WorldWideScience

Sample records for atr kartini berdasarkan

  1. The current status of Kartini research reactor

    Energy Technology Data Exchange (ETDEWEB)

    Tri Wulan Tjiptono; Syarip

    1998-10-01

    The Kartini reactor reached the first criticality on January 25, 1979. In the first three years, the reactor power is limited up to 50 kW thermal power and on July 1, 1982 has been increased to 100 kW. It has been used as experiments facility by researcher of Atomic Energy National Agency and students of the Universities. Three beam tubes used as experiments facilities, the first, is used as a neutron source for H{sub 2}O-Natural Uranium Subcritical Assembly, the second, is developed for neutron radiography facility and the third, is used for gamma radiography facility. The other facilities are rotary rack and two pneumatic transfer systems, one for delayed neutron counting system and the other for the new Neutron Activation Analysis (NAA) facility. The rotary rack used for isotope production for NAA purpose (for long time irradiation), the delayed neutron counting system used for analysis the Uranium contents of the ores and the new NAA is provided for short live elements analysis. In the last three years the Reactor Division has a joint use program with the Nuclear Component and Engineering Center in research reactor instrumentation and control development. (author)

  2. Safety culture and quality management of Kartini research reactor

    Energy Technology Data Exchange (ETDEWEB)

    Syarip [Yogyakarta Nuclear Research Centre, Yogyakarta (Indonesia); Hauptmanns, Ulrich [Department of Plant Design and Safety, Otto-Von-Guericke-University, Magdeburg (Germany)

    1999-10-01

    The evaluation for assessing the safety culture and quality of safety management of Kartini research reactor is presented. The method is based on the concept of management control of safety (audit) as well as by using the developed method i.e. the questionnaires concerning areas of relevance which have to be answered with value statements. There are seven statements or qualifiers in answering the questions. Since such statements are vague, they are represented by fuzzy numbers. The weaknesses can be identified from the different areas contemplated. The evaluation result show that the quality of safety management of Kartini research reactor is globally rated as 'Average'. The operator behavior in the implementation of 'safety culture' concept is found as a weakness, therefore this area should be improved. (author)

  3. PENINGKATAN KEAKTIFAN SISWA DALAM PEMBELAJARAN SEJARAH KELAS XI IA SMA IBU KARTINI SEMARANG DENGAN METODE COOPERATIVE LEARNING

    Directory of Open Access Journals (Sweden)

    - Ba'in

    2010-04-01

    Full Text Available Pada penelitian ini masalah yang dibahas adalah (1 apakah dengan metode cooperative learning model STAD dalam pembelajaran sejarah dapat meningkatkan minat dan keaktifan siswa kelas XI IA 1 SMA Ibu Kartini Semarang tahun 2009/2010; (2 bagaimana respon siswa kelas XI IA 1 SMA Ibu Kartini Semarang tahun 2009/2010 terhadap pembelajaran sejarah dengan menggunakan metode cooperative learning model STAD? Penelitian ini bertujuan untuk mengetahui dapat tidaknya metode cooperative learning model STAD meningkatkan minat dan keaktifan siswa kelas XI IA 1 SMA Ibu Kartini Semarang tahun 2009/2010 dalam pembelajaran sejarah, dan respon siswa kelas XI IA 1 SMA Ibu Kartini Semarang tahun 2009/2010 terhadap pembelajaran sejarah. Subyek penelitian adalah siswa kelas XI IA 1 SMA Ibu Kartini Semarang tahun 2009/2010, guru mata pelajaran sejarah SMA Ibu Kartini, dan tim peneliti sebagai konsultas. Penelitian dilakukan dalam 2 (dua siklus, dan proses pembelajaran yang diteliti pada setiap silus meliputi perencaan, pelaksanaan dan refleksi. Hasil penelitian menunjukkan bahwa minat dan keaktifan siswa kelas XI IA 1 SMA Ibu Kartini Semarang tahun 2009/2010 dalam pembelajaran sejarah dengan menggunakan metode cooperative learning model STAD mengalami peningkatan, dari 22,50% pada pra siklus menjadi 69,91% pada sikulus 1 dan 80,00% pada siklus 2. Demikian pula untuk respon siswa, pembelajaran Sejarah di kelas XI IA 1 SMA Ibu Kartini Semarang dengan metode Cooperative Learning direspon positif oleh sebagian besar siswa.Kata Kunci: pembelajaran sejarah, metode Cooperative Learning, SMA Ibu Kartini

  4. PEMODELAN KOLIMATOR DI RADIAL BEAM PORT REAKTOR KARTINI UNTUK BORON NEUTRON CAPTURE THERAPY

    Directory of Open Access Journals (Sweden)

    Bemby Yulio Vallenry

    2015-03-01

    Full Text Available Salah satu metode terapi kanker adalah Boron Neutron Capture Therapy (BNCT. BNCT memanfaatkan tangkapan neutron oleh 10B yang terendapkan pada sel kanker. Keunggulan BNCT dibandingkan dengan terapi radiasi lainnya adalah tingkat selektivitas yang tinggi karena tingkatannya adalah sel. Pada penelitian ini dilakukan pemodelan kolimator di radial beamport reaktor Kartini sebagai dasar pemilihan material dan manufature kolimator sebagai sumber neutron untuk BNCT. Pemodelan ini dilakukan dengan simulasi menggunakan perangkat lunak Monte Carlo N-Particle versi 5 (MCNP 5. MCNP 5 adalah suatu paket program untuk memodelkan sekaligus menghitung masalah transpor partikel dengan mengikuti sejarah hidup neutron semenjak lahir, bertranspor pada bahan hingga akhirnya hilang karena mengalami reaksi penyerapan atau keluar dari sistem. Pemodelan ini menggunakan variasi material dan ukurannya agar menghasilkan nilai dari tiap parameter-parameter yang sesuai dengan rekomendasi I International Atomic Energy Agency (IAEA untuk BNCT, yaitu fluks neutron epitermal (Фepi > 9 n.cm-2.s-1, rasio antara laju dosis neutron cepat dan fluks neutron epitermal (Ḋf/Фepi 0,7. Berdasarkan hasil optimasi dari pemodelan ini, material dan ukuran penyusun kolimator yang didapatkan yaitu 0,75 cm Ni sebagai dinding kolimator, 22 cm Al sebagai moderator dan 4,5 cm Bi sebagai perisai gamma. Keluaran berkas radiasi yang dihasilkan dari pemodelan kolimator radial beamport yaitu Фepi = 5,25 x 106 n.cm-2s-1, Ḋf/Фepi =1,17 x 10-13 Gy.cm2.n-1, Ḋγ/Фepi = 1,70 x 10-12 Gy.cm2.n-1, Фth/Фepi = 1,51 dan J/Фepi = 0,731. Berdasarkan penelitian ini, hasil optimasi 5 parameter sebagai persyaratan kolimator untuk BNCT yang keluar dari radial beam port tidak sepenuhnya memenuhi kriteria yang direkomendasikan oleh IAEA sehingga perlu dilakukan penelitian lebih lanjut agar tercapainya persyaratan IAEA. Kata kunci: BNCT, radial beamport, MCNP 5, kolimator   One of the cancer therapy methods is

  5. Ageing investigation and upgrading of components/systems of Kartini research reactor

    Energy Technology Data Exchange (ETDEWEB)

    Syarip; Widi Setiawan [Yogyakarta Nuclear Research Centre, Yogyakarta (Indonesia)

    1998-10-01

    Kartini research reactor has been operated in good condition and has demonstrated successful operation for the past 18 years, utilized for: reactor kinetic and control studies, instrumentation tests, neutronic and thermohydraulic studies, routine neutron activation analysis, reactor safety studies, training for research reactor operators and supervisors, and reactor physics experiments. Several components of Kartini reactor use components from the abandoned IRT-2000 Project at Serpong and from Bandung Reactor Centre such as: reactor tank, reactor core, heat exchanger, motor blower for ventilation system, fuel elements, etc. To maintain a good operating performance and also for aging investigation purposes, the component failure data collection has been done. The method used is based on the Manual on Reliability Data Collection For Research Reactor PSAs, IAEA TECDOC 636, and analyzed by using Data Entry System (DES) computer code. Analysis result shows that the components/systems failure rate of Kartini reactor is around 1,5.10{sup -4} up to 2,8.10{sup -4} per hour, these values are within the ranges of the values indicated in IAEA TECDOC 478. Whereas from the analysis of irradiation history shows that the neutron fluence of fuel element with highest burn-up (2,05 gram U-235 in average) is around 1.04.10{sup 16} n Cm{sup -2} and this value is still far below its limiting value. Some reactor components/systems have been replaced and upgraded such as heat exchanger, instrumentation and control system (ICS), etc. The new reactor ICS was installed in 1994 which is designed as a distributed structure by using microprocessor based systems and bus system technology. The characteristic and operating performance of the new reactor ICS, as well as the operation history and improvement of the Kartini research reactor is presented. (J.P.N.)

  6. TIPOLOGI DAN KONSEP INTEGRASI PADA LINGKUNGAN BANGUNAN PENDIDIKAN DENGAN KARAKTER ARSITEKTUR KOLONIAL DI JALAN KARTINI KOTA SALATIGA

    Directory of Open Access Journals (Sweden)

    Sigit Ashar Setyoaji

    2015-12-01

    Full Text Available Bangunan cagar budaya adalah bangunan yang secara arsitektural memiliki kekhasan baik dari nilai arsitektural, estetika dan mewakili suatu simbol kebudayaan. Bangunan pendidikan di Jalan Kartini Salatiga merupakan sebuah komplek bangunan cagar budaya yang terdapat di Kota Salatiga, merupakan peninggalan kolonial Belanda, sehingga tidak mengherankan apabila bangunan tersebut memiliki karakter arsitektur kolonial yang membentuk identitas yang khas pada kawasan tersebut. Pembangunan selasar pendidikan di Jalan Kartini Kota Salatiga tidak terlepas dari status Kota Salatiga sebagai Kota Gemeente yang membuat Kota Salatiga maju dalam pembangunan fasilitas kotanya termasuk fasilitas pendidikan di Jalan Kartini yang diperuntukkan untuk orang pribumi. Perlu kiranya kini dilakukan sebuah studi mengenai tipologi dan konsep integrasi kawasan mengingat bangunan tersebut merupakan bangunan cagar budaya yang berada pada satu kawasan yang berdekatan, sebagai upaya peran aktif pelestarian bangunan cagar budaya dari segi akademis arsitektur. Untuk menjawab pertanyaan penelitian mengenai tipologi dan konsep integrasi pada kawasan bangunan pendidikan di Jalan Kartini Salatiga digunakan metode rekonstruksi baik secara bangunan maupun secara kawasan yang dilakukan dengan mencari data kesejarahan berupa foto maupun wawancara kepada narasumber yang kompeten. Dalam penelitian ini diketahui bahwa bangunan pendidikan di Jalan Kartini Salatiga merupakan tipologi bangunan arsitektur kolonial modern yang tidak memiliki integrasi dalam konsep penataan kawasannya.   [Title: Typologi and Integration Concept of Educational Building and Character of Colonial-based Architecture at Kartini’s Street Salatiga] Heritage building is a building that has a specific kind of architectural value, aesthetic and represent of cultural values. Educational buildings at Kartini street Salatiga is a complex of heritage buildings located in Salatiga, its a Dutch colonial heritage, so it is not

  7. A CONCEPTUAL DESIGN OF NEUTRON COLLIMATOR IN THE THERMAL COLUMN OF KARTINI RESEARCH REACTOR FOR IN VITRO AND IN VIVO TEST OF BORON NEUTRON CAPTURE THERAPY

    Directory of Open Access Journals (Sweden)

    Nina Fauziah

    2015-03-01

    Full Text Available Studies were carried out to design a collimator which results in epithermal neutron beam for IN VITRO and IN VIVO of Boron Neutron Capture Therapy (BNCT at the Kartini research reactor by means of Monte Carlo N-Particle (MCNP codes. Reactor within 100 kW of thermal power was used as the neutron source. The design criteria were based on recommendation from the International Atomic Energy Agency (IAEA. All materials used were varied in size, according to the value of mean free path for each material. MCNP simulations indicated that by using 5 cm thick of Ni as collimator wall, 60 cm thick of Al as moderator, 15 cm thick of 60Ni as filter, 2 cm thick of Bi as γ-ray shielding, 3 cm thick of 6Li2CO3-polyethylene as beam delimiter, with 1 to 5 cm varied aperture size, epithermal neutron beam with maximum flux of 7.65 x 108 n.cm-2.s-1 could be produced. The beam has minimum fast neutron and γ-ray components of, respectively, 1.76 x 10-13 Gy.cm2.n-1 and 1.32 x 10-13 Gy.cm2.n-1, minimum thermal neutron per epithermal neutron ratio of 0.008, and maximum directionality of 0.73. It did not fully pass the IAEA’s criteria, since the epithermal neutron flux was below the recommended value, 1.0 x 109 n.cm-2.s-1. Nonetheless, it was still usable with epithermal neutron flux exceeding 5.0 x 108 n.cm-2.s-1. When it was assumed that the graphite inside the thermal column was not discharged but only the part which was going to be replaced by the collimator, the performance of the collimator became better within the positive effect from the surrounding graphite that the beam resulted passed all criteria with epithermal neutron flux up to 1.68 x 109 n.cm-2.s-1. Keywords: design, collimator, epithermal neutron beam, BNCT, MCNP, criteria   Telah dilakukan penelitian tentang desain kolimator yang menghasilkan radiasi netron epitermal untuk uji in vitro dan in vivo pada Boron Neutron Capture Therapy (BNCT di Reaktor Riset Kartini dengan menggunakan program Monte

  8. Tingkat Kepatuhan Masyarakat dalam mengkonsumsi Obat yang Diresepkan oleh Dokter di Kelurahan Kartini Kotamadya Binjai Tahun 2010.

    OpenAIRE

    Van Anthony T

    2011-01-01

    Obedience is a patient behavior in accordance with the provisions provided by health professionals. Obedience of patients in treatment is one factor in the success of treatment, in addition to other factors, including the accurate diagnosis, the accuracy of drug selection, dosage and accuracy rules for granting and suggestive factors / beliefs of physicians and patients given the drug. The study was conducted in kartini village, Binjai municipality where similar research has never been done b...

  9. Atlantic Test Range (ATR)

    Data.gov (United States)

    Federal Laboratory Consortium — ATR controls fully-instrumented and integrated test ranges that provide full-service support for cradle-to-grave testing. Airspace and surface target areas are used...

  10. PENENTUAN KADAR RADIONUKLIDA PADA LIMBAH CAIR PABRIK GALVANIS DENGAN METODE ANALISIS AKTIVASI NEUTRON THERMAL REAKTOR KARTINI

    Directory of Open Access Journals (Sweden)

    P. Dwijananti

    2016-09-01

    Full Text Available Kadar unsur-unsur pada limbah cair pabrik galvanis perlu diketahui, hal ini penting dilakukan sebelum limbah cair pabrik galvanisdibuang ke lingkungan. MetodeAnalisis Aktivasi Neutron (AAN digunakan untuk analisis kualitatif dan kuantitatif. Metode kualitatifdapat mengetahui unsur yang terkandung, sedangkan analisis kuantitatif untuk mengetahui kadar unsurnya. Sampel limbah cairdiaktivasi menggunakan sumber neutron dari Reaktor Kartini, kemudian dicacah menggunakan spektrometri- , setelah itudianalisis secara kualitatif dan kuantitatif. Hasil analisis kualitatif teridentifikasi 7 unsur pada limbah cair pabrik galvanis. Unsurtersebut adalah Mangan (Mn, Zirkon (Zr, Chlorine (Cl, Seng(Zn, Bromine (Br, Natrium (Na, dan Besi (Fe. Analisis kuantitatifmenunjukkan kadar unsur tersebut yaitu : Mn (1,89 - 1,92.10-9gram/l, Zr (5,65 - 5,66.10-4gram/l, Cl (4,39 - 4,50.10-8 gram/l, Zn(6,47 - 6,65.10-5 gram/l, Br (1,32 -1,35.10-3gram/l, Na (4,18 - 4,19.10-4 gram/l, dan Fe (5,65.10-5 gram/l. Berdasarkanperhitungan dan setelah dibandingkan dengan baku mutu limbah dan baku mutu air, maka limbah cair pabrik galvanis dalam batasaman. The content of elements in liquid waste of galvanise factory are recommeded to be determined first before the waste is expelled intoenvironment. The Neutron Activation Analysis was used to have qualitative and quantitative analysis. The qualitative method wasused to identify the element contained,while the quantitative one was used to measure the decay rate of the element.Tified, thosewere Mangan (Mn, Zirkon (Zr, Chlorine (Cl, Zink (Zn, Bromine (Br, Sodium (Na and Ferrum (Fe. The quantitative analysisshows the content of each elements as follows. Mn (1.89 – 1.92 x 10-9 g/l; Zr (5.65 – 5.66 x 10-4 g/l; Cl (4.39 – 4.50 x 10-8 g/l; Zn(6.47 – 6.65 x 10-5 g/l, Br (1.32 – 1.35 x 10-3 g/l; Na (4.18 – 4.19 x 10-4 g/l, and Fe (5.65 x 10-5 g/l. Based on the calculation andafter comparing it to the

  11. ATR Power Supplies

    Energy Technology Data Exchange (ETDEWEB)

    Bruno, Don [Brookhaven National Lab. (BNL), Upton, NY (United States)

    1996-09-10

    The ATR (AGS to RHIC Transfer Line) is fed beam from two synchrotron rings. The first synchrotron ring is the Booster which receives protons from a 200MeV Linac and can achieve a proton energy of 1.5GeV. The Booster can also receive heavy ions from a 15.5MV Tandem Van de Graaff. The Booster is about 1/8 of a mile in circumference. The Booser then Feeds the AGS (Alternating Gradient Synchrotron) wich can achieve a proton energy of 29.5 Gev. The AGS is about 1/2 of a mile in circumference. The AGS then kicks the beam out to the ATR line which will eventually feed RHIC (Relativistic Heavy Ion Collider) beam starting with the sextant test in December of 1996. The ATR line is about 1/2 mile long. The ATR line is made up of the upgraded U-line, new W, X and Y lines (see Figure 1). The test in November and December of 1995 transported beam from the AGS to the end of the W-line into a beam stop. During the normal operation of RHIC there will be a switching magnet at the end of the W-line which will bend beam into the X-Line and then into the Y-line so that the two beams in RHIC will be rotating in opposite directions.

  12. PUREX new substation ATR

    Energy Technology Data Exchange (ETDEWEB)

    Nelson, D.E.

    1997-05-12

    This document is the acceptance test report (ATR) for the New PUREX Main and Minisubstations. It covers the factory and vendor acceptance and commissioning test reports. Reports are presented for the Main 5 kV substation building, the building fire system, switchgear, and vacuum breaker; the minisubstation control building and switch gear; commissioning test; electrical system and loads inspection; electrical utilities transformer and cable; and relay setting changes based on operational experience.

  13. ATR Performance Estimation Seed Program

    Science.gov (United States)

    2015-09-28

    19b. TELEPHONE NUMBER (Include area code) 09/28/2015 Research Performance Report July 2014 - June 2015 ATR Performance Estimation Seed Program Cook...Report: ATR Performance Estimation Seed Program Daniel A. Cook Georgia Tech Research Institute Sensors and Electromagnetic Applications Laboratory...term seed program to expand the Navy’s efforts in performance prediction for MCM. The team included individuals from ARL/PSU, APL-UW, GTRI, and NSWC

  14. Konsep Cantik pada Iklan Cetak Majalah Kartini Tahun 2014 dan Koran Kompas Tahun 1979: Suatu Analisis Semiotik

    Directory of Open Access Journals (Sweden)

    Dian Natashia

    2015-11-01

    Full Text Available Advertisements, which can be found in daily life, do not just function as the source of the product’s information, but can also create a new connotation about social reality. This research is intended to reveal the form of the connotation about present beauty of Indonesian women that are trying to be conveyed by the advertisers through present advertisements in Kartini magazines.  This research is also revealing elements that are used by the advertisers to attract readers’ attention. To see what are the new connotation that are formed in the present advertisements, they will be compared with advertisements in the older generation. This research is using qualitative descriptive method and the data is coming from the wordings that are printed in those advertisements. The data will be described and analyzed with Discourse of Advertising Theory by Guy Cook and Anchoring Connotation Theory by Roland Barthes, and then the result will be conclude. Through Guy’s theory, this research will reveal all the elements that are used by the producers to build the beauty concept. Through Barthes’ theory, this research will show how the advertisers create new connotation. The result of analysis shows that present beauty concept about ideal body is a beautiful body that are radiated from the outer side of the women’s body and good looking. Beautiful face is a face that looks as young as twenty years old girls. Moreover, the result also shows that producers use current social representative where consumers these days like new, instant products that give maximum result. The result also shows consumers’ doubt over unknown products and women’s fear on fat body and aging.

  15. ATR Spent Fuel Options Study

    Energy Technology Data Exchange (ETDEWEB)

    Connolly, Michael James [Idaho National Lab. (INL), Idaho Falls, ID (United States); Bean, Thomas E. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Brower, Jeffrey O. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Luke, Dale E. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Patterson, M. W. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Robb, Alan K. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Sindelar, Robert [Idaho National Lab. (INL), Idaho Falls, ID (United States); Smith, Rebecca E. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Tonc, Vincent F. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Tripp, Julia L. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Winston, Philip L. [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2017-01-01

    The Advanced Test Reactor (ATR) is a materials and fuels test nuclear reactor that performs irradiation services for the U.S. Department of Energy (DOE) Office of Nuclear Energy (NE), Naval Reactors, the National Nuclear Security Administration (NNSA), and other research programs. ATR achieved initial criticality in 1967 and is expected to operate in support of needed missions until the year 2050 or beyond. It is anticipated that ATR will generate approximately 105 spent nuclear fuel (SNF) elements per year through the year 2050. Idaho National Laboratory (INL) currently stores 2,008 ATR SNF elements in dry storage, 976 in wet storage, and expects to have 1,000 elements in wet storage before January 2017. A capability gap exists at INL for long-term (greater than the year 2050) management, in compliance with the Idaho Settlement Agreement (ISA), of ATR SNF until a monitored retrievable geological repository is open. INL has significant wet and dry storage capabilities that are owned by the DOE Office of Environmental Management (EM) and operated and managed by Fluor Idaho, which include the Idaho Nuclear Technology and Engineering Center’s (INTEC’s) CPP-666, CPP-749, and CPP-603. In addition, INL has other capabilities owned by DOE-NE and operated and managed by Battelle Energy Alliance, LLC (BEA), which are located at the Materials and Fuel Complex (MFC). Additional storage capabilities are located on the INL Site at the Naval Reactors Facility (NRF). Current INL SNF management planning, as defined in the Fluor Idaho contract, shows INTEC dry fuel storage, which is currently used for ATR SNF, will be nearly full after transfer of an additional 1,000 ATR SNF from wet storage. DOE-NE tasked BEA with identifying and analyzing options that have the potential to fulfill this capability gap. BEA assembled a team comprised of SNF management experts from Fluor Idaho, Savannah River Site (SRS), INL/BEA, and the MITRE Corp with an objective of developing and analyzing

  16. ATR Commissioning Software Task Force Report

    Energy Technology Data Exchange (ETDEWEB)

    D' Ottavio, Ted [Brookhaven National Lab. (BNL), Upton, NY (United States); Kewisch, Jorg [Brookhaven National Lab. (BNL), Upton, NY (United States); Saltmarsh, Chris [Brookhaven National Lab. (BNL), Upton, NY (United States); Sathe, Smita [Brookhaven National Lab. (BNL), Upton, NY (United States); Satogata, Todd [Brookhaven National Lab. (BNL), Upton, NY (United States); Shea, Don [Brookhaven National Lab. (BNL), Upton, NY (United States); Tepikian, Steve [Brookhaven National Lab. (BNL), Upton, NY (United States); Trahern, Garry [Brookhaven National Lab. (BNL), Upton, NY (United States)

    1994-12-16

    The Beam Injection Tests Software Task Force was charged with studying the software needed for the ATR tests, seen as a stepping stone or template for the larger scope of the full RHIC control system. This report outlines our avenues of exploration so far, presents the current analysis and implementation work in progress, and gives recommendations for the future on the ATR and longer time scales.

  17. Modification of Materials and Thickness Layer of Radial Piercing Beamport (RPB Reflector on Kartini Reactor for Boron Neutron Capture Therapy (BNCT

    Directory of Open Access Journals (Sweden)

    Octaviana Erawati F

    2015-12-01

    Full Text Available Modification of materials and thicknesses reflector RPB of Kartini reactor has been done to support cancer therapy with BNCT method. Modifications have been investigated by computer simulation method based on software MCNP5. Neutron beam for BNCT must be fulfill the criteria recommended by International Atomic Energy Agency (IAEA, two of which are  n.cm-2.s-1 and  . Before the modification of the neutron beam done, the measurements in the end of the RPB indicate that  n.cm-2.s-1 and  . These conditions were not fulfilling the requirements of the IAEA, so that the modification of the reflector material and thickness layer of RPB should be done. Those modifications were done by varying the materials PbF2, Pb-nat, 209Bi, Ni-nat (95% and Fe-nat. The simulation result showed if the material Ni-nat (95% on the thickness 1.5 cm was use as a coating material reflector optimally. The results after the modification showed that  increased 7,54% with the increase amounted to n.cm-2.s-1.  decrease 21,45%, then decreasing the value of       became 1,70.  After the modification the results has not yet fulfill the criteria of the IAEA. Because of the reflector was not the only guide neutron beam. Moderator and filter have not been optimized to deliver results for files that match the criteria of the IAEA for BNCT. Therefore, in future studies modified with the addition of a neutron moderator and also filter is expected to help increasing the quantity of  and decreasing of .

  18. Desain Jaringan WLAN Berdasarkan Cakupan Area dan Kapasitas

    Directory of Open Access Journals (Sweden)

    Zawiyah Saharuna

    2016-11-01

    Full Text Available Penelitian ini mengangkat kasus pada Kampus 2 Politeknik Negeri Ujung Pandang (PNUP yang belum memiliki fasilitas jaringan wireless, padahal pemanfaatannya sudah dimulai pada awal tahun ajaran 2015/2016. Berdasarkan kondisi tersebut, maka dibuat desain jaringan wireless yang mempertimbangkan cakupan area dan kapasitas. Hasil penelitian menunjukkan bahwa desain jaringan wireless berdasarkan cakupan area dibutuhkan 15 buah AP untuk JTE, 20 buah AP untuk JAK, dan 19 buah AP untuk JAN. Sedangkan untuk desain jaringan wireless berdasarkan cakupan area dan kapasitas dibutuhkan 20 buah AP untuk JTE, 25 buah AP untuk JAK, dan 25 buah AP untuk JAN. Hasil ini menunjukkan bahwa dalam perancangan penempatan AP pada Kampus 2 PNUP sebaiknya mempertimbangkan cakupan area dan kapasitas, karena rancangan yang mempertimbangkan cakupan area saja hanya dapat memenuhi 77,00% kebutuhan AP. Penelitian ini mengangkat kasus pada Kampus 2 Politeknik Negeri Ujung Pandang (PNUP yang belum memiliki fasilitas jaringan wireless, padahal pemanfaatannya sudah dimulai pada awal tahun ajaran 2015/2016. Berdasarkan kondisi tersebut, maka dibuat desain jaringan wireless yang mempertimbangkan cakupan area dan kapasitas. Hasil penelitian menunjukkan bahwa desain jaringan wireless berdasarkan cakupan area dibutuhkan 15 buah AP untuk JTE, 20 buah AP untuk JAK, dan 19 buah AP untuk JAN. Sedangkan untuk desain jaringan wireless berdasarkan cakupan area dan kapasitas dibutuhkan 20 buah AP untuk JTE, 25 buah AP untuk JAK, dan 25 buah AP untuk JAN. Hasil ini menunjukkan bahwa dalam perancangan penempatan AP pada Kampus 2 PNUP sebaiknya mempertimbangkan cakupan area dan kapasitas, karena rancangan yang mempertimbangkan cakupan area saja hanya dapat memenuhi 77,00% kebutuhan AP.

  19. MIR-ATR sensor for process monitoring

    Science.gov (United States)

    Geörg, Daniel; Schalk, Robert; Methner, Frank-Jürgen; Beuermann, Thomas

    2015-06-01

    A mid-infrared attenuated total reflectance (MIR-ATR) sensor has been developed for chemical reaction monitoring. The optical setup of the compact and low-priced sensor consists of an IR emitter as light source, a zinc selenide (ZnSe) ATR prism as boundary to the process, and four thermopile detectors, each equipped with an optical bandpass filter. The practical applicability was tested during esterification of ethanol and formic acid to ethyl formate and water as a model reaction with subsequent distillation. For reference analysis, a Fourier transform mid-infrared (FT-MIR) spectrometer with diamond ATR module was applied. On-line measurements using the MIR-ATR sensor and the FT-MIR spectrometer were performed in a bypass loop. The sensor was calibrated by multiple linear regression in order to link the measured absorbance in the four optical channels to the analyte concentrations. The analytical potential of the MIR-ATR sensor was demonstrated by simultaneous real-time monitoring of all four chemical substances involved in the esterification and distillation process. The temporal courses of the sensor signals are in accordance with the concentration values achieved by the commercial FT-MIR spectrometer. The standard error of prediction for ethanol, formic acid, ethyl formate, and water were 0.38 mol L  -  1, 0.48 mol L  -  1, 0.38 mol L  -  1, and 1.12 mol L  -  1, respectively. A procedure based on MIR spectra is presented to simulate the response characteristics of the sensor if the transmission ranges of the filters are varied. Using this tool analyte specific bandpass filters for a particular chemical reaction can be identified. By exchanging the optical filters, the sensor can be adapted to a wide range of processes in the chemical, pharmaceutical, and beverage industries.

  20. ATR promotes cilia signalling: links to developmental impacts.

    Science.gov (United States)

    Stiff, Tom; Casar Tena, Teresa; O'Driscoll, Mark; Jeggo, Penny A; Philipp, Melanie

    2016-04-15

    Mutations in ATR(ataxia telangiectasia and RAD3-related) cause Seckel syndrome (ATR-SS), a microcephalic primordial dwarfism disorder. Hitherto, the clinical manifestation of ATR deficiency has been attributed to its canonical role in DNA damage response signalling following replication fork stalling/collapse. Here, we show that ATR regulates cilia-dependent signalling in a manner that can be uncoupled from its function during replication. ATR-depleted or patient-derived ATR-SS cells form cilia of slightly reduced length but are dramatically impaired in cilia-dependent signalling functions, including growth factor and Sonic hedgehog signalling. To better understand the developmental impact of ATR loss of function, we also used zebrafish as a model. Zebrafish embryos depleted of Atr resembled ATR-SS morphology, showed a modest but statistically significant reduction in cilia length and other morphological features indicative of cilia dysfunction. Additionally, they displayed defects in left-right asymmetry including ambiguous expression of southpaw, incorrectly looped hearts and randomized localization of internal organs including the pancreas, features typically conferred by cilia dysfunction. Our findings reveal a novel role for ATR in cilia signalling distinct from its canonical function during replication and strengthen emerging links between cilia function and development. © The Author 2016. Published by Oxford University Press.

  1. Rationally Designed PI3Kα Mutants to Mimic ATR and Their Use to Understand Binding Specificity of ATR Inhibitors.

    Science.gov (United States)

    Lu, Yipin; Knapp, Mark; Crawford, Kenneth; Warne, Robert; Elling, Robert; Yan, Kelly; Doyle, Michael; Pardee, Gwynn; Zhang, Li; Ma, Sylvia; Mamo, Mulugeta; Ornelas, Elizabeth; Pan, Yue; Bussiere, Dirksen; Jansen, Johanna; Zaror, Isabel; Lai, Albert; Barsanti, Paul; Sim, Janet

    2017-06-02

    ATR, a protein kinase in the PIKK family, plays a critical role in the cell DNA-damage response and is an attractive anticancer drug target. Several potent and selective inhibitors of ATR have been reported showing significant antitumor efficacy, with most advanced ones entering clinical trials. However, due to the absence of an experimental ATR structure, the determinants contributing to ATR inhibitors' potency and specificity are not well understood. Here we present the mutations in the ATP-binding site of PI3Kα to progressively transform the pocket to mimic that of ATR. The generated PI3Kα mutants exhibit significantly improved affinity for selective ATR inhibitors in multiple chemical classes. Furthermore, we obtained the X-ray structures of the PI3Kα mutants in complex with the ATR inhibitors. The crystal structures together with the analysis on the inhibitor affinity profile elucidate the roles of individual amino acid residues in the binding of ATR inhibitors, offering key insights for the binding mechanism and revealing the structure features important for the specificity of ATR inhibitors. The ability to obtain structural and binding data for these PI3Kα mutants, together with their ATR-like inhibitor binding profiles, makes these chimeric PI3Kα proteins valuable model systems for structure-based inhibitor design. Copyright © 2017 The Author(s). Published by Elsevier Ltd.. All rights reserved.

  2. Cytoplasmic ATR Activation Promotes Vaccinia Virus Genome Replication

    Directory of Open Access Journals (Sweden)

    Antonio Postigo

    2017-05-01

    Full Text Available In contrast to most DNA viruses, poxviruses replicate their genomes in the cytoplasm without host involvement. We find that vaccinia virus induces cytoplasmic activation of ATR early during infection, before genome uncoating, which is unexpected because ATR plays a fundamental nuclear role in maintaining host genome integrity. ATR, RPA, INTS7, and Chk1 are recruited to cytoplasmic DNA viral factories, suggesting canonical ATR pathway activation. Consistent with this, pharmacological and RNAi-mediated inhibition of canonical ATR signaling suppresses genome replication. RPA and the sliding clamp PCNA interact with the viral polymerase E9 and are required for DNA replication. Moreover, the ATR activator TOPBP1 promotes genome replication and associates with the viral replisome component H5. Our study suggests that, in contrast to long-held beliefs, vaccinia recruits conserved components of the eukaryote DNA replication and repair machinery to amplify its genome in the host cytoplasm.

  3. Deteksi Iris Berdasarkan Metode Black Hole dan Circle Curve Fitting

    Directory of Open Access Journals (Sweden)

    Danny Kurnianto

    2013-11-01

    Full Text Available Sistem pengenalan identitas personal berdasarkan ciri biometrika adalah suatu sistem pengenalan seseorang berdasarkan pada ciri biometrika yang melekat pada orang tersebut. Iris mata merupakan salah satu ciri biometrik yang handal untuk sistem pengenalan identitas personal. Bagian sistem pengenalan identitas personal berdasarkan biometrik iris yang dianggap paling krusial adalah deteksi lokasi iris, karena akurasi deteksi iris berpengaruh pada tingkat akurasi sistem secara keseluruhan. Lokasi iris pada citra mata dibatasi oleh dua buah lingkaran yang memisahkan antara bagian iris  dengan pupil dan sklera. Telah banyak metodemetode yang diusulkan oleh para peneliti untuk menghasilkan deteksi lokasi iris dengan akurat dan cepat. Masalah akurasi, kecepatan waktu eksekusi dan ketahanan terhadap noise merupakan bidang penelitian yang menantang pada deteksi iris. Makalah ini menyajikan metode deteksi iris menggunakan metode black hole dan circle curve fitting. Langkah pertama, mencari batas dalam lingkaran iris yang memisahkan antara daerah iris dan pupil. Dengan metode black hole yang bekerja berdasarkan fakta bahwa lokasi pupil merupakan daerah  lingkaran yang paling hitam dan memiliki distribusi nilai intensitas yang seragam, maka lokasi pupil dapat ditentukan dengan teknik pengambangan. Batas lingkaran pupil dapat ditentukan dengan circle curve fitting dari parameter lingkaran daerah pupil. Langkah kedua,  mencari batas luar lingkaran iris yang memisahkan antara iris dan sklera. Peta tepi citra iris dicari dengan menggunakan deteksi tepi Canny, kemudian diambil satu komponen tepi arah vertikal yang dapat mewakili batas lingkaran luar iris. Dari komponen tepi tersebut, dihitung jari-jari iris yang berpusat di pusat pupil. Dengan jari-jari iris dan pusat iris maka dapat ditentukan batas luar iris menggunakan circle curve fitting

  4. KEKERABATAN TEMBAKAU MADURA (Nicotiana tabacum L. BERDASARKAN KARAKTER MOLEKULAR

    Directory of Open Access Journals (Sweden)

    Budi Daryono

    2015-09-01

    Full Text Available Hasil eksplorasi tembakau Madura di empat kabupaten Madura didapatkan 22 genotip tembakau Madura. Untuk merakit varietas tembakau yang diinginkan terlebih dahulu dilakukan karakterisasi plasma nutfah yang ada.  Karakterisasi berdasarkan karakter molekular merupakan salah satu langkah awal sebelum melakukan perakitan varietas tembakau untuk mengetahui potensi tembakau yang akan digunakan sebagai bahan persilangan. Tujuan penelitian adalah untuk mengidentifikasi variabilitas genetik dan hubungan kekerabatan plasma nutfah tembakau Madura berdasarkan karakter molekular dengan analisis RAPD.     Hasil penelitian dapat disimpulkan bahwa : (1 berdasarkan penanda RAPD menggunakan primer OPB-8, OPC-11,OPF-10, OPA-2 dan OPC-15, dapat membedakan genotip yang mempunyai keragaman geneik besar dan genotip yang mempunyai jarak genetik yang kecil, (2 Hasil dendogram menunjukkan bahwa tembakau Madura terdiri dari dua kluster yaitu kluster A terdiri dari 15 genotip dan Kluster B terdiridari 7 genotip, sedangkan buka busaang dan prancak-95 terpisah dengan tembakau Madura yang lain dengan jarak genetik 0.44 dan 0.50 dan (3  Calon tetua terbaik untuk mendapatkan varietas yang diinginkan adalah buka busaang dan prancak-95.Kata kunci :hubungan kekerabatan, tembakau madura, RAPD

  5. Kepemimpinan di Perpustakaan Berdasarkan Emotional Intellegience dalam Menghadapi Globalisasi Informasi

    Directory of Open Access Journals (Sweden)

    Miftahunnisa' Igiriza

    2017-06-01

    Full Text Available Pemimpin dalam sebuah kepemimpinan menjadi salah satu faktor maupun penghambat dari perkembangan organisasi dalam menghadapi fenomena perubahan yang kerap terjadi. Kemampuan kecerdasan emosional pemimpin memiliki peran yang penting bagi organisasi dan orang-orang yang bekerja pada organisasi tersebut. Tujuan penulisan ini yaitu untuk mengetahui bahwa kepemimpinan berdasarkan emotional intelligence dibutuhkan dalam gaya memimpin suatu organisasi seperti di perpustakaan yang menjadi pusat informasi. Artikel ini disusun berdasarkan studi literatur. Dapat diketahui, terjadinya globalisasi informasi, pola kepemimpinan yang baik di perpustakaan sangat dibutuhkan. Pola kepemimpinan berdasarkan emotional intelligence yang di dalamnya terdiri dari visioner, pembimbing, afiliatif, demokratis, penentu kecepatan, dan memerintah bisa menjadi pilihan pola kepemimpinan yang diterapkan di perpustakaan.  ABSTRACT Leader in a leadership became one of the factors as well as inhibiting the development of the organization in the face of the phenomenon of changes that often occur. Emotional intelligence abilities leaders have an important role for the organization and the people who work in these organizations. The purpose of this paper is to know that leadership is based on emotional intelligence needed to lead an organization like the style in which the library is a resource center. This article draws on literature studies. It can be seen, the globalization of information, a pattern of good leadership in the library is needed. The pattern of leadership based on the emotional intelligence of which consists of a visionary, coaching, affiliative, democratic, pacesetting, and commanding leadership style choice can be applied in the library.

  6. MODEL KESESUAIAN APLIKASI UNTUK GOVERNMENT BERDASARKAN BUDAYA ORGANISASI

    Directory of Open Access Journals (Sweden)

    Sri Handayaningsih

    2013-04-01

    Full Text Available Pengembangan E-Government pada sebuah Pemda ditopang oleh empat pilar yaitu kebijakan, kerangka peraturan, manajemen perubahan dan kebutuhan masyarakat. Proses bisnis pada dinas di pemda dan kebutuhan masyarakat terhadap dinas, memunculkan aplikasi yang dapat membantu proses bisnis dalam memberikan layanan pada masyarakat dan manajemen dalam internal dinas. Dalam banyak kasus pengembangan aplikasi pada Pemda tidak berdasarkan pada hal-hal seperti  proses bisnis yang dijalankan di dinas, budaya organisasi dan kebutuhan masyarakat sebagai konsumen namun hanya berdasarkan pada kebutuhan personal dan pemberian dari pusat. Hal ini mengakibatkan aplikasi yang dibangun tidak dapat bertahan lama, tidak dapat membantu seluruh kegiatan bisnis utama dinas dan dijalankan tidak sesuai dengan budaya organisasi yang sedang berjalan saat ini di dinas tersebut. Aplikasi yang harus dibangun dan dijalankan adalah 70% untuk kegiatan pelayanan pada masyarakat dan 30% manajemen organisasi. Pembuatan model kesesuai aplikasi pada sebuah dinas berdasarkan pada budaya yang sedang berjalan di dinas. Budaya organisasi yang berjalan saat ini di pemerintah provinsi DIY adalah budaya clan. Dasar dari kesesuaian aplikasi yang berjalan di sebuah dinas adalah rencana strategis jangka menengah (tahun 2009 s.d 2014. Model akan diukur dengan key performance indicator menggunakan acuan pada COBIT 4.1. Harapannya model dapat digunakan pada dinas di Provinsi DIY

  7. An add-on cap for ATR-IR spectroscopy studies

    DEFF Research Database (Denmark)

    2014-01-01

    The invention relates to a cap (300B) for an attenuated total reflectance infrared (ATR-IR) spectrometer, the ATR-IR spectrometer comprising an ATR-IR plate (200). The cap (300B) comprises an ATR- IR plate facing cap surface. When the ATR-IR plate facing cap surface is placed on the sample surface...

  8. HCLK2 is required for activity of the DNA damage response kinase ATR

    DEFF Research Database (Denmark)

    Rendtlew Danielsen, Jannie M; Larsen, Dorthe Helena; Schou, Kenneth Bødtker

    2008-01-01

    of ATR kinase activity. We show that HCLK2 forms a complex with ATR-ATRIP and the ATR activator TopBP1. We demonstrate that HCLK2-induced ATR kinase activity toward substrates requires TopBP1 and vice versa and provides evidence that HCLK2 facilitates efficient ATR-TopBP1 association. Consistent with its...... in the same pathway as TopBP1 but that the two proteins regulate different steps in ATR activation....

  9. Identifiksi Sebaran Litologi berdasarkan Analisis Data Resistivitas di Gunung Wungkal

    Directory of Open Access Journals (Sweden)

    Nurul Dzakiya

    2017-05-01

    Full Text Available Analisis data untuk mengidentifikasi sebaran litologi yang memiliki potensi bahan galian industri di Daerah Gunung Wungkal Yogyakarta dengan menggunakan metode resistivitas dan survei geologi permukaan telah dilakukan. Hasil korelasi kedua data tersebut menunjukkan sebaran litologi merupakan pelapukan intrusi batuan beku yang kemudian menghasilkan material lempung (6,0-10 m, lempung pasiran (11-30 m dan lapukan batuan diorit (30-55 m yang berada di kedalaman berbeda. Ketebalan batuan di permukaan sekitar 225-231 meter berdasarkan penampang peta geologi dengan arah sebaran dari Barat Laut hingga Tenggara. Proses pelapukan dan alterasi di daerah ini intensif (alterasi argilik dengan jenis morfologi perbukitan intrusi terdenudasi dan dataran Alluvial.

  10. ATR FTIR Mapping of Leather Fiber Panels

    Science.gov (United States)

    Tondi, G.; Grünewald, T.; Petutschnigg, A.; Schnabel, T.

    2015-01-01

    Leather fiber panels are very promising materials for many applications, not only for the easy availability of the constituents but also for their outstanding fi re-retardant properties. These innovative composite panels can be an excellent material for building insulation, and in recent times, the interest of industries in this composite board has considerably arisen. For this reason the discrimination of the components in the leather fiber panels is becoming fundamental in order to ensure their homogeneous properties. A method to characterize the surface of these materials is then required. An ATR FTIR mapping system for the leather fiber panels has been performed with a Perkin-Elmer microscope coupled with a Frontier FTIR spectrometer. The system has successfully allowed transforming the optical image to a chemical one. This technique can be considered as a right tool for routine controls of the surface quality, especially when the leather shavings cannot be optically distinguished.

  11. Encefalomenigocele atrésico parietal

    Directory of Open Access Journals (Sweden)

    Liliana Rivera Oliva

    2011-09-01

    Full Text Available El encefalocele es una anomalía congénita rara, en la que una porción del encéfalo protruye a través de un orificio craneal (evaginación, generalmente situado en la línea media. Clínicamente se caracteriza por una masa epicraneal, de consistencia blanda, muchas veces acompañada de trastornos psicomotores, convulsiones y trastornos de la visión. Se presenta el caso de un recién nacido con diagnóstico de encefalomeningocele atrésico parietal, intervenido quirúrgicamente y con evolución satisfactoria.

  12. ATR Prohibits Replication Catastrophe by Preventing Global Exhaustion of RPA

    DEFF Research Database (Denmark)

    Toledo Lazaro, Luis Ignacio; Altmeyer, Matthias; Rask, Maj-Britt

    2013-01-01

    origin firing generates an excess of single-stranded DNA that exhausts the nuclear pool of RPA. Partial reduction of RPA accelerated fork breakage, and forced elevation of RPA was sufficient to delay such "replication catastrophe" even in the absence of ATR activity. Conversely, unscheduled origin firing...... induced breakage of stalled forks even in cells with active ATR. Thus, ATR-mediated suppression of dormant origins shields active forks against irreversible breakage via preventing exhaustion of nuclear RPA. This study elucidates how replicating genomes avoid destabilizing DNA damage. Because cancer cells...

  13. LWRS ATR Irradiation Testing Readiness Status

    Energy Technology Data Exchange (ETDEWEB)

    Kristine Barrett

    2012-09-01

    The Light Water Reactor Sustainability (LWRS) Program was established by the U.S. Department of Energy Office of Nuclear Energy (DOE-NE) to develop technologies and other solutions that can improve the reliability, sustain the safety, and extend the life of the current reactors. The LWRS Program is divided into four R&D Pathways: (1) Materials Aging and Degradation; (2) Advanced Light Water Reactor Nuclear Fuels; (3) Advanced Instrumentation, Information and Control Systems; and (4) Risk-Informed Safety Margin Characterization. This report describes an irradiation testing readiness analysis in preparation of LWRS experiments for irradiation testing at the Idaho National Laboratory (INL) Advanced Test Reactor (ATR) under Pathway (2). The focus of the Advanced LWR Nuclear Fuels Pathway is to improve the scientific knowledge basis for understanding and predicting fundamental performance of advanced nuclear fuel and cladding in nuclear power plants during both nominal and off-nominal conditions. This information will be applied in the design and development of high-performance, high burn-up fuels with improved safety, cladding integrity, and improved nuclear fuel cycle economics

  14. ATR National Scientific User Facility 2009 Annual Report

    Energy Technology Data Exchange (ETDEWEB)

    Todd R. Allen; Mitchell K. Meyer; Frances Marshall; Mary Catherine Thelen; Jeff Benson

    2010-11-01

    This report describes activities of the ATR NSUF from FY-2008 through FY-2009 and includes information on partner facilities, calls for proposals, users week and education programs. The report also contains project information on university research projects that were awarded by ATR NSUF in the fiscal years 2008 & 2009. This research is university-proposed researcher under a user facility agreement. All intellectual property from these experiments belongs to the university per the user agreement.

  15. IDENTIFIKASI FITUR MELODI GENDING LANCARAN BERDASARKAN PENGENALAN POLA NOTASI

    Directory of Open Access Journals (Sweden)

    Arry Maulana Syarif

    2015-10-01

    Full Text Available Komposisi   gending   mempunyai   karakteristik   tersendiri. Terdapat kemiripan dalam rangkaian notasi di antara gending- gending. Penelitian ini bertujuan untuk mengidentifikasi pola notasi gending berdasarkan kemiripan antar-atributnya. Pasangan notasi ditentukan sebagai dasar analisis, dan algoritma apriori digunakan untuk menganalisis pasangan notasi dari sampel gending lancaran. Hasil yang dicapai dapat memetakan  dan  mengidentifikasi,  serta  memberikan  bobot nilai   ideal   untuk   merangkai   pasangan   notasi,   hingga merangkai gatra (1 gatra terdiri dari 4 notasi. Kata Kunci :pola notasi, apriori, gamelan, gending

  16. REKAYASA SISTEM KOMPUTER SEBAGAI ALAT BANTU AJAR BERDASARKAN TEORI KONSTRUKTIVISTIK

    Directory of Open Access Journals (Sweden)

    April Firman Daru

    2013-01-01

    Full Text Available Pola pembelajaran yang terjadi selama ini cenderung monoaktif. Pengajar terlalu mendominasi proses pembelajaran, sedangkan siswa diperlakukan sebagai objek yang harus disuapi (spoon-feeding. Beberapa mata pelajaran yang berkaitan dengan praktek mengalami masalah dengan metode ini. Hal ini dipersulit dengan terbatasnya sarana praktikum. Untuk beberapa mata pelajaran yang bertujuan mengasah ketrampilan siswa dibutuhkan proses belajar interaktif yang menitik beratkan pada praktikum dan dilakukan secara berulang-ulang. Proses belajar yang hanya dilakukan saat jam pelajaran tidak cukup membuat siswa memahami pelajaran dengan baik. Oleh sebab itu perlu dilakukan Rekayasa sistem komputer dengan analisis pembelajaran yang efektif berdasarkan pendekatan teori konstruktivistik agar diperoleh alat bantu ajar yang berfungsi sebagai suplemen dalam proses belajar mengajar. Penggunaan multimedia sebagai intructional media dalam pembelajaran dapat menjadi salah satu alternatif untuk memecahkan masalah tersebut

  17. Implementasi Ekstraksi Fitur untuk Pengelompokan Berkas Musik Berdasarkan Kemiripan Karakteristik Suara

    Directory of Open Access Journals (Sweden)

    Ramadhan Rosihadi Perdana

    2017-03-01

    Full Text Available Pengelompokkan musik berdasarkan karakteristik suara merupakan hal penting bagi penikmat musik.. Penikmat musik tidaklah mencari musik berdasarkan artis tetapi juga mencari musik berdasarkan genre yang diinginkannya. Karena itu dibutuhkan metode ekstraksi fitur yang tepat untuk dapat merepresentasikan berkas musik berdasarkan genre dengan baik. Studi ini melakukan ekstraksi fitur berkas musik. Dengan mengekstraksi fitur spectral centroid, spectral flux, spectral rolloff, dan short time energy pada tiap berkas musik yang diolah dan kemudian dihitung nilai mean, median, skewness, dan kurtosisnya. Dan selanjutnya dikelompokkan menggunakan metode klasifikasi Random Forest dengan alat bantu Weka untuk menguji kelayakan fitur yang dihasilkan. Uji coba dilakukan dengan menggunakan kombinasi nilai atribut komponen ekstraksi fitur dan berkas musik yang berbeda-beda sesuai genre. Hasil uji coba klasifikasi pada Studi ini menghasilkan nilai akurasi terbaik  sebesar 80.4%. 

  18. FLUX SENSOR EVALUATIONS AT THE ATR CRITICAL FACILITY

    Energy Technology Data Exchange (ETDEWEB)

    Troy Unruh; Joy Rempe; David Nigg; George Imel; Jason Harris; Eric Bonebrake

    2010-11-01

    The Advanced Test Reactor (ATR) and the ATR Critical (ATRC) facilities lack real-time methods for detecting thermal neutron flux and fission reaction rates for irradiation capsules. Direct measurements of the actual power deposited into a test are now possible without resorting to complicated correction factors. In addition, it is possible to directly measure minor actinide fission reaction rates and to provide time-dependent monitoring of the fission reaction rate or fast/thermal flux during transient testing. A joint Idaho State University /Idaho National Laboratory ATR National Scientific User Facility (ATR NSUF) project was recently initiated to evaluate new real-time state-of-the-art in-pile flux detection sensors. Initially, the project is comparing the accuracy, response time, and long duration performance of French Atomic Energy Commission (CEA)-developed miniature fission chambers, specialized self-powered neutron detectors (SPNDs) by the Argentinean National Energy Commission (CNEA), specially developed commercial SPNDs, and back-to-back fission (BTB) chambers developed by Argonne National Laboratory (ANL). As discussed in this paper, specialized fixturing and software was developed by INL to facilitate these joint ISU/INL evaluations. Calculations were performed by ISU to assess the performance of and reduce uncertainties in flux detection sensors and compare data obtained from these sensors with existing integral methods employed at the ATRC. Ultimately, project results will be used to select the detector that can provide the best online regional ATRC power measurement. It is anticipated that project results may offer the potential to increase the ATRC’s current power limit and its ability to perform low-level irradiation experiments. In addition, results from this effort will provide insights about the viability of using these detectors in the ATR. Hence, this effort complements current activities to improve ATR software tools, computational

  19. SISTEM PENDUKUNG KEPUTUSAN UNTUK PEMBORAN SUMUR MINYAK BERDASARKAN PERHITUNGAN EKONOMI

    Directory of Open Access Journals (Sweden)

    Herry Sofyan

    2010-01-01

    Full Text Available Oil represent one of nature resource which is not new but represent the solid industry of capital, technological solid and have the high risk. This matter need system of decision supporter capable to give the economics analysis needed by taker of decision or decision maker to analyse the prospect of development economics well of oil drilling so that can be made by a decision base of whether the oil well competent developed or not. Intention of this system is to give the amenity for user in taking decision of whether an developed competent oil well or not. Hence from that felt important to be designed and develop by system of decision supporter for the drilling of oilwell pursuant to economic calculation. In this system economics parameter used in the form of Net Present Value ( NPV, Rate Of Return ( ROR, Profit To Investment Ratio ( PEAR, and Pay Out Time ( POT. Methodologies used in develop this system method of Water Fall and this system will be develop to use the software Delphi 7.0. This system will give the output in the form of decision base whether competent oil well drilling project to be developed or not pursuant to its economics calculation. Minyak merupakan salah satu sumber daya alam yang tidak terbaharukan namun merupakan industri yang padat modal, padat teknologi dan mempunyai resiko yang tinggi. Hal ini memerlukan suatu sistem pendukung keputusan yang mampu memberikan analisa ekonomi yang diperlukan oleh pengambil keputusan atau decision maker untuk menganalisa prospek keekonomian pengembangan suatu sumur pemboran minyak sehingga dapat dijadikan dasar keputusan apakah sumur minyak tersebut layak dikembangkan atau tidak. Tujuan dari sistem ini adalah untuk memberikan kemudahan bagi user dalam mengambil keputusan apakah suatu sumur minyak layak dikembangkan atau tidak. Maka dari itu dirasa penting untuk dirancang dan dibangun sistem pendukung keputusan untuk pemboran sumur minyak berdasarkan perhitungan ekonomi. Dalam sistem ini

  20. PROFIL PENILAIAN HASIL BELAJAR SISWA BERDASARKAN KURIKULUM 2013

    Directory of Open Access Journals (Sweden)

    I Wayan Subagia

    2016-04-01

    Full Text Available Abstrak Penelitian ini bertujuan untuk mendeskripsikan profil penilaian hasil belajar siswa berdasarkan implementasi Kurikulum 2013. Penelitian ini merupakan penelitian deskriptif kualitatif dengan pendekatan fenomenologi. Subjek yang dilibatkan dalam penelitian ini adalah 15 orang guru yang terdiri atas guru SD, SMP, dan SMA, masing-masing lima orang. Data yang dibutuhkan untuk penelitian ini dikumpulkan dengan angket, dokumen, dan wawancara. Data yang diperoleh dianalisis secara deskriptif interpretatif. Hasil penelitian ini menunjukkan bahwa deskripsi profil penilaian hasil belajar siswa dilihat dari sembilan aspek penilaian, yaitu: ranah penilaian, pelaku penilaian, jenis alat penilaian, bentuk tes, bentuk nontest, bentuk laporan hasil belajar, skala penilaian, waktu penilaian, dan teknik pengumpulan hasil belajar. Dalam melakukan penilaian hasil belajar, guru mengalami beberapa masalah berkaitan dengan jumlah unsur penilaian, kompleksitas penilaian, pembuatan instrumen penilaian, pelaksanaan penilaian, dan pelaporan hasil penilaian. Berdasarkan temuan tersebut, disarankan agar penilaian hasil belajar siswa disederhanakan dan tetap memenuhi prinsip-prinsip penilaian, seperti komprehensif, objektif, transparan, dan akuntabel. Kata Kunci: penilaian, hasil belajar, dan kurikulum 2013. Abstract This research aimed at describing the profile of students’ learning achievement based on the implementation of 2013 Curriculum. This research was a qualitative descriptive research using phenomenological approach. The total subjects of this research were 15 teachers including five elementary school, junior high school, and senior high school, respectively. Questionnaire, document, and interview techniques were used to collect all data. Descriptive interpretive technique was used to analyse all data. The research results revealed that the description of the profiles of students’ learning achievement are viewed from nine evaluation aspects, namely

  1. PEMILIHAN KONTRASEPSI BERDASARKAN EFEK SAMPING PADA DUA KELOMPOK USIA REPRODUKSI

    Directory of Open Access Journals (Sweden)

    Erna Setiawati

    2017-07-01

    Full Text Available ABSTRACT Kelompok usia reproduksi terbagi dalam tiga fase yaitufase menunda kehamilan (30 tahun. Cara yang ditempuh yaitu dengan pemakaian kontrasepsi.baik  MKJPmaupunnon MKJP. Tujuan penelitian ini adalah untuk mengetahui ada atau tidak perbedaan pemilihan kontrasepsi MKJP dan non MKJP berdasarkan efek samping pada dua kelompok usia reproduksi. Penelitin ini menggunakan desain cross sectional, pengambilan data dengan kuesioner. Sampel dalam penelitian ini adalah akseptor KB baik MKJP maupun non MKJP pada bulan april sampai juni sebanyak 200 responden, dimana tekhnik pengambilan datanya dengan random sampling dan kuota sampling. Hasil penelitian kemudian diuji dengan mann-whitney test.Hasil penelitian dengan uji mann whitney test diperoleh p = 0.662 dengan kata lain p > α (0.05 yang berarti tidak ada perbedaan pemilihan MKJP dan non MKJP berdasarkan efek samping di Wilayah Kabupaten Semarang.      ABSTRACT Reproductive-age category can be divided into three groups which are the group of delayed interval pregnancy (less than 20 years old, the group of intervalcontrol pregnancy (20 to 30 years old, and the group of high risk pregnancy (more than 30 years old. An alternative to avoid high risk pregnancy is by using contraception tool namely long-term contraception (MKJP and non long-term contraception (non MKJP.The purpose of this research is to analysedwhether there are differences in choosing MKJP and non –MKJP based on side effects in the two reproductive-age groups.This research was an explanatory research with cross-sectional design. The population were all women of contraception acceptors in Semarang Regency.The samples were 200 respondents, used simple random sampling and quota sampling. This research used quisionaire instrument and analyze used mann whitney test (α=0,05. Theresult showed thatP = 0,662 meaning P > α = 0.05 which means there is no difference in choosing MKJP and non-MKJP based on side effects in the two reproduction

  2. Homeostatic regulation of meiotic DSB formation by ATM/ATR

    Energy Technology Data Exchange (ETDEWEB)

    Cooper, Tim J.; Wardell, Kayleigh; Garcia, Valerie; Neale, Matthew J., E-mail: m.neale@sussex.ac.uk

    2014-11-15

    Ataxia–telangiectasia mutated (ATM) and RAD3-related (ATR) are widely known as being central players in the mitotic DNA damage response (DDR), mounting responses to DNA double-strand breaks (DSBs) and single-stranded DNA (ssDNA) respectively. The DDR signalling cascade couples cell cycle control to damage-sensing and repair processes in order to prevent untimely cell cycle progression while damage still persists [1]. Both ATM/ATR are, however, also emerging as essential factors in the process of meiosis; a specialised cell cycle programme responsible for the formation of haploid gametes via two sequential nuclear divisions. Central to achieving accurate meiotic chromosome segregation is the introduction of numerous DSBs spread across the genome by the evolutionarily conserved enzyme, Spo11. This review seeks to explore and address how cells utilise ATM/ATR pathways to regulate Spo11-DSB formation, establish DSB homeostasis and ensure meiosis is completed unperturbed.

  3. Verifikasi Tanda Tangan Asli Atau Palsu Berdasarkan Sifat Keacakan (Entropi

    Directory of Open Access Journals (Sweden)

    Jaenal Arifin

    2017-02-01

    Full Text Available Tanda tangan merupakan penanda atau identitas yang ada pada suatu dokumen. Tanda tangan mempunyai peranan penting dalam memverifikasi dan melegalisasi dokumen. Tujuan dari penelitian ini menerapkan teknik pengolahan citra pada tanda tangan dan mengidentifikasi pola citra tanda tangan berdasarkan nilai entropi dan waktu perhitungan nilai entropi. Tahapan penelitian meliputi pengambilan data responden berupa tanda tangan citra analog, berikutnya akusisi citra tanda tangan digital dengan cara memindai tanda tangan tersebut, tahap selanjutnya mengkonversi citra tangan tangan digital dari true color menjadi binary. Tahap akhir melakukan perhitungan nilai entropi dan mencatat waktu perhitungan nilai entropi dengan menggunakan software matlab dan dilihat sebaran nilai entropi dari masing - masing citra tanda tangan. Sebaran nilai entropi pada tanda tangan asli mempunyai error 3,31% dari total responden (30 responden. Nilai error ini merupakan nilai entropi yang keluar dari kelompoknya. Waktu perhitungan nilai entropi pada tanda tangan palsu jika coretan atau piksel pada citra lebih besar dari citra tanda tangan asli maka waktu perhitungan nilai entropinya lebih lama dibandingkan dengan citra tanda tangan asli.

  4. Monitoring Theophylline Concentrations in Saline Using Terahertz ATR Spectroscopy

    Directory of Open Access Journals (Sweden)

    Kei Takeya

    2016-03-01

    Full Text Available To assess the possibility of terahertz technology for the determination of drug concentration in blood, we endeavored to apply a terahertz (THz attenuated total reflection (ATR method to measure the levels of theophylline in saline. A change in reflected THz wave amplitude was observed in a theophylline concentration-dependent manner. This result was obtained with simple measurements of comparisons of the amplitude of the reflected wave, and suggests that it is possible to monitor concentration changes of drugs in liquid material using THz ATR measurements.

  5. Skrining Sistematik terhadap Hiperkolesterolemia Familial pada Anak Berdasarkan Kriteria MedPed, Simon Brome Register Register dan Dutch Lipid Clinic

    Directory of Open Access Journals (Sweden)

    Titis Prawitasari

    2016-11-01

    Kesimpulan. Kriteria Dutch Lipid Clinicdapat lebih banyak mendeteksi kemungkinan anak yang mengalami HF berdasarkan riwayat orangtua mengalami penyakit jantung koroner dini dan hiperkolesterolemia dibandingkan kriteria lainnya.

  6. Optimasi Kualitas Akustik Room to Room Berdasarkan Nilai Transmission Loss

    Directory of Open Access Journals (Sweden)

    Fitri Rachmawati

    2013-09-01

    Full Text Available Kamar tidur merupakan salah satu fasilitas utama yang disediakan pada sebuah hotel. Fasilitas ini membutuhkan kenyamanan dan ruangan yang bersifat privasi dimana privasi berkaitan dengan aspek suara yaitu bising (noise. Tingkat kebisingan pada kamar harus diatur dengan adanya insulasi suara agar tidak mengganggu kenyamanan pengunjung saat beristirahat. Nilai insulasi ini dapat digambarkan dengan transmission loss dimana nilai ini dapat diubah menjadi suatu nilai tunggal yang disebut dengan weighted sound reduction index (Rw, DnTw yang mempunyai penambahan faktor koreksi suara frekuensi rendah (C, Ctr. Pada penelitian ini dilakukan insulasi suara pada kamar tidur hotel di Bandara Juanda dengan meninjau aspek dinding partisi untuk menahan kebisingan antar ruangan kamar tidur. Hotel pada penelitian ini merupakan hotel low budget dengan kamar yang minimalis dan ditujukan untuk awak pesawat atau penumpang pesawat yang sedang transit. Walaupun minimalis, tetap diperlukan insulasi suara pada kamar yang baik sehingga dilakukan optimasi dinding partisi dengan ketentuan nilai DnTw+Ctr > 51 dB. Pengukuran pada penelitian ini dilakukan di 5 titik dengan menggunakan SLM RION dan SOLO pada saat malam hari. Berdasarkan hasil pengukuran, diketahui bahwa dinding partisi existing belum memenuhi standar dengan nilai DnTw+Ctr sebesar 35,8 dB sehingga dilakukan perancangan ulang dinding partisi. Perancangan ini menggunakan material gypsum board dan cement board dengan variasi ketebalan material serta cavity yang berbeda. Hasil perancangan yang terbaik yaitu dinding dari material cement board 12,5 mm dengan spesifikasi double panels pada masing-masing sisi dan lebar cavity 70 mm dimana menghasilkan nilai DnTw+Ctr sebesar 52,9 dB. Dengan hasil tersebut, maka dinding partisi sudah memenuhi standar dan mempunyai kualitas insulasi suara yang baik.

  7. Validation of HELIOS for ATR Core Follow Analyses

    Energy Technology Data Exchange (ETDEWEB)

    Bays, Samuel E. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Swain, Emily T. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Crawford, Douglas S. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Nigg, David W. [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2015-03-01

    This work summarizes the validation analyses for the HELIOS code to support core design and safety assurance calculations of the Advanced Test Reactor (ATR). Past and current core safety assurance is performed by the PDQ-7 diffusion code; a state of the art reactor physics simulation tool from the nuclear industry’s earlier days. Over the past twenty years, improvements in computational speed have enabled the use of modern neutron transport methodologies to replace the role of diffusion theory for simulation of complex systems, such as the ATR. More exact methodologies have enabled a paradigm-shift away from highly tuned codes that force compliance with a bounding safety envelope, and towards codes regularly validated against routine measurements. To validate HELIOS, the 16 ATR operational cycles from late-2009 to present were modeled. The computed power distribution was compared against data collected by the ATR’s on-line power surveillance system. It was found that the ATR’s lobe-powers could be determined with ±10% accuracy. Also, the ATR’s cold startup shim configuration for each of these 16 cycles was estimated and compared against the reported critical position from the reactor log-book. HELIOS successfully predicted criticality within the tolerance set by the ATR startup procedure for 13 out of the 16 cycles. This is compared to 12 times for PDQ (without empirical adjustment). These findings, as well as other insights discussed in this report, suggest that HELIOS is highly suited for replacing PDQ for core safety assurance of the ATR. Furthermore, a modern verification and validation framework has been established that allows reactor and fuel performance data to be computed with a known degree of accuracy and stated uncertainty.

  8. TINJAUAN YURIDIS PENGALIHAN HAK KEKAYAAN INTELEKTUAL BERDASARKAN UNDANG-UNDANG DIBIDANG HAK KEKAYAAN INTELEKTUAL

    Directory of Open Access Journals (Sweden)

    Rilda Murniati

    2014-04-01

    Full Text Available Hak kekayaan intelektual dapat beralih dan dialihkan berdasarkan undang-undang dan perjanjian. Pengalihan HKI berdasarkan Undang-undang dilakukan dengan cara pewarisan, hibah, dan wasiat sedang pengalihan berdasarkan perjanjian dilakukan dengan cara lisensi. Hak atas HKI yang beralih karena pewarisan terjadi secara otomatis dari pemilik atau pemegang hak selaku pewaris kepada ahli warisnya. Hibah terjadi saat pemberi hibah dimasa hidupnya menyerahkan HKI kepada penerima hibah secara cuma-cuma sedangkan Wasiat terjadi saat pemberi wasiat meninggal dunia meninggal kan wasiat kepada penerima wasiat, pengalihan HKI dengan perjanjian lisensi harus dibuat dalam satu kesepakatan yang dituangkan dalam bentuk akta yang ditandatangani oleh pemberi dan penerima lisensi dan dilakukan dihadapan pejabat yang berwenang yaitu notaris atau dengan akta dibawah tangan untuk Hak Cipta

  9. Kajian Teologis Tentang Penyembahan Berdasarkan Injil Yohanes 4:24

    Directory of Open Access Journals (Sweden)

    Hengki Wijaya

    2015-03-01

    Full Text Available Tujuan penulisan artikel ini adalah mengetahui arti penyembahan berdasarkan Injil Yohanes 4:24, implikasi teologis tentang penyembahan, dan sikap dan cara menyembah Bapa dalam roh dan kebenaran. Penyembahan yang sejati menurut Alkitab adalah menyembah Allah yang benar di dalam roh yang diperbarui oleh Roh Kudus dan hidup sesuai dengan kebenaran Allah yaitu mengenal pribadi Yesus sebagai air hidup. Implikasi teologis biblika adalah Allah adalah Roh maka Allah harus disembah di dalam roh (batiniah yang diperbarui oleh Roh Kudus, dan bukan disembah secara lahiriah saja atau yang tampak secara jasmani. Allah saja yang harus disembah oleh manusia, tidak ada yang lain. Secara praktis orang percaya harus menyembah Allah dengan sikap yang benar dibarui oleh Roh Kudus dan hidup sesuai dengan kebenaran-Nya. Sikap penyembahan yang benar adalah sikap hati yang memuliakan Tuhan karena pengorbanan-Nya yang menyelamatkan di mana setiap orang percaya menyembah satu-satunya Juruselamat dan memberitakan-Nya dalam kehidupan orang percaya.The purpose of this article is to understand the meaning of worship based on John 4:24, the theological implication concerning worship and the attitudes and the manner of worshipping the Father in spirit and in truth. True worship from a biblical viewpoint is worshipping the true God with a spirit that is renewed by the Holy Spirit and living in accordance with the truth of God, that is, to know Jesus personally as the Living Water. The implication for biblical theology is that God is Spirit, so God is worshiped in spirit (the inner being that is renewed by the Holy Spirit, and not only worshiped outwardly, in a physical manner. It is God alone that should be worshiped by human beings, there is no other. In practice believers should worship God with a right attitude that is renewed by the Holy Spirit and live in concordance with His righteousness. The attitude of true worship is an attitude of the heart that glorifies the Lord

  10. EKUITAS MEREK JASA GERAI BUAH-BUAHAN BERDASARKAN PERSEPSI KONSUMEN

    Directory of Open Access Journals (Sweden)

    Erdiasa Nursaman

    2015-02-01

    Full Text Available The need of fruits and the number of fruit outlets in Jakarta has been increasing, therefore the study on brand equity of fruit outlet services according to consumer’s perception is now required. In detail the purpose of this study is to analyze the demographic characteristics of  fruits outlets consumer in Jakarta, analyzing the factors that affect brand equity of fruits outlets services, analyze the level of contribution of brand equity variables fruits outlets service in Jakarta and analyze the managerial implications to  fruits outlets brand. Structured questionnaires instrument was used for data collection, while Structural Equation Modeling (SEM method was used in data analysis. The study results have shown that demographic profile of respondents who visited fruit outlet were female, aged 31-40 years, have an undergraduate educational background, private employment and married. Some factors which may influence brand equity are brand loyalty and brand awareness. The brand equity of fruit outlets services is influenced by brand loyalty with contribution of 0.71 and brand awareness with contribution of 0.58. Managerial implication that should be done is to increase promotional activities through advertising. Keywords: brand equity, brand awareness, brand association, brand perceived quality, brand loyaltyABSTRAKLatar belakang dilaksanakannya penelitian ini adalah kebutuhan akan buah-buahan yang semakin meningkat dan makin bertambahnya gerai buah-buahan di Jakarta. Oleh karena itu, diperlukan penelitian ekuitas merek gerai buah-buahan berdasarkan persepsi konsumen. Secara terperinci tujuan penelitian ini menganalisis karakteristik demografi konsumen jasa gerai buah-buahan di Jakarta, menganalisis faktor-faktor yang memengaruhi ekuitas merek jasa layanan gerai buah-buahan, menganalisis tingkat kontribusi peubah-peubah ekuitas merek jasa gerai buah-buahan di Jakarta serta menganalisis implikasi manajerial untuk merek gerai buah-buahan yang

  11. Application of ATR-spectroscopy aboard landers: the MATROS experiment

    Science.gov (United States)

    Grigoriev, A.; Coradini, A.; Korablev, O.; Korzhenevskaya, T.; Korolev, Yu.; Gusev, M.; Garbuz, A.; Moshkin, E.; Piccioni, G.; Bellucci, G.; Dibs/Pasteur Team

    We propose to implement the technique of Attenuated Total Reflection (ATR) spectroscopy for in situ studies of planets and small bodies. This method is well-known in laboratory practice (especially in microbiological studies), but so far was not used in space. During descend in an atmosphere an ATR-spectrometer allows investigation of suspended particles -- both solid and liquid. After landing, it can be used for mineralogical studies; on potentially habitable bodies (Mars, Europe) ATR-spectroscopy can be focused on direct detection of living cells. The primary goal of Exo-Mars Pasteur program (2009) is the search for Martian life. We propose for Pasteur the MATROS (Martian Attenuated Total Reflection Optical Spectroscopy) investigation in synergy with DIBS (Drill-Integrated spectrometer) and MIMA (Infrared spectrometer) -- two experiments rated as ``very good'' during preliminary selection. MATROS will perform mineralogical analysis and search for primitive forms of Martian life. Soil samples will be provided from the drill's distribution system. MATROS' hardware consists of a dedicated Mineralogical-Biological Unit (MBU) with multiple hermetic lid and an internal source of radiation (micro-globar). The spectrum of this globar at the output of MATROS modified by ATR absorption will be analyzed by DIBS near infrared spectrometer (0.7-2.8 μ m) and by MIMA Fourier-spectrometer (2.5-20 μ m). Thus the ATR absorption spectra will be measured in the spectral range as wide as 0.7-20 μ m. The measuring sequence is as follows: first, MBU is sterilized by heating up to 100C or more. Then, a sample (actually a bit of mineral powder) will be put into the MBU and analyzed to obtain mineralogical information, including possibly the oxidation degree. After this, some water will be added, and a modification of the ATR spectrum may indicate the presence of clay minerals. Finally, we set up the conditions optimal for culturing of anaerobic autotrophic bacteria (proper temperature

  12. IDENTIFIKASI IKAN SAPU-SAPU (Loricariidae BERDASARKAN KARAKTER POLA ABDOMENDI PERAIRAN CILIWUNG

    Directory of Open Access Journals (Sweden)

    Fatihah Dinul Qoyyimah

    2016-06-01

    Full Text Available Ikan sapu-sapu (Loricariidae merupakan invasive species yang terdapat pada beberapa negara, salah satunyaIndonesia. Ikan tersebut dapat ditemukan pada sungai Ciliwung. Bagian hilir dari sungai tersebut adalah Kota Jakarta.Ikan sapu-sapu yang terdapat di Indonesia termasuk pada Genus Pterygoplichthys. Genus Pterygoplichthys masihsulit dibedakan berdasarkan karakter morfologi. Salah satu cara yang dapat dilakukan untuk mengidentifikasi ikantersebut adalah melihat pola abdomen. Sampel yang digunakan berjumlah 28 ekor. Identifikasi berdasarkan polaabdomen yang dapat dilakukan dengan melihat literatur yang ada. Hasil penelitian yang dilakukan menunjukkanterdapat 2 spesies ikan sapu-sapu pada sungai Ciliwung dan jenis inter-grade. Spesies tersebut adalah Pterygoplichthyspardalis dan Pterygoplichthys disjunctivus.

  13. IDENTIFIKASI IKAN SAPU-SAPU (Loricariidae BERDASARKAN KARAKTER POLA ABDOMENDI PERAIRAN CILIWUNG

    Directory of Open Access Journals (Sweden)

    Fatihah Dinul Qoyyimah

    2016-11-01

    Full Text Available Ikan sapu-sapu (Loricariidae merupakan invasive species yang terdapat pada beberapa negara, salah satunyaIndonesia. Ikan tersebut dapat ditemukan pada sungai Ciliwung. Bagian hilir dari sungai tersebut adalah Kota Jakarta.Ikan sapu-sapu yang terdapat di Indonesia termasuk pada Genus Pterygoplichthys. Genus Pterygoplichthys masihsulit dibedakan berdasarkan karakter morfologi. Salah satu cara yang dapat dilakukan untuk mengidentifikasi ikantersebut adalah melihat pola abdomen. Sampel yang digunakan berjumlah 28 ekor. Identifikasi berdasarkan polaabdomen yang dapat dilakukan dengan melihat literatur yang ada. Hasil penelitian yang dilakukan menunjukkanterdapat 2 spesies ikan sapu-sapu pada sungai Ciliwung dan jenis inter-grade. Spesies tersebut adalah Pterygoplichthyspardalis dan Pterygoplichthys disjunctivus.

  14. Activation of the ATR kinase by the RPA-binding protein ETAA1

    DEFF Research Database (Denmark)

    Haahr, Peter; Hoffmann, Saskia; Tollenaere, Maxim A X

    2016-01-01

    Activation of the ATR kinase following perturbations to DNA replication relies on a complex mechanism involving ATR recruitment to RPA-coated single-stranded DNA via its binding partner ATRIP and stimulation of ATR kinase activity by TopBP1. Here, we discovered an independent ATR activation pathway...... in vertebrates, mediated by the uncharacterized protein ETAA1 (Ewing's tumour-associated antigen 1). Human ETAA1 accumulates at DNA damage sites via dual RPA-binding motifs and promotes replication fork progression and integrity, ATR signalling and cell survival after genotoxic insults. Mechanistically......, this requires a conserved domain in ETAA1 that potently and directly stimulates ATR kinase activity independently of TopBP1. Simultaneous loss of ETAA1 and TopBP1 gives rise to synthetic lethality characterized by massive genome instability and abrogation of ATR-dependent signalling. Our findings demonstrate...

  15. Key features for ATA / ATR database design in missile systems

    Science.gov (United States)

    Özertem, Kemal Arda

    2017-05-01

    Automatic target acquisition (ATA) and automatic target recognition (ATR) are two vital tasks for missile systems, and having a robust detection and recognition algorithm is crucial for overall system performance. In order to have a robust target detection and recognition algorithm, an extensive image database is required. Automatic target recognition algorithms use the database of images in training and testing steps of algorithm. This directly affects the recognition performance, since the training accuracy is driven by the quality of the image database. In addition, the performance of an automatic target detection algorithm can be measured effectively by using an image database. There are two main ways for designing an ATA / ATR database. The first and easy way is by using a scene generator. A scene generator can model the objects by considering its material information, the atmospheric conditions, detector type and the territory. Designing image database by using a scene generator is inexpensive and it allows creating many different scenarios quickly and easily. However the major drawback of using a scene generator is its low fidelity, since the images are created virtually. The second and difficult way is designing it using real-world images. Designing image database with real-world images is a lot more costly and time consuming; however it offers high fidelity, which is critical for missile algorithms. In this paper, critical concepts in ATA / ATR database design with real-world images are discussed. Each concept is discussed in the perspective of ATA and ATR separately. For the implementation stage, some possible solutions and trade-offs for creating the database are proposed, and all proposed approaches are compared to each other with regards to their pros and cons.

  16. Recent ATR and fusion algorithm improvements for multiband sonar imagery

    Science.gov (United States)

    Aridgides, Tom; Fernández, Manuel

    2009-05-01

    An improved automatic target recognition processing string has been developed. The overall processing string consists of pre-processing, subimage adaptive clutter filtering, normalization, detection, data regularization, feature extraction, optimal subset feature selection, feature orthogonalization and classification processing blocks. The objects that are classified by the 3 distinct ATR strings are fused using the classification confidence values and their expansions as features, and using "summing" or log-likelihood-ratio-test (LLRT) based fusion rules. The utility of the overall processing strings and their fusion was demonstrated with new high-resolution three-frequency band sonar imagery. The ATR processing strings were individually tuned to the corresponding three-frequency band data, making use of the new processing improvement, data regularization; this improvement entails computing the input data mean, clipping the data to a multiple of its mean and scaling it, prior to feature extraction and resulted in a 3:1 reduction in false alarms. Two significant fusion algorithm improvements were made. First, a nonlinear exponential Box-Cox expansion (consisting of raising data to a to-be-determined power) feature LLRT fusion algorithm was developed. Second, a repeated application of a subset Box-Cox feature selection / feature orthogonalization / LLRT fusion block was utilized. It was shown that cascaded Box-Cox feature LLRT fusion of the ATR processing strings outperforms baseline "summing" and single-stage Box-Cox feature LLRT algorithms, yielding significant improvements over the best single ATR processing string results, and providing the capability to correctly call the majority of targets while maintaining a very low false alarm rate.

  17. Preliminary Discrimination of Butter Adulteration by ATR-FTIR Spectroscopy

    Directory of Open Access Journals (Sweden)

    Lucian Cuibus

    2015-05-01

    Full Text Available The Attenuated Total Reflectance-Fourier Transform Infrared Spectroscopy (ATR-FTIR  was applied for the discrimination of butter samples adulterated with solid fraction of palm oil. For FTIR fingerprinting of butter samples, with or without controlled additions of palm oil as adulterant was firstly obtained, using a Shimatsu Prestige 21 Spectrophotometer, including a horizontal diamond ATR accessory with reflection in the MIR region (3873-690 cm-1.The spiked butter samples including 0 level and seven increasing concentrations of palm fats, up to 50% were fingerprinted and the calibration curve was obtained (n=19. In parallel, the validation was realized using different set of spiked butter samples ranging 1-44.4 % of palm fat (n=7. Finally, an independent set of commercial samples was analized (n=14.Partial least squares (PLS model was used for statistical data processing in accordance with standard method. The value of the correlation coefficient (R2= 0.977 between actual and predicted values was statistically significant (p<0.001, considering the superposition of  "actual vs predicted” curves. This combined FTIR-PLS evaluation revealed that 3 out of  samples of butter were suspected of adulteration with palm oil, presented values 14 ranging 4-12%.In conclusion, ATR-FTIR methodology may offer an rapid evaluation of  butter samples authenticity. The low value for detection limit (3%palm oil in butter and the low limit of quantification (9.8% palm oil in butter confirms that ATR-FTIR spectroscopy  is a sensitive method to identify the adulteration of butter with  palm oil.   

  18. AGR-2 Data Qualification Report for ATR Cycle 154B

    Energy Technology Data Exchange (ETDEWEB)

    Binh Pham; Jeff Einerson

    2014-01-01

    This report provides the data qualification status of Advanced Gas Reactor-2 (AGR-2) fuel irradiation experimental data from Advanced Test Reactor (ATR) Cycle 154B as recorded in the Nuclear Data Management and Analysis System (NDMAS). This is the last cycle of AGR-2 irradiation, as the test train was pulled from the ATR core during the outage portion of ATR Cycle 155A. The AGR-2 data streams addressed in this report include thermocouple (TC) temperatures, sweep gas data (flow rates including new Fission Product Monitoring (FPM) downstream flows from Fission Product Monitoring System (FPMS) detectors, pressure, and moisture content), and FPMS data (release rates and release-to-birth rate ratios [R/Bs]) for each of the six capsules in the AGR-2 experiment. The final data qualification status for these data streams is determined by a Data Review Committee (DRC) comprised of AGR technical leads, Sitewide Quality Assurance (QA), and NDMAS analysts. The Data Review Committee reviewed the data acquisition process, considered whether the data met the requirements for data collection as specified in QA-approved Very High Temperature Reactor (VHTR) data collection plans, examined the results of NDMAS data testing and statistical analyses, and confirmed the qualification status of the data as given in this report.

  19. Natural convection heat transfer analysis of ATR fuel elements

    Energy Technology Data Exchange (ETDEWEB)

    Langerman, M.A.

    1992-05-01

    Natural convection air cooling of the Advanced Test Reactor (ATR) fuel assemblies is analyzed to determine the level of decay heat that can be removed without exceeding the melting temperature of the fuel. The study was conducted to assist in the level 2 PRA analysis of a hypothetical ATR water canal draining accident. The heat transfer process is characterized by a very low Rayleigh number (Ra {approx} 10{sup {minus}5}) and a high temperature ratio. Since neither data nor analytical models were available for Ra < 0.1, an analytical approach is presented based upon the integral boundary layer equations. All assumptions and simplifications are presented and assessed and two models are developed from similar foundations. In one model, the well-known Boussinesq approximations are employed, the results from which are used to assess the modeling philosophy through comparison to existing data and published analytical results. In the other model, the Boussinesq approximations are not used, thus making the model more general and applicable to the ATR analysis.

  20. Keterlaksanaan pembelajaran fisika implementasi kurikulum 2013 berdasarkan latar belakang akademik guru di MAN DIY

    OpenAIRE

    Ninik Uswatun Fadilah; Suparwoto Suparwoto

    2016-01-01

    Penelitian ini bertujuan untuk mengetahui keterlaksanaan pembelajaran fisika di MAN pilot project DIY dalam implementasi Kurikulum 2013 berdasarkan latar belakang akademik guru ditinjau dari (1) pemahaman terhadap Kurikulum 2013, (2) perencanaan, (3) pelaksanaan, (4) penilaian, (5) upaya yang dilakukan untuk meningkatkan pemahaman pada implementasi Kurikulum 2013 dan (6) hambatan yang dihadapi pada implementasi Kurikulum 2013. Jenis penelitian ini merupakan penelitian survei dengan pendekatan...

  1. Hubungan Hipertensi dan Penyakit Arteri Perifer Berdasarkan Nilai Ankle-Brachial Index

    Directory of Open Access Journals (Sweden)

    Tessa Thendria

    2014-06-01

    Full Text Available Penyakit arteri perifer (PAP merupakan penyakit vaskular yang memiliki morbiditas dan mortalitas yang tinggi. Pasien dengan PAP memiliki resiko tinggi menderita infark miokard, stroke iskemik dan kematian. Hipertensi merupakan salah satu faktor risiko PAP dan belum pernah dilakukan penelitian tentang hipertensi dan PAP di RSU Dokter Soedarso Pontianak. Penelitian ini bertujuan untuk mengetahui hubungan hipertensi dan PAP berdasarkan nilai ankle-brachialindex (ABI. Penelitian ini merupakan penelitian observasional dengan rancangan cross-sectional. Sebanyak 58 sampel penelitian dipilih dengan teknik consecutive sampling berdasarkan kriteria inklusi dan eksklusi. Data dikumpulkan dari wawancara, rekam medis, pemeriksaan tekanan darahdan ABI. Diagnosis PAP ditegakkan jika ditemukan nilai ABI ≤0,9 pada salah satu kaki. Prevalensi PAP pada pasien hipertensi ditemukan sebesar 21% (IK95% 11-31%. Kejadian PAP paling banyak ditemukan pada kelompok umur 60-69 tahun yakni sebesar 48%. Terdapat hubungan yang bermakna antara hipertensi dan PAP berdasarkan nilai ABI (p=0,000. Hipertensi berhubungan dengan penyakit arteri perifer berdasarkan nilai ankle-brachial index. Kata kunci: penyakit arteri perifer, faktor resiko, hipertensi, ankle-brachial index

  2. Immune Response of A Novel ATR-AP205-001 Conjugate Anti-hypertensive Vaccine.

    Science.gov (United States)

    Hu, Xiajun; Deng, Yihuan; Chen, Xiao; Zhou, Yanzhao; Zhang, Hongrong; Wu, Hailang; Yang, Shijun; Chen, Fen; Zhou, Zihua; Wang, Min; Qiu, Zhihua; Liao, Yuhua

    2017-10-03

    We developed a virus-like particle (VLP)-based therapeutic vaccine against angiotensin II receptor type 1, ATR-AP205-001, which could significantly reduce the blood pressure and protect target organs of hypertensive animals. In this study, we focused on the immunological effect and safety of the VLP-based vaccine. By comparing to the depolymerized dimeric vaccine ATR-Dimer-001, we found that ATR-AP205-001 reached subcapsular sinus of lymph node shortly after administration, followed by accumulation on follicle dendritic cells via follicle B cell transportation, while ATR-Dimer-001 vaccine showed no association with FDCs. ATR-AP205-001 vaccine strongly activated dendritic cells, which promoted T cells differentiation to follicular helper T cells. ATR-AP205-001 vaccine induced powerful germinal center reaction, which was translated to a boost of specific antibody production and long-lasting B cell memory, far superior to ATR-Dimer-001 vaccine. Moreover, neither cytotoxic T cells, nor Th1/Th17 cell-mediated inflammation was observed in ATR-AP205-001 vaccine, similar to ATR-Dimer-001 vaccine. We concluded that ATR-AP205-001 vaccine quickly induced potent humoral immunity through collaboration of B cells, follicular dendritic cells and follicular helper T cells, providing an effective and safe intervention for hypertension in the future clinical application.

  3. Transcriptional Regulation of the Daptomycin Gene Cluster in Streptomyces roseosporus by an Autoregulator, AtrA*

    Science.gov (United States)

    Mao, Xu-Ming; Luo, Shuai; Zhou, Ri-Cheng; Wang, Feng; Yu, Pin; Sun, Ning; Chen, Xiao-Xia; Tang, Yi; Li, Yong-Quan

    2015-01-01

    Daptomycin is a cyclic lipopeptide antibiotic produced by Streptomyces roseosporus. To reveal the transcriptional regulatory mechanism of daptomycin biosynthesis, we used the biotinylated dptE promoter (dptEp) as a probe to affinity isolate the dptEp-interactive protein AtrA, a TetR family transcriptional regulator, from the proteome of mycelia. AtrA bound directly to dptEp to positively regulate gene cluster expression and daptomycin production. Meanwhile, both ΔatrA and ΔadpA mutants showed bald phenotype and null production of daptomycin. AdpA positively regulated atrA expression by direct interaction with atrA promoter (atrAp), and removal of ArpA in S. roseosporus, a homolog of the A-factor receptor, resulted in accelerated morphological development and increased daptomycin production, suggesting that atrA was the target of AdpA to mediate the A-factor signaling pathway. Furthermore, AtrA was positively autoregulated by binding to its own promoter atrAp. Thus, for the first time at the transcriptional level, we have identified an autoregulator, AtrA, that directly mediates the A-factor signaling pathway to regulate the proper production of daptomycin. PMID:25648897

  4. Transcriptional regulation of the daptomycin gene cluster in Streptomyces roseosporus by an autoregulator, AtrA.

    Science.gov (United States)

    Mao, Xu-Ming; Luo, Shuai; Zhou, Ri-Cheng; Wang, Feng; Yu, Pin; Sun, Ning; Chen, Xiao-Xia; Tang, Yi; Li, Yong-Quan

    2015-03-20

    Daptomycin is a cyclic lipopeptide antibiotic produced by Streptomyces roseosporus. To reveal the transcriptional regulatory mechanism of daptomycin biosynthesis, we used the biotinylated dptE promoter (dptEp) as a probe to affinity isolate the dptEp-interactive protein AtrA, a TetR family transcriptional regulator, from the proteome of mycelia. AtrA bound directly to dptEp to positively regulate gene cluster expression and daptomycin production. Meanwhile, both ΔatrA and ΔadpA mutants showed bald phenotype and null production of daptomycin. AdpA positively regulated atrA expression by direct interaction with atrA promoter (atrAp), and removal of ArpA in S. roseosporus, a homolog of the A-factor receptor, resulted in accelerated morphological development and increased daptomycin production, suggesting that atrA was the target of AdpA to mediate the A-factor signaling pathway. Furthermore, AtrA was positively autoregulated by binding to its own promoter atrAp. Thus, for the first time at the transcriptional level, we have identified an autoregulator, AtrA, that directly mediates the A-factor signaling pathway to regulate the proper production of daptomycin. © 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

  5. Analysis of the ATR fuel element swaging process

    Energy Technology Data Exchange (ETDEWEB)

    Richins, W.D.; Miller, G.K.

    1995-12-01

    This report documents a detailed evaluation of the swaging process used to connect fuel plates to side plates in Advanced Test Reactor (ATR) fuel elements. The swaging is a mechanical process that begins with fitting a fuel plate into grooves in the side plates. Once a fuel plate is positioned, a lip on each of two side plate grooves is pressed into the fuel plate using swaging wheels to form the joints. Each connection must have a specified strength (measured in terms, of a pullout force capacity) to assure that these joints do not fail during reactor operation. The purpose of this study is to analyze the swaging process and associated procedural controls, and to provide recommendations to assure that the manufacturing process produces swaged connections that meet the minimum strength requirement. The current fuel element manufacturer, Babcock and Wilcox (B&W) of Lynchburg, Virginia, follows established procedures that include quality inspections and process controls in swaging these connections. The procedures have been approved by Lockheed Martin Idaho Technologies and are designed to assure repeatability of the process and structural integrity of each joint. Prior to July 1994, ATR fuel elements were placed in the Hydraulic Test Facility (HTF) at the Idaho National Engineering Laboratory (AGNAIL), Test Reactor Area (TRA) for application of Boehmite (an aluminum oxide) film and for checking structural integrity before placement of the elements into the ATR. The results presented in this report demonstrate that the pullout strength of the swaged connections is assured by the current manufacturing process (with several recommended enhancements) without the need for- testing each element in the HTF.

  6. Mislocalization of the MRN complex prevents ATR signaling during adenovirus infection

    DEFF Research Database (Denmark)

    Carson, Christian T; Orazio, Nicole I; Lee, Darwin V

    2009-01-01

    The protein kinases ataxia-telangiectasia mutated (ATM) and ATM-Rad3 related (ATR) are activated in response to DNA damage, genotoxic stress and virus infections. Here we show that during infection with wild-type adenovirus, ATR and its cofactors RPA32, ATRIP and TopBP1 accumulate at viral...... during virus infection, which is independent of Mre11 nuclease activity and recruitment of RPA/ATR/ATRIP/TopBP1. Unlike other damage scenarios, we found that ATM and ATR signaling are not dependent on each other during infection. We identify a region of the viral E4orf3 protein responsible...

  7. ATR Kinase Inhibition Protects Non-cycling Cells from the Lethal Effects of DNA Damage and Transcription Stress*

    Science.gov (United States)

    Kemp, Michael G.; Sancar, Aziz

    2016-01-01

    ATR (ataxia telangiectasia and Rad-3-related) is a protein kinase that maintains genome stability and halts cell cycle phase transitions in response to DNA lesions that block DNA polymerase movement. These DNA replication-associated features of ATR function have led to the emergence of ATR kinase inhibitors as potential adjuvants for DNA-damaging cancer chemotherapeutics. However, whether ATR affects the genotoxic stress response in non-replicating, non-cycling cells is currently unknown. We therefore used chemical inhibition of ATR kinase activity to examine the role of ATR in quiescent human cells. Although ATR inhibition had no obvious effects on the viability of non-cycling cells, inhibition of ATR partially protected non-replicating cells from the lethal effects of UV and UV mimetics. Analyses of various DNA damage response signaling pathways demonstrated that ATR inhibition reduced the activation of apoptotic signaling by these agents in non-cycling cells. The pro-apoptosis/cell death function of ATR is likely due to transcription stress because the lethal effects of compounds that block RNA polymerase movement were reduced in the presence of an ATR inhibitor. These results therefore suggest that whereas DNA polymerase stalling at DNA lesions activates ATR to protect cell viability and prevent apoptosis, the stalling of RNA polymerases instead activates ATR to induce an apoptotic form of cell death in non-cycling cells. These results have important implications regarding the use of ATR inhibitors in cancer chemotherapy regimens. PMID:26940878

  8. UCSB ATR-­NSUF Irradiation DMC Sample Inspection Report

    Energy Technology Data Exchange (ETDEWEB)

    Saleh, Tarik A. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Quintana, Matthew Estevan [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Romero, Tobias J. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2015-02-23

    A variety of tensile samples of Ferritic and Oxide Dispersion Strengthened (ODS or nanoferritic) steels were placed the ATR reactor over 2 Years achieving doses of roughly 4-6 dpa at temperatures of roughly 290°C. After irradiation, samples were shipped from the MFC hot cells at Idaho National Laboratory (INL) to the Wing 9 hot cells in the CMR facility at Los Alamos National Laboratory. Samples were cleaned to removed alpha contamination from the MFC hot cells, and then, as needed removed from their irradiation containers, sorted and inspected. This report will summarize the inspection of the Disc Multipurpose Coupon (DMC) inspection from packet 7-1.

  9. The role of ATR kinase during mammalian gametogenesis

    OpenAIRE

    Pacheco Piñol, Sarai

    2015-01-01

    ATR és una proteïna cinasa essencial per a la viabilitat cel·lular que participa en els mecanismes de resposta al dany en el DNA per tal de mantenir la integritat del genoma. Aquesta proteïna es activada en resposta a regions de cadena simple del DNA (ssDNA) generades per la resecció dels trencaments de doble cadena (DSBs) i controla la progressió de les forques de replicació durant la fase S del cicle cel·lular. Durant la meiosi, un tipus de divisió cel·lular especialitzada per la qual les c...

  10. PENGAWASAN, EVALUASI, DAN PENILAIAN SISTEM PENGENDALIAN INTERNAL TERKAIT BILLING SYSTEM PADA RSUD UNGARAN BERDASARKAN KERANGKA KERJA COBIT 5 (MEA02)

    National Research Council Canada - National Science Library

    Marthania Firmadita; Wellia Shinta Sari

    2016-01-01

    ... keefektifan implementasi layanan. Dari hasil observasi, wawancara, dan kuesioner berdasarkan COBIT 5 dihasilkan level kapabilitas tata kelola proses pengawasan, evaluasi, dan penilaian pengendalian internal terkait billing system (MEA02...

  11. Analisis Hasil Filtering Karous-Hjelt Berdasarkan Beda Spasi Dalam Penggambaran Struktur Bawah Permukaan Tanah

    Directory of Open Access Journals (Sweden)

    Miftakhul Maulidina

    2017-04-01

    Full Text Available Struktur penyusun tanah di setiap wilayah dapat digambarkan melalui pemodelan berdasarkan nilai resistivitas material penyusunnya. Tujuan penelitian ini membuat penggambaran struktur bawah permukaan tanah melalui filtering Karous-Hjelt dengan variasi spasi. Adapun spasi dalam pengambilan data di lapangan adalah spasi 1 meter dan spasi 0,5 meter pada masing-masing line. Penelitian ini sekaligus melengkapi hasil penelitian sebelumnya tentang penentuan struktur bawah permukaan tanah di sekitar Candi Gambar Wetan (Maulidina, 2015. Data yang dimasukkan merupakan data hasil pengukuran Very Low Frequency Electromagnetic di area Candi Gambar Wetan. Metode yang digunakan yaitu pengolahan data menggunakan filtering Karous-Hjelt untuk penggambaran struktur bawah permukaan tanah pada kedalaman 0 – 6 meter untuk dua jenis data berdasarkan variasi spasi. Hasil pengolahan menunjukkan penggambaran struktur bawah permukaan tanah spasi 0,5 m memiliki rentang nilai resistivitas yang lebih mendetail dibandingkan spasi 1 m. Hasil ini dapat menambah informasi dan bisa digunakan sebagai acuan dalam penelitian berikutnya.

  12. Rancang Bangun Aplikasi Mobile Rekomendasi Layanan Kesehatan Berdasarkan Lokasi Pengguna Memanfaatkan Google Place

    Directory of Open Access Journals (Sweden)

    Stefanus Candra Kusuma Wardana

    2017-01-01

    Full Text Available Banyaknya layanan kesehatan yang tersebar di berbagai pelosok daerah membuat masyarakat dimudahkan untuk mendapatkan jaminan kesehatan yang layak. Akan tetapi banyak masyarakat yang terpaku kepada nama besar suatu instansi kesehatan. Karena terlalu ramai dan padat suatu instansi kesehatan yang mempunyai nama besar, maka banya masyarakat yang terlambat mendapatkan layanan kesehatan. Untuk membantu masyarakat mendapatkan dan menemukan layanan kesehatan yang sesuai dengan kebutuhan pasien, dibuatlah aplikasi yang memberikan rekomendasi layanan kesehatan yang didalamnya juga terdapat pencarian layanan kesehatan berdasarkan lokasi. Metode yang digunakan untuk memberikan rekomendasi adalah metode Cosine Similarity. Aplikasi ini dibangun dengan menggunakan platfrom Android sehingga pengguna dimudahkan dalam penggunaannya. Cosine Similarity digunakan untuk memberikan rekomendasi berdasarkan kemiripan dokumen kata kunci pencarian dengan database server. Semakin banyak tingkat kemiripan maka nilai rekomendasi semakin tinggi. Pada rekomendasi ditambahkan fitur Google Maps dan Google Place untuk memberikan peta digital serta untuk menentukan layanan yang ada disekitar pengguna.

  13. DATA MINING UNTUK MEMPREDIKSI PRESTASI SISWA BERDASARKAN SOSIAL EKONOMI, MOTIVASI, KEDISIPLINAN DAN PRESTASI MASA LALU

    Directory of Open Access Journals (Sweden)

    Heri Susanto

    2014-06-01

    Full Text Available Penelitian ini bertujuan untuk membuat prediksi prestasi belajar siswa berdasarkan status sosial ekonomi orang tua, motivasi, kedisiplinan siswa dan prestasi masa lalu menggunakan metode data mining dengan algoritma J48.  Sebagai perbandingan, data penelitian dianalisis juga dengan CHAID (Chi Squared Automatic Interaction Detection dan regresi ganda. Pendekatan penelitian yang digunakan adalah kuantitatif. Subyek penelitian ini adalah siswa tingkat X SMK Negeri 4 Surakarta berjumlah 416 siswa. Teknik pengumpulan data yang digunakan adalah dokumentasi dan angket. Hasil penelitian menunjukkan bahwa analisis prediksi menggunakan decision tree algoritma J48 memiliki akurasi sebesar 95,7%, sedangkan analisis prediksi menggunakan CHAID memiliki tingat akurasi 82,1% dan analisis regresi ganda menghasilkan tingkat signifikansi sebesar 90,6%. Berdasarkan hasil tersebut bisa disimpulkan bahwa metode J48 lebih baik dibandingkan dengan metode CHAID dan regresi ganda.Kata kunci: data mining

  14. KUALITAS AIR SUMUR DESA BANTARAN SUNGAI BENGAWAN SOLO BERDASARKAN ASPEK KEMASYARAKATAN DAN STANDAR MENTERI KESEHATAN

    Directory of Open Access Journals (Sweden)

    Beti Cahyaning Astuti

    2015-04-01

    Air merupakan salah satu kebutuhan dasar bagi kehidupan manusia, sehingga kualitas air menjadi suatu perhatian yang sungguh-sungguh. Pencemaran dalam kadar sangat sedikit pada air tidak diperbolehkan sama sekali. Penelitian ini bertujuan untuk mengkaji kondisi kualitas air sumur di desa bantaran Sungai Bengawan Solo Kecamatan Masaran Kabupaten Sragen Propinsi Jawa Tengah, dan mengkaji pengetahuan masyarakat tentang air bersih. Kualitas air sumur dikaji berdasarkan pengetahuan masyarakat dan dianalisis dengan parameter fisika, kimia, dan mikrobiologi, berdasarkan Peraturan Menteri Kesehatan Republik Indonesia Nomor 416/Menkes/ Per/IX/1990 tentang Syarat-syarat dan Pengawasan Kualitas Air Bersih. Hasil penelitian menunjukkan bahwa kualitas air sumur enam desa di bantaran Sungai Bengawan Solo Kecamatan Masaran Kabupaten Sragen Propinsi Jawa Tengah tidak memenuhi syarat baku mutu untuk air bersih.

  15. IDENTIFIKASI EMOSI BERDASARKAN ACTION UNIT MENGGUNAKAN METODE BÉZIER CURVE

    Directory of Open Access Journals (Sweden)

    Puji Aswari

    2016-02-01

    Full Text Available Ekspresi wajah menjadi bahasa yang universal. Bahkan perubahan ekspresi wajah dapat membantu pengambilan keputusan. Pada tahun 1972, Paul Ekman mengklasifikasikan emosi dasar manusia ke dalam enam jenis: senang, sedih, terkejut, marah, takut, dan jijik. Kemudian Ekman dan Wallace Friesen mengembangkan sebuah alat untuk mengukur pergerakan pada wajah yang disebut Facial Action Coding System (FACS. FACS menentukan ekspresi wajah berdasarkan pergerakan otot wajah, yang diistilahkan Action Unit (AU. Penelitian ini bertujuan untuk mengetahui emosi tertarik yang dialami seseorang berdasarkan AU yang telah ditentukan oleh Paul Ekman dengan cara membandingkan dua buah citra, yaitu citra wajah tanpa ekspresi dan citra wajah berekspresi. Hasil penelitian ini memperoleh sebuah aplikasi yang mampu mengidentifikasi emosi tertarik dengan akurasi sebesar 80%, True Positive Rate 80%, dan True Negative Rate 80%. Dengan adanya penelitian ini diharapkan dapat diketahui karakteristik action unit yang membentuk emosi tertarik, juga memberikan masukan bagi proses evaluasi belajar mengajar mata kuliah pemrograman.

  16. SURVEI TEKNIK CLUSTERING ROUTING BERDASARKAN MOBILITAS PADA WIRELESS AD-HOC NETWORK

    Directory of Open Access Journals (Sweden)

    I Nyoman Trisna Wirawan

    2016-01-01

    Full Text Available Wireless ad-hoc merupakan sebuah skema jaringan yang didesain supaya mampu beroperasi tanpa membutuhkan infrastruktur tetap serta bersifat otonom. Teknik flooding pada proses path discovery dalam kasus wireless ad-hoc network dapat menimbulkan masalah beban jaringan yang berlebihan. Oleh karena itu, sebuah skema clustering diusulkan untuk mengurangi adanya flooding paket yang berlebihan dengan membagi node-node dalam jaringan menjadi beberapa bagian berdasarkan parameter tertentu. Teknik ini efektifuntuk mengurangi paket yang harus dilewatkan dalam jaringan. Namun masalah muncul ketika sebuah jaringan wireless ad-hoc harus membentuk sebuah cluster dengan mempertimbangkan beberapa parameter khusus. Parameter tersebut harus disesuaikan dengan kasus yang dihadapi. Pada tulisan ini akan dibahas secara khusus mengenai penerapan skema clustering dalam lingkungan wireless ad-hoc network, baik pada MANETdan penyesuaian skema clustering yang harus dilakukan pada VANET berdasarkan mobilitasnya.

  17. Analisis Penerapan Sistem Manajemen Limbah Berdasarkan Sertifikasi Eco-hotel Di Sheraton Surabaya Hotel and Towers

    OpenAIRE

    Wibowo, Melisa; Andreani, Fransisca

    2013-01-01

    Sistem manajemen limbah menjadi hal yang perlu diperhatikan bagi pelaksana bisnis perhotelan. Sheraton Surabaya Hotel and Towers mendasarkan sistem manajemen limbah pada sertifikasi Eco-Hotel, yaitu sertifikasi yang didasarkan pada ISO 14001 tahun 2004 mengenai Standar Manajemen Lingkungan dan diaplikasikan pada bisnis dan operasional hotel. Dalam penelitian ini, penulis ingin mengetahui penerapan sistem manajemen limbah berdasarkan sertifikasi Eco-Hotel di Sheraton Surabaya Hotel and Towers....

  18. ANALISIS KOVARIANSI PADA RANCANGAN ACAK KELOMPOK TIDAK LENGKAP TIDAK SEIMBANG BERDASARKAN POSISI DATA HILANG

    OpenAIRE

    MANGKAWANI, RESKI

    2016-01-01

    Rancangan acak kelompok tidak lengkap tidak seimbang adalah rancangan yang memiliki jumlah perlakuan yang berbeda di setiap kelompok dengan kata lain ada satu atau lebih unit percobaan yang hilang pada rancangan tersebut. Jika di dalam rancangan acak kelompok tidak lengkap tidak seimbang terdapat dua data hilang, maka akan tercipta tiga kasus berdasarkan posisi data hilangnya yaitu, kelompoknya berbeda serta perlakuannya berbeda (kasus I), kelompoknya sama serta perlakuannya yang berbeda (kas...

  19. Memori English Irregular Verbs Berdasarkan Frekuensi Pengulangan dan Jenis Kelamin Santri

    Directory of Open Access Journals (Sweden)

    H. Sribagus

    2013-01-01

    Full Text Available Abstract: Retention of English Irregular Verbs in Relation to Repetition Frequency and Sex. The study explores the most effective and preferred repetition frequency to facilitate memorizing English ir­regular verbs (EIV by students of different sexes, 35 male students and 30 female students of an Islamic boarding school in West Nusa Tenggara. The data for this experimental study were collected through VCD that records EIV, tests, questionnaires, and interviews. The results of the two-way ANOVA analysis indicate that male students had a higher degree of EIV memory based on repetition frequency, with two-time repetition as the most preferred frequency. For male students, the higher the frequency, the lower the memory. Abstrak: Memori English Irregular Verbs Berdasarkan Frekuensi Pengulangan dan Jenis Kelamin Santri. Penelitian ini bertujuan untuk menentukan frekuensi pengulangan yang efektif dan disukai untuk meningkatkan memori EIV berdasarkan jenis kelamin. Data penelitian eksperimen ini dikumpulkan melalui video compact disk (VCD yang merekam English Irregular Verb, tes, angket dan wawancara terhadap 35 santri putra dan 30 santri putri di pondok pesantren di Nusa Tenggara Barat. Kemudian data dianalisis dengan Anava-dua Jalur. Ditemukan bahwa ada perbedaan taraf memori EIV berdasarkan frekuensi pengulangan antara santri putra dan santri putriMemori EIV santri putra lebih tinggi daripada santri putri. Frekuensi pengulangan yang paling efektif adalah dua kali. Semakin tinggi frekuensi pengulangan, semakin rendah memori. Urutan pilihan frekuensi santri putra adalah 2-4-6, sedangkan santri putri 2-6-4.

  20. PEMODELAN STRUKTUR BAWAH PERMUKAAN DAERAH SUMBER AIR PANAS SONGGORITI KOTA BATU BERDASARKAN DATA GEOMAGNETIK

    Directory of Open Access Journals (Sweden)

    Dafiqiy Ya’lu Ulin Nuha, Novi Avisena

    2012-05-01

    Full Text Available Telah dilakukan penelitian dengan metode geomagnetik pada tanggal 26 -27 April 2011 di daerah Songgoriti Kota Batu dengan tujuan untuk mengetahui pola Anomali Magnet Total dan struktur geologi bawah permukaan. Setelah dilakukan koreksi data yang meliputi koreksi diurnal dan koreksi IGRF maka didapatkan nilai anomali magnet total serta kontinuasi ke atas dan reduksi ke kutub. Selanjutnya dilakukan interpretasi secara kualitatif dan kuantitatif. Interpretasi kuantitatif dilakukan dengan membaca pola kontur anomali magnet lokal dan reduksi ke kutub, sedangkan interpretasi kualitatif dilakukan dengan membuat penampang 2,5 D pada dua lintasan AB dan CD. Berdasarkan interpretasi kuantitatif pada kontur anomali  magnetik lokal didapatkan variasi nilai anomali antara -800 nT-600 nT dengan anomali tinggi terdapat pada arah timur dan barat daerah penelitian, anomali sedang terletak pada daerah tengah penelitian dan anomali rendah terdapat pada sedikit   daerah   tengah   penelitian.   Daerah   penelitian   didominasi   anomali   magnetik   sedang. Berdasarkan interpretasi kualitatif pada model penampang 2,5 D lintasan AB dan CD, didapatkan tujuh body yaitu batuan tufa, batuan tufa, batuan breksi vulkanik, batuan breksi tufaan, batuan lava, batuan basalt, dan batuan andesit. Berdasarkan sifat fisik dari tiap lapisan batuan, diduga batuan sarang dalam sistem geothermal yang berupa sumber air panas di daerah penelitian adalah batuan breksi vulkanik dengan batuan penutup (cap rock berupa batuan tufa. Kata Kunci : Anomali Magnet, Struktur Geologi, Air Panas.

  1. The use of ATR-FTIR imaging to study coated oil capsules

    NARCIS (Netherlands)

    Heussen, P.C.M.; Dalen, van G.; Nootenboom, P.; Smit, I.; Duynhoven, van J.P.M.

    2012-01-01

    Fourier transform infrared (FTIR) spectroscopic imaging using a large Internal Reflection Element (IRE), also called Attenuated Total Reflection (ATR) crystal, can be used for the identification and localisation of chemical compounds in solid food products. In this study ATR-FTIR imaging, by means

  2. Modern approaches in deep learning for SAR ATR

    Science.gov (United States)

    Wilmanski, Michael; Kreucher, Chris; Lauer, Jim

    2016-05-01

    Recent breakthroughs in computational capabilities and optimization algorithms have enabled a new class of signal processing approaches based on deep neural networks (DNNs). These algorithms have been extremely successful in the classification of natural images, audio, and text data. In particular, a special type of DNNs, called convolutional neural networks (CNNs) have recently shown superior performance for object recognition in image processing applications. This paper discusses modern training approaches adopted from the image processing literature and shows how those approaches enable significantly improved performance for synthetic aperture radar (SAR) automatic target recognition (ATR). In particular, we show how a set of novel enhancements to the learning algorithm, based on new stochastic gradient descent approaches, generate significant classification improvement over previously published results on a standard dataset called MSTAR.

  3. Structural Analysis of Spiropyran Polimers using ATR Spectroscopy

    Energy Technology Data Exchange (ETDEWEB)

    Delgado Macui, R; Rojas Lopez, M; Gayou, V L; Orduna Diaz, A [Centro de Investigacion en BiotecnologIa Aplicada del IPN, San Juan de los Molinos km. 1.5 Tepetitla de Lardizabal, A.P. 90700, Tlaxcala (Mexico)

    2006-01-01

    We have used infrared spectroscopy in attenuated total reflection (ATR) mode to analyze the interactions between the polymeric base and solvent with a photochromic material (spyropiran). We used cellulose acetate as polymeric base and the spyropiran; 1,3,3 trimethyl indoline-5-nitro benzopyrane. Thin films with different weight concentrations of SP were deposited in the polymeric base. The infrared spectra show bands whose frequencies are associated to several molecular bondings. It was observed a decreasing in intensity of absorbance for C = O stretching mode of the acetate group at 1720 cm{sup -1} and for C = C stretching mode for the main chain at 823 and 982 cm{sup -1} both associated to the presence of SP in polymeric films.

  4. Feature Fusion Based on Convolutional Neural Network for SAR ATR

    Directory of Open Access Journals (Sweden)

    Chen Shi-Qi

    2017-01-01

    Full Text Available Recent breakthroughs in algorithms related to deep convolutional neural networks (DCNN have stimulated the development of various of signal processing approaches, where the specific application of Automatic Target Recognition (ATR using Synthetic Aperture Radar (SAR data has spurred widely attention. Inspired by the more efficient distributed training such as inception architecture and residual network, a new feature fusion structure which jointly exploits all the merits of each version is proposed to reduce the data dimensions and the complexity of computation. The detailed procedure presented in this paper consists of the fused features, which make the representation of SAR images more distinguishable after the extraction of a set of features from DCNN, followed by a trainable classifier. In particular, the obtained results on the 10-class benchmark data set demonstrate that the presented architecture can achieve remarkable classification performance to the current state-of-the-art methods.

  5. IMPLEMENTASI PENDEKATAN SAINTIFIK PADA PENUGASAN AKTIVITAS DI BUKU TEKS BAHASA INDONESIA KELAS VII SMP BERDASARKAN KURIKULUM 2013

    Directory of Open Access Journals (Sweden)

    Fitri Kurniasari

    2017-02-01

    Full Text Available Abstract: Scientific Approach Implementation On Task Activity In Indonesia Language Text  Book For Seventh Grade Students Based On Curriculum 2013.This research aims to: (1 know the steps of “Scientific Approach” which are reflected on the tasks based on complete steps, (2 know the steps of “Scientific Approach” which are reflected on the tasks based onthe sequence steps. The research design used in this research is content analysis. The main  instrument in this research is human instrument. The research data is collected with “simak” method with tecqnique “baca” and “catat”. The data analysis is done using distributional method with tecqnique “pemilahan” based on catagory. The research reveals two findings. First, based on the complete steps, there found complete and incomplete task step. Second, based on sequence steps, there are sequence task and not sequence task. Keyword: activity task, text book, scientific approach Abstract: Implementasi Pendekatan Saintifik Pada Penugasan Aktivitas Dibuku Teks Bahasa Indonesia Kelas VII SMP Berdasarkan Kurikulum 2013. Penelitian ini bertujuan: (1 mengetahui penggunaan langkah-langkah pendekatan saintifik yang tercermin dalam penugasan berdasarkan kelengkapan langkah, (2 mengetahui penggunaan langkah-langkah pendekatan saintifik yang tercermin dalam penugasan berdasarkan urutan langkah. Desain penelitian yang digunakan dalam penelitian ini adalah analisis konten. Instrumen utama penelitian ini adalah human instrument. Data penelitian dikumpulkan dengan metode simak dengan teknik baca dan catat. Analisis data dilakukan dengan teknik pemilahan data berdasarkan katagori tertentu. Penelitian menemukan dua hasil yang  terdapat dalam Buku Teks Bahasa Indonesia Kelas VII SMP Berdasarkan Kurikulum 2013 sebagai berikut. Pertama, berdasarkan katagori kelengkapan langkah, ditemukan adanya penugasan yang menggunakan langkah secara lengkap dan tidak lengkap. Kedua, berdasarkan katagori

  6. Mutation of serine 1333 in the ATR HEAT repeats creates a hyperactive kinase.

    Directory of Open Access Journals (Sweden)

    Jessica W Luzwick

    Full Text Available Subcellular localization, protein interactions, and post-translational modifications regulate the DNA damage response kinases ATR, ATM, and DNA-PK. During an analysis of putative ATR phosphorylation sites, we found that a single mutation at S1333 creates a hyperactive kinase. In vitro and in cells, mutation of S1333 to alanine (S1333A-ATR causes elevated levels of kinase activity with and without the addition of the protein activator TOPBP1. S1333 mutations to glycine, arginine, or lysine also create a hyperactive kinase, while mutation to aspartic acid decreases ATR activity. S1333A-ATR maintains the G2 checkpoint and promotes completion of DNA replication after transient exposure to replication stress but the less active kinase, S1333D-ATR, has modest defects in both of these functions. While we find no evidence that S1333 is phosphorylated in cultured cells, our data indicate that small changes in the HEAT repeats can have large effects on kinase activity. These mutants may serve as useful tools for future studies of the ATR pathway.

  7. Evaluation of the AtrAedes™ Lure for Collection of Culex quinquefasciatus in Gravid Traps.

    Science.gov (United States)

    Irish, S R; Batengana, B M; Eiras, A E; Cameron, M M

    2015-03-01

    The typical attractant used in gravid trapping of Culex quinquefasciatus is an aged infusion of organic materials, which can change in attractiveness over time. A standardized chemical attractant dispenser derived from grass infusion, the AtrAedes™ lure, has been produced for the surveillance of the dengue vector Aedes aegypti. A study using this lure in combination with the Centers for Disease Control and Prevention gravid traps was conducted in Tanga, Tanzania. The addition of the lure to traps baited with either grass infusion or tap water did not result in significant increases in trap catch. Grass infusion-baited traps (with and without the AtrAedes lure) collected significantly more Cx. quinquefasciatus than traps baited with AtrAedes + tap water, tap water alone, or AtrAedes alone. The catches of the traps baited with AtrAedes + tap water, tap water alone, and AtrAedes alone were not significantly different from each other. Although the placement of the lure in the base of the trap may have decreased trap catches, it seems that the AtrAedes is not as effective as grass infusion for collecting Cx. quinquefasciatus in Tanzania.

  8. Roles of ATR1 paralogs YMR279c and YOR378w in boron stress tolerance

    OpenAIRE

    BOZDAĞ, Gönensin Ozan; Uluışık, İrem; Gülcüler, Gülce Sıla; Karakaya, Hüseyin Çağlar; KOÇ, Ahmet

    2011-01-01

    Boron is a necessary nutrient for plants and animals, however excess of it causes toxicity. Previously, Atr1 and Arabidopsis Bor1 homolog were identified as the boron efflux pump in yeast, which lower the cytosolic boron concentration and help cells to survive in the presence of toxic amount of boron. In this study, we analyzed ATR1 paralogs, YMR279c and YOR378w, to understand whether they participate in boron stress tolerance in yeast. Even though these genes share homology with ATR1, neithe...

  9. PENINGKATAN KEMAMPUAN MAHASISWA DALAM MENGEMBANGKAN PERANGKAT PEMBELAJARAN FISIKA MELALUI PENELAAHAN PERANGKAT PEMBELAJARAN BERDASARKAN MASALAH

    Directory of Open Access Journals (Sweden)

    Hermin Budiningarti

    2015-12-01

    Full Text Available Penelitian ini dilatarbelakangi oleh sejumlah perangkat pembelajaran yang belum dimanfaatkan secara optimal oleh mahasiswa. Melalui perkuliahan Teaching Learning Process 3 (TLP 3 yang berisi pengkajian tentang model-model pembelajaran selama ini disajikan secara teoritis melalui tatap muka, pemodelan, workshop, dan praktek pembelajaran dalam forum, perangkat tersebut dioptimalkan. Standar kompetensi mata kuliah tersebut adalah mahasiswa terampil merancang dan mengelola proses pembelajaran menggunakan model pembelajaran diskusi kelas (class discussion,  penemuan terbimbing (guided discovery, dan pembelajaran berdasarkan masalah (problem based learning. Kompetensi ini akan lebih mudah tercapai bilamana mahasiswa sebelumnya dibekali dengan kemampuan menilai sebuah perangkat pembelajaran terkait kesesuaiannya dengan model pembelajaran yang diterapkan. Pada penelitian ini, perangkat pembelajaran berdasarkan masalah (PBI karya mahasiswa terdahulu dinilai oleh mahasiswa dan dosen dengan menggunakan instrumen yang sama (IPKG1 menghasilkan penilaian X1 dan X2. Setelah itu mahasiswa merancang perangkat pembelajaran model PBI dan dinilai oleh dosen menggunakan IPKG1 dan menghasilkan penilaian Y1. Perangkat pembelajaran PBI yang telah dihasilkan kemudian disimulasikan oleh mahasiswa dan dinilai oleh dosen dengan menggunakan IPKG2 menghasilkan penilaian Y2. Analisis data menggunakan analisis korelasi dan analisis jalur (path analysis. Hasil penelitian menghasilkan beberapa temuan: 1 Tingkat kesesuaian penilaian perangkat PBI oleh mahasiswa dan dosen cukup tinggi dengan korelasi yang tinggi, 2 Keterampilan mahasiswa dalam mengembangkan perangkat pembelajaran model pembelajaran berdasarkan masalah untuk skala 0-100 berada pada kisaran 77,94-97,06 dengan rata-rata 87,04 yang berarti baik. Penilaian contoh perangkat oleh mahasiswa dan dosen tidak berkorelasi dan tidak memberikan dampak atas keterampilan mahasiswa dalam mengembangkan perangkat pembelajaran model

  10. Identification of a Novel System for Boron Transport: Atr1 Is a Main Boron Exporter in Yeast▿ †

    Science.gov (United States)

    Kaya, Alaattin; Karakaya, Huseyin C.; Fomenko, Dmitri E.; Gladyshev, Vadim N.; Koc, Ahmet

    2009-01-01

    Boron is a micronutrient in plants and animals, but its specific roles in cellular processes are not known. To understand boron transport and functions, we screened a yeast genomic DNA library for genes that confer resistance to the element in Saccharomyces cerevisiae. Thirty boron-resistant transformants were isolated, and they all contained the ATR1 (YML116w) gene. Atr1 is a multidrug resistance transport protein belonging to the major facilitator superfamily. C-terminal green fluorescent protein-tagged Atr1 localized to the cell membrane and vacuole, and ATR1 gene expression was upregulated by boron and several stress conditions. We found that atr1Δ mutants were highly sensitive to boron treatment, whereas cells overexpressing ATR1 were boron resistant. In addition, atr1Δ cells accumulated boron, whereas ATR1-overexpressing cells had low intracellular levels of the element. Furthermore, atr1Δ cells showed stronger boron-dependent phenotypes than mutants deficient in genes previously reported to be implicated in boron metabolism. ATR1 is widely distributed in bacteria, archaea, and lower eukaryotes. Our data suggest that Atr1 functions as a boron efflux pump and is required for boron tolerance. PMID:19414602

  11. ATR-FTIR as a potential tool for controlling high quality vinegar categories

    DEFF Research Database (Denmark)

    Ríos-Reina, Rocío; Callejón, Raquel M.; Oliver-Pozo, Celia

    2017-01-01

    Characterization of wine vinegars qualified with a Protected Designation of Origin (PDO) is crucial to certify their quality and authenticity. Spectroscopic techniques as Fourier transform mid infrared spectroscopy (FTIR) with Attenuated Total Reflectance (ATR) has been applied to investigate its...

  12. Montana Weigh-in-Motion (WIM) and Automatic Traffic Recorder (ATR) Strategy Final Report

    Science.gov (United States)

    2017-03-01

    The objective of this project was to review the Montana Department of Transportations (MDTs) permanent Weigh-in-Motion (WIM) and Automated Traffic Recorder (ATR) data collection programs to ensure they are efficiently providing the best possibl...

  13. Encefalomenigocele atrésico parietal Parietal atresic encephalomeningocele

    Directory of Open Access Journals (Sweden)

    Liliana Rivera Oliva

    2011-09-01

    Full Text Available El encefalocele es una anomalía congénita rara, en la que una porción del encéfalo protruye a través de un orificio craneal (evaginación, generalmente situado en la línea media. Clínicamente se caracteriza por una masa epicraneal, de consistencia blanda, muchas veces acompañada de trastornos psicomotores, convulsiones y trastornos de la visión. Se presenta el caso de un recién nacido con diagnóstico de encefalomeningocele atrésico parietal, intervenido quirúrgicamente y con evolución satisfactoria.The encephalocele is a uncommon congenital anomaly where a portion of encephalon protrudes through a cranial orifice (evagination, generally located in the middle line. Clinically, it is characterized by a soft epicranial mass often accompanied or psychomotor disorders, convulsions and vision disorders. This is the case of a newborn diagnosed with parietal atresic encephalomeningocele operated on with a satisfactory evolution.

  14. Experimental active control of sound in the ATR 42

    Science.gov (United States)

    Paonessa, A.; Sollo, A.; Paxton, M.; Purver, M.; Ross, C. F.

    Passenger comfort is becoming day by day an important issue for the market of the regional turboprop aircraft and also for the future high speed propeller driven aircraft. In these aircraft the main contribution to the passenger annoyance is due to the propeller noise blade passing frequency (BPF) and its harmonics. In the recent past a detailed theoretical and experimental work has been done by Alenia Aeronautica in order to reduce the noise level in the ATR aircraft passenger cabin by means of conventional passive treatments: synchrophasing of propellers, dynamic vibration absorbers, structural reinforcements, damping materials. The application of these treatments has been introduced on production aircraft with a remarkable improvement of noise comfort but with a significant weight increase. For these reasons, a major technology step is required for reaching passenger comfort comparable to that of jet aircraft with the minimum weight increase. The most suitable approach to this problem has been envisaged in the active noise control which consists in generating an anti-sound field in the passenger cabin to reduce the noise at propeller BPF and its harmonics. The attenuation is reached by means of a control system which acquires information about the cabin noise distribution and the propeller speed during flight and simultaneously generates the signals to drive the speakers.

  15. Neutron dosimetry and damage calculations for the ATR-A1 irradiation

    Energy Technology Data Exchange (ETDEWEB)

    Greenwood, L.R.; Ratner, R.T. [Pacific Northwest National Lab., Richland, WA (United States)

    1998-09-01

    Neutron fluence measurements and radiation damage calculations are reported for the collaborative US/Japan ATR-A1 irradiation in the Advanced Test Reactor (ATR) at Idaho National Engineering Laboratory (INEL). The maximum total neutron fluence at midplane was 9.4 {times} 10{sup 21} n/cm{sup 2} (5.5 {times} 10{sup 21} n/cm{sup 2} above 0.1 MeV), resulting in about 4.6 dpa in vanadium.

  16. Pengembangan Ekonomi Lokal di Kawasan Perikanan Berdasarkan Preferensi Masyarakat Nelayan Nambangan Kedung Cowek

    Directory of Open Access Journals (Sweden)

    Rheza Firmantyo Pramono

    2013-09-01

    Full Text Available Wilayah nambangan memiliki prosentase 40% sebagai nelayan menggantungkan dengan kondisi pesisir, mengindikasikan bahwa wilayah nambangan memiliki potensi pesisir yang cukup besar. Namun masih mempunyai beberapa keterbatasan yang perlu diperhatikan seperti SDA, SDM, Pendanaan, Prasarana Sarana, Kelembagaan, dan teknologi di kawasan pesisir Nambangan Kedung Cowek. Tujuan penelitian ini untuk merumuskan arahan pengembangan ekonomi lokal wilayah nambangan berdasarkan preferensi masyarakat. Metode yang digunakan dalam penelitian ini menggunakan metode deskriptif kualitatif. Analisis pertama penentuan faktor kurang berkembangnya ekonomi lokal menggunakan teknik delphi, selanjutnya menentukan preferensi masyarakat dan faktor prioritas menggunakan teknik servqual. Melalui metode servqual ditemukan banyak faktor prioritas yang harus dikembangkan yaitu SDA, SDM , Pendanaan, Prasarana Sarana, Kelembagaan, Teknologi, dan Pemasaran. Selanjutnya menentukan arahan pengembangan ekonomi lokal beradasakan faktor prioritas menggunakan teknik triangulasi berdasarkan tujuh faktor priortas dengan menggabungkan studi literatur, studi kasus wilayah lain dan temuan fakta emipiri di lapangan. Hasil akhir berupa peningkatan prasarana sarana berupa penataan lingkungan sempadan pantai, pengelolahan limbah, peningkatan sumberdaya manusia berupa pelatihan mutu pendidikan dan wawasan ekonomi. Selanjutnya peningkatan upaya pemasaran dengan membangun mina store dan peningkatan fasilitas alat tangkap.

  17. Pembuatan Perangkat Audit Berbasis Risiko Berdasarkan COBIT 5 dan Service Desk Standard pada Service Desk

    Directory of Open Access Journals (Sweden)

    Sarah Putri Ramadhani

    2017-03-01

    Full Text Available SubDirektorat Layanan Teknologi dan Sistem Informasi pada Direktorat Pengembangan Teknologi dan Sistem Informasi (DPTSI sebagai penyedia layanan TI di lingkungan Institut Teknologi Sepuluh Nopember (ITS tidak sedikit mengalami gangguan atau insiden yang mengakibatkan menurunnya kualitas pelayanan yang diberikan. Oleh karena itu terdapat unit service desk yang bertugas menangani berbagai macam keluhan insiden dan memenuhi permintaan layanan TI. Namun DPTSI belum pernah mengadakan pengendalian internal terhadap prosesnya. Untuk memastikan pengelolaan telah diterapkan dalam kontrolnya maka perlu sebuah metode yaitu audit internal. Salah satu hal yang perlu disiapkan dalam melaksanakan audit adalah perangkat audit karena menyediakan serangkaian instruksi dari proses yang harus dilakukan service desk sehingga membantu seorang auditor dalam menjalankan audit sesuai dengan tujuan dan memastikan seluruh proses telah dilakukan. Berdasarkan permasalahan tersebut, penelitian ini mengembangkan perangkat audit pada service desk DPTSI yang dibuat berdasarkan control objective pada Service Desk Standard yang dipetakan dengan proses pada best practice COBIT 5 domain DSS02. Ruang lingkup perangkat audit juga ditetapkan melalui control objective yang dipetakan dengan risiko TI pada service desk yang dianalisis menggunakan pendekatan best practice COBIT 5 for Risk APO12 Manage Risk. Hasil dari penelitian ini adalah sebuah dokumen perangkat audit beserta panduan penggunaannya, yang nantinya diharapkan dapat membantu DPTSI untuk melakukan audit pada service desk..

  18. APOBEC3A and APOBEC3B Activities Render Cancer Cells Susceptible to ATR Inhibition.

    Science.gov (United States)

    Buisson, Rémi; Lawrence, Michael S; Benes, Cyril H; Zou, Lee

    2017-09-01

    The apolipoprotein B mRNA editing enzyme catalytic polypeptide-like APOBEC3A and APOBEC3B have emerged as key mutation drivers in cancer. Here, we show that APOBEC3A and APOBEC3B activities impose a unique type of replication stress by inducing abasic sites at replication forks. In contrast to cells under other types of replication stress, APOBEC3A-expressing cells were selectively sensitive to ATR inhibitors (ATRi), but not to a variety of DNA replication inhibitors and DNA-damaging drugs. In proliferating cells, APOBEC3A modestly elicited ATR but not ATM. ATR inhibition in APOBEC3A-expressing cells resulted in a surge of abasic sites at replication forks, revealing an ATR-mediated negative feedback loop during replication. The surge of abasic sites upon ATR inhibition associated with increased accumulation of single-stranded DNA, a substrate of APOBEC3A, triggering an APOBEC3A-driven feed-forward loop that ultimately drove cells into replication catastrophe. In a panel of cancer cell lines, ATRi selectively induced replication catastrophe in those harboring high APOBEC3A and/or APOBEC3B activities, showing that APOBEC3A and APOBEC3B activities conferred susceptibility to ATRi. Our results define an APOBEC-driven replication stress in cancer cells that may offer an opportunity for ATR-targeted therapy. Cancer Res; 77(17); 4567-78. ©2017 AACR. ©2017 American Association for Cancer Research.

  19. ATM and ATR Signaling Regulate the Recruitment of Human Telomerase to Telomeres

    Directory of Open Access Journals (Sweden)

    Adrian S. Tong

    2015-11-01

    Full Text Available The yeast homologs of the ATM and ATR DNA damage response kinases play key roles in telomerase-mediated telomere maintenance, but the role of ATM/ATR in the mammalian telomerase pathway has been less clear. Here, we demonstrate the requirement for ATM and ATR in the localization of telomerase to telomeres and telomere elongation in immortal human cells. Stalled replication forks increased telomerase recruitment in an ATR-dependent manner. Furthermore, increased telomerase recruitment was observed upon phosphorylation of the shelterin component TRF1 at an ATM/ATR target site (S367. This phosphorylation leads to loss of TRF1 from telomeres and may therefore increase replication fork stalling. ATM and ATR depletion reduced assembly of the telomerase complex, and ATM was required for telomere elongation in cells expressing POT1ΔOB, an allele of POT1 that disrupts telomere-length homeostasis. These data establish that human telomerase recruitment and telomere elongation are modulated by DNA-damage-transducing kinases.

  20. Cancer-Specific Synthetic Lethality between ATR and CHK1 Kinase Activities

    Directory of Open Access Journals (Sweden)

    Kumar Sanjiv

    2016-01-01

    Full Text Available ATR and CHK1 maintain cancer cell survival under replication stress and inhibitors of both kinases are currently undergoing clinical trials. As ATR activity is increased after CHK1 inhibition, we hypothesized that this may indicate an increased reliance on ATR for survival. Indeed, we observe that replication stress induced by the CHK1 inhibitor AZD7762 results in replication catastrophe and apoptosis, when combined with the ATR inhibitor VE-821 specifically in cancer cells. Combined treatment with ATR and CHK1 inhibitors leads to replication fork arrest, ssDNA accumulation, replication collapse, and synergistic cell death in cancer cells in vitro and in vivo. Inhibition of CDK reversed replication stress and synthetic lethality, demonstrating that regulation of origin firing by ATR and CHK1 explains the synthetic lethality. In conclusion, this study exemplifies cancer-specific synthetic lethality between two proteins in the same pathway and raises the prospect of combining ATR and CHK1 inhibitors as promising cancer therapy.

  1. Achilles Tendon Reflex (ATR) in response to short exposures of microgravity and hypergravity

    Science.gov (United States)

    Fujii, M.; Jaweed, M.

    1992-01-01

    Previous studies indicate that latency and amplitude of the Achilles tendon reflex (ATR) are reduced after exposure to microgravity for 28 days. The objective of this study was to quantitatively measure the latency of ATR during brief (20 sec) exposure to microgravity in KC-135 parabolic flights. Methods: The ATR was elicited in ten men during parabolic flight with the ankle held neutrally, planarflexed, and dorsiflexed. During flight, the ATR was elicited during the zero G and 1.8 G phases. Postflight testing was performed flying back to the airfield. Latencies to onset of the ATR were calculated and analyses of variance were performed to determine the effect of gravity and ankle position on latency. Result: The mean latencies for zero-G, 1.8-G and postflight with the ankle in the neutral position were 32.7 plus or minus 0.5 ms, and 33.1 plus or minus 0.7 ms respectively, which were not significantly different. There was a trend toward prolongation of latencies postflight. The mean latency for those who were motion sick was 32.1 plus or minus 0.1 ms compared to 34.0 plus or minus 0.3 ms for those who were not sick. Conclusions: These studies indicate that neither the level of gravity nor ankle position significantly affected the latency of the ATR.

  2. Untangling the ATR-CHEK1 network for prognostication, prediction and therapeutic target validation in breast cancer.

    Science.gov (United States)

    Abdel-Fatah, Tarek M A; Middleton, Fiona K; Arora, Arvind; Agarwal, Devika; Chen, Tao; Moseley, Paul M; Perry, Christina; Doherty, Rachel; Chan, Stephen; Green, Andrew R; Rakha, Emad; Ball, Graham; Ellis, Ian O; Curtin, Nicola J; Madhusudan, Srinivasan

    2015-03-01

    ATR-CHEK1 signalling is critical for genomic stability. ATR-CHEK1 signalling may be deregulated in breast cancer and have prognostic, predictive and therapeutic significance. We investigated ATR, CHEK1 and phosphorylated CHEK1 (Ser345) protein (pCHEK1) levels in 1712 breast cancers. ATR and CHEK1 mRNA expression was evaluated in 1950 breast cancers. Pre-clinically, biological consequences of ATR gene knock down or ATR inhibition by the small molecule inhibitor (VE-821) were investigated in MCF7 and MDA-MB-231 breast cancer cell lines and in non-tumorigenic breast epithelial cells (MCF10A). High ATR and high cytoplasmic pCHEK1 levels were significantly associated with higher tumour stage, higher mitotic index, pleomorphism and lymphovascular invasion. In univariate analyses, high ATR and high cytoplasmic pCHEK1 levels were associated with poor breast cancer specific survival (BCSS). In multivariate analysis, high ATR level remains an independent predictor of adverse outcome. At the mRNA level, high CHEK1 remains associated with aggressive phenotypes including lymph node positivity, high grade, Her-2 overexpression, triple negative, aggressive molecular phenotypes and adverse BCSS. Pre-clinically, CHEK1 phosphorylation at serine(345) following replication stress was impaired in ATR knock down and in VE-821 treated breast cancer cells. Doxycycline inducible knockdown of ATR suppressed growth, which was restored when ATR was re-expressed. Similarly, VE-821 treatment resulted in a dose dependent suppression of cancer cell growth and survival (MCF7 and MDA-MB-231) but was less toxic in non-tumorigenic breast epithelial cells (MCF10A). We provide evidence that ATR and CHEK1 are promising biomarkers and rational drug targets for personalized therapy in breast cancer. Copyright © 2014 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

  3. PENERAPAN DATAMINING PADA POPULASI DAGING AYAM RAS PEDAGING DI INDONESIA BERDASARKAN PROVINSI MENGGUNAKAN K-MEANS CLUSTERING

    Directory of Open Access Journals (Sweden)

    Mhd Gading Sadewo

    2017-09-01

    Full Text Available Ayam bukanlah makanan yang asing bagi penduduk Indonesia. Makanan tersebut sangat mudah dijumpai dalam kehidupan masyarakat sehari-hari. Namun tingkat konsumsi daging ayam di Indonesia masih tergolong rendah dibandingkan dengan Negara tetangga. Penelitian ini membahas tentang Penerapan Datamining Pada Populasi Daging Ayam Ras Pedaging di Indonesia Berdasarkan Provinsi Menggunakan K-Means Clustering. Sumber data penelitian ini dikumpulkan berdasarkan dokumen-dokumen keterangan populasi daging ayam yang dihasilkan oleh Badan Pusat Statistik Nasional. Data yang digunakan dalam penelitian ini adalah data dari tahun 2009-2016 yang terdiri dari 34 provinsi. Variable yang digunakan (1 jumlah populasi dari tahun 2009-2016. Data akan diolah dengan melakukan clushtering dalam 3 clushter yaitu clusther tingkat populasi tinggi, clusther tingkat populasi sedang dan rendah. Centroid data untuk cluster tingkat populasi tinggi 4711403141, Centroid data untuk cluster tingkat populasi sedang 304240647, dan Centroid data untuk cluster tingkat populasi rendah 554200. Sehingga diperoleh penilaian berdasarkan indeks populasi daging ayam dengan 1 provinsi tingkat populasi tinggi yaitu Jawa Barat, 6 provinsi tingkat populasi sedang yaitu Sumatera Utara, Jawa Tengah, Jawa Timur, Banten, Kalimantan Selatan dan Kalimantan Timur, dan 27 provinsi lainnya termasuk tingkat populasi rendah. Hal ini dapat menjadi masukan kepada pemerintah, provinsi yang menjadi perhatian lebih pada populasi daging ayam berdasarkan cluster yang telah dilakukan

  4. ANALISA PERHITUNGAN KEBUTUHAN PENERANGAN PADA BANGUNAN RIG RAISIS (OFFSHORE BERDASARKAN CLASS ABS DAN BKI BERBASIS VISUAL BASIC

    Directory of Open Access Journals (Sweden)

    Feri Diana

    2014-02-01

    Full Text Available Rig RAISIS adalah salah satu pengeboran milik P.T Apexindo Pratama Duta Tbk (APEX yang disewa oleh P.T TOTAL untuk memperpanjang kontraknya selama beberapa tahun. Rig RAISIS ini adalah bangunan offshore yang sudah lama berdiri namun perlu direnovasi. Untuk merenovasi diperlukan konsultan bangunan maritim yang salah satunya ditangani oleh P.T Terafulk Megantara Design. Dalam hal ini mereka masih menggunakan perhitungan secara manual. Maka untuk merencanakan penerangan dengan mudah dibuatlah program perhitungan lampu menggunakan program Visual Basic. Program ini dirancang menggunakan beberapa menu perhitungan berdasarkan dua formula, yaitu formula yang sudah lama diterapkan di PT Terafulk Megantara Design dan formula secara teoritis. Langkah menggunakan program ini adalah dengan memasukkan dimensi ruangan, iluminasi, dan luminasi maka akan muncul hasil luas ruangan dan jumlah lampu berdasarkan tipe lampu yang sudah dipilih. Program ini bisa digunakan untuk menghitung jumlah lampu berdasarkan 2 class yaitu ABS dan BKI. Berdasarkan 2 class yang sudah dihitung maka class ABS mempunyai jumlah lampu lebih banyak dibandingkan ruangan yang menggunakan class BKI. Program ini juga lebih cepat digunakan oleh perancang dengan waktu 45 menit dibandingkan menggunakan perhitungan manual yang memakan waktu 1,5 jam saat menghitung Deck Level 31.

  5. POLA SEBARAN SPESIES TIKUS HABITAT PASAR BERDASARKAN JENIS KOMODITAS DI PASAR KOTA BANJARNEGARA

    Directory of Open Access Journals (Sweden)

    Dwi Ernawati

    2014-01-01

    Full Text Available ABSTRACTRodents (Order Rodentia is a wild animal from mammals class and are known as nuisance animals in humanlife, especially domestic rats. Domestic rats have habitats close to human life such as housing, fields and markets.The market is a place where there are lots of food. The purpose of this research was describing the distribution ofrat species habitat based on the type of commodity markets in the Banjarnegara City Market. The researchmethod was a survey with cross-sectional approach, the whole population was rats in City Market and samplewas trapped rats in Banjarnegara City Market. A research instrument set mouse traps and pieces ofidentification, technical analysis is used descriptively and presented in narrative form and frequency distributiontable. The results showed that the number of rats caught consists of several species, 28 Rattus tanezumi, 1 R.norvegicus and 4 S. murinus. Based on trap location only R. tanezumi found inside kiosk. The percentage of ratpositive trap based on kiosk higher found in groceries kiosk (35%, while the lowest is spice kiosk, vegetables andfruits (4%. Rattus tanezumi more dominantly found than other species.Key words: rats, commodity, market, distributionABSTRAKTikus (Ordo Rodentia merupakan hewan liar dari golongan mamalia dan dikenal sebagai hewan pengganggudalam kehidupan manusia, terutama tikus domestik. Tikus domestik mempunyai habitat dekat dengan kehidupanmanusia seperti perumahan, sawah dan pasar. Pasar merupakan tempat yang banyak makanan. Tujuanpenelitian ini untuk mendeskripsikan pola sebaran spesies tikus habitat pasar berdasarkan jenis komoditas diPasar Kota Banjarnegara. Metode penelitiannya adalah survei dengan pendekatan cross sectional. Populasiseluruh tikus di Pasar Kota Banjarnegara dengan sampel tikus yang tertangkap. Teknis analisis secara deskriptifdan disajikan dalam bentuk narasi dan tabel distribusi frekuensi. Hasil penelitian menunjukkan jumlah tikusyang tertangkap antara lain

  6. PRODUKTIVITAS TENAGA PENGARIT BERDASARKAN MODA PENGANGKUT DI PETERNAKAN SAPI PERAH PONDOK RANGGON, JAKARTA TIMUR

    Directory of Open Access Journals (Sweden)

    Iwan Prihantoro

    2015-06-01

    Full Text Available Penelitian ini bertujuan untuk menganalisis produktivitas tenaga pengarit dan efektivitasnya berdasarkan moda pengangkut yang dipergunakan di peternakan sapi perah Pondok Ranggon, Jakarta Timur. Peternakan sapi perah Pondok Rangon merupakan salah satu peternakan yang masih bertahan di DKI Jakarta yang ketersediaan hijauan pakannya berasal pada padang rumput alam. Penelitian didasarkan pada sumber data primer dan sekunder dengan cara sensus dari total 22 peternak. Hasil penelitian menunjukkan bahwa karakteristik peternak di Pondok Rangon 40,91% telah berumur > 55 tahun dan 45,46% telah memiliki pengalaman >20 tahun. Kapasitas mengarit tertinggi pada umur 38 tahun (395 kg/hari dan moda truck lebih efisien dalam penyediaan hijauan dibanding pick up dan becak motor.

  7. Deteksi Kematangan Buah Pisang Berdasarkan Fitur Warna Citra Kulit Pisang Menggunakan Metode Transformasi Ruang Warna HIS

    Directory of Open Access Journals (Sweden)

    Indarto

    2017-05-01

    Full Text Available Pengolahan citra mempunyai peranan penting di berbagai bidang. Aplikasi pengolahan citra berkaitan dengan pemrosesan citra berkaitan dengan transformasi warna. Dalam paper ini dijelaskan mengenai metode transformasi warna HSI untuk deteksi pisang dan mengklasifikasikan dalam fase kematangan. Data dalam penelitian ini menggunakan citra pisang ambon yang diambil dengan kamera yang nantinya akan diambil sebagian (cropping pada kulit, yang kemudian akan diekstrak ciri warnanya, dan dihitung tingkat kadar warna dari R (red, G (green, dan B (blue dan diubah ke HSI. Berdasarkan input pelatihan deteksi jenis warna kulit pisang ambon diperoleh dari pengolahan citra dengan metode transformasi warna HSI. Dari hasil penelitian 20 sampel buah dimana 10 buah pisang ambon mentah dan 10 buah pisang ambon matang dengan dihitung nilai rata-rata maksimal dan minimal H dan S diperoleh akurasi kesesuaian sebesar 85%.

  8. VARIASI GENETIK MASYARAKAT SOROH PANDE DI KABUPATEN GIANYAR BERDASARKAN TIGA LOKUS DNA MIKROSATELIT AUTOSOM

    Directory of Open Access Journals (Sweden)

    Gusti Ayu Putri Arnila

    2016-11-01

    Full Text Available Perkembangan ilmu forensik berkaitan erat dengan penggunaan analisa DNA mikrosatelit sebagai salah satu sarana yang paling akurat untuk mengungkap identitas seseorang. Penelitian ini dilaksanakan untuk mengetahuiragam alel yang tersebar pada masyarakat soroh Pande di Kabupaten Gianyar dengan menggunakan tiga lokus DNA mikrosatelit autosom yaitu D2S1338, D13S317 dan D16S539.  Berdasarkan hasil analisa ditemukan 23 ragam alel dengan rata-rata 7,3 per lokus. Rata-rata nilai heterozigositas dari tiga lokus yang digunakan adalah 0,817 ± 0,029 menunjukkan bahwa secara genetik masyarakat soroh Pande sangat bervariasi. Rata-rata nilai Power of Discrimination adalah 0,893. Tingginya nilai Power of Discrimination menunjukkan bahwa ketiga lokus ini baik digunakan untuk membedakan antar individu pada kepentingan forensik.

  9. VARIASI GENETIK MASYARAKAT SOROH PANDE DI KABUPATEN GIANYAR BERDASARKAN TIGA LOKUS DNA MIKROSATELIT AUTOSOM

    Directory of Open Access Journals (Sweden)

    Gusti Ayu Putri Arnila

    2016-06-01

    Full Text Available Perkembangan ilmu forensik berkaitan erat dengan penggunaan analisa DNA mikrosatelit sebagai salah satu sarana yang paling akurat untuk mengungkap identitas seseorang. Penelitian ini dilaksanakan untuk mengetahuiragam alel yang tersebar pada masyarakat soroh Pande di Kabupaten Gianyar dengan menggunakan tiga lokus DNA mikrosatelit autosom yaitu D2S1338, D13S317 dan D16S539.  Berdasarkan hasil analisa ditemukan 23 ragam alel dengan rata-rata 7,3 per lokus. Rata-rata nilai heterozigositas dari tiga lokus yang digunakan adalah 0,817 ± 0,029 menunjukkan bahwa secara genetik masyarakat soroh Pande sangat bervariasi. Rata-rata nilai Power of Discrimination adalah 0,893. Tingginya nilai Power of Discrimination menunjukkan bahwa ketiga lokus ini baik digunakan untuk membedakan antar individu pada kepentingan forensik.

  10. PENGARUH PEMBELAJARAN GUIDED INQUIRY BERBASIS SALINGTEMAS TERHADAP KETERAMPILAN BERPIKIR KRITIS SISWA SMP BERDASARKAN KEMAMPUAN AKADEMIK

    Directory of Open Access Journals (Sweden)

    Matsna Khoirun Nisak

    2017-01-01

    Penelitian ini bertujuan untuk mengetahui pengaruh pembelajaran Guided inquiry berbasis salingtemas terhadap keterampilan berpikir kritis siswa berdasarkan kemampuan akademik berbeda. Penelitian ini termasuk jenis quasy experiment dengan menggunakan rancangan penelitian Post Test Only Design Factorial 3 x 2. Uji hipotesis yang digunakan dalam penelitian ini adalah uji ANOVA dengan uji lanjut LSD pada a = 0,05. Hasil penelitian ini adalah: (1 ada perbedaan keterampilan berpikir kritis antara siswa  yang mengikuti pembelajaran Guided inquiry berbasis salingtemas, Guided inquiry, dan konvensional; (2 ada perbedaan keterampilan berpikir kritis pada siswa berkemampuan akademik berbeda; (3 tidak ada perbedaan keterampilan berpikir kritis siswa berkemampuan akademik tinggi  yang mengikuti pembelajaran Guided inquiry berbasis salingtemas, Guided inquiry, dan konvensional; (4 ada perbedaan keterampilan berpikir kritis siswa berkemampuan akademik rendah yang mengikuti pembelajaran Guided inquiry berbasis salingtemas, Guided inquiry, dan konvensional; (5 tidak ada interaksi antara model pembelajaran dan kemampuan akademik terhadap keterampilan berpikir kritis.

  11. Analisis keragaman manggis (Garcinia mangostana diiradiasi dengan sinar gamma berdasarkan karakteristik morfologi dan anatomi

    Directory of Open Access Journals (Sweden)

    ALFIN WIDIASTUTI

    2010-11-01

    Full Text Available Abstrak. Widiastuti A, Sobir, Suhartanto MR. 2010. Analisis keragaman manggis (Garcinia mangostana diiradiasi dengan sinar gamma berdasarkan karakteristik morfologi dan anatomi. Bioteknologi 7: 85-98. Tujuan penelitian ini adalah meningkatkan keragaman genetik manggis (Garcinia mangostana L. yang diiradiasi dengan sinar gamma dosis 0 Gy, 20 Gy, 25 Gy, 30 Gy, 35 Gy dan 40 Gy. Bahan tanaman yang digunakan adalah biji yang dikumpulkan dari Kampung Cegal, Desa Karacak, Kecamatan Leuwiliang, Kabupaten Bogor, Jawa Barat. Data dihasilkan dari karakteristik morfologi dan anatomi. Hasil penelitian menunjukkan bahwa peningkatan dosis sinar gamma dapat menghambat pertumbuhan benih, sehingga membutuhkan waktu lebih lama untuk tumbuh dan menurunkan viabilitas benih. Secara morfologi, hal itu juga menurunkan tinggi tanaman, diameter batang, ukuran daun, dan jumlah daun. Secara anatomi, kepadatan stomata berkorelasi positif dengan tinggi tanaman dengan nilai korelasi adalah 90% dan 74%. Iradiasi sinar gamma dapat meningkatkan keragaman morfologi hingga 30%. Pemotongan benih setelah iradiasi dapat meningkatkan keragaman dan tingkat kelangsungan hidup manggis.

  12. ANALYTICAL HIERARCHY PROCCESS (AHP UNTUK MEMBANGUN MESIN PENCARI DATA LULUSAN PERGURUAN TINGGI BERDASARKAN KEBUTUHAN PENGGUNA LULUSAN

    Directory of Open Access Journals (Sweden)

    Agung Budi Prasetyo

    2016-04-01

    Full Text Available Telah menjadi tugas perguruan tinggi untuk membuat lulusan terserap dunia kerja. Keterserapan lulusan di dunia kerja akan tinggi apabila perguruan tinggi dapat melakukan link & match antara kebutuhan perusahaan dengan kompetensi yang dimiliki lulusan. Link & match yang baik dapat terjadi jika didukung oleh ketersediaan data yang akurat dan pengolah data yang baik. Makalah ini melaporkan hasil penelitian pembuatan mesin pencari data lulusan yang dapat dimanfaatkan oleh pengguna lulusan untuk mencari lulusan suatu perguruan tinggi. Dengan metode Analytical Hierarchy Proccess (AHP kriteria calon pegawai yang ditetapkan pengguna lulusan akan diurutkan berdasarkan skala prioritas kemudian dicocokkan dengan kompetensi lulusan. Apabila ditemukan kompetensi lulusan yang sesuai atau yang hampir sesuai maka mesin pencari akan menampilkan lulusan yang dimaksud beserta biodatanya untuk selanjutnya dapat dihubungi pihak pengguna lulusan. Dengan 14 kriteria dan 57 sub kriteria yang tersedia pengguna lulusan dapat menemukan sendiri lulusan yang dicari sesuai dengan kriteria yang dikehendakinya. Kata kunci: mesin pencari, data lulusan, AHP.

  13. Pembelajaran Berbasis Masalah Berdasarkan Langkah - Langkah Polya untuk Meningkatkan Kemampuan Menyelesaikan Soal Cerita Matematika

    Directory of Open Access Journals (Sweden)

    Hilyatin Nisak Sam

    2016-02-01

    Full Text Available Tujuan penelitian ini adalah untuk mendeskripsikan pembelajaran berbasis masalah berdasarkan langkah-langkah pemecahan masalah Polya yang dapat meningkatkan kemampuan menyelesaikan soal cerita matematika siswa kelas 8 SMPN 4 Malang. Data penelitian diperoleh dari analisis lembar jawaban tes, lembar observasi, lembar catatan lapangan, dan pedoman wawancara. Hasil penelitian menunjukkan bahwa pembelajaran berbasis masalah berdasarkan langkah-langkah pemecahan masalah Polya yang dapat  meningkatkan kemampuan menyelesaikan soal cerita matematika siswa kelas 8 adalah 1 mengenalkan siswa pada masalah, 2 mengorganisasi siswa untuk belajar, 3 membantu investigasi mandiri dan kelompok dengan menggunakan langkah-langkah pemecahan masalah Polya, yaitu a memahami masalah, b menyusun rencana, c melaksanakan rencana, dan d mengecek kembali, 4 mengembangkan dan mempresentasikan hasil karya, dan 5 menganalisis dan mengevaluasi proses pemecahan masalah.The purpose of this study was to describe the problem-based learning by Polya’s steps problem solving that can improve math word problem solving grade 8 SMPN 4 Malang. Data were obtained from the analysis of the test answer sheets, observation sheets, sheets of field notes, and the questionnaires. The results showed that the problem-based learning by Polya’s steps problem solving that can improve student math story problems completion of grade 8 are 1 to introduce students to the problem, 2 organize the students to learn, 3 helping independent investigation and groups using the Polya’s steps problem solving, namely a understand the problem, b devise a plan, c carry out the plan, and d look back, 4 develop and present work, and 5 analyze and evaluate the problem-solving process.

  14. IDENTIFIKASI TAHAP BERPIKIR GEOMETRI SISWA SMP NEGERI 2 AMBARAWA BERDASARKAN TEORI VAN HIELE

    Directory of Open Access Journals (Sweden)

    Susi Lestariyani

    2014-12-01

    Full Text Available Geometri dipelajari mulai dari sekolah dasar sampai di sekolah menengah atas. Beberapa kajian menunjukkan bahwa pada sekolah menengah pertama (SMP, banyak siswa memiliki kesulitan dalam belajar geometri. Level Geometri van Hiele dapat menjelaskan kesulitan geometri siswa. Van hiele menyatakan bahwa dalam memahami geometri, siswa perlu melalui lima level, diantaranya level 1 (tahap pengenalan, level 2 (tahap analisis, level 3 (tahap pengurutan, level 4 (tahap deduksi, dan level 5 (tahap ketepatan. Tujuan dari penelitian ini adalah untuk mendeskripsikan level berpikir geometri siswa sekolah menengah pertama. Ada 209 siswa yang masuk dalam penelitian ini. Metode penelitian yang digunakan adalah metode campuran. Intrumen tes yang digunakan diadaptasi dari Proyek CDASSG Usiskin. Hasilnya menunjukkan ada 28,71% siswa SMP berada pada level 1, 44,02% siswa berada pada level 2 dan 5,26 siswa berada pada level 3. Ada 1,91% siswa berada pada level 0, dan tidak ada siswa yang berada pada level 4 dan 5. Siswa Ada sekitar 20,10% tidak dapat dikelompokkan ke dalam level yang ada dikarenakan tidak memenuhi kriteria dari instrumen penelitian. Berdasarkan hasil ini, siswa kebanyakan masih berada pada level 1 dan 2. Tidak seperti pendapat van Hiele yang menyatakan bahwa level berpikir geometri untuk siswa SMP berada di level 3. Berdasarkan hasil penelitian ini, penting untuk melakukan pemerikasaan lebih lanjut mengenai level berpikir geometri siswa SMP di tempat lain.

  15. Analisis Kemampuan Kognitif Mahasiswa pada Konsep Asam-Basa Menggunakan Tes Berdasarkan Taksonomi Bloom Revisi

    Directory of Open Access Journals (Sweden)

    Euis Nursa'adah

    2016-01-01

    Full Text Available Abstract: Concept of acid-base is one concept that has characteristics abstract concept with concrete example. To understanding of these concepts requires knowledge of factual, conceptual, procedural, and Meta-cognitive dimension and also cognitive processes with applying, analyzing, evaluating and creating. Through a descriptive study to analyze the cognitive ability of students to determine how student can solve chemical problems used test based on Bloom's taxonomy revision. This study aims to analyze the cognitive abilities of students on the dimensions of knowledge and processes about acid-base concept. Subjects were 39 students of chemistry education UIN Sunan Gunung Djati Bandung. Based on the results show that students abilities of conceptual knowledge reaches the highest percentage of 80% conceptual, 63% procedural, and Meta-cognitive 70%. While the cognitive processes 85% applying, 79% analyzing, 77% evaluating, and 34% creating.Keywords: Cognitive skill, Acid-Base, Bloom's Taxonomy RevisionAbstrak: Konsep asam basa merupakan salah satu konsep kimia yang memiliki karakteristik abstrak contoh konkret. Pemahaman konsep tersebut membutuhkan pengetahuan faktual, konseptual, prosedural dan metakognitif dengan dimensi proses kognitif mengaplikasikan, menganalisis, mengevaluasi dan mencipta. Melalui penelitian deskriptif dilakukan analisis kemampuan kognitif mahasiswa untuk mendeskripsikan kemampuan mahasiswa dalam memecahkan masalah kimia berdasarkan konsep dasar yang dimilikinya dengan menggunakan perangkat tes berdasarkan taksonomi Bloom revisi pada konsep asam-basa. Penelitian ini melibatkan mahasiswa semester II pendidikan kimia UIN Sunan Gunung Djati Bandung yang berjumlah 39 mahasiswa. Instrumen yang digunakan adalah tes uraian yang sebelumnya divalidasi dan diuji reabilitasnya. Hasil penelitian menunjukkan kemampuan kognitif mahasiswa pada dimensi pengetahuan konseptual mencapai presentase tertinggi sebesar 80%, prosedural 63%, dan

  16. Structural elucidation and functional characterization of the Hyaloperonospora arabidopsidis effector protein ATR13.

    Directory of Open Access Journals (Sweden)

    Lauriebeth Leonelli

    2011-12-01

    Full Text Available The oomycete Hyaloperonospora arabidopsidis (Hpa is the causal agent of downy mildew on the model plant Arabidopsis thaliana and has been adapted as a model system to investigate pathogen virulence strategies and plant disease resistance mechanisms. Recognition of Hpa infection occurs when plant resistance proteins (R-genes detect the presence or activity of pathogen-derived protein effectors delivered to the plant host. This study examines the Hpa effector ATR13 Emco5 and its recognition by RPP13-Nd, the cognate R-gene that triggers programmed cell death (HR in the presence of recognized ATR13 variants. Herein, we use NMR to solve the backbone structure of ATR13 Emco5, revealing both a helical domain and a disordered internal loop. Additionally, we use site-directed and random mutagenesis to identify several amino acid residues involved in the recognition response conferred by RPP13-Nd. Using our structure as a scaffold, we map these residues to one of two surface-exposed patches of residues under diversifying selection. Exploring possible roles of the disordered region within the ATR13 structure, we perform domain swapping experiments and identify a peptide sequence involved in nucleolar localization. We conclude that ATR13 is a highly dynamic protein with no clear structural homologues that contains two surface-exposed patches of polymorphism, only one of which is involved in RPP13-Nd recognition specificity.

  17. In-situ ATR-FTIR for characterization of thin biorelated polymer films

    Energy Technology Data Exchange (ETDEWEB)

    Müller, M., E-mail: mamuller@ipfdd.de [Leibniz Institute of Polymer Research Dresden (IPF Dresden), Hohe Straße 6, 01069 Dresden (Germany); Technical University of Dresden (TUD), Department of Chemistry and Food Chemistry, 01062 Dresden (Germany); Torger, B. [Leibniz Institute of Polymer Research Dresden (IPF Dresden), Hohe Straße 6, 01069 Dresden (Germany); Technical University of Dresden (TUD), Department of Chemistry and Food Chemistry, 01062 Dresden (Germany); Bittrich, E. [Leibniz Institute of Polymer Research Dresden (IPF Dresden), Hohe Straße 6, 01069 Dresden (Germany); Kaul, E.; Ionov, L. [Leibniz Institute of Polymer Research Dresden (IPF Dresden), Hohe Straße 6, 01069 Dresden (Germany); Technical University of Dresden (TUD), Department of Chemistry and Food Chemistry, 01062 Dresden (Germany); Uhlmann, P. [Leibniz Institute of Polymer Research Dresden (IPF Dresden), Hohe Straße 6, 01069 Dresden (Germany); Stamm, M. [Leibniz Institute of Polymer Research Dresden (IPF Dresden), Hohe Straße 6, 01069 Dresden (Germany); Technical University of Dresden (TUD), Department of Chemistry and Food Chemistry, 01062 Dresden (Germany)

    2014-04-01

    We present and review in-situ-attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopic data from thin biorelated polymer films useful for the modification and functionalization of polymer and inorganic materials and discuss their applications related to life sciences. A special ATR mirror attachment operated by the single-beam-sample-reference (SBSR) concept and housing a homebuilt thermostatable flow cell was used, which allows for appropriate background compensation and signal to noise ratio. ATR-FTIR data on the reactive deposition of dopamine on inorganic model surfaces are shown. Information on the structure and deposition pathway for such bioinspired melanin-like films is provided. ATR-FTIR data on thermosensitive polymer brushes of poly(N-isopropylacrylamide) (PNIPAAM) is then presented. The thermotropic hydration and hydrogen bonding behavior of PNIPAAM brush films is described. Finally, ATR-FTIR data on biorelated polyelectrolyte multilayers (PEM) are given together with details on PEM growth and detection. Applications of these latter films for biopassivation/activation and local drug delivery are addressed.

  18. The essential kinase ATR: ensuring faithful duplication of a challenging genome.

    Science.gov (United States)

    Saldivar, Joshua C; Cortez, David; Cimprich, Karlene A

    2017-10-01

    One way to preserve a rare book is to lock it away from all potential sources of damage. Of course, an inaccessible book is also of little use, and the paper and ink will continue to degrade with age in any case. Like a book, the information stored in our DNA needs to be read, but it is also subject to continuous assault and therefore needs to be protected. In this Review, we examine how the replication stress response that is controlled by the kinase ataxia telangiectasia and Rad3-related (ATR) senses and resolves threats to DNA integrity so that the DNA remains available to read in all of our cells. We discuss the multiple data that have revealed an elegant yet increasingly complex mechanism of ATR activation. This involves a core set of components that recruit ATR to stressed replication forks, stimulate kinase activity and amplify ATR signalling. We focus on the activities of ATR in the control of cell cycle checkpoints, origin firing and replication fork stability, and on how proper regulation of these processes is crucial to ensure faithful duplication of a challenging genome.

  19. Seeded growth fabrication of Cu-on-Si electrodes for in situ ATR-SEIRAS applications

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Hui-Feng [Shanghai Key Laboratory for Molecular Catalysis and Innovative Materials and Department of Chemistry, Fudan University, Shanghai 200433 (China); Yan, Yan-Gang [Shanghai Key Laboratory for Molecular Catalysis and Innovative Materials and Department of Chemistry, Fudan University, Shanghai 200433 (China); Huo, Sheng-Juan [Shanghai Key Laboratory for Molecular Catalysis and Innovative Materials and Department of Chemistry, Fudan University, Shanghai 200433 (China); Cai, Wen-Bin [Shanghai Key Laboratory for Molecular Catalysis and Innovative Materials and Department of Chemistry, Fudan University, Shanghai 200433 (China); Department of Enviromental Engineering, Shanghai University of Electric Power, Shanghai 200090 (China); E-mail: wbcai@fudan.edu.cn; Xu, Qun-Jie [Department of Enviromental Engineering, Shanghai University of Electric Power, Shanghai 200090 (China); Osawa, Masatoshi [Catalysis Research Center, Hokkaido University, Sapporo 001-0021 (Japan)

    2007-05-25

    A seeded-growth approach has been developed to fabricate a Cu nanoparticle film (simplified hereafter with nanofilm) on Si for electrochemical ATR surface-enhanced infrared absorption spectroscopy (ATR-SEIRAS). The approach comprises an initial activation of the reflecting plane of hemicylindrical Si prism by introducing a Cu seed layer in a CuSO{sub 4}-HF solution and the subsequent electroless deposition of the Cu nanofilms from an electroless Cu plating bath. The as-deposited Cu nanofilm exhibited strong SEIRA effect for the CO probe and interfacial free H{sub 2}O. ATR-SEIRAS was also applied to characterize the adsorbed geometries of pyridine at the Cu/electrolyte interface. Only vibrational bands assignable to the A {sub 1} symmetry modes were detected in the entire potential window investigated, suggestive of an end-on adsorption via the ring N-atom on a Cu electrode.

  20. ATM, ATR, and DNA-PK: The Trinity at the Heart of the DNA Damage Response.

    Science.gov (United States)

    Blackford, Andrew N; Jackson, Stephen P

    2017-06-15

    In vertebrate cells, the DNA damage response is controlled by three related kinases: ATM, ATR, and DNA-PK. It has been 20 years since the cloning of ATR, the last of the three to be identified. During this time, our understanding of how these kinases regulate DNA repair and associated events has grown profoundly, although major questions remain unanswered. Here, we provide a historical perspective of their discovery and discuss their established functions in sensing and responding to genotoxic stress. We also highlight what is known regarding their structural similarities and common mechanisms of regulation, as well as emerging non-canonical roles and how our knowledge of ATM, ATR, and DNA-PK is being translated to benefit human health. Copyright © 2017 Elsevier Inc. All rights reserved.

  1. 10 CFR 830 Major Modification Determination for Replacement of ATR Primary Coolant Pumps and Motors

    Energy Technology Data Exchange (ETDEWEB)

    Noel Duckwitz

    2011-05-01

    The continued safe and reliable operation of the ATR is critical to the Department of Energy (DOE) Office of Nuclear Energy (NE) mission. While ATR is safely fulfilling current mission requirements, a variety of aging and obsolescence issues challenge ATR engineering and maintenance personnel’s capability to sustain ATR over the long term. First documented in a series of independent assessments, beginning with an OA Environmental Safety and Health Assessment conducted in 2003, the issues were validated in a detailed Material Condition Assessment (MCA) conducted as a part of the ATR Life Extension Program in 2007.Accordingly, near term replacement of aging and obsolescent original ATR equipment has become important to ensure ATR capability in support of NE’s long term national missions. To that end, a mission needs statement has been prepared for a non-major system acquisition which is comprised of three interdependent subprojects. The first project will replace the existent diesel-electrical bus (E-3), switchgear, and the 50-year-old obsolescent marine diesels with commercial power that is backed with safety related emergency diesel generators, switchgear, and uninterruptible power supply (UPS). The second project, the subject of this major modification determination, will replace the four, obsolete, original primary coolant pumps (PCPs) and motors. Completion of this and the two other age-related projects (replacement of the ATR diesel bus [E-3] and switchgear and replacement of the existent emergency firewater injection system) will resolve major age-related operational issues plus make a significant contribution in sustaining the ATR safety and reliability profile. The major modification criteria evaluation of the project pre-conceptual design identified several issues that lead to the conclusion that the project is a major modification: 1. Evaluation Criteria #3 (Change of existing process). The proposed strategy for equipping the replacement PCPs with VFDs

  2. Status of ATR-A1 irradiation experiment on vanadium alloys and low-activation steels

    Energy Technology Data Exchange (ETDEWEB)

    Tsai, H.; Strain, R.V.; Gomes, I.; Smith, D.L. [Argonne National Lab., IL (United States); Matsui, H. [Tohoku Univ. (Japan)

    1996-10-01

    The ATR-A1 irradiation experiment was a collaborative U.S./Japan effort to study at low temperature the effects of neutron damage on vanadium alloys. The experiment also contained a limited quantity of low-activation ferritic steel specimens from Japan as part of the collaboration agreement. The irradiation started in the Advanced Test Reactor (ATR) on November 30, 1995, and ended as planned on May 5, 1996. Total exposure was 132.9 effective full power days (EFPDs) and estimated neutron damage in the vanadium was 4.7 dpa. The vehicle has been discharged from the ATR core and is scheduled to be disassembled in the next reporting period.

  3. Measured Thermal and Fast Neutron Fluence Rates for ATF-1 Holders During ATR Cycle 157D

    Energy Technology Data Exchange (ETDEWEB)

    Smith, Larry Don [Idaho National Lab. (INL), Idaho Falls, ID (United States); Miller, David Torbet [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2016-03-01

    This report contains the thermal (2200 m/s) and fast (E>1MeV) neutron fluence rate data for the ATF-1 holders located in core for ATR Cycle 157D which were measured by the Radiation Measurements Laboratory (RML) as requested by the Power Reactor Programs (ATR Experiments) Radiation Measurements Work Order. This report contains measurements of the fluence rates corresponding to the particular elevations relative to the 80-ft. core elevation. The data in this report consist of (1) a table of the ATR power history and distribution, (2) a hard copy listing of all thermal and fast neutron fluence rates, and (3) plots of both the thermal and fast neutron fluence rates. The fluence rates reported are for the average power levels given in the table of power history and distribution.

  4. SAR image dataset of military ground targets with multiple poses for ATR

    Science.gov (United States)

    Belloni, Carole; Balleri, Alessio; Aouf, Nabil; Merlet, Thomas; Le Caillec, Jean-Marc

    2017-10-01

    Automatic Target Recognition (ATR) is the task of automatically detecting and classifying targets. Recognition using Synthetic Aperture Radar (SAR) images is interesting because SAR images can be acquired at night and under any weather conditions, whereas optical sensors operating in the visible band do not have this capability. Existing SAR ATR algorithms have mostly been evaluated using the MSTAR dataset.1 The problem with the MSTAR is that some of the proposed ATR methods have shown good classification performance even when targets were hidden,2 suggesting the presence of a bias in the dataset. Evaluations of SAR ATR techniques are currently challenging due to the lack of publicly available data in the SAR domain. In this paper, we present a high resolution SAR dataset consisting of images of a set of ground military target models taken at various aspect angles, The dataset can be used for a fair evaluation and comparison of SAR ATR algorithms. We applied the Inverse Synthetic Aperture Radar (ISAR) technique to echoes from targets rotating on a turntable and illuminated with a stepped frequency waveform. The targets in the database consist of four variants of two 1.7m-long models of T-64 and T-72 tanks. The gun, the turret position and the depression angle are varied to form 26 different sequences of images. The emitted signal spanned the frequency range from 13 GHz to 18 GHz to achieve a bandwidth of 5 GHz sampled with 4001 frequency points. The resolution obtained with respect to the size of the model targets is comparable to typical values obtained using SAR airborne systems. Single polarized images (Horizontal-Horizontal) are generated using the backprojection algorithm.3 A total of 1480 images are produced using a 20° integration angle. The images in the dataset are organized in a suggested training and testing set to facilitate a standard evaluation of SAR ATR algorithms.

  5. APE2 is required for ATR-Chk1 checkpoint activation in response to oxidative stress.

    Science.gov (United States)

    Willis, Jeremy; Patel, Yogin; Lentz, Barry L; Yan, Shan

    2013-06-25

    The base excision repair pathway is largely responsible for the repair of oxidative stress-induced DNA damage. However, it remains unclear how the DNA damage checkpoint is activated by oxidative stress at the molecular level. Here, we provide evidence showing that hydrogen peroxide (H2O2) triggers checkpoint kinase 1 (Chk1) phosphorylation in an ATR [ataxia-telangiectasia mutated (ATM) and Rad3-related]-dependent but ATM-independent manner in Xenopus egg extracts. A base excision repair protein, Apurinic/apyrimidinic (AP) endonuclease 2 (APE2, APN2, or APEX2), is required for the generation of replication protein A (RPA)-bound single-stranded DNA, the recruitment of a checkpoint protein complex [ATR, ATR-interacting protein (ATRIP), and Rad9] to damage sites, and H2O2-induced Chk1 phosphorylation. A conserved proliferating cell nuclear antigen interaction protein box of APE2 is important for the recruitment of APE2 to H2O2-damaged chromatin. APE2 3'-phosphodiesterase and 3'-5' exonuclease activity is essential for single-stranded DNA generation in the 3'-5' direction from single-stranded breaks, referred to as single-stranded break end resection. In addition, APE2 associates with Chk1, and a serine residue (S86) in the Chk1-binding motif of APE2 is essential for Chk1 phosphorylation, indicating a Claspin-like but distinct role for APE2 in ATR-Chk1 signaling. Our data indicate that APE2 plays a vital and previously unexpected role in ATR-Chk1 checkpoint signaling in response to oxidative stress. Thus, our findings shed light on a distinct mechanism of how an ATR-Chk1-dependent DNA damage checkpoint is mediated by APE2 in the oxidative stress response.

  6. 10 CFR 830 Major Modification Determination for the ATR Diesel Bus (E-3) and Switchgear Replacement

    Energy Technology Data Exchange (ETDEWEB)

    Noel Duckwtiz

    2011-05-01

    Near term replacement of aging and obsolescent original ATR equipment has become important to ensure ATR capability in support of NE’s long term national missions. To that end, a mission needs statement has been prepared for a non-major system acquisition which is comprised of three interdependent subprojects. The first project, subject of this determination, will replace the existent diesel-electrical bus (E-3) and associated switchgear. More specifically, INL proposes transitioning ATR to 100% commercial power with appropriate emergency backup to include: • Provide commercial power as the normal source of power to the ATR loads currently supplied by diesel-electric power. • Provide backup power to the critical ATR loads in the event of a loss of commercial power. • Replace obsolescent critical ATR power distribution equipment, e.g., switchgear, transformers, motor control centers, distribution panels. Completion of this and two other age-related projects (primary coolant pump and motor replacement and emergency firewater injection system replacement) will resolve major age related operational issues plus make a significant contribution in sustaining the ATR safety and reliability profile. The major modification criteria evaluation of the project pre-conceptual design identified several issues make the project a major modification: 1. Evaluation Criteria #2 (Footprint change). The addition of a new PC-4 structure to the ATR Facility to house safety-related SSCs requires careful attention to maintaining adherence to applicable engineering and nuclear safety design criteria (e.g., structural qualification, fire suppression) to ensure no adverse impacts to the safety-related functions of the housed equipment. 2. Evaluation Criteria #3 (Change of existing process). The change to the strategy for providing continuous reliable power to the safety-related emergency coolant pumps requires careful attention and analysis to ensure it meets a project primary object

  7. Alterations in ATR in nasal NK/T-cell lymphoma and chronic active Epstein-Barr virus infection.

    Science.gov (United States)

    Liu, Angen; Takakuwa, Tetsuya; Luo, Wen-Juan; Fujita, Shigeki; Aozasa, Katsuyuki

    2006-07-01

    Nasal natural killer (NK)/T-cell lymphoma (NKTCL) and chronic active Epstein-Barr virus infection (CAEBV) are relatively frequent, especially in Asia, and are poor in prognosis. Both diseases are proliferative diseases of NK/T cells that show highly complicated karyotypes, suggesting the involvement of chromosomal instability. ATR is an important gene for DNA damage response and chromosomal stability. To evaluate the role of ATR gene alterations in the pathogenesis of NKTCL and CAEBV, the whole coding region of the ATR gene was examined in cell lines derived from NKTCL and CAEBV, as well as tumor samples from patients. ATR alterations were detected in two of eight NKTCL and in one of three CAEBV lines. Most aberrant transcripts observed were deletions resulting from aberrant splicing. ATR alterations were also detected in four of 10 NKTCL clinical samples. Both NKTCL and CAEBV cell lines with ATR alterations showed a delay or abrogation in repair of ionizing radiation-induced DNA double-strand breaks and ultraviolet-induced DNA single-strand breaks, and both exhibited a defect in p53 accumulation. These findings show that alterations in the ATR gene result in an abnormal response to DNA double-strand break and single-strand break repair, suggesting a role for ATR gene alterations in NKTCL lymphomagenesis.

  8. Small-molecule inhibitors of Ataxia Telangiectasia and Rad3 related kinase (ATR) sensitize lymphoma cells to UVA radiation

    DEFF Research Database (Denmark)

    Biskup, Edyta; Naym, David Gram; Gniadecki, Robert

    2016-01-01

    and require more aggressive therapies. OBJECTIVE: The aim of this project was to investigate whether inhibition of Ataxia Telangiectasia and Rad3 related kinase (ATR) may enhance efficacy of phototherapy. METHODS: CTCL cell lines (MyLa2000, SeAx and Mac2a) served as in vitro cell models. ATR and Chk1 were...

  9. ATR-FTIR Spectroscopy in the Undergraduate Chemistry Laboratory: Part II--A Physical Chemistry Laboratory Experiment on Surface Adsorption

    Science.gov (United States)

    Schuttlefield, Jennifer D.; Larsen, Sarah C.; Grassian, Vicki H.

    2008-01-01

    Attenuated total reflectance-Fourier transform infrared (ATR-FTIR) spectroscopy is a useful technique for measuring the infrared spectra of solids and liquids as well as probing adsorption on particle surfaces. The use of FTIR-ATR spectroscopy in organic and inorganic chemistry laboratory courses as well as in undergraduate research was presented…

  10. ANALISIS KEMAMPUAN BERPIKIR KRITIS MATEMATIS MAHASISWA DALAM MENYELESAIKAN SOAL URAIAN KALKULUS INTEGRAL BERDASARKAN LEVEL KEMAMPUAN MAHASISWA

    Directory of Open Access Journals (Sweden)

    Zetriuslita Zetriuslita

    2016-02-01

    Full Text Available Penelitian ini bertujuan untuk menggambarkan kemampuan mahasiswa dalam menyelesaikan setiap soal uraian kalkulus integral yang disusun berdasarkan indikator kemampuan berpikir kritis matematis dan berdasarkan level akademik mahasiswa. Bentuk penelitian yang digunakan adalah penelitian kualitatif.  Subyek dalam penelitian ini adalah mahasiswa semester 2 tahun ajaran 2014/2015 Program Studi Pendidikan Matematika FKIP UIR Pekanbaru yang sedang mengikuti mata kuliah kalkulus 2 berjumlah sebanyak 115 orang. Subjek dibagi atas tiga kelompok yaitu mahasiswa pada level kemampuan tinggi (10 orang, mahasiswa pada level kemampuan sedang (88 orang, dan mahasiswa pada level kemampuan rendah (17 orang. Teknik pengumpulan data dalam penelitian ini menggunakan teknik tes dan wawancara. Pengolahan keabsahan data menggunakan teknik triangulasi (mereduksi data, penyajian data, dan penarikan kesimpulan. Berdasarkan hasil penelitian diketahui bahwa: (1 Mahasiswa pada level kemampuan tinggi yang menjawab dengan benar soal pada indikator 1 sebanyak 4 orang (40%, indikator 2 sebanyak 8 orang (80%, dan indikator 3 sebanyak 5 orang (50%; (2 Mahasiswa pada level kemampuan sedang yang menjawab dengan benar soal pada indikator 1 sebanyak 5 orang (5,68%, indikator 2 sebanyak 75 orang (85,23%, dan indikator 3 sebanyak 8 orang (9,09%; (3 Mahasiswa pada level kemampuan rendah yang menjawab dengan benar soal pada indikator 1 sebanyak 0 orang (0%, indikator 2 sebanyak 13 orang (68,42%, indikator 3 sebanyak 5 orang (26,32%; (4 Secara keseluruhan, indikator 1 sebanyak 9 orang (7,69%, indikator 2 sebanyak 96 orang (82,05%, dan indikator 3 sebanyak 18 orang (15,38%.   This research aims to describe the ability of students to solve any problem at integral calculus course which is based indicators of mathematical critical thinking ability and  level mathematical ability of students. Research method used in this study is a qualitative research. Subjects in this study were students of

  11. Penentuan Karakteristik Tremor Gunungapi Semeru Jawa Timur Berdasarkan Analisis Spektral (Studi Kasus: Oktober 2015-Desember 2015

    Directory of Open Access Journals (Sweden)

    Dea Hertiara Municha

    2016-06-01

    Full Text Available Gunungapi Semeru merupakan salah satu gunung aktif di Indonesia dengan tipe erupsi vulkanian dan strombolian. Penelitian ini menggunakan data seismik digital G. Semeru yang terekam pada bulan Oktober 2015- Desember 2015. Data yang akan digunakan dalam penelitian ini yaitu data tremor vulkanik gunungapi Semeru. Penelitian ini bertujuan untuk mengetahui perubahan aktivitas vulkanik yang berdasarkan pada perubahan kegiatan tremor vulkanik. Tremor vulkanik merupakan gempa yang sering terjadi di sekitar gunungapi, gempa ini terjadi akibat aktivitas pergerakan magma ke atas di dalam gunungapi. Salah satu cara untuk mengetahui karakteristik aktivitas Gunung Semeru yaitu dengan analisis spektral. Analisis spektral ini dilakukan dengan menerapkan Fast Fourier Transform. Tujuan dari transformasi ini adalah untuk merubah sinyal dari domain waktu ke domain frekuensi sehinggal diperoleh spektrum frekuensi dari sinyal-sinyal vulkanik. Berdasarkan analisis spektral pada gunung Semeru ini didominasi tremor harmonik yang memiliki ciri-ciri bentuk sinyal puncak spektral yang teratur serta memiliki frekuensi dasar tremor harmonik berkisar 0.1 Hz-2 Hz, sedangkan frekuensi dominan tremor harmonik berkisar 0.2 Hz-3.5 Hz, serta kandungan frekuensi tremor G. Semeru tergolong rendah. Serta terjadi perubahan tertinggi frekuensi dasar dan frekuensi dominan pada stasiun Puncak. Semeru Volcano is one of the active volcanoes in Indonesia with the types of volcanian and strombolian eruptions. This research used digital seismic data of Semeru Volcano that had been recorded on October 2015 to December 2015. The data used in this research was data volcanic tremor of Semeru volcano. This study aimed to determine the changes in volcanic activities based on changes in volcanic tremor activities. Volcanic tremors are frequent earthquakes that are occurred around volcanoes, these earthquakes occurred due to magma movements upward in the volcano. One way to characterize the activity

  12. IDENTIFIKASI JENIS OBAT BERDASARKAN GAMBAR LOGO PADA KEMASAN MENGGUNAKAN METODE NAIVE BAYES

    Directory of Open Access Journals (Sweden)

    Surya Rahayuda

    2016-10-01

    Full Text Available There many types of drugs have been approved by the government and circulating in the community, but many people don’t know. In this study, I want to create an application that can identify the type of drug based on the logo on the packaging. I’m using 4 different types of modern medicine and 3 types of herbal medicine, total there will be as many as 7 different logo that will be used. Pictures will be entered into the application, then detected the edges of the image using the Edge Detection, to get the shape of the logo image, after it is extracted using methods GLCM, extraction will produce output in the form of numbers, the numeric data is then classified using Naïve Bayes classification and will get the results in the form of the type of drug. From the experiments it was found that the resulting level of accuracy is quite high, there are 3 categories of types of drugs that have a high accuracy on Obat Bebas, Obat Bebas Terbatas and Obat Keras. From the results of these trials concluded that the Naïve Bayes method can be used to mengkalsifikasi types of drugs is based on the logo on the packaging of drugs. Keywords: logo, drug, image processing, edge detection, GLCM, naïve bayes Terdapat banyak jenis obat telah disetujui oleh pemerintah dan beredar di masyarakat, namun banyak masyarakat tidak mengetahuinya. Pada penelitian ini saya ingin membuat suatu aplikasi yang dapat mengindentifikasi jenis obat berdasarkan logo pada kemasan. Saya menggunakan 4 jenis obat moderen dan 3 jenis obat herbal, total akan terdapat sebanyak 7 macam logo yang akan digunakan. Gambar akan diinputkan ke dalam aplikasi, kemudian dideteksi tepian gambarnya menggunakan metode Edge Detection, untuk mendapatkan bentuk dari gambar logo, setelah itu diekstraksi menggunakan metode GLCM, hasil ekstraksi akan menghasilkan output berupa angka, data angka ini kemudian diklasifikasikan menggunakan metode Naïve Bayes dan akan mendapatkan hasil klasifikasi berupa jenis

  13. ANALISIS KERUSAKAN DINDING SIMPAI BERDASARKAN TINJAUAN STRUKTURAL Kasus: Rumah –Rumah di Pontianak, Kalimantan Barat

    Directory of Open Access Journals (Sweden)

    Lestari Lestari

    2013-07-01

    Full Text Available ABSTRAK . Analisis Kerusakan Dinding Simpai Berdasarkan Tinjauan Struktural (Lestari ANALISIS KERUSAKAN DINDING SIMPAI BERDASARKAN TINJAUAN STRUKTURAL Kasus: Rumah –Rumah di Pontianak, Kalimantan Barat Lestari Program Studi Arsitektur Fakultas Teknik Universitas Tanjungpura Jalan Ahmad Yani Pontianak 78124 Kalimantan Barat email: lest_tazkiya@yahoo.com Dinding simpai merupakan istilah yang dikenal oleh masyarakat khususnya di Kalimantan Barat untuk dinding plesteran semen dengan perkuatan kawat/ plat baja. Metode membangun dinding ini banyak digunakan pada rumah tinggal dan khusus digunakan pada struktur rangka kayu. Rangka kayu sekaligus sebagai rangka dinding, sehingga dinding sangat erat kaitannya dengan struktur yang digunakan. Dinding simpai ada yang kuat dan bertahan lama namun ada pula yang mengalami kerusakan hanya beberapa tahun setelah pembangunan. Kerusakan umumnya muncul seiring dengan kerusakan struktural. Penelitian ini bertujuan untuk menganalisis kerusakan pada dinding simpai khususnya akibat pengaruh struktural dengan mengidentifikasi karakteristik kerusakan. Dinding yang diteliti adalah dinding simpai yang digunakan sebagai selubung bangunan atau dinding luar. Metode observasi digunakan dalam pengumpulan data penelitian. Hasil analisis dapat diketahui bahwa kerusakan dinding simpai sangat erat kaitannya dengan kerusakan pada struktur yang digunakan. Kata kunci: kerusakan, dinding simpai, struktur ABSTRACT. Plester wall with reinforcement or as well known as simpai has long been known to build the wall of houses in West Kalimantan. This method is used particularly to build a wall on a wood frame structure. Wooden frame used as a framework of the wall. This cause the walls are related to the structure used. There are simpai walls durable for a long time but there are also have significant damage just a few years after construction. The damages generally occur as well as the structural damages. This study is aimed to analyze the

  14. PENGEMBANGAN BUKU PENGAYAAN MENULIS CERITA ANAK BERMUATAN NILAI KARAKTER BERDASARKAN CONTENT AND LANGUANGE INTEGRATED LEARNING (CLIL UNTUK SISWA SEKOLAH DASAR KELAS TINGGI

    Directory of Open Access Journals (Sweden)

    Qurrota Ayu Neina

    2015-03-01

    Full Text Available Tujuan penelitian ini adalah manganalisis kebutuhan, memaparkan pengembangan, dan menentukan keefektifan buku pengayaan menulis cerita anak bermuatan nilai karakter berdasarkan CLIL untuk siswa sekolah dasar kelas tinggi. Langkah penelitan yang digunakan dalam mengembangkan buku pengayaan menulis cerita anak bermuatan nilai karakter berdasarkan CLIL untuk siswa sekolah dasar kelas tinggi adalah research and development. Setelah melakukan penelitian, diperoleh hasil sebagai berikut: (1 berdasarkan hasil analisis kebutuhan siswa dan guru, rancangan yang disarankan untuk buku pengayaan menulis cerita anak berdasarkan CLIL berisi beberapa bagian, yaitu (a pengantar materi sebagai motivasi belajar, (b materi yang berisi langkah-langkah menulis cerita anak, (c cerita anak yang terintegrasi CLIL, (d panduan memahami nilai karakter, (e panduan untuk memahami ilmu IPA/IPS, dan (f latihan; (2 buku pengayaan menulis cerita anak bermuatan nilai karakter berdasarkan CLIL dikembangkan dengan memperhatikan prinsip-prinsip pengembangan aspek isi, penyajian, bahasa dan keterbacaan, serta kegrafikaan; dan (3 buku pengayaan menulis cerita anak bermuatan nilai karakter berdasarkan CLIL efektif bagi siswa SD kelas tinggi.

  15. PROFIL DISTRIBUSI DAN KONDISI MANGROVE BERDASARKAN PASANG SURUT AIR LAUT DI PULAU BANGKOBANGKOANG KECAMATAN LIUKANG TUPABBIRING KABUPATEN PANGKEP

    OpenAIRE

    HAYATI, NURUL FITRI

    2016-01-01

    NURUL FITRI HAYATI. L111 12 009. Profil Distribusi dan Kondisi Mangrove berdasarkan Pasang Surut Air Laut di Pulau bangkobangkoang Kecamatan Liukang Tupabbiring Kabupaten Pangkep. Dibimbing Oleh Bapak AMIR HAMZAH MUHIDDIN Selaku Pembimbing Utama dan Bapak MUHAMMAD ANSHAR AMRAN Selaku Pembimbing Anggota. Hutan mangrove merupakan komunitas vegetasi pantai tropis dan subtropis, yang mampu tumbuh dan berkembang pada daerah pasang surut. Penelitian ini bertujuan mendapatkan in...

  16. Analisis Kandungan Logam Seng (Zn) dalam Air Minum Isi Ulang di Kelurahan Tamalanrea Berdasarkan Metode Pengolahan Air

    OpenAIRE

    Anwar, Fitri

    2017-01-01

    Penelitian mengenai kandungan logam seng (Zn) dalam sampel air baku dan air minum isi ulang berdasarkan metode pengolahan air pada depot air minum isi ulang di kelurahan Tamalanrea, Kota Makassar telah dilakukan. Penelitian ini bertujuan untuk mengukur kandungan logam Zn dalam air minum isi ulang dan membandingkannya dengan standar menurut PERMENKES no. 492 tahun 2010, membandingkan kandungan logam seng dalam air minum setelah dan sebelum pengolahan serta membandingkan hasil tersebut berdasar...

  17. ATR controls cellular adaptation to hypoxia through positive regulation of hypoxia-inducible factor 1 (HIF-1) expression.

    Science.gov (United States)

    Fallone, F; Britton, S; Nieto, L; Salles, B; Muller, C

    2013-09-12

    Tumor cells adaptation to severe oxygen deprivation (hypoxia) plays a major role in tumor progression. The transcription factor HIF-1 (hypoxia-inducible factor 1), whose α-subunit is stabilized under hypoxic conditions is a key component of this process. Recent studies showed that two members of the phosphoinositide 3-kinase-related kinases (PIKKs) family, ATM (ataxia telangiectasia mutated) and DNA-PK (DNA-dependent protein kinase), regulate the hypoxic-dependent accumulation of HIF-1. These proteins initiate cellular stress responses when DNA damage occurs. In addition, it has been demonstrated that extreme hypoxia induces a replicative stress resulting in regions of single-stranded DNA at stalled replication forks and the activation of ATR (ataxia telangiectasia and Rad3 related protein), another member of the PIKKs family. Here, we show that even less severe hypoxia (0.1% O2) also induces activation of ATR through replicative stress. Importantly, in using either transiently silenced ATR cells, cells expressing an inactive form of ATR or cells exposed to an ATR inhibitor (CGK733), we demonstrate that hypoxic ATR activation positively regulates the key transcription factor HIF-1 independently of the checkpoint kinase Chk1. We show that ATR kinase activity regulates HIF-1α at the translational level and we find that the elements necessary for the regulation of HIF-1α translation are located within the coding region of HIF-1α mRNA. Finally, by using three independent cellular models, we clearly show that the loss of ATR expression and/or kinase activity results in the decrease of HIF-1 DNA binding under hypoxia and consequently affects protein expression levels of two HIF-1 target genes, GLUT-1 and CAIX. Taken together, our data show a new function for ATR in cellular adaptation to hypoxia through regulation of HIF-1α translation. Our work offers new prospect for cancer therapy using ATR inhibitors with the potential to decrease cellular adaptation in hypoxic

  18. Cyclohexene photo-oxidation over vanadia catalyst analyzed by time resolvedATR-FT-IT spectroscopy

    NARCIS (Netherlands)

    Mul, Guido; Wasylenko, W.; Sameh Hamdy, M.; Frei, H.

    2008-01-01

    Vanadia was incorporated in the 3-D mesoporous material TUD-1 with a loading of 2% w/w vanadia. The performance in the selective photo-oxidation of liquid cyclohexene was investigated using ATR-FT-IR spectroscopy. Under continuous illumination at 458 nm a significant amount of product,

  19. ATM/ATR-mediated phosphorylation of PALB2 promotes RAD51 function

    DEFF Research Database (Denmark)

    Ahlskog, Johanna K; Larsen, Brian D; Achanta, Kavya

    2016-01-01

    DNA damage activates the ATM and ATR kinases that coordinate checkpoint and DNA repair pathways. An essential step in homology-directed repair (HDR) of DNA breaks is the formation of RAD51 nucleofilaments mediated by PALB2-BRCA2; however, roles of ATM and ATR in this critical step of HDR are poorly...... understood. Here, we show that PALB2 is markedly phosphorylated in response to genotoxic stresses such as ionizing radiation and hydroxyurea. This response is mediated by the ATM and ATR kinases through three N-terminal S/Q-sites in PALB2, the consensus target sites for ATM and ATR Importantly, a phospho......-deficient PALB2 mutant is unable to support proper RAD51 foci formation, a key PALB2 regulated repair event, whereas a phospho-mimicking PALB2 version supports RAD51 foci formation. Moreover, phospho-deficient PALB2 is less potent in HDR than wild-type PALB2. Further, this mutation reveals a separation in PALB2...

  20. Hydroxyl accessibility in wood by deuterium exchange and ATR-FTIR spectroscopy

    DEFF Research Database (Denmark)

    Tarmian, Asghar; Burgert, Ingo; Thybring, Emil Engelund

    2017-01-01

    The accessibility of wood hydroxyls to water is commonly studied by infrared spectroscopy after deuteration where water-interacting hydroxyls have their H exchanged for D. In this study, the hydroxyl accessibility is determined with ATR-FTIR spectroscopy after deuteration of specimens with liquid D...

  1. 78 FR 42898 - Airworthiness Directives; ATR-GIE Avions de Transport Régional Airplanes

    Science.gov (United States)

    2013-07-18

    ... investigation into an ATR 72 accident in August 2005 have shown that overruling standard operational procedures... proposed AD was prompted by reports of airplane incidents and accidents that have occurred because of low.... ADDRESSES: You may send comments by any of the following methods: Federal eRulemaking Portal: Go to http...

  2. Dynamic generation of artificial HRSAR imagery for ATR development and cockpit simulation

    Science.gov (United States)

    Seidel, Heiko; Stahl, Christoph; Knappe, Peter; Hurst, Peter

    2004-09-01

    Following the tendency of increasingly using imaging sensors in military aircraft, future combat airplane pilots will need onboard artificial intelligence for aiding them in image interpretation and target designation. This document presents a system which is able to simulate high-resolution artificial SAR imagery and thereby facilitates automatic target recognition (ATR) algorithm development. The system provides a comprehensive interface that allows dynamically requesting imagery depending on the location and heading of a simulated carrier platform. Landscapes, structures and target signatures are generated based on digital terrain data and target models. An assessment of dissimilar database preparations for sensor simulation was done with respect to the different properties of SAR imaging compared to optical imaging. The document presents selected results for specific landscape elements. Post-processing algorithms for overcoming weaknesses of digital terrain databases and improving image realism are presented. Simulated sensor imagery is useful in a wide range of applications, two of which are training of ATR algorithms and sensor simulation in flight simulation environments. Using an existing ATR method as an example, the applicability and the influences of synthetic imagery on ATR training are shown and first approaches on how to validate the correctness of the imagery are explained. The integration of the system into a flight simulator in the context of interfacing and control topics serves as a concluding example.

  3. An in situ ATR-IR spectroscopy study of aluminas under aqueous phase reforming conditions

    NARCIS (Netherlands)

    Koichumanova, Kamila; Gupta, K.B. Sai Sankar; Lefferts, Leonardus; Mojet, Barbara; Seshan, Kulathuiyer

    2015-01-01

    High temperature/pressure in situ Attenuated Total Reflection Infrared (ATR-IR) spectroscopy was used to investigate the phase transformation of support γ-Al2O3 into boehmite (AlO(OH)) under the hydrothermal conditions of aqueous phase reforming (APR). Activation energy barriers of boehmite

  4. Increased Rrm2 gene dosage reduces fragile site breakage and prolongs survival of ATR mutant mice

    DEFF Research Database (Denmark)

    Lopez-Contreras, Andres J; Specks, Julia; Barlow, Jacqueline H

    2015-01-01

    of the RNR regulatory subunit RRM2 (Rrm2(TG)) present supraphysiological RNR activity and reduced chromosomal breakage at fragile sites. Moreover, increased Rrm2 gene dosage significantly extends the life span of ATR mutant mice. Our study reveals the first genetic condition in mammals that reduces fragile...

  5. Roles of ATR1 paralogs YMR279c and YOR378w in boron stress tolerance.

    Science.gov (United States)

    Bozdag, Gonensin Ozan; Uluisik, Irem; Gulculer, Gulce Sila; Karakaya, Huseyin C; Koc, Ahmet

    2011-06-17

    Boron is a necessary nutrient for plants and animals, however excess of it causes toxicity. Previously, Atr1 and Arabidopsis Bor1 homolog were identified as the boron efflux pump in yeast, which lower the cytosolic boron concentration and help cells to survive in the presence of toxic amount of boron. In this study, we analyzed ATR1 paralogs, YMR279c and YOR378w, to understand whether they participate in boron stress tolerance in yeast. Even though these genes share homology with ATR1, neither their deletion rendered cells boron sensitive nor their expression was significantly upregulated by boron treatment. However, expression of YMR279, but not YOR378w, from the constitutive GAPDH promoter on a high copy plasmid provided remarkable boron resistance by decreasing intracellular boron levels. Thus our results suggest the presence of a third boron exporter, YMR279c, which functions similar to ATR1 and provides boron resistance in yeast. Copyright © 2011 Elsevier Inc. All rights reserved.

  6. 76 FR 70044 - Airworthiness Directives; ATR-GIE Avions de Transport Régional Airplanes

    Science.gov (United States)

    2011-11-10

    ... require parts costing $960, for a cost of $6,060 per product. We have no way of determining the number of... condition on an aviation product. The MCAI describes the unsafe condition as: One ATR operator has... condition on these products. DATES: This AD becomes effective December 15, 2011. The Director of the Federal...

  7. Measured thermal and fast neutron fluence rates for ATF-1 holders during ATR cycle 160A

    Energy Technology Data Exchange (ETDEWEB)

    Walker, B. J. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Miller, D. T. [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2017-06-06

    This report contains the thermal (2200 m/s) and fast (E>1MeV) neutron fluence rate data for the ATF-1 holders located in core for ATR Cycle 160A which were measured by the Radiation Measurements Laboratory (RML).

  8. An add-on system including a micro-reactor for an atr-ir spectrometer

    DEFF Research Database (Denmark)

    2014-01-01

    The invention relates to an add-on system for an attenuated total reflectance infrared (ATR-IR) spectrometer, the add-on system allowing for time-resolved in situ IR measurements of heterogeneous mixtures. The add-on device comprises a micro-reactor (300A) forming a sample cavity (305) when...

  9. An add-on system for photochemical ATR-IR spectroscopy studies

    DEFF Research Database (Denmark)

    2014-01-01

    The invention relates to an add-on system for a unit mainly adapted for attenuated total reflectance infrared (ATR-IR) spectroscopy. The add-on system enables time-resolved in-situ measurements of different sample types in an easy, simple and inexpensive way. The add-on system includes a cap (300G...

  10. DNA-PKcs, ATM, and ATR Interplay Maintains Genome Integrity during Neurogenesis.

    Science.gov (United States)

    Enriquez-Rios, Vanessa; Dumitrache, Lavinia C; Downing, Susanna M; Li, Yang; Brown, Eric J; Russell, Helen R; McKinnon, Peter J

    2017-01-25

    The DNA damage response (DDR) orchestrates a network of cellular processes that integrates cell-cycle control and DNA repair or apoptosis, which serves to maintain genome stability. DNA-PKcs (the catalytic subunit of the DNA-dependent kinase, encoded by PRKDC), ATM (ataxia telangiectasia, mutated), and ATR (ATM and Rad3-related) are related PI3K-like protein kinases and central regulators of the DDR. Defects in these kinases have been linked to neurodegenerative or neurodevelopmental syndromes. In all cases, the key neuroprotective function of these kinases is uncertain. It also remains unclear how interactions between the three DNA damage-responsive kinases coordinate genome stability, particularly in a physiological context. Here, we used a genetic approach to identify the neural function of DNA-PKcs and the interplay between ATM and ATR during neurogenesis. We found that DNA-PKcs loss in the mouse sensitized neuronal progenitors to apoptosis after ionizing radiation because of excessive DNA damage. DNA-PKcs was also required to prevent endogenous DNA damage accumulation throughout the adult brain. In contrast, ATR coordinated the DDR during neurogenesis to direct apoptosis in cycling neural progenitors, whereas ATM regulated apoptosis in both proliferative and noncycling cells. We also found that ATR controls a DNA damage-induced G2/M checkpoint in cortical progenitors, independent of ATM and DNA-PKcs. These nonoverlapping roles were further confirmed via sustained murine embryonic or cortical development after all three kinases were simultaneously inactivated. Thus, our results illustrate how DNA-PKcs, ATM, and ATR have unique and essential roles during the DDR, collectively ensuring comprehensive genome maintenance in the nervous system. The DNA damage response (DDR) is essential for prevention of a broad spectrum of different human neurologic diseases. However, a detailed understanding of the DDR at a physiological level is lacking. In contrast to many in

  11. Perhitungan Kemiripan Term Co-occurence Berdasarkan Cluster Dokumen Untuk Pengembangan Thesaurus Bahasa Arab

    Directory of Open Access Journals (Sweden)

    Dika Rizky Yunianto

    2017-02-01

    Full Text Available Salah satu cara dalam pembentukan thesaurus adalah dengan cara menghitung nilai kemiripan term. Untuk mendapatkan nilai kemiripan tersebut dapat dilakukan dengan pendekatan co-occurence yaitu melihat frekuensi kemunculan bersama term-term tersebut. Frekuensi tersebut dilihat dari seberapa banyak term tersebut muncul bersama pada dokumen-dokumen corpus. Setiap dokumen-dokumen yang terdapat pada corpus memiliki konten atau topik yang berbeda-beda. Sehingga term-term yang berada pada dokumen suatu topik akan memiliki konteks yang berbeda dengan term-term pada dokumen dengan topik lainnya. Oleh sebab itu, paper ini mengusulkan metode baru dalam perhitungan kemiripan term dengan co-occurence yang memperhatikan cluster dari dokumen pada pengembangan thesaurus Bahasa Arab. Dokumen-dokumen corpus akan di clustering untuk mengelompokkan berdasarkan kedekatan konten dari dokumen tersebut. Untuk mendapatkan nilai kemiripan term dilakukan perhitungan clusterweight dengan memanfaatkan nilai dari inverse class frequency setiap term terhadap cluster yang ada. Thesaurus dibentuk dengan melihat nilai hasil perhitungan kemiripan term tersebut. Thesaurus yang dibentuk dengan metode usulan berhasil meningkatkan relevansi antar term dibuktikan dengan hasil percobaan memiliki nilai precision tertinngi sebesar 63,3%, recall sebesar 78,6% dan f-measure sebesar 50%.

  12. ANALISIS KESALAHAN SISWA SMP KELAS VII DALAM MENYELESAIKAN SOAL CERITA PEMECAHAN MASALAH BERDASARKAN PROSEDUR NEWMAN

    Directory of Open Access Journals (Sweden)

    Tuti Haryati

    2016-04-01

    Full Text Available Artikel ini didasarkan pada penelitian kualitatif. Tujuan penelitian ini adalah mendeskripsikan (1 tipe kesalahan siswa berdasarkan prosedur Newman yang dilakukan siswa kelas VII SMP Negeri 2 Wonosobo dalam menyelesaikan soal cerita pemecahan masalah; (2 penyebab kesalahan siswa tersebut; dan (3 solusi untuk meminimalkan kesalahan tersebut. Pengumpulan data dilakukan menggunakan metode tes dan wawancara. Subjek penelitian diambil 6 orang dari 32 siswa kelas VII E, masing-masing terdiri dari 2 siswa dari kelompok atas, sedang, bawah. Uji keabsahan data, dilakukan dengan triangulasi teknik. Hasil penelitian menunjukkan bahwa (1 semakin tinggi kategori pada prosedur Newman maka semakin banyak kesalahan yang dilakukan oleh siswa, subjek pada kelompok atas mengalami kesalahan pada tahap transfomasi, keterampilan proses, dan penulisan, subjek pada kelompok sedang mengalami kesalahan pada tahap trasformasi dan penulisan, serta subjek pada kelompok bawah mengalami kesalahan pada tahap memahami dan transformasi; (2 penyebabnya yaitu siswa tidak utuh dalam mengidentifikasi informasi yang diketahui dan yang ditanyakan, tidak tepat memanipulasi aljabar dari soal, kesalahan dalam melakukan operasi aljabar, tidak membuat kesimpulan, serta siswa tersebut tidak sengaja melakukan kesalahan namun siswa tersebut dapat memperbaiki kesalahannya; dan (3 solusi untuk meminimalkan kesalahan tersebut yaitu siswa perlu lebih banyak dilatih untuk menyelesaikan soal-soal tidak rutin sehingga siswa akan terampil dalam menyelesaikannya

  13. EVALUASI SARANA DAN PRASARANA BENGKEL PRAKTIK SMK TEKNIK PEMESINAN DI KOTA SEMARANG BERDASARKAN KEBUTUHAN KURIKULUM

    Directory of Open Access Journals (Sweden)

    Sudiyono Sudiyono

    2016-03-01

    Full Text Available Penelitian ini bertujuan untuk mengetahui: (1 kondisi sarana dan prasarana bengkel praktik SMK teknik pemesinan di Kota Semarang berdasarkan persepsi guru pengampu dan tool men, (2 ting-kat kesesuaiannya terhadap standar minimal Permendiknas Nomor 40 tahun 2008, dan (3 tingkat kecukupannya terhadap kebutuhan kurikulum. Penelitian ini merupakan penelitian evaluasi dengan model evaluasi diskrepansi. Pendekatan yang digunakan yaitu deskriptif kuantitatif dengan analisis persentase. Teknik pengumpulan data menggunakan analisis dokumen, wawancara, dan observasi. Teknik analisis yang digunakan adalah statistik deskriptif. Hasil penelitian menunjukkan bahwa: (1 Kondisi sarana dan prasarana bengkel praktik SMK Teknik Pemesinan di Kota Semarang menurut persepsi guru pengampu dan tool men pada SMK negeri maupun swasta sudah dinyatakan layak, (2 Prasarana pada SMK negeri sesuai dengan standar minimal, sedangkan pada SMK swasta cukup sesuai, (3 Sarana pada SMK negeri sangat sesuai dengan standar mini-mal, sedangkan pada SMK swasta sesuai standar, (4 Prasarana pada SMK negeri cukup meme-nuhi kebutuhan kurikulum, sedangkan pada SMK swasta kurang memenuhi, (5 Sarana pada SMK negeri cukup memenuhi kebutuhan kurikulum, sedangkan pada SMK swasta kurang memenuhi.

  14. PENGEMBANGAN MODUL EVOLUSI PRIMATA INDONESIA BERDASARKAN HASIL PENELITIAN BAGI MAHASISWA S1 PENDIDIKAN BIOLOGI

    Directory of Open Access Journals (Sweden)

    Suparno Putera Makkadafi

    2017-08-01

    Full Text Available The purpose of this research is to develop a module based on research for undergraduate students in Biology Education Mulawarman University. Result of development is a module from design phase and validate by subject expert, instructional media expert, and small group test. Validation result from subject expert is 84,38%, in valid enough category and result from instructional media expert is 94,16% in valid category. Small group test result is 82% in valid ebough category. Validation results in qualitative and quantitative data is used to revised module. Penelitian ini bertujuan untuk menghasilkan produk berupa modul berdasarkan hasil penelitian untuk mahasiswa S1 Pendidikan Biologi Universitas Mulawarman. Hasil pengembangan berupa draft modul hasil tahap desain kemudian divalidasi oleh ahli materi, ahli media pembelajaran, serta dilakukan uji kelompok kecil. Hasil validasi ahli materi adalah sebesar  84,38% dan masuk dalam kategori cukup valid, sedangkan hasil dari validasi ahli media pembelajaran sebesar 94,16% dengan kategori valid. Selanjutnya uji coba kelompok kecil memperoleh hasil 82% dengan kategori cukup valid. Hasil validasi berupa data kuantitatif dan kualitatif digunakan untuk merevisi modul sehingga modul semakin baik.

  15. ANALISIS PENGUNGKAPAN TANGGUNG JAWAB SOSIAL PERBANKAN SYARIAH DI INDONESIA BERDASARKAN ISLAMIC SOCIAL REPORTING INDEKS

    Directory of Open Access Journals (Sweden)

    Khusnul Fauziah

    2013-05-01

    Full Text Available Penelitian ini dilakukan untuk membandingkan pengungkapan tanggungjawab sosial bank syariah di Indonesia berdasarkan pada indeks Islamic Social Reporting (ISR. Obyek dari penelitian ini adalah tujuh bank syariah di Indonesia. Penelitian ini menggunakan laporan tahunan tahun 2011 yang dipublikasikan pada masing-masing bank. Analisis data menggunakan analisis isi. Hasil penelitian menunjukkan skore indek IRS tertinggi adalah Bank Muamalat Indonesia dengan skore 73% dan skore terendah adalah Bank Panin Syariah dengan skore 41%. This research is intended to compare the social responsibility disclosure of Islamic banking in Indonesia based on the Islamic Social Reporting (ISR index. The object of this research is taken from seven Islamic bankings in Indonesia. This research use the data from the annual report which was published in 2011 by the banks. The content analysis is implemented for analyzing the data. The results show that the highest score of social responsibility disclosure is Bank Muamalat Indonesia with the score of 73% and the lowest score is Panin Bank Syariah with the score of 41%.

  16. PENENTUAN WAKTU PERAWATAN UNTUK PENCEGAHANPADA KOMPONEN KRITIS CYCLONE FEED PUMP BERDASARKAN KRITERIA MINIMASI DOWN TIME

    Directory of Open Access Journals (Sweden)

    Siti Nandiroh

    2006-08-01

    Full Text Available Sistem perawatan mesin yang dilakukan di PT. Newmont Nusa Tenggara, selama ini masih bersifat korektif yaitu perawatan setelah terjadi kerusakan. Kerusakan komponen ini biasanya akan ditandai dengan ditemukannya produk yang dihasilkan tidak sedikit mengalami kecacatan. Peranan perawatan terhadap komponen-komponen Cyclone Feed Pump pada Process Departement - PT.Newmont Nusa Tenggara sangat penting artinya untuk mencegah terjadinya kecacatan produk masal dan mencegah terjadinya down time produksi. Dan perawatan yang paling baik digunakan adalah perawatan pencegahan sebelum terjadinya kerusakan (preventive maintenance. Mesin kritis adalah mesin yang mengalami frekwensi kerusakan terbesar dengan total downtime terbesar. Untuk penentuan mesin kritis ini, langkah pertama yang dilakukan adalah dengan mengukur lamanya waktu downtime produksi dari tiap-tiap mesin yang ada. Perhitungan MTTR berdasarkan data downtime, yang sebelumnya juga dilakukan uji kecocokan distribusi dan hasilnya sesuai, Dengan melakukan perhitungan Mean Time To Repair dan Mean Time To Failure dapat diketahui rata-rata waktu berapa lama pompa beroperasi dan berapa lama pompa tersebut dapat dilakukan perbaikan serta dapat diketahui Reliability pada Cyclone Feed Pump 2.0.1. Setelah dilakukkan perhitungan, komponen kritis Discharge Pipe pada Cyclone Feed Pump 2.0.1 harus sudah dilakukan inspeksi preventif, karena telah beroperasi 664.8 jam, dan perbaikan yang harus lakukan maksimal 3.4997 jam setiap kali dilakukan shutdown.

  17. OPTIMALISASI PEMETAAN FASE PERTUMBUHAN PADI BERDASARKAN ANALISA POLA REFLEKTAN DENGAN DATA HIPERSPEKTRAL STUDI KASUS : KABUPATEN KARAWANG

    Directory of Open Access Journals (Sweden)

    Rauf Syafriyyin

    2015-02-01

    Full Text Available Kebutuhan akan beras sebagai sumber makanan pokok yang dikonsumsi oleh lebih dari 90% masyarakat Indonesia menjadikan padi sebagai komoditas strategis yang berperan penting dalam ketahanan pangan nasional. Untuk memenuhi kebutuhan tersebut diperlukan teknologi yang tepat guna dalam memetakan fase pertumbuhan padi sebagai alat untuk memonitor dan mengevaluasi pertumbuhan padi. Teknologi hiperspektral yang memiliki ratusan kanal mampu menyajikan spektral yang kontinu pada setiap objek yang diamati sehingga melalui data hiperspektral perbedaan fase pertumbuhan dapat lebih mudah diamati melalui analisis pola dan karakteristik nilai reflektan spektral yang kemudian diklasifikasikan kedalam fase pertumbuhan padi. Pemetaan fase pertumbuhan padi dilakukan pada citra HyMap dengan metode klasifikasi Spectral Angle Mapper (SAM dan Support Vector Machine (SVM yang merupakan metode klasifikasi terbimbing (supervised yang digunakan untuk mengenali pola nilai spektral dari suatu objek berdasarkan informasi dari piksel citra. Dari hasil pemetaan fase pertumbuhan padi yang dibagi menjadi 9 kelas mewakili setiap stage tumbuh padi yaitu (Seedling, Tillering, Stem Elongation, Penicle Initation to booting, Heading, Flowering, Milk Grain, Dough Grain, dan Mature Grain diperoleh ketelitian  SAM sebesar 82,609 % dan SVM sebesar 54,348 %  . Hal ini menunjukkan pemetaan fase pertumbuhan padi dengan metode analisis pola reflektan spektral dengan metode SAM memiliki hasil yang lebih akurat dan signifikan daripada metode SVM.

  18. Kompetisi Surat Kabar Lokal Berdasarkan Tingkat Kepuasan Biro Iklan pada Layanan Jasa Media Surat Kabar

    Directory of Open Access Journals (Sweden)

    L. Juni Andi Prasetiya

    2013-11-01

    Full Text Available Abstract: Business newspaper has eliciting competition over source life of supporting media industry, i.e. capital, types of content and types of audience. This research explains the newspaper’s competition based on advertiser satisfaction as a benchmark of media effectiveness. Adopting the theory of uses & gratification and using variables of gratification sought and gratification obtained, these studies examine 5 local newspapers in Yogyakarta. The instrument of competitive strategy is using for further analysis, consisting of superiority direction and superiority magnitude measurements. The results showed that advertising agencies haven’t felt the satisfaction of the services provided by the local newspaper. Key words: competition, gratification sought, gratification obtained, superiority direction, superiority magnitude . Abstrak: Bisnis surat kabar telah memunculkan kompetisi yang memperebutkan sumber penunjang hidup industri media, yakni modal, isi media, dan jenis audiens. Penelitian ini menjelaskan kompetisi tersebut berdasarkan kepuasan pengiklan sebagai tolok ukur efektivitas media. Mengadopsi teori uses & gratification dengan menggunakan variabel gratification sought dan gratification obtained, penelitian ini menguji lima surat kabar lokal di Yogyakara. Selanjutnya dianalisis dengan menggunakan instrumen competitive superiority, terdiri dari superiority direction dan superiority magnitude. Hasil penelitian menunjukkan bahwa biro iklan belum merasakan kepuasan dari layanan yang diberikan oleh jasa surat kabar lokal.

  19. Intensi Perawat Melakukan Pencegahan Luka Tekan di Ruang Intensif berdasarkan Theory Planned of Behaviour

    Directory of Open Access Journals (Sweden)

    Ristina Mirwanti

    2017-09-01

    Full Text Available Luka tekan merupakan salah satu dampak hospitalisasi pada pasien kritis. Perawat memiliki peran yang penting dalam pencegahan luka tekan tetapi banyak perawat yang belum melakukan upaya pencegahan luka tekan secara maksimal sehingga perlu kajian untuk mengetahui faktor –-faktor yang memengaruhinya. Intensi merupakan antiseden terdekat dengan perilaku seseorang. Berdasarkan Theory of Planned Behavior (TPB, intensi seseorang untuk melakukan sesuatu dipengaruhi oleh sikap, norma subyektif, dan pengendalian perilaku. Penelitian ini bertujuan untuk mengetahui faktor yang memengaruhi intensi perawat melakukan pencegahan luka tekan. Penelitian kuantitatif ini menggunakan deskriptif analinitik observasional dengan pendekatan korelasional dilakukan secara cross sectional. Populasi pada penelitian ini adalah perawat yang melakukan asuhan keperawatan langsung pada pasien di ruang perawatan intensif. Teknik pengambilan sampel dengan menggunakan total sampling, yaitu 70 perawat di ruang perawatan intensif. Hasil penelitian ini menunjukkan adanya hubungan antara sikap dengan intensi (r = 0,632, p < 0,05, norma subyektif dengan intensi (r = 0,625, p < 0,05, dan pengendalian perilaku dengan intensi (r = 0,633, p < 0,05. Semakin favorable sikap perawat maka akan semakin tinggi intensi perawat melakukan pencegahan luka tekan. Semakin tinggi tekanan normatif dari sekitar perawat maka akan semakin tinggi pula intensi perawat, dan semakin tinggi pengendalian perilaku yang dirasakan perawat maka akan semakin tinggi pula intens perawat.

  20. PENGEMBANGAN MATERI PEMBELAJARAN BILANGAN BERDASARKAN PENDIDIKAN MATEMATIKA REALISTIK UNTUK SISWA KELAS V SEKOLAH DASAR

    Directory of Open Access Journals (Sweden)

    Farah Diba

    2013-09-01

    Full Text Available Penelitian ini bertujuan untuk menghasilkan materi pembelajaran matematika pada materi bilangan  yang berdasarkan PMR dalam bentuk buku siswa yang valid, praktis, dan mempunyai potensial efek untuk siswa kelas V  Sekolah Dasar.  Metode penelitian yang digunakan adalah metode penelitian pengembangan yang terdiri dari analisis, desain, evaluasi dan revisi. Pengumpulan data dilakukan dengan cara analisis dokumen, wawancara dan tes. Subjek pada penelitian ini adalah siswa kelas 5C SD Negeri 117 Palembang yang berjumlah 41 orang. Dari hasil penelitian menunjukkan bahwa siswa sangat antusias dan senang dalam belajar, siswa juga memberikan sikap positif terhadap pembelajaran matematika yang dilihat dari komentar mereka, serta tes kemampuan mereka yang menunjukkan hasil baik dengan rata-rata 79,79 dimana 34 orang siswa (82,93% memperoleh  nilai ³ 66. Oleh karena itu, prototipe ketiga buku siswa yang peneliti disain menghasilkan materi pembelajaran bilangan yang valid, praktis, dan mempunyai potensial efek untuk siswa kelas V SD Negeri 117 Palembang dan dapat digunakan sebagai salah satu alternatif dalam pembelajaran bilangan. Kata kunci : Pengembangan, Bilangan, Pendidikan Matematika Realistik

  1. Analisa Komposisi Fasa Lempung Kalimantan Selatan Berdasarkan Data Difraksi Sinar X

    Directory of Open Access Journals (Sweden)

    Muhammad Saukani

    2017-03-01

    Full Text Available Penelitian tentang karaktersisasi mineral lempung Kalimantan Selatan sebagai bahan dasar geopolymer telah dilakukan. Penelitian ini bertujuan untuk mengetahui komposisi kimia yang terkandung dalam masing-masing sampel dan menganalisa potensinya sebagai bahan geopolymer. Sampel diambil di Sungai Tabuk, Cintapuri dan Tatakan. Informasi kandungan fasa dalam sampel lempung tersebut dikarakterisasi menggunakan difraktometer sinar X yang dianalisa secara kualitatif dengan metode search-match dan kuantitatif dengan metode Rietveld.  Agar analisa difraksi sinar X lebih mudah, sampel juga dilakukan karakterisasi menggunakan XRF. Hasil karakterisasi XRF menginformasikan bahwa ketiga sampel lempung tersebut mengandung unsur Si, Al, Fe, K dan Ti. Seluruh puncak-puncak kristalin yang dianalisis dari data XRD secara kualitatif menggunakan perangkat lunak X’Pert HighScore Plus menunjukkan adanya fasa mayor Quartz (SiO2 dan Kaolinit (Al2Si2O5(OH4. Analisa secara kuantitatif menggunakan perangkat lunak Rietica menunjukkan kandungan Quartz dan kaolinit berturut-turut untuk sampel CT02 29,4%, 70,6%, ST02 30,7%, 69,3% dan TT02 5,4%, 94,6%. Berdasarkan data kuantitatif ini menunjukkan bahwa seluruh sampel berpotensi untuk dimanfaatkan sebagai bahan dasar geopolymer

  2. Protein phosphatase 5 is necessary for ATR-mediated DNA repair

    Energy Technology Data Exchange (ETDEWEB)

    Kang, Yoonsung [Department of Pharmacology, DNA Repair Research Center, Chosun University School of Medicine, 375 Seosuk-Dong, Gwangju 501-759 (Korea, Republic of); Cheong, Hyang-Min [Department of Life Science, College of Natural Science, Chung-Ang University, 221 Heuksuk-Dong, Dongjak-Ku, Seoul 156-756 (Korea, Republic of); Lee, Jung-Hee [Department of Pharmacology, DNA Repair Research Center, Chosun University School of Medicine, 375 Seosuk-Dong, Gwangju 501-759 (Korea, Republic of); Song, Peter I. [Department of Dermatology, University of Arkansas for Medical Science, 4301 West Markham, Slot 576, Little Rock, AR 72205 (Korea, Republic of); Lee, Kwang-Ho [Department of Life Science, College of Natural Science, Chung-Ang University, 221 Heuksuk-Dong, Dongjak-Ku, Seoul 156-756 (Korea, Republic of); Kim, Sang-Yong [Division of Endocrinology, Department of Internal Medicine, Chosun University School of Medicine, 375 Seosuk-Dong, Gwangju 501-759 (Korea, Republic of); Jun, Jae Yeoul [Department of Physiology, Chosun University School of Medicine, 375 Seosuk-Dong, Gwangju 501-759 (Korea, Republic of); You, Ho Jin, E-mail: hjyou@chosun.ac.kr [Department of Pharmacology, DNA Repair Research Center, Chosun University School of Medicine, 375 Seosuk-Dong, Gwangju 501-759 (Korea, Republic of)

    2011-01-07

    Research highlights: {yields} Serine/threonine protein phosphatase 5 (PP5) has been shown to participate in ataxia telangiectasia-mutated (ATM)- and ATR (ATM- and Rad3-related)-mediated checkpoint pathways, which plays an important role in the DNA damage response and maintenance of genomic stability. {yields} However, it is not clear exactly how PP5 participates in this process. {yields} Our results indicate that PP5 is more closely related with ATR-mediated pathway than ATM-mediated pathway in DNA damage repair. -- Abstract: Several recent studies have shown that protein phosphatase 5 (PP5) participates in cell cycle arrest after DNA damage, but its roles in DNA repair have not yet been fully characterized. We investigated the roles of PP5 in the repair of ultraviolet (UV)- and neocarzinostatin (NCS)-induced DNA damage. The results of comet assays revealed different repair patterns in UV- and NCS-exposed U2OS-PS cells. PP5 is only essential for Rad3-related (ATR)-mediated DNA repair. Furthermore, the phosphorylation of 53BP1 and BRCA1, important mediators of DNA damage repair, and substrates of ATR and ATM decreased in U2OS-PS cells exposed to UV radiation. In contrast, the cell cycle arrest proteins p53, CHK1, and CHK2 were normally phosphorylated in U2OS and U2OS-PS cells exposed to UV radiation or treated with NCS. In view of these results, we suggest that PP5 plays a crucial role in ATR-mediated repair of UV-induced DNA damage.

  3. Knockdown of REV3 synergizes with ATR inhibition to promote apoptosis induced by cisplatin in lung cancer cells.

    Science.gov (United States)

    Jiang, He-Guo; Chen, Ping; Su, Jin-Yu; Wu, Ming; Qian, Hai; Wang, Yi; Li, Jian

    2017-12-01

    It has been demonstrated that REV3, the catalytic subunit of the translesion synthesis (TLS) polymerase ζ, play an important role in DNA damage response (DDR) induced by cisplatin, and Ataxia-telangietasia mutated and Rad-3-related (ATR) knase is a central player in activating cell cycle checkpoint, stabilizing replication forks, regulating DDR, and promoting repair of DNA damage caused by cisplatin. Cancer cells deficient in either one of REV3 and ATR are more sensitive to cisplatin. However, whether co-inhibition of REV3 and ATR can further increase sensitivity of non-small cell lung cancer (NSCLC) cells to cisplatin is not clear. In this study, we show that REV3 knockdown combined with ATR inhibition further enhance cytotoxicity of cisplatin in NSCLC cells, including cisplatin-sensitive and -resistant cell lines, compared to individual knockdown of REV3 or ATR, which are accompanied by markedly caspase-dependent apoptosis response, pronounced DNA damage accumulation and severe impediment of interstrand crosslink (ICL), and double strand break (DSB) repair. Our results suggest that REV3 knockdown synergize strongly with ATR inhibition to significantly increase sensitivity of cisplatin in NSCLC cells by inhibiting ICL and DSB repair. Thus simultaneously targeting REV3 and ATR may represent one approach to overcome cisplatin resistance and improve chemotherapeutic efficacy in NSCLC treatment. © 2017 Wiley Periodicals, Inc.

  4. Advanced Test Reactor National Scientific User Facility (ATR NSUF) Monthly Report November 2014

    Energy Technology Data Exchange (ETDEWEB)

    Soelberg, Renae [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2014-11-01

    Advanced Test Reactor National Scientific User Facility (ATR NSUF) Monthly Report November 2014 Highlights Rory Kennedy and Sarah Robertson attended the American Nuclear Society Winter Meeting and Nuclear Technology Expo in Anaheim, California, Nov. 10-13. ATR NSUF exhibited at the technology expo where hundreds of meeting participants had an opportunity to learn more about ATR NSUF. Dr. Kennedy briefed the Nuclear Engineering Department Heads Organization (NEDHO) on the workings of the ATR NSUF. • Rory Kennedy, James Cole and Dan Ogden participated in a reactor instrumentation discussion with Jean-Francois Villard and Christopher Destouches of CEA and several members of the INL staff. • ATR NSUF received approval from the NE-20 office to start planning the annual Users Meeting. The meeting will be held at INL, June 22-25. • Mike Worley, director of the Office of Innovative Nuclear Research (NE-42), visited INL Nov. 4-5. Milestones Completed • Recommendations for the Summer Rapid Turnaround Experiment awards were submitted to DOE-HQ Nov. 12 (Level 2 milestone due Nov. 30). Major Accomplishments/Activities • The University of California, Santa Barbara 2 experiment was unloaded from the GE-2000 at HFEF. The experiment specimen packs will be removed and shipped to ORNL for PIE. • The Terrani experiment, one of three FY 2014 new awards, was completed utilizing the Advanced Photon Source MRCAT beamline. The experiment investigated the chemical state of Ag and Pd in SiC shell of irradiated TRISO particles via X-ray Absorption Fine Structure (XAFS) spectroscopy. Upcoming Meetings/Events • The ATR NSUF program review meeting will be held Dec. 9-10 at L’Enfant Plaza. In addition to NSUF staff and users, NE-4, NE-5 and NE-7 representatives will attend the meeting. Awarded Research Projects Boise State University Rapid Turnaround Experiments (14-485 and 14-486) Nanoindentation and TEM work on the T91, HT9, HCM12A and 9Cr ODS specimens has been completed at

  5. KECEMASAN MATEMATIK SISWA KELAS XI SMK BERDASARKAN MAHMOOD DAN KHATOON DALAM SETTING PROBLEM BASED LEARNING

    Directory of Open Access Journals (Sweden)

    Desy Kumalasari

    2017-03-01

    Full Text Available Penelitian ini bertujuan untuk mendeskripsikan kualitas pembelajaran matematika dalam setting problem based learning terhadap kemampuan pemecahan masalah siswa kelas XI SMK, mendeskripsikan tingkat kecemasan matematik siswa dalam mengikuti pelajaran matematika dalam setting problem based learning, dan mendeskripsikan kemampuan pemecahan masalah berdasarkan tingkat kecemasan matematik. Metode penelitian ini adalah mixed methods. Subjek dalam penelitian ini adalah siswa kelas XI TKKB SMKN 10 Semarang. Selanjutnya dipilih 6 siswa dari masing-masing kemampuan pemecahan masalah berdasarkan tingkat kecemasan matematik. Metode pengumpulan data dalam penelitian ini adalah metode observasi, dokumentasi, tes, dan wawancara. Analisis data dalam penelitian ini adalah analisis kualitas pembelajaran, analisis tingkat kecemasan matematik, analisis kemampuan pemecahan masalah, reduksi data, penyajian data, dan menarik kesimpulan dan verifikasi. Hasil penelitian ini diperoleh: kualitas pembelajaran dalam setting problem based learning dalam kategori baik, tingkat kecemasan matematik siswa kelas XI SMKN 10 Semarang sebelum pembelajaran matematika adalah rendah, pada saat kegiatan pembelajaran adalah tinggi, dan setelah kegiatan pembelajaran adalah rendah, untuk tingkat kecemasan sebelum tes kemampuan pemecahan masalah adalah rendah, dan setelah tes kemampuan pemecahan masalah adalah tinggi, dan kemampuan pemecahan masalah matematika siswa yang tingkat kecemasan matematik rendah lebih baik dari pada siswa yang tingkat kecemasan matematiknya tinggi.   This research aimed to describe the quality of  mathematics teaching in the setting of problem based learning to problem­solving ability of class XI student of SMK, the level of mathematics  anxiety  of   students  in  participating  in  the  setting  math  problem  based learning, and the problem­solving abilities by mathematics anxiety levels. This research method is mixed methods. Subjects in this

  6. Diversitas Genetik Anopheles balabacensis, Baisas di Berbagai Daerah Indonesia Berdasarkan Sekuen Gen ITS 2 DNA Ribosom

    Directory of Open Access Journals (Sweden)

    Widiarti Widiarti

    2016-05-01

    dilaporkan sebagai spesies kompleks di berbagai negara, akan tetapi belum banyak dilaporkan di Indonesia. Penanggulangan malaria agar lebih efektif perlu adanya perbaikan dan pendekatan strategi dalam pengendalian vektor, termasuk sangat diperlukan adanya pemahaman terhadap spesies dan bioekologinya. Tujuan penelitian adalah untuk : a. Mengidentifikasi secara molekuler nyamuk An. balabacensis yang dicurigai sebagai spesies kompleks berdasarkan sekuen ITS2 DNA ribosom, b. Mengetahui diversitas genetik nyamuk An. balabacensis dari daerah endemis dan non endemis dengan jarak geografis yang berbeda, c. Mengetahui kekerabatan genetik (jarak taksonomi nyamuk An. balabacensis dari berbagai daerah di Indonesia dengan merekonstruksi pohon filogenetik. Hasil penelitian menunjukkan bahwa An. balabacensis di Indonesia merupakan spesies kompleks simpatrik dan allopatrik. Ada perbedaan kekerabatan genetikyang cukup jauh diantara populasi An. balabacensis di Pusuk Lestari, wilayah Puskesmas Meninting, Lombok Barat, NTB yang merupakan simpatrik kompleks. Berdasarkan hubungankekerabatan An. leucosphyrus group, An. balabacensis dari Berjoko, Kabupaten Nunukan menunjukkan kecenderungan terpisah cukup jauh dibandingkan dengan An. balabacensiskompleks lainnya yang berasal dari Jawa Tengah dan Lombok, NTB.Kata kunci : An. balabacensis, variasi genetik, ITS2 DNA ribosom

  7. ANALISIS POSISI PERSAINGAN OPERATOR TELEPON SELULER BERDASARKAN PERSEPSI KONSUMEN DI KOTA MALANG

    Directory of Open Access Journals (Sweden)

    Dodik - Yunarwanto

    2012-05-01

    Full Text Available ABSTRAK   Penelitian dilakukan untuk mengetahui posisi persaingan operator telepon seluler prabayar merek Merek I, Merek II, Merek III, Merek IV serta Merek V berdasarkan persepsi konsumen dan pengaruh posisi persaingannya terhadap jumlah pelanggan di kota Malang. Metode analisa Multi Dimensional Scaling (MDS digunakan untuk menganalisis data penelitian. Hasil penelitian menunjukkan adanya perbedaan posisi masing-masing operator telepon seluler prabayar  berdasarkan persepsi konsumen. Dengan alat analisis Cluster hasil penelitian yang diperoleh terbentuk tiga kelompok atau segmen yaitu kelompok pertama ditempati Merek I, Merek II dan Merek III; kelompok ke dua ditempati Merek V;  dan kelompok ke tiga Merek IV tujuan pengelompokan ini mengetahui jarak terdekat persaingan antar operator ponsel prabayar. Merek II merupakan pesaing dekat Merek I dan Merek III sedangkan Merek V merupakan pesaing terdekat Merek IV. Selanjutnya dengan alat analisa Atribut Vektor dapat diketahui keunggulan atribut masing-masing operator ponsel prabayar Merek I disukai konsumen karena atribut produk dan personal traits, Merek II disukai konsumen karena atribut distribusi, Merek III disukai konsumen karena atribut proses, Merek V disukai konsumen karena atribut promosi sedangkan Merek IV disukai konsumen karena atribut harga. Setelah diketahui keunggulan atribut masing-masing operator dengan menggunakan alat analisa Regresi dapat diketahui pengaruh posisi persaingan terhadap jumlah pelanggan secara keseluruhan dari enam atribut, hanya atribut promosi yang paling signifikan berpengaruh terhadap keputusan berlangganan. Hasil tiap kelompok atau segmennya. Segmen pertama atribut promosi yang paling signifikan berpengaruh terhadap keputusan berlangganan. Segmen kedua atribut harga dan personal traits yang paling signifikan berpengaruh terhadap jumlah pelanggan. Segmen ketiga, atribut harga yang paling signifikan berpengaruh terhadap keputusan berlangganan.   Kata kunci :

  8. Analisis Keandalan Struktur Padeye Berdasarkan Konfigurasi Rigging pada Lifting Upper Deck Modul Modec dengan Pendekatan Dinamik

    Directory of Open Access Journals (Sweden)

    Iqbal Gayuh Raharjaning Mukti Sumarsono

    2017-01-01

    Full Text Available Di dalam perusahaan yang bergerak dalam bidang fabrikasi, lifting merupakan salah satu tahapan terpenting dalam membangun bangunan lepas pantai sehingga diperlukan perhitungan dan analisis tambahan untuk memperhatikan apakah struktur tersebut aman ataupun tidak. Sekenario lifting berdasarkan konfigurasi rigging dapat dibuat untuk menentukan rigging equipment yang tepat. Pada kasus ini, struktur yang di-lifting adalah struktur upper deck dari modul MODEC yang dikerjakan oleh PT. GPS Batam. Deck ini memiliki panjang sekitar 19,5 m dan lebar 9 m. Berat total struktur dengan equipment sebesar 55 ton. Konfigurasi rigging yang akan digunakan ada tiga, yaitu Model A (tanpa spreader bar, Model B (satu spreader bar, dan Model C (dua spreader bar. Dari ketiga konfigurasi tersebut akan diperoleh dimensi padeye yang berbeda- beda. Model A, Model B, dan Model C memiliki diameter hole padeye masing-masing sebesar 74 mm, 65 mm, dan 52 mm. Tegangan dan UC tertinggi sama- sama terjadi pada Model A sebesar 17625,99 psi dan untuk UC sebesar 0,52. Tetapi hal ini berbanding terbalik apabila ditinjau dari daerah lubang. Tegangan ataupun UC yang lebih tinggi jatuh pada Model C yang menggunakan dua spreader bar sebesar 13936,58 psi dan nilai UC sebesar 0,45. Tegangan yang terjadi di attachments maupun sekitar hole dijadikan variabel dalam mencari keandalan yang terjadi pada tiap padeye dengan metode Mean value first order second moment (MVFOSM. Sehingga didapatkan Probality of Failure (PoF pada attachments padeye pada Model A, B, dan C masing- masing sebesar 0,126%, 0,064 %, dan 0,0001 %. Sedangkan PoF pada hole padeye sebesar 0,062% untuk Model A, 0,10 % untuk Model B, dan 0,23% untuk Model C.

  9. Analisis Implementasi Sistem Tanggap Darurat Berdasarkan Asosiasi Perlindungan Kebakaran Nasional 1600

    Directory of Open Access Journals (Sweden)

    Meilissa Ayu Pratiwi

    2013-05-01

    Full Text Available Penelitian kesesuaian pelaksanaan sistem tanggap darurat di PT X menjadi upaya untuk mempersiapkan proses tanggap darurat. Penelitian kualitatif dengan desain studi deskriptif analitik ini menggunakan dua jenis data meliputi data primer yang didapatkan melalui wawancara dan observasi, serta data sekunder melalui telaah dokumen. Tujuan penelitian ini adalah mengetahui kesesuaian implementasi sistem tanggap darurat di PT X Perusahaan Pelayanan Gas dan Minyak, ditinjau dari National Fire Protection Association 1600 (NFPA 1600 tahun 2012. Pada penelitian ini didapatkan kesesuaian implementasi sistem tanggap darurat PT X berdasarkan NFPA 1600 adalah 36,23%, sedangkan ketidaksesuainya adalah 37,60%. Diharapkan dapat mempertimbangkan saran yang diberikan untuk meningkatkan pemenuhan semua elemen persyaratan NFPA 1600 dalam mengimplementasikan sistem tanggap darurat di perusahaannya. The focus of this study was looking for an overview of compliance conformity for implementation emergency response system at PT X to prepared emergency response in the event of an emergency/disaster. This research is a qualitative descriptive study design that uses two types of data, primary data obtained through interviews and observations, and secondary data through document review. The purpose of this study to determine conformity of the implementation emergency response system in Oil and Gas Services Company PT X as per National Fire Protection Association 1600 (NFPA 1600 in 2012. This study resulted was the conformity of the emergency response system implementation based on NFPA 1600 in PT X was 36,23%, while unconformity proportion was 37,6%. PT X are expected to consider the advice had given based on results of this study to improve compliance to all elements requirements of NFPA 1600 in the company’s emergency response system.

  10. METODE DATA MINING UNTUK KLASIFIKASI DATA SEL NUKLEUS DAN SEL RADANG BERDASARKAN ANALISA TEKSTUR

    Directory of Open Access Journals (Sweden)

    Toni Arifin

    2016-03-01

    Full Text Available ABSTRACT - The Pap Smear test is done to see the presence of infection or changes in cells that can turn into cancer cells. In this research is using data on analysis results of texture image processing on previous research that is using a nucleus cell and inflammation cell in the image Pap Smear cell. The purpose of this research is to find the best method for classifying the nucleus cell and inflammation cell based on texture analysis GLCM (Gray Level Co-occurrence Matrix in this research used of method Decision tree (C 4.5, Naive Bayes and k-Nearest Neighbour. The results of this research brings about the best methods for classification of the data nucleus cell and inflammation cell that is a method of Decision tree (C4.5 with accuracy 97,56% whereas results for Naive Bayes 90,89% and k-Nearest Neighbour 95,97%. Keywords: Data mining, classification, Pap Smear cell, Texture Analysis ABSTRAKSI - Tes Pap Smear dilakukan untuk melihat adanya infeksi atau perubahan sel-sel yang dapat berubah menjadi sel kanker. Pada penelitian ini menggunakan data analisis tekstur yang didapatkan dari hasil pengolahan citra pada penelitian sebelumnya yaitu menggunakan sel nukleus dan sel radang pada citra sel Pap Smear. Tujuan dari penelitian ini adalah mencari metode terbaik untuk mengklasifikasikan sel nukleus dan sel radang berdasarkan analisa teksur GLCM (Gray Level Co-occurrence Matrix Metode yang digunakan dalam penelitian ini adalah metode Decision tree (C4.5, Naive Bayes dan k-Nearest Neighbour. Hasil dari penelitian ini didapatkan metode terbaik untuk klasifikasi data sel nukleus dan sel radang yaitu metode Decision tree (C4.5 dengan akurasi 97,56% sedangkan hasil untuk Naive Bayes 90,89% dan k-Nearest Neighbour 95,97%. Kata Kunci: Data mining, Klasifikasi, Sel Pap Smear, Analisa Tekstur

  11. KERAGAAN WARNA IKAN CLOWN BIAK (Amphiprion percula POPULASI ALAM DAN BUDIDAYA BERDASARKAN ANALISIS GAMBAR DIGITAL

    Directory of Open Access Journals (Sweden)

    Ruby Vidia Kusumah

    2015-09-01

    Full Text Available Penelitian ini bertujuan untuk mengkaji keragaan warna ikan clown Biak (Amphiprion percula populasi alam dan budidaya berdasarkan analisis gambar digital sebagai dasar upaya pemuliaannya. Gambar digital diambil dari koleksi ikan clown Biak Balai Besar Perikanan Budidaya Laut Lampung, Balai Besar Penelitian dan Pengembangan Budidaya Laut Gondol, Bali; serta pengumpul ikan hias di Denpasar, Bali menggunakan kamera digital Canon EOS 600D. Pola warna dikarakterisasi secara visual terhadap variasi strip hitam dan putih pada dasar badan oranye, jenis warna dianalisis menggunakan ImageJ 1.49s, persentase penutupan warna dilakukan dengan Adobe Photoshop CS5. Pola warna dikarakterisasi oleh strip hitam tebal, tipis, gelap, pudar, terputus, bergabung, serta strip putih normal, pelana, spot, melebar, dan terputus. Warna hitam alam dikarakterisasi oleh hue (H: 300-60º, saturation (S: 8%-56%, brightness (B: 3%-19%, sedangkan budidaya H: 300-23º, S: 9%-71%, B: 4%-20%. Warna oranye alam H: 19-33º, S: 88%-98%, B: 47%-85%, dan budidaya H: 14-29º, S: 86%-99%, B: 38%-82%. Warna putih alam H: 36-270º; S: 1%-13%, B: 66%-88%, dan budidaya H: 0-229º, S: 0%-14%, B: 55%-87%. Persentase penutupan warna badan didominasi warna oranye dengan rata-rata 45% untuk populasi alam dan 57% untuk populasi budidaya. Keragaan warna ikan clown Biak dapat diarahkan pada pembentukan strain misbar, picasso, spot (domino, dan onyx. Metode analisis gambar digital sangat potensial digunakan untuk analisis keragaan warna ikan hias.

  12. STUDI POTENSI ENERGI GEOTHERMAL BLAWAN- IJEN, JAWA TIMUR BERDASARKAN METODE GRAVITY

    Directory of Open Access Journals (Sweden)

    Raehanayati Raehanayati

    2013-11-01

    Full Text Available Penelitian ini merupakan studi awal untuk menentukan daerah yang memiliki potensi   panasbumi   berdasarkan   pengukuran   gayaberat   di   Blawan-Ijen,   Jawa   Timur. Pengukuran data primer dilakukan dengan menggunakan Gravitimeter LaCoste & Romberg tipe G-1053. Data anomali Bouger dari hasil perhitungan koreksi-koreksi metode gayaberat kemudian dibawa ke bidang datar selanjutnya dilakukan pemisahan anomali regional dan anomali sisa dengan menggunakan metode kontinuasi ke  atas. Hasil interpretasi terhadap anomali sisa yang dilakukan pada tiga penampang adalah penampang A-A’ nilai densitasnya yaitu: ρ1=2.58 gr/cm3, ρ2=2.80 gr/cm3 , ρ3=2.67 gr/cm3, dan ρ4=2.69 gr/cm3, sedangkan untuk penampang B-B’ nilai densitasnya adalah ρ1=2.58 gr/cm3, ρ2=2.82 gr/cm3, ρ3=2.67 gr/cm3, dan untuk penampang C-C’  nilai  densitasnya yaitu  ρ1=2.585 gr/cm3,  ρ2=2.82 gr/cm3,  ρ3=2.67 gr/cm3 dan ρ4=2.684 gr/cm3. Dari hasil pemodelan 2D dan 3D dapat terlihat bahwa pada daerah yang memiliki manifestasi air panas didominasi oleh batuan ρ1 karena memiliki nilai densitas paling rendah yang berada pada daerah Blawan. Sehingga dapat disimpulkan bahwa reservoir panasbumi  daerah  Blawan-Ijen  didominasi  oleh  batuan  yang  memiliki  porositas  tinggi (densitas rendah dan tingkat permeabilitasnya tinggi dengan jumlah volume sebesar 101.20 juta m3.

  13. Analisis Didaktis Berdasarkan Kemampuan Kognitif dan Keterampilan Berpikir Kritis Siswa pada Materi Kalor

    Directory of Open Access Journals (Sweden)

    Susana Susana

    2015-12-01

    Full Text Available Abstract Cognitive abilities and critical thinking skill are the essential things to develop in learning process. The purpose of this research is to analyze didactically students’ cognitive abilities and critical thinking on heat concept in order to design an appropriate learning. Research method was descriptive analysis. Research subject was 25 senior high school students in Bandung. Data was documented by using 10 essay items of cognitive abilities test and 5 essay items of critical thinking skill. Data was analyzed based on the interpretation of the test score. The findings showed that students’ cognitive abilities on each cognitive process indicators respectively 48% understand (C2, 41% apply (C3, 36% analyze (C4 and 38% evaluate (C5. The findings of students’ critical thinking, respectively the ability to identify main idea of problem (58%, to interprets data accurately (36% and to formulate a rational decision (28%. Keywords: didactic analysis, cognitive abilities, critical thinking, heat concept. Abstrak Kemampuan kognitif dan keterampilan berpikir kritis merupakan hal esensial yang penting untuk dikembangkan dalam proses pembelajaran. Penelitian ini bertujuan untuk melakukan analisis didaktis terhadap kemampuan kognitif dan keterampilan berpikir kritis siswa pada materi kalor dalam rangka untuk merancang pembelajaran yang tepat. Metode yang digunakan adalah deskriptif analitik. Subjek penelitian sebanyak 25 siswa kelas XII pada salah satu sekolah menengah atas di Kota Bandung. Instrumen penelitian berupa tes kemampuan kognitif sebanyak 10 soal dan keterampilan berpikir kritis sebanyak 5 soal berbentuk uraian. Data dianalisis berdasarkan tafsiran persentase hasil tes. Hasil penelitian menunjukkan bahwa kemampuan kognitif siswa pada tiap indikator proses kognitif berturut-turut sebesar 48% memahami (C2, 41% mengaplikasikan (C3, 36% menganalisis (C4 dan 38% mengevaluasi (C5. Keterampilan berpikir kritis siswa meliputi: kemampuan

  14. Meteorological Conditions Associated with the ATR72 Aircraft Accident near Roselawn, Indiana, on 31 October 1994.

    Science.gov (United States)

    Marwitz, J.; Politovich, M.; Bernstein, B.; Ralph, F.; Neiman, P.; Ashenden, R.; Bresch, J.

    1997-01-01

    An ATR72 commuter aircraft crashed near Roselawn, Indiana, on 31 October 1994 killing all 68 people on board. Available weather data, including those from a Next Generation Radar, a radar wind profiler, a Geostationary Operational Environmental Satellite, and pilot reports of icing have been examined in combination with analysis fields from the Rapid Update Cycle model and forecast fields from the Pennsylvania State University/National Center for Atmospheric Research MM5 numerical model. Synthesis of this information provides a relatively complete and consistent picture of the ambient meteorological conditions in the region of the ATR72 holding pattern at 3.1 km above mean sea level. Of particular interest is the evidence that these conditions favored the development of supercooled drizzle drops within a strong frontal zone, as indicated by cloud-top temperatures of 10° to 15°C, weak radar reflectivity, and strong, vertical wind shear within the cloud and warm front.

  15. Proteomics Reveals Global Regulation of Protein SUMOylation by ATM and ATR Kinases during Replication Stress

    Directory of Open Access Journals (Sweden)

    Stephanie Munk

    2017-10-01

    Full Text Available The mechanisms that protect eukaryotic DNA during the cumbersome task of replication depend on the precise coordination of several post-translational modification (PTM-based signaling networks. Phosphorylation is a well-known regulator of the replication stress response, and recently an essential role for SUMOs (small ubiquitin-like modifiers has also been established. Here, we investigate the global interplay between phosphorylation and SUMOylation in response to replication stress. Using SUMO and phosphoproteomic technologies, we identify thousands of regulated modification sites. We find co-regulation of central DNA damage and replication stress responders, of which the ATR-activating factor TOPBP1 is the most highly regulated. Using pharmacological inhibition of the DNA damage response kinases ATR and ATM, we find that these factors regulate global protein SUMOylation in the protein networks that protect DNA upon replication stress and fork breakage, pointing to integration between phosphorylation and SUMOylation in the cellular systems that protect DNA integrity.

  16. ATR Activates the S-M Checkpoint during Unperturbed Growth to Ensure Sufficient Replication Prior to Mitotic Onset

    Directory of Open Access Journals (Sweden)

    John Kenneth Eykelenboom

    2013-11-01

    Full Text Available Cells must accurately replicate and segregate their DNA once per cell cycle in order to successfully transmit genetic information. During S phase in the presence of agents that cause replication stress, ATR-dependent checkpoints regulate origin firing and the replication machinery as well as prevent untimely mitosis. Here, we investigate the role of ATR during unperturbed growth in vertebrate cells. In the absence of ATR, individual replication forks progress more slowly, and an increased number of replication origins are activated. These cells also enter mitosis early and divide more rapidly, culminating in chromosome bridges and laggards at anaphase, failed cytokinesis, and cell death. Interestingly, cell death can be rescued by prolonging mitosis with partial inhibition of the mitotic cyclin-dependent kinase 1. Our data indicate that one of the essential roles of ATR during normal growth is to minimize the level of unreplicated DNA before the onset of mitosis.

  17. Analysis of European honeybee (Apis mellifera) wings using ATR-FTIR and Raman spectroscopy: A pilot study

    Czech Academy of Sciences Publication Activity Database

    Machovič, Vladimír; Lapčák, L.; Havelcová, Martina; Borecká, Lenka; Novotná, M.; Novotná, M.; Javůrková, I.; Langrová, I.; Hájková, Š.; Brožová, A.; Titěra, D.

    2017-01-01

    Roč. 48, č. 1 (2017), s. 22-29 ISSN 1211-3174 Institutional support: RVO:67985891 Keywords : honeybee wings * ATR-FTIR * Raman spectroscopy * protein * lipid * chitin Subject RIV: CB - Analytical Chemistry, Separation OBOR OECD: Analytical chemistry

  18. Determination of methyl ester contents in biodiesel blends by FTIR-ATR and FTNIR spectroscopies.

    Science.gov (United States)

    Oliveira, Jefferson S; Montalvão, Rafael; Daher, Leila; Suarez, Paulo A Z; Rubim, Joel C

    2006-07-15

    Partial last square regression (PLS) and artificial neural network (ANN) combined to FTIR-ATR and FTNIR spectroscopies have been used to design calibration models for the determination of methyl ester content (%, w/w) in biodiesel blends (methyl ester+diesel). Methyl esters were obtained by the methanolysis of soybean, babassu, dende, and soybean fried oils. Two sets of samples have been used: Group I, binary mixtures (diesel+one kind of methyl ester), corresponding to 96 biodiesel blends (0-100%, w/w), and Group II, quaternary mixtures (diesel+three types of methyl esters), corresponding to 60 biodiesel blends (0-100%, w/w). The PLS results have shown that the FTNIR model for Group I is more precise and accurate (+/-0.02 and +/-0.06%, w/w). In the case of Group II the PLS models (FTIR-ATR and FTNIR) have shown the same accuracies, while the ANN/FTNIR models has presented better performance than the ANN/FTIR-ATR models. The best accuracy was achieved by the ANN/FTNIR model for diesel determination (0.14%, w/w) while the worthiest was that of dende ANN/FTIR-ATR model (0.6%, w/w). Precisions in Group II analysis ranged from 0.06 to 0.53% (w/w) and coefficients of variation were better than 3% indicating that these models are suitable for the determination of diesel-biodiesel blends composed of methyl esters derived from different vegetable oils.

  19. Proteomics Reveals Global Regulation of Protein SUMOylation by ATM and ATR Kinases during Replication Stress

    DEFF Research Database (Denmark)

    Munk, Stephanie; Sigurðsson, Jón Otti; Xiao, Zhenyu

    2017-01-01

    The mechanisms that protect eukaryotic DNA during the cumbersome task of replication depend on the precise coordination of several post-translational modification (PTM)-based signaling networks. Phosphorylation is a well-known regulator of the replication stress response, and recently an essentia....... They analyze changes in the SUMO and phosphoproteome after MMC and hydroxyurea treatments and find that the DNA damage response kinases ATR and ATM globally regulate SUMOylation upon replication stress and fork breakage....

  20. Diamond-coated ATR prism for infrared absorption spectroscopy of surface-modified diamond nanoparticles

    Czech Academy of Sciences Publication Activity Database

    Remeš, Zdeněk; Kozak, Halyna; Rezek, Bohuslav; Ukraintsev, Egor; Babchenko, Oleg; Kromka, Alexander; Girard, H.A.; Arnault, J.-C.; Bergonzo, P.

    2013-01-01

    Roč. 270, APR (2013), s. 411-417 ISSN 0169-4332 R&D Projects: GA ČR GAP108/12/0910; GA ČR GPP205/12/P331; GA MŠk LH12236; GA MŠk LH12186 Institutional support: RVO:68378271 Keywords : ATR FTIR * CVD * hydrogenation * microwave * nanocrystalline diamond * nanopowder Subject RIV: BM - Solid Matter Physics ; Magnetism Impact factor: 2.538, year: 2013

  1. Atrésie choanale : A propos de 29 cas | Zainine | Journal Tunisien d ...

    African Journals Online (AJOL)

    Introduction : L'atrésie choanale est une malformation congénitale rare, dont la fréquence est estimée à 1 cas pour 5000 à 8000 naissances. plusieurs hypothèses embryologiques ont été proposées pour expliquer son origine. Le diagnostic de cette malformation est avant tout clinique. Objectifs : analyser les ...

  2. ATR-FTIR spectroscopy and chemometrics: An interesting tool to discriminate and characterize counterfeit medicines.

    Science.gov (United States)

    Custers, D; Cauwenbergh, T; Bothy, J L; Courselle, P; De Beer, J O; Apers, S; Deconinck, E

    2015-08-10

    Counterfeit medicines pose a huge threat to public health worldwide. High amounts of counterfeit pharmaceuticals enter the European market and therefore detection of these products is essential. Attenuated Total Reflection Fourier-Transform infrared spectroscopy (ATR-FTIR) might be useful for the screening of counterfeit medicines since it is easy to use and little sample preparation is required. Furthermore, this approach might be helpful to customs to obtain a first evaluation of suspected samples. This study proposes a combination of ATR-FTIR and chemometrics to discriminate and classify counterfeit medicines. A sample set, containing 209 samples in total, was analyzed using ATR-FTIR and the obtained spectra were used as fingerprints in the chemometric data-analysis which included Principal Component Analysis (PCA), k-Nearest Neighbours (k-NN), Classification and Regression Trees (CART) and Soft Independent Modelling of Class Analogy (SIMCA). First it was verified whether the mentioned techniques are capable to distinguish samples containing different active pharmaceutical ingredients (APIs). PCA showed a clear tendency of discrimination based on the API present; k-NN, CART and SIMCA were capable to create suitable prediction models based on the presence of different APIs. However k-NN performs the least while SIMCA performs the best. Secondly, it was tested whether these three models could be expanded to discriminate between genuine and counterfeit samples as well. k-NN was not able to make the desired discrimination and therefore it was not useful. CART performed better but also this model was less suited. SIMCA, on the other hand, resulted in a model with a 100% correct discrimination between genuine and counterfeit drugs. This study shows that chemometric analysis of ATR-FTIR fingerprints is a valuable tool to discriminate genuine from counterfeit samples and to classify counterfeit medicines. Copyright © 2014 Elsevier B.V. All rights reserved.

  3. Assessing and calibrating the ATR-FTIR approach as a carbonate rock characterization tool

    Science.gov (United States)

    Henry, Delano G.; Watson, Jonathan S.; John, Cédric M.

    2017-01-01

    ATR-FTIR (attenuated total reflectance Fourier transform infrared) spectroscopy can be used as a rapid and economical tool for qualitative identification of carbonates, calcium sulphates, oxides and silicates, as well as quantitatively estimating the concentration of minerals. Over 200 powdered samples with known concentrations of two, three, four and five phase mixtures were made, then a suite of calibration curves were derived that can be used to quantify the minerals. The calibration curves in this study have an R2 that range from 0.93-0.99, a RMSE (root mean square error) of 1-5 wt.% and a maximum error of 3-10 wt.%. The calibration curves were used on 35 geological samples that have previously been studied using XRD (X-ray diffraction). The identification of the minerals using ATR-FTIR is comparable with XRD and the quantitative results have a RMSD (root mean square deviation) of 14% and 12% for calcite and dolomite respectively when compared to XRD results. ATR-FTIR is a rapid technique (identification and quantification takes < 5 min) that involves virtually no cost if the machine is available. It is a common tool in most analytical laboratories, but it also has the potential to be deployed on a rig for real-time data acquisition of the mineralogy of cores and rock chips at the surface as there is no need for special sample preparation, rapid data collection and easy analysis.

  4. Cancer cells with alternative lengthening of telomeres do not display a general hypersensitivity to ATR inhibition

    Directory of Open Access Journals (Sweden)

    Katharina I Deeg

    2016-08-01

    Full Text Available Telomere maintenance is a hallmark of cancer as it provides cancer cells with cellular immortality. A significant fraction of tumors uses the alternative lengthening of telomeres (ALT pathway to elongate their telomeres and to gain an unlimited proliferation potential. Since the ALT pathway is unique to cancer cells, it represents a potentially valuable, currently unexploited target for anticancer therapies. Recently, it was proposed that ALT renders cells hypersensitive to ataxia telangiectasia- and RAD3-related (ATR protein inhibitors (Flynn et al., Science 347, 273. Here, we measured the response of various ALT or telomerase positive cell lines to the ATR inhibitor VE-821. In addition, we compared the effect of the inhibitor on cell viability in isogenic cell lines, in which ALT was active or suppressed. In these experiments a general ATR inhibitor sensitivity of cells with ALT could not be confirmed. We rather propose that the observed variations in sensitivity reflect differences between cell lines that are unrelated to ALT.

  5. FTIR-ATR spectroscopy applied to quality control of grape-derived spirits.

    Science.gov (United States)

    Anjos, Ofélia; Santos, António J A; Estevinho, Letícia M; Caldeira, Ilda

    2016-08-15

    The Fourier transform infrared (FTIR) spectroscopic method with attenuated total reflectance (ATR) was used for predicting the alcoholic strength, the methanol, acetaldehyde and fusel alcohols content of grape-derived spirits. FTIR-ATR spectrum in the mid-IR region (4000-400 cm(-1)) was used for the quantitative estimation by applying partial least square (PLS) regression models and the results were correlated with those obtained from reference methods. In the developed method, a cross-validation with 50% of the samples was used for PLS analysis along with a validation test set with 50% of the remaining samples. Good correlation models with a great accuracy were obtained for methanol (r(2)=99.4; RPD=12.8), alcoholic strength (r(2)=97.2; RPD=6.0), acetaldehyde (r(2)=98.2; RPD=7.5) and fusel alcohols (r(2) from 97.4 to 94.1; RPD from 6.2 to 4.1). These results corroborate the hypothesis that FTIR-ATR is a useful technique for the quality control of grape-derived spirits, whose practical application may improve the efficiency and quickness of the current laboratory analysis. Copyright © 2016 Elsevier Ltd. All rights reserved.

  6. Predicting the physical properties of tablets from ATR-FTIR spectra using partial least squares regression.

    Science.gov (United States)

    Taylor, Michael; Elhissi, Abdelbary M A

    2011-04-01

    The formulation of a new tablet is a time-consuming activity involving the preparation and testing of many different formulations with the aim of identifying one with the desired properties. In complex formulations it may not be clear which excipient is responsible for eliciting a particular property. To investigate partial least squares (PLS) regression analysis of ATR-FTIR spectra of tablets as a predictive and investigative tool in the formulation of novel tablet formulations. Magnesium stearate, lactose, acetylsalicylic acid and Ac-Di-Sol. ATR-FTIR spectra of a simple aspirin tablet formulation with varying amounts of the lubricant magnesium stearate were obtained. PLS models were built using the spectral data as the multivariate variable and various physical properties of the tablets as the univariate variables. PLS models that allowed good predications to be made for samples not included in the training set were obtained for tablet hardness and disintegration time. It was clear from PLS model regression coefficients that magnesium stearate was responsible for the variation in the tablets' physical properties. PLS regression in combination with ATR-FTIR spectroscopy has been shown to be a useful approach for the prediction of the physical properties of tablets.

  7. Fast quantitative determination of microbial rhamnolipids from cultivation broths by ATR-FTIR Spectroscopy

    Directory of Open Access Journals (Sweden)

    Hausmann Rudolf

    2008-10-01

    Full Text Available Abstract Background Vibrational spectroscopic techniques are becoming increasingly important and popular because they have the potential to provide rapid and convenient solutions to routine analytical problems. Using these techniques, a variety of substances can be characterized, identified and also quantified rapidly. Results The rapid ATR-FTIR (Attenuated Total Reflectance Fourier Transform Infrared Spectroscopy in time technique has been applied, which is suitable to quantify the concentrations of microbial rhamnolipids in a typical cultivation process. While the usually applied HPLC analysis requires an extensive and time consuming multi step extraction protocol for sample preparation, the ATR-FTIR-method allows the quantification of the rhamnolipids within 20 minutes. Accuracies between 0.5 g/l – 2.1 g/l for the different analytes were determined by cross validation of the calibration set. Even better accuracies between 0.28 g/l – 0.59 g/l were found for independent test samples of an arbitrarily selected cultivation. Conclusion ATR-FTIR was found to be suitable for the rapid analysis of rhamnolipids in a biotechnological process with good reproducibility in sample determination and sufficient accuracy. An improvement in accuracy through continuous expansion and validation of the reference spectra set seems very likely.

  8. Diamond-coated ATR prism for infrared absorption spectroscopy of surface-modified diamond nanoparticles

    Energy Technology Data Exchange (ETDEWEB)

    Remes, Z., E-mail: remes@fzu.cz [Institute of Physics of the ASCR, v.v.i., Cukrovarnicka 10, Praha 6 (Czech Republic); Kozak, H.; Rezek, B.; Ukraintsev, E.; Babchenko, O.; Kromka, A. [Institute of Physics of the ASCR, v.v.i., Cukrovarnicka 10, Praha 6 (Czech Republic); Girard, H.A.; Arnault, J.-C.; Bergonzo, P. [CEA, LIST, Diamond Sensors Laboratory, F-91191 Gif-sur-Yvette (France)

    2013-04-01

    Linear antenna microwave chemical vapor deposition process was used to homogeneously coat a 7 cm long silicon prism by 85 nm thin nanocrystalline diamond (NCD) layer. To show the advantages of the NCD-coated prism for attenuated total reflection Fourier transform infrared spectroscopy (ATR-FTIR) of nanoparticles, we apply diamond nanoparticles (DNPs) of 5 nm nominal size with various surface modifications by a drop-casting of their methanol dispersions. ATR-FTIR spectra of as-received, air-annealed, plasma-oxidized, and plasma-hydrogenated DNPs were measured in the 4000–1500 cm{sup −1} spectral range. The spectra show high spectral resolution, high sensitivity to specific DNP surface moieties, and repeatability. The NCD coating provides mechanical protection against scratching and chemical stability of the surface. Moreover, unlike on bare Si surface, NCD hydrophilic properties enable optically homogeneous coverage by DNPs with some aggregation on submicron scale as evidenced by scanning electron microscopy and atomic force microscopy. Compared to transmission FTIR regime with KBr pellets, direct and uniform deposition of DNPs on NCD-ATR prism significantly simplifies and speeds up the analysis (from days to minutes). We discuss prospects for in situ monitoring of surface modifications and molecular grafting.

  9. Submission of FeCrAl Feedstock for Support of AFC ATR-2 Irradiations

    Energy Technology Data Exchange (ETDEWEB)

    Field, Kevin G. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Barrett, Kristine E. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Sun, Zhiqian [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Yamamoto, Yukinori [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

    2016-09-16

    The Advanced Test Reactor (ATR) is currently being used to test accident tolerant fuel (ATF) forms destined for commercial nuclear power plant deployment. One irradiation program using the ATR for ATF concepts, Accident Tolerant Fuel-2 (ATF-2), is a water loop irradiation test using miniaturized fuel pins as test articles. This complicated testing configuration requires a series of pre-test experiments and verification including a flowing loop autoclave test and a sensor qualification test (SQT) prior to full test train deployment within the ATR. In support of the ATF-2 irradiation program, Oak Ridge National Laboratory (ORNL) has supplied two different Generation II FeCrAl alloys in rod stock form to Idaho National Laboratory (INL). These rods will be machined into dummy pins for deployment in the autoclave test and SQT. Post-test analysis of the dummy pins will provide initial insight into the performance of Generation II FeCrAl alloys in the ATF-2 irradiation experiment as well as within a commercial nuclear reactor.

  10. MELT WIRE SENSORS AVAILABLE TO DETERMINE PEAK TEMPERATURES IN ATR IRRADIATION TESTING

    Energy Technology Data Exchange (ETDEWEB)

    K. L. Davis; D. Knudson; J. Daw; J. Palmer; J. L. Rempe

    2012-07-01

    In April 2007, the Department of Energy (DOE) designated the Advanced Test Reactor (ATR) a National Scientific User Facility (NSUF) to advance US leadership in nuclear science and technology. By attracting new users from universities, laboratories, and industry, the ATR will support basic and applied nuclear research and development and help address the nation's energy security needs. In support of this new program, the Idaho National Laboratory (INL) has developed in-house capabilities to fabricate, test, and qualify new and enhanced temperature sensors for irradiation testing. Although most efforts emphasize sensors capable of providing real-time data, selected tasks have been completed to enhance sensors provided in irradiation locations where instrumentation leads cannot be included, such as drop-in capsule and Hydraulic Shuttle Irradiation System (HSIS) or 'rabbit' locations. To meet the need for these locations, the INL has developed melt wire temperature sensors for use in ATR irradiation testing. Differential scanning calorimetry and environmental testing of prototypical sensors was used to develop a library of 28 melt wire materials, capable of detecting peak irradiation temperatures ranging from 85 to 1500°C. This paper will discuss the development work and present test results.

  11. Cyclohexene Photo-oxidation over Vanadia Catalyst Analyzed by Time Resolved ATR-FT-IR Spectroscopy

    Energy Technology Data Exchange (ETDEWEB)

    Frei, Heinz; Mul, Guido; Wasylenko, Walter; Hamdy, M. Sameh; Frei, Heinz

    2008-06-04

    Vanadia was incorporated in the 3-dimensional mesoporous material TUD-1 with a loading of 2percent w/w vanadia. The performance in the selective photo-oxidation of liquid cyclohexene was investigated using ATR-FT-IR spectroscopy. Under continuous illumination at 458 nm a significant amount of product, i.e. cyclohexenone, was identified. This demonstrates for the first time that hydroxylated vanadia centers in mesoporous materials can be activated by visible light to induce oxidation reactions. Using the rapid scan method, a strong perturbation of the vanadyl environment could be observed in the selective oxidation process induced by a 458 nm laser pulse of 480 ms duration. This is proposed to be caused by interaction of the catalytic centre with a cyclohexenyl hydroperoxide intermediate. The restoration of the vanadyl environment could be kinetically correlated to the rate of formation of cyclohexenone, and is explained by molecular rearrangement and dissociation of the peroxide to ketone and water. The ketone diffuses away from the active center and ATR infrared probing zone, resulting in a decreasing ketone signal on the tens of seconds time scale after initiation of the photoreaction. This study demonstrates the high potential of time resolved ATR FT-IR spectroscopy for mechanistic studies of liquid phase reactions by monitoring not only intermediates and products, but by correlating the temporal behavior of these species to molecular changes of the vanadyl catalytic site.

  12. PERFORMA FOTOSINTESIS Kappaphycus sp. (strain Sumba) YANG DIUKUR BERDASARKAN EVOLUSI OKSIGEN TERLARUT PADA BEBERAPA TINGKAT SUHU DAN CAHAYA

    OpenAIRE

    Lideman Lideman; Asda Laining

    2015-01-01

    Penelitian ini bertujuan untuk mengetahui pengaruh suhu dan cahaya terhadap laju fotosintesis Kappaphycus sp. (strain Sumba) yang diukur berdasarkan perubahan oksigen terlarut. Pengukuran laju fotosintesis Kappaphycus sp. pertama-tama dilakukan pada suhu 20oC, 24oC, 28oC, dan 32oC pada tingkat cahaya 353 μmol photons m-2 s-1 untuk mendapatkan kurva fotosintesis versus suhu (kurva P-T). Selanjutnya, pengukuran laju fotosintesis dilakukan pada suhu 20oC, 24oC, dan 28oC dengan intensitas cahaya ...

  13. Perjanjian Berbahasa Asing yang Dibuat Oleh Notaris Berdasarkan Undang-Undang Nomor 30 Tahun 2004 Tentang Jabatan Notaris

    Directory of Open Access Journals (Sweden)

    Aliya Sandra Dewi

    2016-04-01

    Full Text Available Perjanjian Berbahasa Asing yang Dibuat Notaris Berdasarkan Undang-Undang Nomor 30 Tahun 2004. Posisi notaris sebagai fungsionaris dalam masyarakat dianggap sebagai tempat resmi yang dapat memperoleh saran. Segala sesuatu yang ditulis dan ditetapkan sudah benar dan pejabat produsen resmi dalam dokumen kekuatan hukum, khususnya dokumen yang berkaitan dengan kontrak yang terjadi di masyarakat. Dengan perkembangan hubungan antara subjek hukum warga negara yang berbeda untuk membuat perjanjian dalam bahasa asing selalu digunakan antara pihak-pihak yang memilikin perbedaan karena perbedaan bahasa kewarganegaraan.DOI:10.15408/jch.v1i1.2922

  14. Keragaman Genotip dan Jarak Genetik Sapi Madura Berdasarkan Restriction Fragment Length Polymorphism-DNA (RFLP-DNA

    Directory of Open Access Journals (Sweden)

    Marleny Leasa

    2013-02-01

    Full Text Available Penelitian ini bertujuan untuk mengetahui variasi genotip dan jarak genetik sapi Madura di Kabupaten Sampang dan Balai Besar Inseminasi Buatan (BBIB Singosari berdasarkan teknik RFLP. Digesti DNA genom dengan enzim EcoRI dan PstI menghasilkan fragmen DNA dengan ukuran yang bervariasi baik pada induk, pedet, dan pejantan unggul dengan kisaran antara 10000 bp sampai 980 bp dan 10000 bp sampai 1250 bp. Analisis MVSP1 dengan metode UPGMA untuk jarak genetik ditemukan bahwa sampel sapi Madura berada dalam 2 cluster dan 1 outgroup. Persentase jarak genetik berada pada rentangan 0 sampai 25%.   (Kata kunci: Variasi genotip, Jarak genetik, Sapi Madura, RFLP

  15. The ATM- and ATR-related SCD domain is over-represented in proteins involved in nervous system development.

    Science.gov (United States)

    Cara, Lukas; Baitemirova, Medina; Follis, Jack; Larios-Sanz, Maia; Ribes-Zamora, Albert

    2016-01-08

    ATM and ATR are cellular kinases with a well-characterized role in the DNA-damage response. Although the complete set of ATM/ATR targets is unknown, they often contain clusters of S/TQ motifs that constitute an SCD domain. In this study, we identified putative ATM/ATR targets that have a conserved SCD domain across vertebrates. Using this approach, we have identified novel putative ATM/ATR targets in pathways known to be under direct control of these kinases. Our analysis has also unveiled significant enrichment of SCD-containing proteins in cellular pathways, such as vesicle trafficking and actin cytoskeleton, where a regulating role for ATM/ATR is either unknown or poorly understood, hinting at a much broader and overarching role for these kinases in the cell. Of particular note is the overrepresentation of conserved SCD-containing proteins involved in pathways related to neural development. This finding suggests that ATM/ATR could be directly involved in controlling this process, which may be linked to the adverse neurological effects observed in patients with mutations in ATM.

  16. ATR preferentially interacts with common fragile site FRA3B and the binding requires its kinase activity in response to aphidicolin treatment.

    Science.gov (United States)

    Wan, Cheng; Kulkarni, Atul; Wang, Yuh-Hwa

    2010-04-01

    The instability of common fragile sites (CFSs) contributes to the development of a variety of cancers. The ATR-dependent DNA damage checkpoint pathway has been implicated in maintaining CFS stability, but the mechanism is incompletely understood. The goal of our study was to elucidate the action of the ATR protein in the CFS-specific ATR-dependent checkpoint response. Using a chromatin immunoprecipitation assay, we demonstrated that ATR protein preferentially binds (directly or through complexes) to fragile site FRA3B as compared to non-fragile site regions, under conditions of mild replication stress. Interestingly, the amount of ATR protein that bound to three regions of FRA3B peaked at 0.4microM aphidicolin (APH) treatment and decreased again at higher concentrations of APH. The total amounts of cellular ATR and several ATR-interacting proteins remained unchanged, suggesting that ATR binding to the fragile site is guided initially by the level of replication stress signals generated at FRA3B due to APH treatment and then sequestered from FRA3B regions by successive signals from other non-fragile site regions, which are produced at the higher concentrations of APH. This decrease in ATR binding to fragile site FRA3B at the higher concentrations of APH may account for the increasing number of chromosome gaps and breaks observed under the same conditions. Furthermore, inhibition of ATR kinase activity by treatment with 2-aminopurine (2-AP) or by over-expression of a kinase-dead ATR mutant showed that the kinase activity is required for the binding of ATR to fragile DNAs in response to APH treatment. Our results provide novel insight into the mechanism for the regulation of fragile site stability by ATR. Copyright 2010 Elsevier B.V. All rights reserved.

  17. Proses Berpikir Siswa SD dalam Melakukan Estimasi Masalah Berhitung Berdasarkan Jenis Kelamin

    Directory of Open Access Journals (Sweden)

    Muh. Rizal

    2013-01-01

    Full Text Available Abstract: The Thinking Process of Primary-school Students of Different Sexes in Estimating Arithmetic Problems. This case study is intended to explore the thinking process of the fifth-year students of different sexes in estimating arithmetic problems. Two students, one male and one female, belonging to the high achievers in a mathematics test were selected for the study and then interviewed, assigned to solve arithmetic problems, and finally asked to think aloud their thinking process. The study reveals that the thinking process of both the male and female subjects is in the form of accommodation as they ap­proached the arithmetic problems by repeatedly reading the tasks. Though employing the same thinking process, in the planning stage, the male subject made use of rounding and compatible number strategies, whereas the female one used only rounding strategy. In implementing the plan, the male subject em­ployed mental counting through assimilation, but the female one used algorithm through accommoda­tion. In the evaluating stage, the male subject traced back his work through mental counting, while the female one utilized reverse operations. Abstrak: Proses Berpikir Siswa SD dalam Melakukan Estimasi Masalah Berhitung Berdasarkan Jenis Kelamin. Penelitian ini ingin mendeskripsikan proses berpikir siswa laki-laki dan perempuan yang berkemampuan matematika tinggi dalam melakukan estimasi. Penelitian dilakukan di kelas V SD, dengan subjek satu siswa laki-laki dan satu siswa perempuan yang memiliki skor 75 ke atas dalam tes kemampuan matematika. Data dikumpulkan dengan wawancara, pemberian tes dan think aloud. Analisis dilakukan dengan menelaah seluruh data, reduksi data, pengolompokan data, kategorisasi, pengkodean, dan pemeriksaan kredibilitas data dengan triangulasi waktu. Hasil penelitian menunjukkan bahwa proses berpikir keduanya adalah akomodasi. Dalam membuat rencana, laki-laki menggunakan rounding dan compatible number strategy, sedangkan

  18. Analisis Perbandingan Kinerja Mach-Zehnder berdasarkan Ragam Format Modulasi pada Jaringan FTTH

    Directory of Open Access Journals (Sweden)

    ZULIA NURUL KARIMAH

    2017-06-01

    Full Text Available ABSTRAKPada jurnal ini dibuat pemodelan link FTTH pada software Optisystem 7.0 untuk mengetahui pengaruh dari Kerr effect dengan membandingkan performansi serat optik kaca dan serat optik plastik berdasarkan format modulasi berupa NRZ, RZ, RZ-DPSK, RZ-DQPSK dan CSRZ. Terdapat dua skenario, dengan skenario pertama, variabel input yang diubah adalah format modulasi pada Mach-zehnder, sedangkan pada skenario kedua, variabel yang diubah adalah pemakaian serat optik yang dipakai, yaitu serat optik bahan kaca, plastik dan hybrid kaca plastik. Hasil simulasi menunjukkan dengan efek linier dan non-linier pada kabel kaca yang menghasilkan performansi jaringan dari yang terbaik, dengan Q factor di atas 6 dan BER di bawah 10-9 adalah NRZ, RZ, RZ-DPSK, CSRZ dan RZ-DQPSK. Sedangkan dengan penggunaan kabel PMMA, yang menunjukkan performansi jaringan yang baik adalah dengan konfigurasi G652D-G652D-PMMA pada format modulasi NRZ, RZ, RZ-DPSK dan RZ-DQPSK. Efek non-linier yang terjadi pada jaringan ini hanya SPM dan XPM.Kata kunci: FTTH, mach-zehnder, format modulasi, efek non-linier, GOF, POF.ABSTRACTIn this journal is creating a FTTH link on Optisystem software 7.0 to determine the effect of Kerr effect by comparing the performance of fiber optic glass and plastic optical fiber based on modulation formats such as NRZ, RZ, RZ-DPSK, RZ-DQPSK and CSRZ. There are two scenarios, first, input variables are changed based on format in Mach-zehnder modulator, while in the second scenario, the changed variable is the material of optical fiber, the materials are optical fiber glass, plastic and hybrid plastic and glass. The simulation results based on comparison with linear and nonlinear effects on glass optical fiber, which produce Q factor above 6 and BER below 10-9 are NRZ, RZ, RZ-DPSK, CSRZ and RZ-DQPSK. While the use of PMMA cable, which indicates good network performance is the configuration G652D-G652D-PMMA on the modulation format NRZ, RZ, RZ-DPSK and RZ

  19. ANALISIS PENERIMAAN PENGGUNAAN OTOMASI PERPUSTAKAAN UNNES BERDASARKAN PENDEKATAN TECHNOLOGY ACCEPTANCE MODEL (TAM

    Directory of Open Access Journals (Sweden)

    Mia Winda Anzaeni

    2017-06-01

    Full Text Available Otomasi Perpustakaan merupakan sistem informasi perpustakaan berbasis web di Universitas Negeri Semarang. Penelitian ini bertujuan untuk mengetahui pengaruh dan menganalisis faktor-faktor yang mempengaruhi penerimaan penggunaan Otomasi Perpustakaan. Pendekatan yang digunakan adalah Technology Acceotance Model (TAM. Populasi dalam penelitian ini adalah mahasiswa pendidikan akuntansi di Universitas Negeri Semarang. Jumlah sampel sebanyak 127 responden. Teknik pengambilan sampel menggunakan non probablity sampling dengan sampling kuota. Metode pengumpulan data menggunakan kuesiioner. Data dianalisis menggunakan teknik path analysis. Hasil penelitian menunjukkan bahwa ada pengaruh positif dan signifikan manfaat (PU terhadap penerimaan (ACC sebesar 24,5%, kemudahan (PEOU terhadap ACC sebesar 24,8%, ATU terhadap ACC sebesar 40,7%, PU terhadap ATU sebesar 25,1%, PEOU terhadap ATU sebesar 24,5%, PU melalui ATU terhadap ACC sebesar 10,2% dan PEOU melalui ATU terhadap ACC sebesar 10%. Berdasarkan penelitian, dapat disimpulkan bahwa terdapat pengaruh perceived usefulness dan perceived ease of use terhadap acceptance baik secara langsung maupun tidak langsung dan pengarung langsung attitude terhadap acceptance. Disarankan kepada pengelola website Otomasi Perpustakaan agar dapat meningkatkan fungsi dari web sehingga pengguna dapat merasakan manfaat dan kemudahan web. Disarankan juga kepada peneliti selanjutnya untuk meneliti dengan objek yang berbeda, serta menambahkan variabel eksternal yang sesuai dengan penelitiannya. Library Automation is a web-based library information systems at the State University of Semarang. This study aims to determine the effect and analyze the factors that affect the acceptance of the use of Library Automation. The population in this research were students of accounting education at State University of Semarang. The total sample of 127 respondents. The sampling technique used is non-probability sampling with quota sampling

  20. PEMBUATAN RENCANA KEAMANAN INFORMASI BERDASARKAN ANALISIS DAN MITIGASI RISIKO TEKNOLOGI INFORMASI

    Directory of Open Access Journals (Sweden)

    Aan AlBone

    2009-01-01

    Full Text Available An information security plan consists of strategies and shared responsibility, the main aim is to reduce the risk of a potential threat to the company's operations. If the security plan is not based on the results of risk analysis, can cause weakness in the strategy to anticipate the threat of disruption and attacks on corporate assets. Weak strategy, caused by the process of identifying weaknesses and vulnerabilities of information technology is not done properly. Instead of the security plan should be based on the results of analysis and information technology risk mitigation, so that the security of the proposed strategy can effectively reduce the risks identified through risk analysis and mitigation. The process of risk analysis in addition to producing the identification of risk, also providing recommendations appropriate security controls with the risk would be reduced. The recommended security controls on risk analysis, will then be evaluated from the aspects of effectiveness and efficiency in reducing any risk, the risk mitigation process, so that this process will provide a strong foundation in information security plan to determine an overall, effective and efficient, since it is based with the impelementasinya priority. Sebuah rencana keamanan informasi terdiri atas strategi dan pembagian tanggungjawab, yang bertujuan utama untuk menurunkan risiko yang berpotensi menjadi ancaman terhadap operasional perusahaan. Jika penyusunan rencana keamanan tidak berdasarkan hasil analisis risiko, akan dapat menyebabkan lemahnya strategi dalam mengantisipasi ancaman gangguan dan serangan terhadap aset perusahaan. Lemahnya strategi tersebut, disebabkan oleh proses identifikasi kelemahan dan kerawanan teknologi informasi yang tidak dilakukan dengan baik. Sebaliknya dalam penyusunan rencana keamanan seharusnya didasari oleh hasil analisis dan mitigasi risiko teknologi informasi, agar strategi keamanan yang diusulkan dapat secara efektif menurunkan

  1. PEMBELAJARAN MATEMATIKA BERDASARKAN STRATEGIOPTIMIZE MENGGUNAKAN THINKTALK WRITE UNTUK MENINGKATKAN KEMAMPUAN KOMUNIKASI MATEMATIS

    Directory of Open Access Journals (Sweden)

    Rina Hariyati

    2013-12-01

    Full Text Available Tujuan penelitian ini untuk mendapatkan perangkat pembelajaran berdasarkan strategi OPTIMIZE menggunakan model pembelajaran TTW untuk meningkatkan kemampuan komunikasi matematis siswa kelas VIII dalam materi kubus dan balok yang valid, praktis, dan efektif. Pengembangan perangkat pembelajaran pada penelitian ini menggunakan model Plomp. Data TKKM diolah menggunakan t test, uji proporsi z, regresi sederhana, dan uji Gain. Pengembangan perangkat menghasilkan: (1 Perangkat valid  diperoleh skor rata-rata silabus 3,49; RPP, 3,34; buku peserta didik 3,32; LKPD 3,41; dan TKKM dalam kategori”valid”. (2 Perangkat praktis dari respon siswa dengan skor 3,87 dan kemampuan guru mengelola pembelajaran dengan skor 3,76, (3 pembelajaran efektif (a TKKM 90,63 melampaui KKM 80 dan mencapai ketuntasan klasikal lebih dari 80%, (b Terdapat perbedaan hasil belajar kelas eksperimen 90,63 dan kelas kontrol 78,92, (c Aktivitas peserta didik berpengaruh positif terhadapTKKMsebesar 61,4%, dan (d Ada peningkatan yang cukup signifikan hasil pretes 69,04 dan hasil postes 90,63. The purpose of this study is to determine the implementation of OPTIMIZE strategy using TTW learning model to improve mathematize communicating skill on cube and cuboid material in the VIII year which are valid, practice, and effective. The learning instrument development in this  research using Plomp model. TKKM data processed by t test, the proportion ofz, simple regression, and Gain test.The instrument development process produces (1 Valid learning instrument with validity score average: sylabus3.49; learning implementation planing 3.34; lesson material suplement 3.32;student worksheet 3.41; and TKKM is categorized “valid”. (2 Learning instrument is practice from student activity with score 3.87 categorized active and teacher ability on learning  with score 3.76, (3 Learning is effective: (a Postest TKKM reaches  90.63 passes minimum completeness criteria is 80 and reaches individual

  2. STRATEGI DAN PROSES BERPIKIR DALAM MENYELESAIKAN SOAL PEMECAHAN MASALAH BERDASARKAN TINGKAT KECEMASAN MATEMATIKA

    Directory of Open Access Journals (Sweden)

    Nurul Ismawati

    2015-03-01

    Full Text Available Strategi dan proses berpikir memiliki peran sangat penting dalam proses pemecahan masalah. Penelitian ini bertujuan untuk memperoleh deskripsi tentang strategi dan proses berpikir dalam menyelesaikan soal pemecahan masalah siswa kelas VII dengan tingkat kecemasan matematika tinggi, sedang, maupun rendah. Penelitian ini merupakan penelitian deskriptif dengan pendekatan kualitatif. Subyek dalam penelitian ini adalah 3 siswa dengan kecemasan matematika tinggi (KMT, 3 siswa dengan kecemasan matematika sedang (KMS, dan 3 siswa dengan kecemasan matematika rendah (KMR kelas VII MTs NU Nurul Huda Kudus. Penetapan subyek berdasarkan hasil tes skala kecemasan matematika. Hasil penelitian menunjukkan bahwa strategi dan proses berpikir diketahui sebagai berikut (1 tiga subyek KMT tidak dapat menggunakan sebagian besar tahapan strategi dan proses berpikir dalam menyelesaikan soal pemecahan masalah dengan tepat sehingga jawaban tidak tepat, (2 tiga subyek KMS dapat menggunakan sebagian besar tahapan strategi dan proses berpikir dalam menyelesaikan soal pemecahan masalah dengan tepat terhadap beberapa soal yang diberikan, dan (3 tiga subyek KMR dapat menggunakan sebagian besar tahapan strategi dan proses berpikir dalam menyelesaikan soal pemecahan masalah dengan tepat dan memperoleh jawaban tepat.Strategy and thinking process have a very important role in the process of problem solving. This study aimed to obtain a description of the strategies and thought processes in solving problem solving seventh grade students with mathematics anxiety levels. This research is a descriptive qualitative approach. Subjects in this study were three students with high math anxiety (KMT, 3 students with math anxiety medium (KMS, and 3 students with low math anxiety (KMR class VII MTs. NU NU Nurul Huda. Determination of the subject based on the results of tests of mathematics anxiety scale. The results showed that the strategies and thought processes KMT three subjects can not

  3. IMPLEMENTASI KEGIATAN PRAMUKA SEBAGAI ESTRAKURIKULER WAJIB BERDASARKAN KURIKULUM 2013 DALAM UPAYA PEMBINAAN KARAKTER

    Directory of Open Access Journals (Sweden)

    Dyah Lisayanti

    2014-08-01

    Full Text Available Penelitian ini dilatarbelakangi dua masalah yang dihadapi generasi muda yaknimasalah social dan kebangsaan. Untuk menjawabnya diperlukan pendidikan dankurikulum yang baik. Penelitian ini mengkaji tentang perencanaan, pelaksanaan,dan penilaian program kegiatan kepramukaan untuk menjawab bagaimana implementasikegiatan. Pramuka sebagai Ekstrakurikuler Wajib berdasarkan Kurikulum2013 dalam upaya pembinaan karakter. Penelitian ini menggunakan metodekualitatif, SMPN 2 Rembang sebagai obyek penelitian. Data dikumpulkan melaluiobservasi, wawancara, dan dokumentasi. Data diolah dan diperiksa menggunakanteknik triangulasi untuk validasi dan analisis interaktif. Diperoleh hasil sebagaiberikut: (1 ada 7 hal yang ditemukan dalam perencanaan, yaitu: Pembina Pramukabelum bersertifikat; belum ada program kerja; belum ada transparansi dana; AD/ART Gerakan Pramuka belum tersusun baik; kurangnya fasilitas pendukung; bertugasrangkap; serta perijinan mengikuti kegiatan di jam efektif belum jelas; (2dalam pelaksanaan, ada 2 hal yaitu: kegiatan kurang variatif dan belum ada RencanaPelaksanaan Kegiatan (RPK, Program Tahunan, Program Semester, Silabus,Materi Kegiatan, dan penilaian; (3 ada 2 hal yang ditemukan di penilaian, yaitu:belum ada reward bagi yang berprestasi dalam kegiatan rutin dan incidental danevaluasi belum dilaksanakan rutin. Peneliti menyimpulkan Pramuka di SMPN 2Rembang secara umum sudah baik. Disarankan agar kegiatan Pramuka sebagaiekstrakurikuler wajib dilaksanakan secara professional dan penuh tanggungjawab The background of the study followed by two problems, young generation at social and nationalones. The objective are the planning, the implementation, and the evaluation. so thatit can answer the problem of how the implementation of Scouting activity program as acompulsory extracurricular based on the Curriculum 2013 can be done. This thesis useda qualitative method. The object of this study at SMPN 2 Rembang. Data were collectedthrough

  4. Karakterisasi Carica pubescens di Dataran Tinggi Dieng, Jawa Tengah berdasarkan sifat morfologi, kapasitas antioksidan, dan pola pita protein

    Directory of Open Access Journals (Sweden)

    AINUN NIKMATI LAILY

    2012-05-01

    Full Text Available Laily AN, Suranto, Sugiyarto. 2012. Karakterisasi Carica pubescens di Dataran Tinggi Dieng, Jawa Tengah berdasarkan sifat morfologi, kapasitas antioksidan, dan pola pita protein. Bioteknologi 9: 7-13. Carica pubescens Lenne & K. Koch merupakan jenis tanaman buah yang pertamakali dibudidayakan di Amerika Selatan dan beradaptasi pada lingkungan dataran tinggi, misalnya Dataran Tinggi Dieng, Jawa Tengah (∼2000 m dpl. C. pubescens memiliki daerah persebaran sempit dan variasi intraspesies terbatas atau belum diketahui. Oleh karenanya, diperlukan informasi mengenai karakter tanaman pada berbagai ketinggian sehingga dimungkinkan untuk memperluas daerah penyebaran melalui transplantasi di daerah lain. Karakterisasi dapat dilakukan berdasarkan karakter morfologi, kandungan kimia, dan pola pita protein. Penelitian ini bertujuan untuk mendeskripsikan karakter morfologi, kandungan kimia (kapasitas antioksidan, dan pola pita protein dengan pewarnaan commasie brillian blue pada C. pubescens di Dataran Tinggi Dieng. Penelitian lapangan dilakukan di Desa Kejajar (1400 m dpl, Patak Banteng (1900 m dpl, dan Sembungan (2400 m dpl. Pengamatan karakter morfologi dilakukan di lapangan dan dilanjutkan di laboratorium. Karakter morfologi, kandungan kimia (kapasitas antioksidan, dan pola pita protein C. pubescens dianalisis secara deskriptif. Hasil penelitian menunjukkan bahwa karakter morfologi C. pubescens di Dataran Tinggi Dieng bervariasi pada batang, daun, dan buah. Kapasitas antioksidannya bervariasi dengan urutan dari ketinggian 2400 m dpl > 1900 m dpl > 1400 m dpl. Pola pita proteinnya tidak bervariasi antar ketinggian, namun berbeda dengan C. papaya. Keseragaman pola pita protein menunjukkan kestabilan genetik C. pubescens tidak dipengaruhi oleh perubahan lingkungan.

  5. Faktor yang Mempengaruhi Kriteria Lokasi Berdagang Pedagang Kaki Lima Berdasarkan Preferensi Pedagang Kaki Lima di Kawasan Pasar Baru Gresik

    Directory of Open Access Journals (Sweden)

    Fitri Dwi Agus Maulidiyah

    2017-01-01

    Full Text Available Permasalahan utama PKL di Kawasan Pasar Baru Gresik adalah banyaknya kegagalan relokasi yang disebabkan kurangnya keterlibatan PKL dalam  menentukan lokasi berdagang PKL. Oleh karena itu, penelitian ini bertujuan untuk menentukan faktor yang mempengaruhi kriteria lokasi pedagang kaki lima berdasarkan preferensi pedagang kaki lima itu sendiri di Kawasan Pasar Baru Gresik. Tahapan penelitian yang dilakukan adalah mengidentifikasi karakteristik pedagang kaki lima dengan menggunakan teknik analisa statistik desktiptif. Kemudian menentukan faktor yang mempengaruhi kriteria lokasi berdagang berdasarkan preferensi pedagang kaki lima dengan menggunakan content analysis. Maka dari itu hasil dari penelitian adalah faktor yang mempengaruhi kriteria lokasi berdagang pedagang kaki lima di Kawasan Pasar Baru Gresik yaitu sebagai berikut: (1 Lokasi berdagang yang strategis; (2 Harga sewa lahan/kios; (3 Dekat dengan kegiatan masyarakat; (4 Visibilitas; (5 Retribusi; (6 Dekat dengan permukiman penduduk; (7 Ketersediaan lahan parkir; (8 Dekat dengan terminal/stasiun; (9 Ketersediaan tempat pembuangan sampah; (10 Dekat dengan tempat tinggal; (11 Ketersediaan transportasi umum (12 Ketersdiaan jaringan air bersih; (13 Memiliki akses keluar dan masuk; (14 Penerimaan produk yang ditawarkan; (15 Ketersediaan drainase; (16 Ketersediaan pelayanan listrik; (17 Pengelompokkan jenis barang dagangan; (18 Luas tempat berdagang.

  6. SINTESIS DAN KARAKTERISASI GAMMA ALUMINA (γ-Al2O3 DARI KAOLIN ASAL TATAKAN, SELATAN BERDASARKAN VARIASI TEMPERATUR KALSINASI

    Directory of Open Access Journals (Sweden)

    Utami Irawati

    2013-05-01

    Full Text Available Sintesis dan karakterisasi gamma alumina (γ-Al2O3 dari kaolin asal Tatakan, Kalimantan Selatan berdasarkan variasi temperatur kalsinasi telah dilakukan. Gamma alumina (γ-Al2O3 diperoleh dengan metode sol-gel. Polyethylene glycol 6000 digunakan sebagai template pembentuk pori, presipitasi dilakukan dengan penambahan NH4OH 2,6 M hingga pH larutan 8-9 untuk memperoleh Al(OH3. Kalsinasi dilakukan pada temperatur 500, 600, 700 dan 800 0C. Gamma alumina (γ-Al2O3 hasil kalsinasi kemudian di analisis menggunakan Fourier Transform Infrared (FTIR dan X-Ray Diftraction (XRD. Hasil analisis karakterisasi FTIR menunjukkan pada masing-masing variasi temperatur terbentuknya kerangka gamma alumina (γ-Al2O3 dan hasil XRD menunjukkan fasa alumina yang terbentuk adalah gamma alumina (γ-Al2O3. Struktur terbaik dari gamma alumina (γ-Al2O3 berdasarkan kekristalannya yaitu pada temperatur kalsinasi 700 0C dengan nilai 2θ = 46,06; 60,07 dan 66,93.

  7. ATR, Claspin and the Rad9-Rad1-Hus1 complex regulate Chk1 and Cdc25A in the absence of DNA damage

    DEFF Research Database (Denmark)

    Sørensen, Claus Storgaard; Syljuåsen, Randi G; Lukas, Jiri

    2004-01-01

    The ATR and Chk1 kinases are essential to maintain genomic integrity. ATR, with Claspin and the Rad9-Rad1-Hus1 complex, activates Chk1 after DNA damage. Chk1-mediated phosphorylation of the Cdc25A phosphatase is required for the mammalian S-phase checkpoint. Here, we show that during physiological...... S phase the regulation of the Chk1-Cdc25A pathway depends on ATR, Claspin, Rad9, and Hus1. Human cells with chemically or genetically ablated ATR showed inhibition of Chk1-dependent phosphorylation of Cdc25A, and they accumulated Cdc25A without external DNA damage. Furthermore, si......RNA-mediated depletion of Claspin, Rad9 and Hus1 also stabilized Cdc25A. ATR ablation also inhibited the activatory phosphorylation of Chk1 on serine 345. Thus, the ATR-Chk1-Cdc25A pathway represents an integral part of physiological S-phase progression, and interference with this mechanism undermines viability...

  8. ATR- and ATM-Mediated DNA Damage Response Is Dependent on Excision Repair Assembly during G1 but Not in S Phase of Cell Cycle.

    Science.gov (United States)

    Ray, Alo; Blevins, Chessica; Wani, Gulzar; Wani, Altaf A

    2016-01-01

    Cell cycle checkpoint is mediated by ATR and ATM kinases, as a prompt early response to a variety of DNA insults, and culminates in a highly orchestrated signal transduction cascade. Previously, we defined the regulatory role of nucleotide excision repair (NER) factors, DDB2 and XPC, in checkpoint and ATR/ATM-dependent repair pathway via ATR and ATM phosphorylation and recruitment to ultraviolet radiation (UVR)-induced damage sites. Here, we have dissected the molecular mechanisms of DDB2- and XPC- mediated regulation of ATR and ATM recruitment and activation upon UVR exposures. We show that the ATR and ATM activation and accumulation to UVR-induced damage not only depends on DDB2 and XPC, but also on the NER protein XPA, suggesting that the assembly of an active NER complex is essential for ATR and ATM recruitment. ATR and ATM localization and H2AX phosphorylation at the lesion sites occur as early as ten minutes in asynchronous as well as G1 arrested cells, showing that repair and checkpoint-mediated by ATR and ATM starts early upon UV irradiation. Moreover, our results demonstrated that ATR and ATM recruitment and H2AX phosphorylation are dependent on NER proteins in G1 phase, but not in S phase. We reasoned that in G1 the UVR-induced ssDNA gaps or processed ssDNA, and the bound NER complex promote ATR and ATM recruitment. In S phase, when the UV lesions result in stalled replication forks with long single-stranded DNA, ATR and ATM recruitment to these sites is regulated by different sets of proteins. Taken together, these results provide evidence that UVR-induced ATR and ATM recruitment and activation differ in G1 and S phases due to the existence of distinct types of DNA lesions, which promote assembly of different proteins involved in the process of DNA repair and checkpoint activation.

  9. Identification of two novel regulatory genes involved in pristinamycin biosynthesis and elucidation of the mechanism for AtrA-p-mediated regulation in Streptomyces pristinaespiralis.

    Science.gov (United States)

    Wang, Wenfang; Tian, Jinzhong; Li, Lei; Ge, Mei; Zhu, Hong; Zheng, Guosong; Huang, He; Ruan, Lijun; Jiang, Weihong; Lu, Yinhua

    2015-09-01

    In this study, using a transposon-based strategy, two novel regulatory genes were identified as being involved in the biosynthesis of both pristinamycin I (PI) and II (PII) in Streptomyces pristinaespiralis, including a TetR-family regulatory gene atrA-p (SSDG_00466) and an orphan histidine kinase gene SSDG_02492. The mechanism by which AtrA-p exerted a positive role in pristinamycin production was elucidated. We showed that deletion of atrA-p resulted in a delayed production of both PI and PII as well as reduced PII production. Transcriptional analysis integrated with electrophoretic mobility shift assays (EMSAs) demonstrated that AtrA-p played a positive role in pristinamycin production by directly activating the transcription of two cluster-situated regulatory genes, spbR and papR5, which encode a γ-butyrolactone receptor protein and a TetR-family repressor, respectively. The precise AtrA-p-binding sites upstream of these two targets were determined, which allowed the identification of a relatively conserved binding motif comprising two 5-nt inverted repeats separated by a variable 5-nt sequence (5'-GGAAT-n5-ATTCC-3') possibly required for the regulation of AtrA-like regulators in Streptomyces. Base substitutions of the AtrA-p-binding sites on the genome caused similar decreases in spbR and papR5 transcription as those observed in ∆atrA-p. Taken together, herein, a novel mechanism for AtrA-dependent regulation of antibiotic biosynthesis was revealed in S. pristinaespiralis, which is distinct from those of its homologs, AtrA-c from Streptomyces coelicolor, AtrA-g from Streptomyces griseus, and AtrA from Streptomyces roseosporus that perform their effects in antibiotic biosynthesis directly via pathway-specific activator genes or the biosynthetic structural genes.

  10. Drosophila dSmad2 and Atr-I transmit activin/TGFbeta signals.

    Science.gov (United States)

    Das, P; Inoue, H; Baker, J C; Beppu, H; Kawabata, M; Harland, R M; Miyazono, K; Padgett, R W

    1999-02-01

    Much is known about the three subfamilies of the TGFbeta superfamily in vertebrates-the TGFbetas, dpp/BMPs, and activins. Signalling in each subfamily is dependent on both shared and unique cell surface receptors and Smads. In invertebrates, mutants for BMP pathway components have been extensively characterized, but thus far, evidence for an activin- or TGFbeta-like pathway has been lacking, preventing the use of the extensive genetic tools available for studying several key issues of TGFbeta signalling. Here we report the identification of dSmad2, a new Drosophila Smad which is most related to the activin/TGFbeta-pathway Smads, Smad2 and Smad3. We show that dSmad2 induces activin responsive genes in Xenopus animal cap assays. dSMAD2 is phosphorylated by ATR-I and PUNT, but not by activated THICK VEINS, and translocates to the nucleus upon activation. Furthermore, we show that dSMAD2 complexes with MEDEA only in the presence of ATR-I and PUNT. dSmad2 is expressed in the imaginal disks and in the outer proliferation centre of the larval brain, suggesting that it may have important proliferative and patterning roles during Drosophila development. Our data provide evidence for the existence of an activin/TGFbeta pathway in Drosophila. We show that dSmad2 participates in this pathway, and that it functions with Atr-I and punt. We show that Medea also participates in this pathway, indicating the conservation of roles for Co-Smads in diverse phyla. Expression patterns of dSmad2 suggest that it functions in imaginal disks and in the brain, in tissues that undergo extensive patterning and proliferation.

  11. Root discrimination of closely related crop and weed species using FT MIR-ATR spectroscopy

    Directory of Open Access Journals (Sweden)

    Catharina eMeinen

    2015-09-01

    Full Text Available Root discrimination of species is a pre-condition for studying belowground competition processes between crop and weed species. In this experiment, we tested Fourier transform mid-infrared (FT MIR-attenuated total reflection (ATR spectroscopy to discriminate roots of closely related crop and weed species grown in the greenhouse: maize/barnyard grass, barley/wild oat, wheat/blackgrass (Poaceae, and sugar beet/common lambsquarters (Chenopodiaceae. Fresh (moist and dried root segments as well as ground roots were analyzed by FT MIR-ATR spectroscopy. Root absorption spectra showed species specific peak distribution and peak height. A clear separation according to species was not possible with fresh root segments. Dried root segments (including root basis, middle section and root tip of maize/barnyard grass and sugar beet/common lambsquarters formed completely separated species clusters. Wheat and blackgrass separated in species specific clusters when root tips were removed from cluster analysis. A clear separation of dried root segments according to species was not possible in the case of barley and wild oat. Cluster analyses of ground roots revealed a 100 % separation of all tested crop and weed species combinations. Spectra grouped in Poaceae and Chenopodiaceae clusters. Within the Poaceae cluster, C3 and C4 species differed significantly in heterogeneity. Thus, root spectra reflected the degree of kinship. To quantify species proportion in root mixtures, a two- and a three-species model for species quantification in root mixtures of maize, barnyard grass, and wild oat was calculated. The models showed low standard errors of prediction (RMSEP and high residual predictive deviation (RPD values in an external test set validation. Hence, FT MIR-ATR spectroscopy seems to be a promising tool for root research even between closely related plant species.

  12. PENGENDALIAN BANJIR BERDASARKAN KELAS KEMAMPUAN LAHAN DI SUB DAS MARTAPURA KABUPATEN BANJAR KALIMANTAN SELATAN

    Directory of Open Access Journals (Sweden)

    Syarifuddin Kadir

    2017-10-01

    Banjar sebanyak 10 kecamatan dan 65 desa. Tujuan penelitian ini  mengetahui kelas kemampuan lahan menjadi acuan penentuan arahan penggunaan lahan, sedangkan manfaat yang diharapkan agar dapat menjadi acuan pengendalian kerawanan banjir untuk jangka pendek dan jangka panjang.  Penentuan kelas kemampuan lahan dilakukan melalui metode pendekatan secara spasial dengan memanfaatkan sistem informasi Geografis. Hasil kajian diperoleh : 1 dominasi parameter kelas kemampuan lahan: a kelerengan, > 65 % seluas 31,46 %; b drainase, baik 94,2%; c Volume Batuan Permukaan, banyak 36,5%; d erosi sedang 49,7%; e kedalaman tanah dalam 66,6%; f tekstur tanah, Agak halus; liat berpasir, lempung 57,95%. 2 kelas kemampuan lahan sub-sub DAS Riam Kiwa sub DAS Martapura III sampai IV dan VI sampai VIII. 3Pengendalian banjir secara optimal melalui rehabilitasi hutan dan lahan berdasarkan kelas kemampuan lahan di sub DAS Martapura Kabupaten Banjar.

  13. Penyimpangan Penggunaan Lahan Berdasarkan Rencana Tata Ruang Wilayah Kabupaten Aceh Barat

    Directory of Open Access Journals (Sweden)

    Hairul Basri

    2013-04-01

    Full Text Available Abstrak. Penelitian ini bertujuan untuk: (1 mengevaluasi kesesuaian alokasi ruang RTRW Kabupaten Aceh Barat tahun 2012- 2031 dengan alokasi penetapan kawasan hutan Kabupaten Aceh Barat berdasarkan SK Menhutbun No. 170/Kpts- II/2000, dan (2 mengevaluasi penyimpangan penggunaan lahan eksisting Kabupaten Aceh Barat tahun 2012 dengan RTRW Kabupaten Aceh Barat tahun 2012-2031 dan (3 membahas secara umum penyebab dari penyimpangan penggunaan lahan dan dampak yang ditimbulkannya. Penelitian ini dilaksanakan dari bulan Maret 2012 hingga Februari 2013 di Kabupaten Aceh Barat dan di Laboratorium Penginderaan Jauh dan Kartografi Fakultas Pertanian Universitas Syiah Kuala. Penelitian ini menggunakan metode deskriptif dengan mengumpulkan berbagai data sekunder dan primer yang diperlukan dan analisis tumpang tindih peta (overlay serta cek lapangan (ground check penggunaan lahan terkini. Hasil penelitian menunjukkan terjadi penyimpangan alokasi ruang RTRW Kabupaten Aceh Barat tahun 2012-2031 terhadap kawasan hutan Kabupaten Aceh Barat yang ditetapkan dalam SK Menhutbun No. 170/Kpts- II/2000 seluas 6.663,45 ha (2,41%. Penggunaan lahan eksisting Kabupaten Aceh Barat tahun 2012 juga menunjukkan terjadi penyimpangan terhadap alokasi ruang RTRW Kabupaten Aceh Barat tahun 2012-2031 yaitu seluas 25.319,21 ha (9,16%. Secara umum faktor penyebab terjadinya penyimpangan penggunaan lahan adalah pemekaran kabupaten/kota, pengembangan infrastruktur wilayah, pengembangan usaha perkebunan dan pertambangan. Penyimpangan penggunaan lahan tersebut berdampak kepada semakin luasnya deforestasi, meningkatnya koefisien limpasan dan frekuensi banjir. Deviation of Land Use Based on Spatial Planning of West Aceh District Abstract. This study aimed to: (1 evaluate the suitability of spatial allocation of space in West Aceh district from 2012 to 2031 with the allocation of forest establishment of West Aceh by Decree of Menhutbun No. 170/Kpts-II/2000, (2 evaluate the deviation of the

  14. KERAGAMAN DURIAN BERDASARKAN FRAGMEN INTERNAL TRANSCRIBED SPACERS (ITS DNA RIBOSOMAL MELALUI ANALISIS PCR-RFLP

    Directory of Open Access Journals (Sweden)

    R. U. Hikmah

    2016-11-01

    Full Text Available Durian adalah salah satu jenis buah-buahan tropis yang memiliki nilai ekonomi tinggi. Durian memiliki bermacam-macam kultivar dengan morfologi yang sulit untuk membedakan. jaminan identitas penting bagi informasi mendasar dalam meningkatkan efisiensi pemuliaan dan pengembangan durian. identifikasi molekuler dianggap lebih akurat dibandingkan dengan karakter morfologi. Polymerase Chain Reaction Restriction Fragment Length Polimorfism (PCR-RFLP adalah metode untuk menganalisis hasil DNA fragmen panjang perbedaan yang mencerna menggunakan enzim restriksi dengan endonuklease. Sampel yang digunakan dalam penelitian ini adalah aksesi durian diambil secara acak di kecamatan Gunungpati, Semarang. Genomik DNA diisolasi berdasarkan protokol Kit nukleon Phytopure dengan modifikasi. ITS wilayah ribosom DNA diamplifikasi menggunakan teknik PCR-RFLP mengeksploitasi primer spesifik L ITS dan ITS 4 menghasilkan ITS panjang fragmen pada 800 bp. Amplikon yang dicerna menggunakan enam enzim restriksi AluI, Eco471, Bsp1431, BsuRI, Mph11301 dan Ade1. Hasil penelitian dari 11 aksesi durian yang diperiksa menunjukkan bahwa enzim Bsp1431 memiliki dua situs tertentu yang dipotong pada ukuran 550 bp dan 120 bp. enzim BsuR1 memiliki luka situs tertentu dalam ukuran 600 bp. Sedangkan enzim Eco471 telah mencerna situs spesifik pada ukuran 450 bp. Kesimpulan dari penelitian ini adalah durian nomor aksesi ke-12, 15, dan 17 memiliki hubungan genetik dekat dan diduga berada di salah satu spesies.Durian is one of the types of tropical fruits that has high economic value. Durian has an assortment of cultivars with morphology that are difficult to distinguish. Identity assurance is important for the fundamental information in increasing the efficiency of breeding and development of durian. Molecular identification is considered to be more accurate than the morphological characters. Polymerase Chain Reaction Restriction Fragment Length Polimorfism (PCR-RFLP is a method to analyze

  15. Kajian Biblika Kecemburuan Allah Terhadap Penyembahan Berhala Berdasarkan Keluaran 20:4-6

    Directory of Open Access Journals (Sweden)

    Queency Christie Wauran

    2015-09-01

    Full Text Available Dalam Perjanjian Lama kecemburuan Allah selalu berada dalam konteks penyembahan berhala. Hukum Taurat yang kedua dengan jelas melarang penyembahan kepada patung oleh karena alasan ini yaitu Allah yang cemburu. Tujuan penulisan artikel ini adalah untuk mengetahui arti kecemburuan Allah terhadap penyembahan berhala berdasarkan kitab Keluaran 20:4-6 dan implikasinya bagi kehidupan orang percaya. Adapun kesimpulan artikel ini adalah pertama, kecemburuan Allah terhadap penyembahan berhala menyatakan bahwa Allah tidak dapat direpresentasikan dalam bentuk apapun karena kecemburuan Allah ini menyatakan bahwa Ia adalah Allah yang kudus. Dengan demikian, hanya Allah satu-satunya yang harus disembah oleh orang percaya. Kedua, kecemburuan Allah terhadap penyembahan berhala menyatakan bahwa tidak boleh ada objek penyembahan yang lain selain kepada Allah karena penyembahan kepada berhala menandakan perzinaan rohani yang mengakibatkan kecemburuan Allah. Oleh karena itu, orang percaya harus menolak segala bentuk penyembahan berhala. Ketiga, penyembahan kepada berhala mendatangkan kecemburuan Allah karena kecemburuan Allah ini menyatakan kesetiaan-Nya atas perjanjian dengan umat-Nya. Dengan demikian, kecemburuan Allah seharusnya menjadi dasar dari penyembahan kepada Allah. Keempat, kecemburuan Allah atas penyembahan berhala mendatangkan hukuman karena kecemburuan Allah menyatakan keadilan-Nya dalam hal pemberian hukuman sebagai konsekuensi bagi penyembah berhala. Kelima, kecemburuan Allah atas penyembahan berhala menyatakan bahwa Allah mengasihi umat-Nya dan sekaligus menyatakan keadilan Allah dalam hal pemberian berkat bagi yang mengasihi-Nya. Kasih Allah mendasari hubungan-Nya dengan umat-Nya, dengan demikian kasih juga menjadi dasar hubungan orang percaya dengan Allah.In the Old Testament, the jealousy of God is always in the context of worshipping idols. The second commandment clearly prohibits the worshipping of statues for this reason, that God is jealous

  16. Model Prediksi Indeks Massa Tubuh Remaja Berdasarkan Riwayat Lahir dan Status Gizi Anak

    Directory of Open Access Journals (Sweden)

    Demsa Simbolon

    2013-08-01

    Full Text Available Usia remaja merupakan salah satu kelompok umur rentan terhadap masalah gizi sebagai akibat riwayat lahir dan status gizi buruk sebelumnya yang konsekuensinya buruk dalam daur hidup berikutnya. Penelitian ini menggunakan data Indonesia Family Life Survey (IFLS dengan desain studi longitudinal, bertujuan memperoleh model prediksi IMT remaja berdasarkan riwayat lahir dan status gizi anak. Sampel berjumlah 837 balita dipilih secara multistage random sampling. Riwayat lahir diukur dari berat lahir dan umur kehamilan. Pengukuran status gizi dilakukan mulai balita sampai remaja (15 - 19 tahun. Analisis menggunakan regresi logistik multinomial. Rata-rata berat lahir bayi perempuan 147 gram lebih rendah dibandingkan bayi laki-laki. Terdapat 7,4% berat bayi lahir rendah, dengan prevalensi tertinggi pada perempuan (9,3%. Terdapat masalah gizi ganda pada balita yaitu 47% stunting, 29,7% underweight, 10% wasting, dan 13,9% gemuk/obesitas. Sebesar 51,7% balita mengalami gangguan pertumbuhan dengan stunting sebagai kontribusi terbesar. Risiko remaja gemuk/obesitas diprediksi dari kelahiran prematur, stunting usia 8 - 12 tahun, dan gemuk/obesitas usia 8 - 12 tahun. Risiko remaja kurus diprediksi dari IMT kurus saat berusia 5 - 9 tahun dan usia 8 - 12 tahun. Perlu intervensi yang diprioritaskan pada remaja perempuan untuk mencegah kelahiran prematur dan fetal programming, serta evaluasi program Pemberian Makan Tambahan (PMT pada balita yang lebih memfokuskan pada penambahan berat badan tanpa mempertimbangkan tinggi badan. Adolescents is one of the age groups vulnerable to nutritional problems as a result of poor birth history and nutritional status, and then have bad consequences the next life cycle. Research using data Indonesia Family Life Survey (IFLS with longitudinal study designs to predict adolescent body mass index based on the history of birth and child nutritional status. Sample consisted of 837 children selected by multistage random sampling. History

  17. AGR-3/4 Final Data Qualification Report for ATR Cycles 151A through 155B-1

    Energy Technology Data Exchange (ETDEWEB)

    Pham, Binh T. [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2015-03-01

    This report provides the qualification status of experimental data for the entire Advanced Gas Reactor 3/4 (AGR 3/4) fuel irradiation. AGR-3/4 is the third in a series of planned irradiation experiments conducted in the Advanced Test Reactor (ATR) at Idaho National Laboratory (INL) for the AGR Fuel Development and Qualification Program, which supports development of the advanced reactor technology under the INL ART Technology Development Office (TDO). The main objective of AGR-3/4 irradiation is to provide a known source of fission products for subsequent transport through compact matrix and structural graphite materials due to the presence of designed-to-fail fuel particles. Full power irradiation of the AGR 3/4 test began on December 14, 2011 (ATR Cycle 151A), and was completed on April 12, 2014 (end of ATR Cycle 155B) after 369.1 effective full power days of irradiation. The AGR-3/4 test was in the reactor core for eight of the ten ATR cycles between 151A and 155B. During the unplanned outage cycle, 153A, the experiment was removed from the ATR northeast flux trap (NEFT) location and stored in the ATR canal. This was to prevent overheating of fuel compacts due to higher than normal ATR power during the subsequent Powered Axial Locator Mechanism cycle, 153B. The AGR 3/4 test was inserted back into the ATR NEFT location during the outage of ATR Cycle 154A on April 26, 2013. Therefore, the AGR-3/4 irradiation data received during these 2 cycles (153A and 153B) are irrelevant and their qualification status isnot included in this report. Additionally, during ATR Cycle 152A the ATR core ran at low power for a short enough duration that the irradiation data are not used for physics and thermal calculations. However, the qualification status of irradiation data for this cycle is still covered in this report. As a result, this report includes data from 8 ATR Cycles: 151A, 151B, 152A, 152B, 154A, 154B, 155A, and 155B, as recorded in the Nuclear Data Management and

  18. Shear Punch Testing on ATR Irradiated MA956 FeCrAl Alloy

    Energy Technology Data Exchange (ETDEWEB)

    Saleh, Tarik A. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Quintana, Matthew Estevan [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Romero, Tobias J. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2017-06-13

    The shear punch testing of irradiated and control MA956 (FeCrAl) Alloy from the NSUF-ATR-UCSB irradiation is presented. This is the first data taken on a new shear punch fixture design to test three 1.5mm punches from each 8mm x 0.5mm Disc Multipurpose Coupon (DMC). Samples were irradiated to 6.1dpa at a temperature of 315°C and 6.2 dpa at 400°C.

  19. Characterisation Of Polysacharides And Lipids From Selected Green Algae Species By FTIR-ATR Spectroscopy

    Directory of Open Access Journals (Sweden)

    Bartošová Alica

    2015-06-01

    Full Text Available Fourier transform infrared (FTIR spectroscopy was used in this study to identify and determine spectral features of Chromochloris zofingiensis (Dönz Fucíková et L.A. Lewis (SAG 211-14, Gottingen, Germany, Acutodesmus obliguus (Turpin Hegewald (SAG 276-1, Gottingen, Germany and Chlorella sorokiniana (K. Brandt Pröschold et Darienko (SAG 211-40c, Gottingen, Germany. Polysaccharides and lipids from these three algae species were determined using Fourier Transformed Infrared Spectroscopy (FTIR with ATR accessory with diamante crystal in spectral range from 400 – 4000 cm−1 and resolution 4.

  20. Radar automatic target recognition (ATR) and non-cooperative target recognition (NCTR)

    CERN Document Server

    Blacknell, David

    2013-01-01

    The ability to detect and locate targets by day or night, over wide areas, regardless of weather conditions has long made radar a key sensor in many military and civil applications. However, the ability to automatically and reliably distinguish different targets represents a difficult challenge. Radar Automatic Target Recognition (ATR) and Non-Cooperative Target Recognition (NCTR) captures material presented in the NATO SET-172 lecture series to provide an overview of the state-of-the-art and continuing challenges of radar target recognition. Topics covered include the problem as applied to th

  1. Binding of a biosynthetic intermediate to AtrA modulates the production of lidamycin by Streptomyces globisporus.

    Science.gov (United States)

    Li, Xingxing; Yu, Tengfei; He, Qing; McDowall, Kenneth J; Jiang, Bingya; Jiang, Zhibo; Wu, Linzhuan; Li, Guangwei; Li, Qinglian; Wang, Songmei; Shi, Yuanyuan; Wang, Lifei; Hong, Bin

    2015-06-01

    The control of secondary production in streptomycetes involves the funneling of environmental and physiological signals to the cluster-situated (transcriptional) regulators (CSRs) of the biosynthetic genes. For some systems, the binding of biosynthetic products to the CSR has been shown to provide negative feedback. Here we show for the production of lidamycin (C-1027), a clinically relevant antitumor agent, by Streptomyces globisporus that negative feedback can extend to a point higher in the regulatory cascade. We show that the DNA-binding activity of the S. globisporus orthologue of AtrA, which was initially described as a transcriptional activator of actinorhodin biosynthesis in S. coelicolor, is inhibited by the binding of heptaene, a biosynthetic intermediate of lidamycin. Additional experiments described here show that S. globisporus AtrA binds in vivo as well as in vitro to the promoter region of the gene encoding SgcR1, one of the CSRs of lidamycin production. The feedback to the pleiotropic regulator AtrA is likely to provide a mechanism for coordinating the production of lidamycin with that of other secondary metabolites. The activity of AtrA is also regulated by actinorhodin. As AtrA is evolutionarily conserved, negative feedback of the type described here may be widespread within the streptomycetes. © 2015 John Wiley & Sons Ltd.

  2. ANALISIS TERHADAP PERLUNYA PENYESUAIAN LAPORAN KEUANGAN HISTORIS (CONVENTIONAL ACCOUNTING MENJADI BERDASARKAN TINGKAT HARGA UMUM (GENERAL PRICE LEVEL ACCOUNTING

    Directory of Open Access Journals (Sweden)

    Pwee Leng

    2002-01-01

    Full Text Available Generally, in conventional accounting, financial statements are based on the historical cost principle that assumes that prices (monetery unit are stable. Conventional accounting recognizes neither changes in the general price level nor changes in the specific price level. Consequently, if there are any changes in purchasing power such as in inflation period, the historical financial statement are not economically relevant and also income is usually overstated, and the fixed assets are usually understated. Actually, there are several methods on accounting for the effect of changing prices, such as constant accounting, current value accounting, and general price level accounting. General price level accounting will do restatement the components of financial statement to be a rupiah on a similar level of purchasing power, but without changes in accounting principles which using on conventional accounting. In practice, the controversy concerning the relevance of general price level accounting has been continuing. Pros and cons general price level accounting will be presented on this paper. Also the result of two researches concerning the influence of applied general price level accounting on the financial statement will be compared as considerations whether the general price level adjustment is necessary needed. Abstract in Bahasa Indonesia : Secara umum, dalam akuntansi konvensional, laporan keuangan disajikan berdasarkan nilai historis yang mengasumsikan bahwa harga-harga (unit moneter adalah stabil. Akuntansi konvensional tidak mengakui adanya perubahan tingkat harga umum maupun perubahan tingkat harga khusus. Sebagai konsekuensinya, jika terjadi perubahan daya beli seperti pada periode inflasi, maka laporan keuangan historis secara ekonomis tidaklah relevan. Pada periode ini pendapatan umumnya dinilai lebih tinggi sedangkan aktiva tetap dinilai lebih rendah. Sebenarnya, terdapat beberapa metode akuntansi mengenai pengaruh perubahan harga

  3. Analisis Deskriptif Soal Geometri dalam Buku Matematika Bilingual untuk Sekolah Menengah Pertama Kelas VIII Berdasarkan Kriteria International Assessment TIMSS 2007

    Directory of Open Access Journals (Sweden)

    Etik Rahayu

    2012-06-01

    Full Text Available Tujuan penelitian ini adalah untuk mendeskripsikan  domain kognitif dan aspek kognitif (required behavior soal matematika dalam Buku Matematika Bilingual untuk Sekolah Menengah Pertama (SMP Kelas VIII berdasarkan kriteria International Assessment TIMSS 2007 dan proporsinya. Metode penelitian yang digunakan adalah deskriptif kualitatif, dengan subjek penelitian adalah soal geometri dalam Buku Matematika Bilingual SMP. yang berjudul “Mathematics for Junior High School Grade VIII 1st Semester” dan “Mathematics for Junior High School Grade VIII 2nd Semester” karangan karangan M. Cholik Adinawan dan Sugijono. Pengumpulan data menggunakan metode observasi dan wawancara tentang penggunaan buku matematika bilingual yang paling banyak digunakan di kota semarang. Pedoman analisis soal berdasarkan kriteria International Assessment TIMSS 2007, dengan validasi hasil oleh ahli. Hasil penelitian menunjukkan bahwa soal yang dianalisis memuat satu hingga tujuh aspek kognitif. Sebagian besar soal memuat 4 aspek kognitif yaitu 44.04 %, diikuti soal dengan 3 aspek kognitif  yaitu 36, 42%,  soal dengan 2 aspek kognitif yaitu 14, 90%, kemudian 1,99% untuk soal dengan 1 atau 5 aspek kognitif, dan 0,33% untuk soal dengan 6 atau 7 aspek kognitif. Proporsi tinggi pada recall (28.26% dan compute (26.57%, diikuti dengan SRP (10.85%, implement (10.65%, retrieve (8.36%, recognize (6.17%, analyze (1.99%, measure (1.59%, generalize (1.09%, SNRP (1.00%, classify (0.80%, represent (0.80%, justify (0.80%, select (0.60%, model (0.30%, synthesis (0.20%. Secara keseluruhan berdasarkan International Assessment TIMSS 2007 soal yang termasuk domain knowing memiliki persentase paling tinggi (52.28%, domain knowing-applying (24.83%, domain knowing- reasoning (12.91%, dan hanya sedikit yang termasuk domain knowing-apllying-reasoning (3.97%. Serta terdapat 4 soal (1.32% yang mempunyai ketidaksesuaian penggunaan mathematics terms serta 1 soal (0

  4. KEEFEKTIFAN PEMBELAJARAN KETERAMPILAN MENULIS CERPEN DENGAN MODEL INVESTIGASI KELOMPOK DAN MODEL STAD BERDASARKAN TIPE KEPRIBADIAN PESERTA DIDIK KELAS VII

    Directory of Open Access Journals (Sweden)

    Agus Pujianto

    2015-03-01

    Full Text Available Tujuan penelitian ini adalah menguji keefektifan pembelajaran keterampilan menulis cerpen dengan model investigasi kelompok dan model STAD berdasarkan tipe kepribadian peserta didik kelas VII. Keterampilan menulis cerpen membutuhkan kreativitas dalam pelaksanaan pembelajaran. Melalui keterampilan menulis cerpen siswa dapat berkreasi untuk mengemukakan ide atau gagasan yang ingin disampaikan kepada pembaca. Ide atau gagasan juga berpengaruh terhadap hasil dalam menulis cerpen. Selain itu, pengetahuan tentang cerpen juga penting dalam pembelajaran keterampilan menulis cerpen. Siswa perlu berpikir kritis untuk memunculkan ide atau gagasan yang menarik dan untuk pemahaman mengenai unsur-unsur cerpen. Tipe kepribadian yang berbeda juga perlu membutuhkan cara pengajaran yang berbeda. Oleh karena itu, dibutuhkan model pembelajaran yang cocok. Model pembelajaran yang dipilih adalah model investigasi kelompok dan model STAD.

  5. IMPLIKASI YURIDIS PENETAPAN DIREKSI BPR BERBENTUK PT BERDASARKAN POJK NOMOR 20/POJK.03/2014 TENTANG BPR

    Directory of Open Access Journals (Sweden)

    Evina Dhana Hermansyah

    2016-04-01

    .  Dalam hal salah satu anggota Direksi BPR tidak terisi, maka BPR menetapkan pengganti anggota Direksi penggantinya kepada OJK berdasarkan POJK.POJK menetapkan jangka waktu 120 (seratus dua puluh hari kepada BPR untuk menetapkan Direksi pengganti. Nama calon anggota Direksi yang diajukan BPR kepada OJK tidak serta merta diterima oleh OJK. Calon anggota Direksi yang diajukan tersebut harus memenuhi kriteria dan persyaratan yang ditetapkan oleh OJK. Jurnal ini ditulis untukmenganalisis implikasi yang timbul terhadap BPR sehubungan dengan penetapan anggota Direksi berdasarkan POJK. Selain itu, penulisan jurnal ini juga untuk mengetahui bagaimana bentuk perbuatan hukum yang dilakukan selama susunan anggota Direksinya belum memenuhi ketentuan POJK.Dalam beberapa kasus, BPR dapat berkali-kali mengajukan permohonan calon anggota Direksinya sehingga BPR melewati batas waktu yang ditentukan dalam POJK untuk memenuhi jumlah minimum anggota Direksi. Secara normatif berdasarkan POJK, BPR dapat dikenai sanksi atas tidak terpenuhinya jumlah minimum anggota Direksi walaupun hal tersebut bukanlah mutlak kesalahan BPR.Jurnal ini disusun dengan metode penelitian yuridis normatif dengan pendekatan peraturan perundang-undangan. Berdasarkan hasil penelitian, ketentuan dalam POJK ini sehubungan dengan penetapan anggota Direksi BPR masih belum memberikan kepastian hukum bagi BPR. Ketentuan di dalam POJK terkait dengan pelaksanaan peneteapan anggota Direksi BPR  dapat menyebabkan BPR tidak memenuhi jumlah minimum anggota Direksi untuk jangka waktu yang relatif lama. BPR yang tidak memenuhi jumlah minimal anggota Direksi menyebabkan BPR tersebut tidak memiliki organ yang utuh sebagai suatu badan hukum. Kata kunci: peraturan OJK, BPR, penetapan direksi

  6. Comparison of pharmaceutical formulations: ATR-FTIR spectroscopic imaging to study drug-carrier interactions.

    Science.gov (United States)

    Ewing, Andrew V; Biggart, Gordon D; Hale, Carwyn R; Clarke, Graham S; Kazarian, Sergei G

    2015-11-10

    Attenuated total reflection (ATR) Fourier transform infrared (FTIR) spectroscopic imaging has been used in combination with UV detection to study the release of a model poorly water-soluble drug, indomethacin, when formulated with selected drug carriers. Firstly, formulations of indomethacin and nicotinamide in varying weight ratios were studied since novel tablet dosage forms containing multi-drugs are of industrial interest. The in situ spectroscopic imaging measurements of the dissolving tablets showed that as the loading of indomethacin was increased, the rate of drug release changed from one that expressed first-order drug release to one which showed zero-order drug release. Two drug release mechanisms have been identified from the recorded spectroscopic images and UV dissolution profiles. To further validate these mechanisms, specific formulations containing the model drug and two other excipients, urea and mannitol, were studied. The formulations with urea showed similar first-order release, indicative of the drug-carrier interactions. Whereas, the indomethacin/mannitol formulations showed a zero-order release curve explained by disintegration of the tablet. ATR-FTIR spectroscopic imaging provided highly chemically specific information as well as the spatial distribution of the components during the dissolution process which has demonstrated the potential of this combined analytical setup to determine the mechanisms of drug release. Copyright © 2015 Elsevier B.V. All rights reserved.

  7. Independent Review of AFC 2A, 2B, and 2E ATR Irradiation Tests

    Energy Technology Data Exchange (ETDEWEB)

    M. Cappiello; R. Hobbins; K. Penny; L. Walters

    2014-01-01

    As part of the Department of Energy Advanced Fuel Cycle program, a series of fuels development irradiation tests have been performed in the Advanced Test Reactor (ATR) at the Idaho National Laboratory. These tests are providing excellent data for advanced fuels development. The program is focused on the transmutation of higher actinides which best can be accomplished in a sodium-cooled fast reactor. Because a fast test reactor is no longer available in the US, a special test vehicle is used to achieve near-prototypic fast reactor conditions (neutron spectra and temperature) for use in ATR (a water-cooled thermal reactor). As part of the testing program, there were many successful tests of advanced fuels including metals and ceramics. Recently however, there have been three experimental campaigns using metal fuels that experienced failure during irradiation. At the request of the program, an independent review committee was convened to review the post-test analyses performed by the fuels development team, to assess the conclusions of the team for the cause of the failures, to assess the adequacy and completeness of the analyses, to identify issues that were missed, and to make recommendations for improvements in the design and operation of future tests. Although there is some difference of opinion, the review committee largely agreed with the conclusions of the fuel development team regarding the cause of the failures. For the most part, the analyses that support the conclusions are sufficient.

  8. In vivo interstitial glucose characterization and monitoring in the skin by ATR-FTIR spectroscopy

    Science.gov (United States)

    Skrebova Eikje, Natalja

    2011-03-01

    Successful development of real-time non-invasive glucose monitoring would represent a major advancement not only in the treatment and management of patients with diabetes mellitus and carbohydrate metabolism disorders, but also for understanding in those biochemical, metabolic and (patho-)physiological processes of glucose at the molecular level in vivo. Here, ATR-FTIR spectroscopy technique has been challenged not only for in vivo measurement of interstitial glucose levels, but also for their non-invasive molecular qualitative and quantitative comparative characterization in the skin tissue. The results, based on calculated mean values of determined 5 glucose-specific peaks in the glucose-related 1000-1160 cm-1 region, showed intra- and inter-subject differences in interstitial glucose activity levels with their changes at different times and doses of OGTT, while raising questions about the relationships between interstitial and blood glucose levels. In conclusion, the introduction of ATR-FTIR spectroscopy technique has opened up an access to the interstitial fluid space in the skin tissue for interstitial glucose characterization and monitoring in vivo. Though interstitial versus blood glucose monitoring has different characteristics, it can be argued that accurate and precise measurements of interstitial glucose levels may be more important clinically.

  9. Rapid detection of melamine adulteration in dairy milk by SB-ATR-Fourier transform infrared spectroscopy.

    Science.gov (United States)

    Jawaid, Sana; Talpur, Farah N; Sherazi, S T H; Nizamani, Shafi M; Khaskheli, Abid A

    2013-12-01

    Melamine is a nitrogenous chemical substance used principally as a starting material for the manufacture of synthetic resins. Due to its very high proportion of nitrogen melamine has been added illegitimately to foods and feeds to increase the measured protein content, which determines the value of the product. These issues prompted private as well as governmental laboratories to develop methods for the analysis of melamine in a wide variety of food products and ingredients. Owing to this fact present study is aimed to use single bounce attenuated total reflectance (SB-ATR) Fourier transform infrared spectroscopy (FTIR) method as an effective rapid tool for the detection and quantification of melamine in milk (liquid and powder). Partial least-squares (PLS) models were established for correlating spectral data to melamine concentration with R(2)>0.99, and RMSEC 0.370. Linear calibration curves were obtained over the calibration range of 25-0.0625%. The LOD and LOQ of the method was 0.00025% (2.5 ppm) and 0.0015% (15 ppm) respectively. Proposed SB-ATR-FTIR method requires little or no sample preparation with an assay time of 1-2 min. Copyright © 2013. Published by Elsevier Ltd.

  10. Analytical characterization of polymers used in conservation and restoration by ATR-FTIR spectroscopy.

    Science.gov (United States)

    Chércoles Asensio, Ruth; San Andrés Moya, Margarita; de la Roja, José Manuel; Gómez, Marisa

    2009-12-01

    In the last few decades many new polymers have been synthesized that are now being used in cultural heritage conservation. The physical and chemical properties and the long-term behaviors of these new polymers are determined by the chemical composition of the starting materials used in their synthesis along with the nature of the substances added to facilitate their production. The practical applications of these polymers depend on their composition and form (foam, film, sheets, pressure-sensitive adhesives, heat-seal adhesives, etc.). Some materials are used in restoration works and others for the exhibition, storage and transport of works of art. In all cases, it is absolutely necessary to know their compositions. Furthermore, many different materials that are manufactured for other objectives are also used for conservation and restoration. The technical information about the materials provided by the manufacturer is usually incomplete, so it is necessary to analytically characterize such materials. FTIR spectrometry is widely used for polymer identification, and, more recently, ATR-FTIR has been shown to give excellent results. This paper reports the ATR-FTIR analysis of samples of polymeric materials used in the conservation of artworks. These samples were examined directly in the solid material without sample preparation.

  11. Analysis code for large rupture accidents in ATR. SENHOR/FLOOD/HEATUP

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1997-08-01

    In the evaluation of thermo-hydraulic transient change, the behavior of core reflooding and the transient change of fuel temperature in the events which are classified in large rupture accidents of reactor coolant loss, that is the safety evaluation event of the ATR, the analysis codes for thermo-hydraulic transient change at the time of large rupture SENHOR, for core reflooding characteristics FLOOD and for fuel temperature HEATUP are used, respectively. The analysis code system for loss of coolant accident comprises the analysis code for thermo-hydraulic transient change at the time of medium and small ruptures LOTRAC in addition to the above three codes. Based on the changes with time lapse of reactor thermal output and steam drum pressure obtained by the SENHOR, average reflooding rate is analyzed by the FLOOD, and the time of starting the turnaround of fuel cladding tube temperature and the heat transfer rate after the turnaround are determined. Based on these data, the detailed temperature change of fuel elements is analyzed by the HEATUP, and the highest temperature and the amount of oxidation of fuel cladding tubes are determined. The SENHOR code, the FLOOD code and the HEATUP code and various models for these codes are explained. The example of evaluation and the sensitivity analysis of the ATR plant are reported in the Appendix. (K.I.)

  12. New particle formation events measured on board the ATR-42 aircraft during the EUCAARI campaign

    Directory of Open Access Journals (Sweden)

    S. Crumeyrolle

    2010-07-01

    Full Text Available Aerosol properties were studied during an intensive airborne measurement campaign that took place at Rotterdam in Netherlands in May 2008 within the framework of the European Aerosol Cloud Climate and Air Quality Interactions project (EUCAARI. The objective of this study is to illustrate seven events of new particle formation (NPF observed with two Condensation Particle Counters (CPCs operated on board the ATR-42 research aircraft in airsectors around Rotterdam, and to provide information on the spatial extent of the new particle formation phenomenon based on 1-s resolution measurements of ultra-fine particle (in the size range 3–10 nm diameter, denoted N3-10 hereafter concentrations. The results show that particle production occurred under the influence of different air mass origins, at different day times and over the North Sea as well as over the continent. The number concentration of freshly nucleated particles (N3-10 varied between 5000 and 100 000 cm−3 within the boundary layer (BL. Furthermore the vertical extension for all nucleation events observed on the ATR-42 never exceeded the upper limit of the BL. The horizontal extent of N3-10 could not be delimited due to inflexible flight plans which could not be modified to accommodate real-time results. However, the NPF events were observed over geographically large areas; typically the horizontal extension was about 100 km and larger.

  13. Centromeric DNA replication reconstitution reveals DNA loops and ATR checkpoint suppression.

    Science.gov (United States)

    Aze, Antoine; Sannino, Vincenzo; Soffientini, Paolo; Bachi, Angela; Costanzo, Vincenzo

    2016-06-01

    Half of the human genome is made up of repetitive DNA. However, mechanisms underlying replication of chromosome regions containing repetitive DNA are poorly understood. We reconstituted replication of defined human chromosome segments using bacterial artificial chromosomes in Xenopus laevis egg extract. Using this approach we characterized the chromatin assembly and replication dynamics of centromeric alpha-satellite DNA. Proteomic analysis of centromeric chromatin revealed replication-dependent enrichment of a network of DNA repair factors including the MSH2-6 complex, which was required for efficient centromeric DNA replication. However, contrary to expectations, the ATR-dependent checkpoint monitoring DNA replication fork arrest could not be activated on highly repetitive DNA due to the inability of the single-stranded DNA binding protein RPA to accumulate on chromatin. Electron microscopy of centromeric DNA and supercoil mapping revealed the presence of topoisomerase I-dependent DNA loops embedded in a protein matrix enriched for SMC2-4 proteins. This arrangement suppressed ATR signalling by preventing RPA hyper-loading, facilitating replication of centromeric DNA. These findings have important implications for our understanding of repetitive DNA metabolism and centromere organization under normal and stressful conditions.

  14. Focusing, imaging, and ATR for the Gotcha 2008 wide angle SAR collection

    Science.gov (United States)

    Gianelli, Christopher D.; Xu, Luzhou

    2013-05-01

    The following work discusses IAA's approach to tackling the wide angle, circular spotlight, synthetic aperture radar (SAR) problem from the 2008 Gotcha wide angle SAR data set, which is publicly released, with unlimited distribution. This data set comes with a MATLAB image formation routine and attendant graphical user inter- face (GUI). We begin by introducing a simple approach to focusing the collected phase history data that utilizes point targets (quadrahedral targets) present in the scene. Two SAR imaging algorithms are then presented, namely, the data-independent backprojection (BP) algorithm and the data-adaptive sparse learning via itera- tive minimization (SLIM) algorithm. These imaging approaches are compared using the 2008 Gotcha wide angle SAR data to perform both a clutter discrimination experiment, as well as an automatic target recognition (ATR) experiment. The ATR system is composed of a target pose and target center estimation preprocessing system, and includes a novel target feature for the final classification stage. Empirical results obtained by applying the focusing approach and imaging algorithms to the 2008 Gotcha wide angle SAR data set are presented and described. The results presented highlight the benefit of applying the SLIM algorithm over its data-independent counterpart, as well as the utility of the novel target feature.

  15. Mebendazole crystal forms in tablet formulations. An ATR-FTIR/chemometrics approach to polymorph assignment.

    Science.gov (United States)

    Calvo, Natalia L; Kaufman, Teodoro S; Maggio, Rubén M

    2016-04-15

    Structural polymorphism of active pharmaceutical ingredients (API) is a relevant concern for the modern pharmaceutical industry, since different polymorphic forms may display dissimilar properties, critically affecting the performance of the corresponding drug products. Mebendazole (MEB) is a widely used broad spectrum anthelmintic drug of the benzimidazole class, which exhibits structural polymorphism (Forms A-C). Form C, which displays the best pharmaceutical profile, is the recommended one for clinical use. The polymorphs of MEB were prepared and characterized by spectroscopic, calorimetric and microscopic means. The polymorphs were employed to develop a suitable chemometrics-assisted sample display model based on the first two principal components of their ATR-FTIR spectra in the 4000-600 cm(-1) region. The model was internally and externally validated employing the leave-one-out procedure and an external validation set, respectively. Its suitability for revealing the polymorphic identity of MEB in tablets was successfully assessed analyzing commercial tablets under different physical forms (whole, powdered, dried, sieved and aged). It was concluded that the ATR-FTIR/PCA (principal component analysis) association is a fast, efficient and non-destructive technique for assigning the solid-state forms of MEB in its drug products, with minimum sample pre-treatment. Copyright © 2016 Elsevier B.V. All rights reserved.

  16. In-column ATR-FTIR spectroscopy to monitor affinity chromatography purification of monoclonal antibodies

    Science.gov (United States)

    Boulet-Audet, Maxime; Kazarian, Sergei G.; Byrne, Bernadette

    2016-07-01

    In recent years many monoclonal antibodies (mAb) have entered the biotherapeutics market, offering new treatments for chronic and life-threatening diseases. Protein A resin captures monoclonal antibody (mAb) effectively, but the binding capacity decays over repeated purification cycles. On an industrial scale, replacing fouled Protein A affinity chromatography resin accounts for a large proportion of the raw material cost. Cleaning-in-place (CIP) procedures were developed to extend Protein A resin lifespan, but chromatograms cannot reliably quantify any remaining contaminants over repeated cycles. To study resin fouling in situ, we coupled affinity chromatography and Fourier transform infrared (FTIR) spectroscopy for the first time, by embedding an attenuated total reflection (ATR) sensor inside a micro-scale column while measuring the UV 280 nm and conductivity. Our approach quantified the in-column protein concentration in the resin bed and determined protein conformation. Our results show that Protein A ligand leached during CIP. We also found that host cell proteins bound to the Protein A resin even more strongly than mAbs and that typical CIP conditions do not remove all fouling contaminants. The insights derived from in-column ATR-FTIR spectroscopic monitoring could contribute to mAb purification quality assurance as well as guide the development of more effective CIP conditions to optimise resin lifespan.

  17. ATR-IR study of skin components: Lipids, proteins and water. Part I: Temperature effect

    Science.gov (United States)

    Olsztyńska-Janus, S.; Pietruszka, A.; Kiełbowicz, Z.; Czarnecki, M. A.

    2018-01-01

    In this work we report the studies of the effect of temperature on skin components, such as lipids, proteins and water. Modifications of lipids structure induced by increasing temperature (from 20 to 90 °C) have been studied using ATR-IR (Attenuated Total Reflectance Infrared) spectroscopy, which is a powerful tool for characterization of the molecular structure and properties of tissues, such as skin. Due to the small depth of penetration (0.6-5.6 μm), ATR-IR spectroscopy probes only the outermost layer of the skin, i.e. the stratum corneum (SC). The assignment of main spectral features of skin components allows for the determination of phase transitions from the temperature dependencies of band intensities [e.g. νas(CH2) and νs(CH2)]. The phase transitions were determined by using two methods: the first one was based on the first derivative of the Boltzmann function and the second one employed tangent lines of sigmoidal, aforementioned dependencies. The phase transitions in lipids were correlated with modifications of the structure of water and proteins.

  18. Classification of Edible Oils Based on ATR-FTIR Spectral Information During a Long Heating Treatment.

    Science.gov (United States)

    Mahboubifar, Marjan; Hemmateenejad, Bahram; Yousefinejad, Saeed

    2017-03-01

    Identification of oil type and its QC are important concerns in food control laboratories. Classifying edible oils that have not been used (i.e., unheated) with the aid of vibrational spectroscopy has previously been reported. However, the classification of used (i.e., heat-treated) oils needs special attention. The effect of long heating times on the classification of four kinds of edible oils (canola, corn, frying, and sunflower) based on attenuated total reflectance (ATR)-FTIR spectra was surveyed. The sampling was done on the oils during a 36 h heating process (at 170°C). The ATR-FTIR spectra of the samples were collected in the range of 4000-550 cm-1. Interval extended canonical variates analysis (ECVA), as a variable selection and classification tool, was used to determine the best intervals during the heating procedure for classification. Principal component analysis discriminate analysis, partial least-squares discriminate analysis, and ECVA were performed on the selected intervals and on the total heating time. The effect of autoscaling and mean-centering, as data preprocessing methods, was also investigated. The ECVA method resulted in the best performances for classification, with a 94% cross-validated nonerror rate (one misclassification) for the heating process times of 24-27 and 33-36 h.

  19. Pemetaan Tingkat Kekeringan Berdasarkan Parameter Indeks TVDI Data Citra Satelit Landsat-8 (Studi Kasus : Provinsi Jawa Timur

    Directory of Open Access Journals (Sweden)

    Diah Witarsih

    2017-01-01

    Full Text Available Kekeringan merupakan salah satu bencana yang sering terjadi di berbagai daerah di Indonesia. Kekeringan erat hubungannya dengan ketidakseimbangan antara kebutuhan dan pasokan air. Kekeringan datang secara berulang tiap tahunnya dan sulit dicegah. Kekeringan terjadi dengan intensitas dan luas yang berbeda-beda tiap tahunnya. Peningkatan intensitas dan luas bencana kekeringan berpengaruh besar terhadap berbagai sektor. Menurut Badan Penanggulangan Bencana Daerah (2015, beberapa wilayah di Provinsi Jawa Timur mengalami tingkat kekeringan yang sangat tinggi dan luasnya wilayah terdampak. Oleh karena itu, perlu adanya pemantauan dan prediksi tingkat kekeringan di wilayah Provinsi Jawa Timur dengan monitoring secara berkala dalam kurun waktu tertentu serta diperlukan data yang dapat digunakan secara efisien dalam monitoring tersebut. Salah satu data citra satelit yang dapat digunakan dalam monitoring kekeringan adalah citra Satelit Landsat-8. Pemantauan kekeringan dilakukan pada wilayah Provinsi Jawa Timur dalam kurun waktu 3 tahun (2013-2015 berdasarkan parameter Temperature Vegetation Dryness Index. Perhitungan parameter indeks TVDI ini didasarkan pada hubungan linier antara nilai indeks vegetasi dengan suhu permukaan tanah dan dalam perhitungan nilai suhu permukaan tanahnya menggunakan metode Split Window Algorithm. Algoritma ini memperhitungkan nilai emisivitas dari tutupan lahan dan water-vapour content dari study area. Nilai emisivitas yang digunakan dalam perhitungan Land Surface Temperature (LST adalah nilai mean dan different dari nilai Land Surface Emissivity (LSE. Hasil yang diperoleh dari penelitian ini berdasarkan perhitungan nilai TVDI yaitu adanya perbedaan nilai rata-rata kekeringan antara tahun 2013 dengan tahun 2014 yaitu mengalami penurunan sebesar 0,008. Sedangkan antara tahun 2014 dengan tahun 2015 mengalami peningkatan sebesar 0,015.

  20. Pemilihan Network Monitoring System Berdasarkan Kajian Efektifitas Sistem Informasi dengan Pendekatan AHP : Studi Kasus pada “PT.TUV”

    Directory of Open Access Journals (Sweden)

    Eko Harli

    2016-06-01

    Full Text Available Jaringan komputer adalah sesuatu yang kompleks. Kompleksitas tersebut bukan hanya sebatas banyaknya device atau perangkat, tetapi juga begitu bervariasinya sistem dan teknologi yang ada di dalamnya, serta cakupan area jaringan yang yang luas. Infrastruktur yang handal sekalipun tidak bisa dijadikan jaminan  bahwa fungsi jaringan dapat bekerja secara optimal tanpa didukung oleh monitoring atau pengelolaan yang baik. Semua kebutuhan tersebut dapat dipenuhi dengan program yang menyebut dirinya sebagai Network Monitoring System (NMS.NMS merupakan perangkat lunak yang fungsi utamanya adalah memonitor dan mengelola perangkat-perangkat jaringan dengan tujuan agar reliability dan availability terjaga dan dapat secara dini diketahui anomaly atau terputusnya jaringan tersebut. Saat ini banyak sekali perangkat lunak yang handal serta mudah dalam penggunaannya sebut saja misalnya CiscoWork, HP OpenView, dan IBM Tivoli NetView. Hanya saja perangkat lunak tersebut cukup mahal, karena memang tergolong produk commercial. Untungnya ketersediaan produk NMS tidak sebatas commercial (propriety, tetapi juga banyak alternatif lain yaitu produk-produk yang tergolong mudah digunakan. Sayangnya, kebanyakan produk susah dalam implementasi, baik dari segi instalasi maupun konfigurasi, tetapi juga keterbatasan dalam jumlah node serta jenis yang dimonitor, meliputi perangkat jaringan, server, dan aplikasi. Metode pemilihan perangkat lunak NMS berdasarkan efektifitas Sistem Informasi ini didasarkan pada metode penelitian Oyku Alanbay melalui pendekatan AHP (Analitical Hierarchy Process dengan software Expert Choice 2000. Penelitian ini diharapkan dapat menghasilkan metode yang tepat dalam menentukan perangkat lunak NMS berdasarkan efektifitas Sistem Informasi yang handal untuk digunakan sebagai tool monitoring jaringan, server, dan aplikasi untuk digunakan pada PT.TUV.   Kata kunci— Network Monitoring System, Metode Oyku Alanbay, Analitical Hierarchy Process, Expert

  1. Klasifikasi Topik Keluhan Pelanggan Berdasarkan Tweet dengan Menggunakan Penggabungan Feature Hasil Ekstraksi pada Metode Support Vector Machine (SVM

    Directory of Open Access Journals (Sweden)

    Enda Esyudha Pratama

    2015-12-01

    Full Text Available Pemanfaatan twitter sebagai layanan customer serevice perusahaan sudah mulai banyak digunakan, tak terkecuali Speedy. Mekanisme yang ada saat ini untuk proses klasifikasi bentuk dan jenis keluhan serta informasi tentang jumlah keluhan lewat twitter masih dilakukan secara manual. Belum lagi data twitter yang bersifat tidak terstruktur tentunya akan menyulitkan untuk dilakukan analisa dan penggalian informasi dari data tersebut. Berdasarkan permasalahan tersebut, penelitian ini bertujuan untuk memproses data teks dari tweet pengguna twitteryang masuk ke akun @TelkomSpeedy untuk diolah menjadi informasi. Informasi tersebut nantinya digunakan untuk klasifikasi bentuk dan jenis keluhan. Merujuk pada beberapa penelitian terkait, salah satu metode klasifikasi yang paling baik untuk digunakan adalah metode Support Vector Machine (SVM. Konsep dari SVM dapat dijelaskan secara sederhana sebagai usaha mencari hyperplane yang dapat memisahkan dataset sesuai dengan kelasnya. Kelas yang digunakan dalam penelitian kali ini berdasarkan topik keluhan pelanggan yaitu billing, pemasangan/instalasi, putus (disconnect, dan lambat. Faktor penting lainnya dalam hal klasifikasi adalah penentuan feature atau atribut kata yang akan digunakan. Metode feature selection yang digunakan pada penlitian ini adalah term frequency (TF, document frequency (DF, information gain, dan chi-square. Pada penelitian ini juga dilakukan metode penggabungan feature yang telah dihasilkan dari beberapa metode feature selection sebelumnya. Dari hasil penelitian menunjukan bahwa SVM mampu melakukan klasifikasi keluhan dengan baik, hal ini dibuktikan dengan akurasi 82,50% untuk klasifikasi bentuk keluhan dan 86,67% untuk klasifikasi jenis keluhan. Sedangkan untuk kombinasi penggunaan feature dapat meningkatkan akurasi menjadi 83,33% untuk bentuk keluhan dan 89,17% untuk jenis keluhan.   Kata Kunci—customer service, klasifikasi topik keluhan, penggabungan feature, support vector machine

  2. Citra Perfeksionisme Wanita Pada Iklan Mustika Ratu Dalam Majalah Kartini

    OpenAIRE

    Sri Wastiwi S.

    2016-01-01

    The research of woman’s perfectionism image on advertisement of the Mustika Ratu beauty products, especially focused on advertisement of Lulur Krem dan Hand & Body Bengkoang Whitening products. The analysis technique used semiotic approach, in order to looking for sign, index, symbol, and connotation in the advertisement related to the products. Finally, the research found that the woman’s perfectionism image can be explained through several aspects, including model pose, costume, and...

  3. Citra Perfeksionisme Wanita Pada Iklan Mustika Ratu Dalam Majalah Kartini

    Directory of Open Access Journals (Sweden)

    Sri Wastiwi S.

    2016-01-01

    Full Text Available The research of woman’s perfectionism image on advertisement of the Mustika Ratu beauty products, especially focused on advertisement of Lulur Krem dan Hand & Body Bengkoang Whitening products. The analysis technique used semiotic approach, in order to looking for sign, index, symbol, and connotation in the advertisement related to the products. Finally, the research found that the woman’s perfectionism image can be explained through several aspects, including model pose, costume, and narrative (text existing in the advertisement. Key words: magazine, advertisement, woman, beauty product, perfectionism.

  4. Identification and classification of textile fibres using ATR-FT-IR spectroscopy with chemometric methods.

    Science.gov (United States)

    Peets, Pilleriin; Leito, Ivo; Pelt, Jaan; Vahur, Signe

    2017-02-15

    The possibility of classification of single- and two-component textile materials using ATR-FT-IR spectra and chemometric methods, principal component analysis (PCA) and discriminant analysis, was assessed. Altogether 89 textile samples belonging to 26 different types (11 one- and 15 two-component textiles) were investigated. It was found that PCA classification using only two or three principal components (PCs) enables identifying different one- and two-component textiles, although with two important limitations: it was not always possible to distinguish between the cellulose-based fibres (cotton, linen and in some cases viscose) and it was only partly possible to distinguish between silk and wool. The statistical discriminant analysis can use as many PCs as there are sample classes and due to that can discriminate between single-component fibres, including viscose from linen and cotton as well as silk from wool. Besides that, in both of these cases, involving optical microscopy as an additional technique enabled unequivocal identification of the fibres. The possibilities of semi-quantitative analysis of mixed fibres (cotton-polyester, wool-polyester and wool-polyamide) with PCA were investigated and it was found that approximate quantitative composition is obtainable if for the mixed fibre sample a number of spectra are averaged in order to minimize the effect of structural inhomogeneity. For approximate content determination 25 spectra of selected two-component samples were registered for calibration and the averaged spectrum for each sample was computed. Due to the structural inhomogeneity of mixed textiles, obtaining accurate quantitative composition from real samples is not possible with ATR-FT-IR. The main problems with ATR-FT-IR-PCA classification are (1) difficulties in getting high quality spectra from some textiles (e.g. polyacrylic), (2) inhomogeneity of the textile fibres in the case of two-component fibres and (3) intrinsic similarity between the

  5. Assessment of XM-19 as a Substitute for AISI 348 in ATR Service

    Energy Technology Data Exchange (ETDEWEB)

    F. A. Garner; L. R. Greenwood; R. E. Mizia; C. R. Tyler

    2007-11-01

    It has been proposed that XM-19 alloy be considered as a possible replacement steel for AISI 348 in the construction of Advanced Test Reactor (ATR) capsules. AISI 348 works well, but is currently very difficult to obtain commercially. The superior and desirable mechanical properties of XM-19 alloy have been proven in non-nuclear applications, but no data are available regarding its use in radiation environments. While most 300 series alloys will meet the conditions required in ATR , it cannot be confidently assumed that XM-19 can be substituted without prior qualification in a radiation test. Compared to AISI 348, XM-19 will have an enhanced tendency for phase instabilities due to its higher levels of Ni and, especially, Si. However, transmutation of important elemental components in the highly thermalized ATR spectrum may have a very pronounced effect on its performance during irradiation. Not only will strong transmutation of Mn to Fe reduce the ductility and strength advantages provided by the higher initial Mn content of XM-19, but the extensive loss of Mn will also release from solution much of the N upon which the higher strength of XM-19 depends. In addition, the combined influence of transmutation and Inverse Kirkendall processes may lead to gas-bubble-covered grain boundaries, producing a very fragile alloy after significant irradiation has accumulated. At present, there are no radiation data available to substantiate this possible scenario. An alternate proposal is therefore advanced. Since the response of AISI 348 and 347 to radiation are expected to be relatively indistinguishable, the AISI 347 might serve as an acceptable replacement. While AISI 348 is usually chosen for nuclear service in order to reduce the overall radioactivity arising from relatively small amounts of highly transmutable elements such as cobalt, these elements have very little effect on the radiation performance of the steel. In the proposed application, however, the activity

  6. An essential function for the ATR-activation-domain (AAD of TopBP1 in mouse development and cellular senescence.

    Directory of Open Access Journals (Sweden)

    Zhong-Wei Zhou

    Full Text Available ATR activation is dependent on temporal and spatial interactions with partner proteins. In the budding yeast model, three proteins - Dpb11(TopBP1, Ddc1(Rad9 and Dna2 - all interact with and activate Mec1(ATR. Each contains an ATR activation domain (ADD that interacts directly with the Mec1(ATR:Ddc2(ATRIP complex. Any of the Dpb11(TopBP1, Ddc1(Rad9 or Dna2 ADDs is sufficient to activate Mec1(ATR in vitro. All three can also independently activate Mec1(ATR in vivo: the checkpoint is lost only when all three AADs are absent. In metazoans, only TopBP1 has been identified as a direct ATR activator. Depletion-replacement approaches suggest the TopBP1-AAD is both sufficient and necessary for ATR activation. The physiological function of the TopBP1 AAD is, however, unknown. We created a knock-in point mutation (W1147R that ablates mouse TopBP1-AAD function. TopBP1-W1147R is early embryonic lethal. To analyse TopBP1-W1147R cellular function in vivo, we silenced the wild type TopBP1 allele in heterozygous MEFs. AAD inactivation impaired cell proliferation, promoted premature senescence and compromised Chk1 signalling following UV irradiation. We also show enforced TopBP1 dimerization promotes ATR-dependent Chk1 phosphorylation. Our data suggest that, unlike the yeast models, the TopBP1-AAD is the major activator of ATR, sustaining cell proliferation and embryonic development.

  7. In Situ ATR-FTIR Study on the Selective Photo-oxidation of Cyclohexane over Anatase TiO2

    NARCIS (Netherlands)

    Almeida, A.; Moulijn, J.A.; Mul, Guido

    2008-01-01

    Anatase-catalyzed photo-oxidation of cyclohexane was analyzed by in situ ATR-FTIR spectroscopy. A set of seven UV-LEDs (375 nm), with a photon flux of 9 × 10-9 Einstein·cm-2·s-1 (at the catalyst surface) was used to initiate the photoreaction. Surface-adsorbed cyclohexanone and water are the primary

  8. Using paint to investigate fires: an ATR-IR study of the degradation of paint samples upon heating.

    Science.gov (United States)

    Roberts, Kelly; Almond, Matthew J; Bond, John W

    2013-03-01

    Fire investigation is a challenging area for the forensic investigator. The aim of this work was to use spectral changes to paint samples to estimate the temperatures to which a paint has been heated. Five paint samples (one clay paint, two car paints, one metallic paint, and one matt emulsion) have been fully characterized by a combination of attenuated total reflectance Fourier transform infrared (ATR-IR), Raman, X-ray fluorescence spectroscopy and powder X-ray diffraction. The thermal decomposition of these paints has been investigated by means of ATR-IR and thermal gravimetric analysis. Clear temperature markers are observed in the ATR-IR spectra namely: loss of ν(C = O) band, >300°C; appearance of water bands on cooling, >500°C; alterations to ν(Si-O) bands due to dehydration of silicate clays, >700°C; diminution of ν(CO3 ) and δ(CO3 ) modes of CaCO3 , >950°C. We suggest the possible use of portable ATR-IR for nondestructive, in situ analysis of paints. © 2012 American Academy of Forensic Sciences.

  9. Attenuated Total Reflection Fourier Transform Infrared (ATR-FTIR) in the discrimination of normal and oral cancer blood plasma

    Science.gov (United States)

    Pachaiappan, Rekha; Prakasarao, Aruna; Singaravelu, Ganesan

    2017-02-01

    Oral cancer is the most frequent type of cancer that occurs with 75000 to 80000 new cases reported every year in India. The carcinogens from tobacco and related products are the main cause for the oral cancer. ATR-FTIR method is label free, fast and cost-effective diagnostic method would allow for rapid diagnostic results in earlier stages by the minimal chemical changes occur in the biological metabolites available in the blood plasma. The present study reports the use of ATR-FTIR data with advanced statistical model (LDA-ANN) in the diagnosis of oral cancer from normal with better accuracy. The infrared spectra were acquired on ATR-FTIR Jasco spectrophotometer at 4 cm-1 resolution, 30 scans, in the 1800-900 cm-1 spectral range. Each sample had 5 spectra recorded from each blood plasma sample. The spectral data were routed through the multilayer perception of artificial neural network to evaluate for the statistical efficacy. Among the spectral data it was found that amide II (1486 cm-1) and lipid (1526 cm-1) affords about 90 % in the discrimination between groups using LDA. These preliminary results indicate that ATR-FTIR is useful to differentiate normal subject from oral cancer patients using blood plasma.

  10. Stability of indomethacin with relevance to the release from amorphous solid dispersions studied with ATR-FTIR spectroscopic imaging.

    Science.gov (United States)

    Ewing, Andrew V; Clarke, Graham S; Kazarian, Sergei G

    2014-08-18

    This work presents the use of attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy and spectroscopic imaging to study the stability and dissolution behaviour of amorphous solid dispersions (ASDs). ASDs are employed to improve the bioavailability of drugs which are poorly soluble in aqueous solutions. Selecting the appropriate polymeric excipients for use in pharmaceutical tablets is crucial to control drug stability and subsequent release. In this study, indomethacin was used as a model poorly-aqueous soluble drug since the amorphous-form has improved dissolution properties over its crystalline forms. ASDs of indomethacin/polyethylene glycol (PEG) and indomethacin/hydroxypropyl methylcellulose (HPMC) in a 1:3 wt ratio were compared. Firstly, ATR-FTIR spectroscopy was employed to monitor the stability of indomethacin in the ASDs over 96 h. While the indomethacin/HPMC ASD showed the ability to maintain the amorphous indomethacin form for longer periods of time, ATR-FTIR spectra revealed that indomethacin in the drug/PEG ASD crystallised to the stable γ-form, via the α-form. Secondly, ATR-FTIR spectroscopic imaging was used to study the dissolution of ASD tablets in a phosphate buffer (pH 7.5). Crystallisation of amorphous indomethacin was characterised in the spectra collected during the dissolution of the indomethacin/PEG ASD which consequently hindered release into the surrounding solution. In contrast, release of amorphous indomethacin was more effective from HPMC. Copyright © 2014 Elsevier B.V. All rights reserved.

  11. UV-induced G2 checkpoint depends on p38 MAPK and minimal activation of ATR-Chk1 pathway

    NARCIS (Netherlands)

    D.O. Warmerdam (Daniël); E.K. Brinkman (Eva); J.A. Marteijn (Jurgen); R.H. Medema (Rene); R. Kanaar (Roland); V.A.J. Smits (Veronique)

    2013-01-01

    textabstractIn response to UV light, single-stranded DNA intermediates coated with replication protein A (RPA) are generated, which trigger the ATR-Chk1 checkpoint pathway. Recruitment and/or activation of several checkpoint proteins at the damaged sites is important for the subsequent cell cycle

  12. ATR-FTIR Spectroscopy Highlights the Problem of Distinguishing Between Exophiala dermatitidis and E. phaeomuriformis Using MALDI-TOF MS

    NARCIS (Netherlands)

    Ergin, C.; Gok, Y.; Baygu, Y.; Gumral, R.; Ozhak-Baysan, B.; Dogen, A.; Ogunc, D.; Ilkit, M.; Seyedmousavi, S.

    2016-01-01

    The present study compared two chemical-based methods, namely, matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry (MALDI-TOF MS) and attenuated total reflectance-Fourier transform infrared (ATR-FTIR) spectroscopy, to understand the misidentification of Exophiala

  13. Characterization of southern yellow pine bark layers by Attenuated Total Reflectance (ATR) and Fourier Transform Infrared (FT-IR) Spectroscopy

    Science.gov (United States)

    Thomas L. Eberhardt

    2009-01-01

    The outer bark (rhytidome) of the southern yellow pines is a complex structure comprised of alternating layers of obliterated phloem and periderm tissues, with the latter comprised of three layers, those being phellem, phellogen, and phelloderm. An attenuated total reflectance (ATR) sampling accessory, coupled with a Fourier transform infrared (FTIR) spectrometer,...

  14. Measured thermal and fast neutron fluence rates for ATF-1 holders during ATR cycle 158B/159A

    Energy Technology Data Exchange (ETDEWEB)

    Smith, Larry Don [Idaho National Lab. (INL), Idaho Falls, ID (United States); Miller, David Torbet [Idaho National Lab. (INL), Idaho Falls, ID (United States); Walker, Billy Justin [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2016-11-01

    This report contains the thermal (2200 m/s) and fast (E>1MeV) neutron fluence rate data for the ATF-1 holders located in core for ATR Cycle 158B/159A which were measured by the Radiation Measurements Laboratory (RML).

  15. Characterization of poly(L-lactide/Propylene glycol) based polyurethane films using ATR-FTIR spectroscopy

    Science.gov (United States)

    Manap, Siti Munirah; Ahmad, Azizan; Anuar, Farah Hannan

    2016-11-01

    A polyurethane films consisting of PLLA, PPG and PLLA-PPG were prepared using solution casting method. Three types of polyurethane were prepared: PPLA:PMDI, PPG:PMDI and PLLA-PPG:PMDI in the presence of polymeric diphenylmethane diisocyanate (PMDI) as the coupling agent and catalyst, Sn(Oct)2. The aim of this research was to improve the physicals properties of PLLA and PPG homopolymers through copolymerization between the two polymers. The homopolymers and polyurethane films were characterized using ATR-FTIR spectroscopy. Chemical reaction between PLLA, PPG and PMDI before and after the reaction were confirmed by observing the shifting of wavenumber for the carbonyl and ether group. Other than that, the additional band for N-H after the reaction indicated that the reaction was successful.

  16. Unidirectional excitation of graphene plasmon in attenuated total reflection (ATR) configuration

    Energy Technology Data Exchange (ETDEWEB)

    Dai, Wei [Hubei University of Education, Wuhan (China). School of Physics and Mechanical and Electrical Engineering; Wu, Yue-Chao [Nanyang Technological University, Singapore (Singapore). Div. of Physics and Applied Physics; Liu, Fang-Li [Maryland Univ., College Park, MD (United States). Joint Quantum Institute

    2016-08-01

    Graphene plasmon has been attracting interests from both theoretical and experimental research due to its gate tunability and potential applications in the terahertz frequency range. Here, we propose an effective scheme to unidirectionally excite the graphene plasmon by exploiting magneto-optical materials in the famous attenuated total reflection (ATR) configuration. We show that the graphene plasmon dispersion relation in such a device is asymmetric in different exciting directions, thus making it possible to couple the incident light unidirectionally to the propagating plasmon. The split of absorption spectrum of graphene clearly indicates that under a magnetic field for one single frequency, graphene plasmon can only be excited in one direction. The possible gate tunablity of excitation direction and the further application of the proposed scheme, such as optical isolator, also are discussed.

  17. Usage of FTIR-ATR as Non-Destructive Analysis of Selected Toxic Dyes

    Science.gov (United States)

    Bartošová, Alica; Blinová, Lenka; Sirotiak, Maroš; Michalíková, Anna

    2017-06-01

    The degradation of the environment which is due to the discharge of polluting wastewater from industrial sources poses a real problem in several countries. Textile industries use large volumes of water in their operations, discharging thus large volume of wastewater into the environment, most of which is untreated. The wastewater contains a variety of chemicals from various stages of process operations, including desizing, scouring, bleaching and dyeing. The main purpose of this paper is to introduce Infrared Spectrometry with Fourier transformation as a non-destructive method for study, identifation and rapid determination of selected representatives of cationic (Methylene Blue), azo (Congo Red, Eriochrome Black T) and nitroso (Naphthol Green B) dyes. In conjunction with the ATR technique, FTIR offers a reliable detection method of dyes without extraction by other dangerous substances. Spectral interpretation of dye spectra revealed valuable information about the identification and characterization of each group of dyes.

  18. Analysis of H2O in silicate glass using attenuated total reflectance (ATR) micro-FTIR spectroscopy

    Science.gov (United States)

    Lowenstern, Jacob B.; Pitcher, Bradley W.

    2013-01-01

    We present a calibration for attenuated total reflectance (ATR) micro-FTIR for analysis of H2O in hydrous glass. A Ge ATR accessory was used to measure evanescent wave absorption by H2O within hydrous rhyolite and other standards. Absorbance at 3450 cm−1 (representing total H2O or H2Ot) and 1630 cm−1 (molecular H2O or H2Om) showed high correlation with measured H2O in the glasses as determined by transmission FTIR spectroscopy and manometry. For rhyolite, wt%H2O=245(±9)×A3450-0.22(±0.03) and wt%H2Om=235(±11)×A1630-0.20(±0.03) where A3450 and A1630 represent the ATR absorption at the relevant infrared wavelengths. The calibration permits determination of volatiles in singly polished glass samples with spot size down to ~5 μm (for H2O-rich samples) and detection limits of ~0.1 wt% H2O. Basaltic, basaltic andesite and dacitic glasses of known H2O concentrations fall along a density-adjusted calibration, indicating that ATR is relatively insensitive to glass composition, at least for calc-alkaline glasses. The following equation allows quantification of H2O in silicate glasses that range in composition from basalt to rhyolite: wt%H2O=(ω×A3450/ρ)+b where ω = 550 ± 21, b = −0.19 ± 0.03, ρ = density, in g/cm3, and A3450 is the ATR absorbance at 3450 cm−1. The ATR micro-FTIR technique is less sensitive than transmission FTIR, but requires only a singly polished sample for quantitative results, thus minimizing time for sample preparation. Compared with specular reflectance, it is more sensitive and better suited for imaging of H2O variations in heterogeneous samples such as melt inclusions. One drawback is that the technique can damage fragile samples and we therefore recommend mounting of unknowns in epoxy prior to polishing. Our calibration should hold for any Ge ATR crystals with the same incident angle (31°). Use of a different crystal type or geometry would require measurement of several H2O-bearing standards to provide a crystal

  19. HPV 5 and 8 E6 abrogate ATR activity resulting in increased persistence of UVB induced DNA damage.

    Directory of Open Access Journals (Sweden)

    Nicholas A Wallace

    Full Text Available The role of the E6 oncoprotein from high-risk members of the α human papillomavirus genus in anogenital cancer has been well established. However, far less is known about the E6 protein from the β human papillomavirus genus (β-HPVs. Some β-HPVs potentially play a role in non-melanoma skin cancer development, although they are not required for tumor maintenance. Instead, they may act as a co-factor that enhances the carcinogenic potential of UV damage. Indeed, the E6 protein from certain β-HPVs (HPV 5 and 8 promotes the degradation of p300, a histone acetyl transferase involved in UV damage repair. Here, we show that the expression of HPV 5 and 8 E6 increases thymine dimer persistence as well as the likelihood of a UVB induced double strand break (DSB. Importantly, we provide a mechanism for the increased DNA damage by showing that both extended thymine dimer persistence as well as elevated DSB levels are dependent on the ability of HPV 8 E6 to promote p300 degradation. We further demonstrate that HPV 5 and 8 E6 expression reduces the mRNA and protein levels of ATR, a PI3 kinase family member that plays a key role in UV damage signaling, but that these levels remain unperturbed in cells expressing a mutated HPV 8 E6 incapable of promoting p300 degradation. We confirm that the degradation of p300 leads to a reduction in ATR protein levels, by showing that ATR levels rebound when a p300 mutant resistant to HPV 8 mediated degradation and HPV 8 E6 are co-transfected. Conversely, we show that ATR protein levels are reduced when p300 is targeted for degradation by siRNA. Moreover, we show the reduced ATR levels in HPV 5 and 8 E6 expressing cells results in delayed ATR activation and an attenuated ability of cells to phosphorylate, and as a result accumulate, p53 in response to UVB exposure, leading to significantly reduced cell cycle arrest. In conclusion, these data demonstrate that β-HPV E6 expression can enhance the carcinogenic potential of

  20. ATR technique, an appropriate method for determining the degree of conversion in dental giomers

    Science.gov (United States)

    Prejmerean, Cristina; Prodan, Doina; Vlassa, Mihaela; Streza, Mihaela; Buruiana, Tinca; Colceriu, Loredana; Prejmerean, Vasile; Cuc, Stanca; Moldovan, Marioara

    2016-12-01

    Dental light-curing giomers were developed to combine the favourable properties of diacrylic resin composites (DRCs) and glass-ionomer cements (GICs) in a single material and to eliminate their inherent drawbacks. Giomers are characterized by their aesthetic appearance, high mechanical properties, adhesion to dental tissues as well as fluoride release and recharge abilities. The qualities of the giomers are greatly influenced by the level of conversion of the component resins. Infrared spectroscopy is one of the most largely used techniques for the determination of the degree of conversion in resin-based dental materials. However different results were obtained due to the performances of the used methods. The present work presents the determination of conversion degree in a series of dental copolymers and their corresponding giomers using transmission Fourier transform infrared spectroscopy (FTIR) and an attenuated total reflection technique (ATR) technique, respectively, the main aim being the study of the influence of the materials composition and of the light curing modes upon the achieved conversion in the cured giomers. Beautifil II commercial giomer was used as a control. A halogen lamp and a diode-blue LED lamp were used for the curing of the materials. The results showed that the composition of the resins greatly influenced the conversion. The highest conversions (up to 79%) were obtained in the case of the experimental giomers which contained the experimental Bis-GMA urethane analogue, followed by the Beautifil II giomer (61%) and experimental giomers based on commercial Bis-GMA (up to 50%), respectively. The resins light-cured by using the diode-blue LED lamp presented slightly higher conversions than the resins cured by halogen lamp. The study demonstrates the possibility to evaluate easily and reproducibly the conversion in light-curing composite materials with complex chemical composition and structure, particularly in the case of giomers by using the

  1. Rapid detection of NBOME's and other NPS on blotter papers by direct ATR-FTIR spectrometry.

    Science.gov (United States)

    Coelho Neto, José

    2015-07-01

    Blotter paper is among the most common forms of consumption of new psychotropic substances (NPS), formerly referred as designer drugs. In many cases, users are misled to believe they are taking LSD when, in fact, they are taking newer and less known drugs like the NBOMEs or other substituted phenethylamines. We report our findings in quick testing of blotter papers for illicit substances like NBOMEs and other NPS by taking ATR-FTIR spectra directly from blotters seized on the streets, without any sample preparation. Both sides (front and back) of each blotter were tested. Collected data were analyzed by single- and multi-component spectral matching and submitted to chemometric discriminant analysis. Our results showed that, on 66.7% of the cases analyzed, seized blotters contained one or more types of NBOMEs, confirming the growing presence of this novel substances on the market. Matching IR signals were detected on both or just one side of the blotters and showed variable strength. Although no quantitative analysis was made, detection of these substances by the proposed approach serves as indication of variable and possibly higher dosages per blotter when compared to LSD, which showed to be below the detection limit of the applied method. Blotters containing a mescaline-like compound, later confirmed by GC-MS and LC-MS to be MAL (methallylescaline), a substance very similar to mescaline, were detected among the samples tested. Validity of direct ATR-FTIR testing was confirmed by checking the obtained results against independent GC-MS or LC-MS results for the same cases/samples. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

  2. Cutaneous approach towards clinical and pathophysiological aspects of hyperglycemia by ATR FTIR spectroscopy

    Science.gov (United States)

    Eikje, Natalja Skrebova; Sota, Takayuki; Aizawa, Katsuo

    2007-07-01

    Attempts were made to non-invasively detect glucose-specific spectral signals in the skin by ATR-FTIR spectroscopy. In vivo spectra were collected from the inner wrists of healthy, prediabetes and diabetes subjects in the 750-4000 cm -1 region, with a closer assessment of the glucose-related region between 1000 and 1180 cm -1. Spectra in vivo showed glucose-specific peaks at 1030, 1080, 1118 and 1151 cm -1, as a variety of glucose solutions are found in vitro. Based on the differences of intensities at 1030 and 1118 cm -1 two spectral patterns were seen: I 1118 > I 1030 for a diabetes and I 1030> I 1118 for non-diabetes subjects. The peak at 1030 cm -1 was used to assess glucose concentrations in the skin due to its good correlation with glucose concentrations in vitro. Calculated mean values of the peak at 1030 cm -1 showed evidence of correlation with blood glucose levels when grouped as = 200 mg/dL, though there was no constant correlation between them when compared before/after OGTT or at the fasting/postprandial states. Absorbances at 1030 cm -1 were not only increased in a dose-dependent manner in a diabetes patient, but were also generally higher than in non-diabetes subjects at 30 min OGTT assessment. Also we could monitor absorbances at 1030 cm -1 and determine their changes in the skin tissue at different times of OGTT. We assume that our approach to in vivo measurement and monitoring of glucose concentrations at 1030 cm -1 may be one of the indicators to assess glucose activity level and its changes in the skin tissue, and has further implications in the study of clinical and pathophysiological aspects of hyperglycemia in diabetes and non-diabetes subjects by ATR-FTIR spectroscopy.

  3. Rapid classification and quantification of cocaine in seized powders with ATR-FTIR and chemometrics.

    Science.gov (United States)

    Eliaerts, Joy; Dardenne, Pierre; Meert, Natalie; Van Durme, Filip; Samyn, Nele; Janssens, Koen; De Wael, Karolien

    2017-10-01

    Traditionally, fast screening for the presence of cocaine in unknown powders is performed by means of colour tests. The major drawbacks of these tests are subjective colour evaluation depending on the operator ('50 shades of blue') and a lack of selectivity. An alternative fast screening technique is Fourier Transform InfraRed (FTIR) spectrometry. This technique provides spectra that are difficult to interpret without specialized expertise and shows a lack of sensitivity for the detection of cocaine in mixtures. To overcome these limitations, a portable FTIR spectrometer using Attenuated Total Reflectance (ATR) sampling was combined with a multivariate technique, called Support Vector Machines (SVM). Representative street drug powders (n = 482), seized during the period January 2013 to July 2015, and reference powders (n = 33) were used to build and validate a classification model (n = 515) and a quantification model (n = 378). Both models were compared with the conventional chromatographic techniques. The SVM classification model showed a high sensitivity, specificity, and efficiency (99%). The SVM quantification model determined cocaine content with a root mean squared error of prediction (RMSEP) of 6% calculated over a wide working range from 4 to 99 w%. In conclusion, the developed models resulted in a clear output (cocaine detected or cocaine not detected) and a reliable estimation of the cocaine content in a wide variety of mixtures. The ATR-FTIR technique combined with SVM is a straightforward, user-friendly, and fast approach for routine classification and quantification of cocaine in seized powders. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

  4. Identifikasi Carrier Bakteri Streptococcus β hemolyticus Group A pada Murid SD Negeri 13 Padang Berdasarkan Perbedaan Umur dan Jenis Kelamin

    Directory of Open Access Journals (Sweden)

    Fadhila Aini

    2016-01-01

    Full Text Available AbstrakStreptococcus β hemolyticus Grup A atau yang disebut juga Streptococcus pyogenes merupakan salah satu bakteri patogen yang banyak menginfeksi manusia.Bakteri ini dapat ditemukan sebagai carrier di saluran pernafasan terutama pada anak-anak, tidak menimbulkan penyakit tetapi berisiko untuk menyebarkan penyakit. Tujuan penelitian ini adalah menentukan jumlah carrier  bakteri Streptococcus β hemolyticus Grup A pada murid berdasarkan perbedaan umur dan jenis kelamin. Jenis penelitian ini adalah deskriptif cross-sectional dengan menggunakan sampel seluruh murid SD Negeri 13 Padang. Hasil penelitian adalah didapatkan 2 orang murid yang menderita carrier, yaitu pada kelompok usia>8-9 tahun dan >11 tahun. Berdasarkan jenis kelamin yang terdiri dari 54 orang laki-laki dan 50 orang perempuan, didapatkan 2 orang carrier yaitu hanya pada anak laki-laki. Hasil penelitian menunjukkan bahwa carrier bakteri Streptococcus β hemolyticus Group  A terdapat pada anak usia tersebut karena masih kurangnya pengetahuan tentang kebersihan. Carrier yang ditemukan hanya pada anak laki-laki kemungkinan disebabkan mereka lebih sering bermain di luar rumah dan terpapar dengan berbagai bakteri patogen dan kurang memperhatikan kebersihan diri.Kata kunci: carrier, streptococcus β hemolyticus grup A, umur, jenis kelamin AbstractGroup A Streptococcus β hemolyticus or also called Streptococcus pyogenes is one of many pathogenic bacteria that infect humans. These bacteria can be found as a carrier in the respiratory tract especially in children, do not cause disease but can be a risk for spreading the disease. This objective of this study was to determine the amount of the carrier of bacteria group A Streptococcus β hemolyticus based on age and gender differences. This research is a descriptive cross - sectional study using a sample of all students of SD Negeri 13 Padang. Based on the age of 104 students found that students who suffer 2 carrier, which is in the age

  5. Segmentasi Citra menggunakan Support Vector Machine (SVM dan Ellipsoid Region Search Strategy (ERSS Arimoto Entropy berdasarkan Ciri Warna dan Tekstur

    Directory of Open Access Journals (Sweden)

    Lukman Hakim

    2016-02-01

    Full Text Available Abstrak Segmentasi citra merupakan suatu metode penting dalam pengolahan citra digital yang bertujuan membagi citra menjadi beberapa region yang homogen berdasarkan kriteria kemiripan tertentu. Salah satu syarat utama yang harus dimiliki suatu metode segmentasi citra yaitu menghasilkan citra boundary yang optimal.Untuk memenuhi syarat tersebut suatu metode segmentasi membutuhkan suatu klasifikasi piksel citra yang dapat memisahkan piksel secara linier dan non-linear. Pada penelitian ini, penulis mengusulkan metode segmentasi citra menggunakan SVM dan entropi Arimoto berbasis ERSS sehingga tahan terhadap derau dan mempunyai kompleksitas yang rendah untuk menghasilkan citra boundary yang optimal. Pertama, ekstraksi ciri warna dengan local homogeneity dan ciri tekstur dengan menggunakan Gray Level Co-occurrence Matrix (GLCM yang menghasilkan beberapa fitur. Kedua, pelabelan dengan Arimoto berbasis ERSS yang digunakan sebagai kelas dalam klasifikasi. Ketiga, hasil ekstraksi fitur dan training kemudian diklasifikasi berdasarkan label dengan SVM yang telah di-training. Dari percobaan yang dilakukan menunjukkan hasil segmentasi kurang optimal dengan akurasi 69 %. Reduksi fitur perlu dilakukan untuk menghasilkan citra yang tersegmentasi dengan baik. Kata kunci: segmentasi citra, support vector machine, ERSS Arimoto Entropy, ekstraksi ciri. Abstract Image segmentation is an important tool in image processing that divides an image into homogeneous regions based on certain similarity criteria, which ideally should be meaning-full for a certain purpose. Optimal boundary is one of the main criteria that an image segmentation method should has. A classification method that can partitions pixel linearly or non-linearly is needed by an image segmentation method. We propose a color image segmentation using Support Vector Machine (SVM classification and ERSS Arimoto entropy thresholding to get optimal boundary of segmented image that noise-free and low complexity

  6. ANALISIS KEMAMPUAN PEMECAHAN MASALAH MATEMATIKA SOAL SETIPE TIMSS BERDASARKAN GAYA KOGNITIF SISWA PADA PEMBELAJARAN MODEL PROBLEM BASED LEARNING

    Directory of Open Access Journals (Sweden)

    Lia Vendiagrys

    2015-08-01

    Full Text Available Gaya kognitif memiliki peran yang sangat penting dalam proses pemecahan masalah. Penelitian ini bertujuan untuk memperoleh deskripsi profil kemampuan pemecahan masalah  matematika soal setipe TIMSS pada siswa SMP kelas VIII dengan gaya kognitif FI dan FD. Penelitian ini merupakan penelitian deskriptif. Subjek penelitian ini adalah tiga siswa FI dan tiga siswa FD kelas VIII SMP 3 Kudus. Teknik pengumpulan data adalah dokumen, tes, dan wawancara. Analisis data meliputi reduksi, penyajian data,dan  penarikan kesimpulan. Hasil penelitian sebagai berikut (1 untuk subjek FI dalam  menyelesaikan masalah memiliki profil:  dapat memahami pernyataan verbal dari masalah dan mengubahnya ke dalam kalimat matematika, lebih analitis dalam menerima informasi,  dapat memperluas hasil pemecahan masalah dan pemikiran matematis, memberikan suatu pembenaran berdasarkan pada hasil,dan memecahkan masalah dalam konteks kehidupan nyata,  memperoleh jawaban yang benar, (2  Untuk subjek FD dalam menyelesaikan masalah memiliki profil: dapat memahami pernyataan verbal dari masalah,tetapi tidak dapat mengubahnya ke dalam kalimat matematika,  lebih global dalam menerima informasi, mudah terpengaruh manipulasi unsur pengecoh karena memandang secara global, tidak dapat memperluas hasil pemecahan masalah, memberikan suatu pembenaran berdasarkan pada hasil,dan memecahkan masalah dalam konteks kehidupan nyata, sering tidak dapat memperoleh jawaban yang benar.Cognitive style has a very important role in the process of problem solving. This study aimed to obtain a profile of mathematical problem solving ability student with FI and FD cognitive style. This research is a descriptive qualitative approach. Subjects in this study were students of class VIII SMP 3 Kudus, ie three students FI and FD. Data collection techniques is a document, test, interview. Data analysis included reduction, presentation, and conclusion. The results of the study show that subject FI in resolving

  7. Identifikasi Daerah Sesar Dan Intrusi Berdasarkan Perbandingan Antara Filter( Rtp,upward,downward, Dan Aniltic Signal ) Data Mapping Regional Magnetik Daerah Garut, Jawa Barat

    OpenAIRE

    Fashihullisan, ALathief; Susilo, Adi; Pajrin, Agus

    2014-01-01

    Struktur permukaan dapat diperkirakan berdasarkan anomali magnet yang berasal dari materi-materi di bawahnya. Data tersebut dipetakan dalam profil pemetaan intensitas magnet total. Selanjutnya dibandingkan dengan filter-filter data magnet, diantaranya upward continuation, downward continuation, reduce to magnetic pole dan analytic signal untuk diketahui dengan pasti posisinya. Pola anomali magnet berupa nilai anomaly tinggi dan rendah yang lebar mencirikan struktur patahan/sesar. Sedangkan ni...

  8. Defining the Contribution of MC1R Physiological Ligands to ATR Phosphorylation at Ser435, a Predictor of DNA Repair in Melanocytes.

    Science.gov (United States)

    Jarrett, Stuart G; Wolf Horrell, Erin M; Boulanger, Mary C; D'Orazio, John A

    2015-12-01

    The melanocortin 1 receptor (MC1R), a GS-coupled receptor that signals through cAMP and protein kinase A (PKA), regulates pigmentation, adaptive tanning, and melanoma resistance. MC1R-cAMP signaling promotes PKA-mediated phosphorylation of ataxia telangiectasia and rad3-related (ATR) at Ser435 (ATR-pS435), a modification that enhances nucleotide excision repair (NER) by facilitating recruitment of the XPA protein to sites of UV-induced DNA damage. High-throughput methods were developed to quantify ATR-pS435, measure XPA-photodamage interactions, and assess NER function. We report that melanocyte-stimulating hormone (α-MSH) or ACTH induce ATR-pS435, enhance XPA's association with UV-damaged DNA and optimize melanocytic NER. In contrast, MC1R antagonists agouti signaling protein (ASIP) or human β-defensin 3 (HBD3) interfere with ATR-pS435 generation, impair the XPA-DNA interaction, and reduce DNA repair. Although ASIP and HBD3 each blocked α-MSH-mediated induction of the signaling pathway, only ASIP depleted basal ATR-pS435. Our findings confirm that ASIP diminishes agonist-independent MC1R basal signaling whereas HBD3 is a neutral MC1R antagonist that blocks activation by melanocortins. Furthermore, our data suggest that ATR-pS435 may be a useful biomarker for the DNA repair-deficient MC1R phenotype.

  9. Differential Processing of Low and High LET Radiation Induced DNA Damage: Investigation of Switch from ATM to ATR Signaling

    Science.gov (United States)

    Saha, Janapriya; Wang, Minli; Hada, Megumi; Cucinotta, Francis A.

    2011-01-01

    The members of the phosphatidylinositol kinase-like kinase family of proteins namely ataxia-telangiectasia mutated (ATM) and ATM- and Rad3-related (ATR) are directly responsible for the maintenance of genomic integrity by mounting DDR through signaling and facilitating the recruitment of repair factors at the sites of DNA damage along with coordinating the deployment of cell cycle checkpoints to permit repair by phosphorylating Checkpoint kinase Chk1, Chk2 and p53. High LET radiation from GCR (Galactic Cosmic Rays) consisting mainly of protons and high energy and charged (HZE) particles from SPE (Solar Particle Event) pose a major health risk for astronauts on their space flight missions. The determination of these risks and the design of potential safeguards require sound knowledge of the biological consequences of lesion induction and the capability of the cells to counter them. We here strive to determine the coordination of ATM and ATR kinases at the break sites directly affecting checkpoint signaling and DNA repair and whether differential processing of breaks induced by low and high LET radiation leads to possible augmentation of swap of these damage sensors at the sites of DNA damage. Exposure of cells to IR triggers rapid autophosphorylation of serine-1981 that causes dimer dissociation and initiates monomer formation of ATM. ATM kinase activity depends on the disruption of the dimer, which allows access and phosphorylation of downstream ATM substrates like Chk2. Evidence suggests that ATM is activated by the alterations in higher-order chromatin structure although direct binding of ATM to DSB ends may be a crucial step in its activation. On the other hand, in case of ATR, RPA (replication protein A)-coated ssDNA (single-stranded DNA) generated as a result of stalled DNA replication or during processing of chromosomal lesions is crucial for the localization of ATR to sites of DNA damage in association with ATR-interacting protein (ATRIP). Although the

  10. ANALISIS KARAKTERISTIK UNJUK KERJA SISTEM PENDINGIN (AIR CONDITIONING YANG MENGGUNAKAN FREON R-22 BERDASARKAN PADA VARIASI PUTARAN KIPAS PENDINGIN KONDENSOR

    Directory of Open Access Journals (Sweden)

    Heroe Poernomo

    2015-02-01

    Full Text Available Pengkondisian udara pada ruangan berfungsi untuk mengatur kelembaban, pemanasan dan pendinginan udara di dalam ruangan tersebut. Pengkondisian ini bertujuan memberikan kenyamanan, sehingga mampu mengurangi keletihan. Untuk mendapatkan suhu udara yang sesuai dengan yang diinginkan banyak alternative yang dapat diterapkan, diantaranya adalah dengan menaikkan koefisien perpindahan kalor kondensasi dan dengan menambahkan kecepatan udara pendingin pada kondensor sehingga akan diperoleh harga koefisien prestasi yang lebih besar. Metode yang digunakan dalam penelitian ini adalah percobaan dengan menggunakan peralatan dari mesin refrigerasi sistem pendingin udara di laboratorium Fluida, Data-data yang dicatat yaitu suhu, tekanan dan perbedaan tekanan di kompresor. Untuk membuat variasi putaran poros fan kondensor dilakukan dengan melakukan beberapa perubahan frequensi motor listrik yang menggerakkannya. Variasi putaran motor listrik fan kondensor yang digunakan adalah 50 rpm sampai dengan 150 rpm. Data hasil pencatatan berupa tekanan dan temperatur selanjutnya diplot pada diagram P-h untuk refrigeran R-22. Berdasarkan pembahasan dan perhitungan data yang diperoleh, dapat ditarik beberapa kesimpulan karakteristik dan unjuk kerja sistem pendingin, Semakin besar laju aliran udara untuk mendinginkan kondensor maka besarnya koefisien prestasi semakin meningkat. Karena laju pelepasan kalor yang besar akan berimbas pada temperature kondensor yang semakin rendah, sehingga dapat mencapai temperatur yang lebih rendah lagi pada keluaran evaporator. Jadi kerja kompresor lebih ringan pada variasi laju pelepasan kalor yang paling besar.

  11. Keragaman suweg (Amorphophallus campanulatus di wilayah eks karesidenan Surakarta berdasarkan karakter morfologi, anatomi dan pola pita isozim

    Directory of Open Access Journals (Sweden)

    MONARITA PERMATASARI

    2014-05-01

    Full Text Available Permatasari, Pitoyo A, Suratman. 2014. Keragaman suweg (Amorphophallus campanulatus di wilayah eks karesidenan Surakarta berdasarkan karakter morfologi, anatomi dan pola pita isozim. Bioteknologi 11: 11-18. The aims of this research were to find out the diversity and relationship among elephant yam in Surakarta region based on variation of morphological, anatomical and isozyme banding patterns characters. Total 20 samples were taken using random purposive sampling technique in different altitude of 7 districts. Morphological, anatomical and isozyme banding pattern data were analyzed descriptively. The steady data of quantitative characteristic from morphological, anatomical and isozyme banding pattern of binary data was analyzed using an Index of Similarity (IS and computed by the program Numerical Taxonomy and Multivariate Analysis System (NTSYS version 2.10. The result showed that the elephant yam in Surakarta region were diverse based on morphological, anatomical and isozyme banding pattern, especially in ratio and color of petiolus; tuber ratio; index of stomatal; thick epidermis; thick mesophyll; term and ratio of palisade; term rafida; 4 peroxidase and 5 esterase isozyme banding pattern. Analysis of relationship of elephant yam based on morphological, anatomical and isozyme band pattern characters showed the similarity coefficient of 64,85% contained two major group. The first group consist of Boyolali 1, Boyolali 3, Boyolali 4, Wonogiri 4, Wonogiri 2, Karanganyar 1, Karanganyar 2, Karanganyar 3, Sragen 2, while the other samples were separated from this group.

  12. PENGAWASAN, EVALUASI, DAN PENILAIAN SISTEM PENGENDALIAN INTERNAL TERKAIT BILLING SYSTEM PADA RSUD UNGARAN BERDASARKAN KERANGKA KERJA COBIT 5 (MEA02

    Directory of Open Access Journals (Sweden)

    Marthania Firmadita

    2016-10-01

    Full Text Available RSUD Ungaran Kabupaten Semarang ini memiliki sejumlah layanan kesehatan yang melayani masyarakat umum, layanan kesehatan dinamakan dengan Billing System yang dibuat dengan tujuan mempercepat pelayanan kesehatan terhadap pelanggan. Melihat banyaknya kebutuhan setiap bagian yang terkait sehingga semakin besar pengelolaan data yang ada menyebabkan keterlambatan sistem dan kesalahan dalam pengelolaan data. Berbagai upaya dilakukan untuk memberikan layanan operasional terbaik dan meminimalisasi kesalahan. Salah satunya dilakukan penilaian kinerja pengelolaan layanan yang diberikan, penilaian kinerja ini merupakan pengendalian kontrol internal secara sistematik, untuk melihat tingkat kesesuaian dan keefektifan implementasi layanan. Dari hasil observasi, wawancara, dan kuesioner berdasarkan COBIT 5 dihasilkan level kapabilitas tata kelola proses pengawasan, evaluasi, dan penilaian pengendalian internal terkait billing system (MEA02 pada RSUD Ungaran saat ini adalah Level 2 dengan status Largely Achieved sebesar 71,56% setara 2,71 dimana Level 1 dan Level 0 tercapai Fully Achieved.Hal ini menunjukan sudah dilakukan komunikasi perencanaan kedepan dari hasil penilaian kinerja tetapi belum diimplementasikan. Dan untuk mencapai level kapabilitas, RSUD Ungaran dapat melakukan strategi perbaikan yang dilakukan secara bertahap dari proses atribut level 1 sampai 3. Kata Kunci: Analisis Tata Kelola TI, Sistem Informasi Kesehatan, COBIT 5, Analisis Tingkat Kapabilitas, Analisis Kesenjangan

  13. HUBUNGAN KEKERABATAN BEBERAPA POPULASI KERANG HIJAU (Perna viridis DI INDONESIA BERDASARKAN SEKUEN CYTROCROME B mtDNA

    Directory of Open Access Journals (Sweden)

    Achmad Sudradjat

    2016-11-01

    Full Text Available Penelitian ini dilakukan untuk mengetahui hubungan kekerabatan stok kerang hijau (Perna viridis di beberapa perairan Indonesia sebagai informasi dasar bagi program pemuliaan. Sampel kerang hijau yang berasal dari populasi alam perairan Tanjung Kait, Kamal, Panimbang, Cirebon, Pasuruan, Kenjeran, dan Pangkep diambil secara acak. Amplifikasi PCR dan sekuensing mitokondria daerah cytochrome B adalah HCO (F: 5’-TAA ACT TCA GGG TGA CCA AAA AAT CA-3’ (26 bp dan LCO (R: 5’-GGT CAA CAA ATC ATA AAG ATA TTG G-3’ (25 bp. Sekuen DNA yang diperoleh digunakan untuk analisis homologi, analisis genetic distance dan analisis kekerabatan. Hasil analisis homologi susunan nukleotida berdasarkan BLAST-N terhadap sekuen mtDNA Perna viridis yang tersimpan di Genebank menunjukkan similaritas 97%. Hasil analisis didapatkan jarak genetik yang terdekat adalah populasi Tanjung Kait dengan Kenjeran sedangkan jarak genetik terjauh adalah populasi Cirebon dengan Kamal. Hubungan kekerabatan yang ditunjukkan dengan dendrogram diperoleh 2 kelompok yaitu 6 populasi membentuk satu kelompok dan populasi Cirebon membentuk kluster tersendiri. Sekuens tersebut mungkin dapat digunakan sebagai penanda dalam program breeding kerang hijau di Indonesia

  14. Penanganan Teror Bom Thamrin Ditinjau Berdasarkan Skep Kapolri Nomor: 172 Tahun 2014 tentang Penanganan Tempat Kejadian Perkara (PTKP Bom

    Directory of Open Access Journals (Sweden)

    Dedy Tabrani

    2016-11-01

    Full Text Available Abstrak Fenomena ISIS pasca Al-Qaeda telah memberikan harapan baru dan semangat baru kelompok radikal Islam di Indonesia. Salah satu aksi terorisme yang dilakukan oleh anggota ISIS di Indonesia adalah terror Bom Thamrin pada 14 Januari 2016 dengan pola dan modus berupa bom dan penembakan. Polri sebagai leading sector penanganan terorisme, telah merumuskan beberapa peraturan mengenai penanganan terorisme, misalnya, Keputusan Kepala Kepolisian Negara Republik Indonesia Nomor: 172 Tahun 2014 tentang Penanganan Tempat Kejadian Perkara Bom (PTKP. Keputusan tersebut menjadi landasan kepolisian dalam penanganan kasus teror di lapangan. Untuk itu, penelitian ini akan mengungkap sejauh mana penanganan terror bom Thamrin ditinjau berdasarkan Skep Kapolri Nomor: 172 Tahun 2014 Tentang Penanganan Tempat Kejadian Perkara Bom (PTKP. Kata kunci: terorisme, Teror Thamrin, ISIS, Polri   ISIS phenomena after Al-Qaeda have given new hope and spirit of Islamic radicalism groups in Indonesia. One of terrorism action by ISIS members was Thamrin bombing terror on January 14, 2016 with pattern and modus of bombings and shootings. Indonesian National Police as a leading sector in handling terrorism has formulated rules regarding terrorism handling, such as the Decree of the Indonesian National Police Chief (Perkap No. 172, 2014 on the Handling of the Crime Scene (PTKP of bomb. This decree becomes the base of police on handling terror scene. Therefore, this research can reveal how far the handling of Thamrin terror bombing based on Skep No. 173, 2014. Keywords: Terrorism, Terror of Thamrin, ISIS, Indonesian National Police

  15. GAMBARAN RISIKO TROMBOSIS VENA PROFUNDA (TVP PADA SALES PROMOTION GIRL (SPG BERDASARKAN KRITERIA WELLS DI KOTA DENPASAR

    Directory of Open Access Journals (Sweden)

    Shelly Silvia Bintang

    2015-01-01

    Full Text Available Pekerjaan sebagai sales promotion girl (SPG menuntut berdiri dalam posisi statis dalam waktu kerja yang cukup lama. Dalam sebuah jurnal kesehatan masyarakat tahun 2013 mendapatkan hasil semakin lama SPG bekerja maka semakin lama juga durasi mereka memakai sepatu hak tinggi semakin besar risiko untuk mengalami gangguan kesehatan yang disebabkan sepatu hak tinggi. Gangguan dari aliran darah atau trombosis vena profunda (TVP merupakan dampak yang ditimbulkan. Tujuan dari penelitian ini untuk mengetahui angka tinggi pemakaian sepatu hak tinggi, angka pemakaian stocking dan gambaran SPG di Kota Denpasar yang memiliki risiko rendah, menengah dan tinggi mengalami TVP. Penelitian ini menggunakan metode deskriptif potong lintang. Subyek penelitian ini adalah 62 pegawai SPG yang bekerja di swalayan di Kota Denpasar. Skor kriteria Wells didapatkan untuk mengetahui gambaran risiko probabilitas TVP. Hasil gambaran risiko TVP pada SPG di Kota Denpasar berdasarkan kriteria Wells didapatkan 30 orang pekerja (48,38% menunjukan risiko ringan, dan 30 orang pekerja lainnya (48,38% menunjukan risiko menengah menderita TVP, sedangkan 2 orang pekerja (3,24% menunjukan risiko tinggi. Sebagian besar pegawai SPG di kota Denpasar memiliki risiko rendah dan sedang probabilitas TVP.

  16. PEMODELAN STRATEGI PEMASARAN PRODUK BARANG JADI TEKSTIL BERDASARKAN PENDEKATAN SIMULASI SISTEM DINAMIK PADA INDUSTRI KECIL MENENGAH DI KOTA BOGOR

    Directory of Open Access Journals (Sweden)

    Nunung Nurhasanah

    2012-10-01

    Full Text Available Pertumbuhan Industri Kecil Menengah (IKM hingga saat ini terus meningkat, berdasarkan data dari Departemen Perindustrian (2004 dinyatakan jumlah IKM pada tahun 2002 adalah 2,55 juta unit usaha dan pada tahun 2003 meningkat menjadi 3 juta unit usaha. Berarti telah terjadi laju pertumbuhan IKM sebesar 15% pertahun. Sehingga hal ini menunjukkan tingginya persaingan yang terjadi di antara IKM. Kemampuan IKM dalam persaingan di dunia industri tidak terlepas dari  kemampuan penerapan strategi pemasaran yang digunakan. Strategi pemasaran  merupakan salah satu kunci keberhasilan IKM dalam meningkatkan jumlah penjualan produknya. Berdasarkan data dari Departemen Perindustrian (2004 diketahui bahwa IKM produk  barang jadi tekstil memiliki laju pertumbuhan  ekspor tertinggi, yaitu sebesar 23,49% pertahun. Hal ini menunjukkan bahwa IKM  produk barang jadi tekstil merupakan suatu industri yang potensial untuk terus dijaga keberlangsungan hidupnya. Akan tetapi yang menjadi permasalahan IKM produk  barang jadi tekstil adalah lemahnya kekontinyuan keberadaan industri tersebut.  Beberapa industri yang muncul tidak mempunyai siklus hidup bisnis yang lama, salah satu faktor penyebabnya adalah ketidak mampuan IKM dalam meningkatkan  penjualan karena lemahnya strategi pemasaran. Berdasarkan hal-hal tersebut diatas, maka penelitian tentang pemodelan strategi pemasaran untuk IKM sangat penting untuk dilakukan. Penelitian  ini bertujuan untuk  menentukan kebijakan  strategi  pemasaran produk barang jadi tekstil Industri Kecil Menengah di Kota Bogor  berdasarkan  pendekatan simulasi sistem dinamik yang dibantu oleh perangkat lunak Power Simulation. Pengolahan data dilakukan dengan memetakan posisi IKM  dengan menggunakan pendekatan Matriks BCG (Boston Consulting Group dimana posisi IKM sebagai obyek penelitian tersebut akan terpetakan kedalam posisi   Bintang (Star, Sapi Perah (Cash  Cow, Tanda tanya (Question Mark dan Anjing  (Dogs. Sebelumnya

  17. Variability and robustness of scatterers in HRR/ISAR ground target data and its influence on the ATR performance

    Science.gov (United States)

    Schumacher, R.; Schimpf, H.; Schiller, J.

    2011-06-01

    The most challenging problem of Automatic Target Recognition (ATR) is the extraction of robust and independent target features which describe the target unambiguously. These features have to be robust and invariant in different senses: in time, between aspect views (azimuth and elevation angle), between target motion (translation and rotation) and between different target variants. Especially for ground moving targets in military applications an irregular target motion is typical, so that a strong variation of the backscattered radar signal with azimuth and elevation angle makes the extraction of stable and robust features most difficult. For ATR based on High Range Resolution (HRR) profiles and / or Inverse Synthetic Aperture Radar (ISAR) images it is crucial that the reference dataset consists of stable and robust features, which, among others, will depend on the target aspect and depression angle amongst others. Here it is important to find an adequate data grid for an efficient data coverage in the reference dataset for ATR. In this paper the variability of the backscattered radar signals of target scattering centers is analyzed for different HRR profiles and ISAR images from measured turntable datasets of ground targets under controlled conditions. Especially the dependency of the features on the elevation angle is analyzed regarding to the ATR of large strip SAR data with a large range of depression angles by using available (I)SAR datasets as reference. In this work the robustness of these scattering centers is analyzed by extracting their amplitude, phase and position. Therefore turntable measurements under controlled conditions were performed targeting an artificial military reference object called STANDCAM. Measures referring to variability, similarity, robustness and separability regarding the scattering centers are defined. The dependency of the scattering behaviour with respect to azimuth and elevation variations is analyzed. Additionally generic types

  18. Status Report on the Fabrication of Fuel Cladding Chemical Interaction Test Articles for ATR Irradiations

    Energy Technology Data Exchange (ETDEWEB)

    Field, Kevin G. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Howard, Richard H. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

    2015-09-28

    FeCrAl alloys are a promising new class of alloys for light water reactor (LWR) applications due to their superior oxidation and corrosion resistance in high temperature environments. The current R&D efforts have focused on the alloy composition and processing routes to generate nuclear grade FeCrAl alloys with optimized properties for enhanced accident tolerance while maintaining properties needed for normal operation conditions. Therefore, the composition and processing routes must be optimized to maintain the high temperature steam oxidation (typically achieved by increasing the Cr and Al content) while still exhibiting properties conducive to normal operation in a LWR (such as radiation tolerance where reducing Cr content is favorable). Within this balancing act is the addition of understanding the influence on composition and processing routes on the FeCrAl alloys for fuel-cladding chemical interactions (FCCI). Currently, limited knowledge exists on FCCI for the FeCrAl-UO2 clad-fuel system. To overcome the knowledge gaps on the FCCI for the FeCrAl-UO2 clad-fuel system a series of fueled irradiation tests have been developed for irradiation in the Advanced Test Reactor (ATR) housed at the Idaho National Laboratory (INL). The first series of tests has already been reported. These tests used miniaturized 17x17 PWR fuel geometry rodlets of second-generation FeCrAl alloys fueled with industrial Westinghouse UO2 fuel. These rodlets were encapsulated within a stainless steel housing.To provide high fidelity experiments and more robust testing, a new series of rodlets have been developed deemed the Accident Tolerant Fuel Experiment #1 Oak Ridge National Laboratory FCCI test (ATF-1 ORNL FCCI). The main driving factor, which is discussed in detail, was to provide a radiation environment where prototypical fuel-clad interface temperatures are met while still maintaining constant contact between industrial fuel and the candidate cladding alloys

  19. ATR-FTIR Spectroscopy on intact dried leaves of sage (Salvia officinalis L. – chemotaxonomic discrimination and essential oil composition

    Directory of Open Access Journals (Sweden)

    Gudi, Gennadi

    2016-07-01

    Full Text Available Sage (Salvia officinalis L. is cultivated worldwide for its aromatic leaves which are used as herbal spice and for phytopharmaceutical applications. Fast analytical strategies for essential oil analysis, performed directly on plant material would reduce the delay between sampling and analytical results. This would enhance product quality by improving technical control of cultivation. The attenuated total reflectance Fourier transform infrared (ATR-FTIR spectroscopy method described here provides a reliable calibration model for quantification of essential oil components (EOC and its main constituents (e.g. -thujone and -thujone directly on dried, intact leaves of sage. Except for drying no further sample preparation is required for ATR-FTIR and the measurement time of less than 5 min per sample contrasts with the most common alternative of hydro-distillation followed by GC analysis which can take several hours per sample.

  20. Thermal behaviors of stainless steel tube based GeO2 ATR hollow fibers for transmitting CO2 laser radiations

    Science.gov (United States)

    Wang, Xu; Wang, Lin; Fu, Xiaohong; Jing, Chengbin; Yue, Fangyu; Yang, Pingxiong; Chu, Junhao

    2017-10-01

    The stainless steel (SUS) capillary tube attenuated total reflective (ATR) GeO2 hollow waveguide has advantages of low fabrication cost, strong mechanic strength and low transmission loss. It can find laser power delivery applications such as laser surgery, and material processing. However, the temperature rise of the operating waveguide may affect the laser delivery stability and the laser surgery safety. The thermal behaviors of the SUS ATR hollow fiber transmitting CO2 laser were investigated theoretically and experimentally in this work. Both theoretic simulations and experimental results disclose the periodic oscillatory behavior of the fiber temperature. The influence of input laser power on fiber temperature has been quantitatively discussed. A maximum input laser power of 23 W is predicted for laser surgery in which case the fiber temperature had better be lower than 47 °C to avoid tissue scalds. An input laser power smaller than 137 W is suggested preventing the fiber from being overheated (150 °C).

  1. AGR-2 Final Data Qualification Report for U.S. Capsules - ATR Cycles 147A Through 154B

    Energy Technology Data Exchange (ETDEWEB)

    Pham, Binh T. [Idaho National Lab. (INL), Idaho Falls, ID (United States). Very High-Temperature Reactor Technology Development Office; Einerson, Jeffrey J. [Idaho National Lab. (INL), Idaho Falls, ID (United States). Very High-Temperature Reactor Technology Development Office

    2014-07-01

    This report provides the data qualification status of AGR-2 fuel irradiation experimental data in four U.S. capsules from all 15 Advanced Test Reactor (ATR) Cycles 147A, 148A, 148B, 149A, 149B, 150A, 150B, 151A, 151B, 152A, 152B, 153A, 153B, 154A, and 154B, as recorded in the Nuclear Data Management and Analysis System (NDMAS). Thus, this report covers data qualification status for the entire AGR-2 irradiation and will replace four previously issued AGR-2 data qualification reports (e.g., INL/EXT-11-22798, INL/EXT-12-26184, INL/EXT-13-29701, and INL/EXT-13-30750). During AGR-2 irradiation, two cycles, 152A and 153A, occurred when the ATR core was briefly at low power, so AGR-2 irradiation data are not used for physics and thermal calculations. Also, two cycles, 150A and 153B, are Power Axial Locator Mechanism (PALM) cycles when the ATR power is higher than during normal cycles. During the first PALM cycle, 150A, the experiment was temporarily moved from the B-12 location to the ATR water canal and during the second PALM cycle, 153B, the experiment was temporarily moved from the B-12 location to the I-24 location to avoid being overheated. During the “Outage” cycle, 153A, seven flow meters were installed downstream from seven Fission Product Monitoring System (FPMS) monitors to measure flows from the monitors and these data are included in the NDMAS database.

  2. Raman and IR-ATR spectroscopy studies of heteroepitaxial structures with a GaN:C top layer

    Science.gov (United States)

    Cerqueira, M. F.; Vieira, L. G.; Alves, A.; Correia, R.; Huber, M.; Andreev, A.; Bonanni, A.; Vasilevskiy, M. I.

    2017-09-01

    This work, motivated by the technologically important task of determination of carbon dopant location in the GaN crystal lattice, employed Raman spectroscopy, with both resonant and non-resonant excitation, and infrared (IR) spectroscopy, in the attenuated total reflection (ATR) configuration, to study lattice vibration modes in a set of carbon-doped GaN (GaN:C) epilayers grown by metalorganic vapour phase epitaxy. We analyse Raman and IR-ATR spectra from the point of view of possible effects of the carbon doping, namely: (i) local vibration mode of C atoms in the nitrogen sublattice (whose frequency we theoretically estimate as 768 cm-1 using an isotope defect model), and (ii) shift in the positions of longitudinal modes owing to the phonon-plasmon coupling. We find only indirect hints of the doping effect on the resonant Raman spectra. However, we show theoretically and confirm experimentally that the IR-ATR spectroscopy can be a much more sensitive tool for this purpose, at least for the considered structures. A weak perturbation of the dielectric function of GaN:C, caused by the substitutional carbon impurity, is shown to produce a measurable dip in the ATR reflectivity spectra at  ≈770 cm-1 for both p- and s-polarizations. Moreover, it influences a specific (guided-wave type) mode observed at  ≈737 cm-1, originating from the GaN layer, which appears in the narrow frequency window where the real parts of the two components of the dielectric tensor of the hexagonal crystal have opposite signs. This interpretation is supported by our modelling of the whole multilayer structure, using a transfer matrix formalism.

  3. ATR-FTIR spectroscopic characterization of coexisting carbonate surface complexes on hematite

    Science.gov (United States)

    Bargar, J.R.; Kubicki, J.D.; Reitmeyer, R.; Davis, J.A.

    2005-01-01

    The speciation of carbonate adsorbed to hematite in air-equilibrated aqueous solutions has been studied using ATR-FTIR spectroscopy. Samples were measured over a range of pH conditions, at 0.1 M NaCl and at low ionic strength, and in H2O and D2O solutions to permit a multispecies analysis of the data. Second-derivative analyses and fits to the spectra indicate the presence of two major and two minor surface-bound carbonate species. The two major complexes coexist at near-neutral pH and low ionic strength. One of these two complexes is relatively sensitive to ionic strength, being displaced at 0.1 M NaCl, whereas the other is not. Comparison of experimental to DFT/MO-calculated frequencies suggest these two major species to be (a) a monodentate binuclear inner-sphere carbonate surface complex, and (b) a fully or partially solvated carbonate (CO32-) species that is symmetry broken and appears to reside in the structured vicinal water layers at the hematite-water interface, retained by hydrogen bonding and/or other forces. Minor carbonate complexes include diffuse layer CO32- and an unidentified inner-sphere species. Both of the dominant species observed here are likely to be significant controls of the surface charge and sorptive properties of Fe-oxides. Copyright ?? 2005 Elsevier Ltd.

  4. Reagent-free simultaneous determination of glucose and cholesterol in whole blood by FTIR-ATR

    Science.gov (United States)

    Li, Zhigang; Lv, Hong; Li, Tianhe; Si, Guangyuan; Wang, Qiaoyun; Lv, Jiangtao; Hu, Xiaofei

    2017-05-01

    Reagent-free determination of multiple analytes is an active and promising field of research in clinical analysis. In this work, the determination of glucose and cholesterol in whole blood using Fourier transform infrared (FTIR) spectroscopy equipped with an attenuated total reflectance (ATR) accessory was performed. A comprehensive sample selection rule in multi space based on SPXY was proposed, termed C-SPXY. The core idea is to make full use of different derivative spectra space to construct the calibration set which preserves the more effective information. On this basis, a partial least squares (PLS) regression fusion modeling method was also presented aiming at improving prediction accuracy of glucose and cholesterol concentration in whole blood samples. Compared with other methods based on single spectra space, the proposed fusion model based on multi spectra space C-SPXY method provides smaller RMSEP values. Experimental results demonstrate that the proposed method and model provides superior predictive power and holds a good application prospect in the field of clinical analysis.

  5. Analysis code for medium and small rupture accidents in ATR. LOTRAC/HEATUP

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1997-08-01

    In the evaluation of thermo-hydraulic and fuel temperature transient changes in the events which are classified in medium and small rupture accidents of reactor coolant loss that is the safety evaluation event of the ATR, the analysis code for synthetic thermo-hydraulic transient change at the time of medium and small ruptures LOTRAC and the detailed analysis code for fuel temperature HEATUP are used, respectively. By using the LOTAC, the thermo-hydraulic behavior of reactor cooling facility and the temperature behavior of fuel at the time of blow-down are analyzed, and also the characteristics of changing reactor thermal output is analyzed, considering the functioning characteristics of emergency core cooling system. Based on the data of thermo-hydraulic behavior obtained by the LOTRAC, the time of beginning the turn-around of fuel cladding tube temperature obtained by the data of ECCS pouring characteristics, the heat transfer rate after the turn-around and so on, the detailed temperature change of fuel elements is analyzed by the HEATUP, and the highest temperature and the amount of oxidation of fuel cladding tubes are determined. The LOTRAC code, the HEATUP code, various analysis models, and rupture simulation experiment are reported. (K.I.)

  6. Tungstate (VI) sorption on hematite: An in situ ATR-FTIR probe on the mechanism.

    Science.gov (United States)

    Rakshit, Sudipta; Sallman, Bryan; Davantés, Athénais; Lefèvre, Grégory

    2017-02-01

    Owing to the suspected toxicity and carcinogenicity of tungstate (VI) oxyanions [i.e. mono tungstate and several polytungstate, generally represented by W (VI)], the environmental fate of W (VI) has been widely studied. Sorption is regarded as a major mechanism by which W (VI) species are retained in the solid/water interface. Iron (hydr)oxides have been considered important environmental sinks for W (VI) species. Here we report sorption mechanisms of W (VI) on a common iron oxide mineral-hematite under environmentally relevant solution properties using in situ attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopic probes. Initial W (VI) loadings varied from 10 to 200 μM at fixed pH values ranged from 4.6 to 8.1. For pH envelop (pHs = 4.6, 5.0, 5.5, 6.0, 6.5, 7.5, and 8.1) experiments, fixed W (VI) concentrations (i.e. 10 & 200 μM) were used to understand the effects of pH. The results indicated that at acidic pH values (pH hematite surface and the strength of the interaction increases with decreasing pH. In addition, initial W (VI) concentration affected the sorption mechanisms of W (VI) on hematite. Our study will aid the molecular level understanding of W (VI) retention on iron oxide surfaces. Copyright © 2016 Elsevier Ltd. All rights reserved.

  7. Effects of Near Infrared Radiation on DNA. DLS and ATR-FTIR Study.

    Science.gov (United States)

    Szymborska-Małek, Katarzyna; Komorowska, Małgorzata; Gąsior-Głogowska, Marlena

    2018-01-05

    We presume that the primary effect of Near Infrared (NIR) radiation on aqueous solutions of biological molecules concerns modification of hydrogen bonded structures mainly the global and the hydration shell water molecules. Since water has a significant influence on the DNA structure, we expect that the thermal stability of DNA could be modified by NIR radiation. The herring sperm DNA was exposed to NIR radiation (700-1100nm) for 5, 10, and 20min periods. The temperature dependent infrared measurements were done for the thin films formed on the diamond ATR crystal from evaporated DNA solutions exposed and unexposed to NIR radiation. For the NIR-treated samples (at room temperature) the B form was better conserved than in the control sample independently of the irradiation period. Above 50°C a considerable increase in the A form was only observed for 10min NIR exposed samples. The hydrodynamic radius, (Rh), studied by the dynamic light scattering, showed drastic decrease with the increasing irradiation time. Principal components analysis (PCA) allowed to detect the spectral features correlated with the NIR effect and thermal stability of the DNA films. Obtained results strongly support the idea that the photoionization of water by NIR radiation in presence of DNA molecules is the main factor influencing on its physicochemical properties. Copyright © 2017 Elsevier B.V. All rights reserved.

  8. ATR discrimination-SNR for HRR assuming χ2 model of RCS variability

    Science.gov (United States)

    Holt, Craig R.; Schmidt, Steven L.; Attili, Joseph B.

    2001-10-01

    A discrimination SNR for predicting classification performance is developed as an analogy to the RADAR equation that is used to predict detection performance. It assumes a statistical model for the target radar cross-section (RCS) and that the resulting likelihood classifier is employed. The relationship between the probability of classification errors and the dB value of the discrimination SNR is obtained. A specific form for the likelihood classifier and the discrimination SNR is developed assuming that the variability of the target RCS is described by a (chi) 2 - distribution. The form of this (chi) 2 - based classifier is novel and significantly different from the more common Gaussian based mean-square-error classifier. It is shown that the discrimination SNR has an intuitive interpretation in terms of the number of radar samples, the average contrast between targets and the contrast-noise. The use of this tool is illustrated using compact range High Range Resolution (HRR) Doppler measurements from the U.S. Army National Ground Intelligence Center (NGIC). The sensitivity of ATR performance to radar parameters is quantified using the discrimination SNR with gains measured in meaningful dB units.

  9. The Conference Proceedings of the 2003 Air Transport Research Society (ATRS) World Conference, Volume 5

    Science.gov (United States)

    Bowen, Brent (Editor); Gudmundsson, Sveinn (Editor); Oum, Tae (Editor)

    2003-01-01

    The UNO Aviation Institute Monograph Series began in 1994 as a key component of the education outreach and information transfer missions of the Aviation Institute and the NASA Nebraska Space Grant & EPSCoR Programs. The series is an outlet for aviation materials to be indexed and disseminated through an efficient medium. Publications are welcome in all aspects of aviation. Publication formats may include, but are not limited to, conference proceedings, bibliographies, research reports, manuals, technical reports, and other documents that should be archived and indexed for future reference by the aviation and world wide communities. The Conference proceedings of the 2003 Air Transport Research Society (ATRS) world conference, volume 5 is presented. The topics include: 1) The Temporal Configuration of Airline Networks in Europe; 2) Determination and Applications of Environmental Costs at Different Sized Airports-Aircraft Noise and Engine Emissions; 3) Cost Effective Measures to Reduce CO2 Emissions in the Air Freight Sector; 4) An Assessment of the Sustainability of Air Transport System: Quantification of Indicators; 5) Regulation, Competition and Network Evolution in Aviation; 6) Regulation in the Air: Price and Frequency Cap; 7) Industry Consolidation and Future Airline Network Structures in Europe; 8) Application of Core Theory to the U.S. Airline Industry; 9) Air Freight Transshipment Route Choice Analysis; 10) A Fuzzy Approach of the Competition on Air Transport Market; and 11) Developing Passenger Demand Models for International Aviation from/to Egypt: A Case Study of Cairo Airport and Egyptair.

  10. Quantitative monitoring of membrane permeation via in-situ ATR FT-IR spectroscopy

    Science.gov (United States)

    Beckingham, Bryan; Miller, Daniel

    Ion conducting membranes are of interest for various energy applications including fuel cells and artificial photosynthesis systems. Within the context of artificial photosynthesis, membranes are desired that facilitate the ion transport necessary to feed the electrochemical reactions while meeting various additional selectivity and permeability demands depending on the CO2 reduction products. Herein, we demonstrate the use of in-situ ATR FT-IR spectroscopy to quantitatively resolve the concentration of single and multicomponent mixtures of various CO2 reduction products including methanol, formate and acetate. We then apply this methodology to the in-situ monitoring of the permeation of single and multicomponent mixtures across commercially available membranes. Membrane permeabilities and selectivities calculated from the single component time-resolved concentration curves are compared to the multicomponent permeation experiments. This material is based upon work performed at the Joint Center for Artificial Photosynthesis, a DOE Energy Innovation Hub, supported through the Office of Science of the U.S. Department of Energy under Award Number DE-SC000493.

  11. Probing the Mec1ATR Checkpoint Activation Mechanism with Small Peptides.

    Science.gov (United States)

    Wanrooij, Paulina H; Tannous, Elias; Kumar, Sandeep; Navadgi-Patil, Vasundhara M; Burgers, Peter M

    2016-01-01

    Yeast Mec1, the ortholog of human ATR, is the apical protein kinase that initiates the cell cycle checkpoint in response to DNA damage and replication stress. The basal activity of Mec1 kinase is activated by cell cycle phase-specific activators. Three distinct activators stimulate Mec1 kinase using an intrinsically disordered domain of the protein. These are the Ddc1 subunit of the 9-1-1 checkpoint clamp (ortholog of human and Schizosaccharomyces pombe Rad9), the replication initiator Dpb11 (ortholog of human TopBP1 and S. pombe Cut5), and the multifunctional nuclease/helicase Dna2. Here, we use small peptides to determine the requirements for Mec1 activation. For Ddc1, we identify two essential aromatic amino acids in a hydrophobic environment that when fused together are proficient activators. Using this increased insight, we have been able to identify homologous motifs in S. pombe Rad9 that can activate Mec1. Furthermore, we show that a 9-amino acid Dna2-based peptide is sufficient for Mec1 activation. Studies with mutant activators suggest that binding of an activator to Mec1 is a two-step process, the first step involving the obligatory binding of essential aromatic amino acids to Mec1, followed by an enhancement in binding energy through interactions with neighboring sequences. © 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

  12. S phase block following MEC1ATR inactivation occurs without severe dNTP depletion

    Directory of Open Access Journals (Sweden)

    Caroline Earp

    2015-12-01

    Full Text Available Inactivation of Mec1, the budding yeast ATR, results in a permanent S phase arrest followed by chromosome breakage and cell death during G2/M. The S phase arrest is proposed to stem from a defect in Mec1-mediated degradation of Sml1, a conserved inhibitor of ribonucleotide reductase (RNR, causing a severe depletion in cellular dNTP pools. Here, the casual link between the S phase arrest, Sml1, and dNTP-levels is examined using a temperature sensitive mec1 mutant. In addition to S phase arrest, thermal inactivation of Mec1 leads to constitutively high levels of Sml1 and an S phase arrest. Expression of a novel suppressor, GIS2, a conserved mRNA binding zinc finger protein, rescues the arrest without down-regulating Sml1 levels. The dNTP pool in mec1 is reduced by ∼17% and GIS2 expression restores it, but only partially, to ∼93% of a control. We infer that the permanent S phase block following Mec1 inactivation can be uncoupled from its role in Sml1 down-regulation. Furthermore, unexpectedly modest effects of mec1 and GIS2 on dNTP levels suggest that the S phase arrest is unlikely to result from a severe depletion of dNTP pool as assumed, but a heightened sensitivity to small changes in its availability.

  13. Effects of Near Infrared Radiation on DNA. DLS and ATR-FTIR Study

    Science.gov (United States)

    Szymborska-Małek, Katarzyna; Komorowska, Małgorzata; Gąsior-Głogowska, Marlena

    2018-01-01

    We presume that the primary effect of Near Infrared (NIR) radiation on aqueous solutions of biological molecules concerns modification of hydrogen bonded structures mainly the global and the hydration shell water molecules. Since water has a significant influence on the DNA structure, we expect that the thermal stability of DNA could be modified by NIR radiation. The herring sperm DNA was exposed to NIR radiation (700-1100 nm) for 5, 10, and 20 min periods. The temperature dependent infrared measurements were done for the thin films formed on the diamond ATR crystal from evaporated DNA solutions exposed and unexposed to NIR radiation. For the NIR-treated samples (at room temperature) the B form was better conserved than in the control sample independently of the irradiation period. Above 50 °C a considerable increase in the A form was only observed for 10 min NIR exposed samples. The hydrodynamic radius, (Rh), studied by the dynamic light scattering, showed drastic decrease with the increasing irradiation time. Principal components analysis (PCA) allowed to detect the spectral features correlated with the NIR effect and thermal stability of the DNA films. Obtained results strongly support the idea that the photoionization of water by NIR radiation in presence of DNA molecules is the main factor influencing on its physicochemical properties.

  14. A further insight into the adsorption mechanism of protein on hydroxyapatite by FTIR-ATR spectrometry

    Science.gov (United States)

    Lin, Zhongyu; Hu, Ren; Zhou, Jianzhang; Ye, Yiwen; Xu, Zhaoxi; Lin, Changjian

    2017-02-01

    The adsorption mechanism of bovine serum albumin (BSA) on hydroxyapatite (HA) for different time intervals has been studied by Fourier transform infrared (FTIR)-attenuated total internal reflectance (ATR) spectrometry in this paper. The difference spectra obtained in HA and BSA frequency regions demonstrate that the binding of Pdbnd O, from the phosphate (PO43 -) of HA, to the hydrogen of methyl (- CH3), methene (- CH2) and amideII (- CNH) in the protein appears to be much faster and stronger than that of the Psbnd O group. In addition, Ca2 + must serve as a key role in the interaction of BSA with HA. The binding of Ca2 + to the oxygen of the peptide bond seems to induce a significant reconformation of polypeptide backbones from β-pleated sheet to α-helix and β-turn of helical circles. This alteration seems to have been accompanied by much hydrogen of polypeptides driven to bind PO43 - and OH- of the HA actively and much -C = O and Hsbnd Nsbnd groups of the peptide bond freed from inter-chain hydrogen bonding to react on Ca2 + and combine strongly with the HA surface. This might be well expected to promote the HA biomineralization.

  15. Quantitative analysis of anti-inflammatory drugs using FTIR-ATR spectrometry

    Science.gov (United States)

    Hassib, Sonia T.; Hassan, Ghaneya S.; El-Zaher, Asmaa A.; Fouad, Marwa A.; Taha, Enas A.

    2017-11-01

    Four simple, accurate, sensitive and economic Attenuated Total Reflectance-Fourier Transform Infrared Spectroscopic (ATR-FTIR) methods have been developed for the quantitative estimation of some non-steroidal anti-inflammatory drugs. The first method involves the determination of Etodolac by direct measurement of the absorbance at 1716 cm- 1. In the second method, the second derivative of the IR spectra of Tolfenamic acid and its reported degradation product (2-chlorobenzoic acid) was used and the amplitudes were measured at 1084.27 cm- 1 and 1056.02 cm- 1 for Tolfenamic acid and 2-chlorobenzoic acid, respectively. The third method used the first derivative of the IR spectra of Bumadizone and its reported degradation product, N,N-diphenylhydrazine and the amplitudes were measured at 2874.98 cm- 1 and 2160.32 cm- 1 for Bumadizone and N,N-diphenylhydrazine, respectively. The fourth method depends on measuring the amplitude of Diacerein at 1059.18 cm- 1 and of rhein, its reported degradation product, at 1079.32 cm- 1 in their first derivative spectra. The four methods were successfully applied on the pharmaceutical formulations by extracting the active constituent in chloroform and the extract was directly measured in liquid phase mode using a specific cell. Moreover, validation of these methods was carried out following International Conference of Harmonisation (ICH) guidelines.

  16. In situ ATR-FTIR study of the early stages of fly ash geopolymer gel formation.

    Science.gov (United States)

    Rees, Catherine A; Provis, John L; Lukey, Grant C; van Deventer, Jannie S J

    2007-08-14

    The kinetics of geopolymer formation are monitored using a novel in situ attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopic technique. Reaction rates are determined from the intensity variation of the bands related to the geopolymer gel network and the unreacted fly ash particles. Comparison with deuterated geopolymer samples provides critical information regarding peak assignments. An initial induction (lag) period is observed to occur for hydroxide-activated geopolymers, followed by gel evolution according to an approximately linear reaction profile. The length of the lag period is reduced by increasing the concentration of NaOH. An increase in the rate of network formation also occurs with increasing NaOH concentration up to a maximum point, beyond which an increased NaOH concentration leads to a reduced rate of network formation. This trend is attributed to the competing effects of increased alkalinity and stronger ion pairing with an increase in NaOH concentration. In situ analysis also shows that the rate of fly ash dissolution is similar for all moderate- to high-alkali geopolymer slurries, which is attributed to the very highly water-deficient nature of these systems and is contrary to predictions from classical glass dissolution chemistry. This provides for the first time detailed kinetic information describing fly ash geopolymer formation kinetics.

  17. Application of FTIR-ATR Spectroscopy to Determine the Extent of Lipid Peroxidation in Plasma during Haemodialysis.

    Science.gov (United States)

    Oleszko, Adam; Olsztyńska-Janus, Sylwia; Walski, Tomasz; Grzeszczuk-Kuć, Karolina; Bujok, Jolanta; Gałecka, Katarzyna; Czerski, Albert; Witkiewicz, Wojciech; Komorowska, Małgorzata

    2015-01-01

    During a haemodialysis (HD), because of the contact of blood with the surface of the dialyser, the immune system becomes activated and reactive oxygen species (ROS) are released into plasma. Particularly exposed to the ROS are lipids and proteins contained in plasma, which undergo peroxidation. The main breakdown product of oxidized lipids is the malondialdehyde (MDA). A common method for measuring the concentration of MDA is a thiobarbituric acid reactive substances (TBARS) method. Despite the formation of MDA in plasma during HD, its concentration decreases because it is removed from the blood in the dialyser. Therefore, this research proposes the Fourier Transform Infrared Attenuated Total Reflectance (FTIR-ATR) spectroscopy, which enables determination of primary peroxidation products. We examined the influence of the amount of hydrogen peroxide added to lipid suspension that was earlier extracted from plasma specimen on lipid peroxidation with use of TBARS and FTIR-ATR methods. Linear correlation between these methods was shown. The proposed method was effective during the evaluation of changes in the extent of lipid peroxidation in plasma during a haemodialysis in sheep. A measurement using the FTIR-ATR showed an increase in plasma lipid peroxidation after 15 and 240 minutes of treatment, while the TBARS concentration was respectively lower.

  18. The ATM and ATR inhibitors CGK733 and caffeine suppress cyclin D1 levels and inhibit cell proliferation

    Directory of Open Access Journals (Sweden)

    Sunnerhagen Per

    2009-11-01

    Full Text Available Abstract The ataxia telangiectasia mutated (ATM and the ATM- related (ATR kinases play a central role in facilitating the resistance of cancer cells to genotoxic treatment regimens. The components of the ATM and ATR regulated signaling pathways thus provide attractive pharmacological targets, since their inhibition enhances cellular sensitivity to chemo- and radiotherapy. Caffeine as well as more specific inhibitors of ATM (KU55933 or ATM and ATR (CGK733 have recently been shown to induce cell death in drug-induced senescent tumor cells. Addition of these agents to cancer cells previously rendered senescent by exposure to genotoxins suppressed the ATM mediated p21 expression required for the survival of these cells. The precise molecular pharmacology of these agents however, is not well characterized. Herein, we report that caffeine, CGK733, and to a lesser extent KU55933, inhibit the proliferation of otherwise untreated human cancer and non-transformed mouse fibroblast cell lines. Exposure of human cancer cell lines to caffeine and CGK733 was associated with a rapid decline in cyclin D1 protein levels and a reduction in the levels of both phosphorylated and total retinoblastoma protein (RB. Our studies suggest that observations based on the effects of these compounds on cell proliferation and survival must be interpreted with caution. The differential effects of caffeine/CGK733 and KU55933 on cyclin D1 protein levels suggest that these agents will exhibit dissimilar molecular pharmacological profiles.

  19. Validation of ATR FT-IR to identify polymers of plastic marine debris, including those ingested by marine organisms.

    Science.gov (United States)

    Jung, Melissa R; Horgen, F David; Orski, Sara V; Rodriguez C, Viviana; Beers, Kathryn L; Balazs, George H; Jones, T Todd; Work, Thierry M; Brignac, Kayla C; Royer, Sarah-Jeanne; Hyrenbach, K David; Jensen, Brenda A; Lynch, Jennifer M

    2018-02-01

    Polymer identification of plastic marine debris can help identify its sources, degradation, and fate. We optimized and validated a fast, simple, and accessible technique, attenuated total reflectance Fourier transform infrared spectroscopy (ATR FT-IR), to identify polymers contained in plastic ingested by sea turtles. Spectra of consumer good items with known resin identification codes #1-6 and several #7 plastics were compared to standard and raw manufactured polymers. High temperature size exclusion chromatography measurements confirmed ATR FT-IR could differentiate these polymers. High-density (HDPE) and low-density polyethylene (LDPE) discrimination is challenging but a clear step-by-step guide is provided that identified 78% of ingested PE samples. The optimal cleaning methods consisted of wiping ingested pieces with water or cutting. Of 828 ingested plastics pieces from 50 Pacific sea turtles, 96% were identified by ATR FT-IR as HDPE, LDPE, unknown PE, polypropylene (PP), PE and PP mixtures, polystyrene, polyvinyl chloride, and nylon. Published by Elsevier Ltd.

  20. Rapid detection of gelatin in dental materials using attenuated total reflection fourier transform infrared spectroscopy (ATR-FTIR)

    Science.gov (United States)

    Irfanita, N.; Jaswir, I.; Mirghani, M. E. S.; Sukmasari, S.; Ardini, Y. D.; Lestari, W.

    2017-08-01

    The presence of gelatin is not limited to food products but has also been found in pharmaceuticals. Most dental materials available in Malaysia are imported from other countries and might contain gelatin which is a protein derived either from porcine, bovine or other animal sources. Authentication of gelatin is crucial due to religious and health concerns. Therefore, this study aimed to detect gelatin in dental materials using ATR-FTIR. Forty two samples of dental material were purchased from dental suppliers and detection was done using ATR-FTIR. The spectrum from each sample was compared against standard bovine and porcine gelatin. Experimental dental paste containing bovine and porcine gelatin at concentrations of 5, 10, 15 and 20% were also prepared for quantification analysis. The results showed that gelatin was present in nine out of forty two samples of dental materials but the species of origin was not confirmed. Meanwhile, in the experimental bovine and porcine dental paste, it was seen that as the concentration increased, the intensity of the absorption of Amide group also increased. Thus, ATR-FTIR can be utilized as a reliable tool to detect gelatin in dental materials and other pharmaceuticals.

  1. ATR-FT-IR spectroscopy in the region of 550-230 cm -1 for identification of inorganic pigments

    Science.gov (United States)

    Vahur, Signe; Teearu, Anu; Leito, Ivo

    2010-03-01

    A comprehensive study of ATR-FT-IR spectra of 40 inorganic pigments of different colours widely used in historical paintings has been carried out in the low wave number spectral range (550-230 cm -1). The infrared spectra were recorded from mixtures of pigment and linseed oil. It is demonstrated that this spectral range - essentially devoid of absorption peaks of the common binder materials - can be well used for identification of inorganic pigments in paint samples thereby markedly extending the possibilities of pigment identification/confirmation by ATR-IR spectroscopy into the realm of pigments having no absorptions in the mid-IR region. In some cases the method can be used alone for pigment identification and in many cases it provides useful additional evidence for pigment identification using other instrumental techniques (electron microprobe analysis, XRF, optical microscopy). Together with earlier work this study provides a comprehensive overview of the pigment identification possibilities using ATR-FT-IR as well as a collection of reference spectra and is expected to be a useful reference for conservation practitioners.

  2. Structural transformation of synthetic hydroxyapatite under simulated in vivo conditions studied with ATR-FTIR spectroscopic imaging

    Science.gov (United States)

    Sroka-Bartnicka, Anna; Borkowski, Leszek; Ginalska, Grazyna; Ślósarczyk, Anna; Kazarian, Sergei G.

    2017-01-01

    Hydroxyapatite and carbonate-substituted hydroxyapatite are widely used in bone tissue engineering and regenerative medicine. Both apatite materials were embedded into recently developed ceramic/polymer composites, subjected to Simulated Body Fluid (SBF) for 30 days and characterized using ATR-FTIR spectroscopic imaging to assess their behaviour and structures. The specific aim was to detect the transition phases between both types of hydroxyapatite during the test and to analyze the surface modification caused by SBF. ATR-FTIR spectroscopic imaging was successfully applied to characterise changes in the hydroxyapatite lattice due to the elastic properties of the scaffolds. It was observed that SBF treatment caused a replacement of phosphates in the lattice of non-substituted hydroxyapatite by carbonate ions. A detailed study excluded the formation of pure A type carbonate apatite. In turn, CO32- content in synthetic carbonate-substituted hydroxyapatite decreased. The usefulness of ATR-FTIR spectroscopic imaging studies in the evaluation of elastic and porous β-glucan hydroxyapatite composites has been demonstrated.

  3. HMGA2 Inhibits Apoptosis through Interaction with ATR-CHK1 Signaling Complex in Human Cancer Cells

    Directory of Open Access Journals (Sweden)

    Suchitra Natarajan

    2013-03-01

    Full Text Available The non-histone chromatin binding protein high mobility group AT-hook 2 (HMGA2 is expressed in stem cells and many cancer cells, including tumor initiating cells, but not translated in normal human somatic cells. The presence of HMGA2 is correlated with advanced neoplastic disease and poor prognosis for patients. We had previously demonstrated a role of HMGA2 in DNA repair pathways. In the present study, we employed different human tumor cell models with endogenous and exogenous expression of HMGA2 and show that upon DNA damage, the presence of HMGA2 caused an increased and sustained phosphorylation of the ataxia telangiectasia and Rad3-related kinase (ATR and its downstream target checkpoint kinase 1 (CHK1. The presence of activated pCHK1Ser296 coincided with prolonged G2/M block and increased tumor cell survival, which was enhanced further in the presence of HMGA2. Our study, thus, identifies a novel relationship between the ATR-CHK1 DNA damage response pathway and HMGA2, which may support the DNA repair function of HMGA2 in cancer cells. Furthermore, our data provide a rationale for the use of inhibitors to ATR or CHK1 and HMGA2 in the treatment of HMGA2-positive human cancer cells.

  4. Tel2 structure and function in the Hsp90-dependent maturation of mTOR and ATR complexes

    Energy Technology Data Exchange (ETDEWEB)

    Takai, Hiroyuki; Xie, Yihu; de Lange, Titia; Pavletich, Nikola P. (Rockefeller); (SKI)

    2010-09-20

    We reported previously that the stability of all mammalian phosphatidylinositol 3-kinase-related protein kinases (PIKKs) depends on their interaction with Tel2, the ortholog of yeast Tel2 and Caenorhabditis elegans Clk-2. Here we provide evidence that Tel2 acts with Hsp90 in the maturation of PIKK complexes. Quantitative immunoblotting showed that the abundance of Tel2 is low compared with the PIKKs, and Tel2 preferentially bound newly synthesized ATM, ATR, mTOR, and DNA-PKcs. Tel2 complexes contained, in addition to Tti1-Tti2, the Hsp90 chaperone, and inhibition of Hsp90 interfered with the interaction of Tel2 with the PIKKs. Analysis of in vivo labeled nascent protein complexes showed that Tel2 and Hsp90 mediate the formation of the mTOR TORC1 and TORC2 complexes and the association of ATR with ATRIP. The structure of yeast Tel2, reported here, shows that Tel2 consists of HEAT-like helical repeats that assemble into two separate {alpha}-solenoids. Through mutagenesis, we identify a surface patch of conserved residues involved in binding to the Tti1-Tti2 complex in vitro. In vivo, mutation of this conserved patch affects cell growth, levels of PIKKs, and ATM/ATR-mediated checkpoint signaling, highlighting the importance of Tti1-Tti2 binding to the function of Tel2. Taken together, our data suggest that the Tel2-Tti1-Tti2 complex is a PIKK-specific cochaperone for Hsp90.

  5. AZD6738, A Novel Oral Inhibitor of ATR, Induces Synthetic Lethality with ATM Deficiency in Gastric Cancer Cells.

    Science.gov (United States)

    Min, Ahrum; Im, Seock-Ah; Jang, Hyemin; Kim, Seongyeong; Lee, Miso; Kim, Debora Keunyoung; Yang, Yaewon; Kim, Hee-Jun; Lee, Kyung-Hun; Kim, Jin Won; Kim, Tae-Yong; Oh, Do-Youn; Brown, Jeff; Lau, Alan; O'Connor, Mark J; Bang, Yung-Jue

    2017-04-01

    Ataxia telangiectasia and Rad3-related (ATR) can be considered an attractive target for cancer treatment due to its deleterious effect on cancer cells harboring a homologous recombination defect. The aim of this study was to investigate the potential use of the ATR inhibitor, AZD6738, to treat gastric cancer.In SNU-601 cells with dysfunctional ATM, AZD6738 treatment led to an accumulation of DNA damage due to dysfunctional RAD51 foci formation, S phase arrest, and caspase 3-dependent apoptosis. In contrast, SNU-484 cells with functional ATM were not sensitive to AZD6738. Inhibition of ATM in SNU-484 cells enhanced AZD6738 sensitivity to a level comparable with that observed in SNU-601 cells, showing that activation of the ATM-Chk2 signaling pathway attenuates AZD6738 sensitivity. In addition, decreased HDAC1 expression was found to be associated with ATM inactivation in SNU-601 cells, demonstrating the interaction between HDAC1 and ATM can affect sensitivity to AZD6738. Furthermore, in an in vivo tumor xenograft mouse model, AZD6738 significantly suppressed tumor growth and increased apoptosis.These findings suggest synthetic lethality between ATR inhibition and ATM deficiency in gastric cancer cells. Further clinical studies on the interaction between AZD 6738 and ATM deficiency are warranted to develop novel treatment strategies for gastric cancer. Mol Cancer Ther; 16(4); 566-77. ©2017 AACR. ©2017 American Association for Cancer Research.

  6. Improving precursor adsorption characteristics in ATR-FTIR spectroscopy with a ZrO{sub 2} nanoparticle coating

    Energy Technology Data Exchange (ETDEWEB)

    Park, Jaeseo [Korea Research Institute of Standards and Science, Center for Vacuum Technology (Korea, Republic of); Mun, Jihun [University of Science and Technology, Department of Advanced Device Technology (Korea, Republic of); Shin, Jae-Soo; Kim, Jongho; Park, Hee Jung [Daejeon University, Department of Advanced Materials Engineering (Korea, Republic of); Kang, Sang-Woo, E-mail: swkang@kriss.re.kr [Korea Research Institute of Standards and Science, Center for Vacuum Technology (Korea, Republic of)

    2017-02-15

    Nanoparticles were applied to a crystal surface to increase its precursor adsorption efficiency in an attenuated total reflection Fourier transform infrared (ATR-FTIR) spectrometer. Nanoparticles with varying dispersion stabilities were employed and the resulting precursor adsorption characteristics were assessed. The size of the nanoparticles was <100 nm (TEM). In order to vary the dispersion stability, ZrO{sub 2} nanoparticles were dispersed in aqueous solutions of different pH. The ZrO{sub 2} dispersion solutions were analyzed using scanning electron microscopy (SEM) while particle distribution measurements were analyzed using electrophoretic light scattering (ELS) and dynamic light scattering (DLS) techniques. ZrO{sub 2} nanoparticles dispersed in solutions of pH 3 and 11 exhibited the most stable zeta potentials (≥+30 or ≤−30 mV); these observations were confirmed by SEM analysis and particle distribution measurements. Hexamethyldisilazane (HMDS) was used as a precursor for ATR-FTIR spectroscopy. Consequently, when ZrO{sub 2} nanoparticle solutions with the best dispersion stabilities (pH 3 and 11) were applied to the adsorption crystal surface, the measurement efficiency of ATR-FTIR spectroscopy improved by ∼200 and 300%, respectively.

  7. Targeting the kinase activities of ATR and ATM exhibits antitumoral activity in mouse models of MLL-rearranged AML.

    Science.gov (United States)

    Morgado-Palacin, Isabel; Day, Amanda; Murga, Matilde; Lafarga, Vanesa; Anton, Marta Elena; Tubbs, Anthony; Chen, Hua Tang; Ergan, Aysegul; Anderson, Rhonda; Bhandoola, Avinash; Pike, Kurt G; Barlaam, Bernard; Cadogan, Elaine; Wang, Xi; Pierce, Andrew J; Hubbard, Chad; Armstrong, Scott A; Nussenzweig, André; Fernandez-Capetillo, Oscar

    2016-09-13

    Among the various subtypes of acute myeloid leukemia (AML), those with chromosomal rearrangements of the MLL oncogene (AML-MLL) have a poor prognosis. AML-MLL tumor cells are resistant to current genotoxic therapies because of an attenuated response by p53, a protein that induces cell cycle arrest and apoptosis in response to DNA damage. In addition to chemicals that damage DNA, efforts have focused on targeting DNA repair enzymes as a general chemotherapeutic approach to cancer treatment. Here, we found that inhibition of the kinase ATR, which is the primary sensor of DNA replication stress, induced chromosomal breakage and death of mouse AML(MLL) cells (with an MLL-ENL fusion and a constitutively active N-RAS independently of p53. Moreover, ATR inhibition as a single agent exhibited antitumoral activity, both reducing tumor burden after establishment and preventing tumors from growing, in an immunocompetent allograft mouse model of AML(MLL) and in xenografts of a human AML-MLL cell line. We also found that inhibition of ATM, a kinase that senses DNA double-strand breaks, also promoted the survival of the AML(MLL) mice. Collectively, these data indicated that ATR or ATM inhibition represent potential therapeutic strategies for the treatment of AML, especially MLL-driven leukemias. Copyright © 2016, American Association for the Advancement of Science.

  8. Hubungan Kadar Ft4 Dengan Kejadian Tirotoksikosis berdasarkan Penilaian Indeks New Castle Padawanita Dewasa di Daerah Ekses Yodium

    Directory of Open Access Journals (Sweden)

    Harsa Rusda

    2013-05-01

    Full Text Available AbstrakTirotoksikosis merupakan manifestasi klinis yang terjadi akibat peningkatan kadar hormon tiroid dalam darah. Kelebihan yodium merupakan salah satu penyebab terjadinya tirotoksikosis. Ini ditandai dengan hasil pemeriksaan kadar Ekskresi Yodium Urin (EYU > 199 μg/L. Tujuan: Penelitian ini bertujuan untuk mengetahui hubungan kadar FT4 dengan kejadian tirotoksikosis berdasarkan penilaian indeks New Castle pada wanita dewasa di daerah ekses yodium. Metode: Penelitian dilakukan dengan menganalisis data yang dikumpulkan secara Cross Sectional Study terhadap 37 wanita dewasa menggunakan metoda total sampling di Nagari Koto Salak, Kecamatan Koto Salak Kabupaten Dharmasraya yang merupakan daerah ekses yodium (median EYU 323,5 μg/L. Pengumpulan data dilakukan dengan wawancara menggunakan penilaian Indeks New Castle dan pengambilan darah untuk dilakukan pemeriksaan kadar FT4 dalam serum. Hasil: Analisis univariat didapatkan jumlah penduduk wanita dewasa dengan kadar FT4 meningkat sebanyak 14 persen dan nilai rata-rata 1,71 ng/dl. Penilaian indeks New Castle dalam kategori doubtful 16 persen dan tidak ditemukan penduduk yang termasuk dalam kategori toxic. Berdasarkan hasil uji statistik Chi-square, didapatkan p value=1. Kesimpulan: Tidak terdapat hubungan yang bermakna antara kadar FT4 dalam serum dengan kejadian tirotoksikosis pada wanita dewasa di derah ekses yodium. Saran: Perlu dilakukan penyuluhan mengenai asupan yodium kepada masyarakat dan diharapkan penelitian ini dapat menjadi masukan kepada pemerintah dalam mengambil kebijakan terhadap pemberian kapsul yodium serta melakukan kontrol kadar EYU secara teratur dan berkala.Kata kunci: FT4, tirotoksikosis, indeks New Castle, wanita, ekses yodium, tiroidAbstractThyrotoxicosis is a clinical manifestation that occurs due to elevated levels of thyroid hormones in the blood. Iodine excess is one of the causes of thyrotoxicosis. This is indicated by the results of urine iodine excretion levels (EYU

  9. PERFORMA FOTOSINTESIS Kappaphycus sp. (strain Sumba YANG DIUKUR BERDASARKAN EVOLUSI OKSIGEN TERLARUT PADA BEBERAPA TINGKAT SUHU DAN CAHAYA

    Directory of Open Access Journals (Sweden)

    Lideman Lideman

    2015-03-01

    Full Text Available Penelitian ini bertujuan untuk mengetahui pengaruh suhu dan cahaya terhadap laju fotosintesis Kappaphycus sp. (strain Sumba yang diukur berdasarkan perubahan oksigen terlarut. Pengukuran laju fotosintesis Kappaphycus sp. pertama-tama dilakukan pada suhu 20oC, 24oC, 28oC, dan 32oC pada tingkat cahaya 353 μmol photons m-2 s-1 untuk mendapatkan kurva fotosintesis versus suhu (kurva P-T. Selanjutnya, pengukuran laju fotosintesis dilakukan pada suhu 20oC, 24oC, dan 28oC dengan intensitas cahaya 9, 22, 46, 58, 87, 137, 245, 353, 487, 608, dan 789 μmol photons m-2 s-1 dan juga pengukuran laju respirasi pada tingkat cahaya 0 μmol photons m-2 s-1 untuk menghasilkan kurva fotosintesis versus cahaya (kurva P-I. Beberapa parameter fotosintesis yaitu: laju fotosintesis maksimum (Pmax, koefisien fotosintesis (α, intensitas cahaya jenuh (Ek, dan intensitas cahaya kompensasi (Ec dihitung dengan cara memplotkan kurva P-I terhadap model persamaan regresi non linear P = {Pmax x tanh (α / Pmax x I} + Rd. Hasil yang diperoleh menunjukkan bahwa laju fotosintesis tertinggi sebesar 6,92 μg O2 gww-1 min-1 dicapai pada suhu 28oC dengan tingkat cahaya 353 μmol photons m-2 s-1. Pada suhu 20oC, 24oC, dan 28oC, laju fotosintesis mencapai tingkat maksimum (Pmax pada intensitas cahaya (Ek 86,1; 154,2; dan 162,4 μmol photons m-2 s-1. Suhu yang optimum untuk aktivitas fotosintesis berkorelasi erat dengan suhu pada lingkungan budidaya di alam.

  10. Attenuated Total Reflection Fourier Transform Infrared (ATR FT-IR) for Rapid Determination of Microbial Cell Lipid Content: Correlation with Gas Chromatography-Mass Spectrometry (GC-MS).

    Science.gov (United States)

    Millan-Oropeza, Aaron; Rebois, Rolando; David, Michelle; Moussa, Fathi; Dazzi, Alexandre; Bleton, Jean; Virolle, Marie-Joelle; Deniset-Besseau, Ariane

    2017-10-01

    There is a growing interest worldwide for the production of renewable oil without mobilizing agriculture lands; fast and reliable methods are needed to identify highly oleaginous microorganisms of potential industrial interest. The aim of this study was to demonstrate the relevance of attenuated total reflection (ATR) spectroscopy to achieve this goal. To do so, the total lipid content of lyophilized samples of five Streptomyces strains with varying lipid content was assessed with two classical quantitative but time-consuming methods, gas chromatography-mass spectrometry (GC-MS) and ATR Fourier transform infrared (ATR FT-IR) spectroscopy in transmission mode with KBr pellets and the fast ATR method, often questioned for its lack of reliability. A linear correlation between these three methods was demonstrated allowing the establishment of equations to convert ATR values expressed as CO/amide I ratio, into micrograms of lipid per milligram of biomass. The ATR method proved to be as reliable and quantitative as the classical GC-MS and FT-IR in transmission mode methods but faster and more reproducible than the latter since it involves far less manipulation for sample preparation than the two others. Attenuated total reflection could be regarded as an efficient fast screening method to identify natural or genetically modified oleaginous microorganisms by the scientific community working in the field of bio-lipids.

  11. Radioresistance of chordoma cells is associated with the ATM/ATR pathway, in which RAD51 serves as an important downstream effector.

    Science.gov (United States)

    Zhang, Chao; Wang, Bing; Li, Lei; Li, Yawei; Li, Pengzhi; Lv, Guohua

    2017-09-01

    Surgery followed by radiotherapy is the standard treatment for chordomas, which are a rare but low-grade type of bone cancer arising from remnants of the embryonic notochord. However, disease recurrence following radiotherapy is common, most likely due to endogenous DNA repair mechanisms that promote cell survival upon radiation strikes. The ataxia telangiectasia mutated/ataxia telangiectasia mutated and Rad3 related (ATM/ATR)-mediated pathway has a critical role in DNA repair mechanisms; however, it has rarely been investigated in chordomas. In the present study, the expression of signal molecules related to the ATM/ATR pathway in chordoma tissues and adjacent normal tissues were initially examined using immunohistochemistry and western blot analysis. Chordoma U-CH1 and U-CH2 cells were subsequently used to investigate cell responses to ionizing radiation and the potential protective actions mediated by the ATM/ATR pathway. Phosphorylated (p)-ATM, p-ATR, γ-H2A histone family, member X (H2AX) and RAD51 were significantly upregulated in chordoma tissues relative to adjacent normal tissues (PATM, γ-H2AX and RAD51 expression in U-CH1 cells (PATM, p-ATR and RAD51 levels in U-CH2 cells (PATM/ATR pathway, in which RAD51 serves as an important downstream effector. Thus, RAD51 presents a promising therapeutic target for improving the outcome of radiotherapy treatment in chordomas.

  12. Dual inhibition of ATR and ATM potentiates the activity of trabectedin and lurbinectedin by perturbing the DNA damage response and homologous recombination repair.

    Science.gov (United States)

    Lima, Michelle; Bouzid, Hana; Soares, Daniele G; Selle, Frédéric; Morel, Claire; Galmarini, Carlos M; Henriques, João A P; Larsen, Annette K; Escargueil, Alexandre E

    2016-05-03

    Trabectedin (Yondelis®, ecteinascidin-743, ET-743) is a marine-derived natural product approved for treatment of advanced soft tissue sarcoma and relapsed platinum-sensitive ovarian cancer. Lurbinectedin is a novel anticancer agent structurally related to trabectedin. Both ecteinascidins generate DNA double-strand breaks that are processed through homologous recombination repair (HRR), thereby rendering HRR-deficient cells particularly sensitive. We here characterize the DNA damage response (DDR) to trabectedin and lurbinectedin in HeLa cells. Our results show that both compounds activate the ATM/Chk2 (ataxia-telangiectasia mutated/checkpoint kinase 2) and ATR/Chk1 (ATM and RAD3-related/checkpoint kinase 1) pathways. Interestingly, pharmacological inhibition of Chk1/2, ATR or ATM is not accompanied by any significant improvement of the cytotoxic activity of the ecteinascidins while dual inhibition of ATM and ATR strongly potentiates it. Accordingly, concomitant inhibition of both ATR and ATM is an absolute requirement to efficiently block the formation of γ-H2AX, MDC1, BRCA1 and Rad51 foci following exposure to the ecteinascidins. These results are not restricted to HeLa cells, but are shared by cisplatin-sensitive and -resistant ovarian carcinoma cells. Together, our data identify ATR and ATM as central coordinators of the DDR to ecteinascidins and provide a mechanistic rationale for combining these compounds with ATR and ATM inhibitors.

  13. An Approach for Routine Analytical Detection of Beeswax Adulteration Using FTIR-ATR Spectroscopy

    Directory of Open Access Journals (Sweden)

    Svečnjak Lidija

    2015-12-01

    Full Text Available Although beeswax adulteration represents one of the main beeswax quality issues, there are still no internationally standardised analytical methods for routine quality control. The objective of this study was to establish an analytical procedure suitable for routine detection of beeswax adulteration using FTIR-ATR spectroscopy. For the purpose of this study, reference IR spectra of virgin beeswax, paraffin, and their mixtures containing different proportions of paraffin (5 - 95%, were obtained. Mixtures were used for the establishment of calibration curves. To determine the prediction strength of IR spectral data for the share of paraffin in mixtures, the Partial Least Squares Regression method was used. The same procedure was conducted on beeswax-beef tallow mixtures. The model was validated using comb foundation samples of an unknown chemical background which had been collected from the international market (n = 56. Selected physico-chemical parameters were determined for comparison purposes. Results revealed a strong predictive power (R2 = 0.999 of IR spectra for the paraffin and beef tallow share in beeswax. The results also revealed that the majority of the analysed samples (89% were adulterated with paraffin; only 6 out of 56 (11% samples were identified as virgin beeswax, 28% of the samples exhibited a higher level of paraffin adulteration (>46% of paraffin, while the majority of the analysed samples (50% were found to be adulterated with 5 - 20% of paraffin. These results indicate an urgent need for routine beeswax authenticity control. In this study, we demonstrated that the analytical approach defining the standard curves for particular adulteration levels in beeswax, based on chemometric modelling of specific IR spectral region indicative for adulteration, enables reliable determination of the adulterant proportions in beeswax.

  14. Application of FTIR-ATR spectroscopy coupled with multivariate analysis for rapid estimation of butter adulteration.

    Science.gov (United States)

    Fadzlillah, Nurrulhidayah Ahmad; Rohman, Abdul; Ismail, Amin; Mustafa, Shuhaimi; Khatib, Alfi

    2013-01-01

    In dairy product sector, butter is one of the potential sources of fat soluble vitamins, namely vitamin A, D, E, K; consequently, butter is taken into account as high valuable price from other dairy products. This fact has attracted unscrupulous market players to blind butter with other animal fats to gain economic profit. Animal fats like mutton fat (MF) are potential to be mixed with butter due to the similarity in terms of fatty acid composition. This study focused on the application of FTIR-ATR spectroscopy in conjunction with chemometrics for classification and quantification of MF as adulterant in butter. The FTIR spectral region of 3910-710 cm⁻¹ was used for classification between butter and butter blended with MF at various concentrations with the aid of discriminant analysis (DA). DA is able to classify butter and adulterated butter without any mistakenly grouped. For quantitative analysis, partial least square (PLS) regression was used to develop a calibration model at the frequency regions of 3910-710 cm⁻¹. The equation obtained for the relationship between actual value of MF and FTIR predicted values of MF in PLS calibration model was y = 0.998x + 1.033, with the values of coefficient of determination (R²) and root mean square error of calibration are 0.998 and 0.046% (v/v), respectively. The PLS calibration model was subsequently used for the prediction of independent samples containing butter in the binary mixtures with MF. Using 9 principal components, root mean square error of prediction (RMSEP) is 1.68% (v/v). The results showed that FTIR spectroscopy can be used for the classification and quantification of MF in butter formulation for verification purposes.

  15. The complexity of DNA double strand break is a crucial factor for activating ATR signaling pathway for G2/M checkpoint regulation regardless of ATM function.

    Science.gov (United States)

    Xue, Lian; Furusawa, Yoshiya; Okayasu, Ryuichi; Miura, Masahiko; Cui, Xing; Liu, Cuihua; Hirayama, Ryoichi; Matsumoto, Yoshitaka; Yajima, Hirohiko; Yu, Dong

    2015-01-01

    DNA double strand break (DSB) repair pathway choice following ionizing radiation (IR) is currently an appealing research topic, which is still largely unclear. Our recent paper indicated that the complexity of DSBs is a critical factor that enhances DNA end resection. It has been well accepted that the RPA-coated single strand DNA produced by resection is a signaling structure for ATR activation. Therefore, taking advantage of high linear energy transfer (LET) radiation to effectively produce complex DSBs, we investigated how the complexity of DSB influences the function of ATR pathway on the G2/M checkpoint regulation. Human skin fibroblast cells with or without ATM were irradiated with X rays or heavy ion particles, and dual-parameter flow cytometry was used to quantitatively assess the mitotic entry at early period post radiation by detecting the cells positive for phosphor histone H3. In ATM-deficient cells, ATR pathway played a pivotal role and functioned in a dose- and LET-dependent way to regulate the early G2/M arrest even as low as 0.2Gy for heavy ion radiation, which indicated that ATR pathway could be rapidly activated and functioned in an ATM-independent, but DSB complexity-dependent manner following exposure to IR. Furthermore, ATR pathway also functioned more efficiently in ATM-proficient cells to block G2 to M transition at early period of particle radiation exposure. Accordingly, in contrast to ATM inhibitor, ATR inhibitor had a more effective radiosensitizing effect on survival fraction following heavy ion beams as compared with X ray radiation. Taken together, our results reveal that the complexity of DSBs is a crucial factor for the activation of ATR pathway for G2/M checkpoint regulation, and ATM-dependent end resection is not essential for the activation. Copyright © 2014 Elsevier B.V. All rights reserved.

  16. Perbedaan Perlukaan Genitalia Perempuan Berdasarkan Posisi Persetubuhan Diluar Perkawinan di RSUP Dr. M. Djamil Padang Tahun 2010-2012

    Directory of Open Access Journals (Sweden)

    Ami Tri Nursasmi

    2014-05-01

    Full Text Available AbstrakPersetubuhan diluar perkawinan menjadi suatu masalah di pengadilan karena banyaknya perbedaan pendapat mengenai perlukaan selaput dara. Penelitian ini dilakukan untuk membuktikan perbedaan perlukaan selaput dara tersebut yang dilakukan di RSUP Dr. M. Djamil Padang, mencakup karakteristik korban, perlukaan selaput dara, perlukaan dibagian tubuh lain, dan hubungan perlukaan berdasarkan posisi persetubuhan. Penelitian ini bersifat analitik. Sampel sebanyak 81 responden yang telah mengalami persetubuhan diluar perkawinan. Data diambil dari Bagian Forensik RSUP Dr. M. Djamil Padang periode bulan Juli 2010 sampai dengan Juli 2012. Data diolah dengan menggunakan program komputer dan dianalisis melalui uji chi square. Dari 81 subjek penelitian ditemukan hasil tertinggi berupa usia korban adalah 12-18 tahun (62%, pekerjaan sebagai pelajar (56%, alamat berada di Kecamatan Koto Tangah (20%, hubungan korban dengan pelaku sebagai pacar (48%, perlukaan selaput dara pada arah jarum jam selain 5 dan 7 (47%, tidak tampaknya tanda-tanda kekerasan dibagian tubuh lain (81%. Dari uji chi square didapatkan nilai p = 0,585 dengan demikian Ha penelitian ditolak (p>0,05. Penelitian ini dapat disimpulkan bahwa tidak terdapatnya hubungan yang signifikan antara perlukaan selaput dara dengan posisi persetubuhan diluar perkawinan.Kata kunci: Persetubuhan, selaput dara, perlukaanAbstractNon marital sexual activity has been being a big issues on the court because there are contradictions argument about wounded hymen. This research is conducted to prove the difference of that wound occurs in public hospital of dr.M.Djamil Padang, including the victim’s character, hymen’s injury, another injury in other parts body, and the connection of each injuries based on intercourse position. This research having an analitical nature. 81 respondents of sample who done non marital sexual activity. The data taken from Forensics division of RSUP dr.M.Djamil Padang for period of July

  17. Analisis Isi Daya Tarik Pesan Iklan Berdasarkan Elemen Print Ad pada Iklan Sabun Mandi di Majalah Femina

    Directory of Open Access Journals (Sweden)

    Nadya Istighfarina

    2017-07-01

    Full Text Available One of mass media in Indonesia that used for advertising is Femina magazine. The target audience of Femina is women and because of its target audience, so Femina being potential magazine for cosmetics and toiletries product to advertise. One of toiletries product is soap. In copywriting, print ad has an element that consist of headline, subheadline, body copy and ilustration. An advertisement has an appealing point that consist of informational, emotional and combination to attract the readers. The aim of this research is to identify domination of appealing point by print ad element in soap advertisement on Femina magazine period of Jauari 2014- August 2016. Method of this research using quantitative descriptive content analysis. Total object of this research are 27 advertisement. The result of this research showing that domination of using headline in advertisement is provocative headline with percentage 44,44%, advertisement tend to not using subheadline with percentage 51,85%, domination of body copy in advertisement is use picture- caption copy with percentage 48,15%, advertisement tend to using photography ilustration technique with percentage 96,29% and domination of appealing point is using informational appealing point with percentage 48,15%. Salah satu media massa yang terdapat di Indonesia yang digunakan untuk sarana beriklan adalah majalah wanita Femina. Karena target pembaca Femina adalah untuk wanita, maka Femina adalah majalah berpotensial bagi para produk kecantikan dan toiletries untuk beriklan. Salah satu produk toiletries adalah sabun mandi. Dalam penulisan iklan (print ad memiliki elemen yang terdiri dari headline, subheadline, body copy dan ilustrasi serta mengandung suatu daya tarik agar menarik perhatian pembaca yang terdiri dari daya tarik rasional, emosional dan kombinasi. Tujuan penelitian adalah untuk mengetahui dominasi daya tarik pesan berdasarkan elemen print ad pada iklan produk sabun mandi di majalah Femina periode

  18. KLASIFIKASI INTI SEL PAP SMEAR BERDASARKAN ANALISIS TEKSTUR MENGGUNAKAN CORRELATION-BASED FEATURE SELECTION BERBASIS ALGORITMA C4.5

    Directory of Open Access Journals (Sweden)

    Toni Arifin

    2014-09-01

    Full Text Available Abstract - Pap Smear is an early examination to diagnose whether there’s indication cervical cancer or not, the process of observations were done by observing pap smear cell under the microscope. There’s so many research has been done to differentiate between normal and abnormal cell. In this research presents a classification of pap smear cell based on texture analysis. This research is using the Harlev image which amounts to 280 images, 140 images are used as training data and 140 images other are used as testing. On the texture analysis used Gray level Co-occurance Matrix (GLCM method with 5 parameters that is correlation, energy, homogeneity and entropy added by counting the value of brightness. For choose which the best attribute used correlation-based feature selection method and than used C45 algorithm for produce classification rule. The result accuracy of the classification normal and abnormal used decision tree C45 is 96,43% and errors in predicting is 3,57%. Keywords : Classification, Pap Smear cell image, texture analysis, Correlation-based feature selection, C45 algorithm. Abstrak - Pap Smear merupakan pemeriksaan dini untuk mendiagnosa apakah ada indikasi kanker serviks atau tidak, proses pengamatan dilakukan dengan mengamati sel pap smear dibawah mikroskop. Banyak penelitian yang telah dilakukan untuk membedakan antara sel normal dan abnormal. Dalam penelitian ini menyajikan klasifikasi inti sel pap smear berdasarkan analisis tektur. Citra yang digunakan dalam penelitian ini adalah citra Harlev yang berjumlah 280 citra, 140 citra digunakan sebagai data training dan 140 citra lain digunakan sebagai testing. Pada analisis tekstur mengunakan metode Gray level Co-occurrence Matrix (GLCM menggunakan 5 parameter yaitu korelasi, energi, homogenitas dan entropi ditambah dengan menghitung nilai brightness. Untuk memilih mana atribut terbaik digunakan metode correlation-based feature selection lalu digunakan algoritma C45 untuk

  19. Evaluasi Manajemen Keamanan Informasi Menggunakan Indeks Keamanan Informasi (KAMI Berdasarkan ISO/IEC 27001:2013 pada Direktorat Pengembangan Teknologi dan Sistem Informasi (DPTSI ITS Surabaya

    Directory of Open Access Journals (Sweden)

    Firzah Abdullah Basyarahil

    2017-03-01

    Full Text Available DPTSI merupakan sebuah direktorat untuk menangani permasalahan teknologi informasi dan sistem informasi yang dimiliki oleh ITS. Menurut UU. No. 12 Tahun 12 Ttg. Perguruan Tinggi, misi mencari, menemukan, dan menyebarluaskan kebenaran ilmiah tersebut dapat diwujudkan apabila perguruan tinggi di kelola berdasarkan suatu Tata kelola perguruan tinggi yang baik (Good University Governance. Pengelolaan Informasi merupakan salah satu aspek dalam Good University Governance, termasuk kualitas dan keamanan pengelolaan informasi. Salah satu upaya yang dapat dilakukan untuk meningkatkan kualitas dari keamanan informasi, kementrian Kominfo membuat alat bantu untuk mengukur tingkat kematangan dan kelengkapan dalam keamanan informasi yang disebut dengan Indeks Keamanan Informasi (KAMI. Penggunaan Indeks KAMI ini juga diikuti dengan penerapan ISO 27001 sebagai standar keamanan internasional yang dapat membantu sebuah organisasi memastikan bahwa keamanan informasi yang diterapkan sudah efektif. Hasil dari penggunaan Indeks KAMI versi 3.1 di DPTSI ITS ini adalah tingkat ketergantungan penggunaan sistem elektronik sebesar 26 dari total skor 50 dan masuk kedalam kategori Tinggi dimana sistem elektronik adalah bagian yang tidak terpisahkan dari proses kerja yang berjalan. Hasil penilaian kelima area yang telah dilakukan adalah sebesar 249 dari 645 dan berada pada kategori tidak layak. Dari hasil tersebut maka dibuat rekomendasi berdasarkan kontrol ISO 27002:2013 untuk pertanyaan-pertanyaan yang mendapat nilai kurang. Kemudian rekomendasi dari penelitian ini dapat dijadikan sebagai bahan pertimbangan dan evaluasi bagi pihak DPTSI ITS Surabaya dalam melakukan perbaikan yang berkaitan dengan mitigasi atau pencegahan kerentanan keamanan informasi, serta memastikan regulasi dapat dicapai dengan baik dan kebijakan keamanan institusi di masa yang akan datang.

  20. The application of ATR-FTIR spectroscopy and multivariate data analysis to study drug crystallisation in the stratum corneum.

    Science.gov (United States)

    Goh, Choon Fu; Craig, Duncan Q M; Hadgraft, Jonathan; Lane, Majella E

    2017-02-01

    Drug permeation through the intercellular lipids, which pack around and between corneocytes, may be enhanced by increasing the thermodynamic activity of the active in a formulation. However, this may also result in unwanted drug crystallisation on and in the skin. In this work, we explore the combination of ATR-FTIR spectroscopy and multivariate data analysis to study drug crystallisation in the skin. Ex vivo permeation studies of saturated solutions of diclofenac sodium (DF Na) in two vehicles, propylene glycol (PG) and dimethyl sulphoxide (DMSO), were carried out in porcine ear skin. Tape stripping and ATR-FTIR spectroscopy were conducted simultaneously to collect spectral data as a function of skin depth. Multivariate data analysis was applied to visualise and categorise the spectral data in the region of interest (1700-1500cm-1) containing the carboxylate (COO-) asymmetric stretching vibrations of DF Na. Spectral data showed the redshifts of the COO- asymmetric stretching vibrations for DF Na in the solution compared with solid drug. Similar shifts were evident following application of saturated solutions of DF Na to porcine skin samples. Multivariate data analysis categorised the spectral data based on the spectral differences and drug crystallisation was found to be confined to the upper layers of the skin. This proof-of-concept study highlights the utility of ATR-FTIR spectroscopy in combination with multivariate data analysis as a simple and rapid approach in the investigation of drug deposition in the skin. The approach described here will be extended to the study of other actives for topical application to the skin. Copyright © 2016 Elsevier B.V. All rights reserved.

  1. Mutation analysis and characterization of ATR sequence variants in breast cancer cases from high-risk French Canadian breast/ovarian cancer families

    Directory of Open Access Journals (Sweden)

    Pichette Roxane

    2006-09-01

    Full Text Available Abstract Background Ataxia telangiectasia-mutated and Rad3-related (ATR is a member of the PIK-related family which plays, along with ATM, a central role in cell-cycle regulation. ATR has been shown to phosphorylate several tumor suppressors like BRCA1, CHEK1 and TP53. ATR appears as a good candidate breast cancer susceptibility gene and the current study was designed to screen for ATR germline mutations potentially involved in breast cancer predisposition. Methods ATR direct sequencing was performed using a fluorescent method while widely available programs were used for linkage disequilibrium (LD, haplotype analyses, and tagging SNP (tSNP identification. Expression analyses were carried out using real-time PCR. Results The complete sequence of all exons and flanking intronic sequences were analyzed in DNA samples from 54 individuals affected with breast cancer from non-BRCA1/2 high-risk French Canadian breast/ovarian families. Although no germline mutation has been identified in the coding region, we identified 41 sequence variants, including 16 coding variants, 3 of which are not reported in public databases. SNP haplotypes were established and tSNPs were identified in 73 healthy unrelated French Canadians, providing a valuable tool for further association studies involving the ATR gene, using large cohorts. Our analyses led to the identification of two novel alternative splice transcripts. In contrast to the transcript generated by an alternative splicing site in the intron 41, the one resulting from a deletion of 121 nucleotides in exon 33 is widely expressed, at significant but relatively low levels, in both normal and tumoral cells including normal breast and ovarian tissue. Conclusion Although no deleterious mutations were identified in the ATR gene, the current study provides an haplotype analysis of the ATR gene polymorphisms, which allowed the identification of a set of SNPs that could be used as tSNPs for large-scale association

  2. Validation of a χ2 model of HRR target RCS variability and verification of the resulting ATR performance model

    Science.gov (United States)

    Holt, Craig R.; Attili, Joseph B.; Schmidt, Steven L.

    2001-10-01

    A (chi) 2 model for radar cross section (RCS) variability of High Range Resolution (HRR) measurements is validated using compact range data from the U.S. Army National Ground Intelligence Center (NGIC). It is shown that targets can be represented by a mean template and by a variance template, or in this case, an effective number of degrees-of-freedom for the (chi) 2-distribution. The analysis also includes comparison of the measured tails of the RCS distribution to that predicated by the (chi) 2-distribution. The likelihood classifier is obtained, and a Monte Carlo performance model is developed to validate the statistical model at the level of ATR performance.

  3. Analysis of European Honeybee (Apis Mellifera Wings Using ATR-FTIR and Raman Spectroscopy: A Pilot Study

    Directory of Open Access Journals (Sweden)

    Machovič V.

    2017-03-01

    Full Text Available The infrared (ATR-FTIR and Raman spectroscopy was used for the structural characterization of honeybee wings. Protein, chitin, and lipid characteristic spectral features were detected using both methods. The protein secondary structure was predominantly composed of the β-sheet molecular conformation with β-turns or coil contributions. The vibration modes of the side-chain aromatic amino acid residues (tyrosine, phenylalanine, tryptophan occurred in the wing spectra. The results of discriminant analysis showed that the infrared spectroscopy of the wing in combination with a multivariate analysis seemed promising for a resolution of the chemical structure of the wings based on lipid, proteins, and chitin content.

  4. Differentiation and identification of fungi by ATR-FTIR method in a leather collection relating back to Seljuk period

    Directory of Open Access Journals (Sweden)

    Mohsen Mohammadi Achachluei

    2013-01-01

    Full Text Available Introduction: Biodegradation is one of the main degrading factors of leather artifacts. Determination of fungi and other microorganisms has vital importance for conservation of valuable objects made from organic materials. Usual classic techniques for identification of pathogens and fungi have some difficulties, but FTIR spectroscopy has been introduced as useful technique for characterization and determination of microorganisms. Materials and methods: In this study, historic leathers were related to the Seljuk period. The leathers were sampled in laboratory and fungi were cultivated in SDA medium. Genuses of fungi were identified according to macroscopic, microscopic and morphologic characteristics. Microorganisms were analyzed by ATR-FTIR spectrometer and differences of spectral properties were assessed. Spectral properties were assessed according to form and absorption region of peaks. Cluster analysis was used for evaluation of different regions and areas on the measured spectra.Results: Results showed the presence of Penicillium sp. (9 samples, 33.3%, Aspergillus sp. (5 samples, 18.5%, Cladosporium sp. (4 samples, 14.8%, Rhizoctonia sp. (2 samples, 7.4%, Trichophyton sp. (1 sample, 3.7% and also one sample of yeast (3.7%. Two species of fungi remained unidentified (7.4% and there was not any growth in 3 samples (11.1%. Spectral properties indicated to structural differences between microorganisms (fungi, yeast, bacteria. It showed characteristics of fungi genus and species in some cases.Discussion and conclusion: Active fungi induce decomposition, hydrolysis and decay of leather and its vegetable tannins. The decay leads to aesthetic change and health problems. Therefore, it is necessary to remove of fungi and appropriate treatment of leather artifacts. Application of ATR-FTIR spectroscopy had good results for identification of fungi, yeast and bacteria. Assessments showed the potential of ATR-FTIR spectroscopy for easy and rapid

  5. Microstructural examination of V-(3-6%)Cr-(3-5%)Ti irradiated in the ATR-A1 experiment

    Energy Technology Data Exchange (ETDEWEB)

    Gelles, D.S. [Pacific Northwest National Lab., Richland, WA (United States)

    1998-09-01

    Microstructural examination results are reported for four heats of V-(3-6%)Cr-(3-5%)Ti irradiated in the ATR-A1 experiment to {approximately}4 dpa at {approximately}200 and 300 C to provide an understanding of the microstructural evolution that may be associated with degradation of mechanical properties. Fine precipitates were observed in high density intermixed with small defect clusters for all conditions examined following the irradiation. The irradiation-induced precipitation does not appear to be affected by preirradiation heat treatment or composition.

  6. Tip-enhanced near-field optical microscope with side-on and ATR-mode sample excitation for super-resolution Raman imaging of surfaces

    Energy Technology Data Exchange (ETDEWEB)

    Heilman, A. L.; Gordon, M. J. [Department of Chemical Engineering, University of California Santa Barbara, Santa Barbara, California 93106-5080 (United States)

    2016-06-14

    A tip-enhanced near-field optical microscope with side-on and attenuated total reflectance (ATR) excitation and collection is described and used to demonstrate sub-diffraction-limited (super-resolution) optical and chemical characterization of surfaces. ATR illumination is combined with an Au optical antenna tip to show that (i) the tip can quantitatively transduce the optical near-field (evanescent waves) above the surface by scattering photons into the far-field, (ii) the ATR geometry enables excitation and characterization of surface plasmon polaritons (SPPs), whose associated optical fields are shown to enhance Raman scattering from a thin layer of copper phthalocyanine (CuPc), and (iii) SPPs can be used to plasmonically excite the tip for super-resolution chemical imaging of patterned CuPc via tip-enhanced Raman spectroscopy (TERS). ATR-illumination TERS is also quantitatively compared with the more conventional side-on illumination scheme. In both cases, spatial resolution was better than 40 nm and tip on/tip off Raman enhancement factors were >6500. Furthermore, ATR illumination was shown to provide similar Raman signal levels at lower “effective” pump powers due to additional optical energy delivered by SPPs to the active region in the tip-surface gap.

  7. ON-LINE MONITORING OF I&C TRANSMITTERS AND SENSORS FOR CALIBRATION VERIFICATION AND RESPONSE TIME TESTING WAS SUCCESSFULLY IMPLEMENTED AT ATR

    Energy Technology Data Exchange (ETDEWEB)

    Erickson, Phillip A.; O' Hagan, Ryan; Shumaker, Brent; Hashemian, H. M.

    2017-03-01

    The Advanced Test Reactor (ATR) has always had a comprehensive procedure to verify the performance of its critical transmitters and sensors, including RTDs, and pressure, level, and flow transmitters. These transmitters and sensors have been periodically tested for response time and calibration verification to ensure accuracy. With implementation of online monitoring techniques at ATR, the calibration verification and response time testing of these transmitters and sensors are verified remotely, automatically, hands off, include more portions of the system, and can be performed at almost any time during process operations. The work was done under a DOE funded SBIR project carried out by AMS. As a result, ATR is now able to save the manpower that has been spent over the years on manual calibration verification and response time testing of its temperature and pressure sensors and refocus those resources towards more equipment reliability needs. More importantly, implementation of OLM will help enhance the overall availability, safety, and efficiency. Together with equipment reliability programs of ATR, the integration of OLM will also help with I&C aging management goals of the Department of Energy and long-time operation of ATR.

  8. Sobre el iuspositivismo que hemos de dejar atrás. Una crítica iusnaturalista a "Dejemos atrás el positivismo jurídico" de Atienza y de Ruiz Manero

    Directory of Open Access Journals (Sweden)

    JOSÉ CHÁVEZ-FERNÁNDEZ

    2011-01-01

    Full Text Available A través de la confrontación de las tesis más relevantes que Atienza y Ruiz Manero proponen en su artículo "Dejemos atrás el positivismo jurídico", el autor pretende mostrar-a partir de la respuesta a las preguntas "¿qué iuspositivismo hemos de dejar atrás?", "¿por qué?" y "¿cómo?"- que existen en el iuspositivismo debilidades explicativas graves respecto de la realidad jurídica, y que estas están vinculadas tanto al escepticismo ético como a la negación de la existencia de un Derecho natural en sentido propio, es decir, de raigambre antropológico-metafísica. Por otro lado, se tratará de evidenciar que dichas debilidades explicativas le son comunes también a los intentos pragmático-constructivistas de superación del iuspositivismo por lo que, en última instancia, ninguno de dichos esquemas conceptuales puede dar cuenta cabal de una realidad como los derechos humanos que se presentan como deudas ético-jurídicas inexcusables fundamentadas en la dignidad ontológica de todos los seres humanos.

  9. Hasil skrining berdasarkan metode MNA (mini nutritional assestment tidak berpengaruh terhadap lama rawat inap dan status pulang pasien lanjut usia di RSUP Dr. Sardjito Yogyakarta

    Directory of Open Access Journals (Sweden)

    Wahyu Hardi Prasetyo

    2016-08-01

    of result screening during initial hospitalization to discharge status of eldery patients based on MNA method was RR 1.29. This indicated that malnourished patient were at risk for uncovered discharged as much as 1.29 greater than those not malnourhized.Conclusions: There was no impact of screening result in admission to length of stay. There was impact of nutritional status to length of discharged status.KEYWORDS: discharge home, length of stay, nutritional status in initial admission.ABSTRAKLatar belakang: Pertumbuhan penduduk lanjut usia (umur ≥60 tahun meningkat secara cepat pada abad 21 ini, yang pada 2000 di seluruh dunia telah mencapai 425 juta jiwa (± 6,8%. Jumlah ini diperkirakan akan mengalami peningkatan hampir dua kali lipat pada 2025. Di Indonesia, persentase lanjut usia pada 1995 mencapai 7,5%. Dengan meningkatnya angka harapan hidup, jumlah lanjut usia pun akan bertambah banyak. Hal ini terkait dengan perlunya peningkatan pelayanan kesehatan lanjut usia. Pada lanjut usia, masalah gizi erat kaitannya dengan penyakit. Salah satu faktor yang menyebabkan lanjut usia menjadi rawan gizi yaitu peningkatan morbiditas penyakit. Dengan meningkatnya risiko penyakit dan disertai gangguan nutrisi pada lanjut usia, perlu dilakukan identifikasi risiko malnutrisi pada lanjut usia sedini mungkin. Penilaian status gizi awal pasien masuk rumah sakit sangat penting dilakukan secara rutin karena dapat menggambarkan status gizi pasien saat itu, mendeteksi pasien-pasien yang berisiko tinggi, dan membantu mengidentifikasi perawatan gizi secara spesifik pada masing-masing pasien sehingga dukungan nutrisi yang tepat dapat diterapkan untuk meningkatan status gizi pasien.Tujuan: Untuk mengetahui pengaruh hasil skrining awal berdasarkan metode MNA (mini nutritional assessment terhadap lama rawat inap dan status pulang pasien lanjut pada ruang rawat inap penyakit dalam dan saraf di RSUP Dr.Sardjito Yogyakarta.Metode: Jenis penelitian ini adalah penelitian observasional

  10. PENILAIAN KESESUAIAN PERAIRAN UNTUK BUDIDAYA IKAN DALAM KERAMBA JARING APUNG BERDASARKAN MODEL SPASIAL PROPAGASI OMBAK MENDEKATI PANTAI

    Directory of Open Access Journals (Sweden)

    Tarunamulia Tarunamulia

    2016-11-01

    Full Text Available Keberhasilan dan keberlanjutan usaha budidaya ikan dalam keramba jaring apung (KJA tidak terlepas dari tingkat keterlindungan lokasi dari aksi fisik peubah oseanografi fisik. Peubah oseanografi fisik yang paling utama menentukan tingkat keterlindungan lokasi adalah besar dan arah ombak yang datang ke pantai, karena selain berhubungan dengan tingkat kesesuaian lahan pada saat awal penyeleksian lokasi, juga dapat mempengaruhi aspek pengelolaan lebih lanjut setelah pelaksanaan dan pengembangan kegiatan budidaya. Penelitian ini bertujuan untuk menguraikan bentuk hubungan spasial antara perubahan iklim dengan kondisi oseanografi fisik khususnya peubah ombak dalam penilaian kesesuaian lahan untuk budidaya ikan dalam KJA. Penelitian ini menitikberatkan pada analisis spasial ombak untuk berbagai perubahan arah dan kecepatan angin yang mungkin terjadi pada lokasi penelitian. Model spasial tersebut dianalisis dengan memadukan metode analisis spasial dalam SIG dan metode penyelesaian mild-slope untuk model ombak permukaan di perairan pantai (CGWAVE. Evaluasi tingkat kesesuaian lahan dilakukan dengan melihat pengaruh ombak terhadap kondisi perairan yang sedang dan kemungkinan akan diperuntukkan untuk kegiatan budidaya ikan dalam KJA di wilayah pesisir Kabupaten Barru Provinsi Sulawesi Selatan. Model spasial ombak yang dikembangkan dalam penelitian ini menunjukkan bahwa perubahan iklim yang mempengaruhi kondisi ombak akan secara signifikan langsung maupun tidak langsung mempengaruhi status tingkat kesesuaian perairan untuk budidaya ikan dalam KJA di lokasi penelitian. Dari 9.939,0 ha total luas perairan yang layak menurut kriteria kedalaman di Kabupaten Barru, hanya tersisa sekitar 2,9% (296,8 ha yang layak setelah aspek keterlindungan berdasarkan ketinggian ombak diintegrasikan dalam analisis. Hasil penelitian ini pada akhirnya menyarankan perlunya pemahaman yang mendalam mengenai perubahan pola propagasi spasial ombak yang datang ke pantai akibat

  11. Desain Pembelajaran Student’s Conceptual Construction Guider Berdasarkan Kesulitan Mahasiswa Calon Guru Fisika pada Konsep Gerak Parabola

    Directory of Open Access Journals (Sweden)

    Duden Saepuzaman

    2016-12-01

      dan y (vertikal. Kedua, membedakan vektor kecepatan, vektor komponen kecepatan, komponen vektor kecepatan dalam arah x dan y. Ketiga, terfokus pada hapalan rumus waktu yang ditempuh peluru untuk lintasan setengah parabola, tinggi maksimum,jarak terjauh maksimum. Keempat, selalu beranggapan kecepatan akhir benda yang bergerak parabola ketika menyentuh tanah selalu nol. Kelima, kecepatan benda nol di puncak (padahal hanya kecepatan dalam arah vertikal yang nol. Keenam, percepatan dimiliki oleh benda dalam arah x maupun y. Ketujuh, ditemukan beberapa mahasiswa menggunakan aturan sinus cosinus segitiga pada penentuan jarak/ ketinggian dan sebaliknya (padahal penentuan jarak/ketinggian berdasarkan informasi kecepatan. Diduga kuat, proses pembelajaran yang terjadi kurang  memfasilitasi  pengembangan kemampuan berpikir mahasiswa untuk membangun konsepnya sendiri (konstruktivisme. Penelitian ini bertujuan untuk membuat sebuah rancangan pembelajaran yang disebut  Student’s Conceptual Construction Guider. Metode yang digunakan adalah  metode analisis deskriftif. Pemahaman konseptual mahasiswa dievaluasi melalui tes konseptual yang berbentuk  uraian. Hasil penelitian  menunjukkan bahwa pembelajaran Student’s Conceptual Construction Guider dapat memfasilitasi  memfasilitasi  pengembangan kemampuan berpikir mahasiswa untuk membangun konsepnya sendiri  dalam memahami konsep gerak parabola. Kata-kata kunci: Student’s Conceptual Construction Guider , kesulitan mahasiswa , Gerak Parabola

  12. Prediksi Risiko Karies Baru Berdasarkan Konsumsi Pempek pada Anak Usia 1112 Tahun Di Palembang (Tinjauan dengan Cariogram

    Directory of Open Access Journals (Sweden)

    Marlindayanti Marlindayanti

    2014-12-01

    Full Text Available Penyakit rongga mulut yang sering diderita anak adalah karies gigi. Hasil penelitian terdahulu menunjukkan prevalensi karies gigi anak di Palembang sebesar 92,43%. Pempek makanan khas jenis karbohidrat lengket yang dimakan bersama kuahnya (cuko, kebiasaan anak di Palembang mengkonsumsi pempek lebih dari 2 kali sehari. Frekuensi konsumsi karbohidrat yang sering berakibat karies gigi. Kebiasaan anak di Palembang mengkonsumsi pempek merupakan faktor risiko terjadinya karies gigi. Risiko karies gigi perlu diketahui untuk melihat kisaran karies baru yang dapat terjadi. Penelitian ini bertujuan memprediksi risiko terjadinya karies baru berdasarkan frekuensi konsumsi pempek di Palembang. Penelitian ini merupakan penelitian observasional dengan desain cross sectional. Pengambilan sampel menggunakan tekhnik cluster, subjek penelitian sebanyak 305 anak dari 52 SD di Palembang. Pengukuran prediksi risiko karies menggunakan cariogram dengan cara mengumpulkan data survei diet frekuensi konsumsi secara keseluruhan dan frekuensi konsumsi pempek, DMF-T, kapasitas buffer, sekresi saliva, plak skor, program fluor dan penyakit umum. Hasil penelitian menunjukkan prediksi risiko karies anak usia 11-12 tahun di Palembang 65,72% (kategori tinggi kontribusi pempek 45,83% dari total konsumsi makan keseluruhan. Peluang menghindari karies sebesar 34,28%. Urutan penyebab risiko karies adalah kerentanan (31,0%, pola makan (17,36%, bakteri (8,91% dan keadaan lain yang berpengaruh (5,35%. Kesimpulan penelitian, prediksi risiko terjadinya karies baru pada anak usia 11-12 tahun di Palembang termasuk kategori tinggi, pempek menyumbang 45,83% dari total konsumsi keseluruhan. Urutan prediksi risiko karies anak usia 11-12 tahun di Palembang, kerentanan, pola makan, bakteri dan faktor lain yang berpengaruh.    Prediction of The Risk Of New Caries Base on Pempek Consumption on Children Age 11-12 Years Old In Palembang. The oral cavity disease often suffered by children is dental

  13. Desain Didaktis Konsep Gradien Grafik v(t sebagai Percepatan atau Perlambatan berdasarkan Hambatan Belajar Peserta Didik Kelas X SMA

    Directory of Open Access Journals (Sweden)

    Wina Fitria Dewi Marieta

    2016-12-01

    Full Text Available Abstract The procces of making lesson plan should consider the response from the students. If the responses were not well anticipated, it can be a learning obstacles for the students. Therefore, teacher as one of the components in learning proscess and the responsible one in the classroom, should be able to make a didactical design wich can anticipate the emergence of these obstacles. The purpose of this research is to make a didactical design which is arranged based on epistemological obstacles (viewed from the tests of the ability of respondents and didactical obstacles (viewed from learning process in one of the concept in accelerated linera motion, that is gradient of v(t charts as the acceleration or decelerated,  so it can anticipate the apperence of learning obstacles. These are the resumes of didactical design for this concept. At the prainstruksional stage, teacher mentioned the characteristics of s(t and v (t graphs from the previous meetings, while on the instructional stage, it requared a worksheets and a moving man animation. In this section make sure the students understand that gradient on a v (t graphs is acceleration or deceleration trough graph aproachment .This concept given with the group methods  discussions followed by plenary class. Keywords: didactical design, learning obstacle,concept of  gradient on a v(t graphs as acceleration or deceleration Abstrak Ketika proses pembelajaran berlangsung, respon dari peserta didik seringkali muncul. Jika respon ini tidak diantisipasi dengan baik, dapat menjadi hambatan belajar bagi peserta didik. Oleh karena itu, pendidik sebagai salah satu komponen dalam pembelajaran serta sebagai pihak yang bertanggung jawab di dalam kelas harus mampu untuk membuat suatu desain didaktis yang dapat mengantisipasi munculnya hambatan tersebut. Tujuan penelitian ini adalah membuat suatu desain didaktis yang disusun berdasarkan hambatan epistemologis (dilihat dari hasil tes kemampuan responden

  14. In-situ monitoring of blood glucose level for dialysis machine by AAA-battery-size ATR Fourier spectroscopy

    Science.gov (United States)

    Hosono, Satsuki; Sato, Shun; Ishida, Akane; Suzuki, Yo; Inohara, Daichi; Nogo, Kosuke; Abeygunawardhana, Pradeep K.; Suzuki, Satoru; Nishiyama, Akira; Wada, Kenji; Ishimaru, Ichiro

    2015-07-01

    For blood glucose level measurement of dialysis machines, we proposed AAA-battery-size ATR (Attenuated total reflection) Fourier spectroscopy in middle infrared light region. The proposed one-shot Fourier spectroscopic imaging is a near-common path and spatial phase-shift interferometer with high time resolution. Because numerous number of spectral data that is 60 (= camera frame rare e.g. 60[Hz]) multiplied by pixel number could be obtained in 1[sec.], statistical-averaging improvement realize high-accurate spectral measurement. We evaluated the quantitative accuracy of our proposed method for measuring glucose concentration in near-infrared light region with liquid cells. We confirmed that absorbance at 1600[nm] had high correlations with glucose concentrations (correlation coefficient: 0.92). But to measure whole-blood, complex light phenomenon caused from red blood cells, that is scattering and multiple reflection or so, deteriorate spectral data. Thus, we also proposed the ultrasound-assisted spectroscopic imaging that traps particles at standing-wave node. Thus, if ATR prism is oscillated mechanically, anti-node area is generated around evanescent light field on prism surface. By elimination complex light phenomenon of red blood cells, glucose concentration in whole-blood will be quantify with high accuracy. In this report, we successfully trapped red blood cells in normal saline solution with ultrasonic standing wave (frequency: 2[MHz]).

  15. A new integrated TLC/MU-ATR/SERS advanced approach for the identification of trace amounts of dyes in mixtures.

    Science.gov (United States)

    Sciutto, Giorgia; Prati, Silvia; Bonacini, Irene; Litti, Lucio; Meneghetti, Moreno; Mazzeo, Rocco

    2017-10-23

    The present research is focused on the setting up of an advanced analytical system for the detection of synthetic dyes. The system is based on the combination of an innovative thin layer chromatography (TLC) plate coupled with enhanced infrared (MU-ATR, metal underlayer attenuated total reflection) and Surface Enhanced Raman (SERS) spectroscopy. In particular, a TLC plate made of silver iodide (AgI) applied onto a gold coated glass slide (AgI@Au) is proposed as an efficient stationary phase for the separation of dyes mixtures. The separated dyes are then identified by means of both enhanced FTIR and SERS, performed directly on the same eluted spots. The use of a mid-IR transparent inorganic salt as stationary phase coupled with the underneath gold layer avoids spectral interferences, enhancing the signal obtained from ATR analyses. At the same time, SERS spectra can be recorded as the TLC plate may act as a SERS active substrate due to the photoreduction of AgI to metallic Ag caused by the exposure to the laser during the Raman analysis. Different mixtures of synthetic dyes of known composition, widely used in dyeing processes, have been tested and the method resulted to be effective in identifying trace amounts in the order of tens nanograms. Moreover, the method has been further evaluated on a real case study represented by dyes extracted from dyed wool. Copyright © 2017 Elsevier B.V. All rights reserved.

  16. Splicing mutation in the ATR-X gene can lead to a dysmorphic mental retardation phenotype without {alpha}-thalassemia

    Energy Technology Data Exchange (ETDEWEB)

    Villard, L.; Lossi, A.M.; Fontes, M. [and others

    1996-03-01

    We have previously reported the isolation of a gene from Xq13 that codes for a putative regulator of transcription (XNP) and has now been shown to be the gene involved in the X-linked {alpha}-thalassemia with mental retardation (ATR-X) syndrome. The widespread expression and numerous domains present in the putative protein suggest that this gene could be involved in other phenotypes. The predominant expression of the gene in the developing brain, as well as its association with neuron differentiation, indicates that mutations of this gene might result in a mental retardation (MR) phenotype. In this paper we present a family with a splice junction mutation in XNP that results in the skipping of an exon and in the introduction of a stop codon in the middle of the XNP-coding sequence. Only the abnormal transcript is expressed in two first cousins presenting the classic ATR-X phenotype (with {alpha}-thalassemia and HbH inclusions). In a distant cousin presenting a similar dysmorphic MR phenotype but not having thalassemia, {approximately}30% of the XNP transcripts are normal. These data demonstrate that the mode of action of the XNP gene product on globin expression is distinct from its mode of action in brain development and facial morphogenesis and suggest that other dysmorphic mental retardation phenotypes, such as Juberg-Marsidi or some sporadic cases of Coffin-Lowry, could be due to mutations in XNP. 20 refs., 5 figs., 2 tabs.

  17. Simultaneous ATR-FTIR Based Determination of Malaria Parasitemia, Glucose and Urea in Whole Blood Dried onto a Glass Slide.

    Science.gov (United States)

    Roy, Supti; Perez-Guaita, David; Andrew, Dean W; Richards, Jack S; McNaughton, Don; Heraud, Philip; Wood, Bayden R

    2017-05-16

    New diagnostic tools that can detect malaria parasites in conjunction with other diagnostic parameters are urgently required. In this study, Attenuated Total Reflection Fourier transform infrared (ATR-FTIR) spectroscopy in combination with Partial Least Square Discriminant Analysis (PLS-DA) and Partial Least Square Regression (PLS-R) have been applied as a point-of-care test for identifying malaria parasites, blood glucose, and urea levels in whole blood samples from thick blood films on glass slides. The specificity for the PLS-DA was found to be 98% for parasitemia levels >0.5%, but a rather low sensitivity of 70% was achieved because of the small number of negative samples in the model. In PLS-R the Root Mean Square Error of Cross Validation (RMSECV) for parasite concentration (0-5%) was 0.58%. Similarly, for glucose (0-400 mg/dL) and urea (0-250 mg/dL) spiked samples, relative RMSECVs were 16% and 17%, respectively. The method reported here is the first example of multianalyte/disease diagnosis using ATR-FTIR spectroscopy, which in this case, enabled the simultaneous quantification of glucose and urea analytes along with malaria parasitemia quantification using one spectrum obtained from a single drop of blood on a glass microscope slide.

  18. ATR FT-IR spectroscopy on Vmh2 hydrophobin self-assembled layers for Teflon membrane bio-functionalization

    Energy Technology Data Exchange (ETDEWEB)

    Portaccio, M., E-mail: marianna.portaccio@unina2.it [Dipartimento di Medicina Sperimentale – Seconda Università di Napoli, Via S.M. di Costantinopoli, 16-80134 Napoli (Italy); Gravagnuolo, A.M., E-mail: alfredomaria.gravagnuolo@unina.it [Dipartimento di Scienze Chimiche, Università “Federico II”, Via Cintia, 21- 80126 Napoli (Italy); Longobardi, S., E-mail: sara.longobardi@unina.it [Dipartimento di Scienze Chimiche, Università “Federico II”, Via Cintia, 21- 80126 Napoli (Italy); Giardina, P., E-mail: paola.giardina@unina.it [Dipartimento di Scienze Chimiche, Università “Federico II”, Via Cintia, 21- 80126 Napoli (Italy); Rea, I., E-mail: ilaria.rea@na.imm.cnr.it [Institute for Microelectronics and Microsystems, CNR, Via P. Castellino, 111-80131 Napoli (Italy); De Stefano, L., E-mail: luca.destefano@na.imm.cnr.it [Institute for Microelectronics and Microsystems, CNR, Via P. Castellino, 111-80131 Napoli (Italy); Cammarota, M., E-mail: marcella.cammarota@unina2.it [Dipartimento di Medicina Sperimentale – Seconda Università di Napoli, Via S.M. di Costantinopoli, 16-80134 Napoli (Italy); Lepore, M., E-mail: maria.lepore@unina2.it [Dipartimento di Medicina Sperimentale – Seconda Università di Napoli, Via S.M. di Costantinopoli, 16-80134 Napoli (Italy)

    2015-10-01

    Graphical abstract: - Highlights: • Hydrophobin self-assembled layers on Teflon in different preparation conditions were investigated. • ATR collection data geometry allowed samples examination without any particular preparation. • Amide content, lipid/amide and carbohydrate/amide ratios of the protein layer were estimated. • Secondary structure of protein was determined for the examined samples. • FT-IR demonstrated to be of extreme relevance in monitoring hydrophobin self-assembled layers preparation. - Abstract: Surface functionalization by layers of hydrophobins, amphiphilic proteins produced by fungi offers a promising and green strategy for fabrication of biomedical and bioanalytical devices. The layering process of the Vmh2 hydrophobin from Pleurotus ostreatus on Teflon membrane has been investigated by Attenuated Total Reflection Fourier Transform Infrared (ATR FT-IR) spectroscopy. In particular, protein layers obtained with hydrophobin purified with two different procedures and in various coating conditions have been examined. The layers have been characterized by quantifying the amide I and amide II band area together with the lipid/amide ratio and carbohydrate/amide ratio. This characterization can be very useful in evaluating the best purification strategy and coating conditions. Moreover the analysis of the secondary structure of the layered protein using the deconvolution procedure of amide I band indicate the prevalent contribution from β-sheet state. The results inferred by infrared spectroscopy have been also confirmed by scanning electron microscopy imaging.

  19. Characterization of Satsuma mandarin (Citrus unshiu Marc.) nectar-to-honey transformation pathway using FTIR-ATR spectroscopy.

    Science.gov (United States)

    Svečnjak, Lidija; Prđun, Saša; Rogina, Josip; Bubalo, Dragan; Jerković, Igor

    2017-10-01

    Samples of Satsuma mandarin (Citrus unshiu Marc.) nectar, honey sac content and honey were analyzed by FTIR-ATR spectroscopy and reference methods. The spectral analysis allowed detection of the major chemical constituents in C. unshiu nectar-to-honey transformation pathway thus providing information on the intensity and location of the compositional changes occurring during this process. The preliminary results showed that in average more than one-third of sugar-related nectar-to-honey conversion takes place directly in the honey sac; the average sugar content (w/w) was 17.93% (nectar), 47.03% (honey sac) and 79.63% (honey). FTIR-ATR results showed great spectral similarity of analyzed honey samples and small degree variations in both sugar and water content in nectar samples. The spectral data revealed distinctive differences in the chemical composition of individual honey sac contents with the most intensive and complex absorption envelope in the spectral region between 1175 and 950cm -1 (glucose, fructose and sucrose absorption bands). Copyright © 2017 Elsevier Ltd. All rights reserved.

  20. Cocaine profiling: Implementation of a predictive model by ATR-FTIR coupled with chemometrics in forensic chemistry.

    Science.gov (United States)

    Materazzi, Stefano; Gregori, Adolfo; Ripani, Luigi; Apriceno, Azzurra; Risoluti, Roberta

    2017-05-01

    In this study, a strategy based on Infrared Spectroscopy with Fourier Transformed and Attenuated Total Reflectance associated with chemometrics (ATR-FTIR) is proposed to identify the chemical "fingerprint" of cocaine samples. To this end, standard mixtures of cocaine and cuttings at differents ratio were investigated in order to develop a multivariate classification model to simultaneously predict the composition of the samples and to obtain a profile of adulteration of cocaine seizures. In addition, the application of a Partial Least Squares (PLS) and Principal Component Regression (PCR) calibration approaches were found to be a useful tool to predict the content of cocaine, caffeine, procaine, lidocaine and phenacetin in drug seizures. The achieved results on real confiscated samples, in cooperation with the Italian Scientific Investigation Department (Carabinieri-RIS) of Rome, allow to consider ATR-FTIR followed to chemometrics as a promising forensic tool in such situations involving profile comparisons and supporting forensic investigations. Copyright © 2017 Elsevier B.V. All rights reserved.

  1. Prediction of peroxide value in omega-3 rich microalgae oil by ATR-FTIR spectroscopy combined with chemometrics.

    Science.gov (United States)

    Cebi, Nur; Yilmaz, Mustafa Tahsin; Sagdic, Osman; Yuce, Hande; Yelboga, Emrah

    2017-06-15

    Our work explored, for the first time, monitoring peroxide value (PV) of omega-3 rich algae oil using ATR-FTIR spectroscopic technique. The PV of the developed method was compared by that obtained by standard method of Association of Official Analytical Chemists (AOAC). In this study, peak area integration (PAI), Partial Least Squares Regression (PLSR), and Principal Component Regression (PCR) were used as the calibration techniques. PV obtained by the AOAC method and by FTIR-ATR technique were well correlated considering the peak area related to trans double bonds and chemometrics techniques of PLSR and PCR. Calibration model was established using the band with a peak point at 966cm-1 (990-940cm-1) related to CH out of plane deformation vibration of trans double bond. Algae oil oxidation could be successfully quantified using PAI, PLSR and PCR techniques. Additionally, hierarchical cluster analysis was performed and significant discrimination was observed coherently with oxidation process. Copyright © 2017 Elsevier Ltd. All rights reserved.

  2. ATR-IR fingerprinting as a powerful method for identification of traditional medicine samples: a report of 20 herbal patterns

    Directory of Open Access Journals (Sweden)

    A. Sakhteman

    2015-06-01

    Full Text Available Background and objectives: Attenuated total reflectance-inferared (ATR-IR spectra can be used as a non-invasive fingerprinting approach in quality control of herbal samples. Methods: Twenty versatile herbal samples were subjected to attenuated total reflectance-inferared (ATR-IR spectroscopy followed by different clustering methods in order to determine by which method more reasonable classifications would be obtained. Results: All classification methods (K-means, HCA, PCA and SOM were able to discriminate the two medicinal seeds, Hyocyamus niger and Peganum harmala from other herbal samples. Similarly, the starch samples were clustered in a reasonable method. In HCA, one cluster included three types of starch samples: Zea mays, Oryza sativa and Triticum aestivum. All the four classification methods were able to separate Solanum tuberosum starch from other starch samples. HCA and SOM, were able to classify leaf samples Origanum vulgare and Melissa officinalis belonging to Lamiaceae family, in one category. Crocus sativus and its adulterant Carthamus tinctorius flowers were identified by PCA, HCA and SOM as different categories. Conclusion: The result of this study can be utilized for identification and quality control of traditionally used medicinal plant samples in an unknown sample powder. Such data could be the basis for preparing a data bank on Iranian medicinal samples which in turn is used as a simple, fast and reliable method for characterization of herbal powders in Pharmacopoeias.

  3. Characterization of postmortem biochemical changes in rabbit plasma using ATR-FTIR combined with chemometrics: A preliminary study

    Science.gov (United States)

    Zhang, Ji; Li, Bing; Wang, Qi; Li, Chengzhi; Zhang, Yinming; Lin, Hancheng; Wang, Zhenyuan

    2017-02-01

    Postmortem interval (PMI) determination is one of the most challenging tasks in forensic medicine due to a lack of accurate and reliable methods. It is especially difficult for late PMI determination. Although many attempts with various types of body fluids based on chemical methods have been made to solve this problem, few investigations are focused on blood samples. In this study, we employed an attenuated total reflection (ATR)-Fourier transform infrared (FTIR) technique coupled with principle component analysis (PCA) to monitor biochemical changes in rabbit plasma with increasing PMI. Partial least square (PLS) model was used based on the spectral data for PMI prediction in an independent sample set. Our results revealed that postmortem chemical changes in compositions of the plasma were time-dependent, and various components including proteins, lipids and nucleic acids contributed to the discrimination of the samples at different time points. A satisfactory prediction within 48 h postmortem was performed by the combined PLS model with a good fitting between actual and predicted PMI of 0.984 and with an error of ± 1.92 h. In consideration of the simplicity and portability of ATR-FTIR, our preliminary study provides an experimental and theoretical basis for application of this technique in forensic practice.

  4. Hepatitis B virus X protein via the p38MAPK pathway induces E2F1 release and ATR kinase activation mediating p53 apoptosis.

    Science.gov (United States)

    Wang, Wen-Horng; Hullinger, Ronald L; Andrisani, Ourania M

    2008-09-12

    Hepatitis B virus (HBV) X protein (pX) is implicated in hepatocellular carcinoma (HCC) pathogenesis by an unknown mechanism. Deletions or mutations of genes involved in the p53 pathway are often associated with HBV-mediated HCC, indicating rescue from p53 apoptosis is a likely mechanism in HBV-HCC pathogenesis. Herein, we determined the mechanism by which pX sensitizes hepatocytes to p53-mediated apoptosis. Although it is well established that the Rb/E2F/ARF pathway stabilizes p53, and the DNA damage-activated ATM/ATR kinases activate p53, the mechanism that coordinates these two pathways has not been determined. We demonstrate that the p38MAPK pathway activated by pX serves this role in p53 apoptosis. Specifically, the activated p38MAPK pathway stabilizes p53 via E2F1-mediated ARF expression, and also activates the transcriptional function of p53 by activating ATR. Knockdown of p53, E2F1, ATR, or p38MAPKalpha abrogates pX-mediated apoptosis, demonstrating that E2F1, ATR, and p38MAPKalpha are all essential in p53 apoptosis in response to pX. Specifically, in response to pX expression, the p38MAPK pathway activates Cdk4 and Cdk2, leading to phosphorylation of Rb, release of E2F1, and transcription of ARF. The p38MAPK pathway also activates ATR, leading to phosphorylation of p53 on Ser-18 and Ser-23, transcription of pro-apoptotic genes Bax, Fas, and Noxa, and apoptosis. In conclusion, pX sensitizes hepatocytes to p53 apoptosis via activation of the p38MAPK pathway, which couples p53 stabilization and p53 activation, by E2F1 induction and ATR activation, respectively.

  5. Hepatitis B Virus X Protein via the p38MAPK Pathway Induces E2F1 Release and ATR Kinase Activation Mediating p53 Apoptosis*S⃞

    Science.gov (United States)

    Wang, Wen-Horng; Hullinger, Ronald L.; Andrisani, Ourania M.

    2008-01-01

    Hepatitis B virus (HBV) X protein (pX) is implicated in hepatocellular carcinoma (HCC) pathogenesis by an unknown mechanism. Deletions or mutations of genes involved in the p53 pathway are often associated with HBV-mediated HCC, indicating rescue from p53 apoptosis is a likely mechanism in HBV-HCC pathogenesis. Herein, we determined the mechanism by which pX sensitizes hepatocytes to p53-mediated apoptosis. Although it is well established that the Rb/E2F/ARF pathway stabilizes p53, and the DNA damage-activated ATM/ATR kinases activate p53, the mechanism that coordinates these two pathways has not been determined. We demonstrate that the p38MAPK pathway activated by pX serves this role in p53 apoptosis. Specifically, the activated p38MAPK pathway stabilizes p53 via E2F1-mediated ARF expression, and also activates the transcriptional function of p53 by activating ATR. Knockdown of p53, E2F1, ATR, or p38MAPKα abrogates pX-mediated apoptosis, demonstrating that E2F1, ATR, and p38MAPKα are all essential in p53 apoptosis in response to pX. Specifically, in response to pX expression, the p38MAPK pathway activates Cdk4 and Cdk2, leading to phosphorylation of Rb, release of E2F1, and transcription of ARF. The p38MAPK pathway also activates ATR, leading to phosphorylation of p53 on Ser-18 and Ser-23, transcription of pro-apoptotic genes Bax, Fas, and Noxa, and apoptosis. In conclusion, pX sensitizes hepatocytes to p53 apoptosis via activation of the p38MAPK pathway, which couples p53 stabilization and p53 activation, by E2F1 induction and ATR activation, respectively. PMID:18606816

  6. Interactions of Human Mismatch Repair Proteins MutSα and MutLα with Proteins of the ATR-Chk1 Pathway*

    Science.gov (United States)

    Liu, Yiyong; Fang, Yanan; Shao, Hongbing; Lindsey-Boltz, Laura; Sancar, Aziz; Modrich, Paul

    2010-01-01

    At clinically relevant doses, chemotherapeutic SN1 DNA methylating agents induce an ATR-mediated checkpoint response in human cells that is dependent on functional MutSα and MutLα. Deficiency of either mismatch repair activity renders cells highly resistant to this class of drug, but the mechanisms linking mismatch repair to checkpoint activation have remained elusive. In this study we have systematically examined the interactions of human MutSα and MutLα with proteins of the ATR-Chk1 pathway using both nuclear extracts and purified proteins. Using nuclear co-immunoprecipitation, we have detected interaction of MutSα with ATR, TopBP1, Claspin, and Chk1 and interaction of MutLα with TopBP1 and Claspin. We were unable to detect interaction of MutSα or MutLα with Rad17, Rad9, or replication protein A in the extract system. Use of purified proteins confirmed direct interaction of MutSα with ATR, TopBP1, and Chk1 and of MutLα with TopBP1. MutSα-Claspin and MutLα-Claspin interactions were not demonstrable with purified proteins, suggesting that extract interactions are indirect or depend on post-translational modification. Use of a modified chromatin immunoprecipitation assay showed that proliferating cell nuclear antigen, ATR, TopBP1, and Chk1 are recruited to chromatin in a MutLα- and MutSα-dependent fashion after N-methyl-N′-nitro-N-nitrosoguanidine treatment. However, chromatin enrichment of replication protein A, Claspin, Rad17-RFC, and Rad9-Rad1-Hus1 was not detected in these experiments. Although our failure to observe enrichment of the latter activities could be due to sensitivity limitations, these observations may indicate a novel mechanism for ATR activation. PMID:20029092

  7. PERBEDAAN PENINGKATAN KETERAMPILAN MENULIS PUISI DENGAN MODEL SINEKTIK DAN PROJECT BASED LEARNING BERDASARKAN TIPE KEPRIBADIAN PESERTA DIDIK KELAS V SEKOLAH DASAR

    Directory of Open Access Journals (Sweden)

    Elvina -

    2015-06-01

    Full Text Available Keterampilan menulis puisi belum mendapatkan hasil yang optimal karena guru kurang memperhatikan model, media dan kepribadian setiap siswa mempengaruhi cara belajar. Karenanya, dibutuhkan model pembelajaran sinektik dan model Project Based Learning (PjBL. Tujuan penelitian ini adalah (1 menentukan peningkatan keterampilan menulis puisi model sinektik berdasarkan tipe kepribadian peserta didik kelas V sekolah dasar; (2 menentukan peningkatan keterampilan menulis puisi model PjBL berdasarkan tipe kepribadian peserta didik kelas V sekolah dasar; (3 menjelaskan interaksi keefektifan antara model sinektik dan PjBL untuk meningkatkan keterampilan menulis puisi berdasarkan tipe kepribadian kelas V peserta didik sekolah dasar.Metode penelitian ini adalah eksperimen.Teknik analisis data menggunakan anava dua jalur.Sampel penelitian ini adalah siswa kelas V SDN Plalangan 01 dan SDN Bendan Ngisor.Pengumpulan data tes melalui keterampilan menulis puisi dan tes kepribadian introver dan ekstrover.Pengumpulan data nontes melalui observasi dan dokumentasi foto.Hasil penelitian perlakuan model sinektik berkepribadian ekstrover lebih tinggi daripada berkepribadian introver yaitu 23,74> 21,35. Sedangkan model PjBL berkepribadian ekstrover lebih tinggi daripada berkepribadian introver yaitu 19,22> 16,24. Keterampilan menulis puisi yang mendapatkan perlakuan model sinektik lebih efektif dari pada model PjBL yakni 22,61> 17,80.Saran penelitian ini adalah memperhatikan tipe kepribadian saat proses pembelajaran. Poetry writing skills have yet to get optimal results, because the teacher less model and affect the way each student learns. Therefore, learning model sinektik and model of Project Based Learning (PjBL. The purpose of this (1 determine the improvement of writing skills of poetry sinektik model based on personality types learners class V primary school; (2 determine the improvement of writing skills of poetry based on the execution model of personality types

  8. Analisis Vegetasi Strata Semak Berdasarkan Cluster Lingkungan Abiotik di Sempadan Sungai Tepus Sleman, Yogyakarta sebagai Sumber Belajar Biologi SMA Kelas X

    Directory of Open Access Journals (Sweden)

    Trikinasih Handayani

    2014-05-01

    Full Text Available Penelitian ini bertujuan untuk mengetahui jenis-jenis strata semak yang memiliki peranan paling besar berdasarkan indeks nilai pentingnya, indeks diversitas jenis-jenis strata semak, dan hubungan antara faktor lingkungan abiotik yang terukur meliputi: kelembaban udara, suhu udara, suhu tanah, pH tanah, unsur N,unsur P, unsur K, dan KPK tanah dengan pola pengelompokkan stand vegetasi strata semak di sempadan Sungai Tepus Sleman, Yogyakarta, serta untuk mengetahui apakah proses dan hasil penelitian analisis vegetasi strata semak berdasarkan cluster lingkungan abiotik di sempadan Sungai Tepus Sleman, Yogyakarta, memiliki potensi sebagai sumber belajar biologi SMA kelas X pada materi pembelajaran struktur dan fungsi ekosistem terestrial.Pengamatan terhadap jenis-jenis strata semak menggunakan metode point centered quarter. Lokasi penelitian dilakukan di sepanjang sempadan Sungai Tepus Sleman, Yogyakarta, dengan masing-masing luas area kajian 383.333 m2. Setiap area kajian di buat 20 stand, dan setiap stand diletakkan garis transek utama sepanjang 300 m, selanjutnya dibuat 10 titik sampling yang memotong transek utama yang berjarak masing-masing 30 m. Metode analisis cluster bertujuan untuk mengetahui hubungan antara faktor lingkungan abiotik yang terukur dengan pola pengelompokkan stand vegetasi strata semak di sempadan Sungai Tepus Sleman, Yogyakarta. Penghitungan metode ini dibantu dengan program SPSS versi 16.Hasil penelitian menunjukkan bahwa di sempadan Sungai Tepus Sleman, Yogyakarta telah ditemukan 19 jenis strata semak. Jenis-jenis strata semak yang memiliki rerata INP tertinggi yaitu Bambusa sp. 120,77%, Musa paradisiaca L. 67,92%, dan Manihot utillissima Pohl. 30,07%. Indeks diversitas jenis-jenis strata semak yaitu 0,54. Berdasarkan analisis cluster dapat dikelompokkan menjadi dua cluster. Faktor lingkungan abiotik yang berkaitan dengan pola pengelompokkan stand vegetasi strata semak yaitu suhu udara, unsur nitrogen (N, unsur

  9. Development of C-lignin with G/S-lignin and lipids in orchid seed coats – an unexpected diversity exposed by ATR-FT-IR spectroscopy

    DEFF Research Database (Denmark)

    Barsberg, Søren Talbro; Lee, Y-I; Rasmussen, Hanne Nina

    2018-01-01

    Cite this article: Barsberg ST, Lee Y-I, Rasmussen HN. Development of C-lignin with G/S-lignin and lipids in orchid seed coats – an unexpected diversity exposed by ATR-FT-IR spectroscopy. Seed Science Research https:// doi.org/10.1017/S0960258517000344......Cite this article: Barsberg ST, Lee Y-I, Rasmussen HN. Development of C-lignin with G/S-lignin and lipids in orchid seed coats – an unexpected diversity exposed by ATR-FT-IR spectroscopy. Seed Science Research https:// doi.org/10.1017/S0960258517000344...

  10. In Vivo and In Vitro Effects of ATM/ATR Signaling Pathway on Proliferation, Apoptosis, and Radiosensitivity of Nasopharyngeal Carcinoma Cells.

    Science.gov (United States)

    Wang, Ming; Liu, Gang; Shan, Guo-Ping; Wang, Bing-Bing

    2017-08-01

    The study investigated the ability of ataxia-telangiectasia mutated (ATM)/Rad3-related (ATR) signaling pathway to influence the proliferation, apoptosis, and radiosensitivity of nasopharyngeal carcinoma (NPC) cells. NPC tissues and corresponding adjacent normal tissues were collected from 143 NPC patients. The NPC CNE2 cells were assigned into a control group, X-ray group, CGK-733 group, and X-ray+CGK-733 group. The mRNA levels of ATM and ATR were evaluated using quantitative real-time polymerase chain reaction (qRT-PCR) and the protein levels of ATM and ATR using western blotting. The positive expression of ATM and ATR in tissues and nude mouse tumor tissues was determined by immunohistochemistry. Cell proliferation, migration, invasion, and apoptosis rates were analyzed by the 3-(4,5)-dimethylthiahiazo (-z-y1)-3,5-di- phenytetrazoliumromide (MTT) assay, scratch test, transwell assay, and flow cytometry, respectively. A nude mouse model of NPC was established to observe tumor volume and growth. The mRNA levels of ATR and ATM and the expression of ATR and ATM protein in NPC tissues were significantly higher than those in adjacent normal tissues. The colony formation assay showed that the colony-forming rate decreased, showing radiation dose-dependent and CGK-733 concentration-dependent manners. Expression of ATM, ATR, Chk1, and Chk2 was evidently increased in the X-ray, CGK-733, and X-ray+CGK-733groups compared with the control group, and the aforementioned expression was highest in the X-ray+CGK-733 group among the four groups. The cell proliferation, invasion, and migration were decreased, tumor volume decreased and cell apoptosis increased in the X-ray, CGK-733, and X-ray+CGK-733 groups compared with the control group; the X-ray+CGK-733 group exhibited lowest cell proliferation, invasion and migration, smallest tumor volume, and highest cell apoptosis among the four groups. Inhibition of ATM/ATR signaling pathway reduces proliferation and enhances apoptosis and

  11. A new Density Functional Theory (DFT) based method for supporting the assignment of vibrational signatures of mannan and cellulose—Analysis of palm kernel cake hydrolysis by ATR-FT-IR spectroscopy as a case study

    DEFF Research Database (Denmark)

    Barsberg, Søren Talbro; Sanadi, Anand Ramesh; Jørgensen, Henning

    2011-01-01

    Attenuated Total Reflectance (ATR) FT-IR spectroscopy gives in situ information on molecular concentration, organization and interactions in plant cell walls. We demonstrate its potential for further developments by a case study which combines ATR-FT-IR spectroscopy with a recently published DFT ...

  12. ANALISIS TATA KELOLA OPTIMALISASI SUMBER DAYA SISTEM INFORMASI MANAJEMEN JEMBATAN TIMBANG (EDM04 BERDASARKAN KERANGKA KERJA COBIT 5 PADA DINAS PERHUBUNGAN KOMUNIKASI DAN INFORMATIKA PROVINSI JAWA TENGAH

    Directory of Open Access Journals (Sweden)

    Yudistira Dian Hastiti

    2016-06-01

    Full Text Available Dinas Perhubungan Komunikasi dan Informatika (Dinhubkominfo Provinsi Jawa tengah sebagai perumus dan pelaksana kebijakan teknis, fasilitator, dan evaluator terkait penyelengaraan kegiatan penimbangan kendaraan bermotor melalui 16 jembatan timbang yang tersebar di wilayah provinsi jawa tengah telah mengimplementasikan sebuah system yang dipergunakan untuk kemudahan dalam menimbang kendaraan dengan mendata setiap kendaraan pada suatu system yang disebut Sistem Informasi Manajemen Jembatan Timbang (SIM JT. Masalah yang ditemukan saat ini yaitu, melihat padatnya antrian panjang kendaraan yang akan ditimbang disebabkan karena SIM JT yang belum memiliki database identitas kendaraan dan tidak dapat terpantau secara real time yang terjadi saat local server dalam keadaan down. Berdasarkan hal tersebut Dinhubkominfo berupaya mengoptimalkan kinerja SIM JT baik dari segi sumber daya manajemen manusia, TI, serta keuangan untuk meminimalkan kesalahan serta meningkatkan efektifitas pelayanan. Dari hasil studi dokumen, wawancara, dan kuesioner  berdasarkan COBIT 5 menghasilkan tingkat kapabilitas tata kelola proses optimalisasi sumer daya (EDM04 pada Dinas Perhubungan Komunikasi dan Informatika Provinsi Jawa Tengah saat ini berada di level 3 dengan status pencapaian Largely Achieved sebesar 80,18% setara dengan 3,80 dimana level 0, 1, dan 2 mencapai status Fully Achieved. Hal ini menunjukan telah mengelola dengan baik proses optimalisasi sumber daya dan diimplementasikan untuk mendukung pengerjaan proses standar dan efektif. Untuk mencapai tingkat target, Dinhubkominfo dapat melakukan strategi perbaikan dengan memperhatikan secara bertahap dari proses atribut level 1 sampai 4 Kata Kunci: Analisis Tata Kelola TI, COBIT 5, Sistem Informasi Manajemen Jembatan Timbang, Analisis Tingkat Kapabilitas, Analisis Kesenjangan.

  13. Dynamic dependence on ATR and ATM for double-strand break repair in human embryonic stem cells and neural descendants.

    Directory of Open Access Journals (Sweden)

    Bret R Adams

    2010-04-01

    Full Text Available The DNA double-strand break (DSB is the most toxic form of DNA damage. Studies aimed at characterizing DNA repair during development suggest that homologous recombination repair (HRR is more critical in pluripotent cells compared to differentiated somatic cells in which nonhomologous end joining (NHEJ is dominant. We have characterized the DNA damage response (DDR and quality of DNA double-strand break (DSB repair in human embryonic stem cells (hESCs, and in vitro-derived neural cells. Resolution of ionizing radiation-induced foci (IRIF was used as a surrogate for DSB repair. The resolution of gamma-H2AX foci occurred at a slower rate in hESCs compared to neural progenitors (NPs and astrocytes perhaps reflective of more complex DSB repair in hESCs. In addition, the resolution of RAD51 foci, indicative of active homologous recombination repair (HRR, showed that hESCs as well as NPs have high capacity for HRR, whereas astrocytes do not. Importantly, the ATM kinase was shown to be critical for foci formation in astrocytes, but not in hESCs, suggesting that the DDR is different in these cells. Blocking the ATM kinase in astrocytes not only prevented the formation but also completely disassembled preformed repair foci. The ability of hESCs to form IRIF was abrogated with caffeine and siRNAs targeted against ATR, implicating that hESCs rely on ATR, rather than ATM for regulating DSB repair. This relationship dynamically changed as cells differentiated. Interestingly, while the inhibition of the DNA-PKcs kinase (and presumably non-homologous endjoining [NHEJ] in astrocytes slowed IRIF resolution it did not in hESCs, suggesting that repair in hESCs does not utilize DNA-PKcs. Altogether, our results show that hESCs have efficient DSB repair that is largely ATR-dependent HRR, whereas astrocytes critically depend on ATM for NHEJ, which, in part, is DNA-PKcs-independent.

  14. Efficacy of metformin in human single hair fibre by ATR-FTIR spectroscopy coupled with statistical analysis.

    Science.gov (United States)

    Sundaramoorthi, Kamatchi; Sethu, Gunasekaran; Ethirajulu, Sailatha; Raja Marthandam, Pavithra

    2017-03-20

    Diabetes mellitus is chronic metabolic disorder, resulting from insulin deficiency, characterized by hyperglycemia altered metabolism of carbohydrates, proteins and lipids and an increased risk of vascular complications. There are different classes of anti-diabetic drugs in allopathic system of medicine. Metformin (dimethyl biguanide) is a blood glucose lowering agent used in the treatment of non-insulin dependent diabetes mellitus. Almost in all diseases the blood serves as the primary metabolic transport system in the body. Its composition is the preferred indicator with respect to the pathophysiological condition of the patient. Instead of analyzing blood to diagnose diabetes, hair could be used to detect diabetes using FTIR-ATR technique. The most important components of hair are fibrous proteins (keratins), melanins, glycogen, and lipids. Hair follicles are located 3-4mm below the surface of the skin and are surrounded by rich blood capillary system. In the present study, ten diabetic subjects were considered to evaluate the efficacy of metformin hydrochloride for the treatment of diabetes mellitus using FTIR-ATR spectroscopy. The spectra of diabetic hair fibre samples have been recorded in the mid infrared region of 4000-450cm -1 . The hair samples of the diabetic subjects before medication were taken as pre-treatment samples. The hair samples of diabetic subjects referred to medication with metformin for a period of three month were taken as post-treatment sample. Some remarkable spectral differences were elucidated between pre- and post-treatment hair fibre samples. A comparative study on the FTIR-ATR hair spectra of patients (pre- and post-treatment) along with the healthy subjects has been made. The absorption values of some of the specific bands of biomolecules present in the hair samples viz., protein, lipids and glucose for both the pre- and post-treatment subjects are noted. It was observed that, these biomarkers are significantly different between

  15. X-linked [alpha]-thalassemia/mental retardation (ATR-X) syndrome: Localization to Xq12-q21. 31 by X inactivation and linkage analysis

    Energy Technology Data Exchange (ETDEWEB)

    Gibbons, R.J.; Buckle, V.J.; Higgs, D.R.; Suthers, G.K. (John Radcliffe Hospital, Oxford (United Kingdom)); Wilkie, A.O.M. (Univ. of Hospital of Wales, Cardiff (United Kingdom))

    1992-11-01

    The authors have examined seven pedigrees that include individuals with a recently described X-linked form of severe mental retardation associated with [alpha]-thalassemia (ATR-X syndrome). Using hematologic and molecular approaches, they have shown that intellectually normal female carriers of this syndrome may be identified by the presence of rare cells containing HbH (hemoglobin H) inclusions in their peripheral blood and by an extremely skewed pattern of X inactivation seen in cells from a variety of tissues. Linkage analysis has localized the ATR-X locus to an interval of approximately 11 cM between the loci DXS106 and DXYS1X (Xq12-q21.31), with a peak LOD score of 5.4 (recombination fraction of 0) at DCS72. These findings provide the basis for genetic counseling, assessment of carrier risk, and prenatal diagnosis of the ATR-X syndrome. Furthermore, they represent an important step in developing strategies to understand how the mutant ATR-X allele causes mental handicap, dysmorphism, and down-regulation of the [alpha]-globin genes. 54 refs., 6 figs., 4 tabs.

  16. Study of fibrinogen adsorption on hydroxyapatite and TiO2 surfaces by electrochemical piezoelectric quartz crystal impedance and FTIR-ATR spectroscopy.

    Science.gov (United States)

    Yang, Qin; Zhang, Youyu; Liu, Meiling; Ye, Min; Zhang, YuQin; Yao, Shouzhuo

    2007-07-30

    The electrochemical piezoelectric quartz crystal impedance (EQCI), a combined technique of piezoelectric quartz crystal impedance (PQCI), electrochemical impedance (EI), and Fourier transform infrared spectroscopy-attenuated total internal reflectance spectroscopy (FTIR-ATR) were used to in situ study the adsorption process of fibrinogen onto the surface of biomaterials-TiO2 and hydroxyapatite (Ca5(PO4)3OH, HAP). The equivalent circuit parameters, the resonance frequencies and the half peak width of the conductance spectrum of the two biomaterial-modified piezoelectric quartz crystal (PQC) resonances as well as the FTIR-ATR spectra of fibrinogen during fibrinogen adsorption on TiO2 and HAP particles modified electrode surface were obtained. The adsorption kinetics and mechanism of fibrinogen were investigated and discussed as well. The results suggested that two consecutive steps occurred during the adsorption of fibrinogen onto TiO2 and hydroxyapatite (HAP) surface. The fibrinogen molecules were firstly adsorbed onto the surface, and then the rearrangement of adsorbed fibrinogen or multi-layered adsorption occurred. The FTIR-ATR spectroscopy investigations showed that the secondary structure of fibrinogen molecules was altered during the adsorption and the adsorption kinetics of fibrinogen related with the variety of biomaterials. These experimental results suggest a way for enriching biological analytical science and developing new applications of analytical techniques, such as PQCI, EI, and FTIR-ATR.

  17. Measuring Heterogeneous Reaction Rates with ATR-FTIR Spectroscopy to Evaluate Chemical Fates in an Atmospheric Environment: A Physical Chemistry and Environmental Chemistry Laboratory Experiment

    Science.gov (United States)

    Roberts, Jason E.; Zeng, Guang; Maron, Marta K.; Mach, Mindy; Dwebi, Iman; Liu, Yong

    2016-01-01

    This paper reports an undergraduate laboratory experiment to measure heterogeneous liquid/gas reaction kinetics (ozone-oleic acid and ozone-phenothrin) using a flow reactor coupled to an attenuated total reflectance-Fourier transform infrared (ATR-FTIR) spectrometer. The experiment is specially designed for an upper-level undergraduate Physical…

  18. Comparison of ATR-FTIR spectra of porcine vaginal and buccal mucosa with ear skin and penetration analysis of drug and vehicle components into pig ear.

    Science.gov (United States)

    Schwarz, Julia C; Pagitsch, Elisabeth; Valenta, Claudia

    2013-12-18

    In the present study, porcine buccal and vaginal mucosae were successfully characterised by ATR-FTIR for the first time and compared to porcine ear skin. By analysing typical bands of the spectra, the structure of proteins and the lipid matrix were elucidated. According to the body site, differences in membrane permeability were detected when analysing the CH2-stretching and -scissoring vibrations. The results indicated a higher permeability for porcine vaginal and buccal tissue compared to skin. Furthermore, the influence of a lecithin-based microemulsion on the barrier properties of the above mentioned tissues was investigated by ATR-FTIR; the results revealed structural changes in all tissues. In addition, the ATR-FTIR technique was employed to semi-quantitatively analyse compounds directly on skin. To this end, tape stripping experiments were performed with a deuterated liposomal drug delivery system containing the model drug flufenamic acid. While the amount of penetrated deuterated liposomes was determined directly on skin samples by ATR-FTIR, the drug amount was analysed by HPLC after extraction of the tape strips since higher sensitivity was achieved in this fashion. Thus, it was possible to monitor the skin penetration of drug and vehicle simultaneously. Interestingly, the results indicated an independent drug penetration after release from the liposomal carrier system. Copyright © 2013 Elsevier B.V. All rights reserved.

  19. PLS models for determination of SARA analysis of Colombian vacuum residues and molecular distillation fractions using MIR-ATR

    Directory of Open Access Journals (Sweden)

    Jorge A. Orrego-Ruiz

    2014-06-01

    Full Text Available In this work, prediction models of Saturates, Aromatics, Resins and Asphaltenes fractions (SARA from thirty-seven vacuum residues of representative Colombian crudes and eighteen fractions of molecular distillation process were obtained. Mid-Infrared (MIR Attenuated Total Reflection (ATR spectroscopy in combination with partial least squares (PLS regression analysis was used to estimate accurately SARA analysis in these kind of samples. Calibration coefficients of prediction models were for saturates, aromatics, resins and asphaltenes fractions, 0.99, 0.96, 0.97 and 0.99, respectively. This methodology permits to control the molecular distillation process since small differences in chemical composition can be detected. Total time elapsed to give the SARA analysis per sample is 10 minutes.

  20. Rapid evaluation and quantitative analysis of thyme, origano and chamomile essential oils by ATR-IR and NIR spectroscopy

    Science.gov (United States)

    Schulz, Hartwig; Quilitzsch, Rolf; Krüger, Hans

    2003-12-01

    The essential oils obtained from various chemotypes of thyme, origano and chamomile species were studied by ATR/FT-IR as well as NIR spectroscopy. Application of multivariate statistics (PCA, PLS) in conjunction with analytical reference data leads to very good IR and NIR calibration results. For the main essential oil components (e.g. carvacrol, thymol, γ-terpinene, α-bisabolol and β-farnesene) standard errors are in the range of the applied GC reference method. In most cases the multiple coefficients of determination ( R2) are >0.97. Using the IR fingerprint region (900-1400 cm -1) a qualitative discrimination of the individual chemotypes is possible already by visual judgement without to apply any chemometric algorithms.The described rapid and non-destructive methods can be applied in industry to control very easily purifying, blending and redistillation processes of the mentioned essential oils.

  1. Fabrication Control Plan for ORNL RH-LOCA ATF Test Specimens to be Irradiated in the ATR

    Energy Technology Data Exchange (ETDEWEB)

    Field, Kevin G. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Howard, Richard [Idaho National Lab. (INL), Idaho Falls, ID (United States); Teague, Michael [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2014-06-01

    The purpose of this fabrication plan is (1) to summarize the design of a set of rodlets that will be fabricated and then irradiated in the Advanced Test Reactor (ATR) and (2) provide requirements for fabrication and acceptance criteria for inspections of the Light Water Reactor (LWR) – Accident Tolerant Fuels (ATF) rodlet components. The functional and operational (F&OR) requirements for the ATF program are identified in the ATF Test Plan. The scope of this document only covers fabrication and inspections of rodlet components detailed in drawings 604496 and 604497. It does not cover the assembly of these items to form a completed test irradiation assembly or the inspection of the final assembly, which will be included in a separate INL final test assembly specification/inspection document. The controls support the requirements that the test irradiations must be performed safely and that subsequent examinations must provide valid results.

  2. The Conference Proceedings of the 2001 Air Transport Research Society (ATRS) of the WCTR Society. Volume 1

    Science.gov (United States)

    Lee, Yeong-Heok (Editor); Bowen, Brent D. (Editor); Tarry, Scott E. (Editor)

    2001-01-01

    The ATRS held its Annual conference at Jeju Island, Korea in July 2001. The conference was a success with nearly 140 participants including 70 presenters. This report contains presentations from Volume 1 on the following: Airline and Travel Agent Relationships in Asia;Benchmarking Aviation Safety in the Commercial Airline Industry;Impact of Frequent Flyer Program on the Demand for Air Travel; Application of Genetic Algorithm on Airline Schedule;The Effects of Dual Carrier Designation and Partial Liberalization: The Case of Canada;Defense of Air Carriers and Air Agencies in FAA Enforcement proceedin gs - Damage Control Before the Case Arises; Cost Incentives for Airline Mergers? - An examination on the cost impact of U.S. airline mergers and acquisitions;Airport Regulation, Airline Competition and Canada's Airport System; Airline Competition: The Case of Israel's Domestic Doupoly; Non-Financial Indicators of Airline Distress: A Conceptual Approach;and Airport Privatization: An Empirical Analysis of Financial and Operational Efficiency.

  3. A Simple Approach to Distinguish Classic and Formaldehyde-Free Tannin Based Rigid Foams by ATR FT-IR

    Directory of Open Access Journals (Sweden)

    Gianluca Tondi

    2015-01-01

    Full Text Available Tannin based rigid foams (TBRFs have been produced with formaldehyde since 1994. Only recently several methods have been developed in order to produce these foams without using formaldehyde. TBRFs with and without formaldehyde are visually indistinguishable; therefore a method for determining the differences between these foams had to be found. The attenuated total reflectance infrared spectroscopy (ATR FT-IR investigation of the TBRFs presented in this paper allowed discrimination between the formaldehyde-containing (classic and formaldehyde-free TBRFs. The spectra of the formaldehyde-free TBRFs, indeed, present decreased band intensity related to the C–O stretching vibration of (i the methylol groups and (ii the furanic rings. This evidence served to prove the chemical difference between the two TBRFs and explained the slightly higher mechanical properties measured for the classic TBRFs.

  4. Fast and calibration free determination of first order reaction kinetics in API synthesis using in-situ ATR-FTIR.

    Science.gov (United States)

    Rehbein, Moritz C; Husmann, Sascha; Lechner, Christian; Kunick, Conrad; Scholl, Stephan

    2017-09-28

    In early stages of drug development only sparse amounts of the key substances are available, which is problematic for the determination of important process data like reaction kinetics. Therefore, it is important to perform experiments as economically as possible, especially in regards to limiting compounds. Here we demonstrate the use of a temperature step experiment enabling the determination of complete reaction kinetics in a single non-isothermal experiment. In contrast to the traditionally used HPLC, the method takes advantage of the high measuring rate and the low amount of labor involved in using in-situ ATR-FTIR to determine time-dependent concentration-equivalent data. Copyright © 2017 Elsevier B.V. All rights reserved.

  5. A distrofia miotônica ou miotonia atrófica: estudo sintético-crítico

    Directory of Open Access Journals (Sweden)

    Enzo Azzi

    1953-03-01

    Full Text Available O autor, baseado em algumas observações clínicas pessoais, individualiza os elementos principais (atróficos, miotônicos, neurendócrino-vegetativos que se referem à distrofia miotônica, insistindo sôbre a riqueza dos sintomas infundíbulo-hipofisários observados (distrofia adiposogenital, policitemia, perturbações do sono, constante hipoplasia da sela turca que falam em favor de uma meiopragia diencéfalo-hipofisária como mecanismo fisiopatogênico da doença. O autor discute também o problema das relações entre distrofia miotônica e miotonia de Thomsen, concluindo, com base em um de seus casos, pela identidade fundamental das duas formas e, portanto, pela sua unificação.

  6. Mirando atrás: Las representaciones de zoomorfos retrospicientes en el arte paleolítico europeo

    Directory of Open Access Journals (Sweden)

    LOMBO MONTAÑÉS, A., HERNANDO ÁLVAREZ, C., BEA, M.

    2014-01-01

    Full Text Available Se presenta el estudio de conjunto de las representaciones paleolíticas de zoomorfos con la cabeza vuelta hacia atrás. Su análisis detallado permite enunciar algunas hipótesis de carácter tecnológico (orientación, cronológico y contextual (asociación temática, al tiempo que nos acerca a su significación. Las grafías zoomorfas retrospicientes forman un pequeño grupo característico dentro del repertorio gráfico del arte paleolítico, tratándose de un motivo gráfico que además de reflejar actitudes animales reales debió convertirse, muy posiblemente, en un elemento clave de trasmisión gráfica, debido a su amplia dispersión geográfica.

  7. Tensile and impact properties of vanadium-base alloys irradiated at low temperatures in the ATR-A1 experiment

    Energy Technology Data Exchange (ETDEWEB)

    Tsai, H.; Nowicki, L.J.; Billone, M.C.; Chung, H.M.; Smith, D.L. [Argonne National Lab., IL (United States)

    1998-03-01

    Subsize tensile and Charpy specimens made from several V-(4-5)Cr-(4-5)Ti alloys were irradiated in the ATR-A1 experiment to study the effects of low-temperature irradiation on mechanical properties. These specimens were contained in lithium-bonded subcapsules and irradiated at temperatures between {approx}200 and 300 C. Peak neutron damage was {approx}4.7 dpa. Postirradiation testing of these specimens has begun. Preliminary results from a limited number of specimens indicate a significant loss of work-hardening capability and dynamic toughness due to the irradiation. These results are consistent with data from previous low-temperature neutron irradiation experiments on these alloys.

  8. Structural ATR-IR analysis of cellulose fibers prepared from a NaOH complex aqueous solution

    Science.gov (United States)

    Yang, Y. P.; Zhang, Y.; Lang, Y. X.; Yu, M. H.

    2017-06-01

    In this study, regenerated cellulose fibers were successfully prepared from cellulose/NaOH/thiourea/urea aqueous solution through an efficient extrusion dissolution method. The microstructure of the regenerated cellulose fibers were analysed by using attenuated total reflection infrared (ATR-IR) spectroscopy and the corresponding two-dimensional (2D) correlation spectroscopy. The results showed that the fibers demonstrate a typical crystalline cellulose II and a relatively high crystallinity. Improved crystal structure and tensile strength were obtained in the regenerated cellulose fibers due to improved multi-roller drawing process. The total crystalline index (TCI) and tensile strength of the fibers at different spinning stages were determined in the range of 0.46-0.54 and 1.06-2.30 cN/dtex, respectively. The described cellulose regeneration pathway provided an environmentally friendly and simple method, which could have a significant influence on current cellulose regeneration industries.

  9. Inhibition of DNA-PKcs enhances radiosensitivity and increases the levels of ATM and ATR in NSCLC cells exposed to carbon ion irradiation.

    Science.gov (United States)

    Yang, Lina; Liu, Yuanyuan; Sun, Chao; Yang, Xinrui; Yang, Zhen; Ran, Juntao; Zhang, Qiuning; Zhang, Hong; Wang, Xinyu; Wang, Xiaohu

    2015-11-01

    Non-small cell lung cancer (NSCLC) exhibits radioresistance to conventional rays, due to its DNA damage repair systems. NSCLC may potentially be sensitized to radiation treatment by reducing those factors that continuously enhance the repair of damaged DNA. In the present study, normal lung fibroblast MRC-5 and lung cancer A549 cells were treated with NU7026 and CGK733, which are inhibitors of the DNA-dependent protein kinase catalytic subunit (PKcs) and ataxia telangiectasia mutated (ATM) and ataxia telangiectasia and Rad3-related (ATR), respectively, followed by exposure to X-rays and carbon ion irradiation. The cytotoxic activity, cell survival rate, DNA damage repair ability, cell cycle arrest and apoptosis rate of the treated cells were analyzed with MTT assay, colony formation assay, immunofluorescence and flow cytometry, respectively. The transcription and translation levels of the ATM, ATR and DNA-PKcs genes were detected by reverse transcription-quantitative polymerase chain reaction and western blotting, respectively. The results indicated that the radiosensitivity and DNA repair ability of A549 cells were reduced, and the percentages of apoptotic cells and those arrested at the G2/M phase of the cell cycle were significantly increased, following ionizing radiation with inhibitor-pretreatment. The expression levels of ATM, ATR, DNA-PKcs and phosphorylated histone H2AX, a biomarker for DNA double-strand breaks, were all upregulated at the transcriptional or translational level in A549 cells treated with carbon ion irradiation, compared with the control and X-rays-treated cells. In addition, the treatment with 5-50 µM NU7026 or CGK733 did not produce any obvious cytotoxicity in MRC-5 cells, and the effect of the DNA-PKcs-inhibitor on enhancing the radiosensitivity of A549 cells was stronger than that observed for the ATM and ATR-inhibitor. These findings demonstrated a minor role for ATM and ATR in radiation-induced cell death, since the upregulation of

  10. Hubungan Kadar Iodium dalam Garam Beriodium di Rumah Tangga dengan Kecukupan Iodium Berdasarkan Nilai Ekskresi Iodium Urin (EIU pada Wanita Usia Subur

    Directory of Open Access Journals (Sweden)

    Donny Kristanto Mulyantoro

    2015-01-01

    tanah dan air setempat kurang mengandung iodium. Pada daerah tersebut Wanita Usia Subur (WUS adalah segmen penduduk yang rawan mengalami GAKI. Sebagai upaya penanggulangan, saat ini dilakukan fortifikasi iodium pada garam. Tujuan penelitian ini untuk mengukur hubungan antara kadar iodium dalam garam beriodium di rumah tangga dengan kecukupan iodium berdasarkan nilai ekskresi iodium urin (EIU. Penelitian ini merupakan penelitian observasional dengan desain potong lintang. Lokasi penelitian di Desa Kragilan, Kecamatan Pakis, Kabupaten Magelang. Sebanyak 68 wanita usia 18 – 45 tahun terlibat dalam penelitian ini, yang diukur kadar iodium dalam garam yang digunakan di rumah tangga, kecukupan iodium berdasarkan kadar iodium urin (EIU, konsumsi garam beriodium dan makanan sumber iodium. Hasil penelitian menunjukkan bahwa median EIU sebesar 124,6 μg/L, proporsi subyek penelitian mengalami defisiensi iodium sebesar 41,1%, dan mengalami excess sebesar 5,9%. Rata-rata kadar iodium dalam garam beriodium di rumah tangga sebesar 19,6 ppm dan proporsi garam beriodium memenuhi syarat (≥ 30 ppm KIO3 sebesar 52,9%. Hasil analisis korelasi pearson menunjukkan ada hubungan bermakna antara kadar iodium dalam garam beriodium di rumah tangga dengan kecukupan iodium berdasarkan nilai EIU (rho = 0,5, p < 0,01. Hasil analisis multi variabel diperoleh persamaan Y = 22,199 + 6,076 X1. Dengan persamaan tersebut, untuk memenuhi kebutuhan iodium, kadar iodium dalam garam beriodium berkisar antara 13 – 29 ppm iodium atau 22 – 49 ppm KIO3. Kata kunci: iodium, garam beriodium, kecukupan iodium, EIU, wanita.

  11. KLASTERISASI EKOSISTEM TAMAN NASIONAL GUNUNG MERBABU BERDASARKAN ASPEK BIOLOGIS DAN SOSIAL EKONOMI (Classification Ecosystem of the Gunung Merbabu National Park Based on Biological and Socioeconomic Aspects

    Directory of Open Access Journals (Sweden)

    Dwi Hastuti

    2011-07-01

    Full Text Available ABSTRAK Penelitian ini bertujuan untuk klasterisasi unit ekologis ekosistem Taman Nasional Gunung Merbabu (TNGMb berdasarkan aspek biologis dan sosial ekonomi masyarakat, mengetahui pola pemanfaatan masyarakat terhadap sumberdaya alam TNGMb. Sampel untuk sosial ekonomi sebanyak 310 KK, sedangkan sampel aspek biologis sebanyak 226 titik sampel. Analisis data menggunakan metode Minimum Variance Clustering (Ward Linkage berdasarkan Euclidean Distance dan analisis diskriminan. Hasil klasterisasi unit ekologis TNGMb sebanyak 8 klaster yaitu klaster I (2 responden, dominasi jenis C. sempervirens, klaster J (39 responden, dominasi jenis P. merkusii, A. lophanta, klaster F (210 responden, dominasi jenis P. merkusii, C. sempervirens, C. junghuniana, klaster O (96 responden, dominasi jenis P. merkusii, C. sempervirens, C. junghuniana, klaster Q (54 responden, dominasi jenis P.merkusii, A. lophanta, A. decurens, klaster P (158 responden, dominasi jenis P.merkusii, C. sempervirens, A.decurens, klaster H (34 responden, dominasi jenis P. merkusii, dan klaster R (46 responden, dominasi jenis P. merkusii. Pola pergerakan masyarakat mencakup seluruh klaster dan meliputi zona inti, zona rimba, dan zona pemanfaatan. Pergerakan masyarakat yang mencapai zona inti merupakan faktor yang terpenting untuk dipertimbangkan dalam pengelolaan TNGMb. ABSTRACT The aim of reseach was  clusterization of TNGMb ecosystem based on bioligical and sosio-economical aspect, studying  the pattern utilization of community in order to utilize nature resources in the Gunung Merbabu National Park.  Sosial-economical data was collacted through an interview on 310 KK , while biological data was done on 226 sampel set using systematic sampling. Analysis data using Minimum Variance Clustering (Ward linkage method with Euclidean Distance Measurement (EDM and discriminant analysis. The clusterization ecological unit Gunung Merbabu National Park resulted eight clusters, i.e. cluster I (2

  12. Estimasi Populasi Orangutan (Pongo Pygmaeus Morio) Berdasarkan Sarang Pada Resort Mawai-muara Bengkal Sptn Wilayah II Taman Nasional Kutai. Population Estimates Based on Nests Orangutans (Pongo Pygmaeus Morio) in Kutai National Park in Resort Mawai - Muar

    OpenAIRE

    Taufan Tirkaamiana, Alqaf, Legowo Kamarubayana, dan

    2016-01-01

    Estimasi Populasi Orangutan berdasarkan sarang (Pongo pygmaeus morio) di Taman Nasional Kutai di Resort Mawai-Muara Bengkal. Penelitian ini dilakukan di Taman Nasional Kutai Resort Mawai-Muara Bengkal, Kutai Timur dan Kabupaten Kutai Kartanegara, Provinsi Kalimantan Timur, yang berlangsung selama 3 (tiga) bulan, mulai bulan Maret hingga Mei 2014. Tujuan dari penelitian ini adalah untuk menghitung kepadatan individu populasi Orangutan. Arti penting dari penelitian ini adalah untuk memberikan i...

  13. AGR-3/4 Data Qualification Report for ATR Cycles 151A, 151B, 152A, 152B, 154A, and 154B

    Energy Technology Data Exchange (ETDEWEB)

    Binh T. Pham

    2014-02-01

    This data report provides the qualification status of Advanced Gas Reactor-3/4 (AGR-3/4) fuel irradiation experimental data from Advanced Test Reactor (ATR) Cycles 151A, 151B, 152A, 152B, 154A, and 154B, as recorded in the Nuclear Data Management and Analysis System (NDMAS). Of these cycles, ATR Cycle 152A is a low power cycle that occurred when the ATR core was briefly at low power. The irradiation data are not used for physics and thermal calculation, but the qualification status of these cycle data is still covered in this report. On the other hand, during ATR Cycles 153A (unplanned Outage cycle) and 153B (Power Axial Locator Mechanism [PALM] cycle), the AGR-3/4 was pulled out from the ATR core and stored in the canal to avoid being overheated. Therefore, qualification of the AGR-3/4 irradiation data from these 2 cycles was excluded in this report. By the end of ATR Cycle 154B, AGR-3/4 was irradiated for a total of 264.1 effective full power days. The AGR-3/4 data streams addressed in this report include thermocouple (TC) temperatures, sweep gas data (flow rates, pressure, and moisture content), and Fission Product Monitoring System (FPMS) data (release rates and release-to-birth rate ratios [R/Bs]) for each of the twelve capsules in the AGR-3/4 experiment. The final data qualification status for these data streams is determined by a Data Review Committee (DRC) composed of AGR technical leads, Sitewide Quality Assurance (QA), and NDMAS analysts. The DRC convened on February 12, 2014, reviewed the data acquisition process, and considered whether the data met the requirements for data collection as specified in QA-approved Very High Temperature Reactor (VHTR) Technology Development Office (TDO) data collection plans. The DRC also examined the results of NDMAS data testing and statistical analyses, and confirmed the qualification status of the data as given in this report.

  14. Overview of aerosol properties associated with air masses sampled by the ATR-42 during the EUCAARI campaign (2008)

    Science.gov (United States)

    Crumeyrolle, S.; Schwarzenboeck, A.; Sellegri, K.; Burkhart, J. F.; Stohl, A.; Gomes, L.; Quennehen, B.; Roberts, G.; Weigel, R.; Roger, J. C.; Villani, P.; Pichon, J. M.; Bourrianne, T.; Laj, P.

    2012-04-01

    Within the frame of the European Aerosol Cloud Climate and Air Quality Interactions (EUCAARI) project the Météo-France aircraft ATR-42 performed 22 research flights, over central Europe and the North Sea during the intensive observation period in May 2008. For the campaign, the ATR-42 was equipped in order to study aerosol physical, chemical and optical properties, as well as cloud microphysics. During the campaign, continental air masses from Eastern and Western Europe were encountered, along with polar and Scandinavian air masses. For the 22 research flights, retroplume analyses along the flight tracks were performed with FLEXPART in order to classify air masses into five sectors of origin which allows for a qualitative evaluation of emission influence on the respective air parcel. In the polluted boundary layer (BL), typical concentrations of particles with diameters larger than 10 nm (N10) are of the order of 5000-6000 cm-3, whereas N10 concentrations of clean air masses were lower than 1300 cm-3. The detection of the largest particle number concentrations occurred in air masses coming from Polar and Scandinavian regions for which an elevated number of nucleation mode (25-28 nm) particles was observed and attributed to new particle formation over open sea. In the free troposphere (FT), typical observed N10 are of the order of 900 cm-3 in polluted air masses and 400-600 cm-3 in clean air masses, respectively. In both layers, the chemical composition of submicron aerosol particles is dominated by organic matter and nitrate in polluted air masses, while, sulphate and ammonium followed by organics dominate the submicron aerosols in clean air masses. The highest CCN/CN ratios were observed within the polar air masses while the CCN concentration values are the highest within the polluted air masses. Within the five air mass sectors defined and the two layers (BL and FT), observations have been distinguished into anticyclonic (first half of May 2008) and cyclonic

  15. Investigation of aged Asian dust particles by the combined use of quantitative ED-EPMA and ATR-FTIR imaging

    Directory of Open Access Journals (Sweden)

    Y.-C. Song

    2013-03-01

    Full Text Available In our previous works, it was demonstrated that the combined use of quantitative energy-dispersive electron probe X-ray microanalysis (ED-EPMA, which is also known as low-Z particle EPMA, and attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR imaging has great potential for a detailed characterization of individual aerosol particles. In this study, extensively chemically modified (aged individual Asian dust particles collected during an Asian dust storm event on 11 November 2002 in Korea were characterized by the combined use of low-Z particle EPMA and ATR-FTIR imaging. Overall, 109 individual particles were classified into four particle types based on their morphology, elemental concentrations, and molecular species and/or functional groups of individual particles available from the two analytical techniques: Ca-containing (38%, NaNO3-containing (30%, silicate (22%, and miscellaneous particles (10%. Among the 41 Ca-containing particles, 10, 8, and 14 particles contained nitrate, sulfate, and both, respectively, whereas only two particles contained unreacted CaCO3. Airborne amorphous calcium carbonate (ACC particles were observed in this Asian dust sample for the first time, where their IR peaks for the insufficient symmetric environment of CO32− ions of ACC were clearly differentiated from those of crystalline CaCO3. This paper also reports the first inland field observation of CaCl2 particles probably converted from CaCO3 through the reaction with HCl(g. HCl(g was likely released from the reaction of sea salt with NOx/HNO3, as all 33 particles of marine origin contained NaNO3 (no genuine sea salt particle was encountered. Some silicate particles with minor amounts of calcium were observed to be mixed with nitrate, sulfate, and water. Among 24 silicate particles, 10 particles are mixed with water, the presence of which could facilitate atmospheric heterogeneous reactions of silicate particles including swelling

  16. PENGENALAN PENY AKIT NODA PADA CITRA DAUN TEBU BERDASARKAN CIRI TEKSTUR FRACTAL DIMENSION CO-OCCURRENCE MATRIX DAN L*a*b* COLOR MOMENTS

    Directory of Open Access Journals (Sweden)

    Evy Kamilah Ratnasari

    2014-07-01

    Full Text Available Penyakit yang menyerang tebu dapat disebabkan oleh bakteri, jamur maupun virus. Penyakit noda merupakan penyakit pada tanaman tebu yang disebabkan oleh jamur dengan menampakkan lesi atau bercak pada permukaan daun. Penyakit noda tersebut dapat menghambat proses fotosintesis yang akan berakibat menurunkan produksi gula karena mempengaruhi pertumbuhan tebu. Upaya pengendalian dini dapat dilakukan dengan mengenali jenis penyakit melalui lesinya yang bermanfaat dalam menentukan tindakan penanganan yang tepat. Lesi yang disebabkan oleh penyakit noda masing-masing dapat dikenali secara visual karena memiliki ciri warna dan tekstur yang unik. Tetapi pengamatan secara visual memiliki beberapa kekurangan seperti subjektifitas dan kurang akurat. Penelitian ini mengusulkan pengenalan penyakit noda tanaman tebu yang terdiri dari noda cincin, noda karat, dan noda kuning berdasarkan fitur tekstur yang merupakan kombinasi dari konsep Gray Level Co-Occurrence Matrix (GLCM dan dimensi fraktal yang dinamakan Fractal Dimension Co-Occurrence Matrix (FDCM. Sedangkan fitur warna didapatkan dari perhitungan statistik col or moments pada citra L*a*b*. Kombinasi fitur tersebut menghasilkan 12 fitur warna dan 6 fitur tekstur yang kemudian digunakan sebagai masukan klasifikasi k-Nearest Neighbor (KNN. Pengenalan penyakit noda pada tanaman tebu menggunakan metode tersebut dapat menghasilkan akurasi tertinggi 90%.

  17. EVALUASI KEAMANAN INFORMASI PADA PTI PDAM TIRTA MOEDAL KOTA SEMARANG BERDASARKAN INDEKS KEAMANAN INFORMASI SNI ISO/IEC 27001:2009

    Directory of Open Access Journals (Sweden)

    Diah Restu Wardani

    2015-10-01

    Full Text Available Adanya rencana untuk meningkatkan keamanan informasi sesuai dengan Standar Nasional Indonesia (SNI. Selain rencana tersebut, ditemukan kurangnya kesadaran dari masing-masing staff PTI PDAM Tirta Moedal Kota Semarang terkait dengan keamanan informasi menyebabkan terjadinya berbagai masalah salah satunya penyalahgunaan wewenang yang dilakukan oleh staff PTI yaitu dengan mengubah sistem operasi yang telah ditetapkan oleh PTI PDAM dan kejadian tersebut berdampak pada proses bisnis. Ditemukan pula bahwa kurangnya pengamanan pada ruang server yang ada di divisi PTI. Tujuan dari penelitian ini adalah untuk mengevaluasi tingkat kelengkapan dan tingkat kematangan keamanan informasi pada divisi PTI serta memberikan rekomendasi perbaikan untuk meningkatkan tingkat kelengkapan dan tingkat kematangan keamanan informasi. Dari hasil studi dokumen, wawancara, dan kuesioner berdasarkan Indeks Keamanan Informasi SNI ISO/IEC 27001:2009 dihasilkan tingkat kelengkapan keamanan informasi sebesar 325 dan tingkat kematangan berada pada tingkat I+ dimana sudah ada pemahaman mengenai perlunya pengelolaan kemanan informasi akan tetapi penerapan langkah pengamanan masih belum teratur. Untuk mencapai tingkat kematangan V dan sesuai dengan Standar Nasional Indonesia (SNI PTI PDAM Tirta Moedal Kota Semarang dapat melakukan strategi perbaikan secara bertahap. Kata Kunci: Indeks Keamanan Informasi, SNI ISO/IEC 27001:2009, Evaluasi Keamanan Informasi, Tingkat Kelengkapan, Tingkat Kematangan

  18. KARAKTERISTIK SERTA FAKTOR RESIKO KEMATIAN AKIBAT TENGGELAM BERDASARKAN DATA BAGIAN ILMU KEDOKTERAN FORENSIK RUMAH SAKIT UMUM PUSAT SANGLAH 2010 – 2012

    Directory of Open Access Journals (Sweden)

    Rizki Usaputro

    2014-05-01

    Full Text Available Tenggelam didefinisikan sebagai kematian karena asfiksia dalam 24 jam akibatterendam pada air. Kematian akibat tenggelam menjadi salah satu ancaman bagipariwisata Bali yang memiliki banyak pantai. Penelitian ini bertujuan untuk mengetahuikarakteristik kematian dan faktor resiko penyebab kematian pada kasus tenggelam. Padapenelitian yang bersifat deskriptif cross-sectional ini diteliti karakteristik serta faktorresiko pada kasus kematian akibat tenggelam menurut data Bagian Ilmu KedokteranForensik RSUP Sanglah tahun 2010 – 2012.  Variabel yang diteliti meliputi umur, jeniskelamin, kewarganegaraan, tempat tenggelam, korban diotopsi atau tidak, serta faktorresiko tenggelam. Hasil yang didapat dari penelitian yaitu terdapat 97 kasus tenggelam.Sampel yang memenuhi kriteria tercatat sebanyak 71 kasus, dimana 20 diantaranyadilakukan otopsi.  Berdasarkan jenis kelamin, korban terbanyak adalah laki-laki(84,5%. Kelompok 21-30 tahun menjadi korban tenggelam yang paling banyak.Korban berkewarganegaraan Indonesia paling tinggi (40,8%, serta tempat terjadinyakejadian tenggelam di air laut terbanyak dengan 53,5%. Dari jumlah yang diotopsisebanyak 10 orang (50% memiliki salah satu faktor resiko tenggelam. Simpulan daripenelitian ini adalah faktor resiko yang banyak menyebabkan kematian pada korbantenggelam adalah trauma fatal, penyakit penyerta, serta riwayat konsumsi alkoholsebelum tenggelam. Saran kepada pihak yang berwenang adalah memastikan semuaorang yang melakukan aktifitas di air telah dalam kondisi yang baik.

  19. Pembuatan Service Level Requirement, Service Level Agreement dan Operational Level Agreement pada layanan help desk SAP berdasarkan kerangka kerja ITIL versi 2011 (Studi Kasus : Pupuk Indonesia Holding Company

    Directory of Open Access Journals (Sweden)

    Nur Shabrina Prameswari

    2017-01-01

    Full Text Available PT. Pupuk Indonesia Holding Company baru saja melakukan implementasi SAP pada tahun 2014. Dalam penerapannya, perusahaan merasa perlu membuat help desk SAP sebagai pusat penanganan masalah bagi perusahaan dan 7 anak perusahaannya yang kemudian dapat berfungsi juga sebagai knowledge base yang berguna apabila ada masalah yang berulang diwaktu selanjutnya. Untuk merancang layanan help desk yang baik, perlu didefinisikannya target layanan dalam sebuah kontrak perjanjian antara pengguna layanan dan penyedia layanan. Selain itu,Perjanjian layanan tersebut diperlukan juga sebagai jaminan kualitas help desk yang dapat disepakati oleh penyedia layanan dan pengguna layanan yang merupakan pengguna SAP pada PT. Pupuk Indonesia dan anak perusahaannya. Hal tersebut bertujuan untuk menyelaraskan bisnis dengan kualitas layanan serta menentukan kebutuhan dan harapan pelanggan dalam sebuah perjanjian antara penyedia layanan dan pengguna layanan. Dari permasalahan tersebut, maka diperlukan pembuatan dokumen Service Level Requirement, Service Level Agreement dan juga Operational Level Agreement pada help desk SAP, dengan dilakukan observasi dokumen dan wawancara pada pihak pengguna layanan dan penyedia layanan, maka setelah itu dibuatlah dokumen Service Level management tersebut berdasarkan ITIL Versi 2011.

  20. Pembuatan Standard Operating Procedure (SOP Service Desk Berdasarkan Kerangka Kerja Itil V3 dengan Menggunakan Metode Analisis Gap Layanan (Studi Kasus: PT. XYZ , Tangerang

    Directory of Open Access Journals (Sweden)

    Annisa Rachmi

    2014-09-01

    Full Text Available Penggunaan Teknologi Informasi di banyak perusahaan telah menjadi satu hal penting dalam meningkatkan efektifitas dan efisiensi operasional bisnis yang mendukung tercapainya tujuan perusahaan, termasuk juga PT XYZ. Unit fungsional service desk sangat dibutuhkan oleh PT XYZ dalam mendukung operasional TI dan menangani permasalahan yang muncul serta memonitor terkait penggunaan TI yang ada di dalam perusahaan. Adanya kebutuhan PT XYZ untuk menjadikan service desk menjadi unit yang dapat berjalan dengan baik sesuai dengan fungsinya, menunjukkan bahwa perlunya penerapan tata kelola TI untuk mengatur dan mengelola aktivitas service desk. Salah satu tata kelola TI yang dimaksud adalah berupa prosedur kerja. Kerangka kerja Information Technology Infrastructure Library (ITIL merupakan suatu best practice yang bertujuan secara berkelanjutan meningkatkan efisiensi operasional TI. Perancangan dan implementasi service desk berdasarkan kerangka kerja ITIL V3 di PT XYZ diperlukan dalam upaya meningkatkan layanan TI dan mengatasi masalah yang ada saat ini. Pembuatan SOP ini diinisialisasi dengan menggunakan metode analisis gap, proses-proses yang dimuat ke dalam SOP merupakan hasil analisis kesenjangan antara kondisi kekinian service desk PT XYZ dengan kondisi ideal service desk framework ITIL.

  1. APLIKASI SISTEM INFORMASI PERTANAHAN BERDASARKAN JENIS-JENIS HAK ATAS TANAH DI KANTOR PERTANAHAN KOTA SURABAYA II (STUDI KASUS KELURAHAN GENTENG, KECAMATAN GENTENG, SURABAYA

    Directory of Open Access Journals (Sweden)

    Ery Abdul Baary

    2015-02-01

    Full Text Available Di Kantor Pertanahan Kota Surabaya II, sistem informasi pertanahan belum diterapkan, jadi untuk melaksanakan tugasnya hanya menggunakan sebatas peta digital, maka dari itu perlu adanya sistem informasi pertanahan yang terpadu dan mutakhir untuk mendukung dan mengoptimalkan pengelolaan sistem informasi pertanahan di Kota Surabaya II.Pada penelitian ini akan dilakukan pembuatan sistem informasi pertanahan berdasarkan jenis hak atas tanah dengan menggunakan peta digital Kelurahan Genteng, Kecamatan Genteng, Surabaya skala 1:1000, citra Quickbird 2010, database mengenai bidang tanah dan data hasil survey. Pengolahan data menggunakan software utama Autodesk Land Dekstop 2009, ArcGIS 9.3. Pembuatan program aplikasi menggunakan software Visual Basic 6.0 yang dilengkapi dengan software tambahan MapObject 2.2.Dari hasil pembuatan Sistem informasi pertanahan di Kelurahan Genteng, Program ini mampu mengidentifikasi informasi bidang tanah mengenai jenis hak atas tanah yang meliputi 224 bidang tanah yang terdiri dari 132 bidang tanah atas hak guna bangunan, 89 bidang tanah atas hak milik, dan 3 bidang tanah atas hak pakai, serta dilengkapi dengan buku panduan sehingga dapat digunakan untuk membantu dalam pengambilan kebijakan dalam rencana pelaksanaan program inventarisasi penguasaan, pemilikan, penggunaan, dan pemanfaatan tanah.

  2. Role of Bi promotion and solvent in platinum-catalyzed alcohol oxidation probed by in situ X-ray absorption and ATR-IR spectroscopy

    DEFF Research Database (Denmark)

    Mondelli, C.; Grunwaldt, Jan-Dierk; Ferri, D.

    2010-01-01

    the catalysts under working conditions using in situ X-ray absorption spectroscopy (XAS) and attenuated total reflection infrared spectroscopy (ATR-IR), aiming at uncovering the roles of the metal promoter and the reaction medium. XAS confirms that Bi is oxidized more easily than Pt, maintaining the catalytic....... This behaviour is not observed in the presence of Bi, whose geometric effect (site blocking) is interpreted as additionally limiting the adsorption of toluene and the premature deactivation of Pt. ATR-IR spectroscopy during CO adsorption on Pt and during reaction indicates that Bi is located rather on extended...... surfaces than on step or kink sites. Side products, CO and benzoate species, appearing during the reaction reveal that the geometric suppression of undesired reactions does not occur to the same extent on Pt-based catalysts as on Pd, suggesting that decarbonylation of the produced aldehyde on Pt may occur...

  3. In-line ATR-UV and Raman Spectroscopy for Monitoring API Dissolution Process During Liquid-Filled Soft-Gelatin Capsule Manufacturing.

    Science.gov (United States)

    Wan, Boyong; Zordan, Christopher A; Lu, Xujin; McGeorge, Gary

    2016-10-01

    Complete dissolution of the active pharmaceutical ingredient (API) is critical in the manufacturing of liquid-filled soft-gelatin capsules (SGC). Attenuated total reflectance UV spectroscopy (ATR-UV) and Raman spectroscopy have been investigated for in-line monitoring of API dissolution during manufacturing of an SGC product. Calibration models have been developed with both techniques for in-line determination of API potency. Performance of both techniques was evaluated and compared. The ATR-UV methodology was found to be able to monitor the dissolution process and determine the endpoint, but was sensitive to temperature variations. The Raman technique was also capable of effectively monitoring the process and was more robust to the temperature variation and process perturbations by using an excipient peak for internal correction. Different data preprocessing methodologies were explored in an attempt to improve method performance.

  4. Understanding the Crystallinity Indices Behavior of Burned Bones and Teeth by ATR-IR and XRD in the Presence of Bioapatite Mixed with Other Phosphate and Carbonate Phases

    Directory of Open Access Journals (Sweden)

    Giampaolo Piga

    2016-01-01

    Full Text Available We have critically investigated the ATR-IR spectroscopy data behavior of burned human teeth as opposed to the generally observed behavior in human bones that were subjected to heat treatment, whether deliberate or accidental. It is shown that the deterioration of the crystallinity index (CI behavior sometimes observed in bones subjected to high temperature appears to be of higher frequency in the case of bioapatite from teeth. This occurs because the formation of the β-tricalcium phosphate (β-TCP phase, otherwise known as whitlockite, clearly ascertained by the X-ray diffraction (XRD patterns collected on the same powdered specimens investigated by ATR-IR. These results point to the need of combining more than one physicochemical technique even if apparently well suitable, in order to verify whether the assumed conditions assessed by spectroscopy are fully maintained in the specimens after temperature and/or mechanical processing.

  5. A Feasibility Study to Determine Cooling Time and Burnup of ATR Fuel Using a Nondestructive Technique and Three Types of Gamma-ray Detectors

    Energy Technology Data Exchange (ETDEWEB)

    Jorge Navarro; Rahmat Aryaeinejad,; David W. Nigg

    2011-05-01

    A Feasibility Study to Determine Cooling Time and Burnup of ATR Fuel Using a Nondestructive Technique1 Rahmat Aryaeinejad, Jorge Navarro, and David W Nigg Idaho National Laboratory Abstract Effective and efficient Advanced Test Reactor (ATR) fuel management require state of the art core modeling tools. These new tools will need isotopic and burnup validation data before they are put into production. To create isotopic, burn up validation libraries and to determine the setup for permanent fuel scanner system a feasibility study was perform. The study consisted in measuring short and long cooling time fuel elements at the ATR canal. Three gamma spectroscopy detectors (HPGe, LaBr3, and HPXe) and two system configurations (above and under water) were used in the feasibility study. The first stage of the study was to investigate which detector and system configuration would be better suited for different scenarios. The second stage of the feasibility study was to create burnup and cooling time calibrations using experimental isotopic data collected and ORIGEN 2.2 burnup data. The results of the study establish that a better spectra resolution is achieve with an above the water configuration and that three detectors can be used in the permanent fuel scanner system for different situations. In addition it was conclude that a number of isotopic ratios and absolute measurements could be used to predict ATR fuel burnup and cooling times. 1This work was supported by the U.S. Depart¬ment of Energy (DOE) under Battelle Energy Alliance, LLC Contract No. DE-AC07-05ID14517.

  6. Bacterial and abiotic decay in waterlogged archaeological Picea abies (L.) Karst studied by confocal Raman imaging and ATR-FTIR spectroscopy

    DEFF Research Database (Denmark)

    Pedersen, Nanna Bjerregaard; Gierlinger, Notburga; Thygesen, Lisbeth Garbrecht

    2015-01-01

    Waterlogged archaeological Norway spruce [Picea abies (L.) Karst] poles were studied by means of confocal Raman imaging (CRI) and attenuated total reflection Fourier transform infrared spectroscopy (ATR-FTIR) analysis to determine lignin and polysaccharide composition and distribution in the cell...... wall. The waterlogged archaeological wood (WAW) was submerged under anoxic conditions for approximately 400 years and solely decayed by erosion bacteria (EB). CRI showed that decayed tracheids contain a residual material (RM) with heterogeneous lignin distribution; within the same tracheid RM often...

  7. Pharmacologic ATM but not ATR kinase inhibition abrogates p21-dependent G1 arrest and promotes gastrointestinal syndrome after total body irradiation.

    Science.gov (United States)

    Vendetti, Frank P; Leibowitz, Brian J; Barnes, Jennifer; Schamus, Sandy; Kiesel, Brian F; Abberbock, Shira; Conrads, Thomas; Clump, David Andy; Cadogan, Elaine; O'Connor, Mark J; Yu, Jian; Beumer, Jan H; Bakkenist, Christopher J

    2017-02-01

    We show that ATM kinase inhibition using AZ31 prior to 9 or 9.25 Gy total body irradiation (TBI) reduced median time to moribund in mice to 8 days. ATR kinase inhibition using AZD6738 prior to TBI did not reduce median time to moribund. The striking finding associated with ATM inhibition prior to TBI was increased crypt loss within the intestine epithelium. ATM inhibition reduced upregulation of p21, an inhibitor of cyclin-dependent kinases, and blocked G1 arrest after TBI thereby increasing the number of S phase cells in crypts in wild-type but not Cdkn1a(p21CIP/WAF1)-/- mice. In contrast, ATR inhibition increased upregulation of p21 after TBI. Thus, ATM activity is essential for p21-dependent arrest while ATR inhibition may potentiate arrest in crypt cells after TBI. Nevertheless, ATM inhibition reduced median time to moribund in Cdkn1a(p21CIP/WAF1)-/- mice after TBI. ATM inhibition also increased cell death in crypts at 4 h in Cdkn1a(p21CIP/WAF1)-/-, earlier than at 24 h in wild-type mice after TBI. In contrast, ATR inhibition decreased cell death in crypts in Cdkn1a(p21CIP/WAF1)-/- mice at 4 h after TBI. We conclude that ATM activity is essential for p21-dependent and p21-independent mechanisms that radioprotect intestinal crypts and that ATM inhibition promotes GI syndrome after TBI.

  8. Evaluation of Salmon Adhesion on PET-Metal Interface by ATR, FT-IR, and Raman Spectroscopy

    Directory of Open Access Journals (Sweden)

    E. Zumelzu

    2015-01-01

    Full Text Available The material employed in this study is an ecoefficient, environmentally friendly, chromium (VI-free (noncarcinogenic metal polymer. The originality of the research lies in the study of the effect of new production procedures of salmon on metal packaging with multilayer polyethylene terephthalate (PET polymer coatings. Our hypothesis states that the adhesion of postmortem salmon muscles to the PET polymer coating produces surface and structural changes that affect the functionality and limit the useful life of metal containers, compromising therefore their recycling capacity as ecomaterials. This work is focused on studying the effects of the biochemical changes of postmortem salmon on the PET coating and how muscle degradation favors adhesion to the container. The experimental design considered a series of laboratory tests of containers simulating the conditions of canned salmon, chemical and physical tests of food-contact canning to evaluate the adhesion, and characterization of changes in the multilayer PET polymer by electron microscopy, ATR, FT-IR, and Raman spectroscopy analyses. The analyses determined the effect of heat treatment of containers on the loss of freshness of canned fish and the increased adhesion to the container wall, and the limited capability of the urea treatment to remove salmon muscle from the container for recycling purposes.

  9. Colloidal carriers of isotretinoin for topical acne treatment: skin uptake, ATR-FTIR and in vitro cytotoxicity studies.

    Science.gov (United States)

    Gürbüz, Aslı; Özhan, Gül; Güngör, Sevgi; Erdal, M Sedef

    2015-09-01

    Acne vulgaris is the chronical, multifactorial and complex disease of the pilosebaceous unit in the skin. The main goal of the topical therapy in acne is to target the drug to epidermal and deep dermal regions by minimizing systemic absorption . Isotretinoin, a retinoic acid derivative, is the most effective drug in acne pathogenesis. Because systemic treatment may cause many side effects, topical isotretinoin treatment is an option in the management of acne. However, due to its high lipophilic character, isotretinoin tends to accumulate in the upper stratum corneum, thus its penetration into the lower layers is limited, which restricts the efficiency of topical treatment. Microemulsions are fluid, isotropic, colloidal drug carriers that have been widely studied as drug delivery systems. The percutaneous transport of active agents can be enhanced by microemulsions when compared with their conventional formulations. The purpose of this study was to evaluate microemulsions as alternative topical carriers for isotretinoin with an objective to improve its skin uptake. After in vitro permeation studies, the dermal penetration of isotretinoin from microemulsions was investigated by tape stripping procedure. Confocal laser scanning microscopy provided insight about the localization of the drug in the skin. The interaction between the microemulsion components and stratum corneum lipids is studied by ATR-FTIR spectroscopy. The relative safety of the microemulsions was assessed in mouse embryonic fibroblasts using MTT viability test. The results indicate that microemulsion-based novel colloidal carriers have a potential for enhanced skin delivery and localization of isotretinoin.

  10. Determination of surface concentrations of individual molecule-layers used in nanoscale biosensors by in situ ATR-FTIR spectroscopy

    KAUST Repository

    Punzet, Manuel

    2012-01-01

    For the development of nanowire sensors for chemical and medical detection purposes, the optimal functionalization of the surface is a mandatory component. Quantitative ATR-FTIR spectroscopy was used in situ to investigate the step-by-step layer formation of typical functionalization protocols and to determine the respective molecule surface concentrations. BSA, anti-TNF-α and anti-PSA antibodies were bound via 3-(trimethoxy)butylsilyl aldehyde linkers to silicon-oxide surfaces in order to investigate surface functionalization of nanowires. Maximum determined surface concentrations were 7.17 × 10 -13 mol cm -2 for BSA, 1.7 × 10 -13 mol cm -2 for anti-TNF-α antibody, 6.1 × 10 -13 mol cm -2 for anti-PSA antibody, 3.88 × 10 -13 mol cm -2 for TNF-α and 7.0 × 10 -13 mol cm -2 for PSA. Furthermore we performed antibody-antigen binding experiments and determined the specific binding ratios. The maximum possible ratio of 2 was obtained at bulk concentrations of the antigen in the μg ml -1 range for TNF-α and PSA. © 2012 The Royal Society of Chemistry.

  11. Application of FTIR-ATR to Moscatel dessert wines for prediction of total phenolic and flavonoid contents and antioxidant capacity.

    Science.gov (United States)

    Silva, Sandra D; Feliciano, Rodrigo P; Boas, Luís V; Bronze, Maria R

    2014-05-01

    Fourier transform infrared spectroscopy (FTIR) attenuated total reflectance (ATR) was applied for the determination of total phenolic and flavonoid contents and antioxidant capacity (DPPH and FRAP assays) in Moscatel dessert wines (n=56). Prediction models were developed for the referred parameters using Partial Least Squares (PLS) considering the spectral region 1800-900cm(-1). The determination coefficients (r(2)) values in the calibration models ranged from 0.670 to 0.870. Cross validation (leave-one-out technique) was applied to the data. Root mean square errors of calibration (RMSEC) and cross validation (RMSECV) as well as the relative errors of prediction (REP) were calculated. Minimum errors of prediction were obtained for total flavonoid content (0.2%) and maximum values (22%) for antioxidant capacity measured by FRAP. The proposed method may be used for rapid screening of total phenolic and flavonoid contents in Moscatel dessert wines. The implemented methodologies may also be used to get rough estimates for DPPH and FRAP antioxidant capacities. Copyright © 2013 Elsevier Ltd. All rights reserved.

  12. Perfluoroalkylated Substance Effects in Xenopus laevis A6 Kidney Epithelial Cells Determined by ATR-FTIR Spectroscopy and Chemometric Analysis

    Science.gov (United States)

    2016-01-01

    The effects of four perfluoroalkylated substances (PFASs), namely, perfluorobutanesulfonate (PFBS), perfluorooctanoic acid (PFOA), perfluorooctanesulfonate (PFOS), and perfluorononanoic acid (PFNA) were assessed in Xenopus laevis A6 kidney epithelial cells by attenuated total reflection Fourier-transform infrared (ATR-FTIR) spectroscopy and chemometric analysis. Principal component analysis–linear discriminant analysis (PCA-LDA) was used to visualize wavenumber-related alterations and ANOVA-simultaneous component analysis (ASCA) allowed data processing considering the underlying experimental design. Both analyses evidenced a higher impact of low-dose PFAS-treatments (10–9 M) on A6 cells forming monolayers, while there was a larger influence of high-dose PFAS-treatments (10–5 M) on A6 cells differentiated into dome structures. The observed dose–response PFAS-induced effects were to some extent related to their cytotoxicity: the EC50-values of most influential PFAS-treatments increased (PFOS < PFNA < PFOA ≪ PFBS), and higher-doses of these chemicals induced a larger impact. Major spectral alterations were mainly attributed to DNA/RNA, secondary protein structure, lipids, and fatty acids. Finally, PFOS and PFOA caused a decrease in A6 cell numbers compared to controls, whereas PFBS and PFNA did not significantly change cell population levels. Overall, this work highlights the ability of PFASs to alter A6 cells, whether forming monolayers or differentiated into dome structures, and the potential of PFOS and PFOA to induce cell death. PMID:27078751

  13. Total sulfur determination in residues of crude oil distillation using FT-IR/ATR and variable selection methods.

    Science.gov (United States)

    Müller, Aline Lima Hermes; Picoloto, Rochele Sogari; de Azevedo Mello, Paola; Ferrão, Marco Flores; de Fátima Pereira dos Santos, Maria; Guimarães, Regina Célia Lourenço; Müller, Edson Irineu; Flores, Erico Marlon Moraes

    2012-04-01

    Total sulfur concentration was determined in atmospheric residue (AR) and vacuum residue (VR) samples obtained from petroleum distillation process by Fourier transform infrared spectroscopy with attenuated total reflectance (FT-IR/ATR) in association with chemometric methods. Calibration and prediction set consisted of 40 and 20 samples, respectively. Calibration models were developed using two variable selection models: interval partial least squares (iPLS) and synergy interval partial least squares (siPLS). Different treatments and pre-processing steps were also evaluated for the development of models. The pre-treatment based on multiplicative scatter correction (MSC) and the mean centered data were selected for models construction. The use of siPLS as variable selection method provided a model with root mean square error of prediction (RMSEP) values significantly better than those obtained by PLS model using all variables. The best model was obtained using siPLS algorithm with spectra divided in 20 intervals and combinations of 3 intervals (911-824, 823-736 and 737-650 cm(-1)). This model produced a RMSECV of 400 mg kg(-1) S and RMSEP of 420 mg kg(-1) S, showing a correlation coefficient of 0.990. Copyright © 2011 Elsevier B.V. All rights reserved.

  14. FT-IR/ATR univariate and multivariate calibration models for in situ monitoring of sugars in complex microalgal culture media.

    Science.gov (United States)

    Girard, Jean-Michel; Deschênes, Jean-Sébastien; Tremblay, Réjean; Gagnon, Jonathan

    2013-09-01

    The objective of this work is to develop a quick and simple method for the in situ monitoring of sugars in biological cultures. A new technology based on Attenuated Total Reflectance-Fourier Transform Infrared (FT-IR/ATR) spectroscopy in combination with an external light guiding fiber probe was tested, first to build predictive models from solutions of pure sugars, and secondly to use those models to monitor the sugars in the complex culture medium of mixotrophic microalgae. Quantification results from the univariate model were correlated with the total dissolved solids content (R(2)=0.74). A vector normalized multivariate model was used to proportionally quantify the different sugars present in the complex culture medium and showed a predictive accuracy of >90% for sugars representing >20% of the total. This method offers an alternative to conventional sugar monitoring assays and could be used at-line or on-line in commercial scale production systems. Copyright © 2013 Elsevier Ltd. All rights reserved.

  15. Development of an LS-DYNA Model of an ATR42-300 Aircraft for Crash Simulation

    Science.gov (United States)

    Jackson, Karen E.; Fasanella, Edwin L.

    2004-01-01

    This paper describes the development of an LS-DYNA simulation of a vertical drop test of an ATR42-300 twin-turboprop high-wing commuter-class airplane. A 30-ft/s drop test of this aircraft was performed onto a concrete impact surface at the FAA Technical Center on July 30, 2003. The purpose of the test was to evaluate the structural response of a commuter-class aircraft when subjected to a severe, but survivable, impact. The aircraft was configured with crew and passenger seats, anthropomorphic test dummies, forward and aft luggage, instrumentation, and onboard data acquisition systems. The wings were filled with approximately 8,700 lb. of water to represent the fuel and the aircraft weighed a total of 33,200 lb. The model, which consisted of 57,643 nodes and 62,979 elements, was developed from direct measurements of the airframe geometry, over a period of approximately 8 months. The seats, dummies, luggage, fuel, and other ballast were represented using concentrated masses. Comparisons were made of the structural deformation and failure behavior of the airframe, as well as selected acceleration time history responses.

  16. UV-vis and FTIR-ATR characterization of 9-fluorenon-2-carboxyester/(2-hydroxypropyl)-beta-cyclodextrin inclusion complex.

    Science.gov (United States)

    Stancanelli, R; Ficarra, R; Cannavà, C; Guardo, M; Calabrò, M L; Ficarra, P; Ottanà, R; Maccari, R; Crupi, V; Majolino, D; Venuti, V

    2008-08-05

    In this work, the usefulness of (2-hydroxypropyl)-beta-cyclodextrin (HP-beta-CyD) as a tool to form an inclusion complex with 9-fluorenonic derivative (AG11) has been investigated, in pure water, by UV absorption. Phase-solubility diagrams allowed the determination of the association constant between AG11 and HP-beta-CyD. At the same time, solid binary systems between AG11 and HP-beta-CyD have been prepared in 1:1 stoichiometry by co-precipitation method. In order to confirm the complexation, FTIR spectroscopy in ATR geometry measurements have been performed and the results have been compared with the free compounds and the corresponding physical mixture in the same molar ratio. The nature of the interactions between AG11 and HP-beta-CyD has been elucidated also by applying mathematical procedures such as deconvolution and curve fitting. Improvement of the aqueous solubility is expected to improve the bioavailability of the drug in oral administration.

  17. Raman and ATR FTIR spectroscopy in reactive crystallization: Simultaneous monitoring of solute concentration and polymorphic state of the crystals

    Science.gov (United States)

    Qu, Haiyan; Alatalo, Hannu; Hatakka, Henry; Kohonen, Jarno; Louhi-Kultanen, Marjatta; Reinikainen, Satu-Pia; Kallas, Juha

    2009-06-01

    Batch-reactive crystallization of the two polymorphs of L-glutamic acid was studied using in-line Raman and ATR FTIR spectroscopy. It was observed that the barrier to the nucleation of the stable β-form was higher, and thus the occurrence of β-form nucleation requires a higher supersaturation level. The local supersaturation level inside the reactive crystallizer is significantly affected by the feeding manner of the reactant. When the reactant was fed to a poorly mixed zone, such as the surface of the liquid, a high local supersaturation level was generated near the feeding point. This high local supersaturation level drastically increased with the increase in the concentrations of the reactants. As a consequence, the fraction of the β-form increased with the increase in reactants concentrations. On the other hand, feeding the reactant to a well-mixed zone near the impeller can avoid the occurrence of high local supersaturation, and therefore the dependence of the polymorphic composition of the final product on the concentration of the reactants can be reduced. The information obtained from the spectroscopy leads to improved understanding of the precipitation process and offers great potential for process optimization and control of crystalline quality.

  18. The Dimeric Architecture of Checkpoint Kinases Mec1ATR and Tel1ATM Reveal a Common Structural Organization.

    Science.gov (United States)

    Sawicka, Marta; Wanrooij, Paulina H; Darbari, Vidya C; Tannous, Elias; Hailemariam, Sarem; Bose, Daniel; Makarova, Alena V; Burgers, Peter M; Zhang, Xiaodong

    2016-06-24

    The phosphatidylinositol 3-kinase-related protein kinases are key regulators controlling a wide range of cellular events. The yeast Tel1 and Mec1·Ddc2 complex (ATM and ATR-ATRIP in humans) play pivotal roles in DNA replication, DNA damage signaling, and repair. Here, we present the first structural insight for dimers of Mec1·Ddc2 and Tel1 using single-particle electron microscopy. Both kinases reveal a head to head dimer with one major dimeric interface through the N-terminal HEAT (named after Huntingtin, elongation factor 3, protein phosphatase 2A, and yeast kinase TOR1) repeat. Their dimeric interface is significantly distinct from the interface of mTOR complex 1 dimer, which oligomerizes through two spatially separate interfaces. We also observe different structural organizations of kinase domains of Mec1 and Tel1. The kinase domains in the Mec1·Ddc2 dimer are located in close proximity to each other. However, in the Tel1 dimer they are fully separated, providing potential access of substrates to this kinase, even in its dimeric form. © 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

  19. The Dimeric Architecture of Checkpoint Kinases Mec1ATR and Tel1ATM Reveal a Common Structural Organization*

    Science.gov (United States)

    Sawicka, Marta; Wanrooij, Paulina H.; Darbari, Vidya C.; Tannous, Elias; Hailemariam, Sarem; Bose, Daniel; Makarova, Alena V.; Burgers, Peter M.; Zhang, Xiaodong

    2016-01-01

    The phosphatidylinositol 3-kinase-related protein kinases are key regulators controlling a wide range of cellular events. The yeast Tel1 and Mec1·Ddc2 complex (ATM and ATR-ATRIP in humans) play pivotal roles in DNA replication, DNA damage signaling, and repair. Here, we present the first structural insight for dimers of Mec1·Ddc2 and Tel1 using single-particle electron microscopy. Both kinases reveal a head to head dimer with one major dimeric interface through the N-terminal HEAT (named after Huntingtin, elongation factor 3, protein phosphatase 2A, and yeast kinase TOR1) repeat. Their dimeric interface is significantly distinct from the interface of mTOR complex 1 dimer, which oligomerizes through two spatially separate interfaces. We also observe different structural organizations of kinase domains of Mec1 and Tel1. The kinase domains in the Mec1·Ddc2 dimer are located in close proximity to each other. However, in the Tel1 dimer they are fully separated, providing potential access of substrates to this kinase, even in its dimeric form. PMID:27129217

  20. The Conference Proceedings of the 2001 Air Transport Research Society (ATRS) of the WCTR Society. Volume 2

    Science.gov (United States)

    Lee, Yeong-Heok (Editor); Bowen, Brent D. (Editor); Tarry, Scott E. (Editor)

    2001-01-01

    The ATRS held its 5th Annual conference at the City University of Hong Kong Campus in July 2001. The conference was a success with nearly 140 participants including 70 presenters. Titles that comprise Volume 2 include: Intelligent Airport Gate Assignment System; A Study on the Effects of the Personality Compatibility to the Job Performance; ITS/CVO Application for Air cargo Transportation in Korea; An Airport as a Logistics and Economic Hub: The Case of Incheon International Airport; The Impact Of Aviation Safety over the Consumer's Behavior; The Integration of China and Taiwan Air Networks for Direct Air Cargo Services; Quality perception and carrier choice in Civil Aviation; Future Trends in Business Travel Decision Making; Cooperation Among German Airports in Europe; Inbound and Outbound Air Passenger Traffic Forecasting between the United States and Selected Asian countries; An Evaluation of Alternative Facilities for Airport Redevelopment using Fuzzy Linguistic Approach; Economic Analysis of Airline Alliances; The Aviation Cooperation between the two Koreas Preparing for the Reunification of the Peninsula; and A Study on the Air Transport Cooperation in Northeast Asia between China, Japan and Korea.

  1. In situ monitoring of an escherichia coli fermentation using a diamond composition ATR probe and mid-infrared spectroscopy

    Science.gov (United States)

    Doak; Phillips

    1999-05-01

    A diamond composition ATR probe was used in situ to obtain IR spectra on replicate Escherichia coli fermentations involving a complex medium. The probe showed excellent stability over a 6-month operating period and was unaffected by either agitation or aeration. The formation of an unknown was observed from IR spectra obtained during the sterilization; subsequent experiments proved this to be a reaction product between yeast extract and the phosphates used as buffer salts. Partial-least-squares-based calibration/prediction models were developed for both glucose and acetate using in-process samples. The resulting models had prediction errors of +/-0.26 and +/-0.75 g/L for glucose and acetic acid, respectively, errors which were statistically equivalent to the estimated experimental errors in the reference measurements. Relative concentration profiles for the unknown formed during sterilization could be generated either by tracking peak height at an independent wavelength or by self-modeling curve resolution of the spectral region overlapping that of glucose. These profiles indicated that this compound was metabolized simultaneously with glucose; upon depletion of the glucose, when the microorganism switched to consumption of acetic acid, utilization continued but at a lower rate. The data presented provide an extensive characterization of the performance characteristics of this in situ analysis and clearly demonstrate its utility not just in the quantitative measurement of multiple known species but in the qualitative evaluation of unknown species.

  2. ;Host-guest; interactions in Captisol®/Coumestrol inclusion complex: UV-vis, FTIR-ATR and Raman studies

    Science.gov (United States)

    Venuti, Valentina; Stancanelli, Rosanna; Acri, Giuseppe; Crupi, Vincenza; Paladini, Giuseppe; Testagrossa, Barbara; Tommasini, Silvana; Ventura, Cinzia Anna; Majolino, Domenico

    2017-10-01

    The ability of Captisol® (sulphobutylether-β-cyclodextrin, SBE-β-CD), to form inclusion complexes, both in solution and in the solid state, has been tested in order to improve some unfavorable chemical-physical characteristics, such as poor solubility in water, of a bioflavonoid, Coumestrol (Coum), well known for its anti-oxidant, anti-inflammatory, anti-fungal and anti-viral activity. In pure water, a phase-solubility study was carried out to evaluate the enhancement of the solubility of Coum and, therefore, the occurred complexation with the macrocycle. The stoichiometry and the stability constant of the SBE-β-CD/Coum complex were calculated with the phase solubility method and through the Job's plot. After that, the solid SBE-β-CD/Coum complex was prepared utilizing a kneading method. The spectral changes induced by complexation on characteristic vibrational band of Coum were complementary investigated by Fourier transform infrared spectroscopy in attenuated total reflectance geometry (FTIR-ATR) and Raman spectroscopy, putting into evidence the guest chemical groups involved in the ;host-guest; interactions responsible of the formation and stabilization of the complex. Particular attention was paid to the Cdbnd O and Osbnd H stretching vibrations, whose temperature-evolution respectively furnished the enthalpy changes associated to the binding of host and guest in solid phase and to the reorganization of the hydrogen bond scheme upon complexation. From the whole set of results, an inclusion geometry is also proposed.

  3. Adsorption/oxidation of CO on highly dispersed Pt catalyst studied by combined electrochemical and ATR-FTIRAS methods

    Energy Technology Data Exchange (ETDEWEB)

    Sato, T.; Kunimatsu, K. [Clean Energy Research Center, University of Yamanashi, 4 Takeda, Kofu 400-8510 (Japan); Uchida, H. [Interdisciplinary Graduate School of Medicine and Engineering, University of Yamanashi, 4 Takeda, Kofu 400-8510 (Japan); Watanabe, M. [Clean Energy Research Center, University of Yamanashi, 4 Takeda, Kofu 400-8510 (Japan)], E-mail: m-watanabe@yamanashi.ac.jp

    2007-12-20

    Elecrochemical ATR-FTIRAS measurements were conducted for the first time to investigate nature of CO adsorbed under potential control on a highly dispersed Pt catalyst with average particle size of 2.6 nm supported on carbon black (Pt/C) and carbon un-supported Pt black catalyst (Pt-B). Each catalyst was uniformly dispersed by 10 {mu}g Pt/cm{sup 2} and fixed by Nafion film of 0.05 {mu}m thick on a gold film chemically deposited on a Si ATR prism window. Adsorption of CO was conducted at 0.05 V on the catalysts in 1 and 100% CO atmospheres, for which CO coverage, {theta}{sub CO}, was 0.69 and 1, respectively. Two well-defined {nu}(CO) bands free from band anomalies assigned to atop CO (CO(L)) and symmetrically bridge bonded CO (CO(B){sub sym.}) were observed. It was newly found that the CO(L) band was spitted into two well-defined peaks, particularly in 1% CO, from very early stage of adsorption, which was interpreted in terms of simultaneous occupation of terrace and step-edge sites, denoted as CO(L){sub terrace} and CO(L){sub edge}, respectively. This simultaneous occupation was commonly observed in our work both on Pt/C and Pt-B. A new band was also observed around 1950 cm{sup -1} in addition to the bands of CO(L) and CO(B){sub sym.}, which was assigned to asymmetric bridge CO, CO(B){sub asym.}, adsorbed on (1 0 0) terraces, based on our previous ECSTM observation of CO adsorption structures on (1 0 0) facet. The CO(B){sub asym.} on the Pt/C, particularly in 100% CO atmosphere, results in growth of a sharp band at 3650 cm{sup -1} accompanied by a concomitant development of a band around 3500 cm{sup -1}. The former and the latter are assigned to {nu}(OH) vibrations of non-hydrogen bonded and hydrogen bonded water molecules adsorbed on Pt, respectively, interpreted in term of results from a bond scission of the existing hydrogen bonded networks by CO(L)s and from a promotion of new hydrogen bonding among water molecules presumably by CO(B){sub asym.}. It was found

  4. PERLINDUNGAN HUKUM PEMEGANG HAK ATAS TANAH BERDASARKAN JUAL BELI DI BAWAH TANGAN (Kajian Terhadap Putusan Nomor: 1860K/Pdt/2005

    Directory of Open Access Journals (Sweden)

    Ketut Dezy Ari Utami

    2015-06-01

    Full Text Available Abstract This thesis behind this is the norm of any conflict between the sale and purchase agreement made by the Plaintiff husband (deceased Suwadi with Sri Lestari sealed with receipt in Decision No. 1860 K/Pdt/2005 with the principle of legal certainty. The problems studied in this thesis are: 1 Is the sale of land under the hand without the presence of witnesses can be justified by the law. 2 What are the forms of legal protection of land rights holders in the sale and purchase under the hand without the presence of witnesses? To answer the problem studied, the authors use the method of normative approach. Based on the results of the study, the authors obtained answers to existing problems, namely the purchase agreement sealed on top of the basic elements of the agreement have met or commonly referred to the "essentialia". The first is preventative protection of land registration. Second, legislation, legal protection represeif: First, do a lawsuit to district court, the Second, compensation sanctions.   Key words: protection law, land rights, sale   Abstrak Tujuan dari penulisan jurnal ini adalah untuk mengetahui dan menganalisis apakah jual beli tanah dibawah tangan tanpa dihadiri oleh saksi dapat dibenarkan oleh hukum dan bagaimana bentuk perlindungan hukum pemegang hak atas tanah dalam jual beli  dibawah tangan tanpa dihadiri oleh saksi. Metode penelitian yang digunakan dalam penulisan jurnal ini adalah penelitian normatif yang menggunakan pendekatan perundang-undangan (statue approach dan pendekatan konsep (conseptual approach. Berdasarkan hasil penelitian, penulis memperoleh jawaban atas permasalahan yang ada, yaitu perjanjian jual beli bersegel di atas telah memenuhi unsur pokok perjanjian atau biasa disebut dengan unsur “essentialia”. Menyikapi hal-hal tersebut di atas,Perjanjan jual beli haruslah memperhatikan asas itikad baik dan juga asas-asas perjanjian lainnya yang harus menjadi dasar pijakan para pihak dalam membuat suatu

  5. Penentuan Batas Pengelolaan Wilayah Laut Antara Provinsi Jawa Timur dan Provinsi Bali Berdasarkan Undang-Undang Republik Indonesia Nomor 23 Tahun 2014

    Directory of Open Access Journals (Sweden)

    Rainhard Sumarto Simatupang

    2017-01-01

    pengelolaan wilayah laut daerah sesuai lokasi penelitian ini yang sudah berdasarkan UU No. 23 Tahun 2014 

  6. PENDEKATAN MULTIVARIAT UNTUK PENGUKURAN KUALITAS TOMAT (Lycopersicon esculentum BERDASARKAN PARAMETER WARNA Multivariate Approach to The Measurement of Tomato (Lycopersicon esculentum Quality Based on Color Parameters

    Directory of Open Access Journals (Sweden)

    Rudiati Evi Masithoh

    2012-05-01

    Full Text Available In this study, multivariate linear regression (MLR was used to predict the content of Brix, total carotene, citric acid,and vitamin C of tomato based on RGB color parameters. Tomatoes were stored at 6 °C and 28 °C then their quality parameters were measured. R, G, and B values were measured non-destructively using computer vision system developed in the previous study. Brix, total carotene, citric acid, and vitamin C were determined by conventional procedures in the laboratory. Data analysis showed that the MLR calibration models could be used to predict Brix, total carotene, citric acid, and vitamin C with R2  of  0.77and 0.72, 0.902 and 0.85, 0.71 and 0.77, as well as 0.88 and 0.82 for temperature of 6 °C and 28 °C, respectively. ABSTRAK Pada penelitian ini, multivariate linier regression (MLR digunakan untuk memprediksi kandungan Brix, karoten total,asam sitrat, dan vitamin C dari tomat berdasarkan parameter warna RGB. Tomat disimpan pada suhu 6 °C dan 28 °C kemudian diukur parameter kualitasnya. Nilai R, G, dan B diukur secara non-destructive dari computer vision system yang dikembangkan pada penelitian sebelumnya. Parameter kualitas Brix, karoten total, asam sitrat, dan vitamin C ditentukan secara destructive dengan prosedur konvensional di laboratorium. Analisis data menunjukkan bahwa model kalibrasi MLR dapat digunakan untuk memprediksi Brix, karoten total, asam sitrat, dan vitamin C dengan R2 sebesar0,77dan 0,72, 0,902 dan 0,85, 0,71 dan 0,77, serta 0,88 dan 0,82 untuk suhu 6 °C dan 28 °C secara berturutan.

  7. An ATR-FTIR study of sulphate sorption on magnetite; rate of adsorption, surface speciation, and effect of calcium ions.

    Science.gov (United States)

    Roonasi, Payman; Holmgren, Allan

    2009-05-01

    The adsorption of sulphate on magnetite was studied in-situ using ATR-FTIR spectroscopy. Synthetic magnetite particles were deposited on a ZnSe internal reflection element and the spectra of sulphate adsorbed at pH 4-8.5 were recorded. Two different ionic strengths were used viz. 0.01 M and 0.1 M NaCl. The spectra of adsorbed sulphate on magnetite coated ZnSe were compared with the spectra of sulphate solutions at the same pH values and in contact with uncoated ZnSe. The spectrum of adsorbed sulphate at pH 4 showed three maxima at 979, 1044, and 1115 cm(-1) indicating a monodentate adsorption in which the T(d) symmetry of SO(4)(2-) is lowered to C(3v). At pH 6.5, sulphate adsorbed as an outer-sphere complex with two weak bands appearing at 1102 and 980 cm(-1). Moreover, spectra of the adsorbed sulphate at pH 4 were recorded as a function of time and sulphate concentration. The equilibrium absorbance at different concentrations fitted a Langmuir type adsorption isotherm. The Langmuir affinity constant K at pH 4 was determined from the slope and intercept of the Langmuir plot to be K=1.2344x10(4) M(-1) and the Gibbs free energy of adsorption DeltaG(ads)(0) was estimated from this value to be -33.3 kJ/mol. Kinetic analysis indicated that adsorption at pH 4 is fast, whilst the desorption kinetic at the same pH is very slow. In addition, the effect of Ca ions on sulphate adsorption was also studied. It was shown that Ca ions increased the sulphate adsorption on magnetite at pH 8.5.

  8. Sorption of phosphate onto mesoporous γ-alumina studied with in-situ ATR-FTIR spectroscopy

    Directory of Open Access Journals (Sweden)

    Zheng Ting-Ting

    2012-04-01

    Full Text Available Abstract Background Due to the extensive use of phosphates in industry, agriculture and households, the phosphate - γ-alumina interactions are important for understanding its detrimental contribution to eutrophication in lakes and rivers. In situ Fourier transform infrared (FTIR spectroscopy can provide more detailed information on the adsorbate-adsorbent interaction and the formation of hydrogen bonds. Results In situ ATR-FTIR spectroscopy was used to identify phosphate complexes adsorbed within the three-dimensional network of mesoporous γ-alumina at pH 4.1 and 9.0. The integrated intensity between 850 cm-1 and 1250 cm-1 was used as a relative measure of the amount of adsorbed phosphate. The integrated intensity proved to be about 3 times higher at pH 4.1 as compared with the corresponding intensity at pH 9.0. The adsorption of phosphate at the two pH conditions could be well described by the Langmuir adsorption isotherm at low concentrations and the empirical Freundlich adsorption isotherm for the whole concentration range, viz. 5 – 2000 μM. Conclusions From the band shape of infrared spectra at pH 4.1 and pH 9.0, it was proposed that the symmetry of the inner-sphere surface complex formed between phosphate and γ-alumina was C1 at the lower pH value, whilst the higher value (9.0 implied a surface complex with C2v or C1 symmetry. The difference in adsorbed amount of phosphate at the two pH values was ascribed to the reduced fraction of ≡ AlOH2+ surface sites and the increased fraction of ≡ AlO- sites upon increasing pH from 4 to 9.

  9. Evaluating and Modeling the Internal Diffusion Behaviors of Microencapsulated Rejuvenator in Aged Bitumen by FTIR-ATR Tests

    Directory of Open Access Journals (Sweden)

    Junfeng Su

    2016-11-01

    Full Text Available Microencapsulated rejuvenator has been attracted much attention for self-healing bitumen. The diffusion coefficient is one of the key parameters to estimate the feasibility of rejuvenator to age bitumen. The objective of this research was to evaluate diffusion behaviors of microencapsulated rejuvenator in aged bitumen by a FTIR-ATR method. Various microcapsule samples were mixed in bitumen to form thin films. The core material of microcapsules used as rejuvenator was diphenylsilane (DPS, its fairly specific absorption band at 843 cm−1 was selected as a marker band to calculate the diffusion coefficient (D. The microstructure parameters, including contents, mean size and mean shell thickness of microcapsules, were considered to understand the diffusion behaviors under different temperatures (20, 30, 40 and 50 °C in bitumen. The results showed that a larger mean size of microcapsules did not greatly affect the D values under the same temperature. In contrast, a higher mean shell thickness decreased the D values because of the decrement of damage probability of microcapsules under the same content. With the same microcapsule sample in bitumen, the D values presented a trend of linear increase when the content of microcapsules was increased. All these results indicated that the microstructure affected the diffusion behaviors based on the concentration of released rejuvenator. A preliminary model of diffusion behaviors of microencapsulated rejuvenator in bitumen was given based on the Arrhenius equation considering the microstructure of microcapsules, the amount of released rejuvenator and the age degree of bitumen. This model may be a guide to the construction and application of self-healing bitumen using microcapsules.

  10. ATR-p53 restricts homologous recombination in response to replicative stress but does not limit DNA interstrand crosslink repair in lung cancer cells.

    Directory of Open Access Journals (Sweden)

    Bianca M Sirbu

    Full Text Available Homologous recombination (HR is required for the restart of collapsed DNA replication forks and error-free repair of DNA double-strand breaks (DSB. However, unscheduled or hyperactive HR may lead to genomic instability and promote cancer development. The cellular factors that restrict HR processes in mammalian cells are only beginning to be elucidated. The tumor suppressor p53 has been implicated in the suppression of HR though it has remained unclear why p53, as the guardian of the genome, would impair an error-free repair process. Here, we show for the first time that p53 downregulates foci formation of the RAD51 recombinase in response to replicative stress in H1299 lung cancer cells in a manner that is independent of its role as a transcription factor. We find that this downregulation of HR is not only completely dependent on the binding site of p53 with replication protein A but also the ATR/ATM serine 15 phosphorylation site. Genetic analysis suggests that ATR but not ATM kinase modulates p53's function in HR. The suppression of HR by p53 can be bypassed under experimental conditions that cause DSB either directly or indirectly, in line with p53's role as a guardian of the genome. As a result, transactivation-inactive p53 does not compromise the resistance of H1299 cells to the interstrand crosslinking agent mitomycin C. Altogether, our data support a model in which p53 plays an anti-recombinogenic role in the ATR-dependent mammalian replication checkpoint but does not impair a cell's ability to use HR for the removal of DSB induced by cytotoxic agents.

  11. Planificación en fútbol según el modelo ATR en comparación con los modelos tradicionales

    OpenAIRE

    García Prada, Oscar

    2013-01-01

    El presente trabajo busca el desarrollo de una planificación en fútbol comparando los diferentes modelos de planificación. Se basa en la contraposición entre los modelos tradicionales y los contemporáneos, siendo el modelo ATR el más adecuado para la planificación de una temporada de fútbol. El trabajo se desarrolla desde un marco teórico englobando las diferentes características y fases en el desarrollo de una planificación así como los pasos a seguir para su correcto desarrol...

  12. Formation of carboxy- and amide-terminated alkyl monolayers on silicon(111) investigated by ATR-FTIR, XPS, and X-ray scattering: Construction of photoswitchable surfaces

    DEFF Research Database (Denmark)

    Rück-Braun, Karola; Petersen, Michael Åxman; Michalik, Fabian

    2013-01-01

    zigzag-like substitution pattern for the ester- and carboxy-terminated monolayer. Hydrolysis of the remaining H-Si(111) bonds at the surface furnished HO-Si(111) groups according to XPS and attenuated total reflection Fourier-transform infrared spectroscopy (ATR-FTIR) studies. The amide-terminated alkyl...... acid end-group. X-ray photoelectron spectroscopy (XPS) and grazing incidence X-ray diffraction (GIXD) indicate a surface coverage of about 50% of the initially H-terminated sites. In agreement, GIXD implies a rectangular unit mesh of 6.65 and 7.68 Å side lengths, containing two molecules in a regular...

  13. Revisiting the Brønsted acid catalysed hydrolysis kinetics of polymeric carbohydrates in ionic liquids by in situ ATR-FTIR spectroscopy

    DEFF Research Database (Denmark)

    Kunov-Kruse, Andreas Jonas; Riisager, Anders; Shunmugavel, Saravanamurugan

    2013-01-01

    A new versatile method to measure rates and determine activation energies for the Brønsted acid catalysed hydrolysis of cellulose and cellobiose (and other polymeric carbohydrates) in ionic liquids is demonstrated by following the C–O stretching band of the glycoside bond with in situ ATR......-FTIR. An activation energy in excellent agreement with the literature was determined for cellulose hydrolysis, whereas a distinctly lower activation energy was determined for cellobiose hydrolysis. The methodology also allowed to independently determine activation energies for the formation of 5-hydroxymethylfurfural...

  14. Characterization of microRNA-125b expression in MCF7 breast cancer cells by ATR-FTIR spectroscopy.

    Science.gov (United States)

    Ozek, Nihal Simsek; Tuna, Serkan; Erson-Bensan, A Elif; Severcan, Feride

    2010-12-01

    MicroRNAs (miRNAs), are ~22 nucleotides long, non-coding RNAs that control gene expression post-transcriptionally by binding to their target mRNA's 3'UTRs (untranslated regions). Due to their roles in various important regulatory processes and pathways, miRNAs have been implicated in disease mechanisms such as tumorigenesis when their expression is deregulated. To date, a significant number of miRNAs and their target messenger RNAs (mRNAs) have been identified and verified. It is generally accepted that miRNAs can potentially bind to many mRNAs, which brings the requirement of validation of these interactions. While understanding that such individual interactions is crucial to delineate the role of a specific miRNA, we took a holistic approach and analyzed global changes in the cell due to expression of a miRNA in a model cell line system. Our model consisted of MCF7 cells stably transfected with miR-125b (MCF7-125b) and empty vector (MCF7-EV). MiR-125b is one of the known down-regulated miRNAs in breast cancers. In this study we examined the global structural changes in MCF7 cells lacking and expressing miR-125b by Attenuated Total Reflectance Fourier Transform Infrared (ATR-FTIR) Spectroscopy and investigated the dynamic changes by more sensitive spin-labelling Electron Spin Resonance (ESR) spectroscopy. Our results revealed less RNA, protein, lipid, and glycogen content in MCF7-125b compared to MCF7-EV cells. Membrane fluidity and proliferation rate were shown to be lower in MCF7-125b cells. Based on these changes, MCF7-125b and MCF7-EV cells were discriminated successfully by cluster analysis. Here, we provide a novel means to understand the global effects of miRNAs in cells. Potential applications of this approach are not only limited to research purposes. Such a strategy is also promising to pioneer the development of future diagnostic tools for deregulated miRNA expression in patient samples.

  15. Kinetic and Conformational Insights of Protein Adsorption onto Montmorillonite Revealed Using in Situ ATR-FTIR/2D-COS.

    Science.gov (United States)

    Schmidt, Michael P; Martínez, Carmen Enid

    2016-08-09

    Protein adsorption onto clay minerals is a process with wide-ranging impacts on the environmental cycling of nutrients and contaminants. This process is influenced by kinetic and conformational factors that are often challenging to probe in situ. This study represents an in situ attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopic investigation of the adsorption of a model protein (bovine serum albumin (BSA)) onto a clay mineral (montmorillonite) at four concentrations (1.50, 3.75, 7.50, and 15.0 μM) under environmentally relevant conditions. At all concentrations probed, FTIR spectra show that BSA readily adsorbs onto montmorillonite. Adsorption kinetics follow an Elovich model, suggesting that primary limitations on adsorption rates are surface-related heterogeneous energetic restrictions associated with protein rearrangement and lateral protein-protein interaction. BSA adsorption onto montmorillonite fits the Langmuir model, yielding K = 5.97 × 10(5) M(-1). Deconvolution and curve fitting of the amide I band at the end of the adsorption process (∼120 min) shows a large extent of BSA unfolding upon adsorption at 1.50 μM, with extended chains and turns increasing at the expense of α-helices. At higher concentrations/surface coverages, BSA unfolding is less pronounced and a more compact structure is assumed. Two-dimensional correlation spectroscopic (2D-COS) analysis reveals three different pathways corresponding to adsorbed conformations. At 1.50 μM, adsorption increases extended chains, followed by a loss in α-helices and a subsequent increase in turns. At 3.75 μM, extended chains decrease and then aggregated strands increase and side chains decrease, followed by a decrease in turns. With 7.50 and 15.0 μM BSA, the loss of side-chain vibrations is followed by an increase in aggregated strands and a subsequent decrease in turns and extended chains. Overall, the BSA concentration and resultant surface coverage have a profound

  16. Formación de investigadores en medicina familiar: El modelo de tutorización en investigación Asesor-Tutor-Residente (ATR Researchers training on family medicine: The tutoring model in investigation advisory-tutor-resident (ATR

    Directory of Open Access Journals (Sweden)

    E. Raúl Ponce Rosas

    2003-04-01

    Full Text Available El tutor de la medicina de familia, los principios y características de la tutoría y la relación tutor-residente son elementos fundamentales para el desarrollo adecuado de los cursos de especialización de esta disciplina. La tutoría o tutorización en medicina familiar es la base de la docencia y se centra en la figura de una relación humana de enseñanza individualizada tutor-residente en la práctica asistencial, docente y de investigación. Los modelos de tutorización en medicina de familia proporcionan herramientas útiles para establecer una adecuada relación tutor-residente. En este trabajo se describe el modelo de tutorización en investigación Asesor-Tutor-Residente, que se lleva a cabo en el Curso de Especialización de Medicina Familiar en la Facultad de Medicina de la UNAM, México. El modelo de tutorización en investigación Asesor-Tutor-Residente (ATR, es un paradigma de capacitación teórico-práctico en esta importante y fundamental área de la medicina de familia. El modelo ATR pretende motivar e interesar a tutores y residentes para hacer investigación con base en la demostración y la supervisión formativa a través de la asesoría continua, reflexiva, planeada y sistematizada.The tutor of the family medicine, the principles and characteristics of the tutorship, and the relationship tutor-resident they are fundamental elements for the appropriate development of the courses of specialization of this discipline. The tutorship or tutoring in family medicine are the base of the teaching and it is centered in the figure of a human relationship of teaching individualized tutor-resident in the assistance, educational practice and investigation. The tutoring models in family medicine provide useful tools to establish an appropriate relationship tutor-resident. In this work is describe the tutoring model in investigation "advisory-tutor-resident" (ATR that is carried out in the Course of Specialization of Family Medicine in

  17. Kaposi sarcoma herpes virus latency associated nuclear antigen protein release the G2/M cell cycle blocks by modulating ATM/ATR mediated checkpoint pathway.

    Directory of Open Access Journals (Sweden)

    Amit Kumar

    Full Text Available The Kaposi's sarcoma-associated herpesvirus infects the human population and maintains latency stage of viral life cycle in a variety of cell types including cells of epithelial, mesenchymal and endothelial origin. The establishment of latent infection by KSHV requires the expression of an unique repertoire of genes among which latency associated nuclear antigen (LANA plays a critical role in the replication of the viral genome. LANA regulates the transcription of a number of viral and cellular genes essential for the survival of the virus in the host cell. The present study demonstrates the disruption of the host G2/M cell cycle checkpoint regulation as an associated function of LANA. DNA profile of LANA expressing human B-cells demonstrated the ability of this nuclear antigen in relieving the drug (Nocodazole induced G2/M checkpoint arrest. Caffeine suppressed nocodazole induced G2/M arrest indicating involvement of the ATM/ATR. Notably, we have also shown the direct interaction of LANA with Chk2, the ATM/ATR signalling effector and is responsible for the release of the G2/M cell cycle block.

  18. Estimation of the age of human bloodstains under the simulated indoor and outdoor crime scene conditions by ATR-FTIR spectroscopy.

    Science.gov (United States)

    Lin, Hancheng; Zhang, Yinming; Wang, Qi; Li, Bing; Huang, Ping; Wang, Zhenyuan

    2017-10-16

    Estimation of the age of human bloodstains is of great importance in forensic practices, but it is a challenging task because of the lack of a well-accepted, reliable, and established method. Here, the attenuated total reflection (ATR)-Fourier transform infrared (FTIR) technique combined with advanced chemometric methods was utilized to determine the age of indoor and outdoor bloodstains up to 107 days. The bloodstain storage conditions mimicked crime scene scenarios as closely as possible. Two partial least squares regression models-indoor and outdoor models with 7-85 days-exhibited good performance for external validation, with low values of predictive root mean squared error (5.83 and 4.77) and high R(2) values (0.94 and 0.96) and residual predictive deviation (4.08 and 5.14), respectively. Two partial least squares-discriminant analysis classification models were built and demonstrated excellent distinction between fresh (age ≤1 d) and older (age >1 d) bloodstains, which is highly valuable for forensic investigations. These findings demonstrate that ATR-FTIR spectroscopy coupled with advanced chemometric methods can be employed as a rapid and non-destructive tool for age estimation of bloodstains in real-world forensic investigation.

  19. Observations of surface-mediated reduction of Pu(VI) to Pu(IV) on hematite nanoparticles by ATR FT-IR

    Energy Technology Data Exchange (ETDEWEB)

    Emerson, Hilary P. [Florida International Univ., Applied Research Center, Miami, FL (United States); Powell, Brian A. [Clemson Univ., Dept. of Enviromental Engineering and Earth Sciences, Anderson, SC (United States)

    2015-07-01

    Previous studies have shown that mineral surfaces may facilitate the reduction of plutonium though the mechanisms of the reduction are still unknown. The objective of this study is to use batch sorption and attenuated total reflectance Fourier transform infrared spectroscopy experiments to observe the surface-mediated reduction of plutonium on hematite nanoparticles. These techniques allow for in situ measurement of reduction of plutonium with time and may lead to a better understanding of the mechanisms of surface mediated reduction of plutonium. For the first time, ATR FT-IR peaks for Pu(VI) sorbed to hematite are measured at ∝ 916 cm{sup -1}, respectively. The decrease in peak intensity with time provides a real-time, direct measurement of Pu(VI) reduction on the hematite surface. In this work pseudo first order rate constants estimated at the high loadings (22 mg{sub Pu}/g{sub hematite}, 1.34 x 10{sup -6} M{sub Pu}/m{sup 2}) for ATR FT-IR are approximately 10 x slower than at trace concentrations based on previous work. It is proposed that the reduced rate constant at higher Pu loadings occurs after the reduction capacity due to trace Fe(II) has been exhausted and is dependent on the oxidation of water and possibly electron shuttling based on the semiconducting nature of hematite. Therefore, the reduction rate at higher loadings is possibly due to the thermodynamic favorability of Pu(IV)-hydroxide complexes.

  20. SUV2, which encodes an ATR-related cell cycle checkpoint and putative plant ATRIP, is required for aluminium-dependent root growth inhibition in Arabidopsis.

    Science.gov (United States)

    Sjogren, Caroline A; Larsen, Paul B

    2017-09-01

    A suppressor mutagenesis screen was conducted in order to identify second site mutations that could reverse the extreme hypersensitivity to aluminium (Al) seen for the Arabidopsis mutant, als3-1. From this screen, it was found that a loss-of-function mutation in the previously described SUV2 (SENSITIVE TO UV 2), which encodes a putative plant ATRIP homologue that is a component of the ATR-dependent cell checkpoint response, reversed the als3-1 phenotype. This included prevention of hallmarks associated with als3-1 including Al-dependent terminal differentiation of the root tip and transition to endoreduplication. From this analysis, SUV2 was determined to be required for halting cell cycle progression and triggering loss of the quiescent centre (QC) following exposure to Al. In conjunction with this, SUV2 was found to have a similar role as ATR, ALT2 and SOG1 in Al-dependent stoppage of root growth, all of which are required for promotion of expression of a suite of genes that likely are part of an Al-dependent DNA damage transcriptional response. This work argues that these Al response factors work together to detect Al-dependent damage and subsequently activate a DNA damage response pathway that halts the cell cycle and subsequently promotes QC differentiation and entrance into endocycling. © 2017 John Wiley & Sons Ltd.

  1. Combined use of quantitative ED-EPMA, Raman microspectrometry, and ATR-FTIR imaging techniques for the analysis of individual particles.

    Science.gov (United States)

    Jung, Hae-Jin; Eom, Hyo-Jin; Kang, Hyun-Woo; Moreau, Myriam; Sobanska, Sophie; Ro, Chul-Un

    2014-08-21

    In this work, quantitative energy-dispersive electron probe X-ray microanalysis (ED-EPMA) (called low-Z particle EPMA), Raman microspectrometry (RMS), and attenuated total reflectance Fourier transform infrared spectroscopic (ATR-FTIR) imaging were applied in combination for the analysis of the same individual airborne particles for the first time. After examining individual particles of micrometer size by low-Z particle EPMA, consecutive examinations by RMS and ATR-FTIR imaging of the same individual particles were then performed. The relocation of the same particles on Al or Ag foils was successfully carried out among the three standalone instruments for several standard samples and an indoor airborne particle sample, resulting in the successful acquisition of quality spectral data from the three single-particle analytical techniques. The combined application of the three techniques to several different standard particles confirmed that those techniques provided consistent and complementary chemical composition information on the same individual particles. Further, it was clearly demonstrated that the three different types of spectral and imaging data from the same individual particles in an indoor aerosol sample provided richer information on physicochemical characteristics of the particle ensemble than that obtainable by the combined use of two single-particle analytical techniques.

  2. A rapid ATR-FTIR spectroscopic method for detection of sibutramine adulteration in tea and coffee based on hierarchical cluster and principal component analyses.

    Science.gov (United States)

    Cebi, Nur; Yilmaz, Mustafa Tahsin; Sagdic, Osman

    2017-08-15

    Sibutramine may be illicitly included in herbal slimming foods and supplements marketed as "100% natural" to enhance weight loss. Considering public health and legal regulations, there is an urgent need for effective, rapid and reliable techniques to detect sibutramine in dietetic herbal foods, teas and dietary supplements. This research comprehensively explored, for the first time, detection of sibutramine in green tea, green coffee and mixed herbal tea using ATR-FTIR spectroscopic technique combined with chemometrics. Hierarchical cluster analysis and PCA principle component analysis techniques were employed in spectral range (2746-2656cm -1 ) for classification and discrimination through Euclidian distance and Ward's algorithm. Unadulterated and adulterated samples were classified and discriminated with respect to their sibutramine contents with perfect accuracy without any false prediction. The results suggest that existence of the active substance could be successfully determined at the levels in the range of 0.375-12mg in totally 1.75g of green tea, green coffee and mixed herbal tea by using FTIR-ATR technique combined with chemometrics. Copyright © 2017 Elsevier Ltd. All rights reserved.

  3. Sensing cocaine in saliva with attenuated total reflection infrared (ATR-IR) spectroscopy combined with a one-step extraction method

    Science.gov (United States)

    Hans, Kerstin M.-C.; Gianella, Michele; Sigrist, Markus W.

    2012-03-01

    On-site drug tests have gained importance, e.g., for protecting the society from impaired drivers. Since today's drug tests are majorly only positive/negative, there is a great need for a reliable, portable and preferentially quantitative drug test. In the project IrSens we aim to bridge this gap with the development of an optical sensor platform based on infrared spectroscopy and focus on cocaine detection in saliva. We combine a one-step extraction method, a sample drying technique and infrared attenuated total reflection (ATR) spectroscopy. As a first step we have developed an extraction technique that allows us to extract cocaine from saliva to an almost infrared-transparent solvent and to record ATR spectra with a commercially available Fourier Transform-infrared spectrometer. To the best of our knowledge this is the first time that such a simple and easy-to-use one-step extraction method is used to transfer cocaine from saliva into an organic solvent and detect it quantitatively. With this new method we are able to reach a current limit of detection around 10 μg/ml. This new extraction method could also be applied to waste water monitoring and controlling caffeine content in beverages.

  4. MRN- and 9-1-1-Independent Activation of the ATR-Chk1 Pathway during the Induction of the Virulence Program in the Phytopathogen Ustilago maydis.

    Science.gov (United States)

    Tenorio-Gómez, María; de Sena-Tomás, Carmen; Pérez-Martín, Jose

    2015-01-01

    DNA damage response (DDR) leads to DNA repair, and depending on the extent of the damage, to further events, including cell death. Evidence suggests that cell differentiation may also be a consequence of the DDR. During the formation of the infective hypha in the phytopathogenic fungus Ustilago maydis, two DDR kinases, Atr1 and Chk1, are required to induce a G2 cell cycle arrest, which in turn is essential to display the virulence program. However, the triggering factor of DDR in this process has remained elusive. In this report we provide data suggesting that no DNA damage is associated with the activation of the DDR during the formation of the infective filament in U. maydis. We have analyzed bulk DNA replication during the formation of the infective filament, and we found no signs of impaired DNA replication. Furthermore, using RPA-GFP fusion as a surrogate marker of the presence of DNA damage, we were unable to detect any sign of DNA damage at the cellular level. In addition, neither MRN nor 9-1-1 complexes, both instrumental to transmit the DNA damage signal, are required for the induction of the above mentioned cell cycle arrest, as well as for virulence. In contrast, we have found that the claspin-like protein Mrc1, which in other systems serves as scaffold for Atr1 and Chk1, was required for both processes. We discuss possible alternative ways to trigger the DDR, independent of DNA damage, in U. maydis during virulence program activation.

  5. Detection and quantification of soymilk in cow-buffalo milk using Attenuated Total Reflectance Fourier Transform Infrared spectroscopy (ATR-FTIR).

    Science.gov (United States)

    Jaiswal, Pranita; Jha, Shyam Narayan; Borah, Anjan; Gautam, Anuj; Grewal, Manpreet Kaur; Jindal, Gaurav

    2015-02-01

    Milk consumption is steadily increasing, especially in India and China, due to rising income. To bridge the gap between supply and demand, unscrupulous milk vendors add milk-like products from vegetable sources (soymilk) to milk without declaration. A rapid detection technique is required to enforce the safety norms of food regulatory authorities. Fourier Transform Infrared (FTIR) spectroscopy has demonstrated potential as a rapid quality monitoring method and was therefore explored for detection of soymilk in milk. In the present work, spectra of milk, soymilk (SM), and milk adulterated with known quantity of SM were acquired in the wave number range of 4000-500cm(-1) using Attenuated Total Reflectance (ATR)-FTIR. The acquired spectra revealed differences amongst milk, SM and adulterated milk (AM) samples in the wave number range of 1680-1058cm(-1). This region encompasses the absorption frequency of amide-I, amide-II, amide-III, beta-sheet protein, α-tocopherol and Soybean Kunitz Trypsin Inhibitor. Principal component analysis (PCA) showed clustering of samples based on SM concentration at 5% level of significance and thus SM could be detected in milk using ATR-FTIR. The SM was best predicted in the range of 1472-1241cm(-1) using multiple linear regression with coefficient of determination (R(2)) of 0.99 and 0.92 for calibration and validation, respectively. Copyright © 2014 Elsevier Ltd. All rights reserved.

  6. Combining Mass Spectrometry and ATR-FTIR Spectroscopy to Study Phase, Diffusion and Composition of Secondary Organic Aerosol from the Ozonolysis of α-pinene

    Science.gov (United States)

    Perraud, V. M.; Finlayson-Pitts, B. J.; Waring-Kidd, C.

    2014-12-01

    Secondary organic aerosol (SOA) is ubiquitous in the atmosphere and composes a large fraction of the total aerosol budget. Recent reports from field measurements and laboratory studies show that some SOA particles are better represented by a semi-solid low viscosity tar-like material rather than a ideal liquid often assumed in regional and global models. Characterizing the phase of SOA is crucial to understanding how particles interact with trace gases and how it ultimately impacts their growth and evolution in the atmosphere. We report here laboratory studies carried out in the unique UCI large-volume, slow-flow, aerosol flow reactor. Particles from the ozonolysis of a-pinene were formed at various relative humidities (RH from < 3% to 90%) and collected onto a custom ATR-FTIR impactor. The observed impaction pattern provided insights into changes in phase/viscosity of the SOA as a function of relative humidity. In addition, attenuated total reflectance FTIR and mass spectrometry measurements provided information on simultaneous changes on composition. Application of ATR-FTIR combined with PTR-MS provided additional data on the volatility of the SOA at room temperature and diffusion coefficients of two key components pinonaldehyde and acetic acid present in the SOA. Implication for modeling the growth and ultimately the lifetime of SOA in the atmosphere will be discussed.

  7. Surface characterization of poly(L-lactic acid)-methoxy poly(ethylene glycol) diblock copolymers by static and dynamic contact angle measurements, FTIR, and ATR-FTIR.

    Science.gov (United States)

    Mert, O; Doganci, E; Erbil, H Y; Demir, A S

    2008-02-05

    The surface composition and surface free energy properties of two types of amphiphilic and semicrystalline diblock copolymers consisting of poly(L-lactic acid) coupled to (methoxy poly(ethylene glycol) (PLLA-MePEG) having differing block lengths of PEG were investigated by using static and dynamic contact angle measurements, transmission Fourier infrared spectroscopy (FTIR), and attenuated total reflection spectroscopy (ATR-FTIR) and compared with results obtained from PLLA and MePEG homopolymers. The contact angle results were evaluated by using the van Oss-Good method (acid-base method), and it was determined that the Lewis base surface tension coefficient (gamma-) of the copolymers increased with an increase of the PEG molar content at the copolymer surface. This result is in good agreement with the transmission FTIR and ATR-FTIR results but not proportional to them, indicating that the surfaces of the copolymers are highly mobile and that the molecular rearrangement takes place upon contact with a polar liquid drop. The dynamic contact angle measurements showed that the strong acid-base interaction between the oxygen atoms in the copolymer backbone of the relatively more hydrophilic PEG segments with the Lewis acidic groups of the polar and hydrogen-bonding water molecules enabled the surface molecules to restructure (conformational change) at the contact area, so that the PEG segments moved upward, whereas the apolar methyl pendant groups of PLLA segments buried downward.

  8. A Novel Zn2-Cys6 Transcription Factor AtrR Plays a Key Role in an Azole Resistance Mechanism of Aspergillus fumigatus by Co-regulating cyp51A and cdr1B Expressions

    Science.gov (United States)

    Shimizu, Kiminori; Paul, Sanjoy; Ohba, Ayumi; Gonoi, Tohru; Watanabe, Akira; Gomi, Katsuya

    2017-01-01

    Successful treatment of aspergillosis caused by Aspergillus fumigatus is threatened by an increasing incidence of drug resistance. This situation is further complicated by the finding that strains resistant to azoles, the major antifungal drugs for aspergillosis, have been widely disseminated across the globe. To elucidate mechanisms underlying azole resistance, we identified a novel transcription factor that is required for normal azole resistance in Aspergillus fungi including A. fumigatus, Aspergillus oryzae, and Aspergillus nidulans. This fungal-specific Zn2-Cys6 type transcription factor AtrR was found to regulate expression of the genes related to ergosterol biosynthesis, including cyp51A that encodes a target protein of azoles. The atrR deletion mutant showed impaired growth under hypoxic conditions and attenuation of virulence in murine infection model for aspergillosis. These results were similar to the phenotypes for a mutant strain lacking SrbA that is also a direct regulator for the cyp51A gene. Notably, AtrR was responsible for the expression of cdr1B that encodes an ABC transporter related to azole resistance, whereas SrbA was not involved in the regulation. Chromatin immunoprecipitation assays indicated that AtrR directly bound both the cyp51A and cdr1B promoters. In the clinically isolated itraconazole resistant strain that harbors a mutant Cyp51A (G54E), deletion of the atrR gene resulted in a hypersensitivity to the azole drugs. Together, our results revealed that AtrR plays a pivotal role in a novel azole resistance mechanism by co-regulating the drug target (Cyp51A) and putative drug efflux pump (Cdr1B). PMID:28052140

  9. A Novel Zn2-Cys6 Transcription Factor AtrR Plays a Key Role in an Azole Resistance Mechanism of Aspergillus fumigatus by Co-regulating cyp51A and cdr1B Expressions.

    Directory of Open Access Journals (Sweden)

    Daisuke Hagiwara

    2017-01-01

    Full Text Available Successful treatment of aspergillosis caused by Aspergillus fumigatus is threatened by an increasing incidence of drug resistance. This situation is further complicated by the finding that strains resistant to azoles, the major antifungal drugs for aspergillosis, have been widely disseminated across the globe. To elucidate mechanisms underlying azole resistance, we identified a novel transcription factor that is required for normal azole resistance in Aspergillus fungi including A. fumigatus, Aspergillus oryzae, and Aspergillus nidulans. This fungal-specific Zn2-Cys6 type transcription factor AtrR was found to regulate expression of the genes related to ergosterol biosynthesis, including cyp51A that encodes a target protein of azoles. The atrR deletion mutant showed impaired growth under hypoxic conditions and attenuation of virulence in murine infection model for aspergillosis. These results were similar to the phenotypes for a mutant strain lacking SrbA that is also a direct regulator for the cyp51A gene. Notably, AtrR was responsible for the expression of cdr1B that encodes an ABC transporter related to azole resistance, whereas SrbA was not involved in the regulation. Chromatin immunoprecipitation assays indicated that AtrR directly bound both the cyp51A and cdr1B promoters. In the clinically isolated itraconazole resistant strain that harbors a mutant Cyp51A (G54E, deletion of the atrR gene resulted in a hypersensitivity to the azole drugs. Together, our results revealed that AtrR plays a pivotal role in a novel azole resistance mechanism by co-regulating the drug target (Cyp51A and putative drug efflux pump (Cdr1B.

  10. ATR-FTIR sensor development for continuous on-line monitoring of chlorinated aliphatic hydrocarbons in a fixed-bed bioreactor.

    Science.gov (United States)

    Acha, V; Meurens, M; Naveau, H; Agathos, S N

    2000-06-05

    This article describes the continuous on-line monitoring of a dechlorination process by a novel attenuated total reflection-Fourier transform infrared (ATR-FTIR) sensor. This optical sensor was developed to measure noninvasively part-per-million (ppm) concentrations of trichloroethylene (TCE), tetrachloroethylene (PCE), and carbon tetrachloride (CT) in the aqueous effluent of a fixed-bed dechlorinating bioreactor, without any prior sample preparation. The sensor was based on an ATR internal reflection element (IRE) coated with an extracting hydrophobic polymer, which prevented water molecules from interacting with the infrared (IR) radiation. The selective diffusion of chlorinated compound molecules from aqueous solution into the polymer made possible their detection by the IR beam. With the exclusion of water the detection limits were lowered, and measurements in the low ppm level became possible. The best extracting polymer was polyisobutylene (PIB) in the form of a 5.8-microm thick film, which afforded a detection limit of 2, 3, and 2. 5 mg/L (ppm) for TCE, PCE, and CT, respectively. Values of the enrichment factors between the polymer coating and the water matrix of these chloro-organics were determined experimentally and were compared individually with predictions obtained from the slopes of absorbance/concentration curves for the three analytes. Before coupling the ATR-FTIR sensor to the dechlorinating bioreactor, preliminary spectra of the chlorinated compounds were acquired on a laboratory scale configuration in stop-flow and flow-through closed-loop modes. In this way, it was possible to study the behavior and direct response of the optical sensor to any arbitrary concentration change of the analytes. Subsequently, the bioreactor was monitored with the infrared sensor coupled permanently to it. The sensor tracked the progression of the analytes' spectra over time without perturbing the dechlorinating process. To calibrate the ATR-FTIR sensor, a total of 13

  11. Efectividad de un programa de ejercicios y pedaleo hacia atrás en atletas afectados de Síndrome de Dolor Femoropatelar en el Centro de alto rendimiento de Madrid.

    OpenAIRE

    Gracia Pera, María Bruis

    2014-01-01

    ¿Los atletas tratados con Síndrome de dolor femoropatelar que reciban un plan de prevención mediante el pedaleo hacia atrás disminuirán la recurrencia? El objetivo de dicho estudio es la reducción de la recurrencia en los atletas diagnosticados de Síndrome de dolor femoropatelar (PFPS) mediante la incorporación del pedaleo hacia atrás en el plan de prevención. Metodología: estudio experimental, controlado, aleatorio y simple ciego. Se elegirá una muestra de 20 pacientes diagnosticados d...

  12. POLA SEBARAN SEDIMEN DASAR BERDASARKAN KARAKTERISTIK MORFOLOGI DAN HIDRO-OSEANOGRAFI MENGGUNAKAN MODEL INTERPOLASI DAN SIMULASI NUMERIK DI PERAIRAN UTARA PULAU SIMEULUECUT

    Directory of Open Access Journals (Sweden)

    Ulung Jantama Wisha

    2017-05-01

    Full Text Available Pulau Simeulue Cut merupakan kawasan Konservasi yang nantinya akan diarahkan untuk Daerah Perlindungan Laut (DPL dan Taman Wisata Bahari (TWB, sehingga diperlukan Managemen Plan Kawasan Konservasi Laut Daerah. Tujuan dari penelitian ini adalah untuk mengetahui sebaran sedimen cross-shore di pesisir Pulau Simeulue cut berdasarkan kajian batimetri dan arus pasang surut. Metode penelitian yang digunakan adalah metode studi kasus untuk mengetahui kedalaman, pola sebaran sedimen permukaan dasar laut dan kondisi oseanografi fisika di perairan Simeuluecut secara kualitatif. Hasil pemeruman dianalisis secara spasial dengan menggunakan software Surfer 10 dan ArcGIS 10, Pengukuran arus dan pasang surut dengan menggunakan alat ADCP dan simulasi numerik hidrodinamika dengan menggunakan software MIKE 21 dan pengolahan data pasang surut dengan metode admiralty. Kedalaman perairan berkisar antara 0 - 26 meter dan kelerengan berkisar antara 10% - 15%, sedimen permukaan dasar diperoleh tiga satuan sedimen yaitu pasir kasar, satuan pasir sedang dan satuan pasir halus lanauan (silty sand, verifikasi hasil permodelan didapatkan RMSE sebesar 11,7 %. Kecepatan arus berkisar antara 0 - 0,02 m.s-1pada saat surut menuju pasang dan berkisar antara 0-0,006 m.s-1 pada saat pasang menuju surut, untuk kecepatan arus longshore berkisar antara 0,006 - 0,027 m.s-1 pada kondisi surut menuju pasang dan berkisar antara 0,001 - 0,006 m.s-1 pada kondisi pasang menuju surut, hasil pasang surut didapatkan nilai MSL sebesar 12,53 meter dan tidal range sebesar 2,2 meter, Kondisi oseanografi mempengaruhi distribusi sedimen cross-shore di bibir pantai dan secara langsung mempengaruhi kondisi batimetri di perairan Simeuluecut.Kata Kunci: Batimetri, hidrodinamika, sedimen, Simeuluecut, spatial analisis DISTRIBUTION PATTERNS OF BOTTOM SEDIMENT BASED FROM MORPHOLOGICAL AND HYDRO-OCEANOGRAPHY CHARACTERISTICS USING INTERPOLATION AND NUMERICAL SIMULATION MODEL IN SIMEULUECUT ISLAND NORTHERN

  13. Interaction of Zn(II) with hematite nanoparticles and microparticles: Part 2. ATR-FTIR and EXAFS study of the aqueous Zn(II)/oxalate/hematite ternary system.

    Science.gov (United States)

    Ha, Juyoung; Trainor, Thomas P; Farges, François; Brown, Gordon E

    2009-05-19

    Sorption of Zn(II) to hematite nanoparticles (HN) (av diam=10.5 nm) and microparticles (HM) (av diam=550 nm) was studied in the presence of oxalate anions (Ox2-(aq)) in aqueous solutions as a function of total Zn(II)(aq) to total Ox2-(aq) concentration ratio (R=[Zn(II)(aq)]tot/[Ox2-(aq)]tot) at pH 5.5. Zn(II) uptake is similar in extent for both the Zn(II)/Ox/HN and Zn(II)/Ox/HM ternary systems and the Zn(II)/HN binary system at [Zn(II)(aq)](tot)system than for the Zn(II)/Ox/HM ternary and the Zn(II)/HN and Zn(II)/HM binary systems at [Zn(II)(aq)]tot>4 mM. In contrast, Zn(II) uptake for the Zn(II)/HM binary system is a factor of 2 greater than that for the Zn(II)/Ox/HM and Zn(II)/Ox/HN ternary systems and the Zn(II)/HN binary system at [Zn(II)(aq)]totternary system at both R values examined (0.16 and 0.68), attenuated total reflectance Fourier transform infrared (ATR-FTIR) results are consistent with the presence of inner-sphere oxalate complexes and outer-sphere ZnOx(aq) complexes, and/or type A ternary complexes. In addition, extended X-ray absorption fine structure (EXAFS) spectroscopic results suggest that type A ternary surface complexes (i.e., >O2-Zn-Ox) are present. In the Zn(II)/Ox/HN ternary system at R=0.15, ATR-FTIR results indicate the presence of inner-sphere oxalate and outer-sphere ZnOx(aq) complexes; the EXAFS results provide no evidence for inner-sphere Zn(II) complexes or type A ternary complexes. In contrast, ATR-FTIR results for the Zn/Ox/HN sample with R = 0.68 are consistent with a ZnOx(s)-like surface precipitate and possibly type B ternary surface complexes (i.e., >O2-Ox-Zn). EXAFS results are also consistent with the presence of ZnOx(s)-like precipitates. We ascribe the observed increase of Zn(II)(aq) uptake in the Zn(II)/Ox/HN ternary system at [Zn(II)(aq)]tot>or=4 mM relative to the Zn(II)/Ox/HM ternary system to formation of a ZnOx(s)-like precipitate at the hematite nanoparticle/water interface.

  14. Tratamiento del maxilar posterior atrófico mediante técnica de reconstrucción tridimensional con elevación de seno y abordaje «en tunel»

    Directory of Open Access Journals (Sweden)

    Andrés Restoy

    2015-01-01

    Conclusiones: El tratamiento del sector posterior maxilar atrófico mediante reconstrucción tridimensional con autoinjerto óseo, elevación sinusal y abordaje por tunelización es una técnica que proporciona resultados predecibles y estables, permitiendo la rehabilitación con coronas sobre implantes dentales de dimensiones adecuadas.

  15. Effect of pH on the Nitrite Hydrogenation Mechanism over Pd/Al(2)O(3) and Pt/Al(2)O(3): Details obtained with ATR-IR Spectroscopy

    NARCIS (Netherlands)

    Ebbesen, S.D.; Mojet, Barbara; Lefferts, Leonardus

    2011-01-01

    It is well-known that activity and selectivity to N2 during nitrite hydrogenation over noble metal catalysts in water depend on the pH of the solution, but mechanistic understanding is lacking. Attenuated total reflection infrared (ATR-IR) spectroscopy is an ideal tool to perform detailed studies on

  16. Manejo estomatológico del liquen plano oral atrófico. Revisión de literatura y presentación de un caso

    OpenAIRE

    Harris Ricardo, Jonathan; Corporación Universitaria Rafael Núñez, Cartagena, Colombia; Díaz-Caballero, Antonio; Universidad de Cartagena, Cartagena, Colombia; Fortich Mesa, Natalia; Corporación Universitaria Rafael Núñez, Cartagena, Colombia

    2011-01-01

    El liquen plano oral es una enfermedad de carácter autoinmune mucocutánea crónica y etiología desconocida. Las lesiones se presentan en la cavidad oral, la piel, las uñas y también pueden tener expresiones en los folículos pilosos de la cabeza. Presenta diversas formas clínicas entre las que se encuentra el patrón reticular, atrófico y erosivo. Este último es la forma clínica más asociada con una transformación maligna de las lesiones bucales. El diagnóstico es clínico-patológico y el tratami...

  17. Study of Barley Grain Molecular Structure for Ruminants Using DRIFT, FTIR-ATR and Synchrotron Radiation Infrared Microspectroscopy (SR-IMS): A Review

    Science.gov (United States)

    Yu, Peiqiang

    2012-05-01

    Barley inherent structures are highly associated with nutrient utilization and availability in both humans and animals. Barley has different degradation kinetics compared with other cereal grains. It has a relatively higher degradation rate and extent, which often cause digestive disorder in the rumen. Therefore understanding barley inherent structure at cellular and molecular levels and processing-induced structure changes is important, because we can manipulate barley inherent structures and digestive behaviors. Several molecular spectroscopy techniques can be used to detect barley inherent structures at cellular and molecular levels. This article reviews several applications of the IR molecular spectral bioanalytical techniques - DRIFT, FT/IR-ATR and SR-IMS for barley chemistry, molecular structure and molecular nutrition research

  18. Evaluation of Corrosion of the Dummy “EE” Plate 19 in YA Type ATR Fuel Element During Reactor PALM Cycles

    Energy Technology Data Exchange (ETDEWEB)

    Brower, Jeffrey Owen [Idaho National Lab. (INL), Idaho Falls, ID (United States); Glazoff, Michael Vasily [Idaho National Lab. (INL), Idaho Falls, ID (United States); Eiden, Thomas John [Idaho National Lab. (INL), Idaho Falls, ID (United States); Rezvoi, Aleksey Victor [Idaho National Lab. (INL), Idaho Falls, ID (United States)

    2016-08-01

    Advanced Test Reactor (ATR) Cycle 153B-1 was a 14-day, high-power, powered axial locator mechanism (PALM) operating cycle that completed on April 12, 2013. Cycle 153B-1 was a typical operating cycle for the ATR and did not result in any unusual plant transients. ATR was started up and shut down as scheduled. The PALM drive physically moves the selected experiments into and out of the core to simulate reactor startup and heat up, and shutdown and cooldown transients, while the reactor remains in steady state conditions. However, after the cycle was over, several thousand of the flow-assisted corrosion pits and “horseshoeing” defects were readily observable on the surface of the several YA-type fuel elements (these are “dummy” plates that contain no fuel). In order understand these corrosion phenomena a thermal-hydraulic model of coolant channel 20 on a YA-M fuel element was generated. The boundaries of the model were the aluminum EE plate of a YA-M fuel element and a beryllium reflector block with 13 horizontal saw cuts which represented regions of zero flow. The heat generated in fuel plates 1 through 18 was modeled to be passing through the aluminum EE plate. The coolant channel 20 width was set at 0.058 in. (58 mils). It was established that the horizontal saw cuts had a significant effect on the temperature of the coolant. The flow, which was expected to vary linearly with gradual heating of the coolant as it passed through the channel, was extremely turbulent. The temperature rise, which was expected to be a smooth “S” curve, was represented by a series temperature rise “humps,” which occurred at each horizontal saw cut in the beryllium reflector block. Each of the 13 saw cuts had a chamfered edge which resulted in the coolant flow being re-directed as a jet across the coolant channel into the surface of the EE plate, which explained the temperature rise and the observed sscalloping and possibly pitting degradation on the YA-M fuel elements. In

  19. Fourier transform infrared-attenuated total reflectance (FTIR-ATR spectroscopy and chemometric techniques for the determination of adulteration in petrodiesel/biodiesel blends

    Directory of Open Access Journals (Sweden)

    Armando Guerrero Peña

    2014-06-01

    Full Text Available We propose an analytical method based on fourier transform infrared-attenuated total reflectance (FTIR-ATR spectroscopy to detect the adulteration of petrodiesel and petrodiesel/palm biodiesel blends with African crude palm oil. The infrared spectral fingerprints from the sample analysis were used to perform principal components analysis (PCA and to construct a prediction model using partial least squares (PLS regression. The PCA results separated the samples into three groups, allowing identification of those subjected to adulteration with palm oil. The obtained model shows a good predictive capacity for determining the concentration of palm oil in petrodiesel/biodiesel blends. Advantages of the proposed method include cost-effectiveness and speed; it is also environmentally friendly.

  20. 2DCOS and PCMW2D analysis of FT-IR/ATR spectra measured at variable temperatures on-line to a polyurethane polymerization

    Science.gov (United States)

    Schuchardt, Patrick; Unger, Miriam; Siesler, Heinz W.

    2018-01-01

    In the present communication the potential of 2DCOS analysis and the spin-off technique perturbation-correlation moving window 2D (PCMW2D) analysis is illustrated with reference to spectroscopic changes observed in a data set recorded by in-line fiber-coupled FT-IR spectroscopy in the attenuated total reflection (ATR) mode during a polyurethane solution polymerization at different temperatures. In view of the chemical functionalities involved, hydrogen bonding plays an important role in this polymerization reaction. Based on the 2DCOS and PCMW2D analysis, the sequence of hydrogen bonding changes accompanying the progress of polymerization and precipitation of solid polymer can be determined. Complementary to the kinetic data derived from the original variable-temperature spectra in a previous publication the results provide a more detailed picture of the investigated solution polymerization.

  1. MRN- and 9-1-1-Independent Activation of the ATR-Chk1 Pathway during the Induction of the Virulence Program in the Phytopathogen Ustilago maydis.

    Directory of Open Access Journals (Sweden)

    María Tenorio-Gómez

    Full Text Available DNA damage response (DDR leads to DNA repair, and depending on the extent of the damage, to further events, including cell death. Evidence suggests that cell differentiation may also be a consequence of the DDR. During the formation of the infective hypha in the phytopathogenic fungus Ustilago maydis, two DDR kinases, Atr1 and Chk1, are required to induce a G2 cell cycle arrest, which in turn is essential to display the virulence program. However, the triggering factor of DDR in this process has remained elusive. In this report we provide data suggesting that no DNA damage is associated with the activation of the DDR during the formation of the infective filament in U. maydis. We have analyzed bulk DNA replication during the formation of the infective filament, and we found no signs of impaired DNA replication. Furthermore, using RPA-GFP fusion as a surrogate marker of the presence of DNA damage, we were unable to detect any sign of DNA damage at the cellular level. In addition, neither MRN nor 9-1-1 complexes, both instrumental to transmit the DNA damage signal, are required for the induction of the above mentioned cell cycle arrest, as well as for virulence. In contrast, we have found that the claspin-like protein Mrc1, which in other systems serves as scaffold for Atr1 and Chk1, was required for both processes. We discuss possible alternative ways to trigger the DDR, independent of DNA damage, in U. maydis during virulence program activation.

  2. Técnicas FT-IR (PAS, UATR e Objetiva ATR Aplicadas à Caracterização de EPDM Modificada com Plasma

    Directory of Open Access Journals (Sweden)

    Renata Patrícia dos Santos

    2014-06-01

    Full Text Available Técnicas FT-IR (UATR, PAS e MIC, com objetiva ATR foram escolhidas para a caracterização da superfície da borracha de EPDM vulcanizada, após tratamento em plasma de Ar/O2 e N2/H2/Ar gerado em micro-ondas. Após tratamento, grupos oxigenados foram detectados por UATR e MIC/FT-IR, com objetiva ATR para as duas misturas gasosas, e possíveis grupos nitrogenados foram inseridos na superfície das amostras tratadas com plasma de N2/H2/Ar. A análise MIC/FT-IR sugeriu a formação de grupos em uma camada mais externa, para as amostras tratadas com plasma de N2/H2/Ar, sendo possível observar a redução na intensidade das bandas da absorção do CH2 e CH3, o que pode estar relacionado ao fato de o nitrogênio ser um gás menos permeável que o oxigênio. Diferentes velocidades, 0,05 cm.s-1 e 0,2 cm.s-1, foram utilizadas na análise PAS para avaliar a superfície após tratamento, e apenas para a velocidade 0,05 cm.s-1 com plasma de Ar/O2 alterações espectroscópicas foram detectadas. A redução na medida de ângulo de contato e o aumento na resistência ao descascamento da colagem indicaram melhoras nas propriedades adesivas da superfície. Falhas de adesão foram observadas entre a interface do filme de adesivo de PU e da borracha de EPDM, e confirmados por UATR/FT-IR.

  3. Degradation patterns of natural and synthetic textiles on a soil surface during summer and winter seasons studied using ATR-FTIR spectroscopy

    Science.gov (United States)

    Ueland, Maiken; Howes, Johanna M.; Forbes, Shari L.; Stuart, Barbara H.

    2017-10-01

    Textiles are a valuable source of forensic evidence and the nature and condition of textiles collected from a crime scene can assist investigators in determining the nature of the death and aid in the identification of the victim. Until now, much of the knowledge of textile degradation in forensic contexts has been based on the visual inspection of material collected from soil environments. The purpose of the current study was to investigate the potential of a more quantitative approach to the understanding of forensic textile degradation through the application of infrared spectroscopy. Degradation patterns of natural and synthetic textile materials as they were subjected to a natural outdoor environment in Australia were investigated. Cotton, polyester and polyester - cotton blend textiles were placed on a soil surface during the summer and winter seasons and were analysed over periods 1 and 1.5 years, respectively, and examined using attenuated total reflectance (ATR) spectroscopy. Statistical analysis of the spectral data obtained for the cotton material correlated with visual degradation and a difference in the onset of degradation between the summer and winter season was revealed. The synthetic material did not show any signs of degradation either visually or statistically throughout the experimental period and highlighted the importance of material type in terms of preservation. The cotton section from the polyester - cotton blend samples was found to behave in a similar manner to that of the 100% cotton samples, however principal component analysis (PCA) demonstrated that the degradation patterns were less distinct in both the summer and winter trial for the blend samples. These findings indicated that the presence of the synthetic material may have inhibited the degradation of the natural material. The use of statistics to analyse the spectral data obtained for textiles of forensic interest provides a better foundation for the interpretation of the data

  4. Formación de investigadores en medicina familiar: El modelo de tutorización en investigación Asesor-Tutor-Residente (ATR

    Directory of Open Access Journals (Sweden)

    E. Raúl Ponce Rosas

    Full Text Available El tutor de la medicina de familia, los principios y características de la tutoría y la relación tutor-residente son elementos fundamentales para el desarrollo adecuado de los cursos de especialización de esta disciplina. La tutoría o tutorización en medicina familiar es la base de la docencia y se centra en la figura de una relación humana de enseñanza individualizada tutor-residente en la práctica asistencial, docente y de investigación. Los modelos de tutorización en medicina de familia proporcionan herramientas útiles para establecer una adecuada relación tutor-residente. En este trabajo se describe el modelo de tutorización en investigación Asesor-Tutor-Residente, que se lleva a cabo en el Curso de Especialización de Medicina Familiar en la Facultad de Medicina de la UNAM, México. El modelo de tutorización en investigación Asesor-Tutor-Residente (ATR, es un paradigma de capacitación teórico-práctico en esta importante y fundamental área de la medicina de familia. El modelo ATR pretende motivar e interesar a tutores y residentes para hacer investigación con base en la demostración y la supervisión formativa a través de la asesoría continua, reflexiva, planeada y sistematizada.

  5. In situ observation on the dynamic process of evaporation and crystallization of sodium nitrate droplets on a ZnSe substrate by FTIR-ATR.

    Science.gov (United States)

    Zhang, Qing-Nuan; Zhang, Yun; Cai, Chen; Guo, Yu-Cong; Reid, Jonathan P; Zhang, Yun-Hong

    2014-04-17

    Sodium nitrate is a main component of aging sea salt aerosol, and its phase behavior has been studied repeatedly with wide ranges observed in the efflorescence relative humidity (RH) in particular. Studies of the efflorescence dynamics of NaNO3 droplets deposited on a ZnSe substrate are reported, using an in situ Fourier transform infrared attenuated total reflection (FTIR-ATR) technique. The time-dependence of the infrared spectra of NaNO3 aerosols accompanying step changes in RH have been measured with high signal-to-noise ratio. From the IR difference spectra recorded, changes of the time-dependent absorption peak area of the O-H stretching band (ν-OH, ∼3400 cm(-1)) and the nitrate out-of-plane bending band (ν2-NO3(-), ∼836 cm(-1)) are obtained. From these measurements, changes in the IR signatures can be attributed to crystalline and solution phase nitrate ions, allowing the volume fraction of the solution droplets that have crystallized to be determined. Then, using these clear signatures of the volume fraction of droplets that have yet to crystallize, the homogeneous and heterogeneous nucleation kinetics can be studied from conventional measurements using a steady decline in RH. The nucleation rate measurements confirm that the rate of crystallization in sodium nitrate droplets is considerably less than in ammonium sulfate droplets at any particular degree of solute supersaturation, explaining the wide range of efflorescence RHs observed for sodium nitrate in previous studies. We demonstrate that studying nucleation kinetics using the FTIR-ATR approach has many advantages over brightfield imaging studies on smaller numbers of larger droplets or measurements made on single levitated particles.

  6. Evaluation of Erosion of the Dummy “EE” Plate 19 in YA Type ATR Fuel Element During Reactor PALM Cycles

    Energy Technology Data Exchange (ETDEWEB)

    Brower, Jeffrey O. [Idaho National Lab. (INL), Idaho Falls, ID (United States). Advanced Test Reactor; Glazoff, Michael V. [Idaho National Lab. (INL), Idaho Falls, ID (United States). Advanced Test Reactor; Eiden, Thomas J. [Idaho National Lab. (INL), Idaho Falls, ID (United States). Advanced Test Reactor; Rezvoi, Aleksey V. [Idaho National Lab. (INL), Idaho Falls, ID (United States). Advanced Test Reactor

    2016-08-01

    Advanced Test Reactor (ATR) Cycle 153B-1 was a 14-day, high-power, powered axial locator mechanism (PALM) operating cycle that completed on April 12, 2013. Cycle 153B-1 was a typical operating cycle for the ATR, and did not result in any unusual plant transients. ATR was started up and shut down as scheduled. The PALM drive physically moves the selected experiments into and out of the core to simulate reactor startup and heat up, and shutdown and cooldown transients, while the reactor remains in steady-state conditions. However, after the cycle was over, when the fuel elements were removed from the core and inspected, several thousand flow-assisted erosion pits and “horseshoeing” defects were readily observed on the surface of the several YA-type fuel elements (these are aluminum “dummy” plates that contain no fuel). In order to understand these erosion phenomena, a thermal-hydraulic model of coolant channel 20 on a YA-M fuel element was generated. The boundaries of the model were the aluminum EE plate of a YA-M fuel element and a beryllium reflector block with 13 horizontal saw cuts which represented regions of zero flow. The heat generated in fuel plates 1 through 18 was modeled to be passing through the aluminum EE plate. The coolant channel 20 width was set at 0.058 in. (58 mils). It was established that the horizontal saw cuts had a significant effect on the temperature of the coolant. The flow, which was expected to vary linearly with gradual heating of the coolant as it passed through the channel, was extremely turbulent. The temperature rise, which was expected to be a smooth “S” curve, was represented by a series temperature rise “humps,” which occurred at each horizontal saw cut in the beryllium reflector block. Each of the 13 saw cuts had a chamfered edge which resulted in the coolant flow being re-directed as a jet across the coolant channel into the surface of the EE plate, which explained the temperature rise and the observed

  7. FTIR-ATR-based prediction and modelling of lignin and energy contents reveals independent intra-specific variation of these traits in bioenergy poplars

    Directory of Open Access Journals (Sweden)

    Taylor Gail

    2011-04-01

    Full Text Available Abstract Background There is an increasing demand for renewable resources to replace fossil fuels. However, different applications such as the production of secondary biofuels or combustion for energy production require different wood properties. Therefore, high-throughput methods are needed for rapid screening of wood in large scale samples, e.g., to evaluate the outcome of tree breeding or genetic engineering. In this study, we investigated the intra-specific variability of lignin and energy contents in extractive-free wood of hybrid poplar progenies (Populus trichocarpa × deltoides and tested if the range was sufficient for the development of quantitative prediction models based on Fourier transform infrared spectroscopy (FTIR. Since lignin is a major energy-bearing compound, we expected that the energy content of wood would be positively correlated with the lignin content. Results Lignin contents of extractive-free poplar wood samples determined by the acetyl bromide method ranged from 23.4% to 32.1%, and the calorific values measured with a combustion calorimeter varied from 17260 to 19767 J g-1. For the development of calibration models partial least square regression and cross validation was applied to correlate FTIR spectra determined with an attenuated total reflectance (ATR unit to measured values of lignin or energy contents. The best models with high coefficients of determination (R2 (calibration = 0.91 and 0.90; R2 (cross-validation = 0.81 and 0.79 and low root mean square errors of cross validation (RMSECV = 0.77% and 62 J g-1 for lignin and energy determination, respectively, were obtained after data pre-processing and automatic wavenumber restriction. The calibration models were validated by analyses of independent sets of wood samples yielding R2 = 0.88 and 0.86 for lignin and energy contents, respectively. Conclusions These results show that FTIR-ATR spectroscopy is suitable as a high-throughput method for lignin and energy

  8. ANALISIS KUALITAS LINGKUNGAN PERAIRAN BERDASARKAN KOMUNITAS MEIOBENTOS DAN KUALITAS SEDIMEN DI PANTAI DAN AREA PERTAMBAKAN, PESISIR SRIWULAN KABUPATEN DEMAK (The Quality Analysis of Aquatic Environment based on Meiobentos Community and Sediment Quality

    Directory of Open Access Journals (Sweden)

    Muhandis Sidqi

    2015-01-01

    Full Text Available ABSTRAK  Tujuan studi ini meliputi (1 menentukan kualitas lingkungan daerah pesisir dan tambak ikan, kualitas sedimen, dan komunitas meiobentos, (2 menemukan hubungan antara kualitas sedimen dan meiobentos, dan (3 menentukan tingkat produktivitas peikampungan tambak ikan berdasarkan jarak, tingkat polusi dan destruksi. Parameter kualitas air dianalisis menggunakan metode deskriptif-komparatif, sedangkan parameter sedimen dianalisis menggunakan PCA (Principal Component Analisys untuk menentukan distribusi spasial pada setiap stasiun pemantauan dan lapisan kedalaman sedimen. Komunitas meiobentos diperiksa dengan menggunakan CA (Factorial Correspondence Analysis untuk mendeteksi tingkat distribusi spasial yang juga berdasarkan stasiun pemantauan dan lapisan kedalaman sedimen. Data tersebut dianalisis menggunakan korelasi dan regresi untuk memahami pengaruh parameter bebas terhadap produktivitas tambak ikan. Kemudian tes statistik non parametric dari Kruskall Wallis digunakan untuk membedakan produktivitas pada 3 desa berdasarkan jarak terhadap sumber pencemaran dan tingkat destruksi tambak ikan. Penelitian ini menemukan bahwa nilai parameter kualitas air (muddy, TSS NH3, NO2, beyond threshold level, negative redox potential (Eh sediment value/reduction zone, and IMLP adalah moderat. Hal ini menunjukkan bahwa kondisi air di daerah penelitian tidak stabil. Penelitian juga menunjukkan nilai indeks diversitas yang rendah, dominasi organisme meiobentos tertentu, dan konformitas antar komunitas bentos. Hasil tes statistik Kruskall Wallis menunjukkan adanya signifikansi antara produktivitas tambak ikan dengan factor jarak dan tingkat destruksi diantara 3 desa dalam daerah penelitian yaitu Bedono, Sriwulan. Purwosari yaitu dengan nilai produktivitas 0.65,0.56, 0.41 ton/hektar/tahun.   ABSTRACT The objective of this study area to determine the environmental quality of coastal area and fish ponds which are on water quality, sediment quality, and Meiobentos

  9. Study of the interface solid/solutions containing PEO-PPO block copolymers and asphaltenes by FTIR/ATR; Estudo de solucoes de copolimeros em bloco de PEO-PPO contendo asfaltenos por FTIR/DTA

    Energy Technology Data Exchange (ETDEWEB)

    Aguiar, Janaina I.S.; Neto, Jessica S.G.; Mansur, Claudia R.E. [Universidade Federal do Rio de Janeiro, Instituto de Macromoleculas, Laboratorio de Macromoleculas e Coloides na Industria de Petroleo, Rio de Janeiro, RJ (Brazil)], E-mails: janaina_333@hotmail.com, kinha_dac_dm@hotmail.com; celias@ima.ufrj.br

    2011-07-01

    The formation of water/oil emulsions can cause problems in various stages of production, processing and refining of petroleum. In this study, the technique of Fourier transform infrared spectroscopy (FTIR) using the method of attenuated total reflectance (ATR) was applied to study the solid-solutions of block copolymers based on poly(ethylene oxide)-poly(propylene oxide) (PEO-PPO) interface and its interaction in this interface with asphaltenic fractions of petroleum. The solid is the crystal of the ATR. Initially, we determined the critical micelle concentration values of the copolymers, which were consistent those obtained by a tensiometer. Bottle Test was also performed to correlate the efficiency of PEO-PPO copolymers in the breaking of water/oil emulsions with its adsorption at the interfaces solutions. (author)

  10. PENENTUAN KRITERIA MUTU BIJI PALA (Myristica fragrans Houtt BERDASARKAN ANALISIS TEKSTUR MENGGUNAKAN TEKNOLOGI PENGOLAHAN CITRA DIGITAL (Quality Criteria for Determination of Seeds Nutmeg (Myristica fragrans Houtt Based Texture Analysis Using Digital

    Directory of Open Access Journals (Sweden)

    Latifa Dinar

    2013-06-01

    Full Text Available Separation of nutmeg based on quality at the farm level is still not done. At the market level process to separate the whole seed and seed damage done by direct observation. The process has the disadvantage, among others, can not be done continuously and mixed results. Development of non-destructive method for separate nutmeg by class quality effectively and objectively indispensable. On image texture analysis can be used to differentiate the surface properties of an object in the image associated with the rough and smooth, also the specific properties of the surface roughness and smoothness criteria that characterize an object of an object. This study aims to analyze the texture characteristics of the object image nutmeg with image processing to determine the quality grade of nutmeg. The materials used are nutmeg derived from Ternate town of North Maluku with reference to defined quality standards in 2000 that divides Menegristek nutmeg into three quality classes ABCD, Rimpel and BWP. Determination of the quality criteria nutmeg done by the method of discriminant analysis. Texture characteristics extracted from the object image consisting of nutmeg contrast, correlation, energy, homogenity, entropy. The results showed significant parameter correlation and the entropy distinguish quality classes nutmeg with a degree of truth of 96,7%. Keywords: Nutmeg, quality, classification, texture, discriminant analysis   ABSTRAK Pemisahan biji pala berdasarkan mutu di tingkat petani saat ini masih belum dilakukan. Di tingkat pedagang proses untuk memisahkan antara biji utuh dan biji rusak dilakukan dengan pengamatan langsung. Proses tersebut memiliki kelemahan antara lain tidak dapat dilakukan secara terus menerus dan hasil yang beragam. Pengembangan metode non-destruktif untuk memisahkanan biji pala berdasarkan kelas mutunya secara efektif dan objektif sangat diperlukan. Analisis  tekstur pada citra dapat digunakan untuk membedakan sifat-sifat permukaan

  11. Effect of pH on the Nitrite Hydrogenation Mechanism over Pd/Al2O3 and Pt/Al2O3: Details Obtained with ATR-IR Spectroscopy

    DEFF Research Database (Denmark)

    Ebbesen, Sune Dalgaard; Mojet, Barbara L.; Lefferts, Leon

    2011-01-01

    on catalytic surfaces in water. In this paper, the influence of pH was studied on adsorption and subsequent hydrogenation of nitrite in water between pH 5 and 9 over Pd/Al2O3 and Pt/Al2O3, using ATR-IR spectroscopy. On both catalysts, pH clearly influenced the surface coverage and reaction rates...

  12. Characterization of Developmental Immature Fiber ( im) Mutant and Texas Marker-1 (TM-1) Cotton Fibers Using Attenuated Total Reflection Fourier Transform Infrared (ATR FT-IR) Spectroscopy.

    Science.gov (United States)

    Liu, Yongliang; Kim, Hee-Jin

    2017-07-01

    The immature fiber ( im) mutant is one type of cotton fiber mutant with unique characteristics of non-fluffy cotton bolls. Compared to its near-isogenic wild type Texas Marker-1 (TM-1), im fiber has a thin secondary cell wall and is less mature. In this work, we applied the previously proposed principal component analysis (PCA) and simple algorithms to analyze the attenuated total reflection Fourier transform infrared (ATR FT-IR) spectra of developmental im and TM-1 fibers. The results from these approaches could not effectively and consistently indicate the inherent difference between TM-1 and im fibers at the same developmental stage. The difference between TM-1 and corresponding im fibers was detected when comparing the normalized intensity variations of the 730 cm-1 bands. The 730 cm-1 band intensities in developmental im fibers are temporally lower than those in developmental TM-1 fibers although they became similar when the TM-1 and im fibers are fully mature. The observation might imply the likelihood of temporal reduction of amorphous regions in developmental im fibers rather than in developmental TM-1 fibers.

  13. Attenuated Total Reflection Fourier Transform Infrared Spectroscopy (ATR FT-IR) Applied to Study the Distribution of Ink Components in Printed Newspapers.

    Science.gov (United States)

    Gómez, Nuria; Molleda, Cristina; Quintana, Ester; Carbajo, José M; Rodríguez, Alejandro; Villar, Juan C

    2016-09-01

    A new method was developed to study how the oil and cyan pigments of cold-set ink are distributed in newspaper thickness. The methodology involved laboratory printing followed by delamination of the printed paper. The unprinted side, printed side, and resulting layers were analyzed using attenuated total reflection Fourier transform infrared spectroscopy (ATR FT-IR). Three commercial newspapers and black and cyan cold-set inks were chosen for the study. Attenuated total reflection Fourier transform infrared spectroscopy enabled the proportion of oil and cyan pigment on the printed surface and throughout the sheet thickness to be measured. Oil percentage was evaluated as the area increment of the region from 2800 cm(-1) to 3000 cm(-1) The relative amount of cyan pigment was determined as the area of the absorption band at 730 cm(-1) The ink oil was found mainly below half the paper thickness, whereas the pigment was detected at the layers closer to the printed surface, at a depth penetration of less than 15 µm (20% of thickness). Distribution of these two components in paper thickness depended on the type of cold-set ink, the amount of ink transferred, and the newspaper properties. © The Author(s) 2016.

  14. ATM/ATR-related checkpoint signals mediate arsenite-induced G{sub 2}/M arrest in primary aortic endothelial cells

    Energy Technology Data Exchange (ETDEWEB)

    Tsou, Tsui-Chun; Tsai, Feng-Yuan; Yeh, Szu-Ching; Chang, Louis W. [National Health Research Institutes, Division of Environmental Health and Occupational Medicine, Miaoli County (Taiwan)

    2006-12-15

    Epidemiological studies have demonstrated a high association of inorganic arsenic exposure with vascular disease. Our recent in vitro studies have linked this vascular damage to vascular endothelial dysfunction induced by arsenic exposure. However, cell-cycle arrest induced by arsenic and its involvement in vascular dysfunction remain to be clarified. In this study, we employed primary porcine aortic endothelial cells to investigate regulatory mechanisms of G{sub 2}/M phase arrest induced by arsenite. Our study revealed that lower concentrations of arsenite (1 and 3 {mu}M) increased cell proliferation, whereas higher concentrations of arsenite (10, 20, and 30 {mu}M) inhibited cell proliferation together with correlated increases in G{sub 2}/M phase arrest. We found that this arsenite-induced G{sub 2}/M phase arrest was accompanied by accumulation and/or phosphorylation of checkpoint-related molecules, including p53, Cdc25B, Cdc25C, and securin. Inhibition of activations of these checkpoint-related molecules by caffeine significantly attenuated the 30-{mu}M arsenite-induced G{sub 2}/M phase arrest by 93%. Our data suggest that the DNA damage responsive kinases ATM (ataxia-telangiectasia mutated) and ATR (ATM and Rad3-related) play critical roles in arsenite-induced G{sub 2}/M phase arrest in aortic endothelial cells possibly via regulation of checkpoint-related signaling molecules including p53, Cdc25B, Cdc25C, and securin. (orig.)

  15. Elevated levels of the polo kinase Cdc5 override the Mec1/ATR checkpoint in budding yeast by acting at different steps of the signaling pathway.

    Directory of Open Access Journals (Sweden)

    Roberto Antonio Donnianni

    2010-01-01

    Full Text Available Checkpoints are surveillance mechanisms that constitute a barrier to oncogenesis by preserving genome integrity. Loss of checkpoint function is an early event in tumorigenesis. Polo kinases (Plks are fundamental regulators of cell cycle progression in all eukaryotes and are frequently overexpressed in tumors. Through their polo box domain, Plks target multiple substrates previously phosphorylated by CDKs and MAPKs. In response to DNA damage, Plks are temporally inhibited in order to maintain the checkpoint-dependent cell cycle block while their activity is required to silence the checkpoint response and resume cell cycle progression. Here, we report that, in budding yeast, overproduction of the Cdc5 polo kinase overrides the checkpoint signaling induced by double strand DNA breaks (DSBs, preventing the phosphorylation of several Mec1/ATR targets, including Ddc2/ATRIP, the checkpoint mediator Rad9, and the transducer kinase Rad53/CHK2. We also show that high levels of Cdc5 slow down DSB processing in a Rad9-dependent manner, but do not prevent the binding of checkpoint factors to a single DSB. Finally, we provide evidence that Sae2, the functional ortholog of human CtIP, which regulates DSB processing and inhibits checkpoint signaling, is regulated by Cdc5. We propose that Cdc5 interferes with the checkpoint response to DSBs acting at multiple levels in the signal transduction pathway and at an early step required to resect DSB ends.

  16. In-Situ ATR-FTIR and Surface Complexation Modeling Study of the Adsorption of Dimethylarsenic Acid and p-Arsanilic Acid on Iron Oxides

    Science.gov (United States)

    Goldberg, S. R.; Al-Abadleh, H.; Mitchell, W.

    2010-12-01

    Arsenic is an element that exists naturally in many rocks and minerals around the world, accumulates in petroleum, shale, and coal deposits as a result of biogeochemical processes, and is found in fly ash from fuel combustion. Arsenic compounds in their organic and inorganic forms pose both health and environmental risks. The environmental fate of arsenic compounds is controlled to a large extent by their surface interactions with inorganic and organic surfaces. We report results from applying the triple layer surface complexation model to adsorption isotherm and pH-envelope experimental data of dimethylarsenic acid, DMA, and p-arsanilic acid, p-AsA on the iron oxides, hematite and goethite. Ligand exchange reactions were based on the interpretation of ATR-FTIR spectra of DMA and p-AsA surface complexes. Surface coverage of the organoarsenicals was quantified in-situ from the spectral component at 840 cm-1. The best model fit to the DMA adsorption data was obtained using an outer-sphere complex, whereas for p-AsA, best model fit was obtained using two monodentate inner-sphere surface complexes. The significance of the results is discussed in relation to improving modeling tools used by environmental regulators. Accurate predictive modeling tools are needed for effective design of arsenic removal technologies using iron oxide minerals.

  17. In situ ATR-FTIR and surface complexation modeling studies on the adsorption of dimethylarsinic acid and p-arsanilic acid on iron-(oxyhydr)oxides.

    Science.gov (United States)

    Mitchell, William; Goldberg, Sabine; Al-Abadleh, Hind A

    2011-06-15

    Arsenic is an element that exists naturally in many rocks and minerals around the world. It also accumulates in petroleum, shale, oil sands, and coal deposits as a result of biogeochemical processes, and it has been found in fly ash from the combustion of solid biofuels. Arsenic compounds in their organic and inorganic forms pose both a health and an environmental risk, and continue to be a challenge to the energy industry. The environmental fate and removal technologies of arsenic compounds are controlled to a large extent by their surface interactions with inorganic and organic adsorbents. We report thermodynamic binding constants, K(binding), from applying the triple-layer surface complexation model to adsorption isotherm and pH envelope data for dimethylarsinic acid (DMA) and p-arsanilic acid (p-AsA) on hematite and goethite. Ligand exchange reactions were constructed based on the interpretation of ATR-FTIR spectra of DMA and p-AsA surface complexes. Surface coverage of adsorbates was quantified in situ from the spectral component at 840 cm(-1). The best fit to the DMA adsorption data was obtained using outer-sphere complex formation, whereas for p-AsA, the best fit was obtained using two monodentate inner-sphere surface complexes. The significance of the results is discussed in relation to improving modeling tools used by environmental regulators and the energy sector for optimum control of arsenic content in fuels. Copyright © 2011 Elsevier Inc. All rights reserved.

  18. ATR-FTIR spectroscopy study of the influence of pH and contact time on the adhesion of Shewanella putrefaciens bacterial cells to the surface of hematite.

    Science.gov (United States)

    Elzinga, Evert J; Huang, Jen-How; Chorover, Jon; Kretzschmar, Ruben

    2012-12-04

    Attachment of live cells of Shewanella putrefaciens strain CN-32 to the surface of hematite (α-Fe(2)O(3)) was studied with in situ ATR-FTIR spectroscopy at variable pH (4.5-7.7) and contact times up to 24 h. The IR spectra indicate that phosphate based functional groups on the cell wall play an important role in mediating adhesion through formation of inner-sphere coordinative bonds to hematite surface sites. The inner-sphere attachment mode of microbial P groups varies with pH, involving either a change in protonation or in coordination to hematite surface sites as pH is modified. At all pH values, spectra collected during the early stages of adhesion show intense IR bands associated with reactive P-groups, suggestive of preferential coordination of P-moieties at the hematite surface. Spectra collected after longer sorption times show distinct frequencies from cell wall protein and carboxyl groups, indicating that bacterial adhesion occurring over longer time scales is to a lesser degree associated with preferential attachment of P-based bacterial functional groups to the hematite surface. The results of this study demonstrate that pH and reaction time influence cell-mineral interactions, implying that these parameters play an important role in determining cell mobility and biofilm formation in aqueous geochemical environments.

  19. Glyphosate complexation to aluminium(III). An equilibrium and structural study in solution using potentiometry, multinuclear NMR, ATR-FTIR, ESI-MS and DFT calculations.

    Science.gov (United States)

    Purgel, Mihály; Takács, Zoltán; Jonsson, Caroline M; Nagy, Lajos; Andersson, Ingegärd; Bányai, István; Pápai, Imre; Persson, Per; Sjöberg, Staffan; Tóth, Imre

    2009-11-01

    The stoichiometries and stability constants of a series of Al(3+)-N-phosponomethyl glycine (PMG/H(3)L) complexes have been determined in acidic aqueous solution using a combination of precise potentiometric titration data, quantitative (27)Al and (31)P NMR spectra, ATR-FTIR spectrum and ESI-MS measurements (0.6M NaCl, 25 degrees C). Besides the mononuclear AlH(2)L(2+), Al(H(2)L)(HL), Al(HL)(2)(-) and Al(HL)L(2-), dimeric Al(2)(HL)L(+) and trinuclear Al(3)H(5)L(4)(2+) complexes have been postulated. (1)H and (31)P NMR data show that different isomers co-exist in solution and the isomerization reactions are slow on the (31)P NMR time scale. The geometries of monomeric and dimeric complexes likely double hydroxo bridged and double phosphonate bridged isomers have been optimized using DFT ab initio calculations starting from rational structural proposals. Energy calculations using the PCM solvation method also support the co-existence of isomers in solutions.

  20. UV but not X rays stimulate homologous recombination between sister chromatids and homologs in a Saccharomyces cerevisiae mec1 (ATR) hypomorphic mutant.

    Science.gov (United States)

    Fasullo, Michael; Sun, Mingzeng

    2008-12-15

    MEC1, the essential yeast ATM/ATR homolog, prevents replication fork collapse and is required for the cellular response to DNA damage. We had previously observed higher rates of spontaneous SCE, heteroallelic recombination and translocations in mec1-21 mutants, which still retain some G2 checkpoint function, compared to mec1 null mutants, which are completely defective in checkpoint function, and wild type. However, the types of DNA lesions that are more recombinogenic in mec1-21, compared to wild type, are unknown. Here, we measured DNA damage-associated SCE, homolog (heteroallelic) recombination, and homology-directed translocations in mec1-21, and characterized types of DNA damage-associated chromosomal rearrangements that occur in mec1-21. Although frequencies of UV-associated recombination were higher in mec1-21, the mutant was defective in double-strand break-associated SCE and heteroallelic recombination. Over-expression of Rad53 in mec1-21 reduced UV-associated recombination but did not suppress the defect in X-ray-associated recombination. Both X ray and UV exposure increased translocation frequencies in mec1-21, but the majority of the UV-associated products were non-reciprocal translocations. We suggest that although recombinational repair of double-stand breaks is less efficient in mec1 mutants, recombinants may be generated by other mechanisms, such as break-induced replication.

  1. Kinetic Parameters during Bis-GMA and TEGDMA Monomer Polymerization by ATR-FTIR: The Influence of Photoinitiator and Light Curing Source

    Directory of Open Access Journals (Sweden)

    Aline B. Denis

    2016-01-01

    Full Text Available This study aimed to analyze the kinetic parameters of two monomers using attenuated total reflectance Fourier transform infrared (ATR-FTIR: 2,2-bis-[4-(2-hydroxy-3-methacryloxypropyl-1-oxy-phenyl] propane (Bis-GMA and triethylene glycol dimethacrylate (TEGDMA. The following were calculated to evaluate the kinetic parameters: maximum conversion rate (Rpmax, time at the maximum polymerization rate (tmax, conversion at Rpmax, and total conversion recorded at the maximum conversion point after 300 s. Camphorquinone (CQ and phenyl propanedione (PPD were used in this study as photoinitiators, whereas N,N-dimethyl-p-toluidine (DMPT amine was used as a coinitiator. LED apparatus and halogen lamp were used in turn to evaluate the effect that light source had on the monomer kinetics. The mass concentration ratio for the three resin preparations was 0.7 : 0.3 for Bis-GMA and TEGDMA: R1 (CQ + DMPT, R2 (PPD + DMPT, and R3 (PPD + CQ + DMPT. The PPD association with the CQ photoinitiator altered the polymerization kinetics compared to a resin containing only the CQ photoinitiator. The light sources exhibited no significant differences for tmax of R1 and R3. Resins containing only the PPD initiator exhibited a higher tmax than those containing only CQ. However, the Rpmax decreased for resins containing the PPD photoinitiator.

  2. Study of Chemical Intermediates by Means of ATR-IR Spectroscopy and Hybrid Hard- and Soft-Modelling Multivariate Curve Resolution-Alternating Least Squares

    Directory of Open Access Journals (Sweden)

    Junxiu Ma

    2017-01-01

    Full Text Available 3,5-Diamino-1,2,4-triazole (DAT became a significant energetic materials intermediate, and the study of its reaction mechanism has fundamental significance in chemistry. The aim of this study is to investigate the ability of online attenuated total reflection infrared (ATR-IR spectroscopy combined with the novel approach of hybrid hard- and soft-modelling multivariate curve resolution-alternating least squares (HS-MCR analysis to monitor and detect changes in structural properties of compound during 3,5-diamino-1,2,4-triazole (DAT synthesis processes. The subspace comparison method (SCM was used to obtain the principal components number, and then the pure IR spectra of each substance were obtained by independent component analysis (ICA and HS-MCR. The extent of rotation ambiguity was estimated from the band boundaries of feasible solutions calculated using the MCR-BANDS procedure. There were five principal components including two intermediates in the process in the results. The reaction rate constants of DAT formation reaction were also obtained by HS-MCR. HS-MCR was used to analyze spectroscopy data in chemical synthesis process, which not only increase the information domain but also reduce the ambiguities of the obtained results. This study provides the theoretical basis for the optimization of synthesis process and technology of energetic materials and provides a strong technical support of research and development of energy material with extraordinary damage effects.

  3. Synthesis, physicochemical and spectroscopic characterization of copper(II)-polysaccharide pullulan complexes by UV-vis, ATR-FTIR, and EPR.

    Science.gov (United States)

    Mitić, Zarko; Cakić, Milorad; Nikolić, Goran M; Nikolić, Ružica; Nikolić, Goran S; Pavlović, Radmila; Santaniello, Enzo

    2011-02-15

    Bioactive copper(II) complexes with polysaccharides, like pullulan and dextran, are important in both veterinary and human medicine for the treatment of hypochromic microcitary anemia and hypocupremia. In aqueous alkaline solutions, Cu(II) ion forms complexes with the exopolysaccharide pullulan and its reduced low-molecular derivative. The metal content and the solution composition depend on pH, temperature, and time of the reaction. The complexing process begins in a weak alkali solution (pH >7) and involves OH groups of pullulan monomer (glucopyranose) units. Complexes of Cu(II) ion with reduced low-molecular pullulan (RLMP, M(w) 6000 g mol(-1)) were synthesized in water solutions, at the boiling temperature and at different pH values ranging from 7.5 to 12. The Cu(II) complex formation with RLMP was analyzed by UV-vis spectrophotometry and other physicochemical methods. Spectroscopic characterizations (ATR-FTIR, FT-IRIS, and EPR) and spectra-structure correlation of Cu(II)-RLMP complexes were also carried out. Copyright © 2010 Elsevier Ltd. All rights reserved.

  4. Quantitative assessment of copper proteinates used as animal feed additives using ATR-FTIR spectroscopy and powder X-ray diffraction (PXRD) analysis.

    Science.gov (United States)

    Cantwell, Caoimhe A; Byrne, Laurann A; Connolly, Cathal D; Hynes, Michael J; McArdle, Patrick; Murphy, Richard A

    2017-08-01

    The aim of the present work was to establish a reliable analytical method to determine the degree of complexation in commercial metal proteinates used as feed additives in the solid state. Two complementary techniques were developed. Firstly, a quantitative attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopic method investigated modifications in vibrational absorption bands of the ligand on complex formation. Secondly, a powder X-ray diffraction (PXRD) method to quantify the amount of crystalline material in the proteinate product was developed. These methods were developed in tandem and cross-validated with each other. Multivariate analysis (MVA) was used to develop validated calibration and prediction models. The FTIR and PXRD calibrations showed excellent linearity (R2 > 0.99). The diagnostic model parameters showed that the FTIR and PXRD methods were robust with a root mean square error of calibration RMSEC ≤3.39% and a root mean square error of prediction RMSEP ≤7.17% respectively. Comparative statistics show excellent agreement between the MVA packages assessed and between the FTIR and PXRD methods. The methods can be used to determine the degree of complexation in complexes of both protein hydrolysates and pure amino acids.

  5. DNA damage induces a kinetochore-based ATM/ATR-independent SAC arrest unique to the first meiotic division in mouse oocytes.

    Science.gov (United States)

    Lane, Simon I R; Morgan, Stephanie L; Wu, Tianyu; Collins, Josie K; Merriman, Julie A; ElInati, Elias; Turner, James M; Jones, Keith T

    2017-10-01

    Mouse oocytes carrying DNA damage arrest in meiosis I, thereby preventing creation of embryos with deleterious mutations. The arrest is dependent on activation of the spindle assembly checkpoint, which results in anaphase-promoting complex (APC) inhibition. However, little is understood about how this checkpoint is engaged following DNA damage. Here, we find that within minutes of DNA damage checkpoint proteins are assembled at the kinetochore, not at damage sites along chromosome arms, such that the APC is fully inhibited within 30 min. Despite this robust response, there is no measurable loss in k-fibres, or tension across the bivalent. Through pharmacological inhibition we observed that the response is dependent on Mps1 kinase, aurora kinase and Haspin. Using oocyte-specific knockouts we find the response does not require the DNA damage response kinases ATM or ATR. Furthermore, checkpoint activation does not occur in response to DNA damage in fully mature eggs during meiosis II, despite the divisions being separated by just a few hours. Therefore, mouse oocytes have a unique ability to sense DNA damage rapidly by activating the checkpoint at their kinetochores. © 2017. Published by The Company of Biologists Ltd.

  6. Determination of trans Fat in Selected Fast Food Products and Hydrogenated Fats of India Using Attenuated Total Reflection Fourier Transform Infrared (ATR-FTIR) Spectroscopy.

    Science.gov (United States)

    Khan, Mohd Umar; Hassan, Mohammad Fahimul; Rauf, Abdul

    2017-01-01

    This paper reports the application of a simple and rapid method for the determination of trans fatty acid (TFA) content in some of the selected Indian fast food products and hydrogenated fats using Fourier transform infrared (FTIR) spectroscopy in conjunction with second derivative procedure. FTIR spectroscopy has been successfully applied to trans measurement using the absorbance bands at or near 966 cm-1 in the FTIR spectra. It was found from the analysis that TFA content of fast food product was ranging from 1.57% to 3.83% of the total fat while for hydrogenated fats, comparatively large quantity of TFA was detected in the range of 3.31% to 4.73%. Since GC-FID is most widely used method for the determination of fatty acid (FA) composition, this method was used for the sake of comparison. Value of regression coefficient was found very close to one (0.99503) with standard deviation of 0.10247 showing a good agreement between GC-FID and proposed ATR-FTIR method.

  7. Effects of metal ions on entero-soluble poly(methacrylic acid-methyl methacrylate) coating: a combined analysis by ATR-FTIR spectroscopy and computational approaches.

    Science.gov (United States)

    Cilurzo, Francesco; Gennari, Chiara G M; Selmin, Francesca; Vistoli, Giulio

    2010-04-05

    Poly(methacrylic acid-methyl methacrylate)s (HPMMs) are pH-dependent polymers which ionize and form salts (PMMs) in neutral conditions. Despite their wide use in tablet coating, the interactions of PMMs with electrolytes present in biorelevant media and luminal fluids have been scantly investigated. The data generated in the current work provide the basic information on the effect of bivalent cations, namely, Ca2+, Zn2+ and Mn2+, on the HPMMs' solubility and, consequently, on the performances (disintegration and drug dissolution) of acetaminophen gastroresistant tablets when exposed to fluid containing such salts. The interactions between polymers and metal ions were analyzed by ATR-FTIR spectroscopy and in silico combining molecular dynamics simulations to explore the conformational profiles of several oligomers with different M(w), taken as model of the polymers, with ab initio and semiempirical calculations in the gas phase. The computational results agree with the experimental data in terms of spatial disposition of the bications with respect to PMMs (Ca2+ and Mn2+ as bidentate form and Zn2+ as monodentate ligand) and interaction strength (Zn2+ > Mn(2+) > Ca2+). The tablet disintegration and dissolution rate of acetaminophen were strongly affected by the interactions of the dissolving copolymer with the metal ions which led to coating insolubilization. These preliminary results underline that the ingestion of metal ions at high concentrations could affect the drug liberation from gastroresistant dosage forms.

  8. Attenuated Total Reflection Fourier Transform Infrared (ATR FT-IR) Spectroscopy as a Forensic Method to Determine the Composition of Inks Used to Print the United States One-cent Blue Benjamin Franklin Postage Stamps of the 19th Century.

    Science.gov (United States)

    Brittain, Harry G

    2016-01-01

    Through the combined use of infrared (IR) absorption spectroscopy and attenuated total reflectance (ATR) sampling, the composition of inks used to print the many different types of one-cent Benjamin Franklin stamps of the 19th century has been established. This information permits a historical evaluation of the formulations used at various times, and also facilitates the differentiation of the various stamps from each other. In two instances, the ink composition permits the unambiguous identification of stamps whose appearance is identical, and which (until now) have only been differentiated through estimates of the degree of hardness or softness of the stamp paper, or through the presence or absence of a watermark in the paper. In these instances, the use of ATR Fourier transform infrared spectroscopy (FT-IR) spectroscopy effectively renders irrelevant two 100-year-old practices of stamp identification. Furthermore, since the use of ATR sampling makes it possible to obtain the spectrum of a stamp still attached to its cover, it is no longer necessary to identify these blue Franklin stamps using their cancellation dates. © The Author(s) 2015.

  9. A novel mutation in the putative DNA helicase XH2 is responsible for male-to-female sex reversal associated with an atypical form of the ATR-X syndrome

    Energy Technology Data Exchange (ETDEWEB)

    Ion, A.; Telvi, L.; Galacteros, F.; McElreavey, K. [Institut Pasteur, Paris (France)] [and others

    1996-06-01

    We describe a pedigree presenting X-linked severe mental retardation associated with multiple congenital abnormalities and 46,XY gonadal dysgenesis, leading in one family member to female gender assignment. Female carriers are unaffected. The dysmorphic features are similar to those described in the {alpha}-thalassemia and mental retardation (ATR-X) syndrome, although there is no clinical evidence of {alpha}-thalassemia in this family. In addition, the family had other clinical features not previously observed in the ATR-X syndrome, including partial optic-nerve atrophy and partial ocular albinism. Mutations in a putative DNA helicase, termed XH2, have been reported to give rise to the ATR-X syndrome. We screened the YCH2 gene for mutations in affected members of the family and identified a 4-bp deletion at an intron/exon boundary that removes an invariant 3{prime} splice-acceptor site. The mutation cosegregates with the syndrome. The genomic deletion causes missplicing of the pre-mRNA, which results in the loss of 8 bp of coding sequence, thereby generating a frameshift and a downstream premature stop codon. Our finding increases the range of clinical features associated with mutations in the XH2 gene. 17 refs., 4 figs., 2 tabs.

  10. Uso de plasma rico en plaquetas autólogo en el tratamiento quirúrgico de pseudoartrosis atrófica de fémur y tibia

    Directory of Open Access Journals (Sweden)

    Julio C Vejarano-Solano

    2013-04-01

    Full Text Available Objetivo: Describir y evaluar los resultados del tratamiento quirúrgico de pseudoartrosis atrófica de fémur o tibia mediante el uso de plasma rico en plaquetas (PRP autólogo. Material y métodos: Estudio descriptivo longitudinal de 20 casos (19 pacientes de pseudoartrosis atrófica de fémur o tibia tratados quirúrgicamente con PRP autólogo en el Hospital Nacional Cayetano Heredia de Lima, desde enero del 2008 hasta enero del 2012. El PRP fue preparado en el banco de sangre del hospital a partir de una unidad de sangre autóloga. Se evaluó el tiempo de consolidación ósea mediante radiografías seriadas y se registraron las complicaciones. Resultados: Se incluyeron 12 varones y 7 mujeres, con edad promedio de 33,8 años (15 a 67 años. Se evidenció consolidación en el 95% de los pacientes, el tiempo promedio para la consolidación fue 25 semanas. Se observó un caso de persistencia de infección con cultivo positivo a E. coli y un caso de refractura. Conclusiones: El PRP autólogo tiene un efecto beneficioso en la reparación del tejido óseo en casos de pseudoartrosis atrófica.

  11. Fuentes de variabilidad en el diagnóstico de gastritis atrófica multifocal asociada con la infección por Helicobacter pylori1

    Science.gov (United States)

    Bravo, Luis Eduardo; Bravo, Juan Carlos; Realpe, José Luis; Zarama, Guillermo; Piazuelo, MarÍa Blanca; Correa, Pelayo

    2014-01-01

    RESUMEN Introducción El mapeo de las diferentes regiones del estómago y el número de fragmentos de mucosa gástrica disponibles para evaluación histopatológica son fuentes importantes de variación en el momento de clasificar y hacer la gradación de la gastritis crónica. Objetivos Estimar la sensibilidad del número de fragmentos de mucosa gástrica necesarios para establecer los diagnósticos de gastritis atrófica con metaplasia intestinal (MI), displasia y estado de infección por Helicobacter pylori. Además evaluar la variabilidad intra-observador en la clasificación de estas lesiones precursoras del cáncer gástrico. Materiales y métodos En una cohorte de 6 años de seguimiento se evaluaron 1,958 procedimientos de endoscopia realizados por dos gastroenterólogos. En cada procedimiento y de cada participante se obtuvieron 5 biopsias de mucosa gástrica que representaban antro, incisura angularis y cuerpo. Un único patólogo hizo la interpretación histológica de las 5 biopsias y proporcionó un diagnóstico definitivo global que se utilizó como patrón de referencia. Cada fragmento de mucosa gástrica examinado condujo a un diagnóstico individual para cada biopsia que se comparó con el patrón de referencia. La variabilidad intra-observador se evaluó en 127 personas que corresponden a una muestra aleatoria de 20% del total de endoscopias hechas a los 72 meses de seguimiento. Resultados La sensibilidad del diagnóstico de MI y displasia gástrica aumentó de manera significativa con el número de fragmentos de mucosa gástrica evaluados El sitio anatómico de mayor sensibilidad para el diagnóstico de MI y displasia fue la incisura angularis. Para descubrir H. pylori se logró alta sensibilidad con el estudio de un solo fragmento de mucosa gástrica (95.9%) y fue independiente del sitio de obtención de la biopsia. El acuerdo intra-observador para el diagnóstico de gastritis crónica fue 86.1% con valor kappa de 0.79 IC 95% (0.76-0.85). Las

  12. Attenuated total reflectance-mid infrared spectroscopy (ATR-MIR) coupled with independent components analysis (ICA): A fast method to determine plasticizers in polylactide (PLA).

    Science.gov (United States)

    Kassouf, Amine; Ruellan, Alexandre; Jouan-Rimbaud Bouveresse, Delphine; Rutledge, Douglas N; Domenek, Sandra; Maalouly, Jacqueline; Chebib, Hanna; Ducruet, Violette

    2016-01-15

    Compliance of plastic food contact materials (FCMs) with regulatory specifications in force, requires a better knowledge of their interaction phenomena with food or food simulants in contact. However these migration tests could be very complex, expensive and time-consuming. Therefore, alternative procedures were introduced based on the determination of potential migrants in the initial material, allowing the use of mathematical modeling, worst case scenarios and other alternative approaches, for simple and fast compliance testing. In this work, polylactide (PLA), plasticized with four different plasticizers, was considered as a model plastic formulation. An innovative analytical approach was developed, based on the extraction of qualitative and quantitative information from attenuated total reflectance (ATR) mid-infrared (MIR) spectral fingerprints, using independent components analysis (ICA). Two novel chemometric methods, Random_ICA and ICA_corr_y, were used to determine the optimal number of independent components (ICs). Both qualitative and quantitative information, related to the identity and the quantity of plasticizers in PLA, were retrieved through a direct and fast analytical method, without any prior sample preparations. Through a single qualitative model with 11 ICs, a clear and clean classification of PLA samples was obtained, according to the identity of plasticizers incorporated in their formulations. Moreover, a quantitative model was established for each formulation, correlating proportions estimated by ICA and known concentrations of plasticizers in PLA. High coefficients of determination (higher than 0.96) and recoveries (higher than 95%) proved the good predictability of the proposed models. Copyright © 2015 Elsevier B.V. All rights reserved.

  13. Reforma legislativa da televisão no Chile ante o futuro digital: um passo à frente, outro atrás

    Directory of Open Access Journals (Sweden)

    Lucas Sierra

    2010-05-01

    Full Text Available Este trabalho analisa criticamente a proposta de reforma à legislação televisiva que o Governo chileno enviou ao Congresso com vistas à futura tecnologia digital. A reforma é conformada por dois projetos de lei: um se refere à Lei 18.838, a Lei Geral de Televisão, e o outro à Lei 19.132, relativa à Televisão Nacional de Chile. Ambos os projetos são analisados aqui. O primeiro, sustenta-se, propõe um avanço interessante: a incorporação da categoria de serviços “intermediários” de telecomunicações à futura radiodifusão televisiva digital. Este é um passo no sentido da convergência que a tecnologia digital impulsiona entre os distintos serviços de telecomunicações. Este avanço, contudo, se vê limitado por outras propostas do projeto, como, por exemplo, o estabelecimento de “campanhas de utilidade ou interesse público” obrigatórias para os canais, o que representa uma intervenção estatal injustificada. O segundo projeto, sobre a Televisão Nacional de Chile, também é criticado. A razão fundamental é que ele estende e torna menos nítido o objetivo desta empresa estatal, lançando uma sombra de dúvida sobre o critério de subsidiariedade estatal que inspira nossa regulação econômica, ao mesmo tempo em que se propõe a romper o pé de igualdade que existe entre a televisão estatal e a privada. Em síntese, conclui-se, esta reforma legislativa dá um passo adiante, mas também um atrás.

  14. In situ ATR-IR spectroscopy study of adsorbed protein: Visible light denaturation of bovine serum albumin on TiO{sub 2}

    Energy Technology Data Exchange (ETDEWEB)

    Bouhekka, A., E-mail: Ahmed.Bouhekka@unige.ch [Departement de Chimie Physique, 30 Quai Ernest-Ansermet, CH-1211 Geneve 4 (Switzerland); Laboratoire de Physique des Couches Minces et Materiaux pour l' Electronique, Universite d' Oran Es-Senia, 31100 Oran (Algeria); Departement de Physique, Universite Hassiba Ben Bouali, 02000 Chlef (Algeria); Buergi, T., E-mail: Thomas.Buergi@unige.ch [Departement de Chimie Physique, 30 Quai Ernest-Ansermet, CH-1211 Geneve 4 (Switzerland)

    2012-11-15

    Highlights: Black-Right-Pointing-Pointer We study the behavior of BSA protein adsorbed on TiO{sub 2} using in situ IR spectroscopy. Black-Right-Pointing-Pointer We examine the secondary structure changes during light exposure. Black-Right-Pointing-Pointer Visible light illumination creates random coil in the secondary structure of BSA. Black-Right-Pointing-Pointer The denaturation of BSA adsorbed on TiO{sub 2} under visible light irradiation is irreversible. - Abstract: In this work in situ Fourier transform infrared-attenuated total reflection (FTIR-ATR) spectroscopy in a flow-through cell was used to study the effect of visible light irradiation on bovine serum albumin (BSA) adsorbed on porous TiO{sub 2} films. The experiments were performed in water at concentrations of 10{sup -6} mol/l at room temperature. The curve fitting method of the second derivative spectra allowed us to explore details of the secondary structure of pure BSA in water and conformation changes upon adsorption as well as during and after illumination by visible light. The results clearly show that visible light influences the conformation of adsorbed BSA. The appearance of a shift of the amide I band, in the original spectra, from 1653 cm{sup -1} to 1648 cm{sup -1}, is interpreted by the creation of random coil in the secondary structure of adsorbed BSA. The second derivative analysis of infrared spectra permits direct quantitative analysis of the secondary structural components of BSA, which show that the percentage of {alpha}-helix decreases during visible light illumination whereas the percentage of random coil increases.

  15. Determinação quantitativa da concentração de silicone em antiespumantes por espectroscopia FT-IR / ATR e calibração multivariada Quantitative determination of silicone in antifoaming products by FT-IR / ATR spectroscopy and multivariate calibration

    Directory of Open Access Journals (Sweden)

    Marcelo H. F. Garcia

    2004-12-01

    Full Text Available Neste trabalho apresentamos uma alternativa para a dosagem do teor de silicone (polidimetilsiloxano em antiespumantes por meio da técnica de espectroscopia no infravermelho com transformada de Fourier (FT-IR, com a utilização do acessório de reflectância total atenuada (ATR. Os espectros foram registrados na faixa espectral de 2500 a 780 cm-1, com resolução de 4 cm-1 e 128 varreduras. A calibração de um modelo linear por meio da utilização do método de mínimos quadrados parciais (PLS aplicado aos espectros foi capaz de determinar satisfatoriamente a concentração de silicone nas amostras. Este método é de extrema importância para indústrias produtoras de antiespumantes siliconados, uma vez que o desempenho de tais produtos geralmente é avaliado em função da viscosidade dos mesmos. Muitas vezes no processo de fabricação de tais produtos ocorre uma homogeneização incompleta do silicone no solvente, o que leva a resultados de viscosidade que não são representativos das amostras analisadas. A determinação da concentração do teor de silicone é uma importante ferramenta para o Controle Estatístico de Processo (CEP, pois evita o desperdício de matérias-primas empregadas na fabricação dos antiespumantes.This work presents an alternative method to determine the concentration of silicone (polydimethylsiloxane in antifoaming products using Fourier Transformed Infrared Spectroscopy (FT-IR with the attenuated total reflectance (ATR accessory. The spectra were recorded in the range from 2500 to 780 cm-1, with a resolution of 4 cm-1 and 128 scans. With calibration of a linear model using PLS regression method applied to spectral data we were able to determine the silicone concentration in the samples. This method may be useful for antifoaming producers since the performance of such products generally is evaluated as a function of their viscosity. Moreover, during manufacturing an incomplete homogenization of silicone in the

  16. STRATEGI PEMILIHAN JENIS TANAMAN UNTUK MENDUKUNG REHABILITASI PESISIR BERDASARKAN KARAKTERISTIK FISIK MAKRO DI MUARA SUNGAI PROGO (Strategy of Plant-Species Selection for Coastal Rehabilition Based on Macro-physical Characteristics in Progo Estuary

    Directory of Open Access Journals (Sweden)

    Budiadi Budiadi

    2016-09-01

    Full Text Available ABSTRAK Muara Sungai Progo memiliki peran yang penting secara ekologis dan sosial-ekonomis bagi masyarakat Yogyakarta bagian selatan. Mengingat kondisinya kurang baik, maka dibutuhkan strategi rehabilitasi dengan jenis tanaman yang tepat. Penelitian ini bertujuan untuk memberikan arahan jenis tanaman yang sesuai untuk rehabilitasi pesisir muara Sungai Progo berdasarkan karakteristik fisik makro lahan. Penelitian ini menggunakan teknologi sistem informasi geografis (SIG dengan metode digitasi dan overlay peta menggunkan software Arc GIS (ver. 10.0 ESRI sebagai acuan analisis dan interpretasi peta kondisi muara selama 10 tahun terakhir, sehingga diketahui lokasi-lokasi yang tetap dari waktu ke waktu, dikombinasikan dengan pemetaan genangan air, salinitas dan sebaran jenis endapan. Lokasi penelitian adalah areal pasang surut yang relatif sempit (13,10 ha, namun berperan penting dalam rehabilitasi seluruh areal m