used in refrigeration and air conditioning applications which means that different bearings are used; and in some cases, multiple bearing types within a single compressor. Since only one lubricant is used, it is important to try to optimize the lubricant to meet the various demands and requirements for operation. This optimization entails investigating different types of lubricant chemistries, viscosities, and various formulation options. What makes evaluating these options more challenging is the refrigerant which changes the properties of the lubricant delivered to the bearing. Once the lubricant and refrigerant interaction are understood, through various test methods, then work can start on collaborating with compressor engineers on identifying the lubricant chemistry and formulation options. These interaction properties are important to the design engineer to make decisions on the adequacy of the lubricant before compressor tests are started. This paper will discuss the process to evaluate lubricants for various types of compressors and bearing design with focus on what’s needed for current refrigerant trends. In addition, the paper will show how the lubricant chemistry choice can be manipulated through understanding of the bearing design and knowledge of interaction with the refrigerant to maximize performance. Emphasis will be placed on evaluation of synthetic lubricants for both natural and synthetic low GWP refrigerants.

  10. Identifying core competencies for public health epidemiologists.

    Science.gov (United States)

    Bondy, Susan J; Johnson, Ian; Cole, Donald C; Bercovitz, Kim

    2008-01-01

    Public health authorities have prioritized the identification of competencies, yet little empirical data exist to support decisions on competency selection among particular disciplines. We sought perspectives on important competencies among epidemiologists familiar with or practicing in public health settings (local to national). Using a sequential, qualitative-quantitative mixed method design, we conducted key informant interviews with 12 public health practitioners familiar with front-line epidemiologists' practice, followed by a web-based survey of members of a provincial association of public health epidemiologists (90 respondents of 155 eligible) and a consensus workshop. Competency statements were drawn from existing core competency lists and those identified by key informants, and ranked by extent of agreement in importance for entry-level practitioners. Competencies in quantitative methods and analysis, critical appraisal of scientific evidence and knowledge transfer of scientific data to other members of the public health team were all regarded as very important for public health epidemiologists. Epidemiologist competencies focused on the provision, interpretation and 'translation' of evidence to inform decision-making by other public health professionals. Considerable tension existed around some potential competency items, particularly in the areas of more advanced database and data-analytic skills. Empirical data can inform discussions of discipline-specific competencies as one input to decisions about competencies appropriate for epidemiologists in the public health workforce.

  11. Identifying challenges in project consultants engagement practices

    Science.gov (United States)

    Shariffuddin, Nadia Alina Amir; Abidin, Nazirah Zainul

    2017-10-01

    Construction projects, green or conventional, involve multi-faceted disciplines engaged with the goal of delivering products i.e. building, infrastructure etc. at the best quality within stipulated budgets. For green projects, additional attention is added for environmental quality. Due to the various responsibilities and liabilities involved as well as the complexity of the construction process itself, formal engagement of multi-disciplinary professionals i.e. project consultants is required in any construction project. Poor selection of project consultants will lead to a multitude of complications resulting in delay, cost escalation, conflicts and poor quality. This paper explores the challenges that occur during the engagement of project consultants in a green project. As the engagement decision involves developers and architects, these two groups of respondents with green project backgrounds were approached qualitatively using interview technique. The challenges identified are limited experience and knowledge, consultants' fee vs. quality, green complexity, conflicts of interest, clients' extended expectation and less demand in green projects. The construction shifts to green project demands engagement of project consultants with added skills. It is expected that through the identification of challenges, better management and administration can be created which would give impact to the overall process of engagement in green projects.

  12. An ensemble framework for identifying essential proteins.

    Science.gov (United States)

    Zhang, Xue; Xiao, Wangxin; Acencio, Marcio Luis; Lemke, Ney; Wang, Xujing

    2016-08-25

    Many centrality measures have been proposed to mine and characterize the correlations between network topological properties and protein essentiality. However, most of them show limited prediction accuracy, and the number of common predicted essential proteins by different methods is very small. In this paper, an ensemble framework is proposed which integrates gene expression data and protein-protein interaction networks (PINs). It aims to improve the prediction accuracy of basic centrality measures. The idea behind this ensemble framework is that different protein-protein interactions (PPIs) may show different contributions to protein essentiality. Five standard centrality measures (degree centrality, betweenness centrality, closeness centrality, eigenvector centrality, and subgraph centrality) are integrated into the ensemble framework respectively. We evaluated the performance of the proposed ensemble framework using yeast PINs and gene expression data. The results show that it can considerably improve the prediction accuracy of the five centrality measures individually. It can also remarkably increase the number of common predicted essential proteins among those predicted by each centrality measure individually and enable each centrality measure to find more low-degree essential proteins. This paper demonstrates that it is valuable to differentiate the contributions of different PPIs for identifying essential proteins based on network topological characteristics. The proposed ensemble framework is a successful paradigm to this end.

  13. Identifying User Profiles from Statistical Grouping Methods

    Directory of Open Access Journals (Sweden)

    Francisco Kelsen de Oliveira

    2018-02-01

    Full Text Available This research aimed to group users into subgroups according to their levels of knowledge about technology. Statistical hierarchical and non-hierarchical clustering methods were studied, compared and used in the creations of the subgroups from the similarities of the skill levels with these users’ technology. The research sample consisted of teachers who answered online questionnaires about their skills with the use of software and hardware with educational bias. The statistical methods of grouping were performed and showed the possibilities of groupings of the users. The analyses of these groups allowed to identify the common characteristics among the individuals of each subgroup. Therefore, it was possible to define two subgroups of users, one with skill in technology and another with skill with technology, so that the partial results of the research showed two main algorithms for grouping with 92% similarity in the formation of groups of users with skill with technology and the other with little skill, confirming the accuracy of the techniques of discrimination against individuals.

  14. Identifying and quantifying urban recharge: a review

    Science.gov (United States)

    Lerner, David N.

    2002-02-01

    The sources of and pathways for groundwater recharge in urban areas are more numerous and complex than in rural environments. Buildings, roads, and other surface infrastructure combine with man-made drainage networks to change the pathways for precipitation. Some direct recharge is lost, but additional recharge can occur from storm drainage systems. Large amounts of water are imported into most cities for supply, distributed through underground pipes, and collected again in sewers or septic tanks. The leaks from these pipe networks often provide substantial recharge. Sources of recharge in urban areas are identified through piezometry, chemical signatures, and water balances. All three approaches have problems. Recharge is quantified either by individual components (direct recharge, water-mains leakage, septic tanks, etc.) or holistically. Working with individual components requires large amounts of data, much of which is uncertain and is likely to lead to large uncertainties in the final result. Recommended holistic approaches include the use of groundwater modelling and solute balances, where various types of data are integrated. Urban recharge remains an under-researched topic, with few high-quality case studies reported in the literature.

  15. The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.

    Science.gov (United States)

    Côté, Richard G; Jones, Philip; Martens, Lennart; Kerrien, Samuel; Reisinger, Florian; Lin, Quan; Leinonen, Rasko; Apweiler, Rolf; Hermjakob, Henning

    2007-10-18

    Each major protein database uses its own conventions when assigning protein identifiers. Resolving the various, potentially unstable, identifiers that refer to identical proteins is a major challenge. This is a common problem when attempting to unify datasets that have been annotated with proteins from multiple data sources or querying data providers with one flavour of protein identifiers when the source database uses another. Partial solutions for protein identifier mapping exist but they are limited to specific species or techniques and to a very small number of databases. As a result, we have not found a solution that is generic enough and broad enough in mapping scope to suit our needs. We have created the Protein Identifier Cross-Reference (PICR) service, a web application that provides interactive and programmatic (SOAP and REST) access to a mapping algorithm that uses the UniProt Archive (UniParc) as a data warehouse to offer protein cross-references based on 100% sequence identity to proteins from over 70 distinct source databases loaded into UniParc. Mappings can be limited by source database, taxonomic ID and activity status in the source database. Users can copy/paste or upload files containing protein identifiers or sequences in FASTA format to obtain mappings using the interactive interface. Search results can be viewed in simple or detailed HTML tables or downloaded as comma-separated values (CSV) or Microsoft Excel (XLS) files suitable for use in a local database or a spreadsheet. Alternatively, a SOAP interface is available to integrate PICR functionality in other applications, as is a lightweight REST interface. We offer a publicly available service that can interactively map protein identifiers and protein sequences to the majority of commonly used protein databases. Programmatic access is available through a standards-compliant SOAP interface or a lightweight REST interface. The PICR interface, documentation and code examples are available at

  16. The Protein Identifier Cross-Referencing (PICR service: reconciling protein identifiers across multiple source databases

    Directory of Open Access Journals (Sweden)

    Leinonen Rasko

    2007-10-01

    Full Text Available Abstract Background Each major protein database uses its own conventions when assigning protein identifiers. Resolving the various, potentially unstable, identifiers that refer to identical proteins is a major challenge. This is a common problem when attempting to unify datasets that have been annotated with proteins from multiple data sources or querying data providers with one flavour of protein identifiers when the source database uses another. Partial solutions for protein identifier mapping exist but they are limited to specific species or techniques and to a very small number of databases. As a result, we have not found a solution that is generic enough and broad enough in mapping scope to suit our needs. Results We have created the Protein Identifier Cross-Reference (PICR service, a web application that provides interactive and programmatic (SOAP and REST access to a mapping algorithm that uses the UniProt Archive (UniParc as a data warehouse to offer protein cross-references based on 100% sequence identity to proteins from over 70 distinct source databases loaded into UniParc. Mappings can be limited by source database, taxonomic ID and activity status in the source database. Users can copy/paste or upload files containing protein identifiers or sequences in FASTA format to obtain mappings using the interactive interface. Search results can be viewed in simple or detailed HTML tables or downloaded as comma-separated values (CSV or Microsoft Excel (XLS files suitable for use in a local database or a spreadsheet. Alternatively, a SOAP interface is available to integrate PICR functionality in other applications, as is a lightweight REST interface. Conclusion We offer a publicly available service that can interactively map protein identifiers and protein sequences to the majority of commonly used protein databases. Programmatic access is available through a standards-compliant SOAP interface or a lightweight REST interface. The PICR

  17. Identifying Hendra virus diversity in pteropid bats.

    Directory of Open Access Journals (Sweden)

    Ina Smith

    Full Text Available Hendra virus (HeV causes a zoonotic disease with high mortality that is transmitted to humans from bats of the genus Pteropus (flying foxes via an intermediary equine host. Factors promoting spillover from bats to horses are uncertain at this time, but plausibly encompass host and/or agent and/or environmental factors. There is a lack of HeV sequence information derived from the natural bat host, as previously sequences have only been obtained from horses or humans following spillover events. In order to obtain an insight into possible variants of HeV circulating in flying foxes, collection of urine was undertaken in multiple flying fox roosts in Queensland, Australia. HeV was found to be geographically widespread in flying foxes with a number of HeV variants circulating at the one time at multiple locations, while at times the same variant was found circulating at disparate locations. Sequence diversity within variants allowed differentiation on the basis of nucleotide changes, and hypervariable regions in the genome were identified that could be used to differentiate circulating variants. Further, during the study, HeV was isolated from the urine of flying foxes on four occasions from three different locations. The data indicates that spillover events do not correlate with particular HeV isolates, suggesting that host and/or environmental factors are the primary determinants of bat-horse spillover. Thus future spillover events are likely to occur, and there is an on-going need for effective risk management strategies for both human and animal health.

  18. Identifying Fishes through DNA Barcodes and Microarrays.

    Science.gov (United States)

    Kochzius, Marc; Seidel, Christian; Antoniou, Aglaia; Botla, Sandeep Kumar; Campo, Daniel; Cariani, Alessia; Vazquez, Eva Garcia; Hauschild, Janet; Hervet, Caroline; Hjörleifsdottir, Sigridur; Hreggvidsson, Gudmundur; Kappel, Kristina; Landi, Monica; Magoulas, Antonios; Marteinsson, Viggo; Nölte, Manfred; Planes, Serge; Tinti, Fausto; Turan, Cemal; Venugopal, Moleyur N; Weber, Hannes; Blohm, Dietmar

    2010-09-07

    International fish trade reached an import value of 62.8 billion Euro in 2006, of which 44.6% are covered by the European Union. Species identification is a key problem throughout the life cycle of fishes: from eggs and larvae to adults in fisheries research and control, as well as processed fish products in consumer protection. This study aims to evaluate the applicability of the three mitochondrial genes 16S rRNA (16S), cytochrome b (cyt b), and cytochrome oxidase subunit I (COI) for the identification of 50 European marine fish species by combining techniques of "DNA barcoding" and microarrays. In a DNA barcoding approach, neighbour Joining (NJ) phylogenetic trees of 369 16S, 212 cyt b, and 447 COI sequences indicated that cyt b and COI are suitable for unambiguous identification, whereas 16S failed to discriminate closely related flatfish and gurnard species. In course of probe design for DNA microarray development, each of the markers yielded a high number of potentially species-specific probes in silico, although many of them were rejected based on microarray hybridisation experiments. None of the markers provided probes to discriminate the sibling flatfish and gurnard species. However, since 16S-probes were less negatively influenced by the "position of label" effect and showed the lowest rejection rate and the highest mean signal intensity, 16S is more suitable for DNA microarray probe design than cty b and COI. The large portion of rejected COI-probes after hybridisation experiments (>90%) renders the DNA barcoding marker as rather unsuitable for this high-throughput technology. Based on these data, a DNA microarray containing 64 functional oligonucleotide probes for the identification of 30 out of the 50 fish species investigated was developed. It represents the next step towards an automated and easy-to-handle method to identify fish, ichthyoplankton, and fish products.

  19. Identifying Fishes through DNA Barcodes and Microarrays.

    Directory of Open Access Journals (Sweden)

    Marc Kochzius

    Full Text Available BACKGROUND: International fish trade reached an import value of 62.8 billion Euro in 2006, of which 44.6% are covered by the European Union. Species identification is a key problem throughout the life cycle of fishes: from eggs and larvae to adults in fisheries research and control, as well as processed fish products in consumer protection. METHODOLOGY/PRINCIPAL FINDINGS: This study aims to evaluate the applicability of the three mitochondrial genes 16S rRNA (16S, cytochrome b (cyt b, and cytochrome oxidase subunit I (COI for the identification of 50 European marine fish species by combining techniques of "DNA barcoding" and microarrays. In a DNA barcoding approach, neighbour Joining (NJ phylogenetic trees of 369 16S, 212 cyt b, and 447 COI sequences indicated that cyt b and COI are suitable for unambiguous identification, whereas 16S failed to discriminate closely related flatfish and gurnard species. In course of probe design for DNA microarray development, each of the markers yielded a high number of potentially species-specific probes in silico, although many of them were rejected based on microarray hybridisation experiments. None of the markers provided probes to discriminate the sibling flatfish and gurnard species. However, since 16S-probes were less negatively influenced by the "position of label" effect and showed the lowest rejection rate and the highest mean signal intensity, 16S is more suitable for DNA microarray probe design than cty b and COI. The large portion of rejected COI-probes after hybridisation experiments (>90% renders the DNA barcoding marker as rather unsuitable for this high-throughput technology. CONCLUSIONS/SIGNIFICANCE: Based on these data, a DNA microarray containing 64 functional oligonucleotide probes for the identification of 30 out of the 50 fish species investigated was developed. It represents the next step towards an automated and easy-to-handle method to identify fish, ichthyoplankton, and fish products.

  20. Identifying enabling management practices for employee engagement

    Directory of Open Access Journals (Sweden)

    Marius Joubert

    2011-12-01

    Full Text Available Orientation: A currently emerging viewpoint is that today's management practices no longer add value to organisations. The focus of this article is to conduct a systematic review of the scholarly literature on management practices that could be related to employee engagement. Research purpose: This study searched for evidence in support of the notion of a management value chain, and enabling management practices within each value chain component that could relate to employee engagement. Motivation for the study: An alternative management value chain model could contribute towards a better understanding of which management practices may potentially impact employee engagement. Research design, approach, and method: This is a non-empirical (theoretical study, based on a systematic, in-depth literature review to identify the key management components and enabling practices within this proposed management value chain. Scholarly research databases were sourced for relevant peer reviewed research conducted since 1990, not excluding important contributions prior to 1990. The literature was systematically searched, selected, studied, and contextualized within this study. Main findings: Support was found for the notion of a management value chain, for enabling management practices within each proposed management value chain component, and it was also established these management practices indeed have an impact on employee engagement. Practical/managerial/implications: The possibility that management work can be presented as a generic management value chain allows managers to approach engaging management practices more systematically. Contribution/value-add: This study highlights the importance of some management practices that have never been seen as part of management work.

  1. Electroencephalographic identifiers of motor adaptation learning

    Science.gov (United States)

    Özdenizci, Ozan; Yalçın, Mustafa; Erdoğan, Ahmetcan; Patoğlu, Volkan; Grosse-Wentrup, Moritz; Çetin, Müjdat

    2017-08-01

    Objective. Recent brain-computer interface (BCI) assisted stroke rehabilitation protocols tend to focus on sensorimotor activity of the brain. Relying on evidence claiming that a variety of brain rhythms beyond sensorimotor areas are related to the extent of motor deficits, we propose to identify neural correlates of motor learning beyond sensorimotor areas spatially and spectrally for further use in novel BCI-assisted neurorehabilitation settings. Approach. Electroencephalographic (EEG) data were recorded from healthy subjects participating in a physical force-field adaptation task involving reaching movements through a robotic handle. EEG activity recorded during rest prior to the experiment and during pre-trial movement preparation was used as features to predict motor adaptation learning performance across subjects. Main results. Subjects learned to perform straight movements under the force-field at different adaptation rates. Both resting-state and pre-trial EEG features were predictive of individual adaptation rates with relevance of a broad network of beta activity. Beyond sensorimotor regions, a parieto-occipital cortical component observed across subjects was involved strongly in predictions and a fronto-parietal cortical component showed significant decrease in pre-trial beta-powers for users with higher adaptation rates and increase in pre-trial beta-powers for users with lower adaptation rates. Significance. Including sensorimotor areas, a large-scale network of beta activity is presented as predictive of motor learning. Strength of resting-state parieto-occipital beta activity or pre-trial fronto-parietal beta activity can be considered in BCI-assisted stroke rehabilitation protocols with neurofeedback training or volitional control of neural activity for brain-robot interfaces to induce plasticity.

  2. Identifying organizational cultures that promote patient safety.

    Science.gov (United States)

    Singer, Sara J; Falwell, Alyson; Gaba, David M; Meterko, Mark; Rosen, Amy; Hartmann, Christine W; Baker, Laurence

    2009-01-01

    Safety climate refers to shared perceptions of what an organization is like with regard to safety, whereas safety culture refers to employees' fundamental ideology and orientation and explains why safety is pursued in the manner exhibited within a particular organization. Although research has sought to identify opportunities for improving safety outcomes by studying patterns of variation in safety climate, few empirical studies have examined the impact of organizational characteristics such as culture on hospital safety climate. This study explored how aspects of general organizational culture relate to hospital patient safety climate. In a stratified sample of 92 U.S. hospitals, we sampled 100% of senior managers and physicians and 10% of other hospital workers. The Patient Safety Climate in Healthcare Organizations and the Zammuto and Krakower organizational culture surveys measured safety climate and group, entrepreneurial, hierarchical, and production orientation of hospitals' culture, respectively. We administered safety climate surveys to 18,361 personnel and organizational culture surveys to a 5,894 random subsample between March 2004 and May 2005. Secondary data came from the 2004 American Hospital Association Annual Hospital Survey and Dun & Bradstreet. Hierarchical linear regressions assessed relationships between organizational culture and safety climate measures. Aspects of general organizational culture were strongly related to safety climate. A higher level of group culture correlated with a higher level of safety climate, but more hierarchical culture was associated with lower safety climate. Aspects of organizational culture accounted for more than threefold improvement in measures of model fit compared with models with controls alone. A mix of culture types, emphasizing group culture, seemed optimal for safety climate. Safety climate and organizational culture are positively related. Results support strategies that promote group orientation and

  3. An approach to identify urban groundwater recharge

    Directory of Open Access Journals (Sweden)

    E. Vázquez-Suñé

    2010-10-01

    Full Text Available Evaluating the proportion in which waters from different origins are mixed in a given water sample is relevant for many hydrogeological problems, such as quantifying total recharge, assessing groundwater pollution risks, or managing water resources. Our work is motivated by urban hydrogeology, where waters with different chemical signature can be identified (losses from water supply and sewage networks, infiltration from surface runoff and other water bodies, lateral aquifers inflows, .... The relative contribution of different sources to total recharge can be quantified by means of solute mass balances, but application is hindered by the large number of potential origins. Hence, the need to incorporate data from a large number of conservative species, the uncertainty in sources concentrations and measurement errors. We present a methodology to compute mixing ratios and end-members composition, which consists of (i Identification of potential recharge sources, (ii Selection of tracers, (iii Characterization of the hydrochemical composition of potential recharge sources and mixed water samples, and (iv Computation of mixing ratios and reevaluation of end-members. The analysis performed in a data set from samples of the Barcelona city aquifers suggests that the main contributors to total recharge are the water supply network losses (22%, the sewage network losses (30%, rainfall, concentrated in the non-urbanized areas (17%, from runoff infiltration (20%, and the Besòs River (11%. Regarding species, halogens (chloride, fluoride and bromide, sulfate, total nitrogen, and stable isotopes (18O, 2H, and 34S behaved quite conservatively. Boron, residual alkalinity, EDTA and Zn did not. Yet, including these species in the computations did not affect significantly the proportion estimations.

  4. Towards identifying biological processes with transit spectroscopy

    Science.gov (United States)

    Marco, Rocchetto

    2015-07-01

    Over the past decades transit spectroscopy has become one of the pioneering methods to characterise exoplanetary atmospheres. With the increasing number of observations, and the advent of new ground and spaced based instruments, it is now crucial to find the most optimal and objective methodologies to interpret these data, and understand the information content they convey. This is particularly true for smaller and fainter Earth like type planets, where atmospheric spectroscopy represents a unique way to detect biomarkers such as Ozone or the vegetation's red edge. In this conference we will present a new take on the spectral retrieval of transiting planets, with particular focus on super-Earth and Earth atmospheres, and the potential to detect biological processes. Using TauREx (Waldmann et al. 2015a,b.), a new line-by-line radiative transfer atmospheric retrieval framework for transmission and emission spectroscopy of exoplanetary atmospheres, we investigate the impact of signal to noise, spectral resolution and wavelength coverage on the retrievability of individual model parameters from transit spectra of exoplanets, and put our models to test (Rocchetto et al. 2015). For the first time, we analyse in a systematic way large grids of spectra generated for different observing scenarios. We perform thousands of retrievals aimed to fully map the degeneracies and understand the statistics of current exoplanetary retrieval models, in the limiting signal-to-noise regime of super-Earth and Earth observations. This work allows us to understand the fundamental observational thresholds required to constrain the properties of these foreign worlds, and to identify possible biological signatures.

  5. CONVENTIONAL VIDEOENDOSCOPY CAN IDENTIFY HELICOBACTER PYLORI GASTRITIS?

    Science.gov (United States)

    Gomes, Alexandre; Skare, Thelma Larocca; Prestes, Manoel Alberto; Costa, Maiza da Silva; Petisco, Roberta Dombroski; Ramos, Gabriela Piovezani

    2016-01-01

    Studies with latest technologies such as endoscopy with magnification and chromoendoscopy showed that various endoscopic aspects are clearly related to infection by Helicobacter pylori (HP). The description of different patterns of erythema in gastric body under magnification of images revived interest in identifying these patterns by standard endoscopy. To validate the morphologic features of gastric mucosa related to H. pylori infection gastritis allowing predictability of their diagnosis as well as proper targeting biopsies. Prospective study of 339 consecutive patients with the standard videoendoscope image analysis were obtained, recorded and stored in a program database. These images were studied with respect to the presence or absence of H. pylori, diagnosed by rapid urease test and/or by histological analysis. Were studied: a) normal mucosa appearance; b) mucosal nodularity; c) diffuse nonspecific erythema or redness (with or without edema of folds and exudate) of antrum and body; d) mosaic pattern with focal area of hyperemia; e) erythema in streaks or bands (red streak); f) elevated (raised) erosion; g) flat erosions; h) fundic gland polyps. The main exclusion criteria were the use of drugs, HP pre-treatment and other entities that could affect results. Applying the exclusion criteria, were included 170 of the 339 patients, of which 52 (30.58%) were positive for HP and 118 negative. On the positive findings, the most associated with infection were: nodularity in the antrum (26.92%); presence of raised erosion (15.38%) and mosaic mucosa in the body (21.15%). On the negative group the normal appearance of the mucosa was 66.94%; erythema in streaks or bands in 9.32%; flat erosions 11.86%; and fundic gland polyps 11.86%. Endoscopic findings are useful in the predictability of the result and in directing biopsies. The most representative form of HP related gastritis was the nodularity of the antral mucosa. The raised erosion and mucosa in mosaic in the body

  6. POLINIZACIÓN POR ABEJAS EN Syagrus orinocensis (ARECACEAE EN LA ORINOQUIA COLOMBIANA

    Directory of Open Access Journals (Sweden)

    Luis Alberto NUÑEZ AVELLANEDA

    2017-01-01

    Full Text Available La ecología de la polinización de Syagrus orinocensis fue estudiada durante tres períodos reproductivos, en un bosque de piedemonte en Casanare, Orinoquia colombiana. Syagrus orinocensis crece hasta 10m., produce de una a cuatro inflorescencias bisexuales aunque ocasionalmente son unisexuales. Las bisexuales presentan flores estaminadas y pistiladas agrupadas en tríadas, y las unisexuales llevan sólo estaminadas en díadas. Las inflorescencias protándricas abren de día, y permanecieron activas 26 días; la fase masculina se extendió los primeros 15 días, siguió una fase inactiva por ocho días, y finalmente, la fase pistilada por tres días. Las inflorescencias fueron visitadas por 43 especies de insectos de los órdenes Coleoptera, Hymenoptera y Diptera. Los insectos visitaron las inflorescencias en fase masculina, donde buscaban polen y lugares para reproducirse, mientras que en la fase femenina buscaban néctar. Los polinizadores más efectivos fueron abejas meliponinas ( Apidae, Meliponini , que transfirieron adherido a su cuerpo el 83 % del polen. La presencia, constancia y eficiencia de abejas durante el estudio son evidencia sólida de melitofilia en palmas. Este caso de melitofilia permitió proponer los criterios para redefinir este tipo de polinización en palmas silvestres neotropicales.

  7. Pollination ecology of Syagrus smithii (Arecaceae, a palm with cantharophily from Colombian Amazon

    Directory of Open Access Journals (Sweden)

    Nilson Y. Guerrero-Olaya

    2017-04-01

    Full Text Available From the evaluation floral morphology, reproductive phenology, floral biology, floral visitors and pollinator’s definition, the reproduction strategy of a Syagrus smithii (Arecaeae in a Colombian Amazonia region was described. Syagrus smithii palms grow up to 10 m high and produce one to three bisexual inflorescences. The bisexual inflorescences bear staminate and pistillate flowers arranged in triads with a female central flower and two male sides. The inflorescences are protandric and open during daytime, remaining active for 28 days. The male phase extends for the first 14 days, which are followed by 10 days of an inactive phase; the pistillate phase lasts up to four days. The inflorescences of S. smithii were visited by 37 species of insects belonging to the orders Coleoptera, Hymenoptera and Diptera. All visitors get to the flowers in searching of abundant pollen, floral tissues that feed them and as sites of reproduction. The most effective pollinators of S. smithii were Mystrops sp nov. 2 and Mystrops sp nov. 3 (Nitudiladae: Coleoptera, and Microstates sp.2 and Sibinia sp. 1 (Curculionidae: Coleoptera were secondary pollinators. Since all species of major pollinators have developed their life cycles into inflorescences, we suggest the existence of a specialized system and mutual dependence between pollinators and the palm, which ensures the presence of pollinators throughout the year and individuals with viable seeds.

  8. Reproductive phenology of Mauritia flexuosa L. (Arecaceae in a coastal restinga environment in northeastern Brazil

    Directory of Open Access Journals (Sweden)

    F. N. Mendes

    Full Text Available Abstract The buriti, Mauritia flexuosa, is the most common palm in Brazil, where it has considerable ecological and economic importance. However, few data are available on the phenology of the species, mainly in coastal restinga ecosystems. The present study monitored the reproductive phenology of M. flexuosa in the restinga of Barreirinhas, in the Brazilian Northeast, and investigated the relationship between phenophases and climatic variables. The presence/absence of flowers and fruits was recorded monthly in 25 individuals of each sex between August, 2009, and October, 2012. There was no difference in the phenology of male and female specimens, with flowering and fruiting occurring exclusively in the dry season. We believe that the specific abiotic characteristics of the study environment, such as the intense sunlight and availability of water in the soil, contribute to the reproductive success of M. flexuosa in the dry season, with consequent germination and establishment of seedlings occurring during the subsequent rainy season.

  9. In vitro rescue of interspecific embryos from Elaeis guineensis x E. oleifera (Arecaceae

    Directory of Open Access Journals (Sweden)

    Paula Cristina da Silva Angelo

    2011-09-01

    Full Text Available The African oil palm (Elaeis guineensis is the most effective oil producer in tons per hectare. Nevertheless, its increasing cultivation in Latin America is harmed by the “lethal yellowing”. Genetic resistance to this anomaly can be found in the germplasm of American oil palm or caiaué (E. oleifera, a native species from the Amazon rainforest. However, the procedures adopted to induce seeds of E. guineensis to germination frequently result mild for interespecific hybrids. Embryo in vitro cultivation can be a viable option. This work was aimed initially to test liquid MS medium supplemented with different glucose or sucrose concentrations for the in vitro cultivation of zygotic embryos from E. guineensis x E. oleifera controlled pollinations. Additionally we investigated different compost mixtures to acclimatize the regenerated hybrid plantlets. Concentrations of 10, 20 and 30g/L of both sugars were tested on flasks containing five mature zygotic embryos, with 15 repetitions per treatment in a total of 450 explants. The number of embryos displaying shoots and radicles at least 2mm in length per experimental unit was evaluated during phase one of in vitro cultivation. Plantlets displaying shoots and radicles were transferred to phase two of in vitro cultivation and subsequently to acclimatization, under 70% shading with manual water supply. The experiments of acclimatization were conducted with 130 plantlets randomly distributed in pure horticultural compost, 3:1 or 1:1 compost:sand mixtures and each plantlet was defined as an experimental unit. Data were submitted to ANOVA, t test and analyzes of correlation (p≤0.05. Highest emergence rates were 97% for shoots and 73% for radicles, observed in MS medium supplemented with 20g/L (110mM of glucose. This sugar in concentrations of 20 or 30g/L provided balanced shoot/root development, and this was considered one of the reasons for the higher frequency of plantlet establishment. The survival percentage was 55% after the first 43 days of acclimatization and by the fourth month, 66 plants developed simultaneously longer shoot and root systems in pure horticultural compost. in conclusion, radicle development was an impairment to plantlet establishment and was overcame under media with glucose above 110mM. Acclimatization could benefit from an extended period of in vitro development. Rev. Biol. Trop. 59 (3: 1081-1088. Epub 2011 September 01.Elaeis guineensis es el productor de aceite más eficaz en toneladas por hectárea, su cultivo, cada vez mayor en América Latina, se ha visto perjudicado por el “amarilleamiento letal”. La resistencia genética a esta anomalía se puede encontrar en el germoplasma de la palma aceitera americana o caiaué (E. oleifera, una especie nativa de la selva amazónica. Sin embargo, los procedimientos adoptados para inducir la germinación de las semillas de E. guineensis frecuentemente produce resultados modestos para híbridos interespecíficos. El cultivo de embriones in vitro puede ser una opción viable. En este trabajo se probó el medio líquido MS complementado con diferentes concentraciones de glucosa o sacarosa en el cultivo in vitro de embriones cigóticos de E. guineensis x E. oleifera originados de polinización controlada. Además se investigaron diferentes mezclas de compost para aclimatar los híbridos regenerados. Las concentraciones de 10, 20 y 30 g/L de ambos azúcares se probaron en frascos que contenían cinco embriones cigóticos maduros, con 15 repeticiones por tratamiento y un total de 450 explantes. El número de embriones que muestran brotes y radículas de al menos 2mm de longitud por unidad experimental se evaluó durante la primera fase de cultivo in vitro. Las plántulas que mostraron brotes y radículas fueron trasladadas a la segunda fase de cultivo in vitro y, posteriormente, se aclimataron, por debajo de 70% de sombra con el suministro manual de agua. Los experimentos de aclimatación se llevaron a cabo con 130 plántulas distribuidas al azar en el compost hortícola puro, compost 3:1 o 1:1: mezclas de arena y cada plántula se definió como una unidad experimental. Los datos fueron sometidos a un análisis de varianza, prueba t y análisis de correlación (p≤0.05. Las tasas más altas de emergencia fueron 97% y 73% para brotes y radículas respectivamente, en el medio MS complementado con 20g/L (110mM de glucosa. Este azúcar en concentraciones de 20 o 30g/L permitió un desarrollo balanceado de brotes/desarrollo de raíces, que fue considerado como una de las razones de la alta frecuencia de establecimiento de las plántulas. El porcentaje de supervivencia fue de un 55% después de los primeros 43 días de aclimatación y por el cuarto mes, 66 plantas desarrollaron simultáneamente hojas largas y un sistema radical en el compost hortícola puro. En conclusión, el desarrollo radicular fue un impedimento para el establecimiento de plántulas y se superó en el medio con glucosa por encima de 110mM. La aclimatación podría beneficiarse con un largo período de desarrollo in vitro.

  10. Constituintes apolares do fruto do açaí (Euterpe oleracea M. - Arecaceae)

    OpenAIRE

    I.S.B. Mantovani; S.B.O. Fernandes; F.S. Menezes

    2003-01-01

    Euterpe oleracea M. (açaí) é uma palmeira economicamente importante encontrada em vários locais do Brasil. O palmito é uma iguaria bastante apreciada em todo o mundo enquanto o fruto é apenas consumido no Brasil. Esse estudo enfocou a composição química do extrato hexânico obtido de diferentes partes do fruto: o pericarpo, o endocarpo e o fruto na íntegra. Ficou comprovado não haver diferença química significativa na análise cromatográfica dos três extratos. Euterpe oleracea M. (açaí) is a...

  11. Aphandra natalia(Arecaceae – a little known source of piassaba fibers from the western Amazon

    Directory of Open Access Journals (Sweden)

    Mette Kronborg

    2014-03-01

    Full Text Available Aphandra natalia(Balslev & Henderson Barfod is a multipurpose palm that is exploited both commercially and for subsistence purposes. Its fibers are important in Peruvian and Ecuadorean broom industries and support many people economically. In Brazil, it is found in the western part of Acre, where it is the main source for a local broom market. Data from fieldwork in Peru (2007 suggests that the variation in gross profit per kilogram of fiber is considerable among the different segments in the broom industry. Harvesters and distributors earn negligible amounts of money whereas manufacturers reap of the major part of the earnings. Fiber extraction appears to be sustainable in Ecuador and in some parts of Peru, whereas in other parts of Peru unsustainable harvest occurs, involving felling of entire palm trees for the harvest of fibers. The same destructive extraction method is used in Brazil, where the palm is becoming rare in its natural distribution area.

  12. [Population dynamics of the palm Euterpe oleracea (Arecaceae) from flooded forests in Choco, Colombian Pacific].

    Science.gov (United States)

    Arango, Diego A; Duque, Alvaro J; Muñoz, Edinson

    2010-03-01

    The palm Euterpe oleracea is a dominant and promising species in flood plains of the Atrato river, Choco region of Colombia. We assessed the population dynamics of this species through growth rates, mortality and recruitment patterns for a period of two and a half years. Dynamic rates were compared among mixed and pure flood plain palm forests. These forests types were associated to different flooding regimes. Trees and palms were thinned in a portion for each forest type, the rest was left undisturbed. We used projection matrices to follow population trends. Thinning increased the transition probability of smaller individuals, but decreased it for larger individuals, as is typical of light demanding species. Thinning also increased mortality rates in almost all size classes, but did not affect recruitment rates. Under natural conditions, the E. oleracea populations are in equilibrium in pure and mixed forests. Thinning increased population growth in both forest types, suggesting the role played by density-dependent processes on the population size of this species.

  13. Historical evidence of the Spanish introduction of date palm (Phoenix dactylifera L., Arecaceae) into the Americas

    Science.gov (United States)

    America’s date palm (Phoenix dactylifera L.) groves can be found from 36o N Lat. (USA) to 21o S Lat. (Chile) and from 63o W Long. (Venezuela) to 117o W Long. (USA), at elevations from sea level 2000 m (Colombia). However, successful production of ripe dates is possible only in the arid regions of Pe...

  14. Phylogeny and divergence times of Bactridinae (Arecaceae, Palmae) based on plastid and nuclear DNA sequences

    OpenAIRE

    Eiserhardt, W. L.; Pintaud, Jean-Christophe; Asmussen-Lange, C.; Hahn, W J; Bernal, R.; Balslev, H; Borchsenius, F.

    2011-01-01

    Bactridinae include about 150 species of spiny Neotropical palms in five genera that are ecologically important in several vegetation types such as open woodland (Acrocomia), lowland rainforest (Astrocaryum, Bactris), and montane forest (Aiphanes). The subtribe also includes the only exclusively lianescent palm genus in the Neotropics (Desmoncus). We present a fully resolved molecular phylogeny of 41 species of Bactridinae, representing all genera as well as most of the currently accepted inf...

  15. In vitro rescue of interspecific embryos from Elaeis guineensis x E. oleifera (Arecaceae

    Directory of Open Access Journals (Sweden)

    Paula Cristina da Silva Angelo

    2011-09-01

    Full Text Available The African oil palm (Elaeis guineensis is the most effective oil producer in tons per hectare. Nevertheless, its increasing cultivation in Latin America is harmed by the “lethal yellowing”. Genetic resistance to this anomaly can be found in the germplasm of American oil palm or caiaué (E. oleifera, a native species from the Amazon rainforest. However, the procedures adopted to induce seeds of E. guineensis to germination frequently result mild for interespecific hybrids. Embryo in vitro cultivation can be a viable option. This work was aimed initially to test liquid MS medium supplemented with different glucose or sucrose concentrations for the in vitro cultivation of zygotic embryos from E. guineensis x E. oleifera controlled pollinations. Additionally we investigated different compost mixtures to acclimatize the regenerated hybrid plantlets. Concentrations of 10, 20 and 30g/L of both sugars were tested on flasks containing five mature zygotic embryos, with 15 repetitions per treatment in a total of 450 explants. The number of embryos displaying shoots and radicles at least 2mm in length per experimental unit was evaluated during phase one of in vitro cultivation. Plantlets displaying shoots and radicles were transferred to phase two of in vitro cultivation and subsequently to acclimatization, under 70% shading with manual water supply. The experiments of acclimatization were conducted with 130 plantlets randomly distributed in pure horticultural compost, 3:1 or 1:1 compost:sand mixtures and each plantlet was defined as an experimental unit. Data were submitted to ANOVA, t test and analyzes of correlation (p≤0.05. Highest emergence rates were 97% for shoots and 73% for radicles, observed in MS medium supplemented with 20g/L (110mM of glucose. This sugar in concentrations of 20 or 30g/L provided balanced shoot/root development, and this was considered one of the reasons for the higher frequency of plantlet establishment. The survival percentage was 55% after the first 43 days of acclimatization and by the fourth month, 66 plants developed simultaneously longer shoot and root systems in pure horticultural compost. in conclusion, radicle development was an impairment to plantlet establishment and was overcame under media with glucose above 110mM. Acclimatization could benefit from an extended period of in vitro development. Rev. Biol. Trop. 59 (3: 1081-1088. Epub 2011 September 01.

  16. The shoot apical meristem of oil palm (Elaeis guineensis; Arecaceae): developmental progression and dynamics.

    Science.gov (United States)

    Jouannic, Stefan; Lartaud, Marc; Hervé, Jonathan; Collin, Myriam; Orieux, Yves; Verdeil, Jean-Luc; Tregear, James W

    2011-12-01

    Oil palm, an unbranched perennial monocotyledon, possesses a single shoot apical meristem (SAM), which is responsible for the initiation of the entire above-ground structure of the plant. To compare the palm SAM structure with those of other monocots and to study variations in its structure throughout the life of the plant, its organization was characterized from the embryonic stage to that of the reproductive plant. SAM structure was studied by a combination of stained histological sections, light and confocal microscopy, and serial section-based three-dimensional reconstructions. The oil palm SAM is characterized by two developmental phases: a juvenile phase with a single tunica-corpus structure displaying a gradual increase in size; and a mature phase characterized by a stable size, a modified shape and an established histological zonation pattern. In mature plants, fluctuations in SAM shape and volume occur, mainly as a consequence of changes in the central zone, possibly in relation to leaf initiation. Development of the oil palm SAM is characterized by a juvenile to mature phase transition accompanied by establishment of a zonal pattern and modified shape. SAM zonation is dynamic during the plastochron period and displays distinct features compared with other monocots.

  17. In vitro rescue of interspecific embryos from Elaeis guineensis x E. oleifera (Arecaceae).

    Science.gov (United States)

    Angelo, Paula Cristina da Silva; Moraes, Larissa Alexandra Cardoso; Lopes, Ricardo; Sousa, Nelcimar Reis; da Cunha, Raimundo Nonato Vieira; Quisen, Regina Caetano

    2011-09-01

    The African oil palm (Elaeis guineensis) is the most effective oil producer in tons per hectare. Nevertheless, its increasing cultivation in Latin America is harmed by the "lethal yellowing". Genetic resistance to this anomaly can be found in the germplasm of American oil palm or caiaué (E. oleifera), a native species from the Amazon rainforest. However, the procedures adopted to induce seeds of E. guineensis to germination frequently result mild for interespecific hybrids. Embryo in vitro cultivation can be a viable option. This work was aimed initially to test liquid MS medium supplemented with different glucose or sucrose concentrations for the in vitro cultivation of zygotic embryos from E. guineensis x E. oleifera controlled pollinations. Additionally we investigated different compost mixtures to acclimatize the regenerated hybrid plantlets. Concentrations of 10, 20 and 30g/L of both sugars were tested on flasks containing five mature zygotic embryos, with 15 repetitions per treatment in a total of 450 explants. The number of embryos displaying shoots and radicles at least 2mm in length per experimental unit was evaluated during phase one of in vitro cultivation. Plantlets displaying shoots and radicles were transferred to phase two of in vitro cultivation and subsequently to acclimatization, under 70% shading with manual water supply. The experiments of acclimatization were conducted with 130 plantlets randomly distributed in pure horticultural compost, 3:1 or 1:1 compost:sand mixtures and each plantlet was defined as an experimental unit. Data were submitted to ANOVA, t test and analyzes of correlation (p < or = 0.05). Highest emergence rates were 97% for shoots and 73% for radicles, observed in MS medium supplemented with 20g/L (110mM) of glucose. This sugar in concentrations of 20 or 30g/L provided balanced shoot/root development, and this was considered one of the reasons for the higher frequency of plantlet establishment. The survival percentage was 55% after the first 43 days of acclimatization and by the fourth month, 66 plants developed simultaneously longer shoot and root systems in pure horticultural compost. In conclusion, radicle development was an impairment to plantlet establishment and was overcame under media with glucose above 110mM. Acclimatization could benefit from an extended period of in vitro development.

  18. Commonness of Amazonian palm (Arecaceae) species: Cross-scale links and potential determinants

    DEFF Research Database (Denmark)

    Kristiansen, Thea; Svenning, J.-C.; Grández, César

    2009-01-01

    in a western Amazonian landscape, while commonness at the largest scale (continental range size) was estimated from digitized distribution maps. Landscape frequency was positively related to both local abundance and continental range size, which, however, were not related to each other. Landscape frequency...... commonness in the Amazonian palm flora appear to be scale-dependent, with the unrelated local scale abundance and continental range size probably being controlled by different driving factors. Interestingly, commonness at the intermediate, landscape scale seems linked to both the smaller and the larger scale...

  19. In vitro morphogenesis in zygotic embryos and leaf sheaths of Euterpe edulis Martius (Arecaceae

    Directory of Open Access Journals (Sweden)

    Cleber Witt Saldanha

    2006-01-01

    Full Text Available Different factors associated to somatic embryogenesis induction in Euterpe edulis were investigated in thepresent study. Zygotic embryos were inoculated in MS culture medium supplemented with 2.4-D (0, 30, 35, 40 mg L-1, 3 mgL-1 2iP, 0.5 g L-1 glutamine, 0.5 g L-1 activated charcoal; 30 g L-1 glucose or sucrose and gelled with 5 g L-1 Agar. Leaf sheathswere inoculated on MS culture medium supplemented with Picloram (72.3 mg L-1 or 2.4-D (66.3 mg L-1, 3 mg L-1 2iP,glutamine (0; 0.29; 0.58; 1.17 g L-1, 1.5 g L-1 activated charcoal and gelled with 2.5 g L-1 Phytagel®. Indirect somatic embryoswere induced from zygotic embryos on culture medium with 40 mg L-1 2.4-D and 30 g L-1 sucrose. The highest percentage ofcallus formation on leaf sheaths occurred in MS culture medium supplemented with 1.17 g L-1 glutamine and 66.3 mg L-1 2.4-D.

  20. Coconut (Cocos nucifera L.: Arecaceae): in health promotion and disease prevention.

    Science.gov (United States)

    DebMandal, Manisha; Mandal, Shyamapada

    2011-03-01

    Coconut, Cocos nucifera L., is a tree that is cultivated for its multiple utilities, mainly for its nutritional and medicinal values. The various products of coconut include tender coconut water, copra, coconut oil, raw kernel, coconut cake, coconut toddy, coconut shell and wood based products, coconut leaves, coir pith etc. Its all parts are used in someway or another in the daily life of the people in the traditional coconut growing areas. It is the unique source of various natural products for the development of medicines against various diseases and also for the development of industrial products. The parts of its fruit like coconut kernel and tender coconut water have numerous medicinal properties such as antibacterial, antifungal, antiviral, antiparasitic, antidermatophytic, antioxidant, hypoglycemic, hepatoprotective, immunostimulant. Coconut water and coconut kernel contain microminerals and nutrients, which are essential to human health, and hence coconut is used as food by the peoples in the globe, mainly in the tropical countries. The coconut palm is, therefore, eulogised as 'Kalpavriksha' (the all giving tree) in Indian classics, and thus the current review describes the facts and phenomena related to its use in health and disease prevention. Copyright © 2011 Hainan Medical College. Published by Elsevier B.V. All rights reserved.

  1. High tropical net diversification drives the New World latitudinal gradient in palm (Arecaceae) species richness

    DEFF Research Database (Denmark)

    Svenning, J.-C.; Borchsenius, Finn; Bjorholm, Stine Wendelboe

    2008-01-01

    within the phylogeny, and supplemented with the purely tip-level measure, mean number of species per genus (MS/G). Correlations and regressions, in combination with eigenvector-based spatial filtering, were used to assess the relationship between species richness, the net diversification measures......Aim Species richness exhibits striking geographical variation, but the processes that drive this variation are unresolved. We investigated the relative importance of two hypothesized evolutionary causes for the variation in palm species richness across the New World: time for diversification...... and evolutionary (net diversification) rate. Palms have a long history in the region, with the major clades diversifying during the Tertiary (65-2 Ma). Location Tropical and subtropical America (34° N-34° S; 33-120° W). Methods Using range maps, palm species richness was estimated in a 1° × 1° grid. Mean lineage...

  2. Testing the Water–Energy Theory on American Palms (Arecaceae) Using Geographically Weighted Regression

    DEFF Research Database (Denmark)

    Eiserhardt, Wolf L.; Bjorholm, Stine; Svenning, J.-C.

    2011-01-01

    Water and energy have emerged as the best contemporary environmental correlates of broad-scale species richness patterns. A corollary hypothesis of water–energy dynamics theory is that the influence of water decreases and the influence of energy increases with absolute latitude. We report the fir...

  3. Ecological interactions shape the dynamics of seed predation in Acrocomia aculeata (Arecaceae.

    Directory of Open Access Journals (Sweden)

    Anielle C F Pereira

    Full Text Available BACKGROUND: The complex network of direct and indirect relationships determines not only the species abundances but also the community characteristics such as diversity and stability. In this context, seed predation is a direct interaction that affects the reproductive success of the plant. For Acrocomia aculeata, the seed predation by Pachymerus cardo and Speciomerus revoili in post-dispersal may destroy more than 70% of the propagules and is influenced by the herbivory of the fruits during pre-dispersal. Fruits of plants with a higher level of herbivory during pre-dispersal are less attacked by predators in post-dispersal. We proposed a hypothesis that describes this interaction as an indirect defense mediated by fungi in a multitrophic interaction. As explanations, we proposed the predictions: i injuries caused by herbivores in the fruits of A. aculeata favor fungal colonization and ii the colonization of A. acuelata fruit by decomposing fungi reduces the selection of the egg-laying site by predator. METHODOLOGY/PRINCIPAL FINDINGS: For prediction (i, differences in the fungal colonization in fruits with an intact or damaged epicarp were evaluated in fruits exposed in the field. For prediction (ii, we performed fruit observations in the field to determine the number of eggs of P. cardo and/or S. revoili per fruit and the amount of fungal colonization in the fruits. In another experiment, in the laboratory, we use P. cardo females in a triple-choice protocol. Each insect to choose one of the three options: healthy fruits, fruits with fungus, or an empty pot. The proposed hypothesis was corroborated. Fruits with injuries in the epicarp had a higher fungal colonization, and fruits colonized by fungi were less attractive for egg-laying by seed predators. CONCLUSION/SIGNIFICANCE: This study emphasizes the importance of exploring the networks of interactions between multitrophic systems to understand the dynamics and maintenance of natural populations.

  4. Constituintes apolares do fruto do açaí (Euterpe oleracea M. - Arecaceae

    Directory of Open Access Journals (Sweden)

    I.S.B. Mantovani

    Full Text Available Euterpe oleracea M. (açaí é uma palmeira economicamente importante encontrada em vários locais do Brasil. O palmito é uma iguaria bastante apreciada em todo o mundo enquanto o fruto é apenas consumido no Brasil. Esse estudo enfocou a composição química do extrato hexânico obtido de diferentes partes do fruto: o pericarpo, o endocarpo e o fruto na íntegra. Ficou comprovado não haver diferença química significativa na análise cromatográfica dos três extratos.

  5. Twenty-five years of progress in understanding pollination mechanisms in palms (Arecaceae).

    Science.gov (United States)

    Barfod, Anders S; Hagen, Melanie; Borchsenius, Finn

    2011-12-01

    With more than 90 published studies of pollination mechanisms, the palm family is one of the better studied tropical families of angiosperms. Understanding palm-pollinator interactions has implications for tropical silviculture, agroforestry and horticulture, as well as for our understanding of palm evolution and diversification. We review the rich literature on pollination mechanisms in palms that has appeared since the last review of palm pollination studies was published 25 years ago. Visitors to palm inflorescences are attracted by rewards such as food, shelter and oviposition sites. The interaction between the palm and its visiting fauna represents a trade-off between the services provided by the potential pollinators and the antagonistic activities of other insect visitors. Evidence suggests that beetles constitute the most important group of pollinators in palms, followed by bees and flies. Occasional pollinators include mammals (e.g. bats and marsupials) and even crabs. Comparative studies of palm-pollinator interactions in closely related palm species document transitions in floral morphology, phenology and anatomy correlated with shifts in pollination vectors. Synecological studies show that asynchronous flowering and partitioning of pollinator guilds may be important regulators of gene flow between closely related sympatric taxa and potential drivers of speciation processes. Studies of larger plant-pollinator networks point out the importance of competition for pollinators between palms and other flowering plants and document how the insect communities in tropical forest canopies probably influence the reproductive success of palms. However, published studies have a strong geographical bias towards the South American region and a taxonomic bias towards the tribe Cocoseae. Future studies should try to correct this imbalance to provide a more representative picture of pollination mechanisms and their evolutionary implications across the entire family.

  6. Geographical ecology of the palms (Arecaceae): determinants of diversity and distributions across spatial scales

    DEFF Research Database (Denmark)

    Eiserhardt, Wolf L.; Svenning, J.-C.; Kissling, W. Daniel

    2011-01-01

    palm species distributions, community composition and species richness such as the abiotic environment (climate, soil chemistry, hydrology and topography), the biotic environment (vegetation structure and species interactions) and dispersal. The importance of contemporary vs. historical impacts...... to be important at landscape and broader scales, soil, topography and vegetation at landscape and local scales, hydrology at local scales, and dispersal at all scales. For community composition, soil appears important at regional and finer scales, hydrology, topography and vegetation at landscape and local scales.......g. climate on regional to finer scales, and hydrology and topography on landscape and broader scales. The importance of biotic interactions – apart from general vegetation structure effects – for the geographic ecology of palms is generally underexplored. Future studies should target scale...

  7. Establishment of Desmoncus orthacanthos Martius (Arecaceae: effect of inoculation with arbuscular mycorrhizae

    Directory of Open Access Journals (Sweden)

    José A Ramos-Zapata

    2006-03-01

    Full Text Available Inoculation with arbuscular mycorrhizal (AM fungi has often promoted increased growth of plants but very little work has been done in the tropics to evaluate the effects of inoculation on the establishment and development of seedlings in forests. Desmoncus orthacanthos Martius is a scandent palm present both in early and late succession, and consequently can be used in restoration processes. A test was conducted to determine the effect of AM on the establishment of Desmoncus orthacanthos in tropical forest in the Yucatan Peninsula, Mexico. Thirty inoculated and 30 non-inoculated seedlings were introduced in two sites of different successional age, a mature forest and an eight-year old abandoned cornfield (acahual.Survival and growth parameters were evaluated after 12 months. Leaf area and phosphorus, but not height, were greater in inoculated than non-inoculated plants in the forest but not in the acahual. However, mycorrhizae had a clear effect on plant survival in both sites, with a threefold increase in survival of inoculated compared with non-inoculated plants bassed on an odds ratio. The results suggest that inoculation will be important to increase the establishment of this commercially important palm. Rev. Biol. Trop. 54(1: 65-72. Epub 2006 Mar 31.La inoculación con hongos micorrizógenos arbusculares (AMpromueve un incremento en el crecimiento de las plantas, sin embargo poco trabajo se ha realizado en los trópicos para evaluar el efecto de la inoculación en el proceso de establecimiento de plántulas. Desmoncus orthacanthos Martius es una palmera trepadora que se distribuye tanto en etapas tempranas y tardías de la sucesión, por lo tanto puede ser empleada en procesos de restauración. Se realizó una prueba de establecimiento de D. orthacanthos en una selva tropical de la península de Yucatán, México. Treinta plántulas inoculadas y 30 no inoculadas se establecieron en dos sitios con diferentes etapas sucesionales: selva madura y un campo abandonado de maíz (acahual. Después de 12 meses el valor de área foliar y contenido de fósforo fue mayor en el tratamiento con micorrizas en la selva pero no en el acahual, sin embargo, el tratamiento con micorrizas mostró un claro efecto en la supervivencia de las palmeras en ambos sitios con un incremento tres veces mayor en la probabilidad de supervivencia de palmeras inoculadas comparadas con las no inoculadas de acuerdo al análisis de razón de disparidad (odds ratio. La inoculación podría ser importante para incrementar el establecimiento de esta palmera.

  8. New species of Uvariopsis (Annonaceae) and Laccosperma (Arecaceae/Palmae) from Monts de Cristal, Gabon.

    Science.gov (United States)

    Couvreur, Thomas L P; Niangadouma, Raoul

    2016-01-01

    Monts de Cristal National Park in northwest Gabon is one of the most species rich places in Central Africa. Here, we describe two new species, one in Annonaceae and one in palms. Uvariopsis citrata Couvreur & Niangadouma, sp. nov. is unique in the genus by emitting a strong lemon scent from the crushed leaves and young branches. Laccosperma cristalensis Couvreur & Niangadouma, sp. nov. is a rattan that lacks acanthophylls on the cirrus and has few pinnae. Complete descriptions, photographic illustrations, ecological information and preliminary IUCN conservation status are provided. For both species a data deficient (DD) status is proposed. These new species underline once again that the Monts de Cristal National Park is yet incompletely known botanically.

  9. Establishment of Desmoncus orthacanthos Martius (Arecaceae): effect of inoculation with arbuscular mycorrhizae.

    Science.gov (United States)

    Ramos-Zapata, José A; Orellana, Roger; Allen, Edith B

    2006-03-01

    Inoculation with arbuscular mycorrhizal (AM) fungi has often promoted increased growth of plants but very little work has been done in the tropics to evaluate the effects of inoculation on the establishment and development of seedlings in forests. Desmoncus orthacanthos Martius is a scandent palm present both in early and late succession, and consequently can be used in restoration processes. A test was conducted to determine the effect of AM on the establishment of Desmoncus orthacanthos in tropical forest in the Yucatan Peninsula, Mexico. Thirty inoculated and 30 non-inoculated seedlings were introduced in two sites of different successional age, a mature forest and an eight-year old abandoned cornfield (acahual). Survival and growth parameters were evaluated after 12 months. Leaf area and phosphorus, but not height, were greater in inoculated than non-inoculated plants in the forest but not in the acahual. However, mycorrhizae had a clear effect on plant survival in both sites, with a threefold increase in survival of inoculated compared with non-inoculated plants bassed on an odds ratio. The results suggest that inoculation will be important to increase the establishment of this commercially important palm.

  10. Decision Level Fusion of Fingerprint Minutiae Based Pseudonymous Identifiers

    NARCIS (Netherlands)

    Yang, Bian; Busch, Christoph; de Groot, Koen; Xu, H.; Veldhuis, Raymond N.J.

    2011-01-01

    In a biometric template protected authentication system, a pseudonymous identifier is the part of a protected biometric template that can be compared directly against other pseudonymous identifiers. Each compared pair of pseudonymous identifiers results in a verification decision testing whether

  11. 31 CFR 323.4 - Requests for identifiable records.

    Science.gov (United States)

    2010-07-01

    ... 31 Money and Finance: Treasury 2 2010-07-01 2010-07-01 false Requests for identifiable records... Requests for identifiable records. (a) Procedure. (1) A written request for an identifiable record relating... Debt, Chicago, IL 60605. (2) A request for an identifiable record relating to any Treasury Department...

  12. 10 CFR 784.5 - Waiver of identified inventions.

    Science.gov (United States)

    2010-01-01

    ... 10 Energy 4 2010-01-01 2010-01-01 false Waiver of identified inventions. 784.5 Section 784.5 Energy DEPARTMENT OF ENERGY PATENT WAIVER REGULATION § 784.5 Waiver of identified inventions. This... particular identified subject invention. In determining whether such a waiver of an identified invention will...

  13. Phoenix dactylifera L. spathe essential oil: Chemical composition and repellent activity against the yellow fever mosquito

    Science.gov (United States)

    Date palm, Phoenix dactylifera L. (Arecaceae), grows commonly in the Arabian Peninsula and is traditionally used to treat various diseases. The aim of the present study was to identify chemical composition of the essential oil and to investigate the repellent activity. The essential oil of P. dacty...

  14. Ajikah et al (11).cdr

    African Journals Online (AJOL)

    Timothy Ademakinwa

    species level such as Alchornea cordifolia,. Acrostichum aureum, Elaeis guineensis, Syzygium guineense and Terminalia catappa. Others were identified to the family level. These include the family: Poaceae, Adiantaceae, Asteraceae,. Arecaceae, Annonaceae, Caesalpiniaceae,. C y p e r a c e a e , C o m b r e t a c e a e ,.

  15. 76 FR 39234 - Federal Acquisition Regulation; Unique Procurement Instrument Identifier

    Science.gov (United States)

    2011-07-05

    ... Federal Acquisition Regulation; Unique Procurement Instrument Identifier AGENCIES: Department of Defense... Regulation (FAR) to standardize use of unique Procurement Instrument Identifiers (PIID) throughout the..., including the Federal Government, contractors, and the public, to potential duplicate, overlapping, or...

  16. Energy expenditure in office workers with identified health risks ...

    African Journals Online (AJOL)

    Objective. To measure the daily energy expenditure in employees previously identified as having ≥2 risk factors for chronic disease, and to identify potential risk-reducing interventions for implementation within or outside the workplace. Design. A total of 122 employees with ≥2 risk factors for chronic disease identified in ...

  17. 25 CFR 23.82 - Assistance in identifying language interpreters.

    Science.gov (United States)

    2010-04-01

    ... 25 Indians 1 2010-04-01 2010-04-01 false Assistance in identifying language interpreters. 23.82... WELFARE ACT Assistance to State Courts § 23.82 Assistance in identifying language interpreters. Upon the... shall assist in identifying language interpreters. Such requests for assistance should be sent to the...

  18. Identifying Critical Cross-Cultural School Psychology Competencies.

    Science.gov (United States)

    Rogers, Margaret R.; Lopez, Emilia C.

    2002-01-01

    Study sought to identify critical cross-cultural competencies for school psychologists. To identify the competencies, an extensive literature search about cross-cultural school psychology competencies was conducted, as well as a questionnaire to ask expert panelists. The 102 competencies identified cover 14 major domains of professional activities…

  19. 49 CFR 7.6 - Deletion of identifying detail.

    Science.gov (United States)

    2010-10-01

    ... 49 Transportation 1 2010-10-01 2010-10-01 false Deletion of identifying detail. 7.6 Section 7.6... To Be Made Public by DOT § 7.6 Deletion of identifying detail. Whenever it is determined to be necessary to prevent a clearly unwarranted invasion of personal privacy, identifying details will be deleted...

  20. 37 CFR 211.5 - Deposit of identifying material.

    Science.gov (United States)

    2010-07-01

    ... 37 Patents, Trademarks, and Copyrights 1 2010-07-01 2010-07-01 false Deposit of identifying... COPYRIGHT OFFICE AND PROCEDURES MASK WORK PROTECTION § 211.5 Deposit of identifying material. (a) General. This section prescribes rules pertaining to the deposit of identifying material for registration of a...

  1. 40 CFR 174.529 - Bacillus thuringiensis modified Cry1Ab protein as identified under OECD Unique Identifier SYN...

    Science.gov (United States)

    2010-07-01

    ... 40 Protection of Environment 23 2010-07-01 2010-07-01 false Bacillus thuringiensis modified Cry1Ab... Tolerance Exemptions § 174.529 Bacillus thuringiensis modified Cry1Ab protein as identified under OECD... Bacillus thuringiensis modified Cry1Ab protein as identified under OECD Unique Identifier SYN-IR67B-1 are...

  2. Parameter Identifiability in Statistical Machine Learning: A Review.

    Science.gov (United States)

    Ran, Zhi-Yong; Hu, Bao-Gang

    2017-05-01

    This review examines the relevance of parameter identifiability for statistical models used in machine learning. In addition to defining main concepts, we address several issues of identifiability closely related to machine learning, showing the advantages and disadvantages of state-of-the-art research and demonstrating recent progress. First, we review criteria for determining the parameter structure of models from the literature. This has three related issues: parameter identifiability, parameter redundancy, and reparameterization. Second, we review the deep influence of identifiability on various aspects of machine learning from theoretical and application viewpoints. In addition to illustrating the utility and influence of identifiability, we emphasize the interplay among identifiability theory, machine learning, mathematical statistics, information theory, optimization theory, information geometry, Riemann geometry, symbolic computation, Bayesian inference, algebraic geometry, and others. Finally, we present a new perspective together with the associated challenges.

  3. Identifying DNA Methylation Features that Underlie Prostate Cancer Disparities

    Science.gov (United States)

    2016-10-01

    Profiles Primary Aim #1: Determine if methylation profiles differ by race/ancestry Primary Aim #2: Identify ethnicity-specific markers of prostate...cancer Primary Aim #3: Identify methylation Quantitative Trait Loci In the U.S., there are pronounced racial disparities in prostate cancer incidence...vary by ethnicity and to identify ethnicity-specific methylation features of prostate cancer that could contribute the racial disparities that exist in

  4. Identifying equatorial ionospheric irregularities using in situ ion drifts

    National Research Council Canada - National Science Library

    R. A. Stoneback; R. A. Heelis

    2014-01-01

    Previous climatological investigations of ionospheric irregularity occurrence in the equatorial ionosphere have utilized in situ measurements of plasma density to identify the presence of an irregularity...

  5. Identifying the risks in LSF structures (designing, implementation ...

    African Journals Online (AJOL)

    ... optimum use of building materials and proper construction techniques. In this article, we try to study LSF structures from the design and implementation stage to the operation one and identify its risks exactly and finally offer a solution for each risk. Keywords: Lsf structures; risk management; identifying risk; classifying risk.

  6. Identifiability Results for Several Classes of Linear Compartment Models.

    Science.gov (United States)

    Meshkat, Nicolette; Sullivant, Seth; Eisenberg, Marisa

    2015-08-01

    Identifiability concerns finding which unknown parameters of a model can be estimated, uniquely or otherwise, from given input-output data. If some subset of the parameters of a model cannot be determined given input-output data, then we say the model is unidentifiable. In this work, we study linear compartment models, which are a class of biological models commonly used in pharmacokinetics, physiology, and ecology. In past work, we used commutative algebra and graph theory to identify a class of linear compartment models that we call identifiable cycle models, which are unidentifiable but have the simplest possible identifiable functions (so-called monomial cycles). Here we show how to modify identifiable cycle models by adding inputs, adding outputs, or removing leaks, in such a way that we obtain an identifiable model. We also prove a constructive result on how to combine identifiable models, each corresponding to strongly connected graphs, into a larger identifiable model. We apply these theoretical results to several real-world biological models from physiology, cell biology, and ecology.

  7. Identifying Core Concepts of Cybersecurity: Results of Two Delphi Processes

    Science.gov (United States)

    Parekh, Geet; DeLatte, David; Herman, Geoffrey L.; Oliva, Linda; Phatak, Dhananjay; Scheponik, Travis; Sherman, Alan T.

    2018-01-01

    This paper presents and analyzes results of two Delphi processes that polled cybersecurity experts to rate cybersecurity topics based on importance, difficulty, and timelessness. These ratings can be used to identify core concepts--cross-cutting ideas that connect knowledge in the discipline. The first Delphi process identified core concepts that…

  8. Identifying individual fires from satellite-derived burned area data

    CSIR Research Space (South Africa)

    Archibald, S

    2009-07-01

    Full Text Available An algorithm for identifying individual fires from the Modis burned area data product is introduced for southern Africa. This algorithm gives the date of burning, size of fire, and location of the centroid for all fires identified over 8 years...

  9. Genomic Regions Affecting Cheese Making Properties Identified in Danish Holsteins

    DEFF Research Database (Denmark)

    Gregersen, Vivi Raundahl; Bertelsen, Henriette Pasgaard; Poulsen, Nina Aagaard

    The cheese renneting process is affected by a number of factors associated to milk composition and a number of Danish Holsteins has previously been identified to have poor milk coagulation ability. Therefore, the aim of this study was to identify genomic regions affecting the technological...

  10. Identifying child abuse through text mining and machine learning

    NARCIS (Netherlands)

    Amrit, Chintan; Paauw, Tim; Aly, Robin; Lavric, Miha

    2017-01-01

    In this paper, we describe how we used text mining and analysis to identify and predict cases of child abuse in a public health institution. Such institutions in the Netherlands try to identify and prevent different kinds of abuse. A significant part of the medical data that the institutions have on

  11. An improved model for identifying influential bloggers on the web ...

    African Journals Online (AJOL)

    The benefits of achieving competitive advantages in a blog community by identify influential blogger have created several research gaps and the popularity of these services has make the problem of identifying the most influential bloggers noteworthy, since its solution can lead to major benefits for the users of this services ...

  12. Identifiability and verbal cross-referencing markers in Hungarian

    NARCIS (Netherlands)

    de Groot, C.

    2009-01-01

    Many languages employ articles as an expression device to mark identifiability. There are, however, other means to mark identifiability in languages. In this paper I show that one of the two sets of cross-referencing markers on the transitive verb in Hungarian serves this purpose, i.e., it

  13. Can "Federal Sanctuaries" be identified in Triphylia and Arkadia?

    DEFF Research Database (Denmark)

    Nielsen, Thomas Heine

    2013-01-01

    This paper discusses whether federal sanctuaries - such as are known from the Achaian and Aitolian Federations - can be identified in Triphylia and Arkadia in the Peloponnese. It is concluded that on present evidence it is not possible to identify such sanctuaries in these areas...

  14. Persistent Identifiers for Data Products: Adoption, Enhancement, and Use

    Science.gov (United States)

    Downs, R. R.; Schumacher, J.; Scialdone, J.; Hansen, M.

    2016-12-01

    Persistent identifiers offer value for science and for various science community stakeholders, such as data producers, data distributers, science article authors, scientific journal publishers, research sponsors, libraries, and affiliated institutions. However, to attain the benefits of persistent identifiers, they should be assigned to disseminated data products and included within the references reported in publications that describe the studies in which the data were used. Scientific data centers, archives, digital repositories, and other data publishers also need to determine the level of aggregation, or granularity, of data products to be assigned persistent identifiers as well as the elements to be included in the landing pages to which persistent identifiers will resolve. Similarly, policies and procedures should be clear on decisions about maintenance issues, including versioning of data products and how persistent identifiers to previous versions and new locations will be maintained. With some persistent identifiers, such as Digital Object Identifiers (DOIs), which provide capabilities to link to related identifiers of other works, decisions on the establishment of links also must be clear, including links between early versions of data products and subsequent versions, links between data products and associated documentation, and links between data products and other publications that describe the data. We describe decisions for enabling the adoption and assignment of DOIs as persistent identifiers for data products disseminated by the NASA Socioeconomic Data and Applications Center (SEDAC) along with considerations for policy decisions, testing, implementation, and enhancement. The prevalence of the adoption of DOIs for citing the use of Earth science data disseminated by SEDAC also is described to provide insight into how interdisciplinary data users have engaged in the use of DOIs within their publications along with the implications of such use.

  15. Identifying and Attributing Similar Traces with Greatest Common Factor Analysis

    Directory of Open Access Journals (Sweden)

    Fred Cohen

    2012-06-01

    Full Text Available This paper presents an algorithm for comparing large numbers of traces to each other and identifying and presenting groups of traces with similar features. It is applied to forensic analysis in which groups of similar traces are automatically identified and presented so that attribution and other related claims may be asserted, and independently confirmed or refuted. The approach of this paper is to identify an approximate algorithm that will find a large subset of greatest common factor similar groups of arbitrary factors in far less time and space than an exact algorithm using examiner-provided selection criteria for factor definition.

  16. Diverse Gram-positive bacteria identified from raw and pasteurized ...

    African Journals Online (AJOL)

    12.86%), Nocardia asteroids (5. 71 %) and Micrococcus species (5%) were the most commonly identified pathogens. Generally, 71.43% of the isolates were categorized under cocci while the remaining isolates were rods. In conclusion, this study ...

  17. Using the National Provider Identifier for Health Care...

    Data.gov (United States)

    U.S. Department of Health & Human Services — The establishment in recent years of a National Provider Identifier (NPI) offers a new method for counting and categorizing physicians and other health care...

  18. Identifying victims of violence using register-based data

    DEFF Research Database (Denmark)

    Kruse, Marie; Sørensen, Jan; Brønnum-Hansen, Henrik

    2010-01-01

    nationwide registers to identify victims of violence: The National Patient Register, the Victim Statistics, and the Causes of Death Register. We merged these data and assessed the degree of overlap between data sources. We identified a reference population by selecting all individuals in Denmark over 15....... RESULTS: In 2006, 22,000 individuals were registered as having been exposed to violence. About 70% of these victims were men. Most victims were identified from emergency room contacts and police records, and few from the Causes of Death Register. There was some overlap between the two large data sources....... We found significant differences between victims and non-victims according to socio-economic status, education, marital status, and ethnic origin, and also between victims by source of identification. CONCLUSIONS: We have identified a study population consisting of individual victims of violence...

  19. Identifying sturgeon spawning locations through back-calculations of drift

    Science.gov (United States)

    Bulliner, Edward A.; Erwin, Susannah O.; Jacobson, Robert B.; Chojnacki, Kimberly A.; George, Amy E.; Delonay, Aaron J.

    2016-01-01

    Unfavorable spawning habitat conditions have been identified as a potential limiting factor for recovery of the endangered pallid sturgeon on the Missouri River and its tributaries. After successful spawning, incubation, and hatching, sturgeon free embryos passively drift downstream and are sometimes captured by sampling crews. While spawning habitat has been identified at time of spawning through field investigations, captured pallid and shovelnose (used as a surrogate species) sturgeon free embryos in the Missouri River often do not come from genetically-known telemetered fish and may be useful to identify additional areas of spawning habitat. We developed a routing model to identify potential spawning locations for captured free embryos of known age based on channel velocity estimates. To estimate velocity we compared use of at-a-station hydraulic geometry relations to empirical estimates of velocity form a 15-year archive of hydroacoustic measurements on the Missouri River.

  20. Novel lipid constituents identified in seeds of Nigella sativa (Linn)

    Energy Technology Data Exchange (ETDEWEB)

    Mehta, B.K.; Verma, Manjul; Gupta, Meenal [Vikram University (India). School of Studies in Chemistry and Biochemistry]. E-mail: bkmehta11@yahoo.com

    2008-07-01

    Novel lipids were isolated from the unsaponifiable matter extracted from seeds of Nigella sativa Linn by using n-hexane. The new dienoate and two monoesters were the new lipids identified by spectral (IR, {sup 1}H- and {sup 13}C-NMR spectra, mass spectrum, elemental analysis) and chemical analysis. The dienoate (1) was identified as methylnonadeca-15,17-dienoate and two monoesters were identified as pentyl hexadec-12-enoate (2) and pentyl pentadec-11-enoate (3). Linoleic acid, oleic acid, {beta}-sitosterol and stigmasterol were identified as part of the lipid structures. All compounds exhibited moderate activity against Staphylococcus aureus and poor activity against shigella spp, and Klebsiella pneumoniae. (author)

  1. Identifying Islamist Parties Using Gunther and Diamond’s Typology

    Directory of Open Access Journals (Sweden)

    Raja M. Ali Saleem

    2014-08-01

    Full Text Available Recent democratization in the Muslim-majority countries (MMCs has led to a surge in interest in the Islamist (or Islamic parties. Research on these parties has, however, been plagued by the lack of agreement on identifying these parties. Analysis of various ways used to identify/define Islamist parties shows shortcomings. This article tries to resolve the conundrum by identifying these parties within a comparative framework, that is, Gunther and Diamond party typology. Two major types of Islamist parties are identified and placed within the Gunther and Diamond typology. This solution has two advantages. First, discussions on Islamist parties can now become more grounded, restricting analysts from labeling any conservative party in the MMCs as Islamist. Second, Islamist parties can be part of the general discussion on political parties in the literature, and inclination to regard them as singular or exceptional, because of their link with Islam, is discouraged.

  2. Use of morphological characters to identify cassava mosaic disease ...

    African Journals Online (AJOL)

    Use of morphological characters to identify cassava mosaic disease and cassava bacterial blight resistance. ... Both the improved cassava breeds and local germplasms in the International Institute of Tropical Agriculture, Ibadan expressed wide genetic variability in morphological characters and diseases resistance.

  3. Identifying wrong assemblies in de novo short read primary ...

    Indian Academy of Sciences (India)

    Home; Journals; Journal of Biosciences; Volume 41; Issue 3. Identifying ... Studio of Computational Biology & Bioinformatics, Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, India; Department of Biotechnology, Guru Nanak Dev University, Amritsar, Punjab, India ...

  4. Identifying program critical success factors in construction industry

    National Research Council Canada - National Science Library

    Kiani, Sarmad; Yousefi, Vahidreza; Haji Yakhchali, Siamak; Mellatdust, Aghil

    2014-01-01

    .... This paper attempts to identify program critical success factors focusing on Iran’s construction industry so that the level of relative importance of various factors could be determined for key stakeholder...

  5. Identifying salt stress-responsive transcripts from Roselle ( Hibiscus ...

    African Journals Online (AJOL)

    Hibiscus sabdariffa L.). Identifying the potentially novel transcripts responsible for salt stress tolerance in roselle will increase knowledge of the molecular mechanism underlying salt stress responses. In this study, differential display reverse ...

  6. TCGA study identifies genomic features of cervical cancer

    Science.gov (United States)

    Investigators with The Cancer Genome Atlas (TCGA) Research Network have identified novel genomic and molecular characteristics of cervical cancer that will aid in subclassification of the disease and may help target therapies that are most appropriate for each patient.

  7. Guidance for Identifying, Selecting and Evaluating Open Literature Studies

    Science.gov (United States)

    This guidance for Office of Pesticide Program staff will assist in their evaluation of open literature studies of pesticides. It also describes how we identify, select, and ensure that data we use in risk assessments is of sufficient scientific quality.

  8. Preserving Privacy by De-identifying Facial Images

    National Research Council Canada - National Science Library

    Newton, Elaine; Sweeney, Latanya; Malin, Bradley

    2003-01-01

    .... A trivial solution to de-identifying faces involves blacking out each face. This thwarts any possible face recognition, but because all facial details are obscured, the result is of limited use...

  9. Prevalent Diseases Identified in Semi-Industrial Poultry Farming in ...

    African Journals Online (AJOL)

    Urban Areas of Bamako District and of Sikasso and Segou Towns) ... The main diseases identified were of a viral nature: Gumboro Disease (15 cases), Newcastle Disease (16 cases), Marek Disease (6 cases), Mycoplasma (163 Mycoplasma ...

  10. Expression profiling identifies genes involved in emphysema severity

    Directory of Open Access Journals (Sweden)

    Bowman Rayleen V

    2009-09-01

    Full Text Available Abstract Chronic obstructive pulmonary disease (COPD is a major public health problem. The aim of this study was to identify genes involved in emphysema severity in COPD patients. Gene expression profiling was performed on total RNA extracted from non-tumor lung tissue from 30 smokers with emphysema. Class comparison analysis based on gas transfer measurement was performed to identify differentially expressed genes. Genes were then selected for technical validation by quantitative reverse transcriptase-PCR (qRT-PCR if also represented on microarray platforms used in previously published emphysema studies. Genes technically validated advanced to tests of biological replication by qRT-PCR using an independent test set of 62 lung samples. Class comparison identified 98 differentially expressed genes (p p Gene expression profiling of lung from emphysema patients identified seven candidate genes associated with emphysema severity including COL6A3, SERPINF1, ZNHIT6, NEDD4, CDKN2A, NRN1 and GSTM3.

  11. 42 CFR 401.118 - Deletion of identifying details.

    Science.gov (United States)

    2010-10-01

    ... Deletion of identifying details. When CMS publishes or otherwise makes available an opinion or order, statement of policy, or other record which relates to a private party or parties, the name or names or other...

  12. Structural parameter identifiability analysis for dynamic reaction networks

    DEFF Research Database (Denmark)

    Davidescu, Florin Paul; Jørgensen, Sten Bay

    2008-01-01

    where for a given set of measured variables it is desirable to investigate which parameters may be estimated prior to spending computational effort on the actual estimation. This contribution addresses the structural parameter identifiability problem for the typical case of reaction network models....... The proposed analysis is performed in two phases. The first phase determines the structurally identifiable reaction rates based on reaction network stoichiometry. The second phase assesses the structural parameter identifiability of the specific kinetic rate expressions using a generating series expansion...... method based on Lie derivatives. The proposed systematic two phase methodology is illustrated on a mass action based model for an enzymatically catalyzed reaction pathway network where only a limited set of variables is measured. The methodology clearly pinpoints the structurally identifiable parameters...

  13. Field potential soil variability index to identify precision agriculture opportunity

    Science.gov (United States)

    Precision agriculture (PA) technologies used for identifying and managing within-field variability are not widely used despite decades of advancement. Technological innovations in agronomic tools, such as canopy reflectance or electrical conductivity sensors, have created opportunities to achieve a ...

  14. Comparing complete and partial classification for identifying customers at risk

    NARCIS (Netherlands)

    Bloemer, J.M.M.; Brijs, T.; Swinnen, S.P.; Vanhoof, K.

    2003-01-01

    This paper evaluates complete versus partial classification for the problem of identifying customers at risk. We define customers at risk as customers reporting overall satisfaction, but these customers also possess characteristics that are strongly associated with dissatisfied customers. This

  15. Inducing and identifying artificially-induced polyploidy in bananas ...

    African Journals Online (AJOL)

    Malbut', 'Gold', 'Lidi', and 'Thong Dok Mak' through the use of colchicine and oryzalin, and that condition was identified through stomatal analysis, flow cytometry, and chromosome counts. Shoots produced in vitro were treated with colchicine at ...

  16. Identifying potentially disruptive trends by means of keyword network analysis

    OpenAIRE

    Dotsika, F.; Watkins, A.

    2017-01-01

    Identifying potentially disruptive technologies is crucial to safeguarding competitive advantage by enabling stakeholders to assign resources in a manner that increases the chances of exploiting the disruption and/or mitigating the ensuing risks. However, disruptive technologies and emergent trends within known disruptive domains are mostly identified ex-post. This paper contributes to the ex-ante prediction of emergent technologies within disruptive domains by proposing a literature-driven m...

  17. Practical identifiability analysis of a minimal cardiovascular system model.

    Science.gov (United States)

    Pironet, Antoine; Docherty, Paul D; Dauby, Pierre C; Chase, J Geoffrey; Desaive, Thomas

    2017-01-17

    Parameters of mathematical models of the cardiovascular system can be used to monitor cardiovascular state, such as total stressed blood volume status, vessel elastance and resistance. To do so, the model parameters have to be estimated from data collected at the patient's bedside. This work considers a seven-parameter model of the cardiovascular system and investigates whether these parameters can be uniquely determined using indices derived from measurements of arterial and venous pressures, and stroke volume. An error vector defined the residuals between the simulated and reference values of the seven clinically available haemodynamic indices. The sensitivity of this error vector to each model parameter was analysed, as well as the collinearity between parameters. To assess practical identifiability of the model parameters, profile-likelihood curves were constructed for each parameter. Four of the seven model parameters were found to be practically identifiable from the selected data. The remaining three parameters were practically non-identifiable. Among these non-identifiable parameters, one could be decreased as much as possible. The other two non-identifiable parameters were inversely correlated, which prevented their precise estimation. This work presented the practical identifiability analysis of a seven-parameter cardiovascular system model, from limited clinical data. The analysis showed that three of the seven parameters were practically non-identifiable, thus limiting the use of the model as a monitoring tool. Slight changes in the time-varying function modeling cardiac contraction and use of larger values for the reference range of venous pressure made the model fully practically identifiable. Copyright © 2017. Published by Elsevier B.V.

  18. Identifying Determinants of PARP Inhibitor Sensitivity in Ovarian Cancer

    Science.gov (United States)

    2016-10-01

    deficient in homologous recombination (HR) DNA repair, such as those lacking functional BRCA1 are highly sensitive to poly(ADP-ribose) polymerase (PARP...Identify genetic alterations essential for PARP inhibitor resistance; 3: Determine the ability of identified genetic aberrations to serve as predictive...INTRODUCTION: Cells that are deficient in homologous recombination (HR) DNA repair, such as those lacking functional BRCA1 are highly sensitive to poly

  19. Identifying and prioritising services in European terrestrial and freshwater ecosystems

    OpenAIRE

    Harrison, P. A.; Vandewalle, M; Sykes, M.T.; Berry, P. M. (Peter M.); Bugter, R.J.F.; Bello,; Feld, C.K.; Grandin, U.; Harrington, R.; Haslett, J.R.; Jongman, R. H. G.; Luck, G.W.; Martins da Silva, P.; Moora, M.; Settele, J.

    2010-01-01

    Ecosystems are multifunctional and provide humanity with a broad array of vital services. Effective management of services requires an improved evidence base, identifying the role of ecosystems in delivering multiple services, which can assist policy-makers in maintaining them. Here, information from the literature and scientific experts was used to systematically document the importance of services and identify trends in their use and status over time for the main terrestrial and freshwater ...

  20. Identifying Determinants of PARP Inhibitor Sensitivity in Ovarian Cancer

    Science.gov (United States)

    2015-10-01

    Maryland 21702-5012 Approved for Public Release; Distribution Unlimited Identifying Determinants of PARP Inhibitor Sensitivity in Ovarian Cancer October...NOTES 14. ABSTRACT 15. SUBJECT TERMS Ovarian cancer , BRCA1, RAD51, PARP inhibitors, platinum, biomarkers, drug resistance 16. SECURITY CLASSIFICATION...Identifying Determinants of PARP Inhibitor Sensitivity in Ovarian Cancer Form Approved OMB No. 0704-0188 Public reporting burden for this collection of

  1. A Note on the Identifiability of Generalized Linear Mixed Models

    DEFF Research Database (Denmark)

    Labouriau, Rodrigo

    2014-01-01

    I present here a simple proof that, under general regularity conditions, the standard parametrization of generalized linear mixed model is identifiable. The proof is based on the assumptions of generalized linear mixed models on the first and second order moments and some general mild regularity...... conditions, and, therefore, is extensible to quasi-likelihood based generalized linear models. In particular, binomial and Poisson mixed models with dispersion parameter are identifiable when equipped with the standard parametrization...

  2. SLDR: a computational technique to identify novel genetic regulatory relationships

    OpenAIRE

    Yue, Zongliang; Wan, Ping; Huang, Hui; Xie, Zhan; Chen, Jake Y

    2014-01-01

    We developed a new computational technique called Step-Level Differential Response (SLDR) to identify genetic regulatory relationships. Our technique takes advantages of functional genomics data for the same species under different perturbation conditions, therefore complementary to current popular computational techniques. It can particularly identify "rare" activation/inhibition relationship events that can be difficult to find in experimental results. In SLDR, we model each candidate targe...

  3. False discovery rate control for identifying simultaneous signals

    OpenAIRE

    Zhao, Sihai Dave

    2015-01-01

    It is frequently of interest to jointly analyze multiple sequences of multiple tests in order to identify simultaneous signals, defined as features tested in multiple independent studies whose test statistics are non-null in each. For example, researchers often wish to discover genetic variants that are significantly associated with multiple traits. This paper proposes a false discovery rate control procedure for identifying simultaneous signals in two studies. Error control is difficult due ...

  4. Using Click Chemistry to Identify Potential Drug Targets in Plasmodium

    Science.gov (United States)

    2016-06-01

    Plasmodium. 67 68 3 Introduction 69 70 Malaria infection begins with the infection by Plasmodium ‘sporozoites’ of the liver. After 71 asexual...the Plasmodium mammalian cycle. Identifying parasite proteins that are required for liver infection can lead to novel drugs against malaria . For the...sporozoite infection and whose inhibition could be exploited to prevent the first step of a malaria infection. Thus, we have identified two potential

  5. Improving applicant selection: identifying qualities of the unsuccessful otolaryngology resident.

    Science.gov (United States)

    Badran, Karam W; Kelley, Kanwar; Conderman, Christian; Mahboubi, Hossein; Armstrong, William B; Bhandarkar, Naveen D

    2015-04-01

    To identify the prevalence and management of problematic residents. Additionally, we hope to identify the factors associated with successful remediation of unsuccessful otolaryngology residents. Self-reported Internet and paper-based survey. An anonymous survey was distributed to 152 current and former program directors (PDs) in 2012. The factors associated with unsuccessful otolaryngology residents and those associated with the successful remediation of problematic residents were investigated. An unsuccessful resident is defined as one who quit or was removed from the program for any reason, or one whose actions resulted in criminal action or citation against their medical license after graduation from residency. Remediation is defined as an individualized program implemented to correct documented weaknesses. The overall response rate was 26% (40 PDs). Seventy-three unsuccessful or problematic residents were identified. Sixty-six problematic or unsuccessful residents were identified during residency, with 58 of 66 (88%) undergoing remediation. Thirty-one (47%) residents did not graduate. The most commonly identified factors of an unsuccessful resident were: change in specialty (21.5%), interpersonal and communication skills with health professionals (13.9%), and clinical judgment (10.1%). Characteristics of those residents who underwent successful remediation include: poor performance on in-training examination (17%, P otolaryngology PDs in this sample identified at least one unsuccessful resident. Improved methods of applicant screening may assist in optimizing otolaryngology resident selection. © 2014 The American Laryngological, Rhinological and Otological Society, Inc.

  6. Identifying Cancer Driver Genes Using Replication-Incompetent Retroviral Vectors

    Directory of Open Access Journals (Sweden)

    Victor M. Bii

    2016-10-01

    Full Text Available Identifying novel genes that drive tumor metastasis and drug resistance has significant potential to improve patient outcomes. High-throughput sequencing approaches have identified cancer genes, but distinguishing driver genes from passengers remains challenging. Insertional mutagenesis screens using replication-incompetent retroviral vectors have emerged as a powerful tool to identify cancer genes. Unlike replicating retroviruses and transposons, replication-incompetent retroviral vectors lack additional mutagenesis events that can complicate the identification of driver mutations from passenger mutations. They can also be used for almost any human cancer due to the broad tropism of the vectors. Replication-incompetent retroviral vectors have the ability to dysregulate nearby cancer genes via several mechanisms including enhancer-mediated activation of gene promoters. The integrated provirus acts as a unique molecular tag for nearby candidate driver genes which can be rapidly identified using well established methods that utilize next generation sequencing and bioinformatics programs. Recently, retroviral vector screens have been used to efficiently identify candidate driver genes in prostate, breast, liver and pancreatic cancers. Validated driver genes can be potential therapeutic targets and biomarkers. In this review, we describe the emergence of retroviral insertional mutagenesis screens using replication-incompetent retroviral vectors as a novel tool to identify cancer driver genes in different cancer types.

  7. Identifying risk: a comparison of risk between heterosexual-identifying bisexual men and other bisexual men in Vientiane, Laos.

    Science.gov (United States)

    Bowring, Anna; van Gemert, C; Vongsaiya, K; Hughes, C; Sihavong, A; Phimphachanh, C; Chanlivong, N; Toole, M; Hellard, M

    2014-04-01

    Men who have sex with men are a priority population for HIV control in Laos, but encompass men diverse in sexual orientation, gender identification, and behavior. Behaviorally bisexual men and their sexual partners were recruited in Vientiane, Laos, in 2010 using modified snowball sampling. Heterosexual-identifying bisexual men identified as exclusively/predominantly heterosexual and other bisexual men identified as bisexual or predominantly/exclusively homosexual. Sixty (68%) heterosexual-identifying and 38 (32%) other bisexual men were recruited; the median number of sex partners in the past year was eight and seven, respectively. Consistent condom use was low with regular (7%) and casual (35%) partners and did not differ by identity. More heterosexual-identifying (53%) than other bisexual (29%) men reported weekly alcohol consumption. Twelve (20%) heterosexual-identifying and 15 (54%) other bisexual men correctly answered all HIV-knowledge questions. High-risk behaviors for STI and HIV transmission were common. Targeted HIV prevention initiatives are needed, particularly to reach heterosexual-identifying bisexual men.

  8. Integrating subpathway analysis to identify candidate agents for hepatocellular carcinoma

    Directory of Open Access Journals (Sweden)

    Wang J

    2016-03-01

    Full Text Available Jiye Wang,1 Mi Li,2 Yun Wang,3 Xiaoping Liu4 1The Criminal Science and Technology Department, Zhejiang Police College, Hangzhou, Zhejiang Province, 2Department of Nursing, Shandong College of Traditional Chinese Medicine College, Yantai, Shandong Province, 3Office Department of Gastroenterology, The First Affiliated Hospital of Xi’an Jiao Tong University, Xi’an, Shanxi Province, 4Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Shanghai, People’s Republic of China Abstract: Hepatocellular carcinoma (HCC is the second most common cause of cancer-associated death worldwide, characterized by a high invasiveness and resistance to normal anticancer treatments. The need to develop new therapeutic agents for HCC is urgent. Here, we developed a bioinformatics method to identify potential novel drugs for HCC by integrating HCC-related and drug-affected subpathways. By using the RNA-seq data from the TCGA (The Cancer Genome Atlas database, we first identified 1,763 differentially expressed genes between HCC and normal samples. Next, we identified 104 significant HCC-related subpathways. We also identified the subpathways associated with small molecular drugs in the CMap database. Finally, by integrating HCC-related and drug-affected subpathways, we identified 40 novel small molecular drugs capable of targeting these HCC-involved subpathways. In addition to previously reported agents (ie, calmidazolium, our method also identified potentially novel agents for targeting HCC. We experimentally verified that one of these novel agents, prenylamine, induced HCC cell apoptosis using 3-(4,5-dimethylthiazol-2-yl-2,5-diphenyltetrazolium bromide, an acridine orange/ethidium bromide stain, and electron microscopy. In addition, we found that prenylamine not only affected several classic apoptosis-related proteins, including Bax, Bcl-2, and cytochrome c, but also increased caspase-3 activity. These candidate small molecular drugs

  9. On the Identifiability of the Post-Nonlinear Causal Model

    CERN Document Server

    Zhang, Kun

    2012-01-01

    By taking into account the nonlinear effect of the cause, the inner noise effect, and the measurement distortion effect in the observed variables, the post-nonlinear (PNL) causal model has demonstrated its excellent performance in distinguishing the cause from effect. However, its identifiability has not been properly addressed, and how to apply it in the case of more than two variables is also a problem. In this paper, we conduct a systematic investigation on its identifiability in the two-variable case. We show that this model is identifiable in most cases; by enumerating all possible situations in which the model is not identifiable, we provide sufficient conditions for its identifiability. Simulations are given to support the theoretical results. Moreover, in the case of more than two variables, we show that the whole causal structure can be found by applying the PNL causal model to each structure in the Markov equivalent class and testing if the disturbance is independent of the direct causes for each va...

  10. Structural identifiability analysis of a cardiovascular system model.

    Science.gov (United States)

    Pironet, Antoine; Dauby, Pierre C; Chase, J Geoffrey; Docherty, Paul D; Revie, James A; Desaive, Thomas

    2016-05-01

    The six-chamber cardiovascular system model of Burkhoff and Tyberg has been used in several theoretical and experimental studies. However, this cardiovascular system model (and others derived from it) are not identifiable from any output set. In this work, two such cases of structural non-identifiability are first presented. These cases occur when the model output set only contains a single type of information (pressure or volume). A specific output set is thus chosen, mixing pressure and volume information and containing only a limited number of clinically available measurements. Then, by manipulating the model equations involving these outputs, it is demonstrated that the six-chamber cardiovascular system model is structurally globally identifiable. A further simplification is made, assuming known cardiac valve resistances. Because of the poor practical identifiability of these four parameters, this assumption is usual. Under this hypothesis, the six-chamber cardiovascular system model is structurally identifiable from an even smaller dataset. As a consequence, parameter values computed from limited but well-chosen datasets are theoretically unique. This means that the parameter identification procedure can safely be performed on the model from such a well-chosen dataset. Thus, the model may be considered suitable for use in diagnosis. Copyright © 2016 IPEM. Published by Elsevier Ltd. All rights reserved.

  11. Laboratory evaluation of the IriScan prototype biometric identifier

    Energy Technology Data Exchange (ETDEWEB)

    Bouchier, F.; Ahrens, J.S.; Wells, G.

    1996-04-01

    One thing that all access control applications have in common is the need to identify those individuals authorized to gain access to an area. Traditionally, the identification is based on something that person possesses, such as a key or badge, or something they know, such as a PIN or password. Biometric identifiers make their decisions based on the physiological or behavioral characteristics of individuals. The potential of biometrics devices to positively identify individuals has made them attractive for use in access control and computer security applications. However, no systems perform perfectly, so it is important to understand what a biometric device`s performance is under real world conditions before deciding to implement one in an access control system. This paper will describe the evaluation of a prototype biometric identifier provided by IriScan Incorporated. This identifier was developed to recognize individual human beings based on the distinctive visual characteristics of the irises of their eyes. The main goal of the evaluation was to determine whether the system has potential as an access control device within the Department of Energy (DOE). The primary interest was an estimate of the accuracy of the system in terms of false accept and false reject rates. Data was also collected to estimate throughput time and user acceptability. The performance of the system during the test will be discussed. Lessons learned during the test which may aid in further testing and simplify implementation of a production system will also be discussed.

  12. Identifying the early post-HIV antibody seroconversion period.

    Science.gov (United States)

    Hecht, Frederick M; Wellman, Robert; Busch, Michael P; Pilcher, Christopher D; Norris, Philip J; Margolick, Joseph B; Collier, Ann C; Little, Susan J; Markowitz, Martin; Routy, Jean-Pierre; Holte, Sarah

    2011-08-15

    Identifying persons with recent human immunodeficiency virus (HIV) antibody seroconversion is useful for treatment, research, and prevention, but the sensitivity and specificity of tests for this purpose are uncertain. We used longitudinal specimens panels from 155 persons identified prior to HIV seroconversion to assess antibody-based methods for classifying persons as within 30, 60, or 90 days of seroconversion, including 2 incidence assays, a less-sensitive (LS) enzyme immunoassay (EIA), and the BED assay. Sensitivity and specificity, respectively, for identifying persons within 30 days of seroconversion were: 34%-57% and 98%-100% for 2 standard EIAs (employing a signal-to-cutoff ≤4.0; ≥1.0 defines HIV positive), 84% and 73% for the LS-EIA (≤0.2 cutoff), 88% and 72% for the BED (≤0.2 cutoff), and 43%-58% and 98% (≤3 bands) for 2 Western blot (WB) assays. By area under the receiver operator curves, the best test for identifying persons within 30 days of seroconversion was the number of bands on the Bio-Rad WB (0.90); within 60 days, the LS-EIA and BED (both 0.85); and for persons within 90 days the BED (0.86). Standard EIAs, Western blots, and HIV incidence assays provide useful information for identifying persons 30 to 90 days after seroconversion.

  13. Fungi identify the geographic origin of dust samples.

    Directory of Open Access Journals (Sweden)

    Neal S Grantham

    Full Text Available There is a long history of archaeologists and forensic scientists using pollen found in a dust sample to identify its geographic origin or history. Such palynological approaches have important limitations as they require time-consuming identification of pollen grains, a priori knowledge of plant species distributions, and a sufficient diversity of pollen types to permit spatial or temporal identification. We demonstrate an alternative approach based on DNA sequencing analyses of the fungal diversity found in dust samples. Using nearly 1,000 dust samples collected from across the continental U.S., our analyses identify up to 40,000 fungal taxa from these samples, many of which exhibit a high degree of geographic endemism. We develop a statistical learning algorithm via discriminant analysis that exploits this geographic endemicity in the fungal diversity to correctly identify samples to within a few hundred kilometers of their geographic origin with high probability. In addition, our statistical approach provides a measure of certainty for each prediction, in contrast with current palynology methods that are almost always based on expert opinion and devoid of statistical inference. Fungal taxa found in dust samples can therefore be used to identify the origin of that dust and, more importantly, we can quantify our degree of certainty that a sample originated in a particular place. This work opens up a new approach to forensic biology that could be used by scientists to identify the origin of dust or soil samples found on objects, clothing, or archaeological artifacts.

  14. Copy number variations (CNVs identified in Korean individuals

    Directory of Open Access Journals (Sweden)

    Kim Yong

    2008-10-01

    Full Text Available Abstract Background Copy number variations (CNVs are deletions, insertions, duplications, and more complex variations ranging from 1 kb to sub-microscopic sizes. Recent advances in array technologies have enabled researchers to identify a number of CNVs from normal individuals. However, the identification of new CNVs has not yet reached saturation, and more CNVs from diverse populations remain to be discovered. Results We identified 65 copy number variation regions (CNVRs in 116 normal Korean individuals by analyzing Affymetrix 250 K Nsp whole-genome SNP data. Ten of these CNVRs were novel and not present in the Database of Genomic Variants (DGV. To increase the specificity of CNV detection, three algorithms, CNAG, dChip and GEMCA, were applied to the data set, and only those regions recognized at least by two algorithms were identified as CNVs. Most CNVRs identified in the Korean population were rare ( Conclusion CNVs are recently-recognized structural variations among individuals, and more CNVs need to be identified from diverse populations. Until now, CNVs from Asian populations have been studied less than those from European or American populations. In this regard, our study of CNVs from the Korean population will contribute to the full cataloguing of structural variation among diverse human populations.

  15. SitesIdentify: a protein functional site prediction tool

    Directory of Open Access Journals (Sweden)

    Doig Andrew J

    2009-11-01

    Full Text Available Abstract Background The rate of protein structures being deposited in the Protein Data Bank surpasses the capacity to experimentally characterise them and therefore computational methods to analyse these structures have become increasingly important. Identifying the region of the protein most likely to be involved in function is useful in order to gain information about its potential role. There are many available approaches to predict functional site, but many are not made available via a publicly-accessible application. Results Here we present a functional site prediction tool (SitesIdentify, based on combining sequence conservation information with geometry-based cleft identification, that is freely available via a web-server. We have shown that SitesIdentify compares favourably to other functional site prediction tools in a comparison of seven methods on a non-redundant set of 237 enzymes with annotated active sites. Conclusion SitesIdentify is able to produce comparable accuracy in predicting functional sites to its closest available counterpart, but in addition achieves improved accuracy for proteins with few characterised homologues. SitesIdentify is available via a webserver at http://www.manchester.ac.uk/bioinformatics/sitesidentify/

  16. Parameter identifiability of power-law biochemical system models.

    Science.gov (United States)

    Srinath, Sridharan; Gunawan, Rudiyanto

    2010-09-01

    Mathematical modeling has become an integral component in biotechnology, in which these models are frequently used to design and optimize bioprocesses. Canonical models, like power-laws within the Biochemical Systems Theory, offer numerous mathematical and numerical advantages, including built-in flexibility to simulate general nonlinear behavior. The construction of such models relies on the estimation of unknown case-specific model parameters by way of experimental data fitting, also known as inverse modeling. Despite the large number of publications on this topic, this task remains the bottleneck in canonical modeling of biochemical systems. The focus of this paper concerns with the question of identifiability of power-law models from dynamic data, that is, whether the parameter values can be uniquely and accurately identified from time-series data. Existing and newly developed parameter identifiability methods were applied to two power-law models of biochemical systems, and the results pointed to the lack of parametric identifiability as the root cause of the difficulty faced in the inverse modeling. Despite the focus on power-law models, the analyses and conclusions are extendable to other canonical models, and the issue of parameter identifiability is expected to be a common problem in biochemical system modeling. Copyright 2010 Elsevier B.V. All rights reserved.

  17. Benchmarking in Identifying Priority Directions of Development of Telecommunication Operators

    Directory of Open Access Journals (Sweden)

    Zaharchenko Lolita A.

    2013-12-01

    Full Text Available The article analyses evolution of development and possibilities of application of benchmarking in the telecommunication sphere. It studies essence of benchmarking on the basis of generalisation of approaches of different scientists to definition of this notion. In order to improve activity of telecommunication operators, the article identifies the benchmarking technology and main factors, that determine success of the operator in the modern market economy, and the mechanism of benchmarking and component stages of carrying out benchmarking by a telecommunication operator. It analyses the telecommunication market and identifies dynamics of its development and tendencies of change of the composition of telecommunication operators and providers. Having generalised the existing experience of benchmarking application, the article identifies main types of benchmarking of telecommunication operators by the following features: by the level of conduct of (branch, inter-branch and international benchmarking; by relation to participation in the conduct (competitive and joint; and with respect to the enterprise environment (internal and external.

  18. A Study of Scientometric Methods to Identify Emerging Technologies

    Energy Technology Data Exchange (ETDEWEB)

    Abercrombie, Robert K [ORNL; Udoeyop, Akaninyene W [ORNL

    2011-01-01

    This work examines a scientometric model that tracks the emergence of an identified technology from initial discovery (via original scientific and conference literature), through critical discoveries (via original scientific, conference literature and patents), transitioning through Technology Readiness Levels (TRLs) and ultimately on to commercial application. During the period of innovation and technology transfer, the impact of scholarly works, patents and on-line web news sources are identified. As trends develop, currency of citations, collaboration indicators, and on-line news patterns are identified. The combinations of four distinct and separate searchable on-line networked sources (i.e., scholarly publications and citation, worldwide patents, news archives, and on-line mapping networks) are assembled to become one collective network (a dataset for analysis of relations). This established network becomes the basis from which to quickly analyze the temporal flow of activity (searchable events) for the example subject domain we investigated.

  19. Loneliness, immigration background and self-identified ethnicity

    DEFF Research Database (Denmark)

    Madsen, Katrine Rich; Damsgaard, Mogens Trab; Jervelund, Signe Smith

    2016-01-01

    challenges related to acculturation in the new country. These experiences may induce feelings of loneliness. Research on ethnic and migrant disparities in loneliness among adolescents is limited and inconsistent. The purpose of this study was to examine how adolescents’ immigration background and self......-identified ethnicity are associated, independently and combined, with loneliness. We used data from the Danish 2010 Health Behaviour in School-aged Children survey which included a representative sample of 3083 13- and 15-year-olds. The results suggest that immigrants but not descendants of immigrants have...... an increased risk of loneliness compared to adolescents with a Danish origin. The results also suggest that adolescents’ self-identified ethnicity plays an essential role but differently for immigrants and descendants: identifying with the Danish majority was protective against loneliness among immigrants...

  20. Identifying the Persons in Charge of an Organizational Change Process

    Directory of Open Access Journals (Sweden)

    Daniela BRĂDUŢANU

    2016-03-01

    Full Text Available The purpose of this research is to identify if there is a correlation between the change agent and resistance in order to change and to identify the persons who are in charge of conducting a change process within the Romanian organizations. To answer these two questions we have researched the current literature and carried out a research in the field, and discovered that even if in many cases the change agent can represent a force generating resistance to change within an organization, it does not apply to the analyzed sample. Also, we have identified the main categories of people who are in charge of implementing a new change and the results differ, depending on the size of the organization. This information is valuable for managers, researchers and practitioners.

  1. Drosophila Cancer Models Identify Functional Differences between Ret Fusions

    Directory of Open Access Journals (Sweden)

    Sarah Levinson

    2016-09-01

    Full Text Available We generated and compared Drosophila models of RET fusions CCDC6-RET and NCOA4-RET. Both RET fusions directed cells to migrate, delaminate, and undergo EMT, and both resulted in lethality when broadly expressed. In all phenotypes examined, NCOA4-RET was more severe than CCDC6-RET, mirroring their effects on patients. A functional screen against the Drosophila kinome and a library of cancer drugs found that CCDC6-RET and NCOA4-RET acted through different signaling networks and displayed distinct drug sensitivities. Combining data from the kinome and drug screens identified the WEE1 inhibitor AZD1775 plus the multi-kinase inhibitor sorafenib as a synergistic drug combination that is specific for NCOA4-RET. Our work emphasizes the importance of identifying and tailoring a patient’s treatment to their specific RET fusion isoform and identifies a multi-targeted therapy that may prove effective against tumors containing the NCOA4-RET fusion.

  2. Agreement among response to intervention criteria for identifying responder status.

    Science.gov (United States)

    Barth, Amy E; Stuebing, Karla K; Anthony, Jason L; Denton, Carolyn A; Mathes, Patricia G; Fletcher, Jack M; Francis, David J

    2008-09-01

    In order to better understand the extent to which operationalizations of response to intervention (RTI) overlap and agree in identifying adequate and inadequate responders, an existing database of 399 first grade students was evaluated in relation to cut-points, measures, and methods frequently cited for the identification of inadequate responders to instruction. A series of 543 2x2 measures of association (808 total comparisons) were computed to address the agreement of different operationalizations of RTI. The results indicate that agreement is generally poor and that different methods tend to identify different students as inadequate responders, although agreement for identifying adequate responders is higher. Approaches to the assessment of responder status must use multiple criteria and avoid formulaic decision making.

  3. A statistical approach to identify candidate cues for nestmate recognition

    DEFF Research Database (Denmark)

    van Zweden, Jelle; Pontieri, Luigi; Pedersen, Jes Søe

    2014-01-01

    cuticular hydrocarbons (CHCs), identifying theexact cues for specific species has remained a daunting task, partly due to the sheernumber of odor compounds. Perhaps unsurprisingly, one of the few species wherethe recognition cues have been identified, Formica exsecta, has only around ten majorhydrocarbons...... a biologically meaningful way to quantify the chemical distancesbetween NMs, allowing for within-colony variation in recognition cues. Next,we ask whichsubset of hydrocarbons most likely represents the cues that the ants use for nestmaterecognition, which shows less clear results for C. aethiops and M. pharaonis...... than forF. exsecta, possibly due to less than ideal datasets. Nonetheless, some compound setsperformed better than others, showing that this approach can be used to identify candidatecompounds to be tested in bio-assays, and eventually crack the sophisticated code thatgoverns nestmate recognition....

  4. Identifying splicing regulatory elements with de Bruijn graphs.

    Science.gov (United States)

    Badr, Eman; Heath, Lenwood S

    2014-12-01

    Splicing regulatory elements (SREs) are short, degenerate sequences on pre-mRNA molecules that enhance or inhibit the splicing process via the binding of splicing factors, proteins that regulate the functioning of the spliceosome. Existing methods for identifying SREs in a genome are either experimental or computational. Here, we propose a formalism based on de Bruijn graphs that combines genomic structure, word count enrichment analysis, and experimental evidence to identify SREs found in exons. In our approach, SREs are not restricted to a fixed length (i.e., k-mers, for a fixed k). As a result, we identify 2001 putative exonic enhancers and 3080 putative exonic silencers for human genes, with lengths varying from 6 to 15 nucleotides. Many of the predicted SREs overlap with experimentally verified binding sites. Our model provides a novel method to predict variable length putative regulatory elements computationally for further experimental investigation.

  5. Deep sequencing to identify the causes of viral encephalitis.

    Directory of Open Access Journals (Sweden)

    Benjamin K Chan

    Full Text Available Deep sequencing allows for a rapid, accurate characterization of microbial DNA and RNA sequences in many types of samples. Deep sequencing (also called next generation sequencing or NGS is being developed to assist with the diagnosis of a wide variety of infectious diseases. In this study, seven frozen brain samples from deceased subjects with recent encephalitis were investigated. RNA from each sample was extracted, randomly reverse transcribed and sequenced. The sequence analysis was performed in a blinded fashion and confirmed with pathogen-specific PCR. This analysis successfully identified measles virus sequences in two brain samples and herpes simplex virus type-1 sequences in three brain samples. No pathogen was identified in the other two brain specimens. These results were concordant with pathogen-specific PCR and partially concordant with prior neuropathological examinations, demonstrating that deep sequencing can accurately identify viral infections in frozen brain tissue.

  6. Aerokey II: a flexible key for identifying clinical Aeromonas species.

    Science.gov (United States)

    Carnahan, A M; Behram, S; Joseph, S W

    1991-12-01

    A small subset (n = 18) of highly discriminatory tests was derived from the feature frequency of 50 tests used in the study of 167 predominantly clinical Aeromonas strains. Seven of these eighteen tests were used to construct a flexible, dichotomous key, Aerokey II, for identifying clinical aerontonads: esculin hydrolysis, gas from glucose, acid from arabinose, indole production, acid from sucrose, Voges-Proskauer reaction, and resistance to cephalothin (30 micrograms). This schema was initially evaluated in a single-blind trial of 60 well-characterized clinical Aeromonas hydrophila (n = 21), A. caviae (n = 19), and A. veronii bv. sobria (n = 20) strains from an independent laboratory. Of the 60 strains tested, 58 (97%) were accurately identified to the species level. Aerokey II was further evaluated with 18 additional American Type Culture Collection and reference strains representing the more recently proposed taxa A. veronii bv. veronii, A. schubertii, A. jandaei, and A. trota and accurately identified all of these strains.

  7. Family and academic performance: identifying high school student profiles

    Directory of Open Access Journals (Sweden)

    Alicia Aleli Chaparro Caso López

    2016-01-01

    Full Text Available The objective of this study was to identify profiles of high school students, based on variables related to academic performance, socioeconomic status, cultural capital and family organization. A total of 21,724 high school students, from the five municipalities of the state of Baja California, took part. A K-means cluster analysis was performed to identify the profiles. The analyses identified two clearly-defined clusters: Cluster 1 grouped together students with high academic performance and who achieved higher scores for socioeconomic status, cultural capital and family involvement, whereas Cluster 2 brought together students with low academic achievement, and who also obtained lower scores for socioeconomic status and cultural capital, and had less family involvement. It is concluded that the family variables analyzed form student profiles that can be related to academic achievement.

  8. Identifying suicidal behavior among adolescents using administrative claims data.

    Science.gov (United States)

    Callahan, S Todd; Fuchs, D Catherine; Shelton, Richard C; Balmer, Leanne S; Dudley, Judith A; Gideon, Patricia S; Deranieri, Michelle M; Stratton, Shannon M; Williams, Candice L; Ray, Wayne A; Cooper, William O

    2013-07-01

    To assess the safety of psychotropic medication use in children and adolescents, it is critical to be able to identify suicidal behaviors from medical claims data and distinguish them from other injuries. The purpose of this study was to develop an algorithm using administrative claims data to identify medically treated suicidal behavior in a cohort of children and adolescents. The cohort included 80,183 youth (6-18 years) enrolled in Tennessee's Medicaid program from 1995-2006 who were prescribed antidepressants. Potential episodes of suicidal behavior were identified using external cause-of-injury codes (E-codes) and ICD-9-CM codes corresponding to the potential mechanisms of or injuries resulting from suicidal behavior. For each identified episode, medical records were reviewed to determine if the injury was self-inflicted and if intent to die was explicitly stated or could be inferred. Medical records were reviewed for 2676 episodes of potential self-harm identified through claims data. Among 1162 episodes that were classified as suicidal behavior, 1117 (96%) had a claim for suicide and self-inflicted injury, poisoning by drugs, or both. The positive predictive value of code groups to predict suicidal behavior ranged from 0-88% and improved when there was a concomitant hospitalization but with the limitation of excluding some episodes of confirmed suicidal behavior. Nearly all episodes of confirmed suicidal behavior in this cohort of youth included an ICD-9-CM code for suicide or poisoning by drugs. An algorithm combining these ICD-9-CM codes and hospital stay greatly improved the positive predictive value for identifying medically treated suicidal behavior. Copyright © 2013 John Wiley & Sons, Ltd.

  9. Could cognitive vulnerability identify high-risk subjects for schizophrenia?

    Science.gov (United States)

    Sarfati, Yves; Hardy-Baylé, Marie-Christine

    2002-12-08

    This review puts into questions the possible role of cognitive vulnerability markers in prediction and prevention of schizophrenia. Until recently, none of the identified cognitive anomalies has been proved to be definitive. However, as new promising candidates are emerging (DS-CPT, CPT-IP, P suppression, Saccadic Eye Movements), the predictive value of these trait-type anomalies may be criticized regarding four issues, which are discussed: technical, metrological, theoretical, and clinical. As things stand, the existence of a cognitive vulnerability marker, which testify to a permanent pathological trait, does not constitute a sufficient factor to identify and treat subjects who are at risk for schizophrenia. Copyright 2002 Wiley-Liss, Inc.

  10. Clinical staff nurse leadership: Identifying gaps in competency development.

    Science.gov (United States)

    Franks-Meeks, Sherron

    2017-07-26

    To date, there has been no development of a complete, applicable inventory of clinical staff nurse (CSN) leadership role competencies through a valid and reliable methodology. Further, the CSN has not been invited to engage in the identification, definition, or development of their own leadership competencies. Compare existing leadership competencies to identify and highlight gaps in clinical staff nurse leadership role competency development and validation. Literature review. The CSN has not participated in the development of CSN leadership role competencies, nor have the currently identified CSN leadership role competencies been scientifically validated through research. Finally, CSN leadership role competencies are incomplete and do not reflect the CSN perspective. © 2017 Wiley Periodicals, Inc.

  11. A specific polymerase chain reaction method to identify Stenotrophomonas maltophilia

    Directory of Open Access Journals (Sweden)

    Stephanie Wagner Gallo

    2013-05-01

    Full Text Available Stenotrophomonas maltophilia is a multidrug-resistant nosocomial pathogen that is difficult to identify unequivocally using current methods. Accordingly, because the presence of this microorganism in a patient may directly determine the antimicrobial treatment, conventional polymerase chain reaction (PCR and real-time PCR assays targeting 23S rRNA were developed for the specific identification of S. maltophilia. The PCR protocol showed high specificity when tested against other species of Stenotrophomonas, non-fermentative Gram-negative bacilli and 100 clinical isolates of S. maltophilia previously identified using the Vitek system.

  12. The Patent Literature As A Shortcut To Identify Knowledge Suppliers

    DEFF Research Database (Denmark)

    Søberg, Peder Veng

    The present paper explores characteristics of valuable patents that have been subject to litigation which resulted in some of the largest fines to patent infringers reported in history. The valuable patents are compared with less valuable patents in order to identify new methods of evaluating...... patents which decreases the time span between a patent is filed and its value can be evaluated when searching the patent literature. A potential benefit thereof could be that the patent literature could become relevant in order to identify potential knowledge suppliers....

  13. An automatic and effective approach in identifying tower cranes

    Science.gov (United States)

    Yu, Bo; Niu, Zheng; Wang, Li; Liu, Yaqi

    2012-04-01

    A method which can distinguish tower cranes from other objects in an image is proposed in this paper. It synthesizes the advantages of both morphological theory and geometrical characters to identify tower cranes accurately. The algorithm uses morphological theory to remove noise and segment images. Moreover, geometrical characters are adopted to extract tower cranes with thresholds. To test the algorithm's practical applicability, we apply it to another image to check the result. The experiments show that the approach can locate the position of tower cranes precisely and calculate the number of cranes at 100% accuracy rate. It can be applied to identifying tower cranes in small regions.

  14. Using PICOS workshops to identify and eliminate waste.

    Science.gov (United States)

    O'Malley, S

    1997-05-01

    "Any human activity that absorbs resources but creates no value," says Maureen Bisognano of the Institute for Healthcare Improvement, "is waste." At war with waste--in healthcare as well as in the automobile industry--is General Motors Corp. The battle plan is an accelerated change process known as PICOS. In a four-step, three-and-one-half-day workshop, GM facilitators work with teams from the healthcare organization to identify waste and plan ways to get rid of it. See if you can identify, within your organization, the seven types of waste they attack--then read about systems that have used PICOS successfully in battle.

  15. Applications for unique identifiers in the geological sciences

    Science.gov (United States)

    Klump, J.; Lehnert, K. A.

    2012-12-01

    Even though geology has always been a generalist discipline in many parts, approaches towards questions about Earth's past have become increasingly interdisciplinary. At the same time, a wealth of samples has been collected, the resulting data have been stored in in disciplinary databases, the interpretations published in scientific literature. In the past these resources have existed alongside each other, semantically linked only by the knowledge of the researcher and his peers. One of the main drivers towards the inception of the world wide web was the ability to link scientific sources over the internet. The Uniform Resource Locator (URL) used to locate resources on the web soon turned out to be ephemeral in nature. A more reliable way of addressing objects was needed, a way of persistent identification to make digital objects, or digital representations of objects, part of the record of science. With their high degree of centralisation the scientific publishing houses were quick to implement and adopt a system for unique and persistent identification, the Digital Object Identifier (DOI) ®. At the same time other identifier systems exist alongside DOI, e.g. URN, ARK, handle ®, and others. There many uses for persistent identification in science, other than the identification of journal articles. DOI are already used for the identification of data, thus making data citable. There are several initiatives to assign identifiers to authors and institutions to allow unique identification. A recent development is the application of persistent identifiers for geological samples. As most data in the geosciences are derived from samples, it is crucial to be able to uniquely identify the samples from which a set of data were derived. Incomplete documentation of samples in publications, use of ambiguous sample names are major obstacles for synthesis studies and re-use of data. Access to samples for re-analysis and re-appraisal is limited due to the lack of a central

  16. Identifying different learning styles to enhance the learning experience.

    Science.gov (United States)

    Anderson, Irene

    2016-10-12

    Identifying your preferred learning style can be a useful way to optimise learning opportunities, and can help learners to recognise their strengths and areas for development in the way that learning takes place. It can also help teachers (educators) to recognise where additional activities are required to ensure the learning experience is robust and effective. There are several models available that may be used to identify learning styles. This article discusses these models and considers their usefulness in healthcare education. Models of teaching styles are also considered.

  17. PlateRunner: A Search Engine to Identify EMR Boilerplates.

    Science.gov (United States)

    Divita, Guy; Workman, T Elizabeth; Carter, Marjorie E; Redd, Andrew; Samore, Matthew H; Gundlapalli, Adi V

    2016-01-01

    Medical text contains boilerplated content, an artifact of pull-down forms from EMRs. Boilerplated content is the source of challenges for concept extraction on clinical text. This paper introduces PlateRunner, a search engine on boilerplates from the US Department of Veterans Affairs (VA) EMR. Boilerplates containing concepts should be identified and reviewed to recognize challenging formats, identify high yield document titles, and fine tune section zoning. This search engine has the capability to filter negated and asserted concepts, save and search query results. This tool can save queries, search results, and documents found for later analysis.

  18. How do we identify and foster talent in medical schools?

    DEFF Research Database (Denmark)

    Christensen, Mette Krogh; Cristiancho, Sayra; Jensen, Rune Dall

    2016-01-01

    Background: Talent is highly regarded in high performance sports as a key feature for athletes to succeed. In medicine, talent is not a commonly held conversation, even though, medical students are usually identified as high achieving, internally motivated individuals. We suggest that bringing...... in medicine. The participants in this workshop will gain a better understanding of the notion of talent across different professional contexts. Furthermore, the workshop will encourage participants to share their personal experiences and practices in identifying and selecting talented medical students...

  19. Radiological difficulty in identifying unicompartmental knee replacement dislocation

    Directory of Open Access Journals (Sweden)

    Mr Oruaro Adebayo Onibere, MBBS, MRCS

    2017-09-01

    Full Text Available Unicondylar knee replacement is a relatively common elective orthopedic procedure but is not often seen in the Emergency Department setting. Familiarity with normal clinical and radiological appearances is difficult to gain. Dislocation of the mobile bearing component “spacer” is a known complication of unicondylar knee replacements, and these patients will initially present to the accident and Emergency Department. In this setting, an accurate and prompt diagnosis is necessary to appropriately manage the patient's condition. There is normally a radiological challenge in identifying dislocated mobile bearings on plain radiographs. These patients may need to have further imaging, such as a computer tomographic scan to identify the dislocated mobile bearing.

  20. Identifying risks in the realm of enterprise risk management.

    Science.gov (United States)

    Carroll, Roberta

    2016-01-01

    An enterprise risk management (ERM) discipline is comprehensive and organization-wide. The effectiveness of ERM is governed in part by the strength and breadth of its practices and processes. An essential element in decision making is a thorough process by which organizational risks and value opportunities can be identified. This article will offer identification techniques that go beyond those used in traditional risk management programs and demonstrate how these techniques can be used to identify risks and opportunity in the ERM environment. © 2016 American Society for Healthcare Risk Management of the American Hospital Association.

  1. Identifying the Key Weaknesses in Network Security at Colleges.

    Science.gov (United States)

    Olsen, Florence

    2000-01-01

    A new study identifies and ranks the 10 security gaps responsible for most outsider attacks on college computer networks. The list is intended to help campus system administrators establish priorities as they work to increase security. One network security expert urges that institutions utilize multiple security layers. (DB)

  2. 42 CFR 433.138 - Identifying liable third parties.

    Science.gov (United States)

    2010-10-01

    ... relationship to the applicant or recipient, the social security number (SSN) of the policy holder, and the name... 42 Public Health 4 2010-10-01 2010-10-01 false Identifying liable third parties. 433.138 Section 433.138 Public Health CENTERS FOR MEDICARE & MEDICAID SERVICES, DEPARTMENT OF HEALTH AND HUMAN...

  3. Identifying values and beliefs in an outcomes-based curriculum

    African Journals Online (AJOL)

    Erna Kinsey

    The introduction of Curriculum 2005 and the National Curriculum Statement emphasised the Outcomes-Based Education approach to school education. In an analysis of Curriculum 2005 and the National Curriculum Statement, value and belief systems are identified and integrated in most of the eight learning areas.

  4. Identifying the Transgender Population in the Medicare Program

    Science.gov (United States)

    Proctor, Kimberly; Haffer, Samuel C.; Ewald, Erin; Hodge, Carla; James, Cara V.

    2016-01-01

    Abstract Purpose: To identify and describe the transgender population in the Medicare program using administrative data. Methods: Using a combination of International Classification of Diseases ninth edition (ICD-9) codes relating to transsexualism and gender identity disorder, we analyzed 100% of the 2013 Centers for Medicare & Medicaid Services (CMS) Medicare Fee-For-Service (FFS) “final action” claims from both institutional and noninstitutional providers (∼1 billion claims) to identify individuals who may be transgender Medicare beneficiaries. To confirm, we developed and applied a multistage validation process. Results: Four thousand ninety-eight transgender beneficiaries were identified, of which ∼90% had confirmatory diagnoses, billing codes, or evidence of a hormone prescription. In general, the racial, ethnic, and geographic distribution of the Medicare transgender population tends to reflect the broader Medicare population. However, age, original entitlement status, and disease burden of the transgender population appear substantially different. Conclusions: Using a variety of claims information, ranging from claims history to additional diagnoses, billing modifiers, and hormone prescriptions, we demonstrate that administrative data provide a valuable resource for identifying a lower bound of the Medicare transgender population. In addition, we provide a baseline description of the diversity and disease burden of the population and a framework for future research. PMID:28861539

  5. Identifying strategies to improve research publication output in ...

    African Journals Online (AJOL)

    The health research community in South Africa annually produces a fair number of research papers in national and international health and related journals. Unfortunately, the proportion of papers produced by authors in health and rehabilitation sciences is insignificant compared with other disciplines. To identify strategies ...

  6. Selecting Universal Screening Measures to Identify Students at Risk Academically

    Science.gov (United States)

    Salinger, Rachel L.

    2016-01-01

    Universal screening measures can be used to identify students at risk academically due to learning disabilities or other difficulties. Research and legislation support the use of screening measures early in students' education to ensure they receive any supports necessary to bolster their academic achievement. When selecting a screening measure,…

  7. Identifying desertification risk areas using fuzzy membership and ...

    Indian Academy of Sciences (India)

    Desertification risk assessment is important in order to take proper measures for its prevention. Present research intends to identify the areas under risk of desertification along with their severity in terms of degradation in natural parameters. An integrated model with fuzzy membership analysis, fuzzy rulebased inference ...

  8. Identifying the Determinants of Chronic Absenteeism: A Bioecological Systems Approach

    Science.gov (United States)

    Gottfried, Michael A.; Gee, Kevin A.

    2017-01-01

    Background/Context: Chronic school absenteeism is a pervasive problem across the US; in early education, it is most rampant in kindergarten and its consequences are particularly detrimental, often leading to poorer academic, behavioral and developmental outcomes later in life. Though prior empirical research has identified a broad range of…

  9. Conspicuity and identifiability: efficient calibration tools for synthetic imagery

    Science.gov (United States)

    Toet, Alexander; Hogervorst, Maarten A.; Bijl, Piet

    2004-08-01

    We argue that visual conspicuity and identifiability are two efficient task-related measures that can be deployed to calibrate synthetic imagery that is intended to be used for human visual search and detection tasks. The conspicuity of a target is operationally defined as the region around the center of the visual field where the target is capable to attract visual attention. Visual conspicuity predicts human visual search performance in realistic and military relevant complex scenario's. Conspicuity can easily and quickly be measured either in the field (in complex environments) or in the lab. This eliminates the need for costly and time consuming visual search experiments. The agreement between field and lab measurements implies that conspicuity can be used to validate synthetic imagery. Target identifiability is operationally defined as the amount of Gaussian blur that is required to reduce the target signature to its identification threshold. It is an efficient metric that can be used to gain insight into human identification performance without having to resort to elaborate and costly experiments. Identifiability is directly related to PID-performance, and is therefore well suited for comparing synthetic and realistic imagery. We conclude that synthetic imagery can be calibrated for human visual search and detection tasks by setting the conspicuity and identifiability of targets equal to those of their real world counterparts.

  10. Borrelia burgdorferi adhesins identified using in vivo phage display.

    Science.gov (United States)

    Antonara, Styliani; Chafel, Rebecca M; LaFrance, Michelle; Coburn, Jenifer

    2007-10-01

    Borrelia burgdorferi, the agent of Lyme disease, disseminates from the site of deposition by Ixodes ticks to cause systemic infection. Dissemination occurs through the circulation and through tissue matrices, but the B. burgdorferi molecules that mediate interactions with the endothelium in vivo have not yet been identified. In vivo selection of filamentous phage expressing B. burgdorferi protein fragments on the phage surface identified several new candidate adhesins, and verified the activity of one adhesin that had been previously characterized in vitro. P66, a B. burgdorferi ligand for beta(3)-chain integrins, OspC, a protein that is essential for the establishment of infection in mammals, and Vls, a protein that undergoes antigenic variation in the mammal, were all selected for binding to the murine endothelium in vivo. Additional B. burgdorferi proteins for which no functions have been identified, including all four members of the OspF family and BmpD, were identified as candidate adhesins. The use of in vivo phage display is one approach to the identification of adhesins in pathogenic bacteria that are not easily grown in the laboratory, or for which genetic manipulations are not straightforward.

  11. Systems constellations : A better way to identify branding opportunities?

    NARCIS (Netherlands)

    Jurg, W.; Bloemer, J.; Doorewaard, H.; Peelen, E.

    2008-01-01

    Building strong brands has become one of the main marketing priorities for brand-supportive companies. The leading positivist paradigm in marketing may not be, however, the most-effective perspective in identifying branding opportunities. This paper offers an alternative phenomenological point of

  12. Implications of Identifying Additional Cerebral Metastases during Gamma Knife Radiosurgery

    Directory of Open Access Journals (Sweden)

    Toral R. Patel

    2012-01-01

    Full Text Available Introduction. Gamma Knife radiosurgery (GK-SRS is commonly used to treat cerebral metastases. Although additional intracranial metastases are often found on the day of GK-SRS, the significance of finding them is unknown. Methods. A retrospective review of 133 patients undergoing GK-SRS for cerebral metastases was performed. The change in number of metastases detected between initial referral magnetic resonance imaging (MRI and subsequent treatment MRI was quantified. Multivariate and Kaplan-Meier analyses were employed to examine the significance of identifying additional lesions. Results. Additional lesions were identified in 41% of patients. An increasing number of metastases on referral MRI (=0.001 and the presence of progressive systemic disease (=0.003 were predictive of identifying additional metastases. Median survival was 6.9 months for patients with additional metastases, compared to 12.1 months for patients without additional metastases (hazard ratio 1.56, =0.021. Conclusions. Identifying additional metastases on the day of GK-SRS may add important prognostic information.

  13. Neurobehavioral Mutants Identified in an ENU Mutagenesis Project

    Energy Technology Data Exchange (ETDEWEB)

    Cook, Melloni N. [University of Memphis; Dunning, Jonathan P [University of Memphis; Wiley, Ronald G [Vanderbilt University and Veterans Administration, Nashville, TN; Chesler, Elissa J [ORNL; Johnson, Dabney K [ORNL; Goldowitz, Daniel [University of Tennessee Health Science Center, Memphis

    2007-01-01

    We report on a behavioral screening test battery that successfully identified several neurobehavioral mutants among a large-scale ENU-mutagenized mouse population. Large numbers of ENU mutagenized mice were screened for abnormalities in central nervous system function based on abnormal performance in a series of behavior tasks. We developed and employed a high-throughput screen of behavioral tasks to detect behavioral outliers. Twelve mutant pedigrees, representing a broad range of behavioral phenotypes, have been identified. Specifically, we have identified two open field mutants (one displaying hyper-locomotion, the other hypo-locomotion), four tail suspension mutants (all displaying increased immobility), one nociception mutant (displaying abnormal responsiveness to thermal pain), two prepulse inhibition mutants (displaying poor inhibition of the startle response), one anxiety-related mutant (displaying decreased anxiety in the light/dark test), and one learning and memory mutant (displaying reduced response to the conditioned stimulus) These findings highlight the utility of a set of behavioral tasks used in a high throughput screen to identify neurobehavioral mutants. Further analysis (i.e., behavioral and genetic mapping studies) of mutants is in progress with the ultimate goal of identification of novel genes and mouse models relevant to human disorders as well as the identification of novel therapeutic targets.

  14. Identifying the best climatic predictors in ecology and evolution

    NARCIS (Netherlands)

    Van de Pol, M.; Bailey, Liam; McLean, Nina; Rijsdijk, Laurie; Lawson, C.R.; Brouwer, L.

    2016-01-01

    1.Ecologists and many evolutionary biologists relate variation in physiological, behavioral, life-history, demographic, population and community traits to variation in weather, a key environmental driver. However, identifying which weather variables (e.g. rain, temperature, El Niño index), over

  15. Identifying core domains to assess flare in rheumatoid arthritis

    DEFF Research Database (Denmark)

    Bartlett, Susan J; Hewlett, Sarah; Bingham, Clifton O

    2012-01-01

    For rheumatoid arthritis (RA), there is no consensus on how to define and assess flare. Variability in flare definitions impairs understanding of findings across studies and limits ability to pool results. The OMERACT RA Flare Group sought to identify domains to define RA flares from patient...

  16. BIOELECTRICAL IMPEDANCE VECTOR ANALYSIS IDENTIFIES SARCOPENIA IN NURSING HOME RESIDENTS

    Science.gov (United States)

    Loss of muscle mass and water shifts between body compartments are contributing factors to frailty in the elderly. The body composition changes are especially pronounced in institutionalized elderly. We investigated the ability of single-frequency bioelectrical impedance analysis (BIA) to identify b...

  17. Identifying Facets of Technology Satisfaction: Measure Development and Application

    Science.gov (United States)

    Njoroge, Joyce; Norman, Andrew; Reed, Diana; Suh, Inchul

    2012-01-01

    As institutions of higher learning, universities must devote significant resources in developing intellectual capital in the use of educational technology to sustain their viability. To better understand satisfaction in technology used in classrooms, a psychometric instrument was developed to identify and measure the specific factors of…

  18. Scholars Identify 5 Keys to Urban School Success

    Science.gov (United States)

    Viadero, Debra

    2010-01-01

    Offering a counter-narrative to the school improvement prescriptions that dominate national education debates, a new book based on 15 years of data on public elementary schools in Chicago identifies five tried-and-true ingredients that work, in combination with one another, to spur success in urban schools. The authors liken their "essential…

  19. Identifying market opportunities for Smallholder farmers in Uganda

    African Journals Online (AJOL)

    Mo

    for the range of products identified, in produce markets, local stores and kiosks, butchers, small and large supermarkets, ... also that agricultural research organizations provide market and technical information on which small holder farmers and their service ...... potential, there are those that rural small-scale farmers may.

  20. Identifying Hearing Loss in Young Children: Technology Replaces the Bell

    Science.gov (United States)

    Eiserman, William; Shisler, Lenore

    2010-01-01

    Hearing loss can too easily be misdiagnosed or overlooked by providers serving young children. Parents and professionals may observe a language delay--an "invisible" condition--while failing to identify the underlying cause. Otoacoustic emissions (OAE) hearing screening technology, used extensively with newborns, is becoming an essential tool,…

  1. Identifying failure mechanisms in LDMOS transistors by analytical stability analysis

    NARCIS (Netherlands)

    Ferrara, A.; Steeneken, P.G.; Boksteen, B.K.; Heringa, A.; Scholten, A.J.; Schmitz, Jurriaan; Hueting, Raymond Josephus Engelbart

    2014-01-01

    In this work, analytical stability equations are derived and combined with a physics-based model of an LDMOS transistor in order to identify the primary cause of failure in different operating and bias conditions. It is found that there is a gradual boundary between an electrical failure region at

  2. Cyanobacteria species identified in the Weija and Kpong reservoirs ...

    African Journals Online (AJOL)

    The Kpong and Weija reservoirs supply drinking water to Accra, Ghana. This study was conducted to identify the cyanobacteria present in these reservoirs and to ascertain whether current treatment processes remove whole cyanobacteria cells from the drinking water produced. Cyanotoxins are mostly cell bound and could ...

  3. Identifying Quality in Preschool Education: Progress and Challenge

    Science.gov (United States)

    Hughes, Jan N.

    2010-01-01

    In this article, the author comments on Dominguez, Vitiello, Maier, and Greenfield's (2010) article on identifying quality in preschool education. Dominguez et al. have conducted a methodologically sophisticated study describing the growth of learning behavior among Head Start children. By doing so, they contribute to a growing body of evidence…

  4. Beyond the Folklore: A Strategy for Identifying Quality Undergraduate Colleges

    Science.gov (United States)

    Conrad, Clinton F.

    2012-01-01

    College and university quality--what it is and how to identify it--is a preoccupation of many prospective college students and their parents, high school counselors, and college admission personnel. Regardless of class, race, and gender, it is no longer enough for a growing number of individuals simply to attend college: matriculating at an…

  5. Identifying the best market to sell: A cost function formulation

    Indian Academy of Sciences (India)

    While there is not much literature directly related how to identify the best place to sell a com- modity to maximize profits, we review some of the related academic literature. It should be noted that almost all the work in this area is related to hedging, which unfortunately is not an option for the marginalized Indian farmer.

  6. Identifying targets for quality improvement in hospital antibiotic prescribing

    NARCIS (Netherlands)

    Spreuwel, P.C. van; Blok, H.; Langelaar, M.F.; Kullberg, B.J.; Mouton, J.W.; Natsch, S.S.

    2015-01-01

    OBJECTIVES: To audit antibiotic use in a university hospital and to identify targets for quality improvement in a setting with low antibiotic use and resistance rates. METHODOLOGY: A point-prevalence survey (PPS), using a patient-based audit tool for antibiotic use, was executed in the Radboud

  7. Identifying a common distribution for flood estimation in ungauged ...

    African Journals Online (AJOL)

    This paper attempts to identify a possible common statistical distribution, to model the annual maximum floods observed at various rivers and streams of Botswana using goodness of fit indices based on K-S Statistics and L-Moment Ratios. Results from the two approaches, suggest that Log-Normal distribution adequately ...

  8. Identifying the Enemy: Social Categorization and National Security Policy

    Science.gov (United States)

    Unsworth, Kristene

    2010-01-01

    This dissertation seeks to understand the interplay between informal articulations of social categories and formal instantiations of those categories in official language. Specifically, it explores the process of social categorization as it is used to identify threats to national security. The research employed a qualitative, document-based,…

  9. Spotter's Guide for Identifying and Reporting Severe Local Storms.

    Science.gov (United States)

    National Oceanic and Atmospheric Administration (DOC), Rockville, MD.

    This guide is designed to assist personnel working in the National Weather Service's Severe Local Storm Spotter Networks in identifying and reporting severe local storms. Provided are pictures of cloud types for severe storms including tornadoes, hail, thunder, lightning, heavy rains, and waterspouts. Instructions for key indications to watch for…

  10. Identifying and prioritising services in European terrestrial and freshwater ecosystems

    NARCIS (Netherlands)

    Harrison, P.A.; Vandewalle, M.; Sykes, M.T.; Berry, P.M.; Bugter, R.J.F.; Bello, de F.; Feld, C.K.; Grandin, U.; Harrington, R.; Haslett, J.R.; Jongman, R.H.G.; Luck, G.W.; Martins da Silva, P.; Moora, M.; Settele, J.; Sousa, J.P.; Zobel, M.

    2010-01-01

    Ecosystems are multifunctional and provide humanity with a broad array of vital services. Effective management of services requires an improved evidence base, identifying the role of ecosystems in delivering multiple services, which can assist policy-makers in maintaining them. Here, information

  11. Casefinding Criteria for Use in Identifying Deaf-Blind Children.

    Science.gov (United States)

    Nelson, Catherine E.

    The study was undertaken to develop casefinding criteria for identifying deaf-blind children. Referral sources and investigative potentials were obtained from a demographic survey of 164 cases of deaf-blind persons in Louisiana. Inquiry sheets on the possible sources of casefinding twice were sent to and ranked by a panel of 20 persons, including…

  12. Identifying and Researching Market Opportunities for New High Technology Products.

    Science.gov (United States)

    Dunstan, Peter

    Using a product called the synchro-pulse welder as a case study example, this paper discusses the activities of CSIRO (Commonwealth Scientific and Industrial Research Organisation) in identifying and marketing new high-technology products. A general discussion of CSIRO's market research plans includes two goals to be attained within the next 5…

  13. Identifying local co-regulation relationships in gene expression data.

    Science.gov (United States)

    Pei, Yonggang; Gao, Qinghui; Li, Juntao; Zhao, Xiting

    2014-11-07

    Identifying interesting relationships between pairs of genes, presented over some of experimental conditions in gene expression data set, is useful for discovering novel functional gene interactions. In this paper, we introduce a new method for id entifying L ocal C o-regulation R elationships (IdLCR). These local relationships describe the behaviors of pairwise genes, which are either up- or down-regulated throughout the identified condition subset. IdLCR firstly detects the pairwise gene-gene relationships taking functional forms and the condition subsets by using a regression spline model. Then it measures the relationships using a penalized Pearson correlation and ranks the responding gene pairs by their scores. By this way, those relationships without clearly biological interpretations can be filtered out and the local co-regulation relationships can be obtained. In the simulation data sets, ten different functional relationships are embedded. Applying IdLCR to these data sets, the results show its ability to identify functional relationships and the condition subsets. For micro-array and RNA-seq gene expression data, IdLCR can identify novel biological relationships which are different from those uncovered by IFGR and MINE. Copyright © 2014 Elsevier Ltd. All rights reserved.

  14. An Objective Approach to Identify Spectral Distinctiveness for Hearing Impairment

    Directory of Open Access Journals (Sweden)

    Yeou-Jiunn Chen

    2013-01-01

    Full Text Available To facilitate the process of developing speech perception, speech-language pathologists have to teach a subject with hearing loss the differences between two syllables by manually enhancing acoustic cues of speech. However, this process is time consuming and difficult. Thus, this study proposes an objective approach to automatically identify the regions of spectral distinctiveness between two syllables, which is used for speech-perception training. To accurately represent the characteristics of speech, mel-frequency cepstrum coefficients are selected as analytical parameters. The mismatch between two syllables in time domain is handled by dynamic time warping. Further, a filter bank is adopted to estimate the components in different frequency bands, which are also represented as mel-frequency cepstrum coefficients. The spectral distinctiveness in different frequency bands is then easily estimated by using Euclidean metrics. Finally, a morphological gradient operator is applied to automatically identify the regions of spectral distinctiveness. To evaluate the proposed approach, the identified regions are manipulated and then the manipulated syllables are measured by a close-set based speech-perception test. The experimental results demonstrated that the identified regions of spectral distinctiveness are very useful in speech perception, which indeed can help speech-language pathologists in speech-perception training.

  15. Identifying approaches and tools for evaluating community-based ...

    African Journals Online (AJOL)

    Methods: A literature search was carried out to identify approaches and tools that could be used in Africa to evaluate CBE programmes. The search included published, peer-reviewed literature as well as grey literature and websites. Evaluation tools considered appropriate were obtained from the articles or their authors for ...

  16. Identifying predictors of comfort and discomfort in using hand tools

    NARCIS (Netherlands)

    Kuijt-Evers, L.F.M.; Twisk, J.; Groenesteijn, L.; Looze, M.P.de; Vink, P.

    2005-01-01

    The aim of the study was to identify predictors of comfort and discomfort in using hand tools. For this purpose, the comfort questionnaire for hand tools (CQH) was developed based on the results of a previous study. In the current study, four screwdrivers were evaluated on comfort (expected comfort

  17. Flavonoid compounds identified in Alchemilla l. species collected in ...

    African Journals Online (AJOL)

    Rutin (quercetin-3-O-rutinoside) and the flavonoid glycoside, shown as Rf2 were found in all species. Quercitrin and isoquercetin were determined in all analysed species but A. procerrima. Hyperoside was identified in all species except for A. stricta. Vitexin was determined only in A.stricta. Orientin was determined in A.

  18. Application of Multilevel Logistic Model to Identify Correlates of ...

    African Journals Online (AJOL)

    Implementation of multilevel model is becoming a common analytic technique over a wide range of disciplines including social and economic sciences. In this paper, an attempt has been made to assess the application of multilevel logistic model for the purpose of identifying the effect of household characteristics on poverty ...

  19. Learning Outcomes in Academic Disciplines: Identifying Common Ground

    Science.gov (United States)

    Sharp, Marybeth Drechsler; Komives, Susan R.; Fincher, Justin

    2011-01-01

    Diverse entities, such as disciplinary-based accreditors, academic affairs associations, and student affairs professional organizations, promote student learning outcomes. This study identified eight themes among outcomes required by 25 disciplinary accreditors who are members of the Council for Higher Education Accreditation. The authors compared…

  20. Identifying International Agricultural Concepts for Secondary Agricultural Education Curriculum

    Science.gov (United States)

    Conner, Nathan W.; Gates, Hailey; Stripling, Christopher T.

    2017-01-01

    The globalization of the agriculture industry has created an emerging need for agricultural education in the United States to take a more globalized approach to prepare students for future careers in agriculture. The purpose of this study was to identify international agricultural concepts for secondary agricultural education curriculum. A Delphi…

  1. Effectiveness of a structured checklist of risk factors in identifying ...

    African Journals Online (AJOL)

    Background: Gestational diabetes mellitus (GDM) is associated with increased risk of mortality and morbidity for pregnant women and newborns. Identifying pregnant women with risk factors for GDM based on the clinical suspicion is a popular approach. However, the effectiveness of the use of a structured checklist of risk ...

  2. Identifying Food Safety Concerns when Communication Barriers Exist

    Science.gov (United States)

    Neal, Jack A.; Dawson, Mary; Madera, Juan M.

    2011-01-01

    Abstract: Students must be prepared to lead a diverse workforce. The objective of this study was to establish a teaching method that helps students identify barriers to food safety while working in a simulated environment with communication barriers. This study employed a perspective taking exercise based upon the principles of social learning…

  3. Identifying Hearing Loss By Means Of Iridology | Stearn | African ...

    African Journals Online (AJOL)

    Isolated reports of hearing loss presenting as markings on the iris exist, but to date the effectiveness of iridology to identify hearing loss has not been investigated. This study therefore aimed to determine the efficacy of iridological analysis in the identification of moderate to profound sensorineural hearing loss in adolescents ...

  4. Identifying multiple influential spreaders via local structural similarity

    Science.gov (United States)

    Liu, J.-G.; Wang, Z.-Y.; Guo, Q.; Guo, L.; Chen, Q.; Ni, Y.-Z.

    2017-07-01

    Identifying the nodes with largest spreading influence is of significance for information diffusion, product exposure and contagious disease detection. In this letter, based on the local structural similarity, we present a method (LSS) to identify the multiple influential spreaders. Firstly, we choose the node with the largest degree as the first spreader. Then the new spreaders would be selected if they belong to the first- or second-order-neighbor node set of the spreaders and their local structural similarities with other spreaders are smaller than the threshold parameter r. Comparing with the susceptible-infected-recovered model, the experimental results for four empirical networks show that the spreading influences of spreaders selected by the local structural similarity method are larger than that of the color method, the degree, betweenness and closeness centralities. The further experimental results for the Barabàsi-Albert and random networks show that the LSS method could identify the multiple influential spreaders more accurately, which suggests that the local structural property plays a more important role than the distance for identifying multiple influential spreaders.

  5. Identifying Inputs to Leadership Development within an Interdisciplinary Leadership Minor

    Science.gov (United States)

    McKim, Aaron J.; Sorensen, Tyson J.; Velez, Jonathan J.

    2015-01-01

    Researchers conducted a qualitative analysis of students' experiences while enrolled in an interdisciplinary leadership minor with the intent to determine programmatic inputs that spur leadership development. Based on students' reflections, three domains of programmatic inputs for leadership development within the minor were identified. These…

  6. Using Metacognitions to Identify Emotionally Vulnerable College Students

    Science.gov (United States)

    Barahmand, Usha; Abolghasemi, Abbas; Jahanmohammadi, Saleh

    2008-01-01

    Objective: To examine the association between negative metacognitions and indices of mental health in order to help identify individuals at risk for future psychopathology. Method: A randomly selected sample of 378 undergraduates responded to the General Health Questionnaire and the Metacognitions Questionnaire. Results: A curvilinear relationship…

  7. Development of microsatellite markers for identifying Brazilian coffee arabica varieties

    NARCIS (Netherlands)

    Vieira, E.S.N.; Pinho, Von E.V.R.; Carvalho, M.G.G.; Esselink, G.; Vosman, B.

    2010-01-01

    Microsatellite markers, also known as SSRs (Simple Sequence Repeats), have proved to be excellent tools for identifying variety and determining genetic relationships. A set of 127 SSR markers was used to analyze genetic similarity in twenty five Coffea arabica varieties. These were composed of

  8. Towards Mining Latent Client Identifiers from Network Traffic

    Directory of Open Access Journals (Sweden)

    Jain Sakshi

    2016-04-01

    Full Text Available Websites extensively track users via identifiers that uniquely map to client machines or user accounts. Although such tracking has desirable properties like enabling personalization and website analytics, it also raises serious concerns about online user privacy, and can potentially enable illicit surveillance by adversaries who broadly monitor network traffic.

  9. Identifying sources and estimating glandular output of salivary TIMP-1

    DEFF Research Database (Denmark)

    Holten-Andersen, Lars; Jensen, Siri Beier; Jensen, Allan Bardow

    2008-01-01

    Objective. Tissue inhibitor of metalloproteinases 1 (TIMP-1) has been identified as a potential biomarker in diseases such as cancer, cardiovascular diseases and diabetes. Since TIMP-1 resides in most tissues and bodily fluids, we evaluated the potential of using saliva to obtain reproducible TIM...

  10. Tomato chlorotic spot virus Identified in Marsdenia floribunda in Florida

    Science.gov (United States)

    Ornamental crops including hoya, annual vinca and portulaca have recently been identified with Tomato chlorotic spot virus (TCSV) infections in Florida. Observations of Marsdenia floribunda, commonly known as Madagascar jasmine, in September 2016 revealed TCSV-like symptoms. Testing of these sympt...

  11. Identifying well-formed biomedical phrases in MEDLINE® text.

    Science.gov (United States)

    Kim, Won; Yeganova, Lana; Comeau, Donald C; Wilbur, W John

    2012-12-01

    In the modern world people frequently interact with retrieval systems to satisfy their information needs. Humanly understandable well-formed phrases represent a crucial interface between humans and the web, and the ability to index and search with such phrases is beneficial for human-web interactions. In this paper we consider the problem of identifying humanly understandable, well formed, and high quality biomedical phrases in MEDLINE documents. The main approaches used previously for detecting such phrases are syntactic, statistical, and a hybrid approach combining these two. In this paper we propose a supervised learning approach for identifying high quality phrases. First we obtain a set of known well-formed useful phrases from an existing source and label these phrases as positive. We then extract from MEDLINE a large set of multiword strings that do not contain stop words or punctuation. We believe this unlabeled set contains many well-formed phrases. Our goal is to identify these additional high quality phrases. We examine various feature combinations and several machine learning strategies designed to solve this problem. A proper choice of machine learning methods and features identifies in the large collection strings that are likely to be high quality phrases. We evaluate our approach by making human judgments on multiword strings extracted from MEDLINE using our methods. We find that over 85% of such extracted phrase candidates are humanly judged to be of high quality. Published by Elsevier Inc.

  12. Identifying the Comparative Advantage of Products and Industries of ...

    African Journals Online (AJOL)

    In addition, the results of the RCA analysis were matched to the export opportunities identified by the decision support model (TRADE-DSM) to determine which of the comparative advantage products have realistic export opportunities. Eight of the top 15 comparative advantage products were found to have realistic export ...

  13. Identifying values and beliefs in an outcomes-based curriculum ...

    African Journals Online (AJOL)

    The introduction of Curriculum 2005 and the National Curriculum Statement emphasised the Outcomes-Based Education approach to school education. In an analysis of Curriculum 2005 and the National Curriculum Statement, value and belief systems are identified and integrated in most of the eight learning areas.

  14. Inclusive education in Tanzania: Are all learners identified and their ...

    African Journals Online (AJOL)

    It is crucial for any country to identify and assess the special needs of all children upfront, i.e. before implementing any inclusive education program, if quality and equity education is to be provided. This paper reports the findings of a study which was conducted to examine the prevalence of refractive errors and other visual ...

  15. Identifying primary concerns in patients newly diagnosed with lung cancer.

    Science.gov (United States)

    Lehto, Rebecca H

    2011-07-01

    To compare illness concerns before and after surgery in patients newly diagnosed with early-stage lung cancer, and to determine whether perceived healthcare environment factors were associated with reduced concerns and cancer-related worry. Participants completed a semistructured interview using the conceptual content cognitive map (3CM) method. Important concepts were identified in a spatial array representative of a cognitive map of the illness. A comprehensive cancer center and a Veterans Affairs medical center in the midwestern United States. 34 men (n=22) and women (n=12), aged 47-83 years (X=65, SD=10), with newly diagnosed lung cancer were interviewed at the time of diagnosis and again three to four weeks after surgery. Content and frequency analysis and descriptive statistics were used to characterize the data. Correlation studies and paired t tests were used to determine relationships among the main study variables. Illness perceptions, worry, and health environment experience. Twelve primary content domains were identified pre- and postoperatively (seven negative and five positive). Cancer-related worry was related to negative content and to fears both before and after surgery. Positive health environment perceptions were related to positive content after surgery. The findings demonstrate important areas of concern that can be targeted to reduce psychological distress and promote adaptation. The willingness of nurses to identify concerns, assist patients to participate in care, and identify strategies to manage unresolved issues early in the treatment trajectory is integral to optimize long-term adjustment.

  16. Identifying potential surface water sampling sites for emerging ...

    African Journals Online (AJOL)

    The occurrence and concentrations of ECPs in South African water bodies are largely unknown, so monitoring is required in order to determine the potential threat that these ECPs may pose. Relevant surface water sampling sites in the Gauteng Province of South Africa were identified utilising a geographic information ...

  17. Researchers Develop Method to Identify Sparticles in Big Bang Conditions

    CERN Multimedia

    2008-01-01

    Three Northeastern University researchers have proposed a new approach for the highly anticipated discovery of supersymmetric particles, often called sparticles. The methodology, which was published in the December 21 issue of the Physical Review Letters, is based on identifying the hierarchical mass patterns of sparticles, which are assumed to exist in a new class of particle physics theories beyond the Standard Model.

  18. Identifying Balanced Action Learning: Cases of South Korean Practices

    Science.gov (United States)

    Cho, Yonjoo; Bong, Hyeon-Cheol

    2010-01-01

    Despite considerable commitment to the application of action learning as leadership and organization development by a large number of Korean organizations, few identified empirical studies of action learning practices have been reported. The purpose of this study was to conduct case studies of South Korean action learning practices to examine…

  19. Performance testing to identify climate-ready trees

    Science.gov (United States)

    E.Gregory McPherson; Alison M. Berry; Natalie S. van Doorn

    2018-01-01

    Urban forests produce ecosystem services that can benefit city dwellers, but are especially vulnerable to climate change stressors such as heat, drought, extreme winds and pests. Tree selection is an important decision point for managers wanting to transition to a more stable and resilient urban forest structure. This study describes a five-step process to identify and...

  20. 26 CFR 301.6109-1 - Identifying numbers.

    Science.gov (United States)

    2010-04-01

    ... are necessary to insure proper administration of the process by which the Internal Revenue Service... persons which will be identified as such in the records and database of the Internal Revenue Service. A... the records and database of the Internal Revenue Service as a number belonging to a nonresident alien...

  1. Identifying subgroups of patients using latent class analysis

    DEFF Research Database (Denmark)

    Nielsen, Anne Mølgaard; Kent, Peter; Hestbæk, Lise

    2017-01-01

    BACKGROUND: Heterogeneity in patients with low back pain (LBP) is well recognised and different approaches to subgrouping have been proposed. Latent Class Analysis (LCA) is a statistical technique that is increasingly being used to identify subgroups based on patient characteristics. However, as ...

  2. 38 CFR 59.3 - Federal Application Identifier.

    Science.gov (United States)

    2010-07-01

    ... 38 Pensions, Bonuses, and Veterans' Relief 2 2010-07-01 2010-07-01 false Federal Application Identifier. 59.3 Section 59.3 Pensions, Bonuses, and Veterans' Relief DEPARTMENT OF VETERANS AFFAIRS (CONTINUED) GRANTS TO STATES FOR CONSTRUCTION OR ACQUISITION OF STATE HOMES § 59.3 Federal Application...

  3. The Challenge of Identifying Gifted/Learning Disabled Students

    Science.gov (United States)

    Krochak, Linda A.; Ryan, Thomas G.

    2007-01-01

    The following contemporary review illuminates several of the "best methods" to accurately identify gifted/learning disabled (GLD) students? Explanations which clearly define what it means to be gifted, learning disabled (LD) and gifted/learning disabled (GLD) are included and incorporated into a typology of three identities of GLD…

  4. Modelling intelligence-led policing to identify its potential

    NARCIS (Netherlands)

    Hengst-Bruggeling, M. den; Graaf, H.A.L.M. de; Scheepstal, P.G.M. van

    2014-01-01

    lntelligence-led policing is a concept of policing that has been applied throughout the world. Despite some encouraging reports, the effect of intelligence-led policing is largely unknown. This paper presents a method with which it is possible to identify intelligence-led policing's potential to

  5. A tool for identifying potential Eucalyptus nitens seed orchard sites ...

    African Journals Online (AJOL)

    Shy seed production in orchards of Eucalyptus nitens is a major barrier to the deployment of genetic gain in South African plantations. A machine learning method was used to identify optimal sites for the establishment of E. nitens seed orchards within the plantation forestry landscape of the summer rainfall region of South ...

  6. Identifying the best market to sell: A cost function formulation

    Indian Academy of Sciences (India)

    One of the main objectives of a farmer is to sell his final agricultural produce so as to maximize his profits. While he has several options, in terms of the markets where he can sell his produce, he is faced with a dilemma of identifying a market where he should sell his produce. There are several factors, like. the distance of the ...

  7. Identifying distinct classes of bladder carcinoma using microarrays

    DEFF Research Database (Denmark)

    Andersen, Lars Dyrskjøt; Andersen, Thomas Thykjær; Kruhøffer, Mogens

    2003-01-01

    identified three major stages, Ta, T1 and T2-4, with the Ta tumors further classified into subgroups. We built a 32-gene molecular classifier using a cross-validation approach that was able to classify benign and muscle-invasive tumors with close correlation to pathological staging in an independent test set...

  8. From Unresolved Anger to Sadness: Identifying Physiological Correlates

    Science.gov (United States)

    Rochman, Daniel; Diamond, Gary M.

    2008-01-01

    This study was designed to identify physiological correlates of unresolved anger and sadness, and the shift between these emotions, in a context similar to that of emotion-focused, experiential psychotherapy. Twenty-seven university students reporting unresolved anger toward an attachment figure were induced to experience and express unresolved…

  9. Identifying and Mitigating Sources of School Revenue Erosion

    Science.gov (United States)

    Prombo, Michael; Dalianis, Ares G.; Metcalf, Scott R.

    2009-01-01

    Preserving existing revenues is an essential component of the work of school business officials. The broad ranges of activities that can affect school district revenues make identifying potential threats difficult. By understanding the issues that affect school district revenue, school business officials are better able to diminish its erosion--a…

  10. 75 FR 14539 - Furnishing Identifying Number of Tax Return Preparer

    Science.gov (United States)

    2010-03-26

    ... continuing education requirements, and meet certain ethical standards, but not to pass a minimum competency... Business and Work Opportunity Tax Act of 2007 (Pub. L. 110-28, 121 Stat. 112), amended section 6109(a)(4... they turn for assistance are knowledgeable, skilled, and ethical. 1. Identifying Numbers Generally...

  11. Identifying Outpatients with Entrenched Suicidal Ideation Following Hospitalization

    Science.gov (United States)

    O'Connor, Stephen S.; Jobes, David A.; Comtois, Katherine Anne; Atkins, David C.; Janis, Karin; Chessen, Chloe E.; Landes, Sara J.

    2012-01-01

    The purpose of this study was to identify outpatients who experience entrenched suicidal ideation following inpatient psychiatric hospitalization. Our findings suggest that the use of a suicidal ambivalence index score was helpful at discriminating those who reported significantly greater ratings of suicidal ideation across a 1-year period of…

  12. Identifying marine pelagic ecosystem management objectives and indicators

    DEFF Research Database (Denmark)

    Trenkel, Verena M.; Hintzen, Niels T.; Farnsworth, Keith D.

    2015-01-01

    to the development of objectives, for this study stakeholders explored intermediate level ecological, economic and social management objectives for Northeast Atlantic pelagic ecosystems. Stakeholder workshops were undertaken with participants being free to identify objectives based on their own insights and needs...

  13. A Triangulation Method for Identifying Hydrostratigraphic Locations of Well Screens

    Energy Technology Data Exchange (ETDEWEB)

    Whiteside, T. S. [Savannah River Site (SRS), Aiken, SC (United States). Savannah River National Lab. (SRNL). Radiological Performance Assessment

    2015-01-31

    A method to identify the hydrostratigraphic location of well screens was developed using triangulation with known locations. This method was applied to all of the monitor wells being used to develop the new GSA groundwater model. Results from this method are closely aligned with those from an alternate method which uses a mesh surface.

  14. PIDapalooza – the open festival for persistent identifiers

    Directory of Open Access Journals (Sweden)

    Alice Meadows

    2017-11-01

    Full Text Available In 2016 three persistent identifier (PID organizations – Crossref, DataCite and ORCID – together with California Digital Library organized PIDapalooza, the first open festival for PIDs. The next PIDapalooza will take place on 23–24 January 2018 in Girona, Spain. This review reports back on PIDapalooza 2016 and looks forward to PIDapalooza 2018.

  15. 'Omics' approaches in tomato aimed at identifying candidate genes ...

    African Journals Online (AJOL)

    In this review, we will focus on the role of the different high-throughput technologies in enhancing tomato breeding particularly for fruit quality traits. We also describe how two 'omics' approaches could be combined in order to identify candidate genes for the genetic control of ascorbic acid accumulation in tomato fruit.

  16. 77 FR 8753 - Furnishing Identifying Number of Tax Return Preparer

    Science.gov (United States)

    2012-02-15

    ... compliance check on a tax return preparer who applies for or renews a PTIN or other prescribed identifying... IRS may conduct a suitability check, in addition to a Federal tax compliance check, on certain tax... preparer will be subject to a suitability check, as well as a tax compliance check. Proposed Effective...

  17. Different Skills? Identifying Differentially Effective Teachers of English Language Learners

    Science.gov (United States)

    Master, Benjamin; Loeb, Susanna; Whitney, Camille; Wyckoff, James

    2016-01-01

    Nationwide, K-12 students designated as English language learners (ELLs) must learn both language and content simultaneously, and ELLs score far below the national average in math achievement. Many educators have suggested that identifying or developing teachers with skills specific to ELLs' instructional needs may be critical to addressing this…

  18. Identifying Different Registers of Digital Literacy in Virtual Learning Environments

    Science.gov (United States)

    Knutsson, Ola; Blasjo, Mona.; Hallsten, Stina; Karlstrom, Petter

    2012-01-01

    In this paper social semiotics, and systemic functional linguistics in particular, are used in order to identify registers of digital literacy in the use of virtual learning environments. The framework of social semiotics provides means to systemize and discuss digital literacy as a linguistic and semiotic issue. The following research question…

  19. Faculty Use of Author Identifiers and Researcher Networking Tools

    Science.gov (United States)

    Tran, Clara Y.; Lyon, Jennifer A.

    2017-01-01

    This cross-sectional survey focused on faculty use and knowledge of author identifiers and researcher networking systems, and professional use of social media, at a large state university. Results from 296 completed faculty surveys representing all disciplines (9.3% response rate) show low levels of awareness and variable resource preferences. The…

  20. 31 CFR 270.3 - Requests for identifiable records.

    Science.gov (United States)

    2010-07-01

    ... 31 Money and Finance: Treasury 2 2010-07-01 2010-07-01 false Requests for identifiable records. 270.3 Section 270.3 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) FISCAL SERVICE, DEPARTMENT OF THE TREASURY FINANCIAL MANAGEMENT SERVICE AVAILABILITY OF RECORDS § 270.3...

  1. Identifying Shared Values for School-Affiliated Student Organizations.

    Science.gov (United States)

    Bush, Antonio A; Buhlinger, Kaitlyn M; McLaughlin, Jacqueline E

    2017-11-01

    Objective. To identify shared values for student organizations. Methods. A three-round Delphi approach was utilized to identify and prioritize shared values among student organization leadership. In round 1, student leaders selected 15 values from a list of 36 organizational values and were given an opportunity to include up to five suggestions not incorporated within the original list. Student leaders narrowed the 15 values to 12 in round 2. The top 12 priorities were ranked in round 3 and participants were invited to write a brief statement regarding their perspectives of the results. Results. Twelve shared values were identified and ranked: professional development, improving leadership of your members, advancing the role of pharmacy, planning quality events, networking, improving the academic experience for peers, community service, learning from pharmacy shadowing/speakers, social outlet, recruitment/gaining student membership, attracting students to events, and gaining national/local attention or awards. Conclusion. This study contributes to the small but growing body of literature concerning student organizations in pharmacy education and provides a foundation by which this work could be advanced. Given the importance of student organizations in promoting student development, identifying strategies for supporting and facilitating the effectiveness of these groups is critical for optimizing student outcomes and institutional effectiveness.

  2. Identifying cognitive predictors of reactive and proactive aggression

    NARCIS (Netherlands)

    Brugman, S.; Lobbestael, J.; Arntz, A.; Cima, M.; Schuhmann, T.; Dambacher, F.; Sack, A.T.

    2015-01-01

    The aim of this study was to identify implicit cognitive predictors of aggressive behavior. Specifically, the predictive value of an attentional bias for aggressive stimuli and automatic association of the self and aggression was examined for reactive and proactive aggressive behavior in a

  3. Sequencing of neuroblastoma identifies chromothripsis and defects in neuritogenesis genes

    NARCIS (Netherlands)

    J. Molenaar (Jan); J. Koster (Jan); D. Zwijnenburg (Danny); P. van Sluis (Peter); L.J. Valentijn (Linda); I. van der Ploeg (Ida); M. Hamdi (Mohamed); J. van Nes (Johan); B.A. Westerman (Bart); J. van Arkel (Jennemiek); M.E. Ebus; F. Haneveld (Franciska); A. Lakeman (Arjan); L. Schild (Linda); P. Molenaar (Piet); P. Stroeken (Peter); M.M. van Noesel (Max); I. Øra (Ingrid); J.P. di Santo (James); H.N. Caron (Huib); E.M. Westerhout (Ellen); R. Versteeg (Rogier)

    2012-01-01

    textabstractNeuroblastoma is a childhood tumour of the peripheral sympathetic nervous system. The pathogenesis has for a long time been quite enigmatic, as only very few gene defects were identified in this often lethal tumour. Frequently detected gene alterations are limited to MYCN amplification

  4. Technology Implementation in Education--Identifying Barriers to Fidelity

    Science.gov (United States)

    Monroe, Arla K.; Dennis, William J.; Johnson, Daniel L.

    2012-01-01

    This report describes a problem-based learning project focused on determining the barriers to the implementation of technological innovations. that properly executed technology implementation is an instructional variable related to student achievement; yet, school district leaders are faced with the problem of recognizing and identifying the…

  5. Identifying Creativity during Problem Solving Using Linguistic Features

    Science.gov (United States)

    Skalicky, Stephen; Crossley, Scott A.; McNamara, Danielle S.; Muldner, Kasia

    2017-01-01

    Creativity is commonly assessed using divergent thinking tasks, which measure the fluency, flexibility, originality, and elaboration of participant output on a variety of different tasks. This study assesses the degree to which creativity can be identified based on linguistic features of participants' language while completing collaborative…

  6. Adaptive Neural Network Nonparametric Identifier With Normalized Learning Laws.

    Science.gov (United States)

    Chairez, Isaac

    2017-05-01

    This paper addresses the design of a normalized convergent learning law for neural networks (NNs) with continuous dynamics. The NN is used here to obtain a nonparametric model for uncertain systems described by a set of ordinary differential equations. The source of uncertainties is the presence of some external perturbations and poor knowledge of the nonlinear function describing the system dynamics. A new adaptive algorithm based on normalized algorithms was used to adjust the weights of the NN. The adaptive algorithm was derived by means of a nonstandard logarithmic Lyapunov function (LLF). Two identifiers were designed using two variations of LLFs leading to a normalized learning law for the first identifier and a variable gain normalized learning law. In the case of the second identifier, the inclusion of normalized learning laws yields to reduce the size of the convergence region obtained as solution of the practical stability analysis. On the other hand, the velocity of convergence for the learning laws depends on the norm of errors in inverse form. This fact avoids the peaking transient behavior in the time evolution of weights that accelerates the convergence of identification error. A numerical example demonstrates the improvements achieved by the algorithm introduced in this paper compared with classical schemes with no-normalized continuous learning methods. A comparison of the identification performance achieved by the no-normalized identifier and the ones developed in this paper shows the benefits of the learning law proposed in this paper.

  7. Salma Hegga: Identifying adaptation strategies for semi-arid regions ...

    International Development Research Centre (IDRC) Digital Library (Canada)

    2015-02-18

    Feb 18, 2015 ... Together with teams from Southern, Western, and Eastern Africa, and India, she is working to assess vulnerability and adaptation to climate change in semi-arid regions. The research aims to identify adaptation strategies in these areas and determine which are the most effective. This research will also ...

  8. Text mining electronic health records to identify hospital adverse events

    DEFF Research Database (Denmark)

    Gerdes, Lars Ulrik; Hardahl, Christian

    2013-01-01

    Manual reviews of health records to identify possible adverse events are time consuming. We are developing a method based on natural language processing to quickly search electronic health records for common triggers and adverse events. Our results agree fairly well with those obtained using manu...

  9. Identifying Leadership Roles for Quality in Early Childhood Education Programmes

    Science.gov (United States)

    Ho, Dora Choi Wa

    2011-01-01

    This article aims to identify leadership roles for quality in early childhood programmes in the local settings of a sample of Hong Kong preschools. Two schools were selected for the study, both of which were rated as excellent in the quality assurance inspections of a local education authority. Effective leadership was explored from the multiple…

  10. Simple sequence repeat (SSR) markers are effective for identifying ...

    African Journals Online (AJOL)

    The present study characterized and identified pear cultivars growing in the southern region of Minas Gerais State, Brazil, using microsatellite markers. Nineteen (19) pear cultivars were collected from two sites of Southern Minas Gerais State: Ribeirão Vermelho and Lavras. DNA was extracted from newly formed leaves and ...

  11. Identifying learning characteristics of the gifted Students in the ...

    African Journals Online (AJOL)

    The failure of schools, teachers and counsellors to identify gifted students as well as responding to their unique characteristics and learning needs give rise to this paper. Gifted learners possess high level of intelligence than their peers, but are disadvantaged in the sense that they are not given the opportunity to reach their ...

  12. Identifying patients at high risk for obstructive sleep apnoea ...

    African Journals Online (AJOL)

    Background: Obstructive sleep apnoea is associated with significant health consequences. A significant proportion of hospitalized patients at risk for obstructive sleep apnoea were never identified and referred for polysomnography for diagnosis. The objective of this study was to determine the factors associated with high ...

  13. Identifying and Evaluating External Validity Evidence for Passing Scores

    Science.gov (United States)

    Davis-Becker, Susan L.; Buckendahl, Chad W.

    2013-01-01

    A critical component of the standard setting process is collecting evidence to evaluate the recommended cut scores and their use for making decisions and classifying students based on test performance. Kane (1994, 2001) proposed a framework by which practitioners can identify and evaluate evidence of the results of the standard setting from (1)…

  14. Using an Online Dictionary for Identifying the Meanings of Verb ...

    African Journals Online (AJOL)

    This article reports on the results of a study which investigated the use of an online dictionary by Chinese EFL learners in identifying the meanings of verb phrases. Thirty-two stu-dents with English as major subject participated in a meaning determination task with and without the help of the Macmillan English Dictionary ...

  15. Identifying Predictors of Negative Psychological Reactions to Stalking Victimization

    Science.gov (United States)

    Johnson, Matthew C.; Kercher, Glen A.

    2009-01-01

    Victims of stalking often experience a number of negative psychological problems including such things as fear, symptoms of depression, and anger. However, research on factors that lead to these outcomes is limited. The goal of this study was to first identify distinct subgroups of stalking victims based on measures of psychological problems…

  16. Original Research Identifying patients at high risk for obstructive ...

    African Journals Online (AJOL)

    Abstract. Background. Obstructive sleep apnoea is associated with significant health consequences. A significant proportion of hospitalized patients at risk for obstructive sleep apnoea were never identified and referred for polysomnography for diagnosis. The objective of this study was to determine the factors associated ...

  17. From control system security indices to attack identifiability

    NARCIS (Netherlands)

    Herdeiro Teixeira, A.M.; Sandberg, H

    2016-01-01

    In this paper, we investigate detectability and identifiability of attacks on linear dynamical systems that are subjected to external disturbances. We generalize a concept for a security index, which was previously introduced for static systems. The index exactly quantifies the resources

  18. Early post-cleavage stages and abnormalities identified in the ...

    African Journals Online (AJOL)

    Six early, post-cleavage embryonic stages for chokka squid Loligo vulgaris reynaudii eggs that were developed in an aquarium are identified and described, expanding the embryonic stages for this species from 14 to 20. The influence of water temperature on embryonic development is described. At temperatures  ...

  19. Researchers identify influences in information technology career choices for women

    OpenAIRE

    Elliott, Jean

    2005-01-01

    A Virginia Tech team of researchers has identified five factors that influence girls' informational technology (IT) career choices. Backed with more than $882,000 in funding by the National Science Foundation, the statewide project "Women in Information Technology: Pivotal Transitions from School to Careers" evaluates the impact of family, peers, school, and community on girls' perceptions of IT careers.

  20. A Framework for Identifying and Classifying Undergraduate Student Proof Errors

    Science.gov (United States)

    Strickland, S.; Rand, B.

    2016-01-01

    This paper describes a framework for identifying, classifying, and coding student proofs, modified from existing proof-grading rubrics. The framework includes 20 common errors, as well as categories for interpreting the severity of the error. The coding scheme is intended for use in a classroom context, for providing effective student feedback. In…

  1. A framework for identifying carbon hotspots and forest management drivers

    Science.gov (United States)

    Nilesh Timilsina; Francisco J. Escobedo; Wendell P. Cropper; Amr Abd-Elrahman; Thomas Brandeis; Sonia Delphin; Samuel Lambert

    2013-01-01

    Spatial analyses of ecosystem system services that are directly relevant to both forest management decision making and conservation in the subtropics are rare. Also, frameworks that identify and map carbon stocks and corresponding forest management drivers using available regional, national, and international-level forest inventory datasets could provide insights into...

  2. The Dilemma of Identifying Learning Disabled Hearing-Impaired Students.

    Science.gov (United States)

    Powers, Ann

    1988-01-01

    A teacher, speech-language pathologist, school principal, and audiologist rated 27 hearing-impaired elementary students on effective use of language, speech, and sign language and on presence of a learning disability and/or behavior problem. Ratings were compared with each other and with test scores purporting to identify learning disabilities or…

  3. Search filters to identify geriatric medicine in Medline

    NARCIS (Netherlands)

    van de Glind, Esther M. M.; van Munster, Barbara C.; Spijker, René; Scholten, Rob J. P. M.; Hooft, Lotty

    2012-01-01

    Objectives To create user-friendly search filters with high sensitivity, specificity, and precision to identify articles on geriatric medicine in Medline. Design A diagnostic test assessment framework was used. A reference set of 2255 articles was created by hand-searching 22 biomedical journals in

  4. Identifying Threshold Concepts in the Careers of Educational Developers

    Science.gov (United States)

    Timmermans, Julie A.

    2014-01-01

    The purpose of this multiple case study was to identify threshold concepts in the careers of educational developers. Twenty-one common threshold concepts emerged, with one threshold concept common among all participants: Facilitating a change process. The remaining 20 threshold concepts were captured in the following three categories: (1) Ways of…

  5. Blood Pressure Loci Identified with a Gene-Centric Array

    NARCIS (Netherlands)

    Johnson, Toby; Gaunt, Tom R.; Newhouse, Stephen J.; Padmanabhan, Sandosh; Tomaszewski, Maciej; Kumari, Meena; Morris, Richard W.; Tzoulaki, Ioanna; O'Brien, Eoin T.; Poulter, Neil R.; Sever, Peter; Shields, Denis C.; Thom, Simon; Wannamethee, Sasiwarang G.; Whincup, Peter H.; Brown, Morris J.; Connell, John M.; Dobson, Richard J.; Howard, Philip J.; Mein, Charles A.; Onipinla, Abiodun; Shaw-Hawkins, Sue; Zhang, Yun; Smith, George Davey; Day, Ian N. M.; Lawlor, Debbie A.; Goodall, Alison H.; Fowkes, F. Gerald; Abecasis, Goncalo R.; Elliott, Paul; Gateva, Vesela; Braund, Peter S.; Burton, Paul R.; Nelson, Christopher P.; Tobin, Martin D.; van der Harst, Pim; Glorioso, Nicola; Neuvrith, Hani; Salvi, Erika; Staessen, Jan A.; Stucchi, Andrea; Devos, Nabila; Jeunemaitre, Xavier; Plouin, Pierre-Francois; Tichet, Jean; Juhanson, Peeter; Org, Elin; Putku, Margus; Sober, Siim; Veldre, Gudrun; Viigimaa, Margus; Levinsson, Anna; Rosengren, Annika; Thelle, Dag S.; Hastie, Claire E.; Hedner, Thomas; Lee, Wai K.; Melander, Olle; Wahlstrand, Bjoern; Hardy, Rebecca; Wong, Andrew; Cooper, Jackie A.; Palmen, Jutta; Chen, Li; Stewart, Alexandre F. R.; Wells, George A.; Westra, Harm-Jan; Wolfs, Marcel G. M.; Clarke, Robert; Franzosi, Maria Grazia; Goel, Anuj; Hamsten, Anders; Lathrop, Mark; Peden, John F.; Seedorf, Udo; Watkins, Hugh; Ouwehand, Willem H.; Sambrook, Jennifer; Stephens, Jonathan; Casas, Juan-Pablo; Drenos, Fotios; Holmes, Michael V.; Kivimaki, Mika; Shah, Sonia; Shah, Tina; Talmud, Philippa J.; Whittaker, John; Wallace, Chris; Delles, Christian; Laan, Mans; Kuh, Diana; Humphries, Steve E.; Nyberg, Fredrik; Cusi, Daniele; Roberts, Robert; Newton-Cheh, Christopher; Franke, Lude; Stanton, Alice V.; Dominiczak, Anna F.; Farrall, Martin; Hingorani, Aroon D.; Samani, Nilesh J.; Caulfield, Mark J.; Munroe, Patricia B.

    2011-01-01

    Raised blood pressure (BP) is a major risk factor for cardiovascular disease. Previous studies have identified 47 distinct genetic variants robustly associated with BP, but collectively these explain only a few percent of the heritability for BP phenotypes. To find additional BP loci, we used a

  6. Research to Identify Effective Antifungal Agents, 1992 Annual Report.

    Energy Technology Data Exchange (ETDEWEB)

    Schreck, Carl

    1993-03-01

    This study is a continuation of ``Research to Identify Effective Antifungal Agents'' sponsored by Bonneville Power Administration (Schreck et al. 1990 and Schreck et al. 1991). The objectives of the present study were to select and evaluate up to 10 candidate fungicides.

  7. MetaPhinder-Identifying Bacteriophage Sequences in Metagenomic Data Sets

    DEFF Research Database (Denmark)

    Jurtz, Vanessa Isabell; Villarroel, Julia; Lund, Ole

    2016-01-01

    and understand them. Here we present MetaPhinder, a method to identify assembled genomic fragments (i.e. contigs) of phage origin in metage-nomic data sets. The method is based on a comparison to a database of whole genome bacteriophage sequences, integrating hits to multiple genomes to accomodate for the mosaic...

  8. Whole-Exome Sequencing Identifies Novel Variants for Tooth Agenesis.

    Science.gov (United States)

    Dinckan, N; Du, R; Petty, L E; Coban-Akdemir, Z; Jhangiani, S N; Paine, I; Baugh, E H; Erdem, A P; Kayserili, H; Doddapaneni, H; Hu, J; Muzny, D M; Boerwinkle, E; Gibbs, R A; Lupski, J R; Uyguner, Z O; Below, J E; Letra, A

    2018-01-01

    Tooth agenesis is a common craniofacial abnormality in humans and represents failure to develop 1 or more permanent teeth. Tooth agenesis is complex, and variations in about a dozen genes have been reported as contributing to the etiology. Here, we combined whole-exome sequencing, array-based genotyping, and linkage analysis to identify putative pathogenic variants in candidate disease genes for tooth agenesis in 10 multiplex Turkish families. Novel homozygous and heterozygous variants in LRP6, DKK1, LAMA3, and COL17A1 genes, as well as known variants in WNT10A, were identified as likely pathogenic in isolated tooth agenesis. Novel variants in KREMEN1 were identified as likely pathogenic in 2 families with suspected syndromic tooth agenesis. Variants in more than 1 gene were identified segregating with tooth agenesis in 2 families, suggesting oligogenic inheritance. Structural modeling of missense variants suggests deleterious effects to the encoded proteins. Functional analysis of an indel variant (c.3607+3_6del) in LRP6 suggested that the predicted resulting mRNA is subject to nonsense-mediated decay. Our results support a major role for WNT pathways genes in the etiology of tooth agenesis while revealing new candidate genes. Moreover, oligogenic cosegregation was suggestive for complex inheritance and potentially complex gene product interactions during development, contributing to improved understanding of the genetic etiology of familial tooth agenesis.

  9. Opportunistic Beacon Networks: Information Dissemination via Wireless Network Identifiers

    NARCIS (Netherlands)

    Türkes, Okan; Scholten, Johan; Havinga, Paul J.M.

    2016-01-01

    This paper presents OBN, a universal opportunistic ad hoc networking model particularly intended for smart mobile devices. It enables fast and lightweight data dissemination in wireless community networks through the utilization of universally-available wireless network identifiers. As a ubiquitous

  10. Identifying multiple submissions in Internet research: preserving data integrity.

    Science.gov (United States)

    Bowen, Anne M; Daniel, Candice M; Williams, Mark L; Baird, Grayson L

    2008-11-01

    Internet-based sexuality research with hidden populations has become increasingly popular. Respondent anonymity may encourage participation and lower social desirability, but associated disinhibition may promote multiple submissions, especially when incentives are offered. The goal of this study was to identify the usefulness of different variables for detecting multiple submissions from repeat responders and to explore incentive effects. The data included 1,900 submissions from a three-session Internet intervention with a pretest and three post-test questionnaires. Participants were men who have sex with men and incentives were offered to rural participants for completing each questionnaire. The final number of submissions included 1,273 "unique", 132 first submissions by "repeat responders" and 495 additional submissions by the "repeat responders" (N = 1,900). Four categories of repeat responders were identified: "infrequent" (2-5 submissions), "persistent" (6-10 submissions), "very persistent" (11-30 submissions), and "hackers" (more than 30 submissions). Internet Provider (IP) addresses, user names, and passwords were the most useful for identifying "infrequent" repeat responders. "Hackers" often varied their IP address and identifying information to prevent easy identification, but investigating the data for small variations in IP, using reverse telephone look up, and patterns across usernames and passwords were helpful. Incentives appeared to play a role in stimulating multiple submissions, especially from the more sophisticated "hackers". Finally, the web is ever evolving and it will be necessary to have good programmers and staff who evolve as fast as "hackers".

  11. Efficiently identifying deterministic real-time automata from labeled data

    NARCIS (Netherlands)

    Verwer, S.E.; De Weerdt, M.M.; Witteveen, C.

    2011-01-01

    We develop a novel learning algorithm RTI for identifying a deterministic real-time automaton (DRTA) from labeled time-stamped event sequences. The RTI algorithm is based on the current state of the art in deterministic finite-state automaton (DFA) identification, called evidence-driven

  12. Identifying Students’ Misconceptions on Basic Algorithmic Concepts Through Flowchart Analysis

    NARCIS (Netherlands)

    Rahimi, E.; Barendsen, E.; Henze, I.; Dagienė , V.; Hellas, A.

    2017-01-01

    In this paper, a flowchart-based approach to identifying secondary school students’ misconceptions (in a broad sense) on basic algorithm concepts is introduced. This approach uses student-generated flowcharts as the units of analysis and examines them against plan composition and

  13. Identifying potential themes for the Child Amblyopia Treatment Questionnaire.

    Science.gov (United States)

    Carlton, Jill

    2013-08-01

    Patient-reported outcome (PRO) instruments are increasingly common in both clinical practice and research. The data obtained from these instruments can be used to help inform decision making and policy-making decisions. The methodological approaches undertaken in developing PROs is not frequently reported. Literature on the development of the descriptive systems for PROs is sparse in comparison with that on the assessment of the psychometric properties of such instruments. The purpose of this study is to describe the results of qualitative interviews conducted to identify potential themes for the Child Amblyopia Treatment Questionnaire (CAT-QoL), a pediatric disease-specific health-related quality of life instrument for amblyopia designed for children aged 4 to 7 years. Semistructured interviews were undertaken with 59 children (aged 3 years 9 months to 9 years 11 months; average, 6 years 3 months) with amblyopia. The interviews were transcribed verbatim and imported into QSR NVivo 8. Interview transcripts were analyzed to identify potential items to be included in the descriptive system. Thematic content analysis was undertaken using Framework. Eleven potential themes were identified for inclusion in the CAT-QoL instrument, namely, physical sensation of the treatment, pain, being able to play with other children, how other children have treated them, ability to undertake schoolwork, ability to undertake other tasks, sad or unhappy, cross, worried, frustrated, and feelings toward family members. Children are able to identify their thoughts and opinions of their own health and to describe what impact their amblyopia treatment has had on their daily lives. Themes for the draft descriptive system for a pediatric self-reported amblyopia QoL instrument have been identified. A draft version of the CAT-QoL instrument has been developed. Further research is required to refine and assess the psychometric properties of the instrument.

  14. Identifying appropriate tasks for the preregistration year: modified Delphi technique

    Science.gov (United States)

    Stewart, Jane; O’Halloran, Catherine; Harrigan, Patrick; Spencer, John A; Barton, J Roger; Singleton, Stephen J

    1999-01-01

    Objectives To identify the tasks that should constitute the work of preregistration house officers to provide the basis for the development of a self evaluation instrument. Design Literature review and modified Delphi technique. Setting Northern Deanery within the Northern and Yorkshire office NHS executive. Subjects 67 educational supervisors of preregistration house officers. Main outcome measures Percentage of agreement by educational supervisors to tasks identified from the literature. Results Over 61% of communication items, 70% of on call patient care items, 75% of routine patient care items, 45% of practical procedure items, and over 63% of self management items achieved over 95% agreement that they should be part of the house job of preregistration house officers. Poor agreement was found for the laboratory and clinical investigations that house officers could perform with or without supervision. Conclusions The tasks of house officers were identified but issues in using this method and in devising a universally acceptable list of tasks for preregistration house officers were apparent. Key messagesMore than 100 activities were identified as potential tasks for house officers, and 11 personal abilities were identified as self management skillsThe ability of preregistration house officers to perform all of the tasks independently would be restricted by their experiences and therefore may depend on the specialty in which they workThe deliberation over what are and are not “shared tasks” was evident; some educational supervisors wanted the house officer to be capable of, but not practise, some tasks whereas others did not believe these tasks were within the remit of the house officerThe Delphi technique is a useful method for gaining the autonomous opinions of individuals from a large group of geographically distant members PMID:10417084

  15. Antifungal chemical compounds identified using a C. elegans pathogenicity assay.

    Directory of Open Access Journals (Sweden)

    Julia Breger

    2007-02-01

    Full Text Available There is an urgent need for the development of new antifungal agents. A facile in vivo model that evaluates libraries of chemical compounds could solve some of the main obstacles in current antifungal discovery. We show that Candida albicans, as well as other Candida species, are ingested by Caenorhabditis elegans and establish a persistent lethal infection in the C. elegans intestinal track. Importantly, key components of Candida pathogenesis in mammals, such as filament formation, are also involved in nematode killing. We devised a Candida-mediated C. elegans assay that allows high-throughput in vivo screening of chemical libraries for antifungal activities, while synchronously screening against toxic compounds. The assay is performed in liquid media using standard 96-well plate technology and allows the study of C. albicans in non-planktonic form. A screen of 1,266 compounds with known pharmaceutical activities identified 15 (approximately 1.2% that prolonged survival of C. albicans-infected nematodes and inhibited in vivo filamentation of C. albicans. Two compounds identified in the screen, caffeic acid phenethyl ester, a major active component of honeybee propolis, and the fluoroquinolone agent enoxacin exhibited antifungal activity in a murine model of candidiasis. The whole-animal C. elegans assay may help to study the molecular basis of C. albicans pathogenesis and identify antifungal compounds that most likely would not be identified by in vitro screens that target fungal growth. Compounds identified in the screen that affect the virulence of Candida in vivo can potentially be used as "probe compounds" and may have antifungal activity against other fungi.

  16. Postural control deficits identify lingering post-concussion neurological deficits

    Directory of Open Access Journals (Sweden)

    Thomas A. Buckley

    2016-03-01

    Full Text Available Concussion, or mild traumatic brain injury, incidence rates have reached epidemic levels and impaired postural control is a cardinal symptom. The purpose of this review is to provide an overview of the linear and non-linear assessments of post-concussion postural control. The current acute evaluation for concussion utilizes the subjective balance error scoring system (BESS to assess postural control. While the sensitivity of the overall test battery is high, the sensitivity of the BESS is unacceptably low and, with repeat administration, is unable to accurately identify recovery. Sophisticated measures of postural control, utilizing traditional linear assessments, have identified impairments in postural control well beyond BESS recovery. Both assessments of quiet stance and gait have identified lingering impairments for at least 1 month post-concussion. Recently, the application of non-linear metrics to concussion recovery have begun to receive limited attention with the most commonly utilized metric being approximate entropy (ApEn. ApEn, most commonly in the medial-lateral plane, has successfully identified impaired postural control in the acute post-concussion timeframe even when linear assessments of instrumented measures are equivalent to healthy pre-injury values; unfortunately these studies have not gone beyond the acute phase of recovery. One study has identified lingering deficits in postural control, utilizing Shannon and Renyi entropy metrics, which persist at least through clinical recovery and return to participation. Finally, limited evidence from two studies suggest that individuals with a previous history of a single concussion, even months or years prior, may display altered ApEn metrics. Overall, non-linear metrics provide a fertile area for future study to further the understanding of postural control impairments acutely post-concussion and address the current challenge of sensitive identification of recovery.

  17. Antibody Arrays Identify Potential Diagnostic Markers of Hepatocellular Carcinoma

    Directory of Open Access Journals (Sweden)

    Brian J. Peter

    2008-01-01

    Full Text Available Hepatocellular carcinoma (HCC is the third leading cause of cancer deaths worldwide. Effective treatment of HCC patients is hampered by the lack of sensitive and specific diagnostic markers of HCC. Alpha-fetoprotein (AFP, the currently used HCC marker, misses 30%–50% of HCC patients, who therefore remain undiagnosed and untreated. In order to identify novel diagnostic markers that can be used individually or in combination with AFP, we used an antibody array platform to detect the levels of candidate proteins in the plasma of HCC patients (n = 48 and patients with chronic hepatitis B or C viral infections (n = 19 (both of which are the major risk factors of HCC. We identified 7 proteins that significantly differentiate HCC patients from hepatitis patients (p < 0.05 (AFP, CTNNB, CSF1, SELL, IGFBP6, IL6R, and VCAM1.Importantly, we also identified 8 proteins that significantly differentiate HCC patients with ‘normal’ levels of AFP (<20 ng/ml from hepatitis patients (p < 0.05 (IL1RN, IFNG, CDKN1A, RETN, CXCL14, CTNNB, FGF2, and SELL. These markers are potentially important complementary markers to AFP. Using an independent immunoassay method in an independent group of 23 HCC patients and 22 hepatitis patients, we validated that plasma levels of CTNNB were significantly higher in the HCC group (p = 0.020. In conclusion, we used an antibody array platform to identify potential circulating diagnostic markers of HCC, some of which may be valuable when used in combination with AFP. The clinical utility of these newly identified HCC diagnostic markers needs to be systematically evaluated.

  18. Identifying acute coronary syndrome patients approaching end-of-life.

    Science.gov (United States)

    Fenning, Stephen; Woolcock, Rebecca; Haga, Kristin; Iqbal, Javaid; Fox, Keith A; Murray, Scott A; Denvir, Martin A

    2012-01-01

    Acute coronary syndrome (ACS) is common in patients approaching the end-of-life (EoL), but these patients rarely receive palliative care. We compared the utility of a palliative care prognostic tool (Gold Standards Framework (GSF)) and the Global Registry of Acute Coronary Events (GRACE) score, to help identify patients approaching EoL. 172 unselected consecutive patients with confirmed ACS admitted over an eight-week period were assessed using prognostic tools and followed up for 12 months. GSF criteria identified 40 (23%) patients suitable for EoL care while GRACE identified 32 (19%) patients with ≥ 10% risk of death within 6 months. Patients meeting GSF criteria were older (p = 0.006), had more comorbidities (1.6 ± 0.7 vs. 1.2 ± 0.9, p = 0.007), more frequent hospitalisations before (p = 0.001) and after (0.0001) their index admission, and were more likely to die during follow-up (GSF+ 20% vs GSF- 7%, p = 0.03). GRACE score was predictive of 12-month mortality (C-statistic 0.75) and this was improved by the addition of previous hospital admissions and previous history of stroke (C-statistic 0.88). This study has highlighted a potentially large number of ACS patients eligible for EoL care. GSF or GRACE could be used in the hospital setting to help identify these patients. GSF identifies ACS patients with more comorbidity and at increased risk of hospital readmission.

  19. Identifying acute coronary syndrome patients approaching end-of-life.

    Directory of Open Access Journals (Sweden)

    Stephen Fenning

    Full Text Available BACKGROUND: Acute coronary syndrome (ACS is common in patients approaching the end-of-life (EoL, but these patients rarely receive palliative care. We compared the utility of a palliative care prognostic tool (Gold Standards Framework (GSF and the Global Registry of Acute Coronary Events (GRACE score, to help identify patients approaching EoL. METHODS AND FINDINGS: 172 unselected consecutive patients with confirmed ACS admitted over an eight-week period were assessed using prognostic tools and followed up for 12 months. GSF criteria identified 40 (23% patients suitable for EoL care while GRACE identified 32 (19% patients with ≥ 10% risk of death within 6 months. Patients meeting GSF criteria were older (p = 0.006, had more comorbidities (1.6 ± 0.7 vs. 1.2 ± 0.9, p = 0.007, more frequent hospitalisations before (p = 0.001 and after (0.0001 their index admission, and were more likely to die during follow-up (GSF+ 20% vs GSF- 7%, p = 0.03. GRACE score was predictive of 12-month mortality (C-statistic 0.75 and this was improved by the addition of previous hospital admissions and previous history of stroke (C-statistic 0.88. CONCLUSIONS: This study has highlighted a potentially large number of ACS patients eligible for EoL care. GSF or GRACE could be used in the hospital setting to help identify these patients. GSF identifies ACS patients with more comorbidity and at increased risk of hospital readmission.

  20. No Exit: Identifying Avoidable Terminal Oncology Intensive Care Unit Hospitalizations.

    Science.gov (United States)

    Daly, Bobby; Hantel, Andrew; Wroblewski, Kristen; Balachandran, Jay S; Chow, Selina; DeBoer, Rebecca; Fleming, Gini F; Hahn, Olwen M; Kline, Justin; Liu, Hongtao; Patel, Bhakti K; Verma, Anshu; Witt, Leah J; Fukui, Mayumi; Kumar, Aditi; Howell, Michael D; Polite, Blase N

    2016-10-01

    Terminal oncology intensive care unit (ICU) hospitalizations are associated with high costs and inferior quality of care. This study identifies and characterizes potentially avoidable terminal admissions of oncology patients to ICUs. This was a retrospective case series of patients cared for in an academic medical center's ambulatory oncology practice who died in an ICU during July 1, 2012 to June 30, 2013. An oncologist, intensivist, and hospitalist reviewed each patient's electronic health record from 3 months preceding terminal hospitalization until death. The primary outcome was the proportion of terminal ICU hospitalizations identified as potentially avoidable by two or more reviewers. Univariate and multivariate analysis were performed to identify characteristics associated with avoidable terminal ICU hospitalizations. Seventy-two patients met inclusion criteria. The majority had solid tumor malignancies (71%), poor performance status (51%), and multiple encounters with the health care system. Despite high-intensity health care utilization, only 25% had documented advance directives. During a 4-day median ICU length of stay, 81% were intubated and 39% had cardiopulmonary resuscitation. Forty-seven percent of these hospitalizations were identified as potentially avoidable. Avoidable hospitalizations were associated with factors including: worse performance status before admission (median 2 v 1; P = .01), worse Charlson comorbidity score (median 8.5 v 7.0, P = .04), reason for hospitalization (P = .006), and number of prior hospitalizations (median 2 v 1; P = .05). Given the high frequency of avoidable terminal ICU hospitalizations, health care leaders should develop strategies to prospectively identify patients at high risk and formulate interventions to improve end-of-life care.