WorldWideScience

Sample records for aster microtubule dynamics

  1. General theory for the mechanics of confined microtubule asters

    International Nuclear Information System (INIS)

    In cells, dynamic microtubules organize into asters or spindles to assist positioning of organelles. Two types of forces are suggested to contribute to the positioning process: (i) microtubule-growth based pushing forces; and (ii) motor protein mediated pulling forces. In this paper, we present a general theory to account for aster positioning in a confinement of arbitrary shape. The theory takes account of microtubule nucleation, growth, catastrophe, slipping, as well as interaction with cortical force generators. We calculate microtubule distributions and forces acting on microtubule organizing centers in a sphere and in an ellipsoid. Positioning mechanisms based on both pushing forces and pulling forces can be distinguished in our theory for different parameter regimes or in different geometries. In addition, we investigate positioning of microtubule asters in the case of asymmetric distribution of motors. This analysis enables us to characterize situations relevant for Caenorrhabditis elegans embryos. (paper)

  2. Shape-motion relationships of centering microtubule asters.

    Science.gov (United States)

    Tanimoto, Hirokazu; Kimura, Akatsuki; Minc, Nicolas

    2016-03-28

    Although mechanisms that contribute to microtubule (MT) aster positioning have been extensively studied, still little is known on how asters move inside cells to faithfully target a cellular location. Here, we study sperm aster centration in sea urchin eggs, as a stereotypical large-scale aster movement with extreme constraints on centering speed and precision. By tracking three-dimensional aster centration dynamics in eggs with manipulated shapes, we show that aster geometry resulting from MT growth and interaction with cell boundaries dictates aster instantaneous directionality, yielding cell shape-dependent centering trajectories. Aster laser surgery and modeling suggest that dynein-dependent MT cytoplasmic pulling forces that scale to MT length function to convert aster geometry into directionality. In contrast, aster speed remains largely independent of aster size, shape, or absolute dynein activity, which suggests it may be predominantly determined by aster growth rate rather than MT force amplitude. These studies begin to define the geometrical principles that control aster movements. PMID:27022090

  3. Collective behavior of minus-ended motors in mitotic microtubule asters gliding toward DNA

    International Nuclear Information System (INIS)

    Microtubules (MTs) nucleated by centrosomes form star-shaped structures referred to as asters. Aster motility and dynamics is vital for genome stability, cell division, polarization and differentiation. Asters move either toward the cell center or away from it. Here, we focus on the centering mechanism in a membrane independent system of Xenopus cytoplasmic egg extracts. Using live microscopy and single particle tracking, we find that asters move toward chromatinized DNA structures. The velocity and directionality profiles suggest a random-walk with drift directed toward DNA. We have developed a theoretical model that can explain this movement as a result of a gradient of MT length dynamics and MT gliding on immobilized dynein motors. In simulations, the antagonistic action of the motor species on the radial array of MTs leads to a tug-of-war purely due to geometric considerations and aster motility resembles a directed random-walk. Additionally, our model predicts that aster velocities do not change greatly with varying initial distance from DNA. The movement of asymmetric asters becomes increasingly super-diffusive with increasing motor density, but for symmetric asters it becomes less super-diffusive. The transition of symmetric asters from superdiffusive to diffusive mobility is the result of number fluctuations in bound motors in the tug-of-war. Overall, our model is in good agreement with experimental data in Xenopus cytoplasmic extracts and predicts novel features of the collective effects of motor-MT interactions. (paper)

  4. The microtubule aster formation and its role in nuclear envelope assembly around the sperm chromatin in Xenopus egg extracts

    Institute of Scientific and Technical Information of China (English)

    YANG Ning; CHEN Zhongcai; LU Ping; ZHANG Chuanmao; ZHAI Zhonghe; TANG Xiaowei

    2003-01-01

    Nuclear envelope is a dynamic structure in the cell cycle. At the beginning of mitosis, nuclear envelope breaks down and its components disperse into the cytoplasm. At the end of mitosis, nuclear envelope reassembles using the dispersed components. Searching for the mechanisms of the nuclear disassembly and reassembly has for a long time been one of the key projects for cell biologists. In this report we show that microtubules take a role in the nuclear envelope assembly around the sperm chromatin in Xenopus egg extracts. Microtubule cytoskeleton has been demonstrated to take roles in the transport of intracellular membranes such as Golgi and ER vesicles. We found that the nuclear envelope assembly needs functional microtubules. At the beginning of the nuclear assembly, microtubules nucleated to form a microtubule aster around the centrosome at the base of the sperm head. Using the microtubule drug colchicine to disrupt the microtubule nucleation, nuclear envelope reassembly was seriously inhibited. If the microtubules were stabilized by taxol, another microtubule drug, the nuclear envelope reassembly was also interfered, although a significantly large aster formed around the chromatin. Based on these observations, we propose that microtubules play an important role in the nuclear envelope reassembly maybe by transporting the nuclear envelope precursors to the chromatin surfaces.

  5. A Mechanistic Model for the Organization of Microtubule Asters by Motor and Non-Motor Proteins in a Mammalian Mitotic ExtractD⃞

    OpenAIRE

    Chakravarty, Arijit; Howard, Louisa; Compton, Duane A.

    2004-01-01

    We used computer simulation to understand the functional relationships between motor (dynein, HSET, and Eg5) and non-motor (NuMA) proteins involved in microtubule aster organization. The simulation accurately predicted microtubule organization under all combinations of motor and non-motor proteins, provided that microtubule cross-links at minus-ends were dynamic, and dynein and HSET were restricted to cross-linking microtubules in parallel orientation only. A mechanistic model was derived fro...

  6. Dynamics of Microtubule Instabilities

    CERN Document Server

    Antal, T; Redner, S

    2007-01-01

    We investigate the dynamics of an idealized model of microtubule growth that evolves by: (i) attachment of guanosine triphosphate (GTP) at rate lambda, (ii) conversion of GTP to guanosine diphosphate (GDP) at rate 1, and (iii) detachment of GDP at rate mu. As a function of these rates, a microtubule can grow steadily or its length can fluctuate wildly. For mu=0, we find the exact tubule and GTP cap length distributions, and power-law length distributions of GTP and GDP islands. For mu=infinity, we argue that the time between catastrophes, where the microtubule shrinks to zero length, scales as exp(lambda). We also find the phase boundary between a growing and shrinking microtubule.

  7. Regulation of microtubule dynamic instability

    NARCIS (Netherlands)

    B. van der Vaart (Babet); A.S. Akhmanova (Anna); A. Straube (Anne)

    2009-01-01

    textabstractProper regulation of MT (microtubule) dynamics is essential for various vital processes, including the segregation of chromosomes, directional cell migration and differentiation. MT assembly and disassembly is modulated by a complex network of intracellular factors that co-operate or ant

  8. Expression of Nucleolin Affects Microtubule Dynamics.

    Science.gov (United States)

    Gaume, Xavier; Place, Christophe; Delage, Helene; Mongelard, Fabien; Monier, Karine; Bouvet, Philippe

    2016-01-01

    Nucleolin is present in diverse cellular compartments and is involved in a variety of cellular processes from nucleolar structure and function to intracellular trafficking, cell adhesion and migration. Recently, nucleolin has been localized at the mature centriole where it is involved in microtubule nucleation and anchoring. Although this new function of nucleolin linked to microtubule regulation has been identified, the global effects of nucleolin on microtubule dynamics have not been addressed yet. In the present study, we analyzed the roles of nucleolin protein levels on global microtubule dynamics by tracking the EB3 microtubule plus end binding protein in live cells. We have found that during microtubule growth phases, nucleolin affects both the speed and life time of polymerization and by analyzing catastrophe events, we showed that nucleolin reduces catastrophe frequency. This new property of nucleolin was then confirmed in a cold induced microtubule depolymerization experiment in which we have found that cold resistant microtubules were totally destabilized in nucleolin depleted cells. Altogether, our data demonstrate a new function of nucleolin on microtubule stabilization, thus bringing novel insights into understanding the multifunctional properties of nucleolin in healthy and cancer cells. PMID:27309529

  9. Expression of Nucleolin Affects Microtubule Dynamics.

    Directory of Open Access Journals (Sweden)

    Xavier Gaume

    Full Text Available Nucleolin is present in diverse cellular compartments and is involved in a variety of cellular processes from nucleolar structure and function to intracellular trafficking, cell adhesion and migration. Recently, nucleolin has been localized at the mature centriole where it is involved in microtubule nucleation and anchoring. Although this new function of nucleolin linked to microtubule regulation has been identified, the global effects of nucleolin on microtubule dynamics have not been addressed yet. In the present study, we analyzed the roles of nucleolin protein levels on global microtubule dynamics by tracking the EB3 microtubule plus end binding protein in live cells. We have found that during microtubule growth phases, nucleolin affects both the speed and life time of polymerization and by analyzing catastrophe events, we showed that nucleolin reduces catastrophe frequency. This new property of nucleolin was then confirmed in a cold induced microtubule depolymerization experiment in which we have found that cold resistant microtubules were totally destabilized in nucleolin depleted cells. Altogether, our data demonstrate a new function of nucleolin on microtubule stabilization, thus bringing novel insights into understanding the multifunctional properties of nucleolin in healthy and cancer cells.

  10. Association of Microtubule Dynamics with Chronic Epilepsy.

    Science.gov (United States)

    Xu, Xin; Hu, Yida; Xiong, Yan; Li, Zhonggui; Wang, Wei; Du, Chao; Yang, Yong; Zhang, Yanke; Xiao, Fei; Wang, Xuefeng

    2016-09-01

    Approximately 30 % of epilepsy cases are refractory to current pharmacological treatments through unknown mechanisms. Much work has been done on the role of synaptic components in the pathogenesis of epilepsy, but relatively little attention has been given to the potential role of the microtubules. We investigated the level of microtubule dynamic in 30 human epileptic tissues and two different chronic epilepsy rat models. The administration of microtubule-modulating agent attenuated the progression of chronic epilepsy. By contrast, microtubule-depolymerizing agent aggravated the progression of chronic epilepsy. The electrophysiological index by whole-cell clamp was used to investigate the neuronal excitation and inhibitory synaptic transmission in brain slices after administration of microtubule-modulating agent and microtubule-depolymerizing agent. Interestingly, we found that microtubule-modulating agent significantly increased the frequency of action potential firing in interneurons, and significantly promoted the amplitudes and frequencies of miniature inhibitory postsynaptic currents. Microtubule-depolymerizing agent had an opposite effect. These findings suggest that modulating hyperdynamic microtubules may take an anti-epileptic effect via postsynaptic mechanisms in interneurons. It could represent a potential pharmacologic target in epilepsy treatment. PMID:26377107

  11. Microtubule dynamics: Caps, catastrophes, and coupled hydrolysis

    DEFF Research Database (Denmark)

    Flyvbjerg, H.; Holy, T.E.; Leibler, S.

    1996-01-01

    An effective theory is formulated for the dynamics of the guanosine triphosphate (GTP) cap believed to stabilize growing microtubules. The theory provides a ''coarse-grained'' description of the cap's dynamics. ''Microscopic'' details, such as the microtubule lattice structure and the fate of its...... data. A constant nonzero catastrophe rare, identical for both microtubule ends, is predicted at large growth rates. The delay time for dilution-induced catastrophes is stochastic with a simple distribution that fits the experimental one and, like the experimental one, does not depend on the rate of....... A recent experimental result for the size of the minimal cap that can stabilize a microtubule is shown to agree with the result predicted by the cap model, after its parameters have been extracted from previous experimental results. Thus the effective theory and cap model presented here provide a...

  12. Microtubule dynamics: Caps, catastrophes, and coupled hydrolysis

    DEFF Research Database (Denmark)

    Flyvbjerg, H.; Holy, T.E.; Leibler, S.

    1996-01-01

    probability distributions relating to available experimental data are derived. Caps are found to be short and the total rate of hydrolysis at a microtubule end is found to be dynamically coupled to growth. The so-called catastrophe rate is a simple function of the microtubule growth rare and fits experimental...... data. A constant nonzero catastrophe rare, identical for both microtubule ends, is predicted at large growth rates. The delay time for dilution-induced catastrophes is stochastic with a simple distribution that fits the experimental one and, like the experimental one, does not depend on the rate of...... unified description of several apparently contradictory experimental data. Experimental results for the catastrophe rate at different concentrations of magnesium ions and of microtubule associated proteins are discussed in terms of the model. Feasible experiments are suggested that can provide decisive...

  13. Microtubule segment stabilization by RASSF1A is required for proper microtubule dynamics and Golgi integrity

    Science.gov (United States)

    Arnette, Christopher; Efimova, Nadia; Zhu, Xiaodong; Clark, Geoffrey J.; Kaverina, Irina

    2014-01-01

    The tumor suppressor and microtubule-associated protein Ras association domain family 1A (RASSF1A) has a major effect on many cellular processes, such as cell cycle progression and apoptosis. RASSF1A expression is frequently silenced in cancer and is associated with increased metastasis. Therefore we tested the hypothesis that RASSF1A regulates microtubule organization and dynamics in interphase cells, as well as its effect on Golgi integrity and cell polarity. Our results show that RASSF1A uses a unique microtubule-binding pattern to promote site-specific microtubule rescues, and loss of RASSF1A leads to decreased microtubule stability. Furthermore, RASSF1A-associated stable microtubule segments are necessary to prevent Golgi fragmentation and dispersal in cancer cells and maintain a polarized cell front. These results indicate that RASSF1A is a key regulator in the fine tuning of microtubule dynamics in interphase cells and proper Golgi organization and cell polarity. PMID:24478455

  14. Integrin-linked kinase regulates interphase and mitotic microtubule dynamics.

    Directory of Open Access Journals (Sweden)

    Simin Lim

    Full Text Available Integrin-linked kinase (ILK localizes to both focal adhesions and centrosomes in distinct multiprotein complexes. Its dual function as a kinase and scaffolding protein has been well characterized at focal adhesions, where it regulates integrin-mediated cell adhesion, spreading, migration and signaling. At the centrosomes, ILK regulates mitotic spindle organization and centrosome clustering. Our previous study showed various spindle defects after ILK knockdown or inhibition that suggested alteration in microtubule dynamics. Since ILK expression is frequently elevated in many cancer types, we investigated the effects of ILK overexpression on microtubule dynamics. We show here that overexpressing ILK in HeLa cells was associated with a shorter duration of mitosis and decreased sensitivity to paclitaxel, a chemotherapeutic agent that suppresses microtubule dynamics. Measurement of interphase microtubule dynamics revealed that ILK overexpression favored microtubule depolymerization, suggesting that microtubule destabilization could be the mechanism behind the decreased sensitivity to paclitaxel, which is known to stabilize microtubules. Conversely, the use of a small molecule inhibitor selective against ILK, QLT-0267, resulted in suppressed microtubule dynamics, demonstrating a new mechanism of action for this compound. We further show that treatment of HeLa cells with QLT-0267 resulted in higher inter-centromere tension in aligned chromosomes during mitosis, slower microtubule regrowth after cold depolymerization and the presence of a more stable population of spindle microtubules. These results demonstrate that ILK regulates microtubule dynamics in both interphase and mitotic cells.

  15. Microtubule-binding agents: a dynamic field of cancer therapeutics

    OpenAIRE

    Dumontet, Charles; Jordan, Mary Ann

    2010-01-01

    International audience Microtubules are dynamic filamentous cytoskeletal proteins composed of tubulin and are an important therapeutic target in tumour cells. Agents that bind to microtubules have been part of the pharmacopoeia of anticancer therapy for decades and until the advent of targeted therapy, microtubules were the only alternative to DNA as a therapeutic target in cancer. The screening of a range of botanical species and marine organisms has yielded promising new antitubulin agen...

  16. Leading at the Front: How EB Proteins Regulate Microtubule Dynamics

    Science.gov (United States)

    Hawkins, Taviare

    2012-02-01

    Microtubules are the most rigid of the cytoskeletal filaments, they provide the cell's scaffolding, form the byways on which motor proteins transport intracellular cargo and reorganize to form the mitotic spindle when the cell needs to divide. These biopolymers are composed of alpha and beta tubulin monomers that create hollow cylindrical nanotubes with an outer diameter of 25 nm and an inner diameter of 17 nm. At steady state concentrations, microtubules undergo a process known as dynamic instability. During dynamic instability the length of individual microtubules is changing as the filament alternates between periods of growth to shrinkage (catastrophe) and shrinkage to growth (rescue). This process can be enhanced or diminished with the addition of microtubule associated proteins (MAPs). MAPs are microtubule binding proteins that stabilize, destabilize, or nucleate microtubules. We will discuss the effects of the stabilizing end-binding proteins (EB1, EB2 and EB3), on microtubule dynamics observed in vitro. The EBs are a unique family of MAPs known to tip track and enhance microtubule growth by stabilizing the ends. This is a different mechanism than those employed by structural MAPs such as tau or MAP4.

  17. The Role of Molecular Microtubule Motors and the Microtubule Cytoskeleton in Stress Granule Dynamics

    Directory of Open Access Journals (Sweden)

    Kristen M. Bartoli

    2011-01-01

    Full Text Available Stress granules (SGs are cytoplasmic foci that appear in cells exposed to stress-induced translational inhibition. SGs function as a triage center, where mRNAs are sorted for storage, degradation, and translation reinitiation. The underlying mechanisms of SGs dynamics are still being characterized, although many key players have been identified. The main components of SGs are stalled 48S preinitiation complexes. To date, many other proteins have also been found to localize in SGs and are hypothesized to function in SG dynamics. Most recently, the microtubule cytoskeleton and associated motor proteins have been demonstrated to function in SG dynamics. In this paper, we will discuss current literature examining the function of microtubules and the molecular microtubule motors in SG assembly, coalescence, movement, composition, organization, and disassembly.

  18. Nonlinear dynamics of C-terminal tails in cellular microtubules.

    Science.gov (United States)

    Sekulic, Dalibor L; Sataric, Bogdan M; Zdravkovic, Slobodan; Bugay, Aleksandr N; Sataric, Miljko V

    2016-07-01

    The mechanical and electrical properties, and information processing capabilities of microtubules are the permanent subject of interest for carrying out experiments in vitro and in silico, as well as for theoretical attempts to elucidate the underlying processes. In this paper, we developed a new model of the mechano-electrical waves elicited in the rows of very flexible C-terminal tails which decorate the outer surface of each microtubule. The fact that C-terminal tails play very diverse roles in many cellular functions, such as recruitment of motor proteins and microtubule-associated proteins, motivated us to consider their collective dynamics as the source of localized waves aimed for communication between microtubule and associated proteins. Our approach is based on the ferroelectric liquid crystal model and it leads to the effective asymmetric double-well potential which brings about the conditions for the appearance of kink-waves conducted by intrinsic electric fields embedded in microtubules. These kinks can serve as the signals for control and regulation of intracellular traffic along microtubules performed by processive motions of motor proteins, primarly from kinesin and dynein families. On the other hand, they can be precursors for initiation of dynamical instability of microtubules by recruiting the proper proteins responsible for the depolymerization process. PMID:27475079

  19. Modeling the Effects of Drug Binding on the Dynamic Instability of Microtubules

    CERN Document Server

    Hinow, Peter; Lopus, Manu; Jordan, Mary Ann; Tuszynski, Jack A

    2010-01-01

    We propose a stochastic model that accounts for the growth, catastrophe and rescue processes of steady state microtubules assembled from MAP-free tubulin. Both experimentally and theoretically we study the perturbation of microtubule dynamic instability by S-methyl-D-DM1, a synthetic derivative of the microtubule-targeted agent maytansine and a potential anticancer agent. We find that to be an effective suppressor of microtubule dynamics a drug must primarily suppress the loss of GDP tubulin from the microtubule tip.

  20. Ibuprofen regulation of microtubule dynamics in cystic fibrosis epithelial cells.

    Science.gov (United States)

    Rymut, Sharon M; Kampman, Claire M; Corey, Deborah A; Endres, Tori; Cotton, Calvin U; Kelley, Thomas J

    2016-08-01

    High-dose ibuprofen, an effective anti-inflammatory therapy for the treatment of cystic fibrosis (CF), has been shown to preserve lung function in a pediatric population. Despite its efficacy, few patients receive ibuprofen treatment due to potential renal and gastrointestinal toxicity. The mechanism of ibuprofen efficacy is also unclear. We have previously demonstrated that CF microtubules are slower to reform after depolymerization compared with respective wild-type controls. Slower microtubule dynamics in CF cells are responsible for impaired intracellular transport and are related to inflammatory signaling. Here, it is identified that high-dose ibuprofen treatment in both CF cell models and primary CF nasal epithelial cells restores microtubule reformation rates to wild-type levels, as well as induce extension of microtubules to the cell periphery. Ibuprofen treatment also restores microtubule-dependent intracellular transport monitored by measuring intracellular cholesterol transport. These effects are specific to ibuprofen as other cyclooxygenase inhibitors have no effect on these measures. Effects of ibuprofen are mimicked by stimulation of AMPK and blocked by the AMPK inhibitor compound C. We conclude that high-dose ibuprofen treatment enhances microtubule formation in CF cells likely through an AMPK-related pathway. These findings define a potential mechanism to explain the efficacy of ibuprofen therapy in CF. PMID:27317686

  1. A Metastable Intermediate State of Microtubule Dynamic Instability That Differs Significantly between Plus and Minus Ends

    OpenAIRE

    Tran, P.T.; Walker, R A; Salmon, E. D.

    1997-01-01

    The current two-state GTP cap model of microtubule dynamic instability proposes that a terminal crown of GTP-tubulin stabilizes the microtubule lattice and promotes elongation while loss of this GTP-tubulin cap converts the microtubule end to shortening. However, when this model was directly tested by using a UV microbeam to sever axoneme-nucleated microtubules and thereby remove the microtubule's GTP cap, severed plus ends rapidly shortened, but severed minus ends immediately resumed elongat...

  2. Nonlinear Dynamics of Dipoles in Microtubules: Pseudo-Spin Model

    CERN Document Server

    Nesterov, Alexander I; Berman, Gennady P; Mavromatos, Nick E

    2016-01-01

    We perform a theoretical study of the dynamics of the electric field excitations in a microtubule by taking into consideration the realistic cylindrical geometry, dipole-dipole interactions of the tubulin-based protein heterodimers, the radial electric field produced by the solvent, and a possible degeneracy of energy states of individual heterodimers. The consideration is done in the frames of the classical pseudo-spin model. We derive the system of nonlinear dynamical ordinary differential equations of motion for interacting dipoles, and the continuum version of these equations. We obtain the solutions of these equations in the form of snoidal waves, solitons, kinks, and localized spikes. Our results will help to a better understanding of the functional properties of microtubules including the motor protein dynamics and the information transfer processes. Our considerations are based on classical dynamics. Some speculations on the role of possible quantum effects are also made.

  3. The Aster code; Code Aster

    Energy Technology Data Exchange (ETDEWEB)

    Delbecq, J.M

    1999-07-01

    The Aster code is a 2D or 3D finite-element calculation code for structures developed by the R and D direction of Electricite de France (EdF). This dossier presents a complete overview of the characteristics and uses of the Aster code: introduction of version 4; the context of Aster (organisation of the code development, versions, systems and interfaces, development tools, quality assurance, independent validation); static mechanics (linear thermo-elasticity, Euler buckling, cables, Zarka-Casier method); non-linear mechanics (materials behaviour, big deformations, specific loads, unloading and loss of load proportionality indicators, global algorithm, contact and friction); rupture mechanics (G energy restitution level, restitution level in thermo-elasto-plasticity, 3D local energy restitution level, KI and KII stress intensity factors, calculation of limit loads for structures), specific treatments (fatigue, rupture, wear, error estimation); meshes and models (mesh generation, modeling, loads and boundary conditions, links between different modeling processes, resolution of linear systems, display of results etc..); vibration mechanics (modal and harmonic analysis, dynamics with shocks, direct transient dynamics, seismic analysis and aleatory dynamics, non-linear dynamics, dynamical sub-structuring); fluid-structure interactions (internal acoustics, mass, rigidity and damping); linear and non-linear thermal analysis; steels and metal industry (structure transformations); coupled problems (internal chaining, internal thermo-hydro-mechanical coupling, chaining with other codes); products and services. (J.S.)

  4. ASTER Paris

    Science.gov (United States)

    2000-01-01

    instrument and the data products. Dr. Anne Kahle at NASA's Jet Propulsion Laboratory, Pasadena, California, is the U.S. science team leader; Moshe Pniel of JPL is the project manager. ASTER is the only high-resolution imaging sensor on Terra. The primary goal of the ASTER mission is to obtain high-resolution image data in 14 channels over the entire land surface, as well as black and white stereo images. With revisit time of between 4 and 16 days, ASTER will provide the capability for repeat coverage of changing areas on Earth's surface.The broad spectral coverage and high spectral resolution of ASTER will provide scientists in numerous disciplines with critical information for surface mapping and monitoring dynamic conditions and temporal change. Examples of applications include monitoring glacial advances and retreats, potentially active volcanoes, thermal pollution, and coral reef degradation; identifying crop stress; determining cloud morphology and physical properties; evaluating wetlands; mapping surface temperature of soils and geology; and measuring surface heat balance.

  5. Modeling the effects of drug binding on the dynamic instability of microtubules

    International Nuclear Information System (INIS)

    We propose a stochastic model that accounts for the growth, catastrophe and rescue processes of steady-state microtubules assembled from MAP-free tubulin in the possible presence of a microtubule-associated drug. As an example of the latter, we both experimentally and theoretically study the perturbation of microtubule dynamic instability by S-methyl-D-DM1, a synthetic derivative of the microtubule-targeted agent maytansine and a potential anticancer agent. Our model predicts that among the drugs that act locally at the microtubule tip, primary inhibition of the loss of GDP tubulin results in stronger damping of microtubule dynamics than inhibition of GTP tubulin addition. On the other hand, drugs whose action occurs in the interior of the microtubule need to be present in much higher concentrations to have visible effects

  6. ASTER Dunes

    Science.gov (United States)

    2000-01-01

    This image of Saudi Arabia shows a great sea of linear dunes in part of the Rub' al Khali, or the Empty Quarter. Acquired on June 25, 2000, the image covers an area 37 kilometers (23 miles) wide and 28 kilometers (17 miles) long in three bands of the reflected visible and infrared wavelength region. The dunes are yellow due to the presence of iron oxide minerals. The inter-dune area is made up of clays and silt and appears blue due to its high reflectance in band 1. The Rub' al Khali is the world's largest continuous sand desert. It covers about 650,000 square kilometers (250,966 square miles) and lies mainly in southern Saudi Arabia, though it does extend into the United Arab Emirates, Oman, and Yemen. One of the world's driest areas, it is uninhabited except for the Bedouin nomads who cross it. The first European to travel through the desert was Bertram Thomas in 1930.Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) is one of five Earth-observing instruments launched December 18, 1999, on NASA's Terra satellite. The instrument was built by Japan's Ministry of International Trade and Industry. A joint U.S./Japan science team is responsible for validation and calibration of the instrument and the data products. Dr. Anne Kahle at NASA's Jet Propulsion Laboratory, Pasadena, California, is the U.S. science team leader; Moshe Pniel of JPL is the project manager. ASTER is the only high-resolution imaging sensor on Terra. The primary goal of the ASTER mission is to obtain high-resolution image data in 14 channels over the entire land surface, as well as black and white stereo images. With revisit time of between 4 and 16 days, ASTER will provide the capability for repeat coverage of changing areas on Earth's surface.The broad spectral coverage and high spectral resolution of ASTER will provide scientists in numerous disciplines with critical information for surface mapping and monitoring dynamic conditions and temporal change. Examples of

  7. Inhibition of microtubule dynamics impedes repair of kidney ischemia/reperfusion injury and increases fibrosis.

    Science.gov (United States)

    Han, Sang Jun; Kim, Ji-Hyeon; Kim, Jee In; Park, Kwon Moo

    2016-01-01

    The microtubule cytoskeleton is composed of α-tubulin and β-tubulin heterodimers, and it serves to regulate the shape, motility, and division of a cell. Post-translational modifications including acetylation are closely associated with the functional aspects of the microtubule, involving in a number of pathological diseases. However, the role of microtubule acetylation in acute kidney injury (AKI) and progression of AKI to chronic kidney disease have yet to be understood. In this study, ischemia/reperfusion (I/R), a major cause of AKI, resulted in deacetylation of the microtubules with a decrease in α-tubulin acetyltransferase 1 (α-TAT1). Paclitaxel (taxol), an agent that stabilizes microtubules by tubulin acetylation, treatment during the recovery phase following I/R injury inhibited tubular cell proliferation, impaired renal functional recovery, and worsened fibrosis. Taxol induced α-tubulin acetylation and post-I/R cell cycle arrest. Taxol aggregated the microtubule in the cytoplasm, resulting in suppression of microtubule dynamics. Our studies have demonstrated for the first time that I/R induced deacetylation of the microtubules, and that inhibition of microtubule dynamics retarded repair of injured tubular epithelial cells leading to an acceleration of fibrosis. This suggests that microtubule dynamics plays an important role in the processes of repair and fibrosis after AKI. PMID:27270990

  8. Contributions of microtubule dynamic instability and rotational diffusion to kinetochore capture

    CERN Document Server

    Blackwell, Robert; Edelmaier, Christopher; Gergely, Zachary R; Flynn, Patrick J; Montes, Salvador; Crapo, Ammon; Doostan, Alireza; McIntosh, J Richard; Glaser, Matthew A; Betterton, Meredith D

    2016-01-01

    Microtubule dynamic instability allows search and capture of kinetochores during spindle formation, an important process for accurate chromosome segregation during cell division. Recent work has found that microtubule rotational diffusion about minus-end attachment points contributes to kinetochore capture in fission yeast, but the relative contributions of dynamic instability and rotational diffusion are not well understood. We have developed a biophysical model of kinetochore capture in small fission-yeast nuclei using hybrid Brownian dynamics/kinetic Monte Carlo simulation techniques. With this model, we have studied the importance of dynamic instability and microtubule rotational diffusion for kinetochore capture, both to the lateral surface of a microtubule and at or near its end. Over a range of biologically relevant parameters, microtubule rotational diffusion decreased capture time, but made a relatively small contribution compared to dynamic instability. At most, rotational diffusion reduced capture ...

  9. Dynamic Behavior of Microtubules during Dynein-dependent Nuclear Migrations of Meiotic Prophase in Fission Yeast

    OpenAIRE

    Yamamoto, Ayumu; Tsutsumi, Chihiro; Kojima, Hiroaki; Oiwa, Kazuhiro; Hiraoka, Yasushi

    2001-01-01

    During meiotic prophase in fission yeast, the nucleus migrates back and forth between the two ends of the cell, led by the spindle pole body (SPB). This nuclear oscillation is dependent on astral microtubules radiating from the SPB and a microtubule motor, cytoplasmic dynein. Here we have examined the dynamic behavior of astral microtubules labeled with the green fluorescent protein during meiotic prophase with the use of optical sectioning microscopy. During nuclear migrations, the SPB mostl...

  10. Steering microtubule shuttle transport with dynamically controlled magnetic fields

    Science.gov (United States)

    Mahajan, K. D.; Ruan, G.; Dorcéna, C. J.; Vieira, G.; Nabar, G.; Bouxsein, N. F.; Chalmers, J. J.; Bachand, G. D.; Sooryakumar, R.; Winter, J. O.

    2016-04-01

    Nanoscale control of matter is critical to the design of integrated nanosystems. Here, we describe a method to dynamically control directionality of microtubule (MT) motion using programmable magnetic fields. MTs are combined with magnetic quantum dots (i.e., MagDots) that are manipulated by external magnetic fields provided by magnetic nanowires. MT shuttles thus undergo both ATP-driven and externally-directed motion with a fluorescence component that permits simultaneous visualization of shuttle motion. This technology is used to alter the trajectory of MTs in motion and to pin MT motion. Such an approach could be used to evaluate the MT-kinesin transport system and could serve as the basis for improved lab-on-a-chip technologies based on MT transport.Nanoscale control of matter is critical to the design of integrated nanosystems. Here, we describe a method to dynamically control directionality of microtubule (MT) motion using programmable magnetic fields. MTs are combined with magnetic quantum dots (i.e., MagDots) that are manipulated by external magnetic fields provided by magnetic nanowires. MT shuttles thus undergo both ATP-driven and externally-directed motion with a fluorescence component that permits simultaneous visualization of shuttle motion. This technology is used to alter the trajectory of MTs in motion and to pin MT motion. Such an approach could be used to evaluate the MT-kinesin transport system and could serve as the basis for improved lab-on-a-chip technologies based on MT transport. Electronic supplementary information (ESI) available. See DOI: 10.1039/c5nr08529b

  11. Ipl1/Aurora-dependent phosphorylation of Sli15/INCENP regulates CPC–spindle interaction to ensure proper microtubule dynamics

    OpenAIRE

    Nakajima, Yuko; Cormier, Anthony; Tyers, Randall G.; Pigula, Adrianne; Peng, Yutian; Drubin, David G; Barnes, Georjana

    2011-01-01

    Dynamic microtubules facilitate chromosome arrangement before anaphase, whereas during anaphase microtubule stability assists chromosome separation. Changes in microtubule dynamics at the metaphase–anaphase transition are regulated by Cdk1. Cdk1-mediated phosphorylation of Sli15/INCENP promotes preanaphase microtubule dynamics by preventing chromosomal passenger complex (CPC; Sli15/INCENP, Bir1/Survivin, Nbl1/Borealin, Ipl1/Aurora) association with spindles. However, whether Cdk1 has sole con...

  12. Paired arrangement of kinetochores together with microtubule pivoting and dynamics drive kinetochore capture in meiosis I.

    Science.gov (United States)

    Cojoc, Gheorghe; Florescu, Ana-Maria; Krull, Alexander; Klemm, Anna H; Pavin, Nenad; Jülicher, Frank; Tolić, Iva M

    2016-01-01

    Kinetochores are protein complexes on the chromosomes, whose function as linkers between spindle microtubules and chromosomes is crucial for proper cell division. The mechanisms that facilitate kinetochore capture by microtubules are still unclear. In the present study, we combine experiments and theory to explore the mechanisms of kinetochore capture at the onset of meiosis I in fission yeast. We show that kinetochores on homologous chromosomes move together, microtubules are dynamic and pivot around the spindle pole, and the average capture time is 3-4 minutes. Our theory describes paired kinetochores on homologous chromosomes as a single object, as well as angular movement of microtubules and their dynamics. For the experimentally measured parameters, the model reproduces the measured capture kinetics and shows that the paired configuration of kinetochores accelerates capture, whereas microtubule pivoting and dynamics have a smaller contribution. Kinetochore pairing may be a general feature that increases capture efficiency in meiotic cells. PMID:27166749

  13. Important factors determining the nanoscale tracking precision of dynamic microtubule ends.

    Science.gov (United States)

    Bohner, G; Gustafsson, N; Cade, N I; Maurer, S P; Griffin, L D; Surrey, T

    2016-01-01

    Tracking dynamic microtubule ends in fluorescence microscopy movies provides insight into the statistical properties of microtubule dynamics and is vital for further analysis that requires knowledge of the trajectories of the microtubule ends. Here we analyse the performance of a previously developed automated microtubule end tracking routine; this has been optimized for comparatively low signal-to-noise image sequences that are characteristic of microscopy movies of dynamic microtubules growing in vitro. Sequences of simulated microtubule images were generated assuming a variety of different experimental conditions. The simulated movies were then tracked and the tracking errors were characterized. We found that the growth characteristics of the microtubules within realistic ranges had a negligible effect on the tracking precision. The fluorophore labelling density, the pixel size of the images, and the exposure times were found to be important parameters limiting the tracking precision which could be explained using concepts of single molecule localization microscopy. The signal-to-noise ratio was found to be a good single predictor of the tracking precision: typical experimental signal-to-noise ratios lead to tracking precisions in the range of tens of nanometres, making the tracking program described here a useful tool for dynamic microtubule end tracking with close to molecular precision. PMID:26444439

  14. Dynamic organization of microtubules and microtubule-organizing centers during the sexual phase of a parasitic protozoan, Lecudina tuzetae (Gregarine, Apicomplexa).

    Science.gov (United States)

    Kuriyama, Ryoko; Besse, Colette; Gèze, Marc; Omoto, Charlotte K; Schrével, Joseph

    2005-12-01

    Lecudina tuzetae is a parasitic protozoan (Gregarine, Apicomplexa) living in the intestine of a marine polychaete annelid, Nereis diversicolor. Using electron and fluorescence microscopy, we have characterized the dynamic changes in microtubule organization during the sexual phase of the life cycle. The gametocyst excreted from the host worm into seawater consists of two (one male and one female) gamonts in which cortical microtubule arrays are discernible. Each gamont undergoes multiple nuclear divisions without cytokinesis, resulting in the formation of large multinucleate haploid cells. After cellularization, approximately 1000 individual gametes are produced from each gamont within 24 h. Female gametes are spherical and contain interphase cytoplasmic microtubule arrays emanating from a gamma-tubulin-containing site. In male gametes, both interphase microtubules and a flagellum with "6 + 0" axonemal microtubules extend from the same microtubule-organizing site. At the beginning of spore formation, each zygote secretes a wall to form a sporocyst. Following meiotic and mitotic divisions, each sporocyst gives rise to eight haploid cells that ultimately differentiate into sporozoites. The ovoid shaped sporocyst is asymmetric and forms at least two distinctive microtubule arrays: spindle microtubules and microtubule bundles originating from the protruding apical end corresponding to the dehiscence pole of the sporocyst. Because antibodies raised against mammalian centrosome components, such as gamma-tubulin, pericentrin, Cep135, and mitosis-specific phosphoproteins, react strongly with the microtubule-nucleating sites of Lecudina, this protozoan is likely to share common centrosomal antigens with higher eukaryotes. PMID:16240430

  15. Dynamic microtubules regulate dendritic spine morphology and synaptic plasticity

    NARCIS (Netherlands)

    J. Jaworski; L.C. Kapitein; S. Montenegro Gouveia; B.R. Dortland; P.S. Wulf; I. Grigoriev; P. Camera; S.A. Spangler; P. Di Stefano; J. Demmers; H. Krugers; P. Defilippi; A. Akhmanova; C.C. Hoogenraad

    2009-01-01

    Dendritic spines are the major sites of excitatory synaptic input, and their morphological changes have been linked to learning and memory processes. Here, we report that growing microtubule plus ends decorated by the microtubule tip-tracking protein EB3 enter spines and can modulate spine morpholog

  16. Microtubule Dynamics and Oscillating State for Mitotic Spindle

    CERN Document Server

    Rashid-Shomali, Safura

    2010-01-01

    We present a physical mechanism that can cause the mitotic spindle to oscillate. The driving force for this mechanism emerges from the polymerization of astral microtubules interacting with the cell cortex. We show that Brownian ratchet model for growing microtubules reaching the cell cortex, mediate an effective mass to the spindle body and therefore force it to oscillate. We compare the predictions of this mechanism with the previous mechanisms which were based on the effects of motor proteins. Finally we combine the effects of microtubules polymerization and motor proteins, and present the detailed phase diagram for possible oscillating states.

  17. Mechanochemical modeling of dynamic microtubule growth involving sheet-to-tube transition

    CERN Document Server

    Ji, Xiang-Ying

    2011-01-01

    Microtubule dynamics is largely influenced by nucleotide hydrolysis and the resultant tubulin configuration changes. The GTP cap model has been proposed to interpret the stabilizing mechanism of microtubule growth from the view of hydrolysis effects. Besides, the microtubule growth involves the closure of a curved sheet at its growing end. The curvature conversion also helps to stabilize the successive growth, and the curved sheet is referred to as the conformational cap. However, there still lacks theoretical investigation on the mechanical-chemical coupling growth process of microtubules. In this paper, we study the growth mechanisms of microtubules by using a coarse-grained molecular method. Firstly, the closure process involving a sheet-to-tube transition is simulated. The results verify the stabilizing effect of the sheet structure, and the minimum conformational cap length that can stabilize the growth is demonstrated to be two dimers. Then, we show that the conformational cap can function independently...

  18. The kinesin-13 KLP10A motor regulates oocyte spindle length and affects EB1 binding without altering microtubule growth rates

    Directory of Open Access Journals (Sweden)

    Kevin K. Do

    2014-06-01

    Full Text Available Kinesin-13 motors are unusual in that they do not walk along microtubules, but instead diffuse to the ends, where they remove tubulin dimers, regulating microtubule dynamics. Here we show that Drosophila kinesin-13 klp10A regulates oocyte meiosis I spindle length and is haplo-insufficient – KLP10A, reduced by RNAi or a loss-of-function P element insertion mutant, results in elongated and mispositioned oocyte spindles, and abnormal cortical microtubule asters and aggregates. KLP10A knockdown by RNAi does not significantly affect microtubule growth rates in oocyte spindles, but, unexpectedly, EB1 binding and unbinding are slowed, suggesting a previously unobserved role for kinesin-13 in mediating EB1 binding interactions with microtubules. Kinesin-13 may regulate spindle length both by disassembling subunits from microtubule ends and facilitating EB1 binding to plus ends. We also observe an increased number of paused microtubules in klp10A RNAi knockdown spindles, consistent with a reduced frequency of microtubule catastrophes. Overall, our findings indicate that reduced kinesin-13 decreases microtubule disassembly rates and affects EB1 interactions with microtubules, rather than altering microtubule growth rates, causing spindles to elongate and abnormal cortical microtubule asters and aggregates to form.

  19. Dietary flavonoid fisetin binds to β-tubulin and disrupts microtubule dynamics in prostate cancer cells.

    Science.gov (United States)

    Mukhtar, Eiman; Adhami, Vaqar Mustafa; Sechi, Mario; Mukhtar, Hasan

    2015-10-28

    Microtubule targeting based therapies have revolutionized cancer treatment; however, resistance and side effects remain a major limitation. Therefore, novel strategies that can overcome these limitations are urgently needed. We made a novel discovery that fisetin, a hydroxyflavone, is a microtubule stabilizing agent. Fisetin binds to tubulin and stabilizes microtubules with binding characteristics far superior than paclitaxel. Surface plasmon resonance and computational docking studies suggested that fisetin binds to β-tubulin with superior affinity compared to paclitaxel. Fisetin treatment of human prostate cancer cells resulted in robust up-regulation of microtubule associated proteins (MAP)-2 and -4. In addition, fisetin treated cells were enriched in α-tubulin acetylation, an indication of stabilization of microtubules. Fisetin significantly inhibited PCa cell proliferation, migration, and invasion. Nudc, a protein associated with microtubule motor dynein/dynactin complex that regulates microtubule dynamics, was inhibited with fisetin treatment. Further, fisetin treatment of a P-glycoprotein overexpressing multidrug-resistant cancer cell line NCI/ADR-RES inhibited the viability and colony formation. Our results offer in vitro proof-of-concept for fisetin as a microtubule targeting agent. We suggest that fisetin could be developed as an adjuvant for treatment of prostate and other cancer types. PMID:26235140

  20. Dictyoceratidan poisons: Defined mark on microtubule-tubulin dynamics.

    Science.gov (United States)

    Gnanambal K, Mary Elizabeth; Lakshmipathy, Shailaja Vommi

    2016-03-01

    Tubulin/microtubule assembly and disassembly is characterized as one of the chief processes during cell growth and division. Hence drugs those perturb these process are considered to be effective in killing fast multiplying cancer cells. There is a collection of natural compounds which disturb microtubule/tubulin dis/assemblage and there have been a lot of efforts concerted in the marine realm too, to surveying such killer molecules. Close to half the natural compounds shooting out from marine invertebrates are generally with no traceable definite mechanisms of action though may be tough anti-cancerous hits at nanogram levels, hence fatefully those discoveries conclude therein without a capacity of translation from laboratory to pharmacy. Astoundingly at least 50% of natural compounds which have definite mechanisms of action causing disorders in tubulin/microtubule kinetics have an isolation history from sponges belonging to the Phylum: Porifera. Poriferans have always been a wonder worker to treat cancers with a choice of, yet precise targets on cancerous tissues. There is a specific order: Dictyoceratida within this Phylum which has contributed to yielding at least 50% of effective compounds possessing this unique mechanism of action mentioned above. However, not much notice is driven to Dictyoceratidans alongside the order: Demospongiae thus dictating the need to know its select microtubule/tubulin irritants since the unearthing of avarol in the year 1974 till date. Hence this review selectively pinpoints all the compounds, noteworthy derivatives and analogs stemming from order: Dictyoceratida focusing on the past, present and future. PMID:26874035

  1. A polarised population of dynamic microtubules mediates homeostatic length control in animal cells.

    Directory of Open Access Journals (Sweden)

    Remigio Picone

    Full Text Available Because physical form and function are intimately linked, mechanisms that maintain cell shape and size within strict limits are likely to be important for a wide variety of biological processes. However, while intrinsic controls have been found to contribute to the relatively well-defined shape of bacteria and yeast cells, the extent to which individual cells from a multicellular animal control their plastic form remains unclear. Here, using micropatterned lines to limit cell extension to one dimension, we show that cells spread to a characteristic steady-state length that is independent of cell size, pattern width, and cortical actin. Instead, homeostatic length control on lines depends on a population of dynamic microtubules that lead during cell extension, and that are aligned along the long cell axis as the result of interactions of microtubule plus ends with the lateral cell cortex. Similarly, during the development of the zebrafish neural tube, elongated neuroepithelial cells maintain a relatively well-defined length that is independent of cell size but dependent upon oriented microtubules. A simple, quantitative model of cellular extension driven by microtubules recapitulates cell elongation on lines, the steady-state distribution of microtubules, and cell length homeostasis, and predicts the effects of microtubule inhibitors on cell length. Together this experimental and theoretical analysis suggests that microtubule dynamics impose unexpected limits on cell geometry that enable cells to regulate their length. Since cells are the building blocks and architects of tissue morphogenesis, such intrinsically defined limits may be important for development and homeostasis in multicellular organisms.

  2. KATNAL1 regulation of sertoli cell microtubule dynamics is essential for spermiogenesis and male fertility.

    Directory of Open Access Journals (Sweden)

    Lee B Smith

    Full Text Available Spermatogenesis is a complex process reliant upon interactions between germ cells (GC and supporting somatic cells. Testicular Sertoli cells (SC support GCs during maturation through physical attachment, the provision of nutrients, and protection from immunological attack. This role is facilitated by an active cytoskeleton of parallel microtubule arrays that permit transport of nutrients to GCs, as well as translocation of spermatids through the seminiferous epithelium during maturation. It is well established that chemical perturbation of SC microtubule remodelling leads to premature GC exfoliation demonstrating that microtubule remodelling is an essential component of male fertility, yet the genes responsible for this process remain unknown. Using a random ENU mutagenesis approach, we have identified a novel mouse line displaying male-specific infertility, due to a point mutation in the highly conserved ATPase domain of the novel KATANIN p60-related microtubule severing protein Katanin p60 subunit A-like1 (KATNAL1. We demonstrate that Katnal1 is expressed in testicular Sertoli cells (SC from 15.5 days post-coitum (dpc and that, consistent with chemical disruption models, loss of function of KATNAL1 leads to male-specific infertility through disruption of SC microtubule dynamics and premature exfoliation of spermatids from the seminiferous epithelium. The identification of KATNAL1 as an essential regulator of male fertility provides a significant novel entry point into advancing our understanding of how SC microtubule dynamics promotes male fertility. Such information will have resonance both for future treatment of male fertility and the development of non-hormonal male contraceptives.

  3. The Aster code

    International Nuclear Information System (INIS)

    The Aster code is a 2D or 3D finite-element calculation code for structures developed by the R and D direction of Electricite de France (EdF). This dossier presents a complete overview of the characteristics and uses of the Aster code: introduction of version 4; the context of Aster (organisation of the code development, versions, systems and interfaces, development tools, quality assurance, independent validation); static mechanics (linear thermo-elasticity, Euler buckling, cables, Zarka-Casier method); non-linear mechanics (materials behaviour, big deformations, specific loads, unloading and loss of load proportionality indicators, global algorithm, contact and friction); rupture mechanics (G energy restitution level, restitution level in thermo-elasto-plasticity, 3D local energy restitution level, KI and KII stress intensity factors, calculation of limit loads for structures), specific treatments (fatigue, rupture, wear, error estimation); meshes and models (mesh generation, modeling, loads and boundary conditions, links between different modeling processes, resolution of linear systems, display of results etc..); vibration mechanics (modal and harmonic analysis, dynamics with shocks, direct transient dynamics, seismic analysis and aleatory dynamics, non-linear dynamics, dynamical sub-structuring); fluid-structure interactions (internal acoustics, mass, rigidity and damping); linear and non-linear thermal analysis; steels and metal industry (structure transformations); coupled problems (internal chaining, internal thermo-hydro-mechanical coupling, chaining with other codes); products and services. (J.S.)

  4. Titanium dioxide nanoparticles alter cellular morphology via disturbing the microtubule dynamics

    Science.gov (United States)

    Mao, Zhilei; Xu, Bo; Ji, Xiaoli; Zhou, Kun; Zhang, Xuemei; Chen, Minjian; Han, Xiumei; Tang, Qiusha; Wang, Xinru; Xia, Yankai

    2015-04-01

    Titanium dioxide (TiO2) nanoparticles (NPs) have been widely used in our daily lives, for example, in the areas of sunscreens, cosmetics, toothpastes, food products, and nanomedical reagents. Recently, increasing concern has been raised about their neurotoxicity, but the mechanisms underlying such toxic effects are still unknown. In this work, we employed a human neuroblastoma cell line (SH-SY5Y) to study the effects of TiO2 NPs on neurological systems. Our results showed that TiO2 NPs did not affect cell viability but induced noticeable morphological changes until 100 μg ml-1. Immunofluorescence detection showed disorder, disruption, retraction, and decreased intensity of the microtubules after TiO2 NPs treatment. Both α and β tubule expressions did not change in the TiO2 NP-treated group, but the percentage of soluble tubules was increased. A microtubule dynamic study in living cells indicated that TiO2 NPs caused a lower growth rate and a higher shortening rate of microtubules as well as shortened lifetimes of de novo microtubules. TiO2 NPs did not cause changes in the expression and phosphorylation state of tau proteins, but a tau-TiO2 NP interaction was observed. TiO2 NPs could interact with tubule heterodimers, microtubules and tau proteins, which led to the instability of microtubules, thus contributing to the neurotoxicity of TiO2 NPs.Titanium dioxide (TiO2) nanoparticles (NPs) have been widely used in our daily lives, for example, in the areas of sunscreens, cosmetics, toothpastes, food products, and nanomedical reagents. Recently, increasing concern has been raised about their neurotoxicity, but the mechanisms underlying such toxic effects are still unknown. In this work, we employed a human neuroblastoma cell line (SH-SY5Y) to study the effects of TiO2 NPs on neurological systems. Our results showed that TiO2 NPs did not affect cell viability but induced noticeable morphological changes until 100 μg ml-1. Immunofluorescence detection showed disorder

  5. Infrared dynamics of collagen, microtubules, and water: Biophysical research enabling biomedical FEL applications

    International Nuclear Information System (INIS)

    Experimental evidence is presented for FEL induced photothermal protein chemistry and FEL modulation of microtubule dynamics. These findings are discussed in terms of previous investigations of FEL tissue ablation to explore the importance of the micropulse structure of the Mark-III FEL. We propose various roles for localized heating in FEL modulation of the dynamics of biological macromolecules. Potential medical applications are described. (Copyright (c) 1998 Elsevier Science B.V., Amsterdam. All rights reserved.)

  6. Human chromokinesins promote chromosome congression and spindle microtubule dynamics during mitosis.

    Science.gov (United States)

    Wandke, Cornelia; Barisic, Marin; Sigl, Reinhard; Rauch, Veronika; Wolf, Frank; Amaro, Ana C; Tan, Chia H; Pereira, Antonio J; Kutay, Ulrike; Maiato, Helder; Meraldi, Patrick; Geley, Stephan

    2012-09-01

    Chromokinesins are microtubule plus end-directed motor proteins that bind to chromosome arms. In Xenopus egg cell-free extracts, Xkid and Xklp1 are essential for bipolar spindle formation but the functions of the human homologues, hKID (KIF22) and KIF4A, are poorly understood. By using RNAi-mediated protein knockdown in human cells, we find that only co-depletion delayed progression through mitosis in a Mad2-dependent manner. Depletion of hKID caused abnormal chromosome arm orientation, delayed chromosome congression, and sensitized cells to nocodazole. Knockdown of KIF4A increased the number and length of microtubules, altered kinetochore oscillations, and decreased kinetochore microtubule flux. These changes were associated with failures in establishing a tight metaphase plate and an increase in anaphase lagging chromosomes. Co-depletion of both chromokinesins aggravated chromosome attachment failures, which led to mitotic arrest. Thus, hKID and KIF4A contribute independently to the rapid and correct attachment of chromosomes by controlling the positioning of chromosome arms and the dynamics of microtubules, respectively. PMID:22945934

  7. X-ray fiber diffraction analysis shows dynamic changes in axial tubulin repeats in native microtubules depending on paclitaxel content, temperature and GTP-hydrolysis.

    Science.gov (United States)

    Kamimura, Shinji; Fujita, Yosuke; Wada, Yuuko; Yagi, Toshiki; Iwamoto, Hiroyuki

    2016-03-01

    Microtubules are key components of the cytoskeleton in eukaryotic cells. The dynamics between assembled microtubules and free tubulin dimers in the cytoplasm is closely related to the active shape changes of microtubule networks. One of the most fundamental questions is the association of microtubule dynamics with the molecular conformation of tubulin within microtubules. To address this issue, we applied a new technique for the rapid shear-flow alignment of biological filaments, enabling us to acquire the structural periodicity data of microtubules by X-ray fiber diffraction under various physiological conditions. We classified microtubules into three main groups on the basis of distinct axial tubulin periodicities and mean microtubule diameters that varied depending on GTP hydrolysis and the content of paclitaxel, a microtubule stabilizer. Paclitaxel induced rapid changes in tubulin axial repeats in a cooperative manner. This is the first demonstration of dynamic changes of axial tubulin repeats within native microtubules without fixation. We also found extraordinary features of negative thermal expansion of axial tubulin repeats in both paclitaxel-stabilized and GMPCPP-containing microtubules. Our results suggest that even in assembled microtubules, both GTP- and GDP-tubulin dimers can undergo dynamic conversion between at least two different states: short and long configurations. © 2016 Wiley Periodicals, Inc. PMID:26873786

  8. Mechanism of dynamic reorientation of cortical microtubules due to mechanical stress

    CERN Document Server

    Muratov, Alexander

    2015-01-01

    Directional growth caused by gravitropism and corresponding bending of plant cells has been explored since 19th century, however, many aspects of mechanisms underlying the perception of gravity at the molecular level are still not well known. Perception of gravity in root and shoot gravitropisms is usually attributed to gravisensitive cells, called statocytes, which exploit sedimentation of macroscopic and heavy organelles, amyloplasts, to sense the direction of gravity. Gravity stimulus is then transduced into distal elongation zone, which is several mm far from statocytes, where it causes stretching. It is suggested that gravity stimulus is conveyed by gradients in auxin flux. We propose a theoretical model that may explain how concentration gradients and/or stretching may indirectly affect the global orientation of cortical microtubules, attached to the cell membrane and induce their dynamic reorientation perpendicular to the gradients. In turn, oriented microtubules arrays direct the growth and orientatio...

  9. Mechanism of dynamic reorientation of cortical microtubules due to mechanical stress.

    Science.gov (United States)

    Muratov, Alexander; Baulin, Vladimir A

    2015-12-01

    Directional growth caused by gravitropism and corresponding bending of plant cells has been explored since 19th century, however, many aspects of mechanisms underlying the perception of gravity at the molecular level are still not well known. Perception of gravity in root and shoot gravitropisms is usually attributed to gravisensitive cells, called statocytes, which exploit sedimentation of macroscopic and heavy organelles, amyloplasts, to sense the direction of gravity. Gravity stimulus is then transduced into distal elongation zone, which is several mm far from statocytes, where it causes stretching. It is suggested that gravity stimulus is conveyed by gradients in auxin flux. We propose a theoretical model that may explain how concentration gradients and/or stretching may indirectly affect the global orientation of cortical microtubules, attached to the cell membrane and induce their dynamic reorientation perpendicular to the gradients. In turn, oriented microtubule arrays direct the growth and orientation of cellulose microfibrils, forming part of the cell external skeleton and determine the shape of the cell. Reorientation of microtubules is also observed in reaction to light in phototropism and mechanical bending, thus suggesting universality of the proposed mechanism. PMID:26422460

  10. Regulation of Microtubule Dynamics in Axon Regeneration: Insights from C. elegans [version 1; referees: 3 approved

    Directory of Open Access Journals (Sweden)

    Ngang Heok Tang

    2016-04-01

    Full Text Available The capacity of an axon to regenerate is regulated by its external environment and by cell-intrinsic factors. Studies in a variety of organisms suggest that alterations in axonal microtubule (MT dynamics have potent effects on axon regeneration. We review recent findings on the regulation of MT dynamics during axon regeneration, focusing on the nematode Caenorhabditis elegans. In C. elegans the dual leucine zipper kinase (DLK promotes axon regeneration, whereas the exchange factor for Arf6 (EFA-6 inhibits axon regeneration. Both DLK and EFA-6 respond to injury and control axon regeneration in part via MT dynamics. How the DLK and EFA-6 pathways are related is a topic of active investigation, as is the mechanism by which EFA-6 responds to axonal injury. We evaluate potential candidates, such as the MT affinity-regulating kinase PAR-1/MARK, in regulation of EFA-6 and axonal MT dynamics in regeneration.

  11. The linear and rotational motions of the fission yeast nucleus are governed by the stochastic dynamics of spatially distributed microtubules.

    Science.gov (United States)

    Hui, Tsz Hin; Zheng, Fan; Lin, Yuan; Fu, Chuanhai

    2016-05-01

    Dynamic nuclei are involved in a wide variety of fundamental biological processes including cell migration, cell division and fertilization. Here, we develop a mathematical model, in combination with live-cell imaging at high temporal resolution, to quantitatively elucidate how the linear and rotational motions of the nucleus are governed by the stochastic dynamics of the microtubule cytoskeleton. Our simulation and experimental results demonstrate that microtubule rescue and catastrophe frequencies are the decisive factors in regulating the nuclear movement. Lower rescue and catastrophe frequencies can lead to significantly larger angular and translational oscillations of the nucleus. In addition, our model also suggests that the stochastic dynamics of individual spatially distributed microtubules works collectively as a restoring force to maintain nuclear centering and hence ensures symmetric cell division, in excellent agreement with direct experimental observations. PMID:26921917

  12. ASTER Flyby of San Francisco

    Science.gov (United States)

    2002-01-01

    The Advanced Spaceborne Thermal Emission and Reflection radiometer, ASTER, is an international project: the instrument was supplied by Japan's Ministry of International Trade and Industry. A joint US/Japan science team developed algorithms for science data products, and is validating instrument performance. With its 14 spectral bands, extremely high spatial resolution, and 15 meter along-track stereo capability, ASTER is the zoom lens of the Terra satellite. The primary mission goals are to characterize the Earth's surface; and to monitor dynamic events and processes that influence habitability at human scales. ASTER's monitoring and mapping capabilities are illustrated by this series of images of the San Francisco area. The visible and near infrared image reveals suspended sediment in the bays, vegetation health, and details of the urban environment. Flying over San Francisco (3.2MB) (high-res (18.3MB)), we see the downtown, and shadows of the large buildings. Past the Golden Gate Bridge and Alcatraz Island, we cross San Pablo Bay and enter Suisun Bay. Turning south, we fly over the Berkeley and Oakland Hills. Large salt evaporation ponds come into view at the south end of San Francisco Bay. We turn northward, and approach San Francisco Airport. Rather than landing and ending our flight, we see this is as only the beginning of a 6 year mission to better understand the habitability of the world on which we live. For more information: ASTER images through Visible Earth ASTER Web Site Image courtesy of MITI, ERSDAC, JAROS, and the U.S./Japan ASTER Science Team

  13. The complex dynamic network of microtubule and microfilament cytasters of the leech zygote.

    Science.gov (United States)

    Cantillana, V; Urrutia, M; Ubilla, A; Fernández, J

    2000-12-01

    The organization of the cytoskeleton in the early first interphase zygote and its involvement in organelle redistribution were studied in the glossiphoniid leech Theromyzon trizonare by confocal and electron microscopy, immunofluorescence, and time-lapse video imaging after microinjection of labeled tubulin and/or actin and loading with a mitotracker. The cytoskeleton consists of an inner or endoplasmic and an outer or ectoplasmic domain. The inner domain consists of a monaster whose fibers retract from the zygote periphery by the end of the early first interphase. The outer domain is built upon a network of microtubules and microfilaments cytasters. Short pulses of microinjected labeled actin or tubulin and Taxol treatment demonstrate that cytasters are centers of microtubule and microfilament nucleation. Immunostaining with anti-centrophilin, anti-BX-63, and anti-AH-6 indicates that the network of cytasters includes centrosomal antigens. Cytasters move in an orderly fashion at speeds of 0.5-2 micrometer/min, in an energy-dependent process retarded and finally blocked by the ATP analogue AMP-PNP and high concentrations of Taxol. Colliding cytasters fuse and form larger cytoskeletal nucleation centers. The leech zygote is a highly compartmentalized cell whose cytasters function as articulated components of a very dynamic cytoskeletal system engaged in bulk transportation of organelles during ooplasmic segregation. PMID:11087633

  14. An antitubulin agent BCFMT inhibits proliferation of cancer cells and induces cell death by inhibiting microtubule dynamics.

    Directory of Open Access Journals (Sweden)

    Ankit Rai

    Full Text Available Using cell based screening assay, we identified a novel anti-tubulin agent (Z-5-((5-(4-bromo-3-chlorophenylfuran-2-ylmethylene-2-thioxothiazolidin-4-one (BCFMT that inhibited proliferation of human cervical carcinoma (HeLa (IC(50, 7.2 ± 1.8 µM, human breast adenocarcinoma (MCF-7 (IC(50, 10.0 ± 0.5 µM, highly metastatic breast adenocarcinoma (MDA-MB-231 (IC(50, 6.0 ± 1 µM, cisplatin-resistant human ovarian carcinoma (A2780-cis (IC(50, 5.8 ± 0.3 µM and multi-drug resistant mouse mammary tumor (EMT6/AR1 (IC(50, 6.5 ± 1 µM cells. Using several complimentary strategies, BCFMT was found to inhibit cancer cell proliferation at G2/M phase of the cell cycle apparently by targeting microtubules. In addition, BCFMT strongly suppressed the dynamics of individual microtubules in live MCF-7 cells. At its half maximal proliferation inhibitory concentration (10 µM, BCFMT reduced the rates of growing and shortening phases of microtubules in MCF-7 cells by 37 and 40%, respectively. Further, it increased the time microtubules spent in the pause (neither growing nor shortening detectably state by 135% and reduced the dynamicity (dimer exchange per unit time of microtubules by 70%. In vitro, BCFMT bound to tubulin with a dissociation constant of 8.3 ± 1.8 µM, inhibited tubulin assembly and suppressed GTPase activity of microtubules. BCFMT competitively inhibited the binding of BODIPY FL-vinblastine to tubulin with an inhibitory concentration (K(i of 5.2 ± 1.5 µM suggesting that it binds to tubulin at the vinblastine site. In cultured cells, BCFMT-treatment depolymerized interphase microtubules, perturbed the spindle organization and accumulated checkpoint proteins (BubR1 and Mad2 at the kinetochores. BCFMT-treated MCF-7 cells showed enhanced nuclear accumulation of p53 and its downstream p21, which consequently activated apoptosis in these cells. The results suggested that BCFMT inhibits proliferation of several types of cancer cells including drug

  15. Using Photobleaching to Measure Spindle Microtubule Dynamics in Primary Cultures of Dividing Drosophila Meiotic Spermatocytes.

    Science.gov (United States)

    Savoian, Matthew S

    2015-07-01

    In dividing animal cells, a microtubule (MT)-based bipolar spindle governs chromosome movement. Current models propose that the spindle facilitates and/or generates translocating forces by regionally depolymerizing the kinetochore fibers (k-fibers) that bind each chromosome. It is unclear how conserved these sites and the resultant chromosome-moving mechanisms are between different dividing cell types because of the technical challenges of quantitatively studying MTs in many specimens. In particular, our knowledge of MT kinetics during the sperm-producing male meiotic divisions remains in its infancy. In this study, I use an easy-to-implement photobleaching-based assay for measuring spindle MT dynamics in primary cultures of meiotic spermatocytes isolated from the fruit fly Drosophila melanogaster. By use of standard scanning confocal microscopy features, fiducial marks were photobleached on fluorescent protein (FP)-tagged MTs. These were followed by time-lapse imaging during different division stages, and their displacement rates were calculated using public domain software. I find that k-fibers continually shorten at their poles during metaphase and anaphase A through the process of MT flux. Anaphase chromosome movement is complemented by Pac-Man, the shortening of the k-fiber at its chromosomal interface. Thus, Drosophila spermatocytes share the sites of spindle dynamism and mechanisms of chromosome movement with mitotic cells. The data reveal the applicability of the photobleaching assay for measuring MT dynamics in primary cultures. This approach can be readily applied to other systems. PMID:25802491

  16. The Dynamic Pollen Tube Cytoskeleton: Live Cell Studies Using Actin-Binding and Microtubule-Binding Reporter Proteins

    Institute of Scientific and Technical Information of China (English)

    Alice Y. Cheung; Qiao-hong Duan; Silvia Santos Costa; Barend H.J.de Graaf; Veronica S.Di Stilio; Jose Feijo; Hen-Ming Wu

    2008-01-01

    Pollen tubes elongate within the pistil to transport sperm cells to the embryo sac for fertilization.Growth occurs exclusively at the tube apex,rendering pollen tube elongation a most dramatic polar cell growth process.A hall-mark pollen tube feature is its cytoskeleton,which comprises elaborately organized and dynamic actin microfilaments and microtubules.Pollen tube growth is dependent on the actin cytoskeleton;its organization and regulation have been exalined extensively by various approaches.including fluorescent protein labeled actin-binding proteins in live cell studies.Using the previously described GFP-NtADF1 and GFP-LIADF1, and a new actin reporter protein NtPLIM2b-GFP,we re-affirm that the predominant actin structures in elongating tobacco and lily pollen tubes are long,streaming actin cables along the pollen tube shank,and a subapical structure comprising shorter actin cables.The subapical collection of actin microfilaments undergoes dynamic changes,giving rise to the appearance of structures that range from basket-or funnel-shaped,mesh-like to a subtle ring.NtPLIM2b-GFP is used in combination with a guanine nucleotide exchange factor for the Rho GTPases,AtROP-GEF1,to illustrate the use of these actin reporter proteins to explore the linkage between the polar cell growth process and its actin cytoskeleton.Contrary to the actin cytoskeleton,microtubules appear not to play a direct role in supporting the polar cell growth process in angiosperm pollen tubes.Using a microtubule reporter protein based on the microtubule end-binding protein from Arabidopsis AtEB1,GFP-AtEB1,we show that the extensive microtubule network in elongating pollen tubes displays varying degrees of dynamics.These reporter proteins provide versatile tools to explore the functional connection between major structural and signaling components of the polar pollen tube growth process.

  17. Control of microtubule organization and dynamics : two ends in the limelight

    NARCIS (Netherlands)

    Akhmanova, Anna; Steinmetz, Michel O

    2015-01-01

    Microtubules have fundamental roles in many essential biological processes, including cell division and intracellular transport. They assemble and disassemble from their two ends, denoted the plus end and the minus end. Significant advances have been made in our understanding of microtubule plus-end

  18. Opportunities within ASTERICS

    Science.gov (United States)

    van der Meer, Rob; Cimò, Giuseppe

    2016-04-01

    ASTERICS, The Astronomy ESFRI and Research Infrastructure Cluster project, brings together astronomers and astroparticle physicists of 22 institutes in Europe to help Europe's world-leading observatories work together to find common solutions to their Big Data challenges, their interoperability and scheduling, and their data access, searching for cross-cutting solutions with mutual and wide-ranging benefit to all concerned. ASTERICS is a four year project, funded through the European Union's Horizon 2020 Framework Programme. The facilities supported by ASTERICS include SKA, CTA, KM3NeT, E-ELT. ASTERICS aims to open up multi messenger astronomy to all scientists and the public through the Virtual Observatory and the citizen science work. I will draw a picture of the landscape in which ASTERICS operates and the possible interaction with the Very Large Volume Neutrino Telescope community. Attention will be given to emerging opportunities for the Neutrino community and how these can be recognised or created.

  19. Opportunities within ASTERICS

    Directory of Open Access Journals (Sweden)

    Meer Rob van der

    2016-01-01

    Full Text Available ASTERICS, The Astronomy ESFRI and Research Infrastructure Cluster project, brings together astronomers and astroparticle physicists of 22 institutes in Europe to help Europe's world-leading observatories work together to find common solutions to their Big Data challenges, their interoperability and scheduling, and their data access, searching for cross-cutting solutions with mutual and wide-ranging benefit to all concerned. ASTERICS is a four year project, funded through the European Union's Horizon 2020 Framework Programme. The facilities supported by ASTERICS include SKA, CTA, KM3NeT, E-ELT. ASTERICS aims to open up multi messenger astronomy to all scientists and the public through the Virtual Observatory and the citizen science work. I will draw a picture of the landscape in which ASTERICS operates and the possible interaction with the Very Large Volume Neutrino Telescope community. Attention will be given to emerging opportunities for the Neutrino community and how these can be recognised or created.

  20. "Spiral asters" and cytoplasmic rotation in sea urchin eggs: induction in Strongylocentrotus purpuratus eggs by elevated temperature

    OpenAIRE

    1985-01-01

    "Spiral asters" composed of swirls of subcortical microtubules were recently described in fertilized eggs of the sea urchin Strongylocentrotus purpuratus. In our study, these structures did not occur at culture temperatures below 16 degrees C. When the culture temperature was elevated, however, "spiral asters" routinely appeared during a susceptible period before mitotic prophase when the sperm aster-diaster normally exists. A massive and protracted rotation of the cytoplasm (excluding an imm...

  1. Altered microtubule dynamics and vesicular transport in mouse and human MeCP2-deficient astrocytes.

    Science.gov (United States)

    Delépine, Chloé; Meziane, Hamid; Nectoux, Juliette; Opitz, Matthieu; Smith, Amos B; Ballatore, Carlo; Saillour, Yoann; Bennaceur-Griscelli, Annelise; Chang, Qiang; Williams, Emily Cunningham; Dahan, Maxime; Duboin, Aurélien; Billuart, Pierre; Herault, Yann; Bienvenu, Thierry

    2016-01-01

    Rett syndrome (RTT) is a rare X-linked neurodevelopmental disorder, characterized by normal post-natal development followed by a sudden deceleration in brain growth with progressive loss of acquired motor and language skills, stereotypic hand movements and severe cognitive impairment. Mutations in the methyl-CpG-binding protein 2 (MECP2) cause more than 95% of classic cases. Recently, it has been shown that the loss of Mecp2 from glia negatively influences neurons in a non-cell-autonomous fashion, and that in Mecp2-null mice, re-expression of Mecp2 preferentially in astrocytes significantly improved locomotion and anxiety levels, restored respiratory abnormalities to a normal pattern and greatly prolonged lifespan compared with globally null mice. We now report that microtubule (MT)-dependent vesicle transport is altered in Mecp2-deficient astrocytes from newborn Mecp2-deficient mice compared with control wild-type littermates. Similar observation has been made in human MECP2 p.Arg294* iPSC-derived astrocytes. Importantly, administration of Epothilone D, a brain-penetrant MT-stabilizing natural product, was found to restore MT dynamics in Mecp2-deficient astrocytes and in MECP2 p.Arg294* iPSC-derived astrocytes in vitro. Finally, we report that relatively low weekly doses of Epothilone D also partially reversed the impaired exploratory behavior in Mecp2(308/y) male mice. These findings represent a first step toward the validation of an innovative treatment for RTT. PMID:26604147

  2. Evidence for two distinct binding sites for tau on microtubules

    OpenAIRE

    Makrides, Victoria; Massie, Michelle R.; Feinstein, Stuart C.; Lew, John

    2004-01-01

    The microtubule-associated protein tau regulates diverse and essential microtubule functions, from the nucleation and promotion of microtubule polymerization to the regulation of microtubule polarity and dynamics, as well as the spacing and bundling of axonal microtubules. Thermodynamic studies show that tau interacts with microtubules in the low- to mid-nanomolar range, implying moderate binding affinity. At the same time, it is well established that microtubule-bound tau does not undergo ex...

  3. Microtubule dynamics of the centrosome-like polar organizers from the basal land plant Marchantia polymorpha.

    Science.gov (United States)

    Buschmann, Henrik; Holtmannspötter, Michael; Borchers, Agnes; O'Donoghue, Martin-Timothy; Zachgo, Sabine

    2016-02-01

    The liverwort Marchantia employs both modern and ancestral devices during cell division: it forms preprophase bands and in addition it shows centrosome-like polar organizers. We investigated whether polar organizers and preprophase bands cooperate to set up the division plane. To this end, two novel green fluorescent protein-based microtubule markers for dividing cells of Marchantia were developed. Cells of the apical notch formed polar organizers first and subsequently assembled preprophase bands. Polar organizers were formed de novo from multiple mobile microtubule foci localizing to the nuclear envelope. The foci then became concentrated by bipolar aggregation. We determined the comet production rate of polar organizers and show that microtubule plus ends of astral microtubules polymerize faster than those found on cortical microtubules. Importantly, it was observed that conditions increasing polar organizer numbers interfere with preprophase band formation. The data show that polar organizers have much in common with centrosomes, but that they also have specialized features. The results suggest that polar organizers contribute to preprophase band formation and in this way are involved in controlling the division plane. Our analyses of the basal land plant Marchantia shed new light on the evolution of plant cell division. PMID:26467050

  4. N-terminus-modified Hec1 suppresses tumour growth by interfering with kinetochore-microtubule dynamics.

    Science.gov (United States)

    Orticello, M; Fiore, M; Totta, P; Desideri, M; Barisic, M; Passeri, D; Lenzi, J; Rosa, A; Orlandi, A; Maiato, H; Del Bufalo, D; Degrassi, F

    2015-06-01

    Mitotic proteins are attractive targets to develop molecular cancer therapeutics due to the intimate interdependence between cell proliferation and mitosis. In this work, we have explored the therapeutic potential of the kinetochore (KT) protein Hec1 (Highly Expressed in Cancer protein 1) as a molecular target to produce massive chromosome missegregation and cell death in cancer cells. Hec1 is a constituent of the Ndc80 complex, which mediates KT-microtubule (MT) attachments at mitosis and is upregulated in various cancer types. We expressed Hec1 fused with enhanced green fluorescent protein (EGFP) at its N-terminus MT-interaction domain in HeLa cells and showed that expression of this modified Hec1, which localized at KTs, blocked cell proliferation and promoted apoptosis in tumour cells. EGFP-Hec1 was extremely potent in tumour cell killing and more efficient than siRNA-induced Hec1 depletion. In striking contrast, normal cells showed no apparent cell proliferation defects or cell death following EGFP-Hec1 expression. Live-cell imaging demonstrated that cancer cell death was associated with massive chromosome missegregation within multipolar spindles after a prolonged mitotic arrest. Moreover, EGFP-Hec1 expression was found to increase KT-MT attachment stability, providing a molecular explanation for the abnormal spindle architecture and the cytotoxic activity of this modified protein. Consistent with cell culture data, EGFP-Hec1 expression was found to strongly inhibit tumour growth in a mouse xenograft model by disrupting mitosis and inducing multipolar spindles. Taken together, these findings demonstrate that stimulation of massive chromosome segregation defects can be used as an anti-cancer strategy through the activation of mitotic catastrophe after a multipolar mitosis. Importantly, this study represents a clear proof of concept that targeting KT proteins required for proper KT-MT attachment dynamics constitutes a powerful approach in cancer therapy. PMID

  5. Microtubule dynamics and signal transduction at the immunological synapse: new partners and new connections

    OpenAIRE

    Lasserre, Rémi; Alcover, Andrés

    2012-01-01

    Antigen recognition induces T-cell polarization towards antigen presenting cells, generating the immunological synapse at the cell interface. Now, microtubule-mediated polarized vesicle transport is shown to be required for the organization of a signalling-competent synapse and hence T-cell activation.

  6. Using Photobleaching to Measure Spindle Microtubule Dynamics in Primary Cultures of Dividing Drosophila Meiotic Spermatocytes

    OpenAIRE

    Savoian, Matthew S.

    2015-01-01

    In dividing animal cells, a microtubule (MT)-based bipolar spindle governs chromosome movement. Current models propose that the spindle facilitates and/or generates translocating forces by regionally depolymerizing the kinetochore fibers (k-fibers) that bind each chromosome. It is unclear how conserved these sites and the resultant chromosome-moving mechanisms are between different dividing cell types because of the technical challenges of quantitatively studying MTs in many specimens. In par...

  7. Theory of dynamic force spectroscopy for kinetochore-microtubule attachments: rupture force distribution

    CERN Document Server

    Ghanti, Dipanwita

    2016-01-01

    Application of pulling force, under force-clamp conditions, to kinetochore-microtubule attachments {\\it in-vitro} revealed a catch-bond-like behavior. In an earlier paper ({\\it Sharma et al. Phys. Biol. (2014)} the physical origin of this apparently counter-intuitive phenomenon was traced to the nature of the force-dependence of the (de-)polymerization kinetics of the microtubules. In this brief communication that work is extended to situations where the external forced is ramped up till the attachment gets ruptured. In spite of the fundamental differences in the underlying mechanisms, the trend of variation of the rupture force distribution observed in our model kinetochore-microtubule attachment with the increasing loading rate is qualitatively similar to that displayed by the catch bonds formed in some other ligand-receptor systems. Our theoretical predictions can be tested experimentally by a straightforward modification of the protocol for controlling the force in the optical trap set up that was used in...

  8. High-resolution Time-lapse Imaging and Automated Analysis of Microtubule Dynamics in Living Human Umbilical Vein Endothelial Cells.

    Science.gov (United States)

    Braun, Alexander; Caesar, Nicole M; Dang, Kyvan; Myers, Kenneth A

    2016-01-01

    The physiological process by which new vasculature forms from existing vasculature requires specific signaling events that trigger morphological changes within individual endothelial cells (ECs). These processes are critical for homeostatic maintenance such as wound healing, and are also crucial in promoting tumor growth and metastasis. EC morphology is defined by the organization of the cytoskeleton, a tightly regulated system of actin and microtubule (MT) dynamics that is known to control EC branching, polarity and directional migration, essential components of angiogenesis. To study MT dynamics, we used high-resolution fluorescence microscopy coupled with computational image analysis of fluorescently-labeled MT plus-ends to investigate MT growth dynamics and the regulation of EC branching morphology and directional migration. Time-lapse imaging of living Human Umbilical Vein Endothelial Cells (HUVECs) was performed following transfection with fluorescently-labeled MT End Binding protein 3 (EB3) and Mitotic Centromere Associated Kinesin (MCAK)-specific cDNA constructs to evaluate effects on MT dynamics. PlusTipTracker software was used to track EB3-labeled MT plus ends in order to measure MT growth speeds and MT growth lifetimes in time-lapse images. This methodology allows for the study of MT dynamics and the identification of how localized regulation of MT dynamics within sub-cellular regions contributes to the angiogenic processes of EC branching and migration. PMID:27584860

  9. A Thermodynamic Model of Microtubule Assembly and Disassembly

    OpenAIRE

    Bernard M A G Piette; Junli Liu; Kasper Peeters; Andrei Smertenko; Timothy Hawkins; Michael Deeks; Roy Quinlan; Zakrzewski, Wojciech J.; Hussey, Patrick J.

    2009-01-01

    Microtubules are self-assembling polymers whose dynamics are essential for the normal function of cellular processes including chromosome separation and cytokinesis. Therefore understanding what factors effect microtubule growth is fundamental to our understanding of the control of microtubule based processes. An important factor that determines the status of a microtubule, whether it is growing or shrinking, is the length of the GTP tubulin microtubule cap. Here, we derive a Monte Carlo mode...

  10. ASTER DEM performance

    Science.gov (United States)

    Fujisada, H.; Bailey, G.B.; Kelly, Glen G.; Hara, S.; Abrams, M.J.

    2005-01-01

    The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) instrument onboard the National Aeronautics and Space Administration's Terra spacecraft has an along-track stereoscopic capability using its a near-infrared spectral band to acquire the stereo data. ASTER has two telescopes, one for nadir-viewing and another for backward-viewing, with a base-to-height ratio of 0.6. The spatial resolution is 15 m in the horizontal plane. Parameters such as the line-of-sight vectors and the pointing axis were adjusted during the initial operation period to generate Level-1 data products with a high-quality stereo system performance. The evaluation of the digital elevation model (DEM) data was carried out both by Japanese and U.S. science teams separately using different DEM generation software and reference databases. The vertical accuracy of the DEM data generated from the Level-1A data is 20 m with 95% confidence without ground control point (GCP) correction for individual scenes. Geolocation accuracy that is important for the DEM datasets is better than 50 m. This appears to be limited by the spacecraft position accuracy. In addition, a slight increase in accuracy is observed by using GCPs to generate the stereo data. ?? 2005 IEEE.

  11. Cell cycle-dependent microtubule-based dynamic transport of cytoplasmic dynein in mammalian cells.

    Directory of Open Access Journals (Sweden)

    Takuya Kobayashi

    Full Text Available BACKGROUND: Cytoplasmic dynein complex is a large multi-subunit microtubule (MT-associated molecular motor involved in various cellular functions including organelle positioning, vesicle transport and cell division. However, regulatory mechanism of the cell-cycle dependent distribution of dynein has not fully been understood. METHODOLOGY/PRINCIPAL FINDINGS: Here we report live-cell imaging of cytoplasmic dynein in HeLa cells, by expressing multifunctional green fluorescent protein (mfGFP-tagged 74-kDa intermediate chain (IC74. IC74-mfGFP was successfully incorporated into functional dynein complex. In interphase, dynein moved bi-directionally along with MTs, which might carry cargos such as transport vesicles. A substantial fraction of dynein moved toward cell periphery together with EB1, a member of MT plus end-tracking proteins (+TIPs, suggesting +TIPs-mediated transport of dynein. In late-interphase and prophase, dynein was localized at the centrosomes and the radial MT array. In prometaphase and metaphase, dynein was localized at spindle MTs where it frequently moved from spindle poles toward chromosomes or cell cortex. +TIPs may be involved in the transport of spindle dyneins. Possible kinetochore and cortical dyneins were also observed. CONCLUSIONS AND SIGNIFICANCE: These findings suggest that cytoplasmic dynein is transported to the site of action in preparation for the following cellular events, primarily by the MT-based transport. The MT-based transport may have greater advantage than simple diffusion of soluble dynein in rapid and efficient transport of the limited concentration of the protein.

  12. Phosphorylation of β-Tubulin by the Down Syndrome Kinase, Minibrain/DYRK1a, Regulates Microtubule Dynamics and Dendrite Morphogenesis.

    Science.gov (United States)

    Ori-McKenney, Kassandra M; McKenney, Richard J; Huang, Hector H; Li, Tun; Meltzer, Shan; Jan, Lily Yeh; Vale, Ronald D; Wiita, Arun P; Jan, Yuh Nung

    2016-05-01

    Dendritic arborization patterns are consistent anatomical correlates of genetic disorders such as Down syndrome (DS) and autism spectrum disorders (ASDs). In a screen for abnormal dendrite development, we identified Minibrain (MNB)/DYRK1a, a kinase implicated in DS and ASDs, as a regulator of the microtubule cytoskeleton. We show that MNB is necessary to establish the length and cytoskeletal composition of terminal dendrites by controlling microtubule growth. Altering MNB levels disrupts dendrite morphology and perturbs neuronal electrophysiological activity, resulting in larval mechanosensation defects. Using in vivo and in vitro approaches, we uncover a molecular pathway whereby direct phosphorylation of β-tubulin by MNB inhibits tubulin polymerization, a function that is conserved for mammalian DYRK1a. Our results demonstrate that phosphoregulation of microtubule dynamics by MNB/DYRK1a is critical for dendritic patterning and neuronal function, revealing a previously unidentified mode of posttranslational microtubule regulation in neurons and uncovering a conserved pathway for a DS- and ASD-associated kinase. PMID:27112495

  13. NASA ASTER Level 1T

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) is an advanced multispectral imager that was launched on board NASA's Terra spacecraft in...

  14. MVL-PLA2, a snake venom phospholipase A2, inhibits angiogenesis through an increase in microtubule dynamics and disorganization of focal adhesions.

    Science.gov (United States)

    Bazaa, Amine; Pasquier, Eddy; Defilles, Céline; Limam, Ines; Kessentini-Zouari, Raoudha; Kallech-Ziri, Olfa; El Battari, Assou; Braguer, Diane; El Ayeb, Mohamed; Marrakchi, Naziha; Luis, José

    2010-01-01

    Integrins are essential protagonists of the complex multi-step process of angiogenesis that has now become a major target for the development of anticancer therapies. We recently reported and characterized that MVL-PLA2, a novel phospholipase A2 from Macrovipera lebetina venom, exhibited anti-integrin activity. In this study, we show that MVL-PLA2 also displays potent anti-angiogenic properties. This phospholipase A2 inhibited adhesion and migration of human microvascular-endothelial cells (HMEC-1) in a dose-dependent manner without being cytotoxic. Using Matrigel and chick chorioallantoic membrane assays, we demonstrated that MVL-PLA2, as well as its catalytically inactivated form, significantly inhibited angiogenesis both in vitro and in vivo. We have also found that the actin cytoskeleton and the distribution of alphav beta3 integrin, a critical regulator of angiogenesis and a major component of focal adhesions, were disturbed after MVL-PLA2 treatment. In order to further investigate the mechanism of action of this protein on endothelial cells, we analyzed the dynamic instability behavior of microtubules in living endothelial cells. Interestingly, we showed that MVL-PLA2 significantly increased microtubule dynamicity in HMEC-1 cells by 40%. We propose that the enhancement of microtubule dynamics may explain the alterations in the formation of focal adhesions, leading to inhibition of cell adhesion and migration. PMID:20405031

  15. Models for microtubule cargo transport coupling the Langevin equation to stochastic stepping motor dynamics: Caring about fluctuations.

    Science.gov (United States)

    Bouzat, Sebastián

    2016-01-01

    One-dimensional models coupling a Langevin equation for the cargo position to stochastic stepping dynamics for the motors constitute a relevant framework for analyzing multiple-motor microtubule transport. In this work we explore the consistence of these models focusing on the effects of the thermal noise. We study how to define consistent stepping and detachment rates for the motors as functions of the local forces acting on them in such a way that the cargo velocity and run-time match previously specified functions of the external load, which are set on the base of experimental results. We show that due to the influence of the thermal fluctuations this is not a trivial problem, even for the single-motor case. As a solution, we propose a motor stepping dynamics which considers memory on the motor force. This model leads to better results for single-motor transport than the approaches previously considered in the literature. Moreover, it gives a much better prediction for the stall force of the two-motor case, highly compatible with the experimental findings. We also analyze the fast fluctuations of the cargo position and the influence of the viscosity, comparing the proposed model to the standard one, and we show how the differences on the single-motor dynamics propagate to the multiple motor situations. Finally, we find that the one-dimensional character of the models impede an appropriate description of the fast fluctuations of the cargo position at small loads. We show how this problem can be solved by considering two-dimensional models. PMID:26871095

  16. Multiple domains of human CLASP contribute to microtubule dynamics and organization in vitro and in Xenopus egg extracts.

    Science.gov (United States)

    Patel, Kieren; Nogales, Eva; Heald, Rebecca

    2012-03-01

    Cytoplasmic linker associated proteins (CLASPs) comprise a class of microtubule (MT) plus end-binding proteins (+TIPs) that contribute to the dynamics and organization of MTs during many cellular processes, among them mitosis. Human CLASP proteins contain multiple MT-binding domains, including tumor over-expressed gene (TOG) domains, and a Ser-x-Ile-Pro (SxIP) motif known to target some +TIPs though interaction with end-binding protein 1 (EB1). However, how individual domains contribute to CLASP function is poorly understood. We generated full-length recombinant human CLASP1 and a series of truncation mutants and found that two N-terminal TOG domains make the strongest contribution to MT polymerization and bundling, but also identified a third TOG domain that further contributes to CLASP activity. Plus end tracking by CLASP requires the SxIP motif and interaction with EB1. The C-terminal coiled-coil domain mediates dimerization and association with many other factors, including the kinetochore motor centromere protein E (CENP-E), and the chromokinesin Xkid. Only the full-length protein was able to rescue spindle assembly in Xenopus egg extracts depleted of endogenous CLASP. Deletion of the C-terminal domain caused aberrant MT polymerization and dramatic spindle phenotypes, even with small amounts of added protein, indicating that proper localization of CLASP activity is essential to control MT polymerization during mitosis. PMID:22278908

  17. Alcohol-Induced Alterations in Hepatic Microtubule Dynamics Can Be Explained by Impaired Histone Deacetylase 6 Function

    OpenAIRE

    Shepard, Blythe D.; Joseph, Rohan A.; Kannarkat, George T.; Rutledge, Tara M.; Dean J. Tuma; Tuma, Pamela L.

    2008-01-01

    We have been using polarized, hepatic WIF-B cells to examine ethanol-induced liver injury. These cells polarize in culture and maintain numerous liver-specific activities including the ability to metabolize alcohol. Previously, we found that microtubules were more highly acetylated and more stable in ethanol-treated WIF-B cells and that increased microtubule acetylation required ethanol metabolism and was likely mediated by acetaldehyde. This study was aimed at identifying the mechanism respo...

  18. Recruitment of EB1, a master regulator of microtubule dynamics, to the surface of the Theileria annulata schizont.

    Directory of Open Access Journals (Sweden)

    Kerry L Woods

    2013-05-01

    Full Text Available The apicomplexan parasite Theileria annulata transforms infected host cells, inducing uncontrolled proliferation and clonal expansion of the parasitized cell population. Shortly after sporozoite entry into the target cell, the surrounding host cell membrane is dissolved and an array of host cell microtubules (MTs surrounds the parasite, which develops into the transforming schizont. The latter does not egress to invade and transform other cells. Instead, it remains tethered to host cell MTs and, during mitosis and cytokinesis, engages the cell's astral and central spindle MTs to secure its distribution between the two daughter cells. The molecular mechanism by which the schizont recruits and stabilizes host cell MTs is not known. MT minus ends are mostly anchored in the MT organizing center, while the plus ends explore the cellular space, switching constantly between phases of growth and shrinkage (called dynamic instability. Assuming the plus ends of growing MTs provide the first point of contact with the parasite, we focused on the complex protein machinery associated with these structures. We now report how the schizont recruits end-binding protein 1 (EB1, a central component of the MT plus end protein interaction network and key regulator of host cell MT dynamics. Using a range of in vitro experiments, we demonstrate that T. annulata p104, a polymorphic antigen expressed on the schizont surface, functions as a genuine EB1-binding protein and can recruit EB1 in the absence of any other parasite proteins. Binding strictly depends on a consensus SxIP motif located in a highly disordered C-terminal region of p104. We further show that parasite interaction with host cell EB1 is cell cycle regulated. This is the first description of a pathogen-encoded protein to interact with EB1 via a bona-fide SxIP motif. Our findings provide important new insight into the mode of interaction between Theileria and the host cell cytoskeleton.

  19. Recruitment of EB1, a Master Regulator of Microtubule Dynamics, to the Surface of the Theileria annulata Schizont

    KAUST Repository

    Woods, Kerry L.

    2013-05-09

    The apicomplexan parasite Theileria annulata transforms infected host cells, inducing uncontrolled proliferation and clonal expansion of the parasitized cell population. Shortly after sporozoite entry into the target cell, the surrounding host cell membrane is dissolved and an array of host cell microtubules (MTs) surrounds the parasite, which develops into the transforming schizont. The latter does not egress to invade and transform other cells. Instead, it remains tethered to host cell MTs and, during mitosis and cytokinesis, engages the cell\\'s astral and central spindle MTs to secure its distribution between the two daughter cells. The molecular mechanism by which the schizont recruits and stabilizes host cell MTs is not known. MT minus ends are mostly anchored in the MT organizing center, while the plus ends explore the cellular space, switching constantly between phases of growth and shrinkage (called dynamic instability). Assuming the plus ends of growing MTs provide the first point of contact with the parasite, we focused on the complex protein machinery associated with these structures. We now report how the schizont recruits end-binding protein 1 (EB1), a central component of the MT plus end protein interaction network and key regulator of host cell MT dynamics. Using a range of in vitro experiments, we demonstrate that T. annulata p104, a polymorphic antigen expressed on the schizont surface, functions as a genuine EB1-binding protein and can recruit EB1 in the absence of any other parasite proteins. Binding strictly depends on a consensus SxIP motif located in a highly disordered C-terminal region of p104. We further show that parasite interaction with host cell EB1 is cell cycle regulated. This is the first description of a pathogen-encoded protein to interact with EB1 via a bona-fide SxIP motif. Our findings provide important new insight into the mode of interaction between Theileria and the host cell cytoskeleton. 2013 Woods et al.

  20. Dynamic Recruitment of Cdc2 to Specific Microtubule Structures during Mitosis

    Czech Academy of Sciences Publication Activity Database

    Weingartner, M.; Binarová, Pavla; Dryková, Denisa; Achweighofer, A.; David, P.; Heberle, E.; Doonan, J.; Bogre, L.

    2001-01-01

    Roč. 13, - (2001), s. 1929-1943. ISSN 1040-4651 R&D Projects: GA AV ČR IAA5020803 Grant ostatní: XE(XC) GA QLRT-00454 Keywords : dynamic * recruitment * specific Subject RIV: EE - Microbiology, Virology Impact factor: 11.081, year: 2001

  1. Structural investigations into the binding mode of novel neolignans Cmp10 and Cmp19 microtubule stabilizers by in silico molecular docking, molecular dynamics, and binding free energy calculations.

    Science.gov (United States)

    Tripathi, Shubhandra; Kumar, Akhil; Kumar, B Sathish; Negi, Arvind S; Sharma, Ashok

    2016-06-01

    Microtubule stabilizers provide an important mode of treatment via mitotic cell arrest of cancer cells. Recently, we reported two novel neolignans derivatives Cmp10 and Cmp19 showing anticancer activity and working as microtubule stabilizers at micromolar concentrations. In this study, we have explored the binding site, mode of binding, and stabilization by two novel microtubule stabilizers Cmp10 and Cmp19 using in silico molecular docking, molecular dynamics (MD) simulation, and binding free energy calculations. Molecular docking studies were performed to explore the β-tubulin binding site of Cmp10 and Cmp19. Further, MD simulations were used to probe the β-tubulin stabilization mechanism by Cmp10 and Cmp19. Binding affinity was also compared for Cmp10 and Cmp19 using binding free energy calculations. Our docking results revealed that both the compounds bind at Ptxl binding site in β-tubulin. MD simulation studies showed that Cmp10 and Cmp19 binding stabilizes M-loop (Phe272-Val288) residues of β-tubulin and prevent its dynamics, leading to a better packing between α and β subunits from adjacent tubulin dimers. In addition, His229, Ser280 and Gln281, and Arg278, Thr276, and Ser232 were found to be the key amino acid residues forming H-bonds with Cmp10 and Cmp19, respectively. Consequently, binding free energy calculations indicated that Cmp10 (-113.655 kJ/mol) had better binding compared to Cmp19 (-95.216 kJ/mol). This study provides useful insight for better understanding of the binding mechanism of Cmp10 and Cmp19 and will be helpful in designing novel microtubule stabilizers. PMID:26212016

  2. Microtubules self-repair in response to mechanical stress

    Science.gov (United States)

    Schaedel, Laura; John, Karin; Gaillard, Jérémie; Nachury, Maxence V.; Blanchoin, Laurent; Théry, Manuel

    2015-11-01

    Microtubules--which define the shape of axons, cilia and flagella, and provide tracks for intracellular transport--can be highly bent by intracellular forces, and microtubule structure and stiffness are thought to be affected by physical constraints. Yet how microtubules tolerate the vast forces exerted on them remains unknown. Here, by using a microfluidic device, we show that microtubule stiffness decreases incrementally with each cycle of bending and release. Similar to other cases of material fatigue, the concentration of mechanical stresses on pre-existing defects in the microtubule lattice is responsible for the generation of more extensive damage, which further decreases microtubule stiffness. Strikingly, damaged microtubules were able to incorporate new tubulin dimers into their lattice and recover their initial stiffness. Our findings demonstrate that microtubules are ductile materials with self-healing properties, that their dynamics does not exclusively occur at their ends, and that their lattice plasticity enables the microtubules' adaptation to mechanical stresses.

  3. Microtubules Have Opposite Orientation in Axons and Dendrites of Drosophila Neurons

    OpenAIRE

    Stone, Michelle C.; Roegiers, Fabrice; Rolls, Melissa M

    2008-01-01

    In vertebrate neurons, axons have a uniform arrangement of microtubules with plus ends distal to the cell body (plus-end-out), and dendrites have equal numbers of plus- and minus-end-out microtubules. To determine whether microtubule orientation is a conserved feature of axons and dendrites, we analyzed microtubule orientation in invertebrate neurons. Using microtubule plus end dynamics, we mapped microtubule orientation in Drosophila sensory neurons, interneurons, and motor neurons. As expec...

  4. Evidence for two distinct binding sites for tau on microtubules

    Science.gov (United States)

    Makrides, Victoria; Massie, Michelle R.; Feinstein, Stuart C.; Lew, John

    2004-01-01

    The microtubule-associated protein tau regulates diverse and essential microtubule functions, from the nucleation and promotion of microtubule polymerization to the regulation of microtubule polarity and dynamics, as well as the spacing and bundling of axonal microtubules. Thermodynamic studies show that tau interacts with microtubules in the low- to mid-nanomolar range, implying moderate binding affinity. At the same time, it is well established that microtubule-bound tau does not undergo exchange with the bulk medium readily, suggesting that the tau-microtubule interaction is essentially irreversible. Given this dilemma, we investigated the mechanism of interaction between tau and microtubules in kinetic detail. Stopped-flow kinetic analysis reveals moderate binding affinity between tau and preassembled microtubules and rapid dissociation/association kinetics. In contrast, when microtubules are generated by copolymerization of tubulin and tau, a distinct population of microtubule-bound tau is observed, the binding of which seems irreversible. We propose that reversible binding occurs between tau and the surface of preassembled microtubules, whereas irreversible binding results when tau is coassembled with tubulin into a tau-microtubule copolymer. Because the latter is expected to be physiologically relevant, its characterization is of central importance. PMID:15096589

  5. Leiodermatolide, a novel marine natural product, has potent cytotoxic and antimitotic activity against cancer cells, appears to affect microtubule dynamics, and exhibits antitumor activity.

    Science.gov (United States)

    Guzmán, Esther A; Xu, Qunli; Pitts, Tara P; Mitsuhashi, Kaoru Ogawa; Baker, Cheryl; Linley, Patricia A; Oestreicher, Judy; Tendyke, Karen; Winder, Priscilla L; Suh, Edward M; Wright, Amy E

    2016-11-01

    Pancreatic cancer, the fourth leading cause of cancer death in the United States, has a negative prognosis because metastasis occurs before symptoms manifest. Leiodermatolide, a polyketide macrolide with antimitotic activity isolated from a deep water sponge of the genus Leiodermatium, exhibits potent and selective cytotoxicity toward the pancreatic cancer cell lines AsPC-1, PANC-1, BxPC-3, and MIA PaCa-2, and potent cytotoxicity against skin, breast and colon cancer cell lines. Induction of apoptosis by leiodermatolide was confirmed in the AsPC-1, BxPC-3 and MIA PaCa-2 cells. Leiodermatolide induces cell cycle arrest but has no effects on in vitro polymerization or depolymerization of tubulin alone, while it enhances polymerization of tubulin containing microtubule associated proteins (MAPs). Observations through confocal microscopy show that leiodermatolide, at low concentrations, causes minimal effects on polymerization or depolymerization of the microtubule network in interphase cells, but disruption of spindle formation in mitotic cells. At higher concentrations, depolymerization of the microtubule network is observed. Visualization of the growing microtubule in HeLa cells expressing GFP-tagged plus end binding protein EB-1 showed that leiodermatolide stopped the polymerization of tubulin. These results suggest that leiodermatolide may affect tubulin dynamics without directly interacting with tubulin and hint at a unique mechanism of action. In a mouse model of metastatic pancreatic cancer, leiodermatolide exhibited significant tumor reduction when compared to gemcitabine and controls. The antitumor activities of leiodermatolide, as well as the proven utility of antimitotic compounds against cancer, make leiodermatolide an interesting compound with potential chemotherapeutic effects that may merit further research. PMID:27376928

  6. Kinesin-12 motors cooperate to suppress microtubule catastrophes and drive the formation of parallel microtubule bundles.

    Science.gov (United States)

    Drechsler, Hauke; McAinsh, Andrew D

    2016-03-22

    Human Kinesin-12 (hKif15) plays a crucial role in assembly and maintenance of the mitotic spindle. These functions of hKif15 are partially redundant with Kinesin-5 (Eg5), which can cross-link and drive the extensile sliding of antiparallel microtubules. Although both motors are known to be tetramers, the functional properties of hKif15 are less well understood. Here we reveal how single or multiple Kif15 motors can cross-link, transport, and focus the plus-ends of intersecting microtubules. During transport, Kif15 motors step simultaneously along both microtubules with relative microtubule transport driven by a velocity differential between motor domain pairs. Remarkably, this differential is affected by the underlying intersection geometry: the differential is low on parallel and extreme on antiparallel microtubules where one motor domain pair becomes immobile. As a result, when intersecting microtubules are antiparallel, canonical transport of one microtubule along the other is allowed because one motor is firmly attached to one microtubule while it is stepping on the other. When intersecting microtubules are parallel, however, Kif15 motors can drive (biased) parallel sliding because the motor simultaneously steps on both microtubules that it cross-links. These microtubule rearrangements will focus microtubule plus-ends and finally lead to the formation of parallel bundles. At the same time, Kif15 motors cooperate to suppress catastrophe events at polymerizing microtubule plus-ends, raising the possibility that Kif15 motors may synchronize the dynamics of bundles that they have assembled. Thus, Kif15 is adapted to operate on parallel microtubule substrates, a property that clearly distinguishes it from the other tetrameric spindle motor, Eg5. PMID:26969727

  7. The influence of Aster x salignus Willd. Invasion on the diversity of soil yeast communities

    Science.gov (United States)

    Glushakova, A. M.; Kachalkin, A. V.; Chernov, I. Yu.

    2016-07-01

    The annual dynamics of yeast communities were studied in the soddy-podzolic soil under the thickets of Aster x salignus Willd., one of the widespread invasive plant species in central Russia. Yeast groups in the soils under continuous aster thickets were found to differ greatly from the yeast communities in the soils under the adjacent indigenous meadow vegetation. In both biotopes the same species ( Candida vartiovaarae, Candida sake, and Cryptococcus terreus) are dominants. However, in the soils under indigenous grasses, eurybiontic yeasts Rhodotorula mucilaginosa, which almost never occur in the soil under aster, are widespread. In the soil under aster, the shares of other typical epiphytic and pedobiontic yeast fungi (ascomycetic species Wickerhamomyces aniomalus, Barnettozyma californica and basidiomycetic species Cystofilobasidium macerans, Guehomyces pullulans) significantly increase. Thus, the invasion of Aster x salignus has a clear effect on soil yeast complexes reducing their taxonomic and ecological diversity.

  8. Contribution of noncentrosomal microtubules to spindle assembly in Drosophila spermatocytes.

    Directory of Open Access Journals (Sweden)

    Elena Rebollo

    2004-01-01

    Full Text Available Previous data suggested that anastral spindles, morphologically similar to those found in oocytes, can assemble in a centrosome-independent manner in cells that contain centrosomes. It is assumed that the microtubules that build these acentrosomal spindles originate over the chromatin. However, the actual processes of centrosome-independent microtubule nucleation, polymerisation, and sorting have not been documented in centrosome-containing cells. We have identified two experimental conditions in which centrosomes are kept close to the plasma membrane, away from the nuclear region, throughout meiosis I in Drosophila spermatocytes. Time-lapse confocal microscopy of these cells labelled with fluorescent chimeras reveals centrosome-independent microtubule nucleation, growth, and sorting into a bipolar spindle array over the nuclear region, away from the asters. The onset of noncentrosomal microtubule nucleation is significantly delayed with respect to nuclear envelope breakdown and coincides with the end of chromosome condensation. It takes place in foci that are close to the membranes that ensheath the nuclear region, not over the condensed chromosomes. Metaphase plates are formed in these spindles, and, in a fraction of them, some degree of polewards chromosome segregation takes place. In these cells that contain both membrane-bound asters and an anastral spindle, the orientation of the cytokinesis furrow correlates with the position of the asters and is independent of the orientation of the spindle. We conclude that the fenestrated nuclear envelope may significantly contribute to the normal process of spindle assembly in Drosophila spermatocytes. We also conclude that the anastral spindles that we have observed are not likely to provide a robust back-up able to ensure successful cell division. We propose that these anastral microtubule arrays could be a constitutive component of wild-type spindles, normally masked by the abundance of centrosome

  9. NO serves as a signaling intermediate downstream of H2O2 to modulate dynamic microtubule cytoskeleton during responses to VD-toxins in Arabidopsis

    OpenAIRE

    Yao, Lin-Lin; Pei, Bao-Lei; Zhou, Qun; Li, Ying-Zhang

    2012-01-01

    Although hydrogen peroxide (H2O2) and nitric oxide (NO) can act as an upstream signaling molecule to modulate the dynamic microtubule cytoskeleton during the defense responses to Verticillium dahliae (VD) toxins in Arabidopsis, it is not known the relationship between these two signaling molecules. Here, we show that VD-toxin-induced NO accumulation was dependent on prior H2O2 production, NO is downstream of H2O2 in the signaling process, and that H2O2 acted synergistically with NO to modulat...

  10. Lessons from in vitro reconstitution analyses of plant microtubule-associated proteins

    OpenAIRE

    Hamada, Takahiro

    2014-01-01

    Plant microtubules, composed of tubulin GTPase, are irreplaceable cellular components that regulate the directions of cell expansion and cell division, chromosome segregation and cell plate formation. To accomplish these functions, plant cells organize microtubule structures by regulating microtubule dynamics. Each microtubule localizes to the proper position with repeated growth and shortening. Although it is possible to reconstitute microtubule dynamics with pure tubulin solution in vitro, ...

  11. A novel microtubule inhibitor, MT3-037, causes cancer cell apoptosis by inducing mitotic arrest and interfering with microtubule dynamics

    Science.gov (United States)

    Chang, Ling-Chu; Yu, Yung-Luen; Hsieh, Min-Tsang; Wang, Sheng-Hung; Chou, Ruey-Hwang; Huang, Wei-Chien; Lin, Hui-Yi; Hung, Hsin-Yi; Huang, Li-Jiau; Kuo, Sheng-Chu

    2016-01-01

    We investigated the anticancer potential of a new synthetic compound, 7-(3-fluorophenyl)-4-methylpyrido-[2,3-d]pyrimidin-5(8H)-one (MT3-037). We found that MT3-037 effectively decreased the cancer cell viability by inducing apoptosis. MT3-037 treatments led to cell cycle arrest at M phase, with a marked increase in both expression of cyclin B1 and cyclin-dependent kinase 1 (CDK1) as well as in CDK1 kinase activity. Key proteins that regulate mitotic spindle dynamics, including survivin, Aurora A/B kinases, and polo-like kinase 1 (PLK1), were activated in MT3-037-treated cells. MT3-037-induced apoptosis was accompanied by activation of a pro-apoptotic factor, FADD, and the inactivation of apoptosis inhibitors, Bcl-2 and Bcl-xL, resulting in the cleavage/activation of caspases. The activation of c-Jun N-terminal kinase (JNK) was associated with MT3-037-induced CDK1 and Aurora A/B activation and apoptosis. Immunofluorescence staining of tubulin indicated that MT3-037 altered tubulin networks in cancer cells. Moreover, an in vitro tubulin polymerization assay revealed that MT3-037 inhibited the tubulin polymerization by direct binding to tubulin. Molecular docking studies and binding site completion assays revealed that MT3-037 binds to the colchicine-binding site. Furthermore, MT3-037 significantly inhibited the tumor growth in both MDAMB-468 and Erlotinib-resistant MDA-MB-468 xenograft mouse models. In addition, MT3-037 inhibited the angiogenesis and disrupted the tube formation by human endothelial cells. Our study demonstrates that MT3-037 is a potential tubulin-disrupting agent for antitumor therapy.

  12. Insights into Antiparallel Microtubule Crosslinking by PRC1, a Conserved Nonmotor Microtubule Binding Protein

    Energy Technology Data Exchange (ETDEWEB)

    Subramanian, Radhika; Wilson-Kubalek, Elizabeth M.; Arthur, Christopher P.; Bick, Matthew J.; Campbell, Elizabeth A.; Darst, Seth A.; Milligan, Ronald A.; Kapoor, Tarun M. (Scripps); (Rockefeller)

    2010-09-03

    Formation of microtubule architectures, required for cell shape maintenance in yeast, directional cell expansion in plants and cytokinesis in eukaryotes, depends on antiparallel microtubule crosslinking by the conserved MAP65 protein family. Here, we combine structural and single molecule fluorescence methods to examine how PRC1, the human MAP65, crosslinks antiparallel microtubules. We find that PRC1's microtubule binding is mediated by a structured domain with a spectrin-fold and an unstructured Lys/Arg-rich domain. These two domains, at each end of a homodimer, are connected by a linkage that is flexible on single microtubules, but forms well-defined crossbridges between antiparallel filaments. Further, we show that PRC1 crosslinks are compliant and do not substantially resist filament sliding by motor proteins in vitro. Together, our data show how MAP65s, by combining structural flexibility and rigidity, tune microtubule associations to establish crosslinks that selectively mark antiparallel overlap in dynamic cytoskeletal networks.

  13. Microtubule heterogeneity of Ornithogalum umbellatum ovary epidermal cells: non-stable cortical microtubules and stable lipotubuloid microtubules

    Directory of Open Access Journals (Sweden)

    Maria Kwiatkowska

    2011-07-01

    Full Text Available Lipotubuloids, structures containing lipid bodies and microtubules, are described in ovary epidermalcells of Ornithogalum umbellatum. Microtubules of lipotubuloids can be fixed in electron microscope fixativecontaining only buffered OsO4 or in glutaraldehyde with OsO4 post-fixation, or in a mixture of OsO4 and glutaraldehyde[1]. None of these substances fixes cortical microtubules of ovary epidermis of this plant which ischaracterized by dynamic longitudinal growth. However, cortical microtubules can be fixed with cold methanolaccording immunocytological methods with the use of b-tubulin antibodies and fluorescein. The existence ofcortical microtubules has also been evidenced by EM observations solely after the use of taxol, microtubulestabilizer, and fixation in a glutaraldehyde/OsO4 mixture. These microtubules mostly lie transversely, sometimesobliquely, and rarely parallel to the cell axis. Staining, using Ruthenium Red and silver hexamine, has revealedthat lipotubuloid microtubules surface is covered with polysaccharides. The presumption has been made thatthe presence of a polysaccharide layer enhances the stability of lipotubuloid microtubules.

  14. Motor-mediated cortical versus astral microtubule organization in lipid-monolayered droplets.

    Science.gov (United States)

    Baumann, Hella; Surrey, Thomas

    2014-08-01

    The correct spatial organization of microtubules is of crucial importance for determining the internal architecture of eukaryotic cells. Microtubules are arranged in space by a multitude of biochemical activities and by spatial constraints imposed by the cell boundary. The principles underlying the establishment of distinct intracellular architectures are only poorly understood. Here, we studied the effect of spatial confinement on the self-organization of purified motors and microtubules that are encapsulated in lipid-monolayered droplets in oil, varying in diameter from 5-100 μm, which covers the size range of typical cell bodies. We found that droplet size alone had a major organizing influence. The presence of a microtubule-crosslinking motor protein decreased the number of accessible types of microtubule organizations. Depending on the degree of spatial confinement, the presence of the motor caused either the formation of a cortical array of bent microtubule bundles or the generation of single microtubule asters in the droplets. These are two of the most prominent forms of microtubule arrangements in plant and metazoan cells. Our results provide insights into the combined organizing influence of spatial constraints and cross-linking motor activities determining distinct microtubule architectures in a minimal biomimetic system. In the future, this simple lipid-monolayered droplet system characterized here can be expanded readily to include further biochemical activities or used as the starting point for the investigation of motor-mediated microtubule organization inside liposomes surrounded by a deformable lipid bilayer. PMID:24966327

  15. Recent developments in seismic analysis in the code Aster

    International Nuclear Information System (INIS)

    Progress in the field of seismic qualification and design methods made these last few years allows physical phenomena actually in play to be better considered, while cutting down the conservatism associated with some simplified design methods. So following the change in methods and developing the most advantageous ones among them contributes to the process of the seismic margins assessment and the preparation of new design tools for future series. In this paper, the main developments and improvements in methods which have been made these last two years in the Code Aster, in order to improve seismic calculation methods and seismic margin assessment are presented. The first development relates to making the MISS3D soil structure interaction code available, thanks to an interface made with the Code Aster. The second relates to the possibility of making modal basis time calculations on multi-supported structures by considering local non linearities like impact, friction or squeeze fluid forces. Recent developments in random dynamics and postprocessing devoted to earthquake designs are then mentioned. Three applications of these developments are then ut forward. The first application relates to a test case for soil structure interaction design using MISS3D-Aster coupling. The second is a test case for a multi-supported structure. The last application, more for manufacturing, refers to seismic qualification of Main Live Steam stop valves. First results of the independent validation of the Code Aster seismic design functionalities, which provide and improve the quality of software, are also recalled. (authors)

  16. Potent antiproliferative cembrenoids accumulate in tobacco upon infection with Rhodococcus fascians and trigger unusual microtubule dynamics in human glioblastoma cells.

    Directory of Open Access Journals (Sweden)

    Aminata P Nacoulma

    Full Text Available AIMS: Though plant metabolic changes are known to occur during interactions with bacteria, these were rarely challenged for pharmacologically active compounds suitable for further drug development. Here, the occurrence of specific chemicals with antiproliferative activity against human cancer cell lines was evidenced in hyperplasia (leafy galls induced when plants interact with particular phytopathogens, such as the Actinomycete Rhodococcus fascians. METHODS: We examined leafy galls fraction F3.1.1 on cell proliferation, cell division and cytoskeletal disorganization of human cancer cell lines using time-lapse videomicroscopy imaging, combined with flow cytometry and immunofluorescence analysis. We determined the F3.1.1-fraction composition by gas chromatography coupled to mass spectrometry. RESULTS: The leafy galls induced on tobacco by R. fascians yielded fraction F3.1.1 which inhibited proliferation of glioblastoma U373 cells with an IC50 of 4.5 µg/mL, F.3.1.1 was shown to increase cell division duration, cause nuclear morphological deformations and cell enlargement, and, at higher concentrations, karyokinesis defects leading to polyploidization and apoptosis. F3.1.1 consisted of a mixture of isomers belonging to the cembrenoids. The cellular defects induced by F3.1.1 were caused by a peculiar cytoskeletal disorganization, with the occurrence of fragmented tubulin and strongly organized microtubule aggregates within the same cell. Colchicine, paclitaxel, and cembrene also affected U373 cell proliferation and karyokinesis, but the induced microtubule rearrangement was very different from that provoked by F3.1.1. Altogether our data indicate that the cembrenoid isomers in F3.1.1 have a unique mode of action and are able to simultaneously modulate microtubule polymerization and stability.

  17. Effect of the microtubule-associated protein tau on dynamics of single-headed motor proteins KIF1A

    Science.gov (United States)

    Sparacino, J.; Farías, M. G.; Lamberti, P. W.

    2014-02-01

    Intracellular transport based on molecular motors and its regulation are crucial to the functioning of cells. Filamentary tracks of the cells are abundantly decorated with nonmotile microtubule-associated proteins, such as tau. Motivated by experiments on kinesin-tau interactions [Dixit et al., Science 319, 1086 (2008), 10.1126/science.1152993] we developed a stochastic model of interacting single-headed motor proteins KIF1A that also takes into account the interactions between motor proteins and tau molecules. Our model reproduces experimental observations and predicts significant effects of tau on bound time and run length which suggest an important role of tau in regulation of kinesin-based transport.

  18. Effect of microtubule-associated protein tau in dynamics of single-headed motor proteins KIF1A

    CERN Document Server

    Sparacino, J; Lamberti, P W

    2013-01-01

    Intracellular transport based on molecular motors and its regulation are crucial to the functioning of cells. Filamentary tracks of the cells are abundantly decorated with non-motile microtubule-associated proteins, such as tau. Motivated by experiments on kinesin-tau interactions [Dixit et al. Science 319, 1086 (2008)] we developed a stochastic model of interacting single-headed motor proteins KIF1A that also takes into account the interactions between motor proteins and tau molecules. Our model reproduce experimental observations and predicts significant effects of tau on bound time and run length which suggest an important role of tau in regulation of kinesin-based transport.

  19. Recent developments in seismic analysis in the code Aster; Les developpements recents en analyse sismique dans le code aster

    Energy Technology Data Exchange (ETDEWEB)

    Guihot, P.; Devesa, G.; Dumond, A.; Panet, M.; Waeckel, F.

    1996-12-31

    Progress in the field of seismic qualification and design methods made these last few years allows physical phenomena actually in play to be better considered, while cutting down the conservatism associated with some simplified design methods. So following the change in methods and developing the most advantageous ones among them contributes to the process of the seismic margins assessment and the preparation of new design tools for future series. In this paper, the main developments and improvements in methods which have been made these last two years in the Code Aster, in order to improve seismic calculation methods and seismic margin assessment are presented. The first development relates to making the MISS3D soil structure interaction code available, thanks to an interface made with the Code Aster. The second relates to the possibility of making modal basis time calculations on multi-supported structures by considering local non linearities like impact, friction or squeeze fluid forces. Recent developments in random dynamics and postprocessing devoted to earthquake designs are then mentioned. Three applications of these developments are then ut forward. The first application relates to a test case for soil structure interaction design using MISS3D-Aster coupling. The second is a test case for a multi-supported structure. The last application, more for manufacturing, refers to seismic qualification of Main Live Steam stop valves. First results of the independent validation of the Code Aster seismic design functionalities, which provide and improve the quality of software, are also recalled. (authors). 11 refs.

  20. Membrane/microtubule tip attachment complexes (TACs) allow the assembly dynamics of plus ends to push and pull membranes into tubulovesicular networks in interphase Xenopus egg extracts

    OpenAIRE

    1995-01-01

    We discovered by using high resolution video microscopy, that membranes become attached selectively to the growing plus ends of microtubules by membrane/microtubule tip attachment complexes (TACs) in interphase- arrested, undiluted, Xenopus egg extracts. Persistent plus end growth of stationary microtubules pushed the membranes into thin tubules and dragged them through the cytoplasm at the approximately 20 microns/min velocity typical of free plus ends. Membrane tubules also remained attache...

  1. Comparison of ASTER TOA Radiance with MODIS

    Science.gov (United States)

    Kanno, Hiroto; Iwasaki, Akira

    Synergistic fusion of multi-resolution remote sensing images is important to data users that require observation frequency, spatial resolution and observation wavelength. However, it requires compatibility of these data products. Top of Atmosphere (TOA) radiances of the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) and the Moderate Resolution Imaging Spectroradiometer (MODIS) are compared in the shortwave infrared (SWIR) and it is found that the sensitivity of MODIS is slightly higher and that the ASTER radiance is higher at the lower reflectance regions. ASTER suffers from stray light phenomena because of the nature of a pushbroom sensor, which stands out for SWIR. In contrast, MODIS is free from ghost phenomena in reflective bands, although existence of stray light is known in thermal bands. In this work, correction of stray light in ASTER is carried out using MODIS images with a wider swath, which makes the correction of full scene of ASTER images.

  2. Dimer model for Tau proteins bound in microtubule bundles

    Science.gov (United States)

    Hall, Natalie; Kluber, Alexander; Hayre, N. Robert; Singh, Rajiv; Cox, Daniel

    2013-03-01

    The microtubule associated protein tau is important in nucleating and maintaining microtubule spacing and structure in neuronal axons. Modification of tau is implicated as a later stage process in Alzheimer's disease, but little is known about the structure of tau in microtubule bundles. We present preliminary work on a proposed model for tau dimers in microtubule bundles (dimers are the minimal units since there is one microtubule binding domain per tau). First, a model of tau monomer was created and its characteristics explored using implicit solvent molecular dynamics simulation. Multiple simulations yield a partially collapsed form with separate positively/negatively charged clumps, but which are a factor of two smaller than required by observed microtubule spacing. We argue that this will elongate in dimer form to lower electrostatic energy at a cost of entropic ``spring'' energy. We will present preliminary results on steered molecular dynamics runs on tau dimers to estimate the actual force constant. Supported by US NSF Grant DMR 1207624.

  3. Microtubule stabilization reduces scarring and causes axon regeneration after spinal cord injury

    NARCIS (Netherlands)

    F. Hellal (Farida); A. Hurtado (Andres); J. Ruschel (Jörg); K.C. Flynn (Kevin); C.J. Laskowski (Claudia); M. Umlauf (Martina); L.C. Kapitein (Lukas); D. Strikis (Dinara); V. Lemmon (Vance); J. Bixby (John); C.C. Hoogenraad (Casper); F. Bradke (Frank)

    2011-01-01

    textabstractHypertrophic scarring and poor intrinsic axon growth capacity constitute major obstacles for spinal cord repair. These processes are tightly regulated by microtubule dynamics. Here, moderate microtubule stabilization decreased scar formation after spinal cord injury in rodents through va

  4. A mutation of the fission yeast EB1 overcomes negative regulation by phosphorylation and stabilizes microtubules

    International Nuclear Information System (INIS)

    Mal3 is a fission yeast homolog of EB1, a plus-end tracking protein (+ TIP). We have generated a mutation (89R) replacing glutamine with arginine in the calponin homology (CH) domain of Mal3. Analysis of the 89R mutant in vitro has revealed that the mutation confers a higher affinity to microtubules and enhances the intrinsic activity to promote the microtubule-assembly. The mutant Mal3 is no longer a + TIP, but binds strongly the microtubule lattice. Live cell imaging has revealed that while the wild type Mal3 proteins dissociate from the tip of the growing microtubules before the onset of shrinkage, the mutant Mal3 proteins persist on microtubules and reduces a rate of shrinkage after a longer pausing period. Consequently, the mutant Mal3 proteins cause abnormal elongation of microtubules composing the spindle and aster. Mal3 is phosphorylated at a cluster of serine/threonine residues in the linker connecting the CH and EB1-like C-terminal motif domains. The phosphorylation occurs in a microtubule-dependent manner and reduces the affinity of Mal3 to microtubules. We propose that because the 89R mutation is resistant to the effect of phosphorylation, it can associate persistently with microtubules and confers a stronger stability of microtubules likely by reinforcing the cylindrical structure. -- Highlights: ► We characterize a mutation (mal3-89R) in fission yeast homolog of EB1. ► The mutation enhances the activity to assemble microtubules. ► Mal3 is phosphorylated in a microtubule-dependent manner. ► The phosphorylation negatively regulates the Mal3 activity.

  5. Evapotranspiration estimates using ASTER thermal infrared imagery

    Science.gov (United States)

    Schmugge, Thomas J.; French, Andrew; Kustas, William P.

    2002-01-01

    The recent availability of multi-band thermal infrared imagery from the Advanced Spaceborne Thermal Emission & Reflection radiometer (ASTER) on NASA's Terra satellite has made feasible the estimation of evapotranspiration at 90 meter resolution. One critical variable in evapotranspiration models is surface temperature. With ASTER the temperature can be reliably determined over a wide range of vegetative conditions. The requirements for accurate temperature measurement include minimization of atmospheric effects, correction for surface emissivity variations and sufficient resolution for the type of vegetative cover. When ASTER imagery are combined with meteorological observations, these requirements are usually met and result in surface temperatures accurate within 1-2 C. ASTER-based evapotranspiration estimates were made during September 2000 over a sub-humid regions at the USDA/ARS Grazinglands research laboratory near El Reno in central Oklahoma. Daily evapotranspiration was estimated by applying instantaneous ASTER surface temperatures, as well as ASTER-based vegetation indices from visible-near infrared bands, to a two-source energy flux model and combining the result with separately acquired hourly solar radiation data. The estimates of surface fluxes show reasonable agreement (within 50-100 W/m2) with ground-based Bowen Ratio Energy Balance measurements and illustrate how ASTER measurements can be applied to heterogeneous terrain. There are some significant discrepancies, however, and these may in part be due to difficulty quantifying fractional cover of senescent vegetation.

  6. Effects of silver ions (Ag+) on contractile ring function and microtubule dynamics during first cleavage in Ilyanassa obsoleta

    Science.gov (United States)

    Conrad, A. H.; Stephens, A. P.; Paulsen, A. Q.; Schwarting, S. S.; Conrad, G. W.; Spooner, B. S. (Principal Investigator)

    1994-01-01

    The terminal phase of cell division involves tight constriction of the cleavage furrow contractile ring, stabilization/elongation of the intercellular bridge, and final separation of the daughter cells. At first cleavage, the fertilized eggs of the mollusk, Ilyanassa obsoleta, form two contractile rings at right angles to each other in the same cytoplasm that constrict to tight necks and partition the egg into a trefoil shape. The cleavage furrow contractile ring (CF) normally constricts around many midbody microtubules (MTs) and results in cleavage; the polar lobe constriction contractile ring (PLC) normally constricts around very few MTs and subsequently relaxes without cleavage. In the presence of Ag+ ions, the PLC 1) begins MT-dependent rapid constriction sooner than controls, 2) encircles more MTs than control egg PLCs, 3) elongates much more than control PLCs, and 4) remains tightly constricted and effectively cleaves the polar lobe from the egg. If Ag(+)-incubated eggs are returned to normal seawater at trefoil, tubulin fluorescence disappears from the PLC neck and the neck relaxes. If nocodazole, a drug that depolymerizes MTs, is added to Ag(+)-incubated eggs during early PLC constriction, the PLC is not stabilized and eventually relaxes. However, if nocodazole is added to Ag(+)-incubated eggs at trefoil, tubulin fluorescence disappears from the PLC neck but the neck remains constricted. These results suggest that Ag+ accelerates and gradually stabilizes the PLC constriction by a mechanism that is initially MT-dependent, but that progressively becomes MT-independent.

  7. Axis establishment and microtubule-mediated waves prior to first cleavage in Beroe ovata.

    Science.gov (United States)

    Houliston, E; Carré, D; Johnston, J A; Sardet, C

    1993-01-01

    The single axis (oral-aboral) and two planes of symmetry of the ctenophore Beroe ovata become established with respect to the position of zygote nucleus formation and the orientation of first cleavage. Bisection of Beroe eggs at different times revealed that differences in egg organisation are established in relation to the presumptive oral-aboral axis before first cleavage. Lateral fragments produced after but not before the time of first mitosis developed into larvae lacking comb-plates on one side. Time-lapse video demonstrated that waves of cytoplasmic reorganisation spread through the layer of peripheral cytoplasm (ectoplasm) of the egg during the 80 minute period between pronuclear fusion and first cleavage, along the future oral-aboral axis. These waves are manifest as the progressive displacement and dispersal of plaques of accumulated organelles around supernumerary sperm nuclei, and a series of surface movements. Their timing and direction of propagation suggest they may be involved in establishing cytoplasmic differences with respect to the embryonic axis. Inhibitor experiments suggested that the observed cytoplasmic reorganisation involves microtubules. Nocodazole and taxol, which prevent microtubule turnover,blocked plaque dispersal and reduced surface movements. The microfilament-disrupting drug cytochalasin B did not prevent plaque dispersal but induced abnormal surface contractions. We examined changes in microtubule organisation using immunofluorescence on eggs fixed at different times and in live eggs following injection of rhodamine-tubulin. Giant microtubule asters become associated with each male pronucleus after the end of meiosis. Following pronuclear fusion they disappear successively, those nearest the zygote nucleus shrinking first, to establish gradients of aster size within single eggs. Regional differences in microtubule behaviour around the time of mitosis were revealed by brief taxol treatment, which induced the formation of small

  8. In vitro assembly of plant tubulin in the absence of microtubule-stabilizing reagents

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    The assembly of microtubules is essential for physiological functions of microtubules. Addition of microtubule-stabilizing reagents or microtubule "seeds" is usually necessary for plant tubulin assembly in vitro, which hinders the investigation of plant microtubule dynamics. In the present note, highly purified plant tubulins have been obtained from lily pollen, a non-microtubule-stabilizing reagent or microtubule "seed" system for plant tubulin assembly has been established and the analysis of plant tubulin assembly performed. Experiment results showed that purified tubulin polymerized in vitro, and a typical microtubule structure was observed with electron microscopy. The kinetics curve of tubulin assembly exhibited typical "parabola". The presence of taxol significantly altered the character of plant tubulin assembly, including that abnormal microtubules were assembled and the critical concentration for plant tubulin assembly was decreased exceedingly from 3 mg/mL in the absence of taxol to 0.043 mg/mL in the presence of taxol.

  9. Molecular and Mechanical Causes of Microtubule Catastrophe and Aging.

    Science.gov (United States)

    Zakharov, Pavel; Gudimchuk, Nikita; Voevodin, Vladimir; Tikhonravov, Alexander; Ataullakhanov, Fazoil I; Grishchuk, Ekaterina L

    2015-12-15

    Tubulin polymers, microtubules, can switch abruptly from the assembly to shortening. These infrequent transitions, termed "catastrophes", affect numerous cellular processes but the underlying mechanisms are elusive. We approached this complex stochastic system using advanced coarse-grained molecular dynamics modeling of tubulin-tubulin interactions. Unlike in previous simplified models of dynamic microtubules, the catastrophes in this model arise owing to fluctuations in the composition and conformation of a growing microtubule tip, most notably in the number of protofilament curls. In our model, dynamic evolution of the stochastic microtubule tip configurations over a long timescale, known as the system's "aging", gives rise to the nonexponential distribution of microtubule lifetimes, consistent with experiment. We show that aging takes place in the absence of visible changes in the microtubule wall or tip, as this complex molecular-mechanical system evolves slowly and asymptotically toward the steady-state level of the catastrophe-promoting configurations. This new, to our knowledge, theoretical basis will assist detailed mechanistic investigations of the mechanisms of action of different microtubule-binding proteins and drugs, thereby enabling accurate control over the microtubule dynamics to treat various pathologies. PMID:26682815

  10. Anti-Microtubule Drugs.

    Science.gov (United States)

    Florian, Stefan; Mitchison, Timothy J

    2016-01-01

    Small molecule drugs that target microtubules (MTs), many of them natural products, have long been important tools in the MT field. Indeed, tubulin (Tb) was discovered, in part, as the protein binding partner of colchicine. Several anti-MT drug classes also have important medical uses, notably colchicine, which is used to treat gout, familial Mediterranean fever (FMF), and pericarditis, and the vinca alkaloids and taxanes, which are used to treat cancer. Anti-MT drugs have in common that they bind specifically to Tb in the dimer, MT or some other form. However, their effects on polymerization dynamics and on the human body differ markedly. Here we briefly review the most-studied molecules, and comment on their uses in basic research and medicine. Our focus is on practical applications of different anti-MT drugs in the laboratory, and key points that users should be aware of when designing experiments. We also touch on interesting unsolved problems, particularly in the area of medical applications. In our opinion, the mechanism by which any MT drug cures or treats any disease is still unsolved, despite decades of research. Solving this problem for particular drug-disease combinations might open new uses for old drugs, or provide insights into novel routes for treatment. PMID:27193863

  11. Microtubules Are Essential for Guard-Cell Function in Vicia and Arabidopsis

    Institute of Scientific and Technical Information of China (English)

    William Eisinger; David Ehrhardt; Winslow Briggs

    2012-01-01

    Radially arranged cortical microtubules are a prominent feature of guard cells.Guard cells expressing GFPtubulin showed consistent changes in the appearance of microtubules when stomata opened or closed.Guard cells showed fewer microtubule structures as stomata closed,whether induced by transfer to darkness,ABA,hydrogen peroxide,or sodium hydrogen carbonate.Guard cells kept in the dark (closed stomata) showed increases in microtubule structures and stomatal aperture on light treatment.GFP-EB1,marking microtubule growing plus ends,showed no change in number of plus ends or velocity of assembly on stomatal closure.Since the number of growing plus ends and the rate of plus-end growth did not change when microtubule structure numbers declined,microtubule instability and/or rearrangement must be responsible for the apparent loss of microtubules.Guard cells with closed stomata showed more cytosolic GFP-fluorescence than those with open stomata as cortical microtubules became disassembled,although with a large net loss in total fluorescence.Microtubule-targeted drugs blocked guard-cell function in Vicia and Arabidopsis.Oryzalin disrupted guard-cell microtubules and prevented stomatal opening and taxol stabilized guard-cell microtubules and delayed stomatal closure.Gas exchange measurements indicated that the transgenes for fluorescent-labeled proteins did not disrupt normal stomatal function.These dynamic changes in guard-cell microtubules combined with our inhibitor studies provide evidence for an active role of microtubules in guard-cell function.

  12. Micromechanical modeling of microtubules

    OpenAIRE

    Arslan, Melis

    2010-01-01

    Microtubules serve as one of the structural components of the cell and take place in some of the important cellular functions such as mitosis and vesicular transport. Microtubules comprise of tubulin subunits tubulin dimers arranged in a cylindrical beta and formed by alpha hollow tube structure with a diameter of 20nm. They are typically comprised of 13 or 14 protofilaments arranged in spiral configurations. The longitudinal bonds between the tubulin dimers are much stiffer and stronger than...

  13. Multiscale modeling and simulation of microtubule-motor-protein assemblies

    Science.gov (United States)

    Gao, Tong; Blackwell, Robert; Glaser, Matthew A.; Betterton, M. D.; Shelley, Michael J.

    2015-12-01

    Microtubules and motor proteins self-organize into biologically important assemblies including the mitotic spindle and the centrosomal microtubule array. Outside of cells, microtubule-motor mixtures can form novel active liquid-crystalline materials driven out of equilibrium by adenosine triphosphate-consuming motor proteins. Microscopic motor activity causes polarity-dependent interactions between motor proteins and microtubules, but how these interactions yield larger-scale dynamical behavior such as complex flows and defect dynamics is not well understood. We develop a multiscale theory for microtubule-motor systems in which Brownian dynamics simulations of polar microtubules driven by motors are used to study microscopic organization and stresses created by motor-mediated microtubule interactions. We identify polarity-sorting and crosslink tether relaxation as two polar-specific sources of active destabilizing stress. We then develop a continuum Doi-Onsager model that captures polarity sorting and the hydrodynamic flows generated by these polar-specific active stresses. In simulations of active nematic flows on immersed surfaces, the active stresses drive turbulent flow dynamics and continuous generation and annihilation of disclination defects. The dynamics follow from two instabilities, and accounting for the immersed nature of the experiment yields unambiguous characteristic length and time scales. When turning off the hydrodynamics in the Doi-Onsager model, we capture formation of polar lanes as observed in the Brownian dynamics simulation.

  14. Single molecule imaging reveals differences in microtubule track selection between Kinesin motors.

    Directory of Open Access Journals (Sweden)

    Dawen Cai

    2009-10-01

    Full Text Available Cells generate diverse microtubule populations by polymerization of a common alpha/beta-tubulin building block. How microtubule associated proteins translate microtubule heterogeneity into specific cellular functions is not clear. We evaluated the ability of kinesin motors involved in vesicle transport to read microtubule heterogeneity by using single molecule imaging in live cells. We show that individual Kinesin-1 motors move preferentially on a subset of microtubules in COS cells, identified as the stable microtubules marked by post-translational modifications. In contrast, individual Kinesin-2 (KIF17 and Kinesin-3 (KIF1A motors do not select subsets of microtubules. Surprisingly, KIF17 and KIF1A motors that overtake the plus ends of growing microtubules do not fall off but rather track with the growing tip. Selection of microtubule tracks restricts Kinesin-1 transport of VSVG vesicles to stable microtubules in COS cells whereas KIF17 transport of Kv1.5 vesicles is not restricted to specific microtubules in HL-1 myocytes. These results indicate that kinesin families can be distinguished by their ability to recognize microtubule heterogeneity. Furthermore, this property enables kinesin motors to segregate membrane trafficking events between stable and dynamic microtubule populations.

  15. CYLD Regulates Noscapine Activity in Acute Lymphoblastic Leukemia via a Microtubule-Dependent Mechanism

    Science.gov (United States)

    Yang, Yunfan; Ran, Jie; Sun, Lei; Sun, Xiaodong; Luo, Youguang; Yan, Bing; Tala; Liu, Min; Li, Dengwen; Zhang, Lei; Bao, Gang; Zhou, Jun

    2015-01-01

    Noscapine is an orally administrable drug used worldwide for cough suppression and has recently been demonstrated to disrupt microtubule dynamics and possess anticancer activity. However, the molecular mechanisms regulating noscapine activity remain poorly defined. Here we demonstrate that cylindromatosis (CYLD), a microtubule-associated tumor suppressor protein, modulates the activity of noscapine both in cell lines and in primary cells of acute lymphoblastic leukemia (ALL). Flow cytometry and immunofluorescence microscopy reveal that CYLD increases the ability of noscapine to induce mitotic arrest and apoptosis. Examination of cellular microtubules as well as in vitro assembled microtubules shows that CYLD enhances the effect of noscapine on microtubule polymerization. Microtubule cosedimentation and fluorescence titration assays further reveal that CYLD interacts with microtubule outer surface and promotes noscapine binding to microtubules. These findings thus demonstrate CYLD as a critical regulator of noscapine activity and have important implications for ALL treatment. PMID:25897332

  16. Estimation of broadband emissivity (8-12 um) from ASTER data by using RM-NN.

    Science.gov (United States)

    Mao, K B; Ma, Y; Shen, X Y; Li, B P; Li, C Y; Li, Z L

    2012-08-27

    Land surface window emissivity is a key parameter for estimating the longwave radiative budget. The combined radiative transfer model (RM) with neural network (NN) algorithm is utilized to directly estimate the window (8-12 um) emissivity from the brightness temperature of the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) with 90 m spatial resolution. Although the estimation accuracy is very high when the broadband emissivity is estimated from AST05 (ASTER Standard Data Product) by using regression method, the accuracy of AST05 is about ± 0.015 for 86 spectra which is determined by the atmosphere correction for ASTER 1B data. The MODTRAN 4 is used to simulate the process of radiance transfer, and the broadband emissivity is directly estimated from the brightness temperature of ASTER 1B data at satellite. The comparison analysis indicates that the RM-NN is more competent to estimate broadband emissivity than other method when the brightness temperatures of band 11, 12, 13, 14 are made as input nodes of dynamic neural network. The estimation average accuracy is about 0.009, and the estimation results are not sensitive to instrument noise. The RM-NN is applied to extract broadband emissivity from an image of ASTER 1B data in China, and the comparison against a classification based multiple bands with 15 m spatial resolution shows that the estimation results from RM-NN are very good. PMID:23037062

  17. Low-dose laulimalide represents a novel molecular probe for investigating microtubule organization.

    Science.gov (United States)

    Bennett, Melissa J; Chan, Gordon K; Rattner, J B; Schriemer, David C

    2012-08-15

    Laulimalide is a natural product that has strong taxoid-like properties but binds to a distinct site on β-tubulin in the microtubule (MT) lattice. At elevated concentrations, it generates MTs that are resistant to depolymerization, and it induces a conformational state indistinguishable from taxoid-treated MTs. In this study, we describe the effect of low-dose laulimalide on various stages of the cell cycle and compare these effects to docetaxel as a representative of taxoid stabilizers. No evidence of MT bundling in interphase was observed with laulimalide, in spite of the fact that MTs are stabilized at low dose. Cells treated with laulimalide enter mitosis but arrest at prometaphase by generating multiple asters that coalesce into supernumerary poles and interfere with the integrity of the metaphase plate. Cells with a preformed bipolar spindle exist under heightened tension under laulimalide treatment, and chromosomes rapidly shear from the plate, even though the bipolar spindle is well-preserved. Docetaxel generates a similar phenotype for HeLa cells entering mitosis, but when treated at metaphase, cells undergo chromosomal fragmentation and demonstrate reduced centromere dynamics, as expected for a taxoid. Our results suggest that laulimalide represents a new class of molecular probe for investigating MT-mediated events, such as kinetochore-MT interactions, which may reflect the location of the ligand binding site within the interprotofilament groove. PMID:22871740

  18. A coarse-grained model of microtubule self-assembly

    Science.gov (United States)

    Regmi, Chola; Cheng, Shengfeng

    Microtubules play critical roles in cell structures and functions. They also serve as a model system to stimulate the next-generation smart, dynamic materials. A deep understanding of their self-assembly process and biomechanical properties will not only help elucidate how microtubules perform biological functions, but also lead to exciting insight on how microtubule dynamics can be altered or even controlled for specific purposes such as suppressing the division of cancer cells. Combining all-atom molecular dynamics (MD) simulations and the essential dynamics coarse-graining method, we construct a coarse-grained (CG) model of the tubulin protein, which is the building block of microtubules. In the CG model a tubulin dimer is represented as an elastic network of CG sites, the locations of which are determined by examining the protein dynamics of the tubulin and identifying the essential dynamic domains. Atomistic MD modeling is employed to directly compute the tubulin bond energies in the surface lattice of a microtubule, which are used to parameterize the interactions between CG building blocks. The CG model is then used to study the self-assembly pathways, kinetics, dynamics, and nanomechanics of microtubules.

  19. Kinks and bell-type solitons in microtubules.

    Science.gov (United States)

    Zdravković, Slobodan; Gligorić, Goran

    2016-06-01

    In the present paper, we study the nonlinear dynamics of microtubules relying on the known u-model. As a mathematical procedure, we use the simplest equation method. We recover some solutions obtained earlier using less general methods. These are kink solitons. In addition, we show that the solution of the crucial differential equation, describing nonlinear dynamics of microtubules, can be a bell-type soliton. The discovery of this new solution is supported by numerical analysis. PMID:27368766

  20. Kinks and bell-type solitons in microtubules

    Science.gov (United States)

    Zdravković, Slobodan; Gligorić, Goran

    2016-06-01

    In the present paper, we study the nonlinear dynamics of microtubules relying on the known u-model. As a mathematical procedure, we use the simplest equation method. We recover some solutions obtained earlier using less general methods. These are kink solitons. In addition, we show that the solution of the crucial differential equation, describing nonlinear dynamics of microtubules, can be a bell-type soliton. The discovery of this new solution is supported by numerical analysis.

  1. Onboard Calibration Trends of ASTER/TIR

    OpenAIRE

    Sakuma, F.; Kikuchi, M.; Ono, H.

    2012-01-01

    The ASTER Instrument is one of the five sensors on the NASA’s Terra satellite on orbit since December 1999. ASTER consists of three radiometers, VNIR, SWIR and TIR whose spatial resolutions are 15 m, 30 m and 90 m, respectively. Unfortunately SWIR stopped taking pictures since May 2008 due to the offset rise caused by the cooler temperature rise, but VNIR and TIR are taking Earth pictures of good quality. TIR has five bands whose center wavelengths are 8.3 mm, 8.6 mm, 9.1 mm, 10.6 mm and 11.1...

  2. Assessing Mesoscale Volcanic Aviation Hazards using ASTER

    Science.gov (United States)

    Pieri, D.; Gubbels, T.; Hufford, G.; Olsson, P.; Realmuto, V.

    2006-12-01

    The Advanced Spaceborne Thermal Emission and Reflection (ASTER) imager onboard the NASA Terra Spacecraft is a joint project of the Japanese Ministry for Economy, Trade, and Industry (METI) and NASA. ASTER has acquired over one million multi-spectral 60km by 60 km images of the earth over the last six years. It consists of three sub-instruments: (a) a four channel VNIR (0.52-0.86um) imager with a spatial resolution of 15m/pixel, including three nadir-viewing bands (1N, 2N, 3N) and one repeated rear-viewing band (3B) for stereo-photogrammetric terrain reconstruction (8-12m vertical resolution); (b) a SWIR (1.6-2.43um) imager with six bands at 30m/pixel; and (c) a TIR (8.125-11.65um) instrument with five bands at 90m/pixel. Returned data are processed in Japan at the Earth Remote Sensing Data Analysis Center (ERSDAC) and at the Land Processes Distributed Active Archive Center (LP DAAC), located at the USGS Center for Earth Resource Observation and Science (EROS) in Sioux Falls, South Dakota. Within the ASTER Project, the JPL Volcano Data Acquisition and Analyses System (VDAAS) houses over 60,000 ASTER volcano images of 1542 volcanoes worldwide and will be accessible for downloads by the general public and on-line image analyses by researchers in early 2007. VDAAS multi-spectral thermal infrared (TIR) de-correlation stretch products are optimized for volcanic ash detection and have a spatial resolution of 90m/pixel. Digital elevation models (DEM) stereo-photogrammetrically derived from ASTER Band 3B/3N data are also available within VDAAS at 15 and 30m/pixel horizontal resolution. Thus, ASTER visible, IR, and DEM data at 15-100m/pixel resolution within VDAAS can be combined to provide useful boundary conditions on local volcanic eruption plume location, composition, and altitude, as well as on topography of underlying terrain. During and after eruptions, low- altitude winds and ash transport can be affected by topography, and other orographic thermal and water vapor

  3. Metallic Glass Wire Based Localization of Kinesin/Microtubule Bio-molecular Motility System

    Science.gov (United States)

    Kim, K.; Sikora, A.; Yaginuma, S.; Nakayama, K. S.; Nakazawa, H.; Umetsu, M.; Hwang, W.; Teizer, W.

    2014-03-01

    We report electrophoretic accumulation of microtubules along metallic glass (Pd42.5Cu30Ni7.5P20) wires free-standing in solution. Microtubules are dynamic cytoskeletal filaments. Kinesin is a cytoskeletal motor protein. Functions of these bio-molecules are central to various dynamic cellular processes. Functional artificial organization of bio-molecules is a prerequisite for transferring their native functions into device applications. Fluorescence microscopy at the individual-microtubule level reveals microtubules aligning along the wire axis during the electrophoretic migration. Casein-treated electrodes are effective for releasing trapped microtubules upon removal of the external field. Furthermore, we demonstrate gliding motion of microtubules on kinesin-treated metallic glass wires. The reversible manner in the local adsorption of microtubules, the flexibility of wire electrodes, and the compatibility between the wire electrode and the bio-molecules are beneficial for spatio-temporal manipulation of the motility machinery in 3 dimensions.

  4. Microtubule's conformational cap

    DEFF Research Database (Denmark)

    Chretien, D.; Janosi, I.; Taveau, J.C.;

    1999-01-01

    The molecular mechanisms that allow elongation of the unstable microtubule lattice remain unclear. It is usually thought that the GDP-liganded tubulin lattice is capped by a small layer of GTP- or GDP-P(i)-liganded molecules, the so called "GTP-cap". Here, we point-out that the elastic properties...

  5. Protein 4.1R binds to CLASP2 and regulates dynamics,organization and attachment of microtubules to the cell cortex

    NARCIS (Netherlands)

    A. Ruiz-Saenz (Ana); J. van Haren (Jeffrey); C.L. Sayas (C. Laura); L. Rangel (Laura); J.A.A. Demmers (Jeroen); J. Millán (Jaime); M.A. Alonso (Miguel); N.J. Galjart (Niels); J.M. Correas

    2013-01-01

    textabstractThe microtubule (MT) cytoskeleton is essential for many cellular processes, including cell polarity and migration. Cortical platforms, formed by a subset of MT plus-end-tracking proteins, such as CLASP2, and non-MT binding proteins such as LL5b, attach distal ends of MTs to the cell cort

  6. A New Diterpenoid Glucoside from Aster smithianus

    Institute of Scientific and Technical Information of China (English)

    Shou Jun GUO; Xing Hua ZHAO; Dong Liang CHENG

    2004-01-01

    A new diterpenoid trisaccharide, smithoside A, was isolated from Aster smithianus. Its structure was identified as pimar-15 (16)-β-en-3β, 8β, 1 1α-triol-3-O-β-D-glucopyranosyl (l→3)-[β-glucopyranosyl (1→2)]-β-D-glucopyranoside on the basis of the spectral and chemical methods.

  7. Tubulin bond energies and microtubule biomechanics determined from nanoindentation in silico

    CERN Document Server

    Kononova, Olga; Theisen, Kelly E; Marx, Kenneth A; Dima, Ruxandra I; Ataullakhanov, Fazly I; Grishchuk, Ekaterina L; Barsegov, Valeri

    2015-01-01

    Microtubules, the primary components of the chromosome segregation machinery, are stabilized by longitudinal and lateral non-covalent bonds between the tubulin subunits. However, the thermodynamics of these bonds and the microtubule physico-chemical properties are poorly understood. Here, we explore the biomechanics of microtubule polymers using multiscale computational modeling and nanoindentations in silico of a contiguous microtubule fragment. A close match between the simulated and experimental force-deformation spectra enabled us to correlate the microtubule biomechanics with dynamic structural transitions at the nanoscale. Our mechanical testing revealed that the compressed MT behaves as a system of rigid elements interconnected through a network of lateral and longitudinal elastic bonds. The initial regime of continuous elastic deformation of the microtubule is followed by the transition regime, during which the microtubule lattice undergoes discrete structural changes, which include first the reversib...

  8. Asymmetric behavior of severed microtubule ends after ultraviolet-microbeam irradiation of individual microtubules in vitro

    Energy Technology Data Exchange (ETDEWEB)

    Walker, R.A.; Inoue, S.; Salmon, E.D.

    1989-03-01

    The molecular basis of microtubule dynamic instability is controversial, but is thought to be related to a GTP cap. A key prediction of the GTP cap model is that the proposed labile GDP-tubulin core will rapidly dissociate if the GTP-tubulin cap is lost. We have tested this prediction by using a UV microbeam to cut the ends from elongating microtubules. Phosphocellulose-purified tubulin was assembled onto the plus and minus ends of sea urchin flagellar axoneme fragments at 21-22 degrees C. The assembly dynamics of individual microtubules were recorded in real time using video microscopy. When the tip of an elongating plus end microtubule was cut off, the severed plus end microtubule always rapidly shortened back to the axoneme at the normal plus end rate. However, when the distal tip of an elongating minus end microtubule was cut off, no rapid shortening occurred. Instead, the severed minus end resumed elongation at the normal minus end rate. Our results show that some form of stabilizing cap, possibly a GTP cap, governs the transition (catastrophe) from elongation to rapid shortening at the plus end. At the minus end, a simple GTP cap is not sufficient to explain the observed behavior unless UV induces immediate recapping of minus, but not plus, ends. Another possibility is that a second step, perhaps a structural transformation, is required in addition to GTP cap loss for rapid shortening to occur. This transformation would be favored at plus, but not minus ends, to account for the asymmetric behavior of the ends.

  9. A thermodynamic model of microtubule assembly and disassembly.

    Directory of Open Access Journals (Sweden)

    Bernard M A G Piette

    Full Text Available Microtubules are self-assembling polymers whose dynamics are essential for the normal function of cellular processes including chromosome separation and cytokinesis. Therefore understanding what factors effect microtubule growth is fundamental to our understanding of the control of microtubule based processes. An important factor that determines the status of a microtubule, whether it is growing or shrinking, is the length of the GTP tubulin microtubule cap. Here, we derive a Monte Carlo model of the assembly and disassembly of microtubules. We use thermodynamic laws to reduce the number of parameters of our model and, in particular, we take into account the contribution of water to the entropy of the system. We fit all parameters of the model from published experimental data using the GTP tubulin dimer attachment rate and the lateral and longitudinal binding energies of GTP and GDP tubulin dimers at both ends. Also we calculate and incorporate the GTP hydrolysis rate. We have applied our model and can mimic published experimental data, which formerly suggested a single layer GTP tubulin dimer microtubule cap, to show that these data demonstrate that the GTP cap can fluctuate and can be several microns long.

  10. Crop Residue Coverage Estimation Using ASTER Imagery

    Science.gov (United States)

    Lewis, D.; Yao, H.; Kincaid, R.

    2006-12-01

    Soil erosion and its related runoff is a serious problem in U.S. agriculture. USDA has classified 33 percent of U.S. agricultural land as being highly erodible. It is well recognized that residue coverage on the soil surface can reduce soil erosion. The National Food Security Act of 1985 requires that agricultural producers protect all highly erodible cropland from excessive erosion. The 2002 Farm Bill gave U.S. Department of Agriculture's (USDA) Natural Resource Conservation Service (NRCS) the authority to make a determination of compliance. NRCS is currently running several programs to implement conservation practices and to monitor compliance. To be in compliance, growers must keep crop residue cover more than 30 percent of the field. This requires field-level assessment. The NRCS does not have the resources to regularly survey every field. One potential approach for compliance decision making is using data from the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) sensor onboard NASA's Terra satellite. ASTER data provides 15 bands of 15 meter visible/NIR (VNIR) and 30 meter SWIR resolution data. Both the spatial resolution and spectral wavelength range and resolution are suitable for field level residue cover estimation. The objective of this study was to explore the potential of using ASTER data for crop residue cover estimation. The results indicate that ASTER imagery has good capability to identify residue within the corn fields and moderate capability in soybean residue estimation. SWIR bands have the most promise in separating crop residue when compared to the VNIR bands. Satellite based remote sensing imagery could be a potential rapid decision making tool for NRCS's compliance programs.

  11. Direct Microtubule-Binding by Myosin-10 Orients Centrosomes toward Retraction Fibers and Subcortical Actin Clouds.

    Science.gov (United States)

    Kwon, Mijung; Bagonis, Maria; Danuser, Gaudenz; Pellman, David

    2015-08-10

    Positioning of centrosomes is vital for cell division and development. In metazoan cells, spindle positioning is controlled by a dynamic pool of subcortical actin that organizes in response to the position of retraction fibers. These actin "clouds" are proposed to generate pulling forces on centrosomes and mediate spindle orientation. However, the motors that pull astral microtubules toward these actin structures are not known. Here, we report that the unconventional myosin, Myo10, couples actin-dependent forces from retraction fibers and subcortical actin clouds to centrosomes. Myo10-mediated centrosome positioning requires its direct microtubule binding. Computational image analysis of large microtubule populations reveals a direct effect of Myo10 on microtubule dynamics and microtubule-cortex interactions. Myo10's role in centrosome positioning is distinct from, but overlaps with, that of dynein. Thus, Myo10 plays a key role in integrating the actin and microtubule cytoskeletons to position centrosomes and mitotic spindles. PMID:26235048

  12. Mechanical Models of Microtubule Bundle Collapse in Alzheimer's Disease

    Science.gov (United States)

    Sendek, Austin; Singh, Rajiv; Cox, Daniel

    2013-03-01

    Amyloid-beta aggregates initiate Alzheimer's disease, and downstream trigger degradation of tau proteins that act as microtubule bundle stabilizers and mechanical spacers. Currently it is unclear which of tau cutting by proteases, tau phosphorylation, or tau aggregation are responsible for cytoskeleton degradation., We construct a percolation simulation of the microtubule bundle using a molecular spring model for the taus and including depletion force attraction between microtubules and membrane/actin cytoskeletal surface tension. The simulation uses a fictive molecular dynamics to model the motion of the individual microtubules within the bundle as a result of random tau removal, and calculates the elastic modulus of the bundle as the tau concentration falls. We link the tau removal steps to kinetic tau steps in various models of tau degradation. Supported by US NSF Grant DMR 1207624

  13. Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER)

    Data.gov (United States)

    National Aeronautics and Space Administration — This dataset represents multiple products archived at the Land Processes DAAC for ASTER (Advanced Spaceborne Thermal Emission and Reflection Radiometer) aboard the...

  14. Getting a Grip on Microtubules.

    Science.gov (United States)

    Schaletzky, Julia; Rape, Michael

    2016-02-25

    Posttranslational modifications control microtubule behavior, yet assigning roles to particular signals was hampered by lack of defined in vitro systems. In this issue of Cell, Valenstein and Roll-Mecak establish a biochemical platform to interrogate consequences of microtubule polyglutamylation, thereby providing important insights into the specificity and quantitative nature of cellular information transfer. PMID:26919420

  15. Microtubule regulation of corneal fibroblast morphology and mechanical activity in 3-D culture

    OpenAIRE

    Kim, Areum; Petroll, W. Matthew

    2007-01-01

    The purpose of this study was to investigate the role of microtubules in regulating corneal fibroblast structure and mechanical behavior using static (3-D) and dynamic (4-D) imaging of both cells and their surrounding matrix. Human corneal fibroblasts transfected to express GFP-zyxin (to label focal adhesions) or GFP-tubulin (to label microtubules) were plated at low density inside 100 μm thick type I collagen matrices. After 24 hours, the effects of nocodazole (to depolymerize microtubules),...

  16. The Microtubule-Associated Protein END BINDING1 Modulates Membrane Trafficking Pathways in Plant Root Cells

    OpenAIRE

    Shahidi, Saeid

    2013-01-01

    EB1 protein preferentially binds to the fast growing ends of microtubules where it regulates microtubule dynamics. In addition to microtubules, EB1 interacts with several additional proteins, and through these interactions modulates various cellular processes. Arabidopsis thaliana eb1 mutants have roots that exhibit aberrant responses to touch/gravity cues. Columella cells in the centre of the root cap are polarized and play key roles in these responses by functioning as sensors.I examined th...

  17. Polyglutamylated Tubulin Binding Protein C1orf96/CSAP Is Involved in Microtubule Stabilization in Mitotic Spindles

    Science.gov (United States)

    Ohta, Shinya; Hamada, Mayako; Sato, Nobuko; Toramoto, Iyo

    2015-01-01

    The centrosome-associated C1orf96/Centriole, Cilia and Spindle-Associated Protein (CSAP) targets polyglutamylated tubulin in mitotic microtubules (MTs). Loss of CSAP causes critical defects in brain development; however, it is unclear how CSAP association with MTs affects mitosis progression. In this study, we explored the molecular mechanisms of the interaction of CSAP with mitotic spindles. Loss of CSAP caused MT instability in mitotic spindles and resulted in mislocalization of Nuclear protein that associates with the Mitotic Apparatus (NuMA), with defective MT dynamics. Thus, CSAP overload in the spindles caused extensive MT stabilization and recruitment of NuMA. Moreover, MT stabilization by CSAP led to high levels of polyglutamylation on MTs. MT depolymerization by cold or nocodazole treatment was inhibited by CSAP binding. Live-cell imaging analysis suggested that CSAP-dependent MT-stabilization led to centrosome-free MT aster formation immediately upon nuclear envelope breakdown without γ-tubulin. We therefore propose that CSAP associates with MTs around centrosomes to stabilize MTs during mitosis, ensuring proper bipolar spindle formation and maintenance. PMID:26562023

  18. Creating improved ASTER DEMs over glacierized terrain

    Science.gov (United States)

    Raup, B. H.; Khalsa, S. S.; Armstrong, R.

    2006-12-01

    Digital elevation models (DEMs) produced from ASTER stereo imagery over glacierized terrain frequently contain data voids, which some software packages fill by interpolation. Even when interpolation is applied, the results are often not accurate enough for studies of glacier thickness changes. DEMs are created by automatic cross-correlation between the image pairs, and rely on spatial variability in the digital number (DN) values for this process. Voids occur in radiometrically homogeneous regions, such as glacier accumulation areas covered with uniform snow, due to lack of correlation. The same property that leads to lack of correlation makes possible the derivation of elevation information from photoclinometry, also known as shape-from-shading. We demonstrate a technique to produce improved DEMs from ASTER data by combining the results from conventional cross-correlation DEM-generation software with elevation information produced from shape-from-shading in the accumulation areas of glacierized terrain. The resulting DEMs incorporate more information from the imagery, and the filled voids more accurately represent the glacier surface. This will allow for more accurate determination of glacier hypsometry and thickness changes, leading to better predictions of response to climate change.

  19. The octarepeat region of hamster PrP (PrP51-91) enhances the formation of microtubule and antagonize Cu~(2+)-induced microtubule-disrupting activity

    Institute of Scientific and Technical Information of China (English)

    Xiaoli Li; Chenfang Dong; Song Shi; Guirong Wang; Yuan Li; Xin Wang; Qi Shi; Chan Tian; Ruimin Zhou; Chen Gao; Xiaoping Dong

    2009-01-01

    Prion protein (PrP) is considered to associate with microtubule and its major component, tubulin. In the present study, octarepeat region of PrP (PrP51-91) was expressed in prokaryotic-expressing system. Using GST pull-down assay and co-immunoprecipitation, the mol-ecular interaction between PrP51-91 and tubulin was observed. Our data also demonstrated that PrP51-91 could efficiently stimulate microtubule assembly in vitro, indicating a potential effect of PrP on microtu-bule dynamics. Moreover, PrP51-91 was confirmed to be able to antagonize Cu~(2+)-induced microtubule-disrupt-ing activity in vivo, partially protecting against Cu~(2+) intoxication to culture cells and stabilize cellular micro-tubule structure. The association of the octarepeat region of PrP with tubulin may further provide insight into the biological function of PrP in the neurons.

  20. ASTER system operating achievement for 15 years on orbit

    Science.gov (United States)

    Inada, Hitomi; Ito, Yoshiyuki; Kikuchi, Masakuni; Sakuma, Fumihiro; Tatsumi, Kenji; Akagi, Shigeki; Ono, Hidehiko

    2015-10-01

    ASTER (Advanced Spaceborne Thermal Emission and Reflection Radiometer) System is operating more than 15 years since launched on board of NASA's Terra spacecraft in December 1999. ASTER System is composed of 3 radiometers (VNIR (Visible and Near Infrared Radiometer), SWIR (Short-Wave Infrared Radiometer), and TIR (Thermal Infrared Radiometer)), CSP (Common Signal Processor) and MSP (Master Power Supply). This paper describes the ASTER System operating history and the achievement of ASTER System long term operation since the initial checkout operation, the normal operation, and the continuous operation. Through the 15 years operation, ASTER system had totally checked the all subsystems (MPS, VNIR, TIR, SWIR, and CSP) health and safety check using telemetry data trend evaluation, and executed the necessary action. The watch items are monitored as the life control items. The pointing mechanics for VNIR, SWIR and TIR, and the cooler for SWIR and TIR are all operating with any problem for over 15 years. In 2003, ASTER was successfully operated for the lunar calibration. As the future plan, ASTER team is proposing the 2nd lunar calibration before the end of mission.

  1. The Membrane-Associated Sec1/Munc18 KEULE is Required for Phragmoplast Microtubule Reorganization During Cytokinesis in Arabidopsis.

    Science.gov (United States)

    Steiner, Alexander; Müller, Lin; Rybak, Katarzyna; Vodermaier, Vera; Facher, Eva; Thellmann, Martha; Ravikumar, Raksha; Wanner, Gerhard; Hauser, Marie-Theres; Assaad, Farhah F

    2016-04-01

    Cytokinesis, the partitioning of the cytoplasm following nuclear division, requires extensive coordination between membrane trafficking and cytoskeletal dynamics. In plants, the onset of cytokinesis is characterized by the assembly of a bipolar microtubule array, the phragmoplast, and of a transient membrane compartment, the cell plate. Little is known about the coordination between membrane deposition at the cell plate and the dynamics of phragmoplast microtubules. In this study, we monitor the localization dynamics of microtubule and membrane markers throughout cytokinesis. Our spatiotemporal resolution is consistent with the general view that microtubule dynamics drive membrane movements. Nonetheless, we provide evidence for active sorting at the cell plate and show that this is, at least in part, mediated by the TRAPPII tethering complex. We also characterize phragmoplast microtubule organization and cell plate formation in a suite of cytokinesis-defective mutants. Of four mutant lines with defects in phragmoplast microtubule organization, only mor1 microtubule-associated mutants exhibited aberrant cell plates. Conversely, the mutants with the strongest impairment in phragmoplast microtubule reorganization are keule alleles, which have a primary defect in membrane fusion. Our findings identify the SEC1/Munc18 protein KEULE as a central regulatory node in the coordination of membrane and microtubule dynamics during plant cytokinesis. PMID:26700031

  2. Estimating Coastal Lagoon Tidal Flooding and Repletion with Multidate ASTER Thermal Imagery

    Directory of Open Access Journals (Sweden)

    Thomas R. Allen

    2012-10-01

    Full Text Available Coastal lagoons mix inflowing freshwater and tidal marine waters in complex spatial patterns. This project sought to detect and measure temperature and spatial variability of flood tides for a constricted coastal lagoon using multitemporal remote sensing. Advanced Spaceborne Thermal Emission Radiometer (ASTER thermal infrared data provided estimates of surface temperature for delineation of repletion zones in portions of Chincoteague Bay, Virginia. ASTER high spatial resolution sea-surface temperature imagery in conjunction with in situ observations and tidal predictions helped determine the optimal seasonal data for analyses. The selected time series ASTER satellite data sets were analyzed at different tidal phases and seasons in 2004–2006. Skin surface temperatures of ocean and estuarine waters were differentiated by flood tidal penetration and ebb flows. Spatially variable tidal flood penetration was evaluated using discrete seed-pixel area analysis and time series Principal Components Analysis. Results from these techniques provide spatial extent and variability dynamics of tidal repletion, flushing, and mixing, important factors in eutrophication assessment, water quality and resource monitoring, and application of hydrodynamic modeling for coastal estuary science and management.

  3. ASTER Level 1B Registered Radiance at the Sensor

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) is an advanced multispectral imager that was launched on board NASA's Terra spacecraft in...

  4. ASTER Global Emissivity Dataset 100-meter V003 - AG100

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Advanced Spaceborne Thermal Emission and Reflection radiometer Global Emissivity Database (ASTER GED) was developed by the National Aeronautics and Space...

  5. Interactive domains in the molecular chaperone human alphaB crystallin modulate microtubule assembly and disassembly.

    Directory of Open Access Journals (Sweden)

    Joy G Ghosh

    Full Text Available Small heat shock proteins regulate microtubule assembly during cell proliferation and in response to stress through interactions that are poorly understood.Novel functions for five interactive sequences in the small heat shock protein and molecular chaperone, human alphaB crystallin, were investigated in the assembly/disassembly of microtubules and aggregation of tubulin using synthetic peptides and mutants of human alphaB crystallin.The interactive sequence (113FISREFHR(120 exposed on the surface of alphaB crystallin decreased microtubule assembly by approximately 45%. In contrast, the interactive sequences, (131LTITSSLSSDGV(142 and (156ERTIPITRE(164, corresponding to the beta8 strand and the C-terminal extension respectively, which are involved in complex formation, increased microtubule assembly by approximately 34-45%. The alphaB crystallin peptides, (113FISREFHR(120 and (156ERTIPITRE(164, inhibited microtubule disassembly by approximately 26-36%, and the peptides (113FISREFHR(120 and (131LTITSSLSSDGV(142 decreased the thermal aggregation of tubulin by approximately 42-44%. The (131LTITSSLSSDGV(142 and (156ERTIPITRE(164 peptides were more effective than the widely used anti-cancer drug, Paclitaxel, in modulating tubulinmicrotubule dynamics. Mutagenesis of these interactive sequences in wt human alphaB crystallin confirmed the effects of the alphaB crystallin peptides on microtubule assembly/disassembly and tubulin aggregation. The regulation of microtubule assembly by alphaB crystallin varied over a narrow range of concentrations. The assembly of microtubules was maximal at alphaB crystallin to tubulin molar ratios between 1:4 and 2:1, while molar ratios >2:1 inhibited microtubule assembly.Interactive sequences on the surface of human alphaB crystallin collectively modulate microtubule assembly through a dynamic subunit exchange mechanism that depends on the concentration and ratio of alphaB crystallin to tubulin. These are the first

  6. Lithologic mapping with multispectral ASTER TIR and SWIR data

    Science.gov (United States)

    Ninomiya, Yoshiki

    2004-02-01

    ASTER, launched in December, 1999, composed of three subsystems, each of which multispectrally observes the reflected or emitted radiation from the surface of the earth to space in VNIR (visible and near infrared), SWIR (shortwave infrared) and TIR (thermal infrared) wavelength regions, respectively. ASTER-VNIR has three spectral bands with a spatial resolution of 15m, and the one of which in near infrared has an along track stereo observation capability to produce high quality Digital Elevation Model (DEM). ASTER-SWIR has six spectral bands with a spatial resolution of 30m, which are mainly designed for discriminating altered minerals bearing hydroxyl group. ASTER-TIR has five spectral bands with a spatial resolution of 90m, which presents us a powerful tool for identifying quartz and carbonate minerals as well as discriminating types of silicate rocks. The author have successfully developed a robust method for detecting quartzite and carbonate rocks as well as classifying type of igneous rocks with ASTER TIR data without atmospheric corrections (Level-1B data). Here in this paper, reflectance spectra of minerals in SWIR region measured in the laboratory are analyzed to define calcite index, OH-bearing silicate index, kaolinite index and alunite index for discriminating each mineral by ASTER-SWIR. The defined indices are applied to SWIR data of ASTER Level-1B radiance at the sensor data observing Cuprite area in Nevada, USA, and the discussions are made on the results by comparing the well-known geology of the area. Also, the result of calcite index is compared with the result of applying well-characterized carbonate index defined for ASTER-TIR to clarify the strong point of each index.

  7. Disruption of cytoplasmic microtubules by ultraviolet radiation

    International Nuclear Information System (INIS)

    Ultraviolet (UV) irradiation of cultured human skin fibroblasts causes the disassembly of their microtubules. Using indirect immunofluorescence microscopy, we have now investigated whether damage to the microtubule precursor pool may contribute to the disruption of microtubules. Exposure to polychromatic UV radiation inhibits the reassembly of microtubules during cellular recovery from cold treatment. In addition, the ability of taxol to promote microtubule polymerization and bundling is inhibited in UV-irradiated cells. However, UV irradiation of taxol-pretreated cells or in situ detergent-extracted microtubules fails to disrupt the microtubule network. These data suggest that damage to dimeric tubulin, or another soluble factor(s) required for polymerization, contributes to the disassembly of microtubules in UV-irradiated human skin fibroblasts

  8. Tau mediates microtubule bundle architectures mimicking fascicles of microtubules found in the axon initial segment

    Science.gov (United States)

    Chung, Peter J.; Song, Chaeyeon; Deek, Joanna; Miller, Herbert P.; Li, Youli; Choi, Myung Chul; Wilson, Leslie; Feinstein, Stuart C.; Safinya, Cyrus R.

    2016-01-01

    Tau, an intrinsically disordered protein confined to neuronal axons, binds to and regulates microtubule dynamics. Although there have been observations of string-like microtubule fascicles in the axon initial segment (AIS) and hexagonal bundles in neurite-like processes in non-neuronal cells overexpressing Tau, cell-free reconstitutions have not replicated either geometry. Here we map out the energy landscape of Tau-mediated, GTP-dependent ‘active' microtubule bundles at 37 °C, as revealed by synchrotron SAXS and TEM. Widely spaced bundles (wall-to-wall distance Dw–w≈25–41 nm) with hexagonal and string-like symmetry are observed, the latter mimicking bundles found in the AIS. A second energy minimum (Dw–w≈16–23 nm) is revealed under osmotic pressure. The wide spacing results from a balance between repulsive forces, due to Tau's projection domain (PD), and a stabilizing sum of transient sub-kBT cationic/anionic charge–charge attractions mediated by weakly penetrating opposing PDs. This landscape would be significantly affected by charge-altering modifications of Tau associated with neurodegeneration. PMID:27452526

  9. On the Nature and Shape of Tubulin Trails: Implications on Microtubule Self-Organization

    CERN Document Server

    Glade, Nicolas

    2012-01-01

    Microtubules, major elements of the cell skeleton are, most of the time, well organized in vivo, but they can also show self-organizing behaviors in time and/or space in purified solutions in vitro. Theoretical studies and models based on the concepts of collective dynamics in complex systems, reaction-diffusion processes and emergent phenomena were proposed to explain some of these behaviors. In the particular case of microtubule spatial self-organization, it has been advanced that microtubules could behave like ants, self-organizing by 'talking to each other' by way of hypothetic (because never observed) concentrated chemical trails of tubulin that are expected to be released by their disassembling ends. Deterministic models based on this idea yielded indeed like-looking spatio-temporal self-organizing behaviors. Nevertheless the question remains of whether microscopic tubulin trails produced by individual or bundles of several microtubules are intense enough to allow microtubule self-organization at a macr...

  10. Preliminary Attitude Control Studies for the ASTER Mission

    International Nuclear Information System (INIS)

    This work discusses an attitude control study for the ASTER mission, the first Brazilian mission to the deep space. The study is part of a larger scenario that is the development of optimal trajectories to navigate in the 2001 SN263 asteroid system, together with the generation of orbit and attitude controllers for autonomous operation. The spacecraft attitude is defined from the orientation of the body reference system to the Local Vertical Local Horizontal (LVLH) of a circular orbit around the Alpha asteroid. The rotational equations of motion involve the dynamic equations, where the three angular speeds are generated from a set of three reaction wheels and the gravitational torque. The rotational kinematics is represented in the Euler angles format. The controller is developed via the linear quadratic regulator approach with output feedback. It involves the generation of a stability augmentation (SAS) loop and a tracking outer loop, with a compensator of desired structure. It was chosen the feedback of the p, q and r angular speeds in the SAS, one for each reaction wheel. In the outer loop, it was chosen a proportional integral compensator. The parameters are tuned using a numerical minimization that represents a linear quadratic cost, with weightings in the tracking error and controls. Simulations are performed with the nonlinear model. For small angle manoeuvres, the linear results with reaction wheels or thrusters are reasonable, but, for larger manoeuvres, nonlinear control techniques shall be applied, for example, the sliding mode control

  11. Tracking the Biogenesis and Inheritance of Subpellicular Microtubule in Trypanosoma brucei with Inducible YFP-α-Tubulin

    Directory of Open Access Journals (Sweden)

    Omar Sheriff

    2014-01-01

    Full Text Available The microtubule cytoskeleton forms the most prominent structural system in Trypanosoma brucei, undergoing extensive modifications during the cell cycle. Visualization of tyrosinated microtubules leads to a semiconservative mode of inheritance, whereas recent studies employing microtubule plus end tracking proteins have hinted at an asymmetric pattern of cytoskeletal inheritance. To further the knowledge of microtubule synthesis and inheritance during T. brucei cell cycle, the dynamics of the microtubule cytoskeleton was visualized by inducible YFP-α-tubulin expression. During new flagellum/flagellum attachment zone (FAZ biogenesis and cell growth, YFP-α-tubulin was incorporated mainly between the old and new flagellum/FAZ complexes. Cytoskeletal modifications at the posterior end of the cells were observed with EB1, a microtubule plus end binding protein, particularly during mitosis. Additionally, the newly formed microtubules segregated asymmetrically, with the daughter cell inheriting the new flagellum/FAZ complex retaining most of the new microtubules. Together, our results suggest an intimate connection between new microtubule formation and new FAZ assembly, consequently leading to asymmetric microtubule inheritance and cell division.

  12. ASTER satellite observations for international disaster management

    Science.gov (United States)

    Duda, K.A.; Abrams, M.

    2012-01-01

    When lives are threatened or lost due to catastrophic disasters, and when massive financial impacts are experienced, international emergency response teams rapidly mobilize to provide urgently required support. Satellite observations of affected areas often provide essential insight into the magnitude and details of the impacts. The large cost and high complexity of developing and operating satellite flight and ground systems encourages international collaboration in acquiring imagery for such significant global events in order to speed delivery of critical information to help those affected, and optimize spectral, spatial, and temporal coverage of the areas of interest. The International Charter-Space and Major Disasters was established to enable such collaboration in sensor tasking during times of crisis and is often activated in response to calls for assistance from authorized users. Insight is provided from a U.S. perspective into sensor support for Charter activations and other disaster events through a description of the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER), which has been used to support emergency situations for over a decade through its expedited tasking and near real-time data delivery capabilities. Examples of successes achieved and challenges encountered in international collaboration to develop related systems and fulfill tasking requests suggest operational considerations for new missions as well as areas for future enhancements.

  13. The plant cytoskeleton: recent advances in the study of the plant microtubule-associated proteins MAP-65, MAP-190 and the Xenopus MAP215-like protein, MOR1.

    Science.gov (United States)

    Hussey, Patrick J; Hawkins, Timothy J; Igarashi, Hisako; Kaloriti, Despina; Smertenko, Andrei

    2002-12-01

    The microtubule cytoskeleton is a dynamic filamentous structure involved in many key processes in plant cell morphogenesis including nuclear and cell division, deposition of cell wall, cell expansion, organelle movement and secretion. The principal microtubule protein is tubulin, which associates to form the wall of the tubule. In addition, various associated proteins bind microtubules either to anchor, cross-link or regulate the microtubule network within cells. Biochemical, molecular biological and genetic approaches are being successfully used to identify these microtubule-associated proteins (MAPs) in plants, and we describe recent progress on three of these proteins. PMID:12516862

  14. Taking directions: the role of microtubule-bound nucleation in the self-organization of the plant cortical array

    International Nuclear Information System (INIS)

    The highly aligned cortical microtubule array of interphase plant cells is a key regulator of anisotropic cell expansion. Recent computational and analytical work has shown that the non-equilibrium self-organization of this structure can be understood on the basis of experimentally observed collisional interactions between dynamic microtubules attached to the plasma membrane. Most of these approaches assumed that new microtubules are homogeneously and isotropically nucleated on the cortical surface. Experimental evidence, however, shows that nucleation mostly occurs from other microtubules and under specific relative angles. Here, we investigate the impact of directed microtubule-bound nucleations on the alignment process using computer simulations. The results show that microtubule-bound nucleations can increase the degree of alignment achieved, decrease the timescale of the ordering process and widen the regime of dynamic parameters for which the system can self-organize. We establish that the major determinant of this effect is the degree of co-alignment of the nucleations with the parent microtubule. The specific role of sideways branching nucleations appears to allow stronger alignment while maintaining a measure of overall spatial homogeneity. Finally, we investigate the suggestion that observed persistent rotation of microtubule domains can be explained through a handedness bias in microtubule-bound nucleations, showing that this is possible only for an extreme bias and over a limited range of parameters

  15. ASTER 15 years challenging trail on-orbit operation

    Science.gov (United States)

    Kikuchi, Masakuni; Sakuma, Fumihiro; Tatsumi, Kenji; Inada, Hitomi; Itou, Yoshiyuki; Akagi, Shigeki; Ono, Hidehiko

    2015-10-01

    The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) is a high-resolution optical sensor system that can observe in a wide region from the visible and near-infrared, the short wavelength infrared to the thermal infrared with 14 spectral bands on board of NASA's Terra spacecraft for Earth Observing System (EOS) "A mission to planet earth." ASTER achieved 5 years mission success on orbit operation normally which is the specified target after launched on December, 1999. And after through 10 years continuous orbit operation, ASTER has still operating the long life observation of extra success to be 15 years in total on December, 2014. As for ASTER instrument that is composed of 3 radiometers; the Visible and Near Infrared Radiometer (VNIR) with 3 bands, the Short Wavelength Infrared Radiometer (SWIR) with 6 bands, the Thermal Infrared Radiometer (TIR) with 5 bands, overall ASTER long life data taken by 15 years onboard operation has been reviewed from the point of view of the health and safety check by Telemetry (TLM) data trend, the function and performance evaluation by observation data trend, the onboard calibration and verification by periodic Calibration(CAL) data trend. As a result, the radiometric degradation of VNIR and TIR and the temperature rise of SWIR detector were identified as significant challenges. The countermeasure plan towards the end of mission was clarified and also the novel lessons learned was verified.

  16. Duplication in the microtubule-actin cross-linking factor 1 gene causes a novel neuromuscular condition

    DEFF Research Database (Denmark)

    Jørgensen, Louise H; Mosbech, Mai-Britt; Færgeman, Nils J;

    2014-01-01

    Spectrins and plakins are important communicators linking cytoskeletal components to each other and to cellular junctions. Microtubule-actin cross-linking factor 1 (MACF1) belongs to the spectraplakin family and is involved in control of microtubule dynamics. Complete knock out of MACF1 in mice is...

  17. APC functions at the centrosome to stimulate microtubule growth.

    Science.gov (United States)

    Lui, Christina; Ashton, Cahora; Sharma, Manisha; Brocardo, Mariana G; Henderson, Beric R

    2016-01-01

    The adenomatous polyposis coli (APC) tumor suppressor is multi-functional. APC is known to localize at the centrosome, and in mitotic cells contributes to formation of the mitotic spindle. To test whether APC contributes to nascent microtubule (MT) growth at interphase centrosomes, we employed MT regrowth assays in U2OS cells to measure MT assembly before and after nocodazole treatment and release. We showed that siRNA knockdown of full-length APC delayed both initial MT aster formation and MT elongation/regrowth. In contrast, APC-mutant SW480 cancer cells displayed a defect in MT regrowth that was unaffected by APC knockdown, but which was rescued by reconstitution of full-length APC. Our findings identify APC as a positive regulator of centrosome MT initial assembly and suggest that this process is disrupted by cancer mutations. We confirmed that full-length APC associates with the MT-nucleation factor γ-tubulin, and found that the APC cancer-truncated form (1-1309) also bound to γ-tubulin through APC amino acids 1-453. While binding to γ-tubulin may help target APC to the site of MT nucleation complexes, additional C-terminal sequences of APC are required to stimulate and stabilize MT growth. PMID:26556314

  18. A novel microtubule-modulating agent EM011 inhibits angiogenesis by repressing the HIF-1α axis and disrupting cell polarity and migration

    OpenAIRE

    Karna, Prasanthi; Rida, Padmashree C. G.; Turaga, Ravi Chakra; Gao, Jinmin; Gupta, Meenakshi; Fritz, Andreas; Werner, Erica; Yates, Clayton; Zhou, Jun; Aneja, Ritu

    2012-01-01

    Endothelial tubular morphogenesis relies on an exquisite interplay of microtubule dynamics and actin remodeling to propel directed cell migration. Recently, the dynamicity and integrity of microtubules have been implicated in the trafficking and efficient translation of the mRNA for HIF-1α (hypoxia-inducible factor), the master regulator of tumor angiogenesis. Thus, microtubule-disrupting agents that perturb the HIF-1α axis and neovascularization cascade are attractive anticancer drug candida...

  19. An Introduction to ASTER GDEM and Procedure Reading%ASTER GDEM数据介绍与程序读取

    Institute of Scientific and Technical Information of China (English)

    康晓伟; 冯钟葵

    2011-01-01

    2009年6月30日,期待已久的ASTER GDEM数据由日本经济产业省(METI)和美国航天局(NASA)共同发布,其空间分辨率达到了1弧秒×1弧秒(约30m× 30m),相比2003年NASA发布的SRTM数据有了很大的提高,并且其陆地表面覆盖率也大幅提高,达到了陆地面积的99%.本文介绍了ASTER GDEM的相关特性以及使用程序读取该数据的方法.%On 30th,June 2009,METI and NASA distributed the ASTER GDEM(Advanced Space borne Thermal Emission and Reflection Radiometer Global Digital Elevation Model). The space resolution of ASTER GDEM is 1 arc-secX 1 arc-sec(ap-proximately 30m × 30m) and the land surface coverage reached 99%, both have much greater improvement than SRTM which was distributed in 2003 by NASA. This paper introduced characteristics of ASTER GDEM and how to read the data with programming language.

  20. Microtubule as nanobioelectronic nonlinear circuit

    Directory of Open Access Journals (Sweden)

    Sekulić Dalibor L.

    2012-01-01

    Full Text Available In recent years, the use of biological molecules has offered exciting alternatives to conventional synthetic methods. Specific methods use various biological templates to direct the deposition and patterning of inorganic materials. Here we have established a new electrical model of microtubules as a biological nanoscale circuit based on polyelectrolyte features of cylindrical biopolymers. Our working hypothesis is that microtubules play an active role in sub-cellular computation and signaling via electronic and protonic conductivity and can thus be made useful in hybrid materials that offer novel electronic characteristics. We verify these hypotheses both computationally and analytically through a quantitative model based on the atomic resolution structures of the key functional proteins.

  1. A Low Affinity Ground State Conformation for the Dynein Microtubule Binding Domain*

    OpenAIRE

    McNaughton, Lynn; Tikhonenko, Irina; Banavali, Nilesh K.; LeMaster, David M.; Koonce, Michael P.

    2010-01-01

    Dynein interacts with microtubules through a dedicated binding domain that is dynamically controlled to achieve high or low affinity, depending on the state of nucleotide bound in a distant catalytic pocket. The active sites for microtubule binding and ATP hydrolysis communicate via conformational changes transduced through a ∼10-nm length antiparallel coiled-coil stalk, which connects the binding domain to the roughly 300-kDa motor core. Recently, an x-ray structure of the murine cytoplasmic...

  2. Mechanism of the mitotic kinesin CENP-E in tethering kinetochores to spindle microtubules

    OpenAIRE

    Kim, Yumi

    2009-01-01

    The mitotic kinesin CENP-E is an essential kinetochore motor that directly contributes to the capture and stabilization of spindle microtubules by kinetochores. Although it has been well established that CENP-E is essential for metaphase chromosome alignment and reduction of CENP-E leads to high rates of whole chromosome missegregation in cells, its properties as a microtubule- dependent motor, the mechanism by which CENP-E contributes to the dynamic linkage between kinetochores and spindle m...

  3. Statistical Mechanics Provides Novel Insights into Microtubule Stability and Mechanism of Shrinkage

    OpenAIRE

    Jain, Ishutesh; Inamdar, Mandar M.; Padinhateeri, Ranjith

    2015-01-01

    Author Summary Microtubules are cylindrical machines inside biological cells, and are crucial for many functions such as chromosome segregation, intra-cellular transport, and cell motility. They are made of 13 elastic filaments (protofilaments) that can be either in a straight or in a curved conformation depending on the chemical state of the constituent tubulin molecules. The interplay between these two conformations help microtubules to display a fascinating phenomenon known as “dynamic ins...

  4. Flexural Rigidity of a Single Microtubule

    Science.gov (United States)

    Takasone, Toru; Juodkazis, Saulius; Kawagishi, Yuji; Yamaguchi, Akira; Matsuo, Shigeki; Sakakibara, Hitoshi; Nakayama, Haruto; Misawa, Hiroaki

    2002-05-01

    Microtubules, which are flexible biopolymers, can be used for nanotechnology applications (e.g., nano-actuator) as they have a rigidity similar to that of plexyglass and other plastic materials. The flexural rigidity, or bending stiffness, of microtubules was measured using a laser trapping technique and dark-field microscopy. One end of a microtubule rod was chemically bound to a glass microsphere, while the other end was bound to a silica glass substrate. Then, the microsphere was laser-trapped and manipulated to exert three different deformation modes on the microtubule. The values of flexural rigidity for these deformations were between 10-25 and 10-23 Nm2 as measured for the 5-25 μm length microtubules. The origin of the length dependence of the flexural rigidity of microtubules is discussed.

  5. Mitosis. Microtubule detyrosination guides chromosomes during mitosis.

    Science.gov (United States)

    Barisic, Marin; Silva e Sousa, Ricardo; Tripathy, Suvranta K; Magiera, Maria M; Zaytsev, Anatoly V; Pereira, Ana L; Janke, Carsten; Grishchuk, Ekaterina L; Maiato, Helder

    2015-05-15

    Before chromosomes segregate into daughter cells, they align at the mitotic spindle equator, a process known as chromosome congression. Centromere-associated protein E (CENP-E)/Kinesin-7 is a microtubule plus-end-directed kinetochore motor required for congression of pole-proximal chromosomes. Because the plus-ends of many astral microtubules in the spindle point to the cell cortex, it remains unknown how CENP-E guides pole-proximal chromosomes specifically toward the equator. We found that congression of pole-proximal chromosomes depended on specific posttranslational detyrosination of spindle microtubules that point to the equator. In vitro reconstitution experiments demonstrated that CENP-E-dependent transport was strongly enhanced on detyrosinated microtubules. Blocking tubulin tyrosination in cells caused ubiquitous detyrosination of spindle microtubules, and CENP-E transported chromosomes away from spindle poles in random directions. Thus, CENP-E-driven chromosome congression is guided by microtubule detyrosination. PMID:25908662

  6. Spatiotemporal control of microtubule nucleation and assembly using magnetic nanoparticles

    Science.gov (United States)

    Hoffmann, Céline; Mazari, Elsa; Lallet, Sylvie; Le Borgne, Roland; Marchi, Valérie; Gosse, Charlie; Gueroui, Zoher

    2013-03-01

    Decisions on the fate of cells and their functions are dictated by the spatiotemporal dynamics of molecular signalling networks. However, techniques to examine the dynamics of these intracellular processes remain limited. Here, we show that magnetic nanoparticles conjugated with key regulatory proteins can artificially control, in time and space, the Ran/RCC1 signalling pathway that regulates the cell cytoskeleton. In the presence of a magnetic field, RanGTP proteins conjugated to superparamagnetic nanoparticles can induce microtubule fibres to assemble into asymmetric arrays of polarized fibres in Xenopus laevis egg extracts. The orientation of the fibres is dictated by the direction of the magnetic force. When we locally concentrated nanoparticles conjugated with the upstream guanine nucleotide exchange factor RCC1, the assembly of microtubule fibres could be induced over a greater range of distances than RanGTP particles. The method shows how bioactive nanoparticles can be used to engineer signalling networks and spatial self-organization inside a cell environment.

  7. Long astral microtubules and RACK-1 stabilize polarity domains during maintenance phase in Caenorhabditis elegans embryos.

    Directory of Open Access Journals (Sweden)

    Erkang Ai

    Full Text Available Cell polarity is a very well conserved process important for cell differentiation, cell migration, and embryonic development. After the establishment of distinct cortical domains, polarity cues have to be stabilized and maintained within a fluid and dynamic membrane to achieve proper cell asymmetry. Microtubules have long been thought to deliver the signals required to polarize a cell. While previous studies suggest that microtubules play a key role in the establishment of polarity, the requirement of microtubules during maintenance phase remains unclear. In this study, we show that depletion of Caenorhabditis elegans RACK-1, which leads to short astral microtubules during prometaphase, specifically affects maintenance of cortical PAR domains and Dynamin localization. We then investigated the consequence of knocking down other factors that also abolish astral microtubule elongation during polarity maintenance phase. We found a correlation between short astral microtubules and the instability of PAR-6 and PAR-2 domains during maintenance phase. Our data support a necessary role for astral microtubules in the maintenance phase of cell polarity.

  8. Laulimalide induces dose-dependent modulation of microtubule behaviour in the C. elegans embryo.

    Directory of Open Access Journals (Sweden)

    Megha Bajaj

    Full Text Available Laulimalide is a microtubule-binding drug that was originally isolated from marine sponges. High concentrations of laulimalide stabilize microtubules and inhibit cell division similarly to paclitaxel; however, there are important differences with respect to the nature of the specific cellular defects between these two drugs and their binding sites on the microtubule. In this study, we used Caenorhabditis elegans embryos to investigate the acute effects of laulimalide on microtubules in vivo, with a direct comparison to paclitaxel. We observed surprising dose-dependent effects for laulimalide, whereby microtubules were stabilized at concentrations above 100 nM, but destabilized at concentrations between 50 and 100 nM. Despite this behaviour at low concentrations, laulimalide acted synergistically with paclitaxel to stabilize microtubules when both drugs were used at sub-effective concentrations, consistent with observations of synergistic interactions between these two drugs in other systems. Our results indicate that laulimalide induces a concentration-dependent, biphasic change in microtubule polymer dynamics in the C. elegans embryo.

  9. Short Stop provides an essential link between F-actin and microtubules during axon extension.

    Science.gov (United States)

    Lee, Seungbok; Kolodziej, Peter A

    2002-03-01

    Coordination of F-actin and microtubule dynamics is important for cellular motility and morphogenesis, but little is known about underlying mechanisms. short stop (shot) encodes an evolutionarily conserved, neuronally expressed family of rod-like proteins required for sensory and motor axon extension in Drosophila melanogaster. We identify Shot isoforms that contain N-terminal F-actin and C-terminal microtubule-binding domains, and that crosslink F-actin and microtubules in cultured cells. The F-actin- and microtubule-binding domains of Shot are required in the same molecule for axon extension, though the length of the connecting rod domain can be dramatically reduced without affecting activity. Shot therefore functions as a cytoskeletal crosslinker in axon extension, rather than mediating independent interactions with F-actin and microtubules. A Ca(2+)-binding motif located adjacent to the microtubule-binding domain is also required for axon extension, suggesting that intracellular Ca(2+) release may regulate Shot activity. These results suggest that Shot coordinates regulated interactions between F-actin and microtubules that are crucial for neuronal morphogenesis. PMID:11874915

  10. Separase Promotes Microtubule Polymerization by Activating CENP-E-Related Kinesin Kin7.

    Science.gov (United States)

    Moschou, Panagiotis N; Gutierrez-Beltran, Emilio; Bozhkov, Peter V; Smertenko, Andrei

    2016-05-23

    Microtubules play an essential role in breaking cellular symmetry. We have previously shown that separase associates with microtubules and regulates microtubule-dependent establishment of cell polarity in Arabidopsis. However, separase lacks microtubule-binding activity, raising questions about mechanisms underlying this phenomenon. Here we report that the N-terminal non-catalytic domain of separase binds to the C-terminal tail domain of three homologs of the centromeric protein CENP-E Kinesin 7 (Kin7). Conformational changes of Kin7 induced upon binding to separase facilitate recruitment of Kin7/separase complex (KISC) onto microtubules. KISC operates independently of proteolytic activity of separase in promoting microtubule rescue and pauses, as well as in suppressing catastrophes. Genetic complementation experiments in conditional separase mutant rsw4 background demonstrate the importance of KISC for the establishment of cell polarity and for plant development. Our study establishes a mechanism governing microtubule dynamics via the separase-dependent activation of CENP-E-related kinesins. PMID:27219063

  11. Microtubule binding distinguishes dystrophin from utrophin

    OpenAIRE

    Belanto, Joseph J.; Mader, Tara L.; Eckhoff, Michael D.; Strandjord, Dana M.; Banks, Glen B.; Gardner, Melissa K.; Lowe, Dawn A.; Ervasti, James M.

    2014-01-01

    Our in vitro analyses reveal that dystrophin, the protein absent in Duchenne muscular dystrophy patients, binds microtubules with high affinity and pauses microtubule polymerization, whereas utrophin, the autosomal homologue of dystrophin thought to mirror many known functions of dystrophin, has no activity in either assay. We also report that transgenic utrophin overexpression does not correct subsarcolemmal microtubule lattice disorganization, physical inactivity after mild exercise, or los...

  12. Theoretical treatment of microtubules disappearing in solution.

    OpenAIRE

    Chen, Y; Hill, T L

    1985-01-01

    The origin of the two-phase (cap, no cap) macroscopic kinetic model of the end of a microtubule is reviewed. The model is then applied to a new theoretical problem, namely, the Mitchison-Kirschner [Mitchison, T. & Kirschner, M. W. (1984) Nature (London) 312, 237-242] experiment in which aggregated microtubules in solution spontaneously decrease in number (shorten to disappearance) while the surviving microtubules increase in length. The model fits the experiments without difficulty.

  13. Microtubule nucleation and organization in dendrites.

    Science.gov (United States)

    Delandre, Caroline; Amikura, Reiko; Moore, Adrian W

    2016-07-01

    Dendrite branching is an essential process for building complex nervous systems. It determines the number, distribution and integration of inputs into a neuron, and is regulated to create the diverse dendrite arbor branching patterns characteristic of different neuron types. The microtubule cytoskeleton is critical to provide structure and exert force during dendrite branching. It also supports the functional requirements of dendrites, reflected by differential microtubule architectural organization between neuron types, illustrated here for sensory neurons. Both anterograde and retrograde microtubule polymerization occur within growing dendrites, and recent studies indicate that branching is enhanced by anterograde microtubule polymerization events in nascent branches. The polarities of microtubule polymerization events are regulated by the position and orientation of microtubule nucleation events in the dendrite arbor. Golgi outposts are a primary microtubule nucleation center in dendrites and share common nucleation machinery with the centrosome. In addition, pre-existing dendrite microtubules may act as nucleation sites. We discuss how balancing the activities of distinct nucleation machineries within the growing dendrite can alter microtubule polymerization polarity and dendrite branching, and how regulating this balance can generate neuron type-specific morphologies. PMID:27097122

  14. Evaluation of Aster Gdem v3 Using Icesat Laser Altimetry

    Science.gov (United States)

    Carabajal, C. C.; Boy, J.-P.

    2016-06-01

    We have used a set of Ground Control Points (GCPs) derived from altimetry measurements from the Ice, Cloud and land Elevation Satellite (ICESat) to evaluate the quality of the 30 m posting ASTER (Advanced Spaceborne Thermal Emission and Reflection Radiometer) Global Digital Elevation Model (GDEM) V3 elevation products produced by NASA/METI for Greenland and Antarctica. These data represent the highest quality globally distributed altimetry measurements that can be used for geodetic ground control, selected by applying rigorous editing criteria, useful at high latitudes, where other topographic control is scarce. Even if large outliers still remain in all ASTER GDEM V3 data for both, Greenland and Antarctica, they are significantly reduced when editing ASTER by number of scenes (N≥5) included in the elevation processing. For 667,354 GCPs in Greenland, differences show a mean of 13.74 m, a median of -6.37 m, with an RMSE of 109.65 m. For Antarctica, 6,976,703 GCPs show a mean of 0.41 m, with a median of -4.66 m, and a 54.85 m RMSE, displaying smaller means, similar medians, and less scatter than GDEM V2. Mean and median differences between ASTER and ICESat are lower than 10 m, and RMSEs lower than 10 m for Greenland, and 20 m for Antarctica when only 9 to 31 scenes are included.

  15. Cold exposure reveals two populations of microtubules in pulmonary endothelia

    OpenAIRE

    Ochoa, Cristhiaan D.; Stevens, Troy; Balczon, Ron

    2010-01-01

    Microtubules are composed of α-tubulin and β-tubulin dimers. Microtubules yield tubulin dimers when exposed to cold, which reassemble spontaneously to form microtubule fibers at 37°C. However, mammalian neurons, glial cells, and fibroblasts have cold-stable microtubules. While studying the microtubule toxicity mechanisms of the exotoxin Y from Pseudomonas aeruginosa in pulmonary microvascular endothelial cells, we observed that some endothelial microtubules were very difficult to disassemble ...

  16. Chromosome position at the spindle equator is regulated by chromokinesin and a bipolar microtubule array.

    Science.gov (United States)

    Takagi, Jun; Itabashi, Takeshi; Suzuki, Kazuya; Ishiwata, Shin'ichi

    2013-01-01

    The chromosome alignment is mediated by polar ejection and poleward forces acting on the chromosome arm and kinetochores, respectively. Although components of the motile machinery such as chromokinesin have been characterized, their dynamics within the spindle is poorly understood. Here we show that a quantum dot (Qdot) binding up to four Xenopus chromokinesin (Xkid) molecules behaved like a nanosize chromosome arm in the meiotic spindle, which is self-organized in cytoplasmic egg extracts. Xkid-Qdots travelled long distances along microtubules by changing several tracks, resulting in their accumulation toward and distribution around the metaphase plate. The analysis indicated that the direction of motion and velocity depend on the distribution of microtubule polarity within the spindle. Thus, this mechanism is governed by chromokinesin motors, which is dependent on symmetrical microtubule orientation that may allow chromosomes to maintain their position around the spindle equator until correct microtubule-kinetochore attachment is established. PMID:24077015

  17. Tubulin cofactor B regulates microtubule densities during microglia transition to the reactive states

    International Nuclear Information System (INIS)

    Microglia are highly dynamic cells of the CNS that continuously survey the welfare of the neural parenchyma and play key roles modulating neurogenesis and neuronal cell death. In response to injury or pathogen invasion parenchymal microglia transforms into a more active cell that proliferates, migrates and behaves as a macrophage. The acquisition of these extra skills implicates enormous modifications of the microtubule and actin cytoskeletons. Here we show that tubulin cofactor B (TBCB), which has been found to contribute to various aspects of microtubule dynamics in vivo, is also implicated in microglial cytoskeletal changes. We find that TBCB is upregulated in post-lesion reactive parenchymal microglia/macrophages, in interferon treated BV-2 microglial cells, and in neonate amoeboid microglia where the microtubule densities are remarkably low. Our data demonstrate that upon TBCB downregulation both, after microglia differentiation to the ramified phenotype in vivo and in vitro, or after TBCB gene silencing, microtubule densities are restored in these cells. Taken together these observations support the view that TBCB functions as a microtubule density regulator in microglia during activation, and provide an insight into the understanding of the complex mechanisms controlling microtubule reorganization during microglial transition between the amoeboid, ramified, and reactive phenotypes

  18. Cellulose-Microtubule Uncoupling Proteins Prevent Lateral Displacement of Microtubules during Cellulose Synthesis in Arabidopsis.

    Science.gov (United States)

    Liu, Zengyu; Schneider, Rene; Kesten, Christopher; Zhang, Yi; Somssich, Marc; Zhang, Youjun; Fernie, Alisdair R; Persson, Staffan

    2016-08-01

    Cellulose is the most abundant biopolymer on Earth and is the major contributor to plant morphogenesis. Cellulose is synthesized by plasma membrane-localized cellulose synthase complexes (CSCs). Nascent cellulose microfibrils become entangled in the cell wall, and further catalysis therefore drives the CSC forward through the membrane: a process guided by cortical microtubules via the protein CSI1/POM2. Still, it is unclear how the microtubules can withstand the forces generated by the motile CSCs to effectively direct CSC movement. Here, we identified a family of microtubule-associated proteins, the cellulose synthase-microtubule uncouplings (CMUs), that located as static puncta along cortical microtubules. Functional disruption of the CMUs caused lateral microtubule displacement and compromised microtubule-based guidance of CSC movement. CSCs that traversed the microtubules interacted with the microtubules via CSI1/POM2, which prompted the lateral microtubule displacement. Hence, we have revealed how microtubules can withstand the propulsion of the CSCs during cellulose biosynthesis and thus sustain anisotropic plant cell growth. PMID:27477947

  19. Dilution of individual microtubules observed in real time in vitro: evidence that cap size is small and independent of elongation rate

    OpenAIRE

    1991-01-01

    Although the mechanism of microtubule dynamic instability is thought to involve the hydrolysis of tubulin-bound GTP, the mechanism of GTP hydrolysis and the basis of microtubule stability are controversial. Video microscopy of individual microtubules and dilution protocols were used to examine the size and lifetime of the stabilizing cap. Purified porcine brain tubulin (7-23 microM) was assembled at 37 degrees C onto both ends of isolated sea urchin axoneme fragments in a miniature flow cell ...

  20. MCAK selectivity targets long microtubules for depolymerization

    International Nuclear Information System (INIS)

    We study how the microtubule-associated protein MCAK affects the kinetic properties of a microtubule assembly. On the basis of recent experimental observations, we model the MCAK molecule as performing an unbiased random walk on the microtubule after binding to it from solution, and thereafter inducing depolymerization after reaching one of the ends. We show analytically that this process leads to an effective length-dependent catastrophe rate of the microtubules. Consequently, the steady state length distribution also deviates from pure exponential decay, and varies non-monotonically with the microtubule length. The mean length decreases with the external MCAK concentration, but the ratio of the RMS fluctuation to the mean shows a minimum at a certain MCAK concentration. We discuss the implications of these results for the formation of the mitotic spindle and the chromosome search process during cell division. (author)

  1. Microtubule networks for plant cell division.

    Science.gov (United States)

    de Keijzer, Jeroen; Mulder, Bela M; Janson, Marcel E

    2014-09-01

    During cytokinesis the cytoplasm of a cell is divided to form two daughter cells. In animal cells, the existing plasma membrane is first constricted and then abscised to generate two individual plasma membranes. Plant cells on the other hand divide by forming an interior dividing wall, the so-called cell plate, which is constructed by localized deposition of membrane and cell wall material. Construction starts in the centre of the cell at the locus of the mitotic spindle and continues radially towards the existing plasma membrane. Finally the membrane of the cell plate and plasma membrane fuse to form two individual plasma membranes. Two microtubule-based cytoskeletal networks, the phragmoplast and the pre-prophase band (PPB), jointly control cytokinesis in plants. The bipolar microtubule array of the phragmoplast regulates cell plate deposition towards a cortical position that is templated by the ring-shaped microtubule array of the PPB. In contrast to most animal cells, plants do not use centrosomes as foci of microtubule growth initiation. Instead, plant microtubule networks are striking examples of self-organizing systems that emerge from physically constrained interactions of dispersed microtubules. Here we will discuss how microtubule-based activities including growth, shrinkage, severing, sliding, nucleation and bundling interrelate to jointly generate the required ordered structures. Evidence mounts that adapter proteins sense the local geometry of microtubules to locally modulate the activity of proteins involved in microtubule growth regulation and severing. Many of the proteins and mechanisms involved have roles in other microtubule assemblies as well, bestowing broader relevance to insights gained from plants. PMID:25136380

  2. Talin-KANK1 interaction controls the recruitment of cortical microtubule stabilizing complexes to focal adhesions

    Science.gov (United States)

    Bouchet, Benjamin P; Gough, Rosemarie E; Ammon, York-Christoph; van de Willige, Dieudonnée; Post, Harm; Jacquemet, Guillaume; Altelaar, AF Maarten; Heck, Albert JR; Goult, Benjamin T; Akhmanova, Anna

    2016-01-01

    The cross-talk between dynamic microtubules and integrin-based adhesions to the extracellular matrix plays a crucial role in cell polarity and migration. Microtubules regulate the turnover of adhesion sites, and, in turn, focal adhesions promote the cortical microtubule capture and stabilization in their vicinity, but the underlying mechanism is unknown. Here, we show that cortical microtubule stabilization sites containing CLASPs, KIF21A, LL5β and liprins are recruited to focal adhesions by the adaptor protein KANK1, which directly interacts with the major adhesion component, talin. Structural studies showed that the conserved KN domain in KANK1 binds to the talin rod domain R7. Perturbation of this interaction, including a single point mutation in talin, which disrupts KANK1 binding but not the talin function in adhesion, abrogates the association of microtubule-stabilizing complexes with focal adhesions. We propose that the talin-KANK1 interaction links the two macromolecular assemblies that control cortical attachment of actin fibers and microtubules. DOI: http://dx.doi.org/10.7554/eLife.18124.001 PMID:27410476

  3. Laminin/β1 integrin signal triggers axon formation by promoting microtubule assembly and stabilization

    Institute of Scientific and Technical Information of China (English)

    Wen-Liang Lei; Shi-Ge Xing; Cai-Yun Deng; Xiang-Chun Ju; Xing-Yu Jiang; Zhen-Ge Luo

    2012-01-01

    Axon specification during neuronal polarization is closely associated with increased microtubule stabilization in one of the neurites of unpolarized neuron,but how this increased microtubule stability is achieved is unclear.Here,we show that extracellular matrix (ECM) component laminin promotes neuronal polarization via regulating directional microtubule assembly through β1 integrin (Itgb1).Contact with laminin coated on culture substrate or polystyrene beads was sufficient for axon specification of undifferentiated neurites in cultured hippocampal neurons and cortical slices.Active Itgb1 was found to be concentrated in laminin-contacting neurites.Axon formation was promoted and abolished by enhancing and attenuating Itgbl signaling,respectively.Interestingly,laminin contact promoted plus-end microtubule assembly in a manner that required Itgbl.Moreover,stabilizing microtubules partially prevented polarization defects caused by ltgbl downregulation.Finally,genetic ablation of ltgbl in dorsal telencephalic progenitors caused deficits in axon development of cortical pyramidal neurons.Thus,laminin/Itgb1 signaling plays an instructive role in axon initiation and growth,both in vitro and in vivo,through the regulation of microtubule assembly.This study has established a linkage between an extrinsic factor and intrinsic cytoskeletai dynamics during neuronal polarization.

  4. ASTER VNIR and SWIR Radiometric Calibration and Atmospheric Correction

    Science.gov (United States)

    Arai, Kohei; Thome, Kurtis; Iwasaki, Akira; Biggar, Stuart

    As described in the previous chapter, ASTER relies on three separate subsystems to cover the full spectral range from the visible and near infrared (VNIR), short-wave infrared (SWIR), to the thermal infrared (TIR). Establishing the accuracy of data from all three subsystems requires both sensor-related calibration and atmospheric correction. The dominance of reflected solar energy in the VNIR and SWIR, and emitted terrestrial radiation in the TIR allows separate treatment of the two spectral regions. TIR calibration and correction are covered in a separate chapter. This chapter has two main goals: (1) to allow the user to understand ASTER's radiometric calibration and atmospheric correction processes that enable conversion of VNIR and SWIR digital numbers (DN) to at-sensor reflectance and spectral radiance, and (2) to provide a succinct analysis of the SWIR crosstalk problem and its solutions.

  5. ASTER temperature and emissivity validation on volcano Teide

    OpenAIRE

    Amici, Stefania; Istituto Nazionale di Geofisica e Vulcanologia, Sezione CNT, Roma, Italia; Piscini, Alessandro; Istituto Nazionale di Geofisica e Vulcanologia, Sezione CNT, Roma, Italia; Buongiorno, Fabrizia; Istituto Nazionale di Geofisica e Vulcanologia, Sezione CNT, Roma, Italia

    2010-01-01

    The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER ) has operated since 19 December 1999 from NASA’s Terra Earth-orbiting, sun synchronous satellite. Emissivity and temperature standard products are based on the TES algorithms and require periodical validation campaign. In the frame of the EC project PREVIEW (http://www.preview-risk.com/) a field campaign on Volcano Teide was carried on, from the 16th to 24th of September 2007, to validate and to integrate the satellite...

  6. Identificación de metabasaltos alterados mediante datos ASTER

    Directory of Open Access Journals (Sweden)

    Silvia Castro Godoy

    2010-06-01

    Full Text Available Los datos del sensor ASTER permitieron desarrollar una metodología sencilla, utilizando las bandas del infrarrojo de onda corta (subsistema SWIR, para prospectar cuerpos ígneos alterados que manifiestan diferencias espectrales con respecto a la roca de caja. A modo de ejemplo se detectó la alteración clorítica presente en metabasaltos intercalados en metasedimentitas de la Formación Puntilla de Uspallata en la Precordillera mendocina.

  7. Validation of the ASTER thermal infrared surface radiance data product

    Science.gov (United States)

    Palluconi, Frank D.

    1996-11-01

    The advanced spaceborne thermal emission and reflection radiometer (ASTER) is a 14 channel high spatial resolution instrument selected for flight on the EOS AM-1 platform. This instrument has a 60 km pointable cross-track swath and five thermal infrared channels between 8 and 12 micrometers with 90 m spatial resolution. Correction for the effect of atmospheric attenuation and emission will be made using a radiative transfer model and atmospheric parameters either from the EOS AM-1 platform instruments MODIS (moderate- resolution imaging spectroradiometer) and MISR (multi-angle imaging spectroradiometer) or temperature and moisture profiles from global numerical assimilation models. The correction accuracy depends strongly on the accuracy of the atmospheric information used. To provide an objective assessment of the validity of the atmospheric correction in situ measurements of water surfaces under a variety of atmospheric conditions will be used to estimate the surface leaving radiance at the scale of an ASTER pixel. The procedure will use an array of continuously recording temperature buoys to establish the bulk water temperature, broadband radiometers to determine the near surface water temperature gradient and radiosonde and sunphotometer measurements and a radiative transfer model to deduce the sky irradiance. These measurements and the spectral emissivity of the water will be combined with the relative system spectral response to provide an estimate of thermal infrared surface leaving radiance for each ASTER thermal channel. An example of this approach using a multichannel thermal aircraft scanner as a stand in for ASTER is described. It is expected this approach will provide estimates of surface radiance accurate, in temperature terms, to better than 1 K.

  8. Two-state mechanochemical model for microtubule growth

    CERN Document Server

    Zhang, Yunxin

    2011-01-01

    In this study, a two-state mechanochemical model is presented to describe the dynamic properties of microtubule (MT) growth in cells. The MT switches between two states, assembly state and disassembly state. In assembly state, the growth of microtubule includes two processes: GTP-tubulin binding to the tip of protofilament (PF) and conformational change of PF, during which the penultimate GTP is hydrolyzed and the first tubulin unit that curls out the MT surface is rearranged into MT surface using the energy released from GTP hydrolysis. In disassembly state, the shortening of microtubule is also described by two processes, the release of GDP-tibulin from the tip of PF and one new tubulin unit curls out from the MT surface. Switches between these two states, which are usually called rescue and catastrophe, happen stochastically with external force dependent rates. Using this two-state model with parameters obtained by fitting the recent experimental data, detailed properties of MT growth are obtained, we find...

  9. Centriolar CPAP/SAS-4 Imparts Slow Processive Microtubule Growth.

    Science.gov (United States)

    Sharma, Ashwani; Aher, Amol; Dynes, Nicola J; Frey, Daniel; Katrukha, Eugene A; Jaussi, Rolf; Grigoriev, Ilya; Croisier, Marie; Kammerer, Richard A; Akhmanova, Anna; Gönczy, Pierre; Steinmetz, Michel O

    2016-05-23

    Centrioles are fundamental and evolutionarily conserved microtubule-based organelles whose assembly is characterized by microtubule growth rates that are orders of magnitude slower than those of cytoplasmic microtubules. Several centriolar proteins can interact with tubulin or microtubules, but how they ensure the exceptionally slow growth of centriolar microtubules has remained mysterious. Here, we bring together crystallographic, biophysical, and reconstitution assays to demonstrate that the human centriolar protein CPAP (SAS-4 in worms and flies) binds and "caps" microtubule plus ends by associating with a site of β-tubulin engaged in longitudinal tubulin-tubulin interactions. Strikingly, we uncover that CPAP activity dampens microtubule growth and stabilizes microtubules by inhibiting catastrophes and promoting rescues. We further establish that the capping function of CPAP is important to limit growth of centriolar microtubules in cells. Our results suggest that CPAP acts as a molecular lid that ensures slow assembly of centriolar microtubules and, thereby, contributes to organelle length control. PMID:27219064

  10. Discrepancy Between ASTER- and MODIS- Derived Land Surface Temperatures: Terrain Effects

    OpenAIRE

    Yasushi Yamaguchi; Yuanbo Liu; Yousuke Noumi

    2009-01-01

    The MODerate resolution Imaging Spectroradiometer (MODIS) and the Advanced Spaceborne Thermal Emission Reflection Radiometer (ASTER) are onboard the same satellite platform NASA TERRA. Both MODIS and ASTER offer routine retrieval of land surface temperatures (LSTs), and the ASTER- and MODIS-retrieved LST products have been used worldwide. Because a large fraction of the earth surface consists of mountainous areas, variations in elevation, terrain slope and aspect angles can cause biases in th...

  11. Role of fungal dynein in hyphal growth, microtubule organization, spindle pole body motility and nuclear migration.

    Science.gov (United States)

    Inoue, S; Turgeon, B G; Yoder, O C; Aist, J R

    1998-06-01

    Cytoplasmic dynein is a microtubule-associated motor protein with several putative subcellular functions. Sequencing of the gene (DHC1) for cytoplasmic dynein heavy chain of the filamentous ascomycete, Nectria haematococca, revealed a 4,349-codon open reading frame (interrupted by two introns) with four highly conserved P-loop motifs, typical of cytoplasmic dynein heavy chains. The predicted amino acid sequence is 78.0% identical to the cytoplasmic dynein heavy chain of Neurospora crassa, 70.2% identical to that of Aspergillus nidulans and 24.8% identical to that of Saccharomyces cerevisiae. The genomic copy of DHC1 in N. haematococca wild-type strain T213 was disrupted by inserting a selectable marker into the central motor domain. Mutants grew at 33% of the wild-type rate, forming dense compact colonies composed of spiral and highly branched hyphae. Major cytological phenotypes included (1) absence of aster-like arrays of cytoplasmic microtubules focused at the spindle pole bodies of post-mitotic and interphase nuclei, (2) limited post-mitotic nuclear migration, (3) lack of spindle pole body motility at interphase, (4) failure of spindle pole bodies to anchor interphase nuclei, (5) nonuniform distribution of interphase nuclei and (6) small or ephemeral Spitzenkörper at the apices of hyphal tip cells. Microtubule distribution in the apical region of tip cells of the mutant was essentially normal. The nonuniform distribution of nuclei in hyphae resulted primarily from a lack of both post-mitotic nuclear migration and anchoring of interphase nuclei by the spindle pole bodies. The results support the hypothesis that DHC1 is required for the motility and functions of spindle pole bodies, normal secretory vesicle transport to the hyphal apex and normal hyphal tip cell morphogenesis. PMID:9580563

  12. Organization of microtubules in cochlear hair cells.

    Science.gov (United States)

    Furness, D N; Hackney, C M; Steyger, P S

    1990-07-01

    The organization of microtubules in hair cells of the guinea-pig cochlea has been investigated using transmission electron microscopy and correlated with the location of tubulin-associated immunofluorescence in surface preparations of the organ of Corti. Results from both techniques reveal consistent distributions of microtubules in inner and outer hair cells. In the inner hair cells, microtubules are most concentrated in the apex. Reconstruction from serial sections shows three main groups: firstly, in channels through the cuticular plate and in a discontinuous belt around its upper perimeter; secondly, forming a ring inside a rim extending down from the lower perimeter of the plate; and thirdly, in a meshwork underlying the main body of the plate. In the cell body, microtubules line the inner face of the subsurface cistern and extend longitudinally through a tubulo-vesicular track between the apex and base. In outer hair cells, the pattern of microtubules associated with the cuticular plate is similar, although there are fewer present than in inner hair cells. In outer hair cells from the apex of the cochlea, microtubules occur around an infracuticular protrusion of cuticular plate material. In the cell body, many more microtubules occur in the region below the nucleus compared with inner hair cells. The possible functions of microtubules in hair cells are discussed by comparison with those found in other systems. These include morphogenesis and maintenance of cell shape; intracellular transport, e.g., of neurotransmitter vesicles; providing a possible substrate for motility; mechanical support of structures associated with sensory transduction. PMID:2197374

  13. Oxidative stress decreases microtubule growth and stability in ventricular myocytes.

    Science.gov (United States)

    Drum, Benjamin M L; Yuan, Can; Li, Lei; Liu, Qinghang; Wordeman, Linda; Santana, L Fernando

    2016-04-01

    Microtubules (MTs) have many roles in ventricular myocytes, including structural stability, morphological integrity, and protein trafficking. However, despite their functional importance, dynamic MTs had never been visualized in living adult myocytes. Using adeno-associated viral vectors expressing the MT-associated protein plus end binding protein 3 (EB3) tagged with EGFP, we were able to perform live imaging and thus capture and quantify MT dynamics in ventricular myocytes in real time under physiological conditions. Super-resolution nanoscopy revealed that EB1 associated in puncta along the length of MTs in ventricular myocytes. The vast (~80%) majority of MTs grew perpendicular to T-tubules at a rate of 0.06μm∗s(-1) and growth was preferentially (82%) confined to a single sarcomere. Microtubule catastrophe rate was lower near the Z-line than M-line. Hydrogen peroxide increased the rate of catastrophe of MTs ~7-fold, suggesting that oxidative stress destabilizes these structures in ventricular myocytes. We also quantified MT dynamics after myocardial infarction (MI), a pathological condition associated with increased production of reactive oxygen species (ROS). Our data indicate that the catastrophe rate of MTs increases following MI. This contributed to decreased transient outward K(+) currents by decreasing the surface expression of Kv4.2 and Kv4.3 channels after MI. On the basis of these data, we conclude that, under physiological conditions, MT growth is directionally biased and that increased ROS production during MI disrupts MT dynamics, decreasing K(+) channel trafficking. PMID:26902968

  14. TIPsy tour guides: How microtubule plus-end tracking proteins (+TIPs facilitate axon guidance

    Directory of Open Access Journals (Sweden)

    Elizabeth A Bearce

    2015-06-01

    Full Text Available The growth cone is a dynamic cytoskeletal vehicle, which drives the end of a developing axon. It serves to interpret and navigate through the complex landscape and guidance cues of the early nervous system. The growth cone’s distinctive cytoskeletal organization offers a fascinating platform to study how extracellular cues can be translated into mechanical outgrowth and turning behaviors. While many studies of cell motility highlight the importance of actin networks in signaling, adhesion, and propulsion, both seminal and emerging works in the field have highlighted a unique and necessary role for microtubules in growth cone navigation. Here, we focus on the role of singular pioneer microtubules, which extend into the growth cone periphery and are regulated by a diverse family of microtubule plus-end tracking proteins (+TIPs. These +TIPs accumulate at the dynamic ends of microtubules, where they are well-positioned to encounter and respond to key signaling events downstream of guidance receptors, catalyzing immediate changes in microtubule stability and actin cross-talk, that facilitate both axonal outgrowth and turning events.

  15. Three-dimensional tracking of plus-tips by lattice light-sheet microscopy permits the quantification of microtubule growth trajectories within the mitotic apparatus

    Science.gov (United States)

    Yamashita, Norio; Morita, Masahiko; Legant, Wesley R.; Chen, Bi-Chang; Betzig, Eric; Yokota, Hideo; Mimori-Kiyosue, Yuko

    2015-10-01

    Mitotic apparatus, which comprises hundreds of microtubules, plays an essential role in cell division, ensuring the correct segregation of chromosomes into each daughter cell. To gain insight into its regulatory mechanisms, it is essential to detect and analyze the behavior of individual microtubule filaments. However, the discrimination of discrete microtubule filaments within the mitotic apparatus is beyond the capabilities of conventional light microscopic technologies. Recently, we detected three-dimensional (3-D) microtubule growth dynamics within the cellular cytoplasmic space using lattice light-sheet microscopy in conjunction with microtubule growth marker protein end-binding 1, a microtubule plus-end-tracking protein, which was fused to green fluorescent protein (EB1-GFP). This technique enables high-resolution 3-D imaging at subsecond intervals. We adapted mathematical computing and geometric representation techniques to analyze spatial variations in microtubule growth dynamics within the mitotic spindle apparatus. Our analytical approach enabled the different dynamic properties of individual microtubules to be determined, including the direction and speed of their growth, and their growth duration within a 3-D spatial map. Our analysis framework provides an important step toward a more comprehensive understanding of the mechanisms driving cellular machinery at the whole-cell level.

  16. Three-dimensional tracking of plus-tips by lattice light-sheet microscopy permits the quantification of microtubule growth trajectories within the mitotic apparatus.

    Science.gov (United States)

    Yamashita, Norio; Morita, Masahiko; Legant, Wesley R; Chen, Bi-Chang; Betzig, Eric; Yokota, Hideo; Mimori-Kiyosue, Yuko

    2015-10-01

    Mitotic apparatus, which comprises hundreds of microtubules, plays an essential role in cell division, ensuring the correct segregation of chromosomes into each daughter cell. To gain insight into its regulatory mechanisms, it is essential to detect and analyze the behavior of individual microtubule filaments. However, the discrimination of discrete microtubule filaments within the mitotic apparatus is beyond the capabilities of conventional light microscopic technologies. Recently, we detected three-dimensional (3-D) microtubule growth dynamics within the cellular cytoplasmic space using lattice light-sheet microscopy in conjunction with microtubule growth marker protein end-binding 1, a microtubule plus-end-tracking protein, which was fused to green fluorescent protein (EB1-GFP). This technique enables high-resolution 3-D imaging at subsecond intervals. We adapted mathematical computing and geometric representation techniques to analyze spatial variations in microtubule growth dynamics within the mitotic spindle apparatus. Our analytical approach enabled the different dynamic properties of individual microtubules to be determined, including the direction and speed of their growth, and their growth duration within a 3-D spatial map. Our analysis framework provides an important step toward a more comprehensive understanding of the mechanisms driving cellular machinery at the whole-cell level. PMID:26527322

  17. Effect of day length, growth regulators and fertilization on growth and development of Michaelmas Daisy (Aster novi-belgii L.)

    OpenAIRE

    Ines Vršek; Ksenija Karlović; Vesna Židovec

    2002-01-01

    Effect of day length, growth regulators and fertilization on the height, plant diameter, number of buds and inflorescences was monitored in the species Aster novi-belgii L. ´Mary Ballard´ throughout three growing seasons in order to explore the possibility of its late-summer growing as a flowering pot plant. The total number of buds and inflorescences was by 20% larger under natural day length compared to plants grown under the shortened photoperiod. Bud opening dynamics was more intensive un...

  18. Assessment of Landscape Fragmentation Associated With Urban Centers Using ASTER Data

    Science.gov (United States)

    Stefanov, W. L.

    2002-12-01

    The role of humans as an integral part of the environment and ecosystem processes has only recently been accepted into mainstream ecological thought. The realization that virtually all ecosystems on Earth have experienced some degree of human alteration or impact has highlighted the need to incorporate humans (and their environmental effects) into ecosystem models. A logical starting point for investigation of human ecosystem dynamics is examination of the land cover characteristics of large urban centers. Land cover and land use changes associated with urbanization are important drivers of local geological, hydrological, ecological, and climatic change. Quantification and monitoring of urban land cover/land use change is part of the primary mission of the ASTER instrument on board the NASA Terra satellite, and comprises the fundamental research objective of the Urban Environmental Monitoring (UEM) Program at Arizona State University. The UEM program seeks to acquire day/night, visible through thermal infrared data twice per year for 100 global urban centers (with an emphasis on semi-arid cities) over the nominal six-year life of the Terra mission. Data have been acquired for the majority of the target urban centers and are used to compare landscape fragmentation patterns on the basis of land cover classifications. Land cover classifications of urban centers are obtained using visible through mid-infrared reflectance and emittance spectra together with calculated vegetation index and spatial variance texture information (all derived from raw ASTER data). This information is combined within a classification matrix, using an expert system framework, to obtain final pixel classifications. Landscape fragmentation is calculated using a pixel per unit area metric for comparison between 55 urban centers with varying geographic and climatic settings including North America, South America, Europe, central and eastern Asia, and Australia. Temporal variations in land cover

  19. Rearrangements of microtubule cytoskeleton in stomatal closure of Arabidopsis induced by nitric oxide

    Institute of Scientific and Technical Information of China (English)

    ZHANG YongMei; WU ZhongYi; WANG XueChen; YU Rong

    2008-01-01

    NO (nitric oxide), known as a key signal molecule in plant, plays important roles in regulation of stomatal movement. In this study, microtubule dynamics and its possible mechanism in the NO signal pathway were investigated. The results were as follows: (ⅰ) In vivo stomatal aperture assays revealed that both vinblastine (microtubule-disrupting drug) and SNP (exogenous NO donor) prevented stomatal opening in the light, and vinblastine even could enhance the inhibitory effect of SNP, whereas taxol (a microtubule-stabilizing agent) was able to reduce this effect; (ⅱ) microtubules in the opening Arabi-dopsis guard cells expressing GFP:α-tubulin-6 (AtGFP:α-tubulin-6) were organized in parallel, straight and dense bundles, radiating from the ventral side to the dorsal side, and most of them were localized perpendicularly to the ventral wall; (ⅲ) under the same environmental conditions, treated with SNP for 30 min, the radial arrays of microtubules in guard cells began to break down, twisted partially and be-came oblique or exhibited a random pattern; (ⅳ) furthermore, the involvement of cytosolic Ca2+ in this event was tested. Stomatal aperture assays revealed that BAPTA-AM (a chelator of Ca2+) greatly sup-pressed the effect of NO on stomatal closure; however, it did not show the same function on stomatal closure induced by vinblastine. When BAPTA-AM was added to the SNP-pretreated solution, the SNP-induced disordered microtubulue cytoskeleton in guard cells underwent rearrangement in a time-dependent manner. After 30 min of treatment with BAPTA-AM, the cortical microtubules resumed the original radial distribution, almost the same as the control. All this indicates that NO may promote rearrangement of microtubule cytoskeleton via elevation of [Ca2+]cyt (free Ca2+ concentration in the cy-toplasm), finally leading to stomatal closure.

  20. Prediction of landslides using ASTER imagery and data mining models

    Science.gov (United States)

    Song, Kyo-Young; Oh, Hyun-Joo; Choi, Jaewon; Park, Inhye; Lee, Changwook; Lee, Saro

    2012-03-01

    The aim of this study was to identify landslide-related factors using only remotely sensed data and to present landslide susceptibility maps using a geographic information system, data-mining models, an artificial neural network (ANN), and an adaptive neuro-fuzzy interface system (ANFIS). Landslide-related factors were identified in Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) satellite imagery. The slope, aspect, and curvature of topographic features were calculated from a digital elevation model that was made using the ASTER imagery. Lineaments, land-cover, and normalized difference vegetative index layers were also extracted from the imagery. Landslide-susceptible areas were analyzed and mapped based on occurrence factors using the ANN and ANFIS. The generalized bell-shaped built-in membership function of the ANFIS was applied to landslide susceptibility mapping. Analytical results were validated using landslide test location data. In the validation results, the ANN model showed 80.42% prediction accuracy and the ANFIS model showed 86.55% prediction accuracy. These results suggest that the ANFIS model has a better performance than does the ANN in predicting landslide susceptibility.

  1. Association of Ebola Virus Matrix Protein VP40 with Microtubules

    OpenAIRE

    Ruthel, Gordon; Demmin, Gretchen L.; Kallstrom, George; Javid, Melodi P.; Badie, Shirin S.; Will, Amy B.; Nelle, Timothy; Schokman, Rowena; Nguyen, Tam L.; Carra, John H; Bavari, Sina; Aman, M. Javad

    2005-01-01

    Viruses exploit a variety of cellular components to complete their life cycles, and it has become increasingly clear that use of host cell microtubules is a vital part of the infection process for many viruses. A variety of viral proteins have been identified that interact with microtubules, either directly or via a microtubule-associated motor protein. Here, we report that Ebola virus associates with microtubules via the matrix protein VP40. When transfected into mammalian cells, a fraction ...

  2. Microtubule detyrosination guides chromosomes during mitosis

    OpenAIRE

    Barisic, Marin; Silva e Sousa, Ricardo; Tripathy, Suvranta K.; Magiera, Maria M.; Zaytsev, Anatoly V.; Pereira, Ana L.; Janke, Carsten; Grishchuk, Ekaterina L.; Maiato, Helder

    2015-01-01

    Before chromosomes segregate into daughter cells they align at the mitotic spindle equator, a process known as chromosome congression. CENP-E/Kinesin-7 is a microtubule plus-end-directed kinetochore motor required for congression of pole-proximal chromosomes. Because the plus-ends of many astral microtubules in the spindle point to the cell cortex, it remains unknown how CENP-E guides pole-proximal chromosomes specifically towards the equator. Here we found that congression of pole-proximal c...

  3. Hepatic microtubule acetylation and stability induced by chronic alcohol exposure impair nuclear translocation of STAT3 and STAT5B, but not Smad2/3.

    Science.gov (United States)

    Fernandez, David J; Tuma, Dean J; Tuma, Pamela L

    2012-12-15

    Although alcoholic liver disease is clinically well described, the molecular basis for alcohol-induced hepatotoxicity is not well understood. Previously, we found that alcohol exposure led to increased microtubule acetylation and stability in polarized, hepatic WIF-B cells and in livers from ethanol-fed rats. Because microtubules are known to regulate transcription factor nuclear translocation and dynamic microtubules are required for translocation of at least a subset of these factors, we examined whether alcohol-induced microtubule acetylation and stability impair nuclear translocation. We examined nuclear delivery of factors representing the two mechanisms by which microtubules regulate translocation. To represent factors that undergo directed delivery, we examined growth hormone-induced STAT5B translocation and IL-6-induced STAT3 translocation. To represent factors that are sequestered in the cytoplasm by microtubule attachment until ligand activation, we examined transforming growth factor-β-induced Smad2/3 translocation. We found that ethanol exposure selectively impaired translocation of the STATs, but not Smad2/3. STAT5B delivery was decreased to a similar extent by addition of taxol (a microtubule-stabilizing drug) or trichostatin A (a deacetylase inhibitor), agents that promote microtubule acetylation in the absence of alcohol. Thus the alcohol-induced impairment of STAT nuclear translocation can be explained by increased microtubule acetylation and stability. Only ethanol treatment impaired STAT5B activation, indicating that microtubules are not important for its activation by Jak2. Furthermore, nuclear exit was not changed in treated cells, indicating that this process is also independent of microtubule acetylation and stability. Together, these results raise the exciting possibility that deacetylase agonists may be effective therapeutics for the treatment of alcoholic liver disease. PMID:23064763

  4. Applying Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) spectral indices for geological mapping and mineral identification on the Tibetan Plateau

    CERN Document Server

    Corrie, Robert; Aitchison, Jonathan

    2011-01-01

    The Tibetan Plateau holds clues to understanding the dynamics and mechanisms associated with continental growth. Part of the region is characterized by zones of ophiolitic melange believed to represent the remnants of ancient oceanic crust and underlying upper mantle emplaced during oceanic closures. However, due to the remoteness of the region and the inhospitable terrain many areas have not received detailed investigation. Increased spatial and spectral resolution of satellite sensors have made it possible to map in greater detail the mineralogy and lithology than in the past. Recent work by Yoshiki Ninomiya of the Geological Survey of Japan has pioneered the use of several spectral indices for the mapping of quartzose, carbonate, and silicate rocks using Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) thermal infrared (TIR) data. In this study, ASTER TIR indices have been applied to a region in western-central Tibet for the purposes of assessing their effectiveness for differentiatin...

  5. Stereo Pair with ASTER Image, Iturralde Structure, Bolivia

    Science.gov (United States)

    2002-01-01

    An 8-kilometer (5-mile) wide crater of possible impact origin is shown in this stereoscopic view of an isolated part of the Bolivian Amazon. The view is derived from an Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) satellite image and a Shuttle Radar Topography Mission (SRTM) elevation model. The circular feature covering much of the image, known as the Iturralde Structure, is possibly the Earth's most recent 'big' impact event recording collision with a meteor or comet that might have occurred between 11,000 and 30,000 years ago.Although the structure was identified on satellite photographs in the mid-1980s, its location is so remote that it has only been visited by scientific investigators twice, most recently by a team from NASA's Goddard Space Flight Center in September 2002. Lying in an area of very low relief, the landform is a quasi-circular closed depression only about 20 meters (66 feet) in depth, with sharply defined sub-angular 'rim' materials. It resembles a 'cookie cutter' in that its appearance 'cuts' the heavily vegetated soft-sediments and pampas of this part of Bolivia. The SRTM data have provided investigators with the first topographic map of the site and will allow studies of its three-dimensional structure crucial to determining whether it actually is of impact origin.This stereoscopic image was generated by first draping the ASTER satellite image over the Shuttle Radar Topography Mission digital elevation model. Two differing perspectives were then calculated, one for each eye. They can be seen in 3-D by viewing the left image with the right eye and the right image with the left eye (cross-eyed viewing) or by downloading and printing the image pair and viewing them with a stereoscope. When stereoscopically merged, the result is a vertically exaggerated view of Earth's surface in its full three dimensions.Thick vegetation in part defines the surface that the SRTM radar sees as it maps the terrain. Much of the local

  6. INTEGRATION OF PALSAR AND ASTER SATELLITE DATA FOR GEOLOGICAL MAPPING IN TROPICS

    Directory of Open Access Journals (Sweden)

    A. Beiranvand Pour

    2015-10-01

    Full Text Available This research investigates the integration of the Phased Array type L-band Synthetic Aperture Radar (PALSAR and the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER satellite data for geological mapping applications in tropical environments. The eastern part of the central belt of peninsular Malaysia has been investigated to identify structural features and mineral mapping using PALSAR and ASTER data. Adaptive local sigma and directional filters were applied to PALSAR data for detecting geological structure elements in the study area. The vegetation, mineralogic and lithologic indices for ASTER bands were tested in tropical climate. Lineaments (fault and fractures and curvilinear (anticline or syncline were detected using PALSAR fused image of directional filters (N-S, NE-SW, and NW-SE.Vegetation index image map show vegetation cover by fusing ASTER VNIR bands. High concentration of clay minerals zone was detected using fused image map derived from ASTER SWIR bands. Fusion of ASTER TIR bands produced image map of the lithological units. Results indicate that data integration and data fusion from PALSAR and ASTER sources enhanced information extraction for geological mapping in tropical environments.

  7. Thermal Infrared ASTER Observations of Faults in Southern California

    Science.gov (United States)

    Eneva, M.

    2005-12-01

    Reports on earthquake precursors observed in the thermal infrared (TIR) data from several satellites have caused mixed reactions. Some researchers have identified precursory anomalies, such as increased temperatures of several degrees over several days in areas extending up to hundreds of kilometers. In view of the uncertainties in the data, others have been skeptical that such changes can be reliably and uniquely associated with seismic events. This problem is a subset of the more general question how to interpret TIR observations from space for the purpose of fault characterization. Although faults are often clearly discernable in thermal images, the contributions of various factors to any temporal variability in their thermal properties are not clear. These factors include vegetation, soil moisture, surface and air temperature, atmospheric water vapor, and perhaps even wind. Extracting anomalies specifically associated with earthquakes in view of this natural variability and in the presence of observational uncertainties is a difficult task at best. Using standard higher-level TIR products (e.g., surface temperature) derived from radiance at sensor is likely questionable without additional corrections. We address these questions through the analysis of 60 km x 60 km images collected by the ASTER instrument on board of the Terra satellite. ASTER is unique in that five of its 14 channels are TIR, with a spatial resolution of 90 m (compared with at least 1-km spatial resolution of instruments used in previous reports of precursory anomalies). We focus on a specific area in southern California (32.80N - 34.50N, 115.90W - 117.20W) that includes substantial parts of the San Andreas, San Jacinto and Elsinore faults, as well as two recent M5.2 and M4.9 earthquakes (June 12 and 16, 2005). In addition to the existing ASTER data, mostly collected in the daytime, we have made arrangements for future data collections over the next year, with emphasis on nighttime TIR data

  8. Mechanism for the catastrophe-promoting activity of the microtubule destabilizer Op18/stathmin

    OpenAIRE

    Gupta, Kamlesh K.; Li, Chunlei; Duan, Aranda; Alberico, Emily O.; Kim, Oleg V.; Alber, Mark S.; Goodson, Holly V.

    2013-01-01

    The microtubule (MT) cytoskeleton is a dynamic polymer network that plays a crucial role in cell function and disease. MT assembly and dynamics are precisely controlled; a key regulator is the MT destabilizer known as stathmin. Stathmin’s mechanism of action remains controversial: one well-supported model is that it reduces polymer indirectly by sequestering MT subunits; the alternative is that it acts directly on MTs by an as yet unknown mechanism. We provide a resolution to this debate by p...

  9. Poly-Pattern Compressive Segmentation of ASTER Data for GIS

    Science.gov (United States)

    Myers, Wayne; Warner, Eric; Tutwiler, Richard

    2007-01-01

    Pattern-based segmentation of multi-band image data, such as ASTER, produces one-byte and two-byte approximate compressions. This is a dual segmentation consisting of nested coarser and finer level pattern mappings called poly-patterns. The coarser A-level version is structured for direct incorporation into geographic information systems in the manner of a raster map. GIs renderings of this A-level approximation are called pattern pictures which have the appearance of color enhanced images. The two-byte version consisting of thousands of B-level segments provides a capability for approximate restoration of the multi-band data in selected areas or entire scenes. Poly-patterns are especially useful for purposes of change detection and landscape analysis at multiple scales. The primary author has implemented the segmentation methodology in a public domain software suite.

  10. Ship extraction and categorization from ASTER VNIR imagery

    Science.gov (United States)

    Partsinevelos, Panagiotis; Miliaresis, George

    2014-08-01

    We present a methodology for ship extraction and categorization from relatively low resolution multispectral ASTER imagery, corresponding to the sea region south east of Athens in Greece. At a first level, in the radiometrically corrected image, quad tree decomposition and bounding rectangular extraction automatically outline location of objects - possible ships, by statistically evaluating spectral responses throughout the segmented image. Subsequently, the object borders within the rectangular regions are extracted, while connected component labelling combined by size and shape filtering allows ship characterization. The ships' spectral signature is determined in green, red and infrared bands while cluster analysis allows the identification of ship categories on the basis of their size and reflectance. Additional pixel- based measures reveal estimated ship orientation, direction, movement, stability and turning. The results are complemented with additional geographic information and inference tools are formed towards the determination of probable ship type and its destination.

  11. Loop formation of microtubules during gliding at high density

    Energy Technology Data Exchange (ETDEWEB)

    Liu, Lynn; Ross, Jennifer L [Department of Physics, University of Massachusetts Amherst, Amherst, MA 01003 (United States); Tuezel, Erkan, E-mail: rossj@physics.umass.edu [Department of Physics, Worcester Polytechnic Institute, 100 Institute Road, Worcester, MA 01609 (United States)

    2011-09-21

    The microtubule cytoskeleton, including the associated proteins, forms a complex network essential to multiple cellular processes. Microtubule-associated motor proteins, such as kinesin-1, travel on microtubules to transport membrane bound vesicles across the crowded cell. Other motors, such as cytoplasmic dynein and kinesin-5, are used to organize the cytoskeleton during mitosis. In order to understand the self-organization processes of motors on microtubules, we performed filament-gliding assays with kinesin-1 motors bound to the cover glass with a high density of microtubules on the surface. To observe microtubule organization, 3% of the microtubules were fluorescently labeled to serve as tracers. We find that microtubules in these assays are not confined to two dimensions and can cross one other. This causes microtubules to align locally with a relatively short correlation length. At high density, this local alignment is enough to create 'intersections' of perpendicularly oriented groups of microtubules. These intersections create vortices that cause microtubules to form loops. We characterize the radius of curvature and time duration of the loops. These different behaviors give insight into how crowded conditions, such as those in the cell, might affect motor behavior and cytoskeleton organization.

  12. Loop formation of microtubules during gliding at high density

    International Nuclear Information System (INIS)

    The microtubule cytoskeleton, including the associated proteins, forms a complex network essential to multiple cellular processes. Microtubule-associated motor proteins, such as kinesin-1, travel on microtubules to transport membrane bound vesicles across the crowded cell. Other motors, such as cytoplasmic dynein and kinesin-5, are used to organize the cytoskeleton during mitosis. In order to understand the self-organization processes of motors on microtubules, we performed filament-gliding assays with kinesin-1 motors bound to the cover glass with a high density of microtubules on the surface. To observe microtubule organization, 3% of the microtubules were fluorescently labeled to serve as tracers. We find that microtubules in these assays are not confined to two dimensions and can cross one other. This causes microtubules to align locally with a relatively short correlation length. At high density, this local alignment is enough to create 'intersections' of perpendicularly oriented groups of microtubules. These intersections create vortices that cause microtubules to form loops. We characterize the radius of curvature and time duration of the loops. These different behaviors give insight into how crowded conditions, such as those in the cell, might affect motor behavior and cytoskeleton organization.

  13. The role of microtubule movement in bidirectional organelle transport

    CERN Document Server

    Kulić, Igor M; Kim, Hwajin; Kural, Comert; Blehm, Benjamin; Selvin, Paul R; Nelson, Philip C; Gelfand, Vladimir I

    2008-01-01

    We study the role of microtubule movement in bidirectional organelle transport in Drosophila S2 cells and show that EGFP-tagged peroxisomes in cells serve as sensitive probes of motor induced, noisy cytoskeletal motions. Multiple peroxisomes move in unison over large time windows and show correlations with microtubule tip positions, indicating rapid microtubule fluctuations in the longitudinal direction. We report the first high-resolution measurement of longitudinal microtubule fluctuations performed by tracing such pairs of co-moving peroxisomes. The resulting picture shows that motor-dependent longitudinal microtubule oscillations contribute significantly to cargo movement along microtubules. Thus, contrary to the conventional view, organelle transport cannot be described solely in terms of cargo movement along stationary microtubule tracks, but instead includes a strong contribution from the movement of the tracks.

  14. Retrieval of a Temporal High-Resolution Leaf Area Index (LAI by Combining MODIS LAI and ASTER Reflectance Data

    Directory of Open Access Journals (Sweden)

    Yonghua Qu

    2014-12-01

    Full Text Available This paper aims to retrieve temporal high-resolution LAI derived by fusing MOD15 products (1 km resolution, field-measured LAI and ASTER reflectance (15-m resolution. Though the inversion of a physically based canopy reflectance model using high-resolution satellite data can produce high-resolution LAI products, the obstacle to producing temporal products is obvious due to the low temporal resolution of high resolution satellite data. A feasible method is to combine different source data, taking advantage of the spatial and temporal resolution of different sensors. In this paper, a high-resolution LAI retrieval method was implemented using a dynamic Bayesian network (DBN inversion framework. MODIS LAI data with higher temporal resolution were used to fit the temporal background information, which is then updated by new, higher resolution data, herein ASTER data. The interactions between the different resolution data were analyzed from a Bayesian perspective. The proposed method was evaluated using a dataset collected in the HiWater (Heihe Watershed Allied Telemetry Experimental Research experiment. The determination coefficient and RMSE between the estimated and measured LAI are 0.80 and 0.43, respectively. The research results suggest that even though the coarse-resolution background information differs from the high-resolution satellite observations, a satisfactory estimation result for the temporal high-resolution LAI can be produced using the accumulated information from both the new observations and background information.

  15. Doublecortin Is Excluded from Growing Microtubule Ends and Recognizes the GDP-Microtubule Lattice.

    Science.gov (United States)

    Ettinger, Andreas; van Haren, Jeffrey; Ribeiro, Susana A; Wittmann, Torsten

    2016-06-20

    Many microtubule (MT) functions are mediated by a diverse class of proteins (+TIPs) at growing MT plus ends that control intracellular MT interactions and dynamics and depend on end-binding proteins (EBs) [1]. Cryoelectron microscopy has recently identified the EB binding site as the interface of four tubulin dimers that undergoes a conformational change in response to β-tubulin GTP hydrolysis [2, 3]. Doublecortin (DCX), a MT-associated protein (MAP) required for neuronal migration during cortical development [4, 5], binds to the same site as EBs [6], and recent in vitro studies proposed DCX localization to growing MT ends independent of EBs [7]. Because this conflicts with observations in neurons [8, 9] and the molecular function of DCX is not well understood, we revisited intracellular DCX dynamics at low expression levels. Here, we report that DCX is not a +TIP in cells but, on the contrary, is excluded from the EB1 domain. In addition, we find that DCX-MT interactions are highly sensitive to MT geometry. In cells, DCX binding was greatly reduced at MT segments with high local curvature. Remarkably, this geometry-dependent binding to MTs was completely reversed in the presence of taxanes, which reconciles incompatible observations in cells [9] and in vitro [10]. We propose a model explaining DCX specificity for different MT geometries based on structural changes induced by GTP hydrolysis that decreases the spacing between adjacent tubulin dimers [11]. Our data are consistent with a unique mode of MT interaction in which DCX specifically recognizes this compacted GDP-like MT lattice. PMID:27238282

  16. Cytoskeletal logic: a model for molecular computation via Boolean operations in microtubules and microtubule-associated proteins.

    Science.gov (United States)

    Lahoz-Beltra, R; Hameroff, S R; Dayhoff, J E

    1993-01-01

    Adaptive behaviors and dynamic activities within living cells are organized by the cytoskeleton: intracellular networks of interconnected protein polymers which include microtubules (MTs), actin, intermediate filaments, microtubule associated proteins (MAPs) and other protein structures. Cooperative interactions among cytoskeletal protein subunit conformational states have been used to model signal transmission and information processing. In the present work we present a theoretical model for molecular computing in which Boolean logic is implemented in parallel networks of individual MTs interconnected by MAPs. Conformational signals propagate on MTs as in data buses and in the model MAPs are considered as Boolean operators, either as bit-lines (like MTs) where a signal can be transported unchanged between MTs ('BUS-MAP'), or as bit-lines where a Boolean operation is performed in one of the two MAP-MT attachments ('LOGIC-MAP'). Three logic MAPs have been defined ('NOT-MAP, 'AND-MAP', 'XOR-MAP') and used to demonstrate addition, subtraction and other arithmetic operations. Although our choice of Boolean logic is arbitrary, the simulations demonstrate symbolic manipulation in a connectionist system and suggest that MT-MAP networks can perform computation in living cells and are candidates for future molecular computing devices. PMID:8318677

  17. The effect of human microtubule-associated-protein tau on the assembly structure of microtubules and its ionic strength dependence

    Science.gov (United States)

    Choi, M. C.; Raviv, U.; Miller, H. P.; Gaylord, M. R.; Kiris, E.; Ventimiglia, D.; Needleman, D. J.; Chung, P. J.; Deek, J.; Lapointe, N.; Kim, M. W.; Wilson, L.; Feinstein, S. C.; Safinya, C. R.

    2010-03-01

    Microtubules (MTs), 25 nm protein nanotubes, are among the major filamentous elements of the eukaryotic cytoskeleton involved in intracellular trafficking, cell division and the establishment and maintenance of cell shape. Microtubule-associated-protein tau regulates tubulin assembly, MT dynamics and stability. Aberrant tau action has long been correlated with numerous neurodegenerative diseases, including Alzheimer's, and fronto-temporal dementia with Parkinsonism linked to chromosome 17 (FTDP-17) Using synchrotron small angle x-ray scattering (SAXS) and binding assay, we examine the effects of tau on the assembly structure of taxol-stabilized MTs. We find that tau regulates the distribution of protofilament numbers in MTs as reflected in the observed increase in the average radius of MTs with increasing the tau/tubulin molar ratio. Additionally, tau-MT interactions are mediated to a large extent via electrostatic interactions: the binding affinity of tau to MTs is ionic strength dependent. Supported by DOE-BES DE-FG02-06ER46314, NSF DMR-0803103, NIH NS35010, NIH NS13560. (Ref) M.C. Choi, S.C. Feinstein, and C.R. Safinya et al. Biophys. J. 97; 519 (2009).

  18. Distribution and Ecology of Aster amellus aggregates in the Czech Republic

    Czech Academy of Sciences Publication Activity Database

    Mandáková, T.; Münzbergová, Zuzana

    2006-01-01

    Roč. 98, - (2006), s. 845-856. ISSN 0305-7364 Institutional research plan: CEZ:AV0Z60050516 Keywords : Distribution * Ecology * Aster amellus Subject RIV: EF - Botanics Impact factor: 2.448, year: 2006

  19. ASTER Global Emissivity Dataset Monthly 0.05 degree HDF5

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) Global Emissivity Dataset (GED) is a collection of monthly files (see known issues for gaps)...

  20. ASTER Global Emissivity Dataset Monthly 0.05 degree NetCDF4

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) Global Emissivity Dataset (GED) is a collection of monthly files (see known issues for gaps)...

  1. ASTER Global Emissivity Dataset 100-meter Binary V003 - AG100B

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Advanced Spaceborne Thermal Emission and Reflection radiometer Global Emissivity Database (ASTER GED) was developed by the National Aeronautics and Space...

  2. ASTER Global Emissivity Dataset 1-kilometer Binary V003 - AG1KMB

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Advanced Spaceborne Thermal Emission and Reflection radiometer Global Emissivity Database (ASTER GED) was developed by the National Aeronautics and Space...

  3. ASTER Global Emissivity Dataset 1-kilometer V003 - AG1KM

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The Advanced Spaceborne Thermal Emission and Reflection radiometer Global Emissivity Database (ASTER GED) was developed by the National Aeronautics and Space...

  4. Rock type mapping with indices defined for multispectral thermal infrared ASTER data: case studies

    Science.gov (United States)

    Ninomiya, Yoshiki

    2003-03-01

    ASTER sensor aboard NASA's Terra satellite has the capability of measuring multispectral thermal infrared (TIR) emission from the earth's surface to space. The author proposed indices by the combination of ASTER-TIR bands for detecting quartz and carbonate minerals, and another index to estimate the abundance of bulk SiO2 content in the surface silicate rocks, applied them to the low level ASTER radiance at the sensor data without atmospheric corrections, and showed a potential ability of the indices in a rock type mapping. This paper tries to apply the proposed method into the practical case studies using ASTER-TIR data. The study sites include ophiolitic belt zones in Oman and along Yarlun Zangbo River in Tibet. The applied results are compared with the geology of the study areas. It indicates that the new remote sensing approach proposed here would improve the quality and the cost of the geological mapping in arid and semi-arid regions.

  5. An assessment of ASTER surface reflectance products generated by GEO Grid

    Science.gov (United States)

    Yamamoto, Hirokazu; Kamei, Akihide; Moriyama, Masao; Tsuchida, Satoshi

    2010-08-01

    The GEO Grid is an e-infrastructure, which is capable in archiving large amount of satellite data and conducting higher level processing using the advanced grid technologies.1 The Advanced Space-borne Thermal Emission and Reflection Radiometer (ASTER) Level 0 data are stored in a cluster system on GEO Grid, and ASTER ortho-rectified radiance and Digital Elevation Model (DEM) products are able to be generated on this system globally since 2000. This research shows validation of new ASTER surface reflectance products generated by the GEO Grid system, which can apply the radiometric and atmospheric correction to ASTER ortho-rectified radiance data of Visible and Near Infrared (VNIR) and Shortwave Infrared (SWIR).

  6. Perturbing microtubule integrity blocks AMP-activated protein kinase-induced meiotic resumption in cultured mouse oocytes.

    Science.gov (United States)

    Ya, Ru; Downs, Stephen M

    2014-02-01

    The oocyte meiotic spindle is comprised of microtubules (MT) that bind chromatin and regulate both metaphase plate formation and karyokinesis during meiotic maturation; however, little information is known about their role in meiosis reinitiation. This study was conducted to determine if microtubule integrity is required for meiotic induction and to ascertain how it affects activation of AMP-activated protein kinase (AMPK), an important participant in the meiotic induction process. Treatment with microtubule-disrupting agents nocodazole and vinblastine suppressed meiotic resumption in a dose-dependent manner in both arrested cumulus cell-enclosed oocytes (CEO) stimulated with follicle-stimulating hormone (FSH) and arrested denuded oocytes (DO) stimulated with the AMPK activator, 5-aminoimidazole-4-carboxamide-1-beta-4-ribofuranoside (AICAR). This effect coincided with suppression of AMPK activation as determined by western blotting and germinal vesicle immunostaining. Treatment with the MT stabilizer paclitaxel also suppressed meiotic induction. Targeting actin filament polymerization had only a marginal effect on meiotic induction. Immunolocalization experiments revealed that active AMPK colocalized with γ-tubulin during metaphase I and II stages, while it localized at the spindle midzone during anaphase. This discrete localization pattern was dependent on MT integrity. Treatment with nocodazole led to disruption of proper spindle pole localization of active AMPK, while paclitaxel induced excessive polymerization of spindle MT and formation of ectopic asters with accentuated AMPK colocalization. Although stimulation of AMPK increased the rate of germinal vesicle breakdown (GVB), spindle formation and polar body (PB) extrusion, the kinase had no effect on peripheral movement of the spindle. These data suggest that the meiosis-inducing action and localization of AMPK are regulated by MT spindle integrity during mouse oocyte maturation. PMID:23199370

  7. ASTER, ALI and Hyperion sensors data for lithological mapping and ore minerals exploration

    OpenAIRE

    Beiranvand Pour, Amin; Hashim, Mazlan

    2014-01-01

    This paper provides a review of the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER), Advanced Land Imager (ALI), and Hyperion data and applications of the data as a tool for ore minerals exploration, lithological and structural mapping. Spectral information extraction from ASTER, ALI, and Hyperion data has great ability to assist geologists in all disciplines to map the distribution and detect the rock units exposed at the earth’s surface. The near coincidence of Earth ...

  8. Motor protein accumulation on antiparallel microtubule overlaps

    CERN Document Server

    Kuan, Hui-Shun

    2015-01-01

    Biopolymers serve as one-dimensional tracks on which motor proteins move to perform their biological roles. Motor protein phenomena have inspired theoretical models of one-dimensional transport, crowding, and jamming. Experiments studying the motion of Xklp1 motors on reconstituted antiparallel microtubule overlaps demonstrated that motors recruited to the overlap walk toward the plus end of individual microtubules and frequently switch between filaments. We study a model of this system that couples the totally asymmetric simple exclusion process (TASEP) for motor motion with switches between antiparallel filaments and binding kinetics. We determine steady-state motor density profiles for fixed-length overlaps using exact and approximate solutions of the continuum differential equations and compare to kinetic Monte Carlo simulations. The center region, far from the overlap ends, has a constant motor density as one would na\\"ively expect. However, rather than following a simple binding equilibrium, the center ...

  9. Self-Reduction Rate of a Microtubule

    OpenAIRE

    Hiramatsu, Takashi; Matsui, Tetsuo; Sakakibara, Kazuhiko

    2006-01-01

    We formulate and study a quantum field theory of a microtubule, a basic element of living cells. Following the quantum theory of consciousness by Hameroff and Penrose, we let the system to reduce to one of the classical states without measurement if certain conditions are satisfied(self-reductions), and calculate the self-reduction time $\\tau_N$ (the mean interval between two successive self-reductions) of a cluster consisting of more than $N$ neighboring tubulins (basic units composing a mic...

  10. ASTER based velocity profile of glaciers in the Nanga Parbat region, western Himalaya

    Science.gov (United States)

    Parkes, A. T.; Haritashya, U. K.

    2011-12-01

    Glaciers, in general, are highly sensitive to climate fluctuations making them important indicators of climate change. Overall, lack of data on this region is troubling for the amount of hydrological importance and climatic forecasts these glaciers hold. Therefore, this study aims to measure glacier velocity on selected glaciers using cross-correlation techniques. One of the main problems with determining the amount of loss or perhaps gain in glacier mass is determining their velocity. The Himalayan glaciers are inaccessible in most areas and field measurements can be impossible, which creates a problem when determining the velocity of glaciers. Consequently, we generated velocity profiles of glaciers in the Nanga Parbat region of the western Himalaya using 2009 and 2010 ASTER satellite data. Our glacier fluctuation study have shown oscillating behavior of these glaciers; however, our preliminary velocity result indicates high velocity on most of these glaciers. These results are the first ever velocity profile generated for this region and would be able to help understand glacier dynamics in a much more comprehensive manner.

  11. The effect of salinity on different developmental stages of an endemic annual plant, Aster laurentianus (Asteraceae).

    Science.gov (United States)

    Houle, G; Morel, L; Reynolds, C; Siégel, J

    2001-01-01

    Salinity reduces substrate water potential, thereby restricting water and nutrient uptake by plants; salinity may also cause ionic imbalance and toxicity. Because substrate salinity fluctuates through the growing season, a plant may be exposed to different salinity levels, at various stages of development, with potentially significant consequences on population dynamics. Here, we present the results of a study of the effect of substrate salinity on seed germination, seedling emergence, and growth of Aster laurentianus, an annual marsh plant, endemic to the Gulf of St. Lawrence and potentially threatened. Seed germination was reduced in low salt concentration (10 g sea salt/L) and completely inhibited by salinity levels >/=20 g sea salt/L. However, this inhibiting effect was reversible: seeds from the salt treatments germinated readily after being washed in distilled water. Though seedling emergence was diminished at low salinity levels, postemergence survival was little affected. Plant growth was reduced, but net carbon assimilation rate was not affected by high salinity levels. Increased root respiration and respiratory costs associated with salt tolerance might have contributed to lower C accumulation at higher salinity levels. All developmental processes considered are thus negatively affected by substrate salinity, with potentially significant consequences on population abundance and distribution in salt marshes. Yet, the tolerance of this species to high salinity levels after seedling emergence is remarkable. Seed germination represents a major bottleneck in the species life cycle, potentially controlling local distribution and abundance in the natural habitat. PMID:11159127

  12. Observations of microtubules and microtubule-microfilament associations in osmotically treated cells of Micrasterias denticulata Bréb.

    Science.gov (United States)

    Neuhaus-Url, G; Kiermayer, O

    1982-06-01

    As an extension of the observation and interpretation regarding the different microtubule systems of Micrasterias denticulata [12, 19], the existence of intertubular structures, such as microfilaments, which are strongly marked in osmotically treated cells, is especially interesting. The complex of microtubules and microfilaments occurs during post-telophase nuclear migration, probably engaged in the mechanism of movement. The arrangement of microtubules either parallel or perpendicular to the nuclear membrane is characteristic for the stage of nuclear migration. Another microtubule system, the microtubule band in the cortical protoplasm of the isthmus region [12], is described during morphogenesis of the new half cell. Osmotically treated cells in the stage of septum formation demonstrate the presence of cross-linked microtubules near the plasmalemma and microtubule bundles, situated in the protoplasm between the secondary wall and the chloroplast, probably representing the microtubule system in the cortical protoplasm of the old half cell described by Kiermayer [12, 16]. The frequent appearance of microtubules and intertubular structures in differentiating cells of Micrasterias denticulata after osmotic treatment is discussed along with implication for stabilization of microtubules, cross bridges, and microfilaments. PMID:6889505

  13. Remote sensing of volcanic plumes using the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER)

    Science.gov (United States)

    Henney, Lorna Alison

    The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) has been used to quantify SO2 emissions from passively degassing volcanoes. This dissertation explores ASTER's capability to detect SO 2 with satellite validation, enhancement techniques and extensive processing of images at a variety of volcanoes. ASTER is compared to the Mini UV Spectrometer (MUSe), a ground based instrument, to determine if reasonable SO2 fluxes can be quantified from a plume emitted from Lascar, Chile. The two sensors were in good agreement with ASTER proving to be a reliable detector of SO2. ASTER illustrated the advantages of imaging a plume in 2D, with better temporal resolution than the MUSe. SO2 plumes in ASTER imagery are not always discernible in the raw TIR data. Principal Component Analysis (PCA) and Decorrelation Stretch (DCS) enhancement techniques were compared to determine how well they highlight a variety of volcanic plumes. DCS produced a consistent output and the composition of the plumes was easy to identify from explosive eruptions. As the plumes became smaller and lower in altitude they became harder to distinguish using DCS. PCA proved to be better at identifying smaller low altitude plumes. ASTER was used to investigate SO2 emissions at Lascar, Chile. Activity at Lascar has been characterized by cyclic behavior and persistent degassing (Matthews et al. 1997). Previous studies at Lascar have primarily focused on changes in thermal infrared anomalies, neglecting gas emissions. Using the SO2 data along with changes in thermal anomalies and visual observations it is evident that Lascar is at the end an eruptive cycle that began in 1993. Declining gas emissions and crater temperatures suggest that the conduit is sealing. ASTER and the Ozone Monitoring Instrument (OMI) were used to determine the annual contribution of SO2 to the troposphere from the Central and South American volcanic arcs between 2000 and 2011. Fluxes of 3.4 Tg/a for Central America and 3

  14. Microtubule Associated Proteins in Plants and the Processes They Manage

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Microtubule associated proteins (MAPs) are proteins that physically bind to microtubules in eukaryotes. MAPs play important roles in regulating the polymerization and organization of microtubules and in using the ensuing microtubule arrays to carry out a variety of cellular functions. In plants, MAPs manage the construction, repositioning, and dismantling of four distinct microtubule arrays throughout the cell cycle. Three of these arrays, the cortical array, the preprophase band,and the phragmoplast, are prominent to plants and are responsible for facilitating cell wall deposition and modification,transducing signals, demarcating the plane of cell division, and forming the new cell plate during cytokinesis, This review highlights important aspects of how MAPs in plants establish and maintain microtubule arrays as well as regulate cell growth, cell division, and cellular responses to the environment.

  15. Validation of ASTER Surface Temperature Data with In Situ Measurements to Evaluate Heat Islands in Complex Urban Areas

    OpenAIRE

    Bonggeun Song; Kyunghun Park

    2014-01-01

    This study compared Advanced Spaceborne Thermal Emission Reflection Radiometer (ASTER) surface temperature data with in situ measurements to validate the use of ASTER data for studying heat islands in urban settings with complex spatial characteristics. Eight sites in Changwon, Korea, were selected for analyses. Surface temperature data were extracted from the thermal infrared (TIR) band of ASTER on four dates during the summer and fall of 2012, and corresponding in situ measurements of tempe...

  16. The Tubulin Binding Mode of Microtubule Stabilizing Agents Studied by Electron Crystallography

    Science.gov (United States)

    Nettles, James H.; Downing, Kenneth H.

    Since tubulin was discovered in 1967, drug probes have been used to manipulate mechanisms of microtubule polymerization and disassembly. In parallel, advances in optical imagery, electron microscopy, along with both electron and X-ray diffraction have provided ability to "see" the molecular underpinning of these machines. Nanoscale mapping of different tubulin polymers formed in the presence of different drugs and cofactors provide a context for examining the dynamic features relevant to their biological activity. Models built from EM maps have been used to understand the binding of stabilizing drugs such as taxanes and epothilones, to predict more effective molecules, and to explain mutation based resistance. Here, we discuss drug binding in the context of different polymeric forms and propose a trigger mechanism associated with microtubules' dynamic instability.

  17. Association of Adenovirus with the Microtubule Organizing Center

    OpenAIRE

    Bailey, Christopher J.; Crystal, Ronald G.; Leopold, Philip L.

    2003-01-01

    Adenoviruses (Ad) must deliver their genomes to the nucleus of the target cell to initiate an infection. Following entry into the cell and escape from the endosome, Ad traffics along the microtubule cytoskeleton toward the nucleus. In the final step in Ad trafficking, Ad must leave the microtubule and establish an association with the nuclear envelope. We hypothesized that in cells lacking a nucleus, the capsid moves to and associates with the microtubule organizing center (MTOC). To test thi...

  18. GDP-Tubulin Incorporation into Growing Microtubules Modulates Polymer Stability.

    OpenAIRE

    Valiron, Odile; Arnal, Isabelle; Caudron, Nicolas; Job, Didier

    2010-01-01

    Microtubule growth proceeds through the endwise addition of nucleotide-bound tubulin dimers. The microtubule wall is composed of GDP-tubulin subunits, which are thought to come exclusively from the incorporation of GTP-tubulin complexes at microtubule ends followed by GTP hydrolysis within the polymer. The possibility of a direct GDP-tubulin incorporation into growing polymers is regarded as hardly compatible with recent structural data. Here, we have examined GTP-tubulin and GDP-tubulin inco...

  19. Aster images for discrimination of agricultural use areas in Colombia

    International Nuclear Information System (INIS)

    The advance of geographical information technology has led to the placement of new sensors for earth observation. ASTER (Advanced Space borne Thermal Emission and Reflection Radiometer) is considered as a latest generation sensor. It has special characteristics that places it as an alternative for studies of vegetation cover on earth. This work is based on its spatial, spectral and radiometric features to discriminate agricultural areas in the irrigation district of USOCOELLO in Colombia. We used a level 1B image from 2006, geometrically corrected, re sampled and its radiance values transformed into reflectance values allowing us to make two compositions: original images (VNIR-SWIR) and fusion images in IHS transformation. The thematic legend was established from the classification scheme Corine Land Cover - Colombia, defining 10 representative coverage categories in the image. The maximum likelihood classifier was used in the allocation phase. In the process of verifying and quantifying the level of accuracy, it was used, as ground truth, the database of geographical area at the site in the same date that the image was taken, obtaining an estimating a global reliability of 75 % for VNIR - SWIR images; if the variability of phenological stages of crops (rice, maize and sorghum) in the area and an important space contrast in the fusion image are taken into account, the obtained Kappa index was 0,75, which means that there is a substantial degree of agreement.

  20. Drosophila Stathmin: A Microtubule-destabilizing Factor Involved in Nervous System Formation

    OpenAIRE

    Ozon, Sylvie; Guichet, Antoine; Gavet, Olivier; Roth, Siegfried; Sobel, André

    2002-01-01

    Stathmin is a ubiquitous regulatory phosphoprotein, the generic element of a family of neural phosphoproteins in vertebrates that possess the capacity to bind tubulin and interfere with microtubule dynamics. Although stathmin and the other proteins of the family have been associated with numerous cell regulations, their biological roles remain elusive, as in particular inactivation of the stathmin gene in the mouse resulted in no clear deleterious phenotype. We identified stathmin phosphoprot...

  1. Role of microtubules in the intracellular distribution of tobacco mosaic virus movement protein

    OpenAIRE

    Más, Paloma; Beachy, Roger N.

    2000-01-01

    Despite its central role in virus infection, little is known about the mechanisms of intracellular trafficking of virus components within infected cells. In this study, we followed the dynamics of tobacco mosaic virus movement protein (MP) distribution in living protoplasts after disruption of microtubules (MTs) by cold treatment and subsequent rewarming to 29°C. At early stages of infection, cold treatment (4°C) caused the accumulation of MP fused to green fluores...

  2. The nucleation of microtubules in Aspergillus nidulans germlings

    Directory of Open Access Journals (Sweden)

    Andrade-Monteiro Cristina de

    1999-01-01

    Full Text Available Microtubules are filaments composed of dimers of alpha- and beta-tubulins, which have a variety of functions in living cells. In fungi, the spindle pole bodies usually have been considered to be microtubule-organizing centers. We used the antimicrotubule drug Benomyl in block/release experiments to depolymerize and repolymerize microtubules in Aspergillus nidulans germlings to learn more about the microtubule nucleation process in this filamentous fungus. Twenty seconds after release from Benomyl short microtubules were formed from several bright (immunofluorescent dots distributed along the germlings, suggesting that microtubule nucleation is randomly distributed in A. nidulans germlings. Since nuclear movement is dependent on microtubules in A. nidulans we analyzed whether mutants defective in nuclear distribution along the growing hyphae (nud mutants have some obvious microtubule defect. Cytoplasmic, astral and spindle microtubules were present and appeared to be normal in all nud mutants. However, significant changes in the percentage of short versus long mitotic spindles were observed in nud mutants. This suggests that some of the nuclei of nud mutants do not reach the late stage of cell division at normal temperatures.

  3. Calculation of the Electromagnetic Field Around a Microtubule

    Directory of Open Access Journals (Sweden)

    D. Havelka

    2009-01-01

    Full Text Available Microtubules are important structures in the cytoskeleton which organizes the cell. A single microtubule is composed of electrically polar structures, tubulin heterodimers, which have a strong electric dipole moment. Vibrations are expected to be generated in microtubules, thus tubulin heterodimers oscillate as electric dipoles. This gives rise to an electromagnetic field which is detected around the cells. We calculate here the electromagnetic field of microtubules if they are excited at 1 GHz. This paper includes work done for the bachelor thesis of the first author. 

  4. Producing Conditional Mutants for Studying Plant Microtubule Function

    Energy Technology Data Exchange (ETDEWEB)

    Richard Cyr

    2009-09-29

    The cytoskeleton, and in particular its microtubule component, participates in several processes that directly affect growth and development in higher plants. Normal cytoskeletal function requires the precise and orderly arrangement of microtubules into several cell cycle and developmentally specific arrays. One of these, the cortical array, is notable for its role in directing the deposition of cellulose (the most prominent polymer in the biosphere). An understanding of how these arrays form, and the molecular interactions that contribute to their function, is incomplete. To gain a better understanding of how microtubules work, we have been working to characterize mutants in critical cytoskeletal genes. This characterization is being carried out at the subcellular level using vital microtubule gene constructs. In the last year of funding colleagues have discovered that gamma-tubulin complexes form along the lengths of cortical microtubules where they act to spawn new microtubules at a characteristic 40 deg angle. This finding complements nicely the finding from our lab (which was funded by the DOE) showing that microtubule encounters are angle dependent; high angles encounters results in catastrophic collisions while low angle encounters result in favorable zippering. The finding of a 40 deg spawn of new microtubules from extant microtubule, together with aforementioned rules of encounters, insures favorable co-alignment in the array. I was invited to write a New and Views essay on this topic and a PDF is attached (News and Views policy does not permit funding acknowledgments and so I was not allowed to acknowledge support from the DOE).

  5. How biological microtubules may avoid decoherence

    International Nuclear Information System (INIS)

    Full text: Entangled superpositions persisting for hundreds of milliseconds in protein assemblies such as microtubules (MTs) are proposed in biological functions, e.g. quantum computation relevant to consciousness in the Penrose-Hameroff 'Orch OR' model. Cylindrical polymers of the protein tubulin, MTs organize cell activities. The obvious question is how biological quantum states could avoid decoherence, e.g. in the brain at 37.6 degrees centigrade. Screening/sheelding: tubulin protein states/functions are governed by van der Waals London forces, quantum interactions among clouds of delocalizable electrons in nonpolar 'hydrophobic' intra-protein pockets screened from external van der Waals thermal interactions. Such pockets include amino acid resonance structures benzene and indole rings. (Anesthetic gases erase consciousness solely by interfering with London forces in hydrophobic pockets in various brain proteins). Hence tubulin states may act as superpositioned qubits also shielded at the MT level by counter-ion Debye plasma layers (due to charged C-termini tails on tubulin) and by water-ordering actin gels which embed MTs in a quasi-solid. Biological systems may also exploit thermodynamic gradients to give extremely low effective temperatures. Decoherence free subspaces: paradoxically, a system coupled strongly to its environment through certain degrees of freedom can effectively 'freeze' other degrees of freedom (quantum Zeno effect), enabling coherent superpositions and entanglement to persist. Metabolic energy supplied to MT collective dynamics (e.g. Froehlich coherence) can cause Bose-Einstein condenzation and counter decoherence as lasers avoid decoherence at room temperature. Topological quantum error correction: MT lattice structure reveals various helical winding paths through adjacent tubulins which follow the Fibonacci series. Propagation/interactions of quasi-particles along these paths may process information. As proposed by Kitaev (1997), various

  6. Motor Protein Accumulation on Antiparallel Microtubule Overlaps.

    Science.gov (United States)

    Kuan, Hui-Shun; Betterton, Meredith D

    2016-05-10

    Biopolymers serve as one-dimensional tracks on which motor proteins move to perform their biological roles. Motor protein phenomena have inspired theoretical models of one-dimensional transport, crowding, and jamming. Experiments studying the motion of Xklp1 motors on reconstituted antiparallel microtubule overlaps demonstrated that motors recruited to the overlap walk toward the plus end of individual microtubules and frequently switch between filaments. We study a model of this system that couples the totally asymmetric simple exclusion process for motor motion with switches between antiparallel filaments and binding kinetics. We determine steady-state motor density profiles for fixed-length overlaps using exact and approximate solutions of the continuum differential equations and compare to kinetic Monte Carlo simulations. Overlap motor density profiles and motor trajectories resemble experimental measurements. The phase diagram of the model is similar to the single-filament case for low switching rate, while for high switching rate we find a new (to our knowledge) low density-high density-low density-high density phase. The overlap center region, far from the overlap ends, has a constant motor density as one would naïvely expect. However, rather than following a simple binding equilibrium, the center motor density depends on total overlap length, motor speed, and motor switching rate. The size of the crowded boundary layer near the overlap ends is also dependent on the overlap length and switching rate in addition to the motor speed and bulk concentration. The antiparallel microtubule overlap geometry may offer a previously unrecognized mechanism for biological regulation of protein concentration and consequent activity. PMID:27166811

  7. Motor Protein Accumulation on Antiparallel Microtubule Overlaps

    Science.gov (United States)

    Kuan, Hui-Shun; Betterton, Meredith D.

    2016-05-01

    Biopolymers serve as one-dimensional tracks on which motor proteins move to perform their biological roles. Motor protein phenomena have inspired theoretical models of one-dimensional transport, crowding, and jamming. Experiments studying the motion of Xklp1 motors on reconstituted antiparallel microtubule overlaps demonstrated that motors recruited to the overlap walk toward the plus end of individual microtubules and frequently switch between filaments. We study a model of this system that couples the totally asymmetric simple exclusion process (TASEP) for motor motion with switches between antiparallel filaments and binding kinetics. We determine steady-state motor density profiles for fixed-length overlaps using exact and approximate solutions of the continuum differential equations and compare to kinetic Monte Carlo simulations. Overlap motor density profiles and motor trajectories resemble experimental measurements. The phase diagram of the model is similar to the single-filament case for low switching rate, while for high switching rate we find a new low density-high density-low density-high density phase. The overlap center region, far from the overlap ends, has a constant motor density as one would naively expect. However, rather than following a simple binding equilibrium, the center motor density depends on total overlap length, motor speed, and motor switching rate. The size of the crowded boundary layer near the overlap ends is also dependent on the overlap length and switching rate in addition to the motor speed and bulk concentration. The antiparallel microtubule overlap geometry may offer a previously unrecognized mechanism for biological regulation of protein concentration and consequent activity.

  8. In vivo FRET imaging revealed a regulatory role of RanGTP in kinetochore-microtubule attachments via Aurora B kinase.

    Directory of Open Access Journals (Sweden)

    Yoke-Peng Lee

    Full Text Available Under the fluctuating circumstances provided by the innate dynamics of microtubules and opposing tensions resulted from microtubule-associated motors, it is vital to ensure stable kinetochore-microtubule attachments for accurate segregation. However, a comprehensive understanding of how this regulation is mechanistically achieved remains elusive. Using our newly designed live cell FRET time-lapse imaging, we found that post-metaphase RanGTP is crucial in the maintenance of stable kinetochore-microtubule attachments by regulating Aurora B kinase via the NES-bearing Mst1. More importantly, our study demonstrates that by ensuring stable alignment of metaphase chromosomes prior to segregation, RanGTP is indispensible in governing the genomic integrity and the fidelity of cell cycle progression. Our findings suggest an additional role of RanGTP beyond its known function in mitotic spindle assembly during the prometaphase-metaphase transition.

  9. Use of ASTER and MODIS thermal infrared data to quantify heat flow and hydrothermal change at Yellowstone National Park

    Science.gov (United States)

    Vaughan, R. Greg; Keszthelyi, Laszlo P.; Lowenstern, Jacob B.; Jaworowski, Cheryl; Heasler, Henry

    2012-01-01

    The overarching aim of this study was to use satellite thermal infrared (TIR) remote sensing to monitor geothermal activity within the Yellowstone geothermal area to meet the missions of both the U.S. Geological Survey and the Yellowstone National Park Geology Program. Specific goals were to: 1) address the challenges of monitoring the surface thermal characteristics of the > 10,000 spatially and temporally dynamic thermal features in the Park (including hot springs, pools, geysers, fumaroles, and mud pots) that are spread out over ~ 5000 km2, by using satellite TIR remote sensing tools (e.g., ASTER and MODIS), 2) to estimate the radiant geothermal heat flux (GHF) for Yellowstone's thermal areas, and 3) to identify normal, background thermal changes so that significant, abnormal changes can be recognized, should they ever occur (e.g., changes related to tectonic, hydrothermal, impending volcanic processes, or human activities, such as nearby geothermal development). ASTER TIR data (90-m pixels) were used to estimate the radiant GHF from all of Yellowstone's thermal features and update maps of thermal areas. MODIS TIR data (1-km pixels) were used to record background thermal radiance variations from March 2000 through December 2010 and establish thermal change detection limits. A lower limit for the radiant GHF estimated from ASTER TIR temperature data was established at ~ 2.0 GW, which is ~ 30–45% of the heat flux estimated through geochemical thermometry. Also, about 5 km2 of thermal areas was added to the geodatabase of mapped thermal areas. A decade-long time-series of MODIS TIR radiance data was dominated by seasonal cycles. A background subtraction technique was used in an attempt to isolate variations due to geothermal changes. Several statistically significant perturbations were noted in the time-series from Norris Geyser Basin, however many of these did not correspond to documented thermal disturbances. This study provides concrete examples of the

  10. Emerging microtubule targets in glioma therapy

    Czech Academy of Sciences Publication Activity Database

    Katsetos, C.D.; Reginato, M.J.; Baas, P.W.; D'Agostino, L.; Legido, A.; Tuszynski, J. A.; Dráberová, Eduarda; Dráber, Pavel

    2015-01-01

    Roč. 22, č. 1 (2015), s. 49-72. ISSN 1071-9091 R&D Projects: GA MŠk LH12050; GA MZd NT14467 Grant ostatní: GA AV ČR M200521203PIPP; NIH(US) R01 NS028785; Philadelphia Health Education Corporation (PHEC)–St. Christopher’s Hospital for Children Reunified Endowment (C.D.K.)(US) 323256 Institutional support: RVO:68378050 Keywords : glioma tumorigenesis * glioblastoma * tubulin * microtubules Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.232, year: 2014

  11. Pattern formation of cortical microtubules and cellulose microfibrils

    NARCIS (Netherlands)

    Lindeboom, J.J.

    2012-01-01

    In this thesis we study the roles of microtubules at the plasma membrane and the cellulose microfibrils in the cell wall and how they are organized. This topic is introduces in chapter 1. In chapter 2 we study the formation of the transverse cortical microtubule array that is characteristic for elon

  12. Structural microtubule cap: Stability, catastrophe, rescue, and third state

    DEFF Research Database (Denmark)

    Flyvbjerg, H.; Chretien, D.; Janosi, I.M.

    2002-01-01

    Microtubules polymerize from GTP-liganded tubulin dinners, but are essentially made of GDP-liganded tubulin. We investigate the tug-of-war resulting from the fact that GDP-liganded tubulin favors a curved configuration, but is forced to remain in a straight one when part of a microtubule. We poin...

  13. Mapping advanced argillic alteration zones with ASTER and Hyperion data in the Andes Mountains of Peru

    Science.gov (United States)

    Ramos, Yuddy; Goïta, Kalifa; Péloquin, Stéphane

    2016-04-01

    This study evaluates Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) and Hyperion hyperspectral sensor datasets to detect advanced argillic minerals. The spectral signatures of some alteration clay minerals, such as dickite and alunite, have similar absorption features; thus separating them using multispectral satellite images is a complex challenge. However, Hyperion with its fine spectral bands has potential for good separability of features. The Spectral Angle Mapper algorithm was used in this study to map three advanced argillic alteration minerals (alunite, kaolinite, and dickite) in a known alteration zone in the Peruvian Andes. The results from ASTER and Hyperion were analyzed, compared, and validated using a Portable Infrared Mineral Analyzer field spectrometer. The alterations corresponding to kaolinite and alunite were detected with both ASTER and Hyperion (80% to 84% accuracy). However, the dickite mineral was identified only with Hyperion (82% accuracy).

  14. Post-polymerization crosstalk between the actin cytoskeleton and microtubule network.

    Science.gov (United States)

    Joo, E Emily; Yamada, Kenneth M

    2016-05-01

    Cellular cytoskeletal systems play many pivotal roles in living organisms by controlling cell shape, division, and migration, which ultimately govern morphology, physiology, and functions of animals. Although the cytoskeletal systems are distinct and play different roles, there is growing evidence that these diverse cytoskeletal systems coordinate their functions with each other. This coordination between cytoskeletal systems, often termed cytoskeletal crosstalk, has been identified when the dynamic state of one individual system affects the other system. In this review, we briefly describe some well-established examples of crosstalk between cytoskeletal systems and then introduce a newly discovered form of crosstalk between the actin cytoskeleton and microtubule network that does not appear to directly alter polymerization or depolymerization of either system. The biological impact and possible significance of this post-polymerization crosstalk between actin and microtubules will be discussed in detail. PMID:27058810

  15. Role of the Number of Microtubules in Chromosome Segregation during Cell Division

    CERN Document Server

    Bertalan, Zsolt; La Porta, Caterina A M; Zapperi, Stefano

    2015-01-01

    Faithful segregation of genetic material during cell division requires alignment of chromosomes between two spindle poles and attachment of their kinetochores to each of the poles. Failure of these complex dynamical processes leads to chromosomal instability (CIN), a characteristic feature of several diseases including cancer. While a multitude of biological factors regulating chromosome congression and bi-orientation have been identified, it is still unclear how they are integrated so that coherent chromosome motion emerges from a large collection of random and deterministic processes. Here we address this issue by a three dimensional computational model of motor-driven chromosome congression and bi-orientation during mitosis. Our model reveals that successful cell division requires control of the total number of microtubules: if this number is too small bi-orientation fails, while if it is too large not all the chromosomes are able to congress. The optimal number of microtubules predicted by our model compa...

  16. Asymptotic Analysis of Microtubule-Based Transport by Multiple Identical Molecular Motors

    CERN Document Server

    McKinley, Scott A; Fricks, John; Kramer, Peter R

    2011-01-01

    We describe a system of stochastic differential equations (SDEs) which model the interaction between processive molecular motors, such as kinesin and dynein, and the biomolecular cargo they tow as part of microtubule-based intracellular transport. We show that the classical experimental environment fits within a parameter regime which is qualitatively distinct from conditions one expects to find in living cells. Through an asymptotic analysis of our system of SDEs, we develop a means for applying in vitro observations of the nonlinear response by motors to forces induced on the attached cargo to make analytical predictions for two parameter regimes that have thus far eluded direct experimental observation: 1) highly viscous in vivo transport and 2) dynamics when multiple identical motors are attached to the cargo and microtubule.

  17. Discrimination of iron ore deposits of granulite terrain of Southern Peninsular India using ASTER data

    Science.gov (United States)

    Rajendran, Sankaran; Thirunavukkarasu, A.; Balamurugan, G.; Shankar, K.

    2011-04-01

    This work describes a new image processing technique for discriminating iron ores (magnetite quartzite deposits) and associated lithology in high-grade granulite region of Salem, Southern Peninsular India using visible, near-infrared and short wave infrared reflectance data of Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER). Image spectra show that the magnetite quartzite and associated lithology of garnetiferrous pyroxene granulite, hornblende biotite gneiss, amphibolite, dunite, and pegmatite have absorption features around spectral bands 1, 3, 5, and 7. ASTER band ratios ((1 + 3)/2, (3 + 5)/4, (5 + 7)/6) in RGB are constructed by summing the bands representing the shoulders of absorption features as a numerator, and the band located nearest the absorption feature as a denominator to map iron ores and band ratios ((2 + 4)/3, (5 + 7)/6, (7 + 9)/8) in RGB for associated lithology. The results show that ASTER band ratios ((1 + 3)/2, (3 + 5)/4, (5 + 7)/6) in a Red-Green-Blue (RGB) color combination identifies the iron ores much better than previously published ASTER band ratios analysis. A Principal Component Analysis (PCA) is applied to reduce redundant information in highly correlated bands. PCA (3, 2, and 1 for iron ores and 5, 4, 2 for granulite rock) in RGB enabled the discrimination between the iron ores and garnetiferrous pyroxene granulite rock. Thus, this image processing technique is very much suitable for discriminating the different types of rocks of granulite region. As outcome of the present work, the geology map of Salem region is provided based on the interpretation of ASTER image results and field verification work. It is recommended that the proposed methods have great potential for mapping of iron ores and associated lithology of granulite region with similar rock units of granulite regions of Southern Peninsular India. This work also demonstrates the ability of ASTER's to provide information on iron ores, which is valuable

  18. KIF7 Controls the Proliferation of Cells of the Respiratory Airway through Distinct Microtubule Dependent Mechanisms.

    Directory of Open Access Journals (Sweden)

    Garry L Coles

    2015-10-01

    Full Text Available The cell cycle must be tightly coordinated for proper control of embryonic development and for the long-term maintenance of organs such as the lung. There is emerging evidence that Kinesin family member 7 (Kif7 promotes Hedgehog (Hh signaling during embryonic development, and its misregulation contributes to diseases such as ciliopathies and cancer. Kif7 encodes a microtubule interacting protein that controls Hh signaling through regulation of microtubule dynamics within the primary cilium. However, whether Kif7 has a function in nonciliated cells remains largely unknown. The role Kif7 plays in basic cell biological processes like cell proliferation or cell cycle progression also remains to be elucidated. Here, we show that Kif7 is required for coordination of the cell cycle, and inactivation of this gene leads to increased cell proliferation in vivo and in vitro. Immunostaining and transmission electron microscopy experiments show that Kif7dda/dda mutant lungs are hyperproliferative and exhibit reduced alveolar epithelial cell differentiation. KIF7 depleted C3H10T1/2 fibroblasts and Kif7dda/dda mutant mouse embryonic fibroblasts have increased growth rates at high cellular densities, suggesting that Kif7 may function as a general regulator of cellular proliferation. We ascertained that in G1, Kif7 and microtubule dynamics regulate the expression and activity of several components of the cell cycle machinery known to control entry into S phase. Our data suggest that Kif7 may function to regulate the maintenance of the respiratory airway architecture by controlling cellular density, cell proliferation, and cycle exit through its role as a microtubule associated protein.

  19. Synergistic Use of Satellite Volcano Detection and Science: A Fifteen Year Perspective of ASTER on Terra

    Science.gov (United States)

    Ramsey, M. S.

    2014-12-01

    The success of Terra-based observations using the ASTER instrument of active volcanic processes early in the mission gave rise to a funded NASA program designed to both increase the number of ASTER observations following an eruption and validate the satellite data. The urgent request protocol (URP) system for ASTER grew out of this initial study and has now operated in conjunction with and the support of the Alaska Volcano Observatory, the University of Alaska Fairbanks, the University of Hawaii, the USGS Land Processes DAAC, and the ASTER science team. The University of Pittsburgh oversees this rapid response/sensor-web system, which until 2011 had focused solely on the active volcanoes in the North Pacific region. Since that time, it has been expanded to operate globally with AVHRR and MODIS and now ASTER VNIR/TIR data are being acquired at numerous erupting volcanoes around the world. This program relies on the increased temporal resolution of AVHRR/MODIS midwave infrared data to trigger the next available ASTER observation, which results in ASTER data as frequently as every 2-5 days. For many targets, the URP has increased the observational frequency over active eruptions by as much 50%. The data have been used for operational response to new eruptions, longer-term scientific studies such as capturing detailed changes in lava domes/flows, pyroclastic flows and lahars. These data have also been used to infer the emplacement of new lava lobes, detect endogenous dome growth, and interpret hazardous dome collapse events. The emitted TIR radiance from lava surfaces has also been used effectively to model composition, texture and degassing. Now, this long-term archive of volcanic image data is being mined to provide statistics on the expectations of future high-repeat TIR data such as that proposed for the NASA HyspIRI mission. In summary, this operational/scientific program utilizing the unique properties of ASTER and the Terra mission has shown the potential for

  20. Reducing the Discrepancy Between ASTER and MODIS Land Surface Temperature Products

    Directory of Open Access Journals (Sweden)

    Changqing Ke

    2007-12-01

    Full Text Available Human-induced global warming has significantly increased the importance ofsatellite monitoring of land surface temperature (LST on a global scale. The MODerate-resolution Imaging Spectroradiometer (MODIS provides a 1-km resolution LST productwith almost daily coverage of the Earth, invaluable to both local and global change studies.The Advanced Spaceborne Thermal Emission Reflection Radiometer (ASTER provides aLST product with a high spatial resolution of 90-m and a 16-day recurrent cycle,simultaneously acquired at the same height and nadir view as MODIS. ASTER andMODIS are complementary in resolution, offering a unique opportunity for scale-relatedstudies. ASTER and MODIS LST have been widely used but the errors in LST were mostlydisregarded. Correction of ASTER-to-MODIS LST discrepancies is essential for studiesreliant upon the joint use of these sensors. In this study, we compared three correctionapproaches: the Wan et al.’s approach, the refined Wan et al.’s approach, and thegeneralized split window (GSW algorithm based approach. The Wan et al.’s approachcorrects the MODIS 1-km LST using MODIS 5-km LST. The refined approach modifiesthe Wan et al.’s approach through incorporating ASTER emissivity and MODIS 5-km data.The GSW algorithm approach does not use MODIS 5-km but only ASTER emissivity data. We examined the case over a semi-arid terrain area for the part of the Loess Plateau of China. All the approaches reduced the ASTER-to-MODIS LST discrepancy effectively. With terrain correction, the original ASTER-to-MODIS LST difference reduced from 2.7±1.28 K to -0.1±1.87 K for the Wan et al.’s approach, 0.2±1.57 K for the refined approach, and 0.1±1.33 K for the GSW algorithm based approach. Among all the approaches, the GSW algorithm based approach performed best in terms of mean, standard deviation, root mean square root, and correlation coefficient.

  1. Stochastic models for plant microtubule self-organization and structure.

    Science.gov (United States)

    Eren, Ezgi C; Dixit, Ram; Gautam, Natarajan

    2015-12-01

    One of the key enablers of shape and growth in plant cells is the cortical microtubule (CMT) system, which is a polymer array that forms an appropriately-structured scaffolding in each cell. Plant biologists have shown that stochastic dynamics and simple rules of interactions between CMTs can lead to a coaligned CMT array structure. However, the mechanisms and conditions that cause CMT arrays to become organized are not well understood. It is prohibitively time-consuming to use actual plants to study the effect of various genetic mutations and environmental conditions on CMT self-organization. In fact, even computer simulations with multiple replications are not fast enough due to the spatio-temporal complexity of the system. To redress this shortcoming, we develop analytical models and methods for expeditiously computing CMT system metrics that are related to self-organization and array structure. In particular, we formulate a mean-field model to derive sufficient conditions for the organization to occur. We show that growth-prone dynamics itself is sufficient to lead to organization in presence of interactions in the system. In addition, for such systems, we develop predictive methods for estimation of system metrics such as expected average length and number of CMTs over time, using a stochastic fluid-flow model, transient analysis, and approximation algorithms tailored to our problem. We illustrate the effectiveness of our approach through numerical test instances and discuss biological insights. PMID:25700800

  2. Application Analysis of Global Public Data Resources ASTER GDEM%全球公众数据资源ASTER GDEM的应用研究

    Institute of Scientific and Technical Information of China (English)

    张涛

    2015-01-01

    Based on the global public data resources ASTER GDEM (space borne thermal emission and reflection ra⁃diometer global digital elevation model) data publicly announced by the USA space agency (NASA),this paper con⁃ducted practical processing and research, and carried out statistical validation on its accuracy.%本文利用美国太空总署(NASA)对外公布的全球公众数据资源ASTER GDEM(星载热发射和反射辐射仪全球数字高程模型)数据进行了实践性处理和研究,并对其精度进行统计验证。

  3. Are Coiled-Coils of Dimeric Kinesins Unwound during Their Walking on Microtubule?

    OpenAIRE

    Duan, Zhao-Wen; Xie, Ping; Li, Wei; Wang, Peng-Ye

    2012-01-01

    Dimeric kinesin motor proteins such as homodimeric kinesin-1, homodimeric Ncd and heterodimeric Kar3/Vik1are composed of two head domains which are connected together by a rod-shaped, coiled-coil stalk. Despite the extensive and intensive studies on structures, kinetics, dynamics and walking mechanism of the dimers, whether their coiled-coils are unwound or not during their walking on the microtubule is still an unclear issue. Here, we try to clarify this issue by using molecular dynamics sim...

  4. Microtubule-associated Proteins 1 (MAP1) Promote Human Immunodeficiency Virus Type I (HIV-1) Intracytoplasmic Routing to the Nucleus

    Science.gov (United States)

    Fernandez, Juliette; Portilho, Débora M.; Danckaert, Anne; Munier, Sandie; Becker, Andreas; Roux, Pascal; Zambo, Anaba; Shorte, Spencer; Jacob, Yves; Vidalain, Pierre-Olivier; Charneau, Pierre; Clavel, François; Arhel, Nathalie J.

    2015-01-01

    After cell entry, HIV undergoes rapid transport toward the nucleus using microtubules and microfilaments. Neither the cellular cytoplasmic components nor the viral proteins that interact to mediate transport have yet been identified. Using a yeast two-hybrid screen, we identified four cytoskeletal components as putative interaction partners for HIV-1 p24 capsid protein: MAP1A, MAP1S, CKAP1, and WIRE. Depletion of MAP1A/MAP1S in indicator cell lines and primary human macrophages led to a profound reduction in HIV-1 infectivity as a result of impaired retrograde trafficking, demonstrated by a characteristic accumulation of capsids away from the nuclear membrane, and an overall defect in nuclear import. MAP1A/MAP1S did not impact microtubule network integrity or cell morphology but contributed to microtubule stabilization, which was shown previously to facilitate infection. In addition, we found that MAP1 proteins interact with HIV-1 cores both in vitro and in infected cells and that interaction involves MAP1 light chain LC2. Depletion of MAP1 proteins reduced the association of HIV-1 capsids with both dynamic and stable microtubules, suggesting that MAP1 proteins help tether incoming viral capsids to the microtubular network, thus promoting cytoplasmic trafficking. This work shows for the first time that following entry into target cells, HIV-1 interacts with the cytoskeleton via its p24 capsid protein. Moreover, our results support a role for MAP1 proteins in promoting efficient retrograde trafficking of HIV-1 by stimulating the formation of stable microtubules and mediating the association of HIV-1 cores with microtubules. PMID:25505242

  5. Microtubule self-organisation by reaction-diffusion processes causes collective transport and organisation of cellular particles

    Directory of Open Access Journals (Sweden)

    Demongeot Jacques

    2004-06-01

    Full Text Available Abstract Background The transport of intra-cellular particles by microtubules is a major biological function. Under appropriate in vitro conditions, microtubule preparations behave as a 'complex' system and show 'emergent' phenomena. In particular, they form dissipative structures that self-organise over macroscopic distances by a combination of reaction and diffusion. Results Here, we show that self-organisation also gives rise to a collective transport of colloidal particles along a specific direction. Particles, such as polystyrene beads, chromosomes, nuclei, and vesicles are carried at speeds of several microns per minute. The process also results in the macroscopic self-organisation of these particles. After self-organisation is completed, they show the same pattern of organisation as the microtubules. Numerical simulations of a population of growing and shrinking microtubules, incorporating experimentally realistic reaction dynamics, predict self-organisation. They forecast that during self-organisation, macroscopic parallel arrays of oriented microtubules form which cross the reaction space in successive waves. Such travelling waves are capable of transporting colloidal particles. The fact that in the simulations, the aligned arrays move along the same direction and at the same speed as the particles move, suggest that this process forms the underlying mechanism for the observed transport properties. Conclusions This process constitutes a novel physical chemical mechanism by which chemical energy is converted into collective transport of colloidal particles along a given direction. Self-organisation of this type provides a new mechanism by which intra cellular particles such as chromosomes and vesicles can be displaced and simultaneously organised by microtubules. It is plausible that processes of this type occur in vivo.

  6. The organization of microtubules and microtubule coils in giant platelet disorders.

    OpenAIRE

    White, J. G.; Sauk, J. J.

    1984-01-01

    Normal human platelets are characteristically discoid in shape. The lentiform appearance is supported by a circumferential band of microtubules lying just under the cell membrane along its greatest circumference. Some of the cells from patients with giant platelet disorders are also disk-shaped, but the majority of their huge platelets are spherical. In the present study platelets from patients with the Gray platelet syndrome (GPS), May-Hegglin anomaly (MHA), and Epstein's syndrome (ES) were ...

  7. Microtubules in the Cerebral Cortex: Role in Memory and Consciousness

    Science.gov (United States)

    Woolf, Nancy J.

    This chapter raises the question whether synaptic connections in the cerebral cortex are adequate in accounting for higher cognition, especially cognition involving multimodal processing. A recent and novel approach to brain mechanics is outlined, one that involves microtubules and microtubule-associated protein-2 (MAP2). In addition to effects on the neuronal membrane, neurotransmitters exert actions on microtubules. These neurotransmitter effects alter the MAP2 phosphorylation state and rates of microtubule polymerization and transport. It is argued that these processes are important to the physical basis of memory and consciousness. In support of this argument, MAP2 is degraded with learning in discrete cortical modules. How this relates to synaptic change related to learning is unknown. The specific proposal is advanced that learning alters microtubules in the subsynaptic zone lying beneath the synapse, and that this forms the physical basis of long-term memory storage because microtubule networks determine the synapse strength by directing contacts with actin filaments and transport of synaptic proteins. It is argued that this is more probable than memory-related physical storage in the synapse itself. Comparisons to consciousness are made and it is concluded that there is a link between microtubules, memory and consciousness.

  8. Spatiotemporal relationships between growth and microtubule orientation as revealed in living root cells of Arabidopsis thaliana transformed with green-fluorescent-protein gene construct GFP-MBD

    Science.gov (United States)

    Granger, C. L.; Cyr, R. J.

    2001-01-01

    Arabidopsis thaliana plants were transformed with GFP-MBD (J. Marc et al., Plant Cell 10: 1927-1939, 1998) under the control of a constitutive (35S) or copper-inducible promoter. GFP-specific fluorescence distributions, levels, and persistence were determined and found to vary with age, tissue type, transgenic line, and individual plant. With the exception of an increased frequency of abnormal roots of 35S GFP-MBD plants grown on kanamycin-containing media, expression of GFP-MBD does not appear to affect plant phenotype. The number of leaves, branches, bolts, and siliques as well as overall height, leaf size, and seed set are similar between wild-type and transgenic plants as is the rate of root growth. Thus, we conclude that the transgenic plants can serve as a living model system in which the dynamic behavior of microtubules can be visualized. Confocal microscopy was used to simultaneously monitor growth and microtubule behavior within individual cells as they passed through the elongation zone of the Arabidopsis root. Generally, microtubules reoriented from transverse to oblique or longitudinal orientations as growth declined. Microtubule reorientation initiated at the ends of the cell did not necessarily occur simultaneously in adjacent neighboring cells and did not involve complete disintegration and repolymerization of microtubule arrays. Although growth rates correlated with microtubule reorientation, the two processes were not tightly coupled in terms of their temporal relationships, suggesting that other factor(s) may be involved in regulating both events. Additionally, microtubule orientation was more defined in cells whose growth was accelerating and less stringent in cells whose growth was decelerating, indicating that microtubule-orienting factor(s) may be sensitive to growth acceleration, rather than growth per se.

  9. Assembly of bipolar microtubule structures by passive cross-linkers and molecular motors

    Science.gov (United States)

    Johann, D.; Goswami, D.; Kruse, K.

    2016-06-01

    During cell division, sister chromatids are segregated by the mitotic spindle, a bipolar assembly of interdigitating antiparallel polar filaments called microtubules. The spindle contains the midzone, a stable region of overlapping antiparallel microtubules, that is essential for maintaining bipolarity. Although a lot is known about the molecular players involved, the mechanism underlying midzone formation and maintenance is still poorly understood. We study the interaction of polar filaments that are cross-linked by molecular motors moving directionally and by passive cross-linkers diffusing along microtubules. Using a particle-based stochastic model, we find that the interplay of motors and passive cross-linkers can generate a stable finite overlap between a pair of antiparallel polar filaments. We develop a mean-field theory to study this mechanism in detail and investigate the influence of steric interactions between motors and passive cross-linkers on the overlap dynamics. In the presence of interspecies steric interactions, passive cross-linkers mimic the behavior of molecular motors and stable finite overlaps are generated even for non-cross-linking motors. Finally, we develop a mean-field theory for a bundle of aligned polar filaments and show that they can self-organize into a spindlelike pattern. Our work suggests possible ways as to how cells can generate spindle midzones and control their extensions.

  10. Image-based compound profiling reveals a dual inhibitor of tyrosine kinase and microtubule polymerization

    Science.gov (United States)

    Tanabe, Kenji

    2016-01-01

    Small-molecule compounds are widely used as biological research tools and therapeutic drugs. Therefore, uncovering novel targets of these compounds should provide insights that are valuable in both basic and clinical studies. I developed a method for image-based compound profiling by quantitating the effects of compounds on signal transduction and vesicle trafficking of epidermal growth factor receptor (EGFR). Using six signal transduction molecules and two markers of vesicle trafficking, 570 image features were obtained and subjected to multivariate analysis. Fourteen compounds that affected EGFR or its pathways were classified into four clusters, based on their phenotypic features. Surprisingly, one EGFR inhibitor (CAS 879127-07-8) was classified into the same cluster as nocodazole, a microtubule depolymerizer. In fact, this compound directly depolymerized microtubules. These results indicate that CAS 879127-07-8 could be used as a chemical probe to investigate both the EGFR pathway and microtubule dynamics. The image-based multivariate analysis developed herein has potential as a powerful tool for discovering unexpected drug properties. PMID:27117592

  11. ASTER and USGS EROS disaster response: emergency imaging after Hurricane Katrina

    Science.gov (United States)

    Duda, Kenneth A.; Abrams, Michael

    2005-01-01

    The value of remotely sensed imagery during times of crisis is well established, and the increasing spatial and spectral resolution in newer systems provides ever greater utility and ability to discriminate features of interest (International Charter, Space and Major Disasters, 2005). The existing suite of sensors provides an abundance of data, and enables warning alerts to be broadcast for many situations in advance. In addition, imagery acquired soon after an event occurs can be used to assist response and remediation teams in identifying the extent of the affected area and the degree of damage. The data characteristics of the Advanced Spaceborne Thermal Emission and Refl ection Radiometer (ASTER) are well-suited for monitoring natural hazards and providing local and regional views after disaster strikes. For this reason, and because of the system fl exibility in scheduling high-priority observations, ASTER is often tasked to support emergency situations. The Emergency Response coordinators at the United States Geological Survey (USGS) Center for Earth Resources Observation and Science (EROS) work closely with staff at the National Aeronautics and Space Administration (NASA) Land Processes Distributed Active Archive Center (LP DAAC) at EROS and the ASTER Science Team as they fulfi ll their mission to acquire and distribute data during critical situations. This article summarizes the role of the USGS/EROS Emergency Response coordinators, and provides further discussion of ASTER data and the images portrayed on the cover of this issue

  12. An algorithm to retrieve land surface temperature from ASTER thermal band data for agricultural drought monitoring

    Science.gov (United States)

    Qin, Zhihao; Li, Wenjuan; Gao, Maofang; Zhang, Hong'ou

    2006-09-01

    High spatial resolution ASTER data have 5 thermal bands, of which band 13 and 14 are especially suitable for land surface temperature (LST) estimation. Generally, LST retrieval from two thermal bands is done through so-called split window technique. In the past two decades above 17 split window algorithms have been proposed. However, such algorithm for ASTER data has not been reported, probably due to the new availability of the data for environmental application. In the study, a new split window algorithm has been developed for LST retrieval from ASTER data. Our algorithm only involves two essential parameters for LST retrieval while keeping the same accuracy as those having more parameters. Detailed derivation of the split window algorithm has been given in the paper, which including formulation of thermal radiation transfer equation, determination of algorithm constants, and estimation of the essential parameters. Comparison of our algorithm with the existing ones for validation of its accuracy and applicability in the real world indicates that our algorithm has an average root mean square (RMS) error of 0.67°C when transmittance has an error of 0.05 and emissivity has an error of 0.01. Thus we can conclude that our algorithm is a very good alternative for accurate LST retrieval from ASTER data. Application of the algorithm to Wuxi-Suchou region in Yangtze River Delta produces a very reseasonable LST image of the region, hence confirms the applicability of the algorithm.

  13. Improvement of dem Generation from Aster Images Using Satellite Jitter Estimation and Open Source Implementation

    Science.gov (United States)

    Girod, L.; Nuth, C.; Kääb, A.

    2015-12-01

    The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) system embarked on the Terra (EOS AM-1) satellite has been a source of stereoscopic images covering the whole globe at a 15m resolution at a consistent quality for over 15 years. The potential of this data in terms of geomorphological analysis and change detection in three dimensions is unrivaled and needs to be exploited. However, the quality of the DEMs and ortho-images currently delivered by NASA (ASTER DMO products) is often of insufficient quality for a number of applications such as mountain glacier mass balance. For this study, the use of Ground Control Points (GCPs) or of other ground truth was rejected due to the global "big data" type of processing that we hope to perform on the ASTER archive. We have therefore developed a tool to compute Rational Polynomial Coefficient (RPC) models from the ASTER metadata and a method improving the quality of the matching by identifying and correcting jitter induced cross-track parallax errors. Our method outputs more accurate DEMs with less unmatched areas and reduced overall noise. The algorithms were implemented in the open source photogrammetric library and software suite MicMac.

  14. Exploring the limits of identifying sub-pixel thermal features using ASTER TIR data

    Science.gov (United States)

    Vaughan, R. Greg; Keszthelyi, Laszlo P.; Davies, Ashley G.; Schneider, David J.; Jaworowski, Cheryl; Heasler, Henry

    2010-01-01

    Understanding the characteristics of volcanic thermal emissions and how they change with time is important for forecasting and monitoring volcanic activity and potential hazards. Satellite instruments view volcanic thermal features across the globe at various temporal and spatial resolutions. Thermal features that may be a precursor to a major eruption, or indicative of important changes in an on-going eruption can be subtle, making them challenging to reliably identify with satellite instruments. The goal of this study was to explore the limits of the types and magnitudes of thermal anomalies that could be detected using satellite thermal infrared (TIR) data. Specifically, the characterization of sub-pixel thermal features with a wide range of temperatures is considered using ASTER multispectral TIR data. First, theoretical calculations were made to define a "thermal mixing detection threshold" for ASTER, which quantifies the limits of ASTER's ability to resolve sub-pixel thermal mixing over a range of hot target temperatures and % pixel areas. Then, ASTER TIR data were used to model sub-pixel thermal features at the Yellowstone National Park geothermal area (hot spring pools with temperatures from 40 to 90 °C) and at Mount Erebus Volcano, Antarctica (an active lava lake with temperatures from 200 to 800 °C). Finally, various sources of uncertainty in sub-pixel thermal calculations were quantified for these empirical measurements, including pixel resampling, atmospheric correction, and background temperature and emissivity assumptions.

  15. Cytotype distribution at a diploid-hexaploid contact zone in Aster amellus (Asteraceae)

    Czech Academy of Sciences Publication Activity Database

    Castro, Sílvia; Loureiro, J.; Procházka, T.; Münzbergová, Zuzana

    2012-01-01

    Roč. 110, č. 5 (2012), s. 1047-1050. ISSN 0305-7364 R&D Projects: GA ČR GPP506/10/P188 Institutional research plan: CEZ:AV0Z60050516 Keywords : Aster amellus * diploid * hexaploid Subject RIV: EF - Botanics Impact factor: 3.449, year: 2012

  16. Propagation of kink—antikink pair along microtubules as a control mechanism for polymerization and depolymerization processes

    International Nuclear Information System (INIS)

    Among many types of proteinaceous filaments, microtubules (MTs) constitute the most rigid components of the cellular cytoskeleton. Microtubule dynamics is essential for many vital cellular processes such as intracellular transport, metabolism, and cell division. We investigate the nonlinear dynamics of inhomogeneous microtubulin systems and the MT dynamics is found to be governed by a perturbed sine-Gordon equation. In the presence of various competing nonlinear inhomogeneities, it is shown that this nonlinear model can lead to the existence of kink and antikink solitons moving along MTs. We demonstrate kink—antikink pair collision in the framework of Hirota's bilinearization method. We conjecture that the collisions of the quanta of energy propagating in the form of kinks and antikinks may offer a new view of the mechanism of the retrograde and anterograde transport direction regulation of motor proteins in microtubulin systems. (interdisciplinary physics and related areas of science and technology)

  17. Aged insulin granules display reduced microtubule-dependent mobility and are disposed within actin-positive multigranular bodies

    Science.gov (United States)

    Hoboth, Peter; Müller, Andreas; Ivanova, Anna; Mziaut, Hassan; Dehghany, Jaber; Sönmez, Anke; Lachnit, Martina; Meyer-Hermann, Michael; Kalaidzidis, Yannis; Solimena, Michele

    2015-01-01

    Insulin secretion is key for glucose homeostasis. Insulin secretory granules (SGs) exist in different functional pools, with young SGs being more mobile and preferentially secreted. However, the principles governing the mobility of age-distinct SGs remain undefined. Using the time-reporter insulin-SNAP to track age-distinct SGs we now show that their dynamics can be classified into three components: highly dynamic, restricted, and nearly immobile. Young SGs display all three components, whereas old SGs are either restricted or nearly immobile. Both glucose stimulation and F-actin depolymerization recruit a fraction of nearly immobile young, but not old, SGs for highly dynamic, microtubule-dependent transport. Moreover, F-actin marks multigranular bodies/lysosomes containing aged SGs. These data demonstrate that SGs lose their responsiveness to glucose stimulation and competence for microtubule-mediated transport over time while changing their relationship with F-actin. PMID:25646459

  18. Identification of interphase functions for the NIMA kinase involving microtubules and the ESCRT pathway.

    Directory of Open Access Journals (Sweden)

    Meera Govindaraghavan

    2014-03-01

    Full Text Available The Never in Mitosis A (NIMA kinase (the founding member of the Nek family of kinases has been considered a mitotic specific kinase with nuclear restricted roles in the model fungus Aspergillus nidulans. By extending to A. nidulans the results of a synthetic lethal screen performed in Saccharomyces cerevisiae using the NIMA ortholog KIN3, we identified a conserved genetic interaction between nimA and genes encoding proteins of the Endosomal Sorting Complex Required for Transport (ESCRT pathway. Absence of ESCRT pathway functions in combination with partial NIMA function causes enhanced cell growth defects, including an inability to maintain a single polarized dominant cell tip. These genetic insights suggest NIMA potentially has interphase functions in addition to its established mitotic functions at nuclei. We therefore generated endogenously GFP-tagged NIMA (NIMA-GFP which was fully functional to follow its interphase locations using live cell spinning disc 4D confocal microscopy. During interphase some NIMA-GFP locates to the tips of rapidly growing cells and, when expressed ectopically, also locates to the tips of cytoplasmic microtubules, suggestive of non-nuclear interphase functions. In support of this, perturbation of NIMA function either by ectopic overexpression or through partial inactivation results in marked cell tip growth defects with excess NIMA-GFP promoting multiple growing cell tips. Ectopic NIMA-GFP was found to locate to the plus ends of microtubules in an EB1 dependent manner, while impairing NIMA function altered the dynamic localization of EB1 and the cytoplasmic microtubule network. Together, our genetic and cell biological analyses reveal novel non-nuclear interphase functions for NIMA involving microtubules and the ESCRT pathway for normal polarized fungal cell tip growth. These insights extend the roles of NIMA both spatially and temporally and indicate that this conserved protein kinase could help integrate cell

  19. Opposing microtubule motors control motility, morphology and cargo segregation during ER-to-Golgi transport

    Directory of Open Access Journals (Sweden)

    Anna K. Brown

    2014-04-01

    Full Text Available We recently demonstrated that dynein and kinesin motors drive multiple aspects of endosomal function in mammalian cells. These functions include driving motility, maintaining morphology (notably through providing longitudinal tension to support vesicle fission, and driving cargo sorting. Microtubule motors drive bidirectional motility during traffic between the endoplasmic reticulum (ER and Golgi. Here, we have examined the role of microtubule motors in transport carrier motility, morphology, and domain organization during ER-to-Golgi transport. We show that, consistent with our findings for endosomal dynamics, microtubule motor function during ER-to-Golgi transport of secretory cargo is required for motility, morphology, and cargo sorting within vesicular tubular carriers en route to the Golgi. Our data are consistent with previous findings that defined roles for dynein-1, kinesin-1 (KIF5B and kinesin-2 in this trafficking step. Our high resolution tracking data identify some intriguing aspects. Depletion of kinesin-1 reduces the number of motile structures seen, which is in line with other findings relating to the role of kinesin-1 in ER export. However, those transport carriers that were produced had a much greater run length suggesting that this motor can act as a brake on anterograde motility. Kinesin-2 depletion did not significantly reduce the number of motile transport carriers but did cause a similar increase in run length. These data suggest that kinesins act as negative regulators of ER-to-Golgi transport. Depletion of dynein not only reduced the number of motile carriers formed but also caused tubulation of carriers similar to that seen for sorting nexin-coated early endosomes. Our data indicated that the previously observed anterograde–retrograde polarity of transport carriers in transit to the Golgi from the ER is maintained by microtubule motor function.

  20. Glacier Volume Change Estimation Using Time Series of Improved Aster Dems

    Science.gov (United States)

    Girod, Luc; Nuth, Christopher; Kääb, Andreas

    2016-06-01

    Volume change data is critical to the understanding of glacier response to climate change. The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) system embarked on the Terra (EOS AM-1) satellite has been a unique source of systematic stereoscopic images covering the whole globe at 15m resolution and at a consistent quality for over 15 years. While satellite stereo sensors with significantly improved radiometric and spatial resolution are available to date, the potential of ASTER data lies in its long consistent time series that is unrivaled, though not fully exploited for change analysis due to lack of data accuracy and precision. Here, we developed an improved method for ASTER DEM generation and implemented it in the open source photogrammetric library and software suite MicMac. The method relies on the computation of a rational polynomial coefficients (RPC) model and the detection and correction of cross-track sensor jitter in order to compute DEMs. ASTER data are strongly affected by attitude jitter, mainly of approximately 4 km and 30 km wavelength, and improving the generation of ASTER DEMs requires removal of this effect. Our sensor modeling does not require ground control points and allows thus potentially for the automatic processing of large data volumes. As a proof of concept, we chose a set of glaciers with reference DEMs available to assess the quality of our measurements. We use time series of ASTER scenes from which we extracted DEMs with a ground sampling distance of 15m. Our method directly measures and accounts for the cross-track component of jitter so that the resulting DEMs are not contaminated by this process. Since the along-track component of jitter has the same direction as the stereo parallaxes, the two cannot be separated and the elevations extracted are thus contaminated by along-track jitter. Initial tests reveal no clear relation between the cross-track and along-track components so that the latter seems not to be

  1. Validation of ASTER Surface Temperature Data with In Situ Measurements to Evaluate Heat Islands in Complex Urban Areas

    Directory of Open Access Journals (Sweden)

    Bonggeun Song

    2014-01-01

    Full Text Available This study compared Advanced Spaceborne Thermal Emission Reflection Radiometer (ASTER surface temperature data with in situ measurements to validate the use of ASTER data for studying heat islands in urban settings with complex spatial characteristics. Eight sites in Changwon, Korea, were selected for analyses. Surface temperature data were extracted from the thermal infrared (TIR band of ASTER on four dates during the summer and fall of 2012, and corresponding in situ measurements of temperature were also collected. Comparisons showed that ASTER derived temperatures were generally 4.27°C lower than temperatures collected by in situ measurements during the daytime, except on cloudy days. However, ASTER temperatures were higher by 2.23–2.69°C on two dates during the nighttime. Temperature differences between a city park and a paved area were insignificant. Differences between ASTER derived temperatures and onsite measurements are caused by a variety of factors including the application of emissivity values that do not consider the complex spatial characteristics of urban areas. Therefore, to improve the accuracy of surface temperatures extracted from infrared satellite imagery, we propose a revised model whereby temperature data is obtained from ASTER and emissivity values for various land covers are extracted based on in situ measurements.

  2. Lithological Discrimination of the Mafic-Ultramafic Complex, Huitongshan, Beishan, China:Using ASTER Data

    Institute of Scientific and Technical Information of China (English)

    Lei Liu; Jun Zhou; Dong Jiang; Dafang Zhuang; Lamin R Mansaray

    2014-01-01

    The Beishan area has more than seventy mafic-ultramafic complexes sparsely distributed in the area and is of a big potential in mineral resources related to mafic-ultramafic intrusions. Many mafic-ultramafic intrusions which are mostly in small sizes have been omitted by previous works. This research takes Huitongshan as the study area, which is a major district for mafic-ultramafic occur-rences in Beishan. Advanced spaceborne thermal emission and reflection radiometer (ASTER) data have been processed and interpreted for mapping the mafic-ultramafic complex. ASTER data were processed by different techniques that were selected based on image reflectance and laboratory emis-sivity spectra. The visible near-infrared (VNIR) and short wave infrared (SWIR) data were trans-formed using band ratios and minimum noise fraction (MNF), while the thermal infrared (TIR) data were processed using mafic index (MI) and principal components analysis (PCA). ASTER band ratios (6/8, 5/4, 2/1) in RGB image and MNF (1, 2, 4) in RGB image were powerful in distinguishing the subtle differences between the various rock units. PCA applied to all five bands of ASTER TIR imagery high-lighted marked differences among the mafic rock units and was more effective than the MI in differen-tiating mafic-ultramafic rocks. Our results were consistent with information derived from local geolog-ical maps. Based on the remote sensing results and field inspection, eleven gabbroic intrusions and a pyroxenite occurrence were recognized for the first time. A new geologic map of the Huitongshan area was created by integrating the results of remote sensing, previous geological maps and field inspection. It is concluded that the workflow of ASTER image processing, interpretation and ground inspection has great potential for mafic-ultramafic rocks identifying and relevant mineral targeting in the sparsely vegetated arid region of northwestern China.

  3. ASTER, ALI and Hyperion sensors data for lithological mapping and ore minerals exploration.

    Science.gov (United States)

    Beiranvand Pour, Amin; Hashim, Mazlan

    2014-01-01

    This paper provides a review of the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER), Advanced Land Imager (ALI), and Hyperion data and applications of the data as a tool for ore minerals exploration, lithological and structural mapping. Spectral information extraction from ASTER, ALI, and Hyperion data has great ability to assist geologists in all disciplines to map the distribution and detect the rock units exposed at the earth's surface. The near coincidence of Earth Observing System (EOS)/Terra and Earth Observing One (EO-1) platforms allows acquiring ASTER, ALI, and Hyperion imagery of the same ground areas, resulting accurate information for geological mapping applications especially in the reconnaissance stages of hydrothermal copper and gold exploration, chromite, magnetite, massive sulfide and uranium ore deposits, mineral components of soils and structural interpretation at both regional and district scales. Shortwave length infrared and thermal infrared bands of ASTER have sufficient spectral resolution to map fundamental absorptions of hydroxyl mineral groups and silica and carbonate minerals for regional mapping purposes. Ferric-iron bearing minerals can be discriminated using six unique wavelength bands of ALI spanning the visible and near infrared. Hyperion visible and near infrared bands (0.4 to 1.0 μm) and shortwave infrared bands (0.9 to 2.5 μm) allowed to produce image maps of iron oxide minerals, hydroxyl-bearing minerals, sulfates and carbonates in association with hydrothermal alteration assemblages, respectively. The techniques and achievements reviewed in the present paper can further introduce the efficacy of ASTER, ALI, and Hyperion data for future mineral and lithological mapping and exploration of the porphyry copper, epithermal gold, chromite, magnetite, massive sulfide and uranium ore deposits especially in arid and semi-arid territory. PMID:25674434

  4. NASA and USGS ASTER Expedited Satellite Data Services for Disaster Situations

    Science.gov (United States)

    Duda, K. A.

    2012-12-01

    Significant international disasters related to storms, floods, volcanoes, wildfires and numerous other themes reoccur annually, often inflicting widespread human suffering and fatalities with substantial economic consequences. During and immediately after such events it can be difficult to access the affected areas and become aware of the overall impacts, but insight on the spatial extent and effects can be gleaned from above through satellite images. The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) on the Terra spacecraft has offered such views for over a decade. On short notice, ASTER continues to deliver analysts multispectral imagery at 15 m spatial resolution in near real-time to assist participating responders, emergency managers, and government officials in planning for such situations and in developing appropriate responses after they occur. The joint U.S./Japan ASTER Science Team has developed policies and procedures to ensure such ongoing support is accessible when needed. Processing and distribution of data products occurs at the NASA Land Processes Distributed Active Archive Center (LP DAAC) located at the USGS Earth Resources Observation and Science Center in South Dakota. In addition to current imagery, the long-term ASTER mission has generated an extensive collection of nearly 2.5 million global 3,600 km2 scenes since the launch of Terra in late 1999. These are archived and distributed by LP DAAC and affiliates at Japan Space Systems in Tokyo. Advanced processing is performed to create higher level products of use to researchers. These include a global digital elevation model. Such pre-event imagery provides a comparative basis for use in detecting changes associated with disasters and to monitor land use trends to portray areas of increased risk. ASTER imagery acquired via the expedited collection and distribution process illustrates the utility and relevancy of such data in crisis situations.

  5. East-Asia land surface emissivity maps generated from Terra/ASTER data archives

    Science.gov (United States)

    Tonooka, Hideyuki; Urai, Minoru

    2009-09-01

    The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) is a high-spatial-resolution multispectral imager on the Terra satellite launched in December 1999. The ASTER thermal infrared (TIR) subsystem has five spectral bands with a spatial resolution of 90 m in the TIR spectral region, which are used for generation of the standard products of surface temperature and surface spectral emissivity. High-resolution surface emissivity at five spectral bands is unique, and is particularly useful for geological mapping. However, the emissivity product is not always easy to use, because (1) its image size is about 60 km square which is not large enough for regional-scale studies, (2) its imaged area is not fixed to the world reference system (WRS) due to a flexible pointing system, and (3) standard atmospheric correction often fails under humid conditions. Thus, in order to improve the usability of the ASTER emissivity product, we are generating land surface emissivity maps in a regional scale by applying improved retrieval algorithms and stack/mosaic processing to an ASTER orthogonal projection dataset which have been produced from the ASTER data archives by the Advanced Industrial Science and Technology (AIST), Japan. In the present paper, we introduce East-Asia land surface emissivity maps as the first result of this project. A comparison study with MODIS monthly emissivity products (MOD11C3) indicates that the generated maps give more reasonable emissivity spectra with higher spatial resolution than the MODIS emissivity products, though the maps have missing pixels in high latitude areas and humid areas.

  6. Effects of microtubule mechanics on hydrolysis and catastrophes

    International Nuclear Information System (INIS)

    We introduce a model for microtubule (MT) mechanics containing lateral bonds between dimers in neighboring protofilaments, bending rigidity of dimers, and repulsive interactions between protofilaments modeling steric constraints to investigate the influence of mechanical forces on hydrolysis and catastrophes. We use the allosteric dimer model, where tubulin dimers are characterized by an equilibrium bending angle, which changes from 0∘ to 22∘ by hydrolysis of a dimer. This also affects the lateral interaction and bending energies and, thus, the mechanical equilibrium state of the MT. As hydrolysis gives rise to conformational changes in dimers, mechanical forces also influence the hydrolysis rates by mechanical energy changes modulating the hydrolysis rate. The interaction via the MT mechanics then gives rise to correlation effects in the hydrolysis dynamics, which have not been taken into account before. Assuming a dominant influence of mechanical energies on hydrolysis rates, we investigate the most probable hydrolysis pathways both for vectorial and random hydrolysis. Investigating the stability with respect to lateral bond rupture, we identify initiation configurations for catastrophes along the hydrolysis pathways and values for a lateral bond rupture force. If we allow for rupturing of lateral bonds between dimers in neighboring protofilaments above this threshold force, our model exhibits avalanche-like catastrophe events. (papers)

  7. Quantification of asymmetric microtubule nucleation at sub-cellular structures

    Science.gov (United States)

    Zhu, Xiaodong; Kaverina, Irina

    2012-01-01

    Cell polarization is important for multiple physiological processes. In polarized cells, microtubules (MTs) are organized into a spatially polarized array. Generally, in non-differentiated cells, it is assumed that MTs are symmetrically nucleated exclusively from centrosome (microtubule organizing center, MTOC) and then reorganized into the asymmetric array. We have recently identified the Golgi complex as an additional MTOC that asymmetrically nucleates MTs toward one side of the cell. Methods used for alternative MTOC identification include microtubule re-growth after complete drug-induced depolymerization and tracking of growing microtubules using fluorescence labeled MT +TIP binding proteins in living cells. These approaches can be used for quantification of MT nucleation sites at diverse sub-cellular structures. PMID:21773933

  8. Quantification of asymmetric microtubule nucleation at sub-cellular structures

    OpenAIRE

    Zhu, Xiaodong; Kaverina, Irina

    2011-01-01

    Cell polarization is important for multiple physiological processes. In polarized cells, microtubules (MTs) are organized into a spatially polarized array. Generally, in non-differentiated cells, it is assumed that MTs are symmetrically nucleated exclusively from centrosome (microtubule organizing center, MTOC) and then reorganized into the asymmetric array. We have recently identified the Golgi complex as an additional MTOC that asymmetrically nucleates MTs toward one side of the cell. Metho...

  9. Microtubule as a Transmission Line for Ionic Currents

    Institute of Scientific and Technical Information of China (English)

    ILI(C) D.I.; SATARI(C) M.V.; RALEVI(C) N.

    2009-01-01

    We establish a new model for ionic waves along microtubules based on polyelectrolyte features of cylindrical biopolymers. The nonlinear transmission line described by a nonlinear differential equation is obtained with stable kink solution pertinent to the shape of the front of accompanying potential. The localized ionic wave could be used to explain the behavior of microtubules as biomolecular transistors capable of amplifying electrical information in neurons.

  10. Axonal tubulin and axonal microtubules: biochemical evidence for cold stability

    OpenAIRE

    1984-01-01

    Nerve extracts containing tubulin labeled by axonal transport were analyzed by electrophoresis and differential extraction. We found that a substantial fraction of the tubulin in the axons of the retinal ganglion cell of guinea pigs is not solubilized by conventional methods for preparation of microtubules from whole brain. In two-dimensional polyacrylamide gel electrophoresis this cold-insoluble tubulin was biochemically distinct from tubulin obtained from whole brain microtubules prepared b...

  11. Equilibria of idealized confined astral microtubules and coupled spindle poles.

    Directory of Open Access Journals (Sweden)

    Ivan V Maly

    Full Text Available Positioning of the mitotic spindle through the interaction of astral microtubules with the cell boundary often determines whether the cell division will be symmetric or asymmetric. This process plays a crucial role in development. In this paper, a numerical model is presented that deals with the force exerted on the spindle by astral microtubules that are bent by virtue of their confinement within the cell boundary. It is found that depending on parameters, the symmetric position of the spindle can be stable or unstable. Asymmetric stable equilibria also exist, and two or more stable positions can exist simultaneously. The theory poses new types of questions for experimental research. Regarding the cases of symmetric spindle positioning, it is necessary to ask whether the microtubule parameters are controlled by the cell so that the bending mechanics favors symmetry. If they are not, then it is necessary to ask what forces external to the microtubule cytoskeleton counteract the bending effects sufficiently to actively establish symmetry. Conversely, regarding the cases with asymmetry, it is now necessary to investigate whether the cell controls the microtubule parameters so that the bending favors asymmetry apart from any forces that are external to the microtubule cytoskeleton.

  12. Transport properties of melanosomes along microtubules interpreted by a tug-of-war model with loose mechanical coupling.

    Directory of Open Access Journals (Sweden)

    Sebastián Bouzat

    Full Text Available In this work, we explored theoretically the transport of organelles driven along microtubules by molecular motors of opposed polarities using a stochastic model that considers a Langevin dynamics for the cargo, independent cargo-motor linkers and stepping motion for the motors. It has been recently proposed that the stiffness of the motor plays an important role when multiple motors collectively transport a cargo. Therefore, we considered in our model the recently reported values for the stiffness of the cargo-motor linker determined in living cells (∼0.01 pN/nm, which is significantly lower than the motor stiffness obtained in in vitro assays and used in previous studies. Our model could reproduce the multimodal velocity distributions and typical trajectory characteristics including the properties of the reversions in the overall direction of motion observed during melanosome transport along microtubules in Xenopus laevis melanophores. Moreover, we explored the contribution of the different motility states of the cargo-motor system to the different modes of the velocity distributions and could identify the microscopic mechanisms of transport leading to trajectories compatible with those observed in living cells. Finally, by changing the attachment and detachment rates, the model could reproduce the different velocity distributions observed during melanosome transport along microtubules in Xenopus laevis melanophores stimulated for aggregation and dispersion. Our analysis suggests that active tug-of-war processes with loose mechanical coupling can account for several aspects of cargo transport along microtubules in living cells.

  13. Yeast GSK-3 kinase regulates astral microtubule function through phosphorylation of the microtubule-stabilizing kinesin Kip2.

    Science.gov (United States)

    Drechsler, Hauke; Tan, Ann Na; Liakopoulos, Dimitris

    2015-11-01

    The S. cerevisiae kinesin Kip2 stabilises astral microtubules (MTs) and facilitates spindle positioning through transport of MT-associated proteins, such as the yeast CLIP-170 homologue Bik1, dynein and the adenomatous-polyposis-coli-related protein Kar9 to the plus ends of astral MTs. Here, we show that Kip2 associates with its processivity factor Bim1, the yeast homologue of the plus-end-tracking protein EB1. This interaction requires an EB1-binding motif in the N-terminal extension of Kip2 and is negatively regulated by phosphorylation through Mck1, the yeast glycogen synthase kinase 3. In addition, Mck1-dependent phosphorylation decreases the intrinsic MT affinity of Kip2. Reduction in Kip2 phosphorylation leads to stabilisation of astral MTs, and accumulation of Kip2, dynein and Kar9 at MT plus ends, whereas loss of Mck1 function leads to defects in spindle positioning. Furthermore, we provide evidence that a subpopulation of Mck1 at the bud-cortex phosphorylates Kip2. We propose that yeast GSK-3 spatially controls astral MT dynamics and the loading of dynein and Kar9 on astral MT plus ends by regulating Kip2 interactions with Bim1 and MTs. PMID:26395399

  14. A Multi-Index Approach to Delineate Surface Water Bodies in the Pastoral Regions of Mali Using ASTER Imagery

    Science.gov (United States)

    Alemu, H.; Velpuri, N.; Senay, G. B.; Angerer, J.

    2011-12-01

    Information on the location and availability of water resources is a day-to-day challenge for pastoralists in the Sahelian region of Mali. They move seasonally along their migration corridors in search for water and forage. Satellite data can be used to map the spatial and temporal dynamics of these water resources. In this work, ASTER imagery is selected for its high (15 m) spatial resolution and suitable spectral bands for water body identification. Our research indicates that as most of the waterholes of interest in the study area are very shallow and heavily sediment-laden, using only one of those commonly used water identification indices such as the Simple Band Ratio (SBR), or the Normalized Difference Water Index (NDWI) alone does not help in effectively characterizing all the surface water bodies in the region. As a result, we used four different spectral indices to identify surface water features: (i) Simple Band Ratio (SBR), (ii) Normalized Difference Water Index (NDWI), (iii) Modified Normalized Difference Water Index (MNDWI), and (iv) the Mean Absolute Deviation (MAD) to identify and delineate surface water bodies using 91 ASTER images. Initial results indicate that the SBR method identified 17 waterholes while the NDWI 18, the MNDWI 36, and the MAD method identified 28 waterholes. However, by combining the results from the four aforementioned spectral indices following a multi-index approach, 89 waterholes that were previously unidentified by a single approach alone were identified. Furthermore, our analysis indicates that the SBR and the NDWI methods identify relatively clearer waterholes better (29% of the waterholes), whereas MNDWI and MAD proved to be good indices for identifying sediment-laden waterholes. Identifying the location and spatial distribution of surface water bodies is the first step towards monitoring their seasonal dynamics using a hydrologic modeling system, similar to an existing setup for east Africa (http

  15. Microtubule-Driven Multimerization Recruits ase1p onto Overlapping Microtubules

    OpenAIRE

    Kapitein, L. C.; Janson, M.E.; Wildenberg, van den, F.A.J.M.; Hoogenraad, C.C.; Schmidt, C. F.; Peterman, E.J.G.

    2008-01-01

    Microtubule (MT) crosslinking proteins of the ase1p/PRC1/Map65 family play a major role in the construction of MT networks such as the mitotic spindle. Most homologs in this family have been shown to localize with a remarkable specificity to sets of MTs that overlap with an antiparallel relative orientation []. Regulatory proteins bind to ase1p/PRC1/Map65 and appear to use the localization to set up precise spatial signals []. Here, we present evidence for a mechanism of localized protein mul...

  16. Electric field generated by longitudinal axial microtubule vibration modes with high spatial resolution microtubule model

    Czech Academy of Sciences Publication Activity Database

    Cifra, Michal; Havelka, D.; Deriu, M.A.

    Vol. 329. Bristol: IOP, 2011 - (Cifra, M.; Pokorny, J.; Kučera, O.), 012013 ISSN 1742-6588. [9th International Frohlich's Symposium on Electrodynamic Activity of Living Cells - Including Microtubule Coherent Modes and Cancer Cell Physics. Praha (CZ), 01.07.2011-03.07.2011] R&D Projects: GA ČR(CZ) GAP102/11/0649 Institutional research plan: CEZ:AV0Z20670512 Keywords : Anisotropic elastic * Biological self- organization * Cellular structure Subject RIV: JA - Electronics ; Optoelectronics, Electrical Engineering

  17. Adubação nitrogenada e potássica do Aster ericoides cultivado em ambiente protegido Nitrogen and potassium fertilization of Aster ericoides cultivated in greenhouse

    Directory of Open Access Journals (Sweden)

    Mônica Sartori de Camargo

    2008-06-01

    Full Text Available O Aster ericoides é uma flor de corte recentemente introduzida no Brasil com grande potencial de produção e aceitação pelo mercado consumidor, mas são escassas as informações sobre o manejo da adubação, prática fundamental para desenvolvimento e qualidade da planta. O objetivo deste trabalho foi avaliar adubações nitrogenadas e potássicas na produção e absorção de nutrientes pelo Aster ericoides (White Master cultivado em Latossolo Amarelo eutrófico em condições de estufa. O experimento foi instalado em delineamento de blocos completos em esquema fatorial (4x4 com 4 doses de N (0; 50; 75 e 100 kg ha-1 N, 4 doses de K (0; 52; 78; 104 kg ha-1 K2O e 4 repetições no segundo ciclo da planta. A população foi de 400 mil plantas por hectare. Após 105 dias, foram colhidas dez hastes de cada parcela. A produção de matéria seca de hastes e folhas, número de flores por haste, número de ramificações laterais por haste não foram influenciadas pelos tratamentos. A dose de 46 kg ha-1 de N proporcionou máxima produção de matéria seca de flores (19,40 g planta-1 e a adubação com potássio não influenciou as características avaliadas. Estes resultados mostraram que é preciso ser cauteloso com as altas adubações de N e K no solo estudado para não reduzir a produção de matéria seca de flores. Mais estudos sobre a fertilização nitrogenada e potássica devem ser realizados para definir a recomendação de doses adequadas para o cultivo de Aster ericoides em condições tropicais.The Aster ericoides is a cut flower crop recently introduced into Brazil. It has great production potential and acceptation by consumer market but exist little information about fertilization management, essential to its development and quality. In this work we evaluated the nitrogen and potassium fertilization on dry matter yield and nutrient absorption by Aster ericoides (White Master growing in a Typic Hapludox soil under greenhouse

  18. The Katanin Microtubule Severing Protein in Plants

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Katanin is a heterodimeric microtubule (MT) severing protein that uses energy from ATP hydrolysis to generate internal breaks along MTs. Katanin p60, one of the two subunits, possesses ATPase and MT-bindinglsevering activities, and the p80 subunit is responsible for targeting of katanin to certain subcellular locations. In animals, katanin plays an important role in the release of MTs from their nucleation sites in the centrosome. It is also involved in severing MTs into smaller fragments which can serve as templates for further polymerization to increase MT number during meiotic and mitotic spindle assembly. Katanin homologs are present in a wide variety of plant species. The Arabidopsis katanin homolog has been shown to possess ATP-dependent MT severing activity in vitro and exhibit a punctate localization pattern at the cell cortex and the perinuclear region. Disruption of katanin functions by genetic mutations causes a delay in the disappearance of the perinuclear MT array and results in an aberrant organization of cortical MTs in elongating cells. Consequently, katanin mutations lead to defects in cell elongation, cellulose microfibril deposition, and hormonal responses. Studies of katanin in plants provide new insights into our understanding of its roles in cellular functions.

  19. Monitoring and predicting eutrophication of Sri Lankan inland waters using ASTER satellite data

    Science.gov (United States)

    Dahanayaka, D. D. G. L.; Wijeyaratne, M. J. S.; Tonooka, H.; Minato, A.; Ozawa, S.; Perera, B. D. C.

    2014-10-01

    This study focused on determining the past changes and predicting the future trends in eutrophication of the Bolgoda North lake, Sri Lanka using in situ Chlorophyll-a (Chl-a) measurements and Advanced Spaceborne Thermal Emission and Reflectance Radiometer (ASTER) satellite data. This Lake is located in a mixed land use area with industries, some agricultural lands, middle income and high income housing, tourist hotels and low income housing. From March to October 2013, water samples from five sampling sites were collected once a month parallel to ASTER overpass and Chl-a, nitrate and phosphate contents of each sample were measured using standard laboratory methods. Cloud-free ASTER scenes over the lake during the 2000-2013 periods were acquired for Chl-a estimation and trend analysis. All ASTER images were atmospherically corrected using FLAASH software and in-situ Chl-a data were regressed with atmospherically corrected three ASTER VNIR band ratios of the same date. The regression equation of the band ratio and Chl-a content with the highest correlation, which was the green/red band ratio was used to develop algorithm for generation of 15-m resolution Chl-a distribution maps. According to the ASTER based Chl-a distribution maps it was evident that eutrophication of this lake has gradually increased from 2008-2011. Results also indicated that there had been significantly high eutrophic conditions throughout the year 2013 in several regions, especially in water stagnant areas and adjacent to freshwater outlets. Field observations showed that this lake is receiving various discharges from factories. Unplanned urbanization and inadequacy of proper facilities in the nearby industries for waste management have resulted in the eutrophication of the water body. If the present trends of waste disposal and unplanned urbanization continue, enormous environmental problems would be resulted in future. Results of the present study showed that information from satellite remote

  20. Measurements of volcanic SO2 with ASTER. Comparison with automated scanning DOAS measurements

    Science.gov (United States)

    Campion, R. A.; Salerno, G. G.; Bernard, A. M.; Burton, M.; Coheur, P.; Caltabiano, T.

    2009-12-01

    Sulfur dioxide (SO2) emitted by volcanoes has an important impact on the environment and climate and is also a critical parameter for volcano monitoring. A number of satellites operating in the ultra violet and in the Thermal infrared can measure SO2. However a lot of work has still to be done towards a rigorous validation of SO2 measurements from space. ASTER (Advanced Spaceborne Thermal Emission Reflection radiometer) acquires images in the thermal infrared (TIR) with a resolution of 90m/pixel, which enables to quantify the SO2 fluxes emitted in small-scale tropospheric plumes. ASTER images are processed with radiative transfer simulations and a band ratio algorithm to produce maps of SO2 column amounts. The band ratios (B10+B12)/B11 and B14/B11 are used for their insensitivity to variations in ground altitude and atmospheric humidity, two variables that often complicate SO2 retrievals in the TIR. Their sensitivity to surface emissivity is also reduced. So far, the ground validation of satellite SO2 measurements has been complex due to logistics difficulties and the lack of strictly simultaneous measurements. Recently the development of permanent networks of scanning DOAS on several active volcanoes has provide a wealth of ground based SO2 measurements that can be exploited for validating satellite-based measurements. We will present the results of comparisons between SO2 Column Amount (CA) and fluxes measured by ASTER and by the FLAME network of Mt. Etna. The two independent measurements sets are in good agreement in magnitude. Fluxes range from 2000 to 5000 T/days and column amounts from 0 to 4 g/m2. CAs measured by ASTER present a 0.5g/m2 random dispersion and no systematic bias compared to DOAS measurements. However the CAs measured by DOAS are subject to increase at low-scanning angles. These results constitute a rigorous ground validation of ASTER SO2, and provides valuable insights into accuracy and precision on both methodologies. Figure 1: Comparison

  1. On the significance of microtubule flexural behavior in cytoskeletal mechanics.

    Science.gov (United States)

    Mehrbod, Mehrdad; Mofrad, Mohammad R K

    2011-01-01

    Quantitative description of cell mechanics has challenged biological scientists for the past two decades. Various structural models have been attempted to analyze the structure of the cytoskeleton. One important aspect that has been largely ignored in all these modeling approaches is related to the flexural and buckling behavior of microtubular filaments. The objective of this paper is to explore the influence of this flexural and buckling behavior in cytoskeletal mechanics.In vitro the microtubules are observed to buckle in the first mode, reminiscent of a free, simply-supported beam. In vivo images of microtubules, however, indicate that the buckling mostly occurs in higher modes. This buckling mode switch takes place mostly because of the lateral support of microtubules via their connections to actin and intermediate filaments. These lateral loads are exerted throughout the microtubule length and yield a considerable bending behavior that, unless properly accounted for, would produce erroneous results in the modeling and analysis of the cytoskeletal mechanics.One of the promising attempts towards mechanical modeling of the cytoskeleton is the tensegrity model, which simplifies the complex network of cytoskeletal filaments into a combination merely of tension-bearing actin filaments and compression-bearing microtubules. Interestingly, this discrete model can qualitatively explain many experimental observations in cell mechanics. However, evidence suggests that the simplicity of this model may undermine the accuracy of its predictions, given the model's underlying assumption that "every single member bears solely either tensile or compressive behavior," i.e. neglecting the flexural behavior of the microtubule filaments. We invoke an anisotropic continuum model for microtubules and compare the bending energy stored in a single microtubule with its axial strain energy at the verge of buckling. Our results suggest that the bending energy can exceed the axial energy

  2. On the significance of microtubule flexural behavior in cytoskeletal mechanics.

    Directory of Open Access Journals (Sweden)

    Mehrdad Mehrbod

    Full Text Available Quantitative description of cell mechanics has challenged biological scientists for the past two decades. Various structural models have been attempted to analyze the structure of the cytoskeleton. One important aspect that has been largely ignored in all these modeling approaches is related to the flexural and buckling behavior of microtubular filaments. The objective of this paper is to explore the influence of this flexural and buckling behavior in cytoskeletal mechanics.In vitro the microtubules are observed to buckle in the first mode, reminiscent of a free, simply-supported beam. In vivo images of microtubules, however, indicate that the buckling mostly occurs in higher modes. This buckling mode switch takes place mostly because of the lateral support of microtubules via their connections to actin and intermediate filaments. These lateral loads are exerted throughout the microtubule length and yield a considerable bending behavior that, unless properly accounted for, would produce erroneous results in the modeling and analysis of the cytoskeletal mechanics.One of the promising attempts towards mechanical modeling of the cytoskeleton is the tensegrity model, which simplifies the complex network of cytoskeletal filaments into a combination merely of tension-bearing actin filaments and compression-bearing microtubules. Interestingly, this discrete model can qualitatively explain many experimental observations in cell mechanics. However, evidence suggests that the simplicity of this model may undermine the accuracy of its predictions, given the model's underlying assumption that "every single member bears solely either tensile or compressive behavior," i.e. neglecting the flexural behavior of the microtubule filaments. We invoke an anisotropic continuum model for microtubules and compare the bending energy stored in a single microtubule with its axial strain energy at the verge of buckling. Our results suggest that the bending energy can

  3. Urban Heat Island Analysis Using the Landsat TM Data and ASTER Data: A Case Study in Hong Kong

    OpenAIRE

    Lin Liu; Yuanzhi Zhang

    2011-01-01

    In this paper, the effect of urban heat island is analyzed using the Landsat TM data and ASTER data in 2005 as a case study in Hong Kong. Two algorithms were applied to retrieve the land surface temperature (LST) distribution from the Landsat TM and ASTER data. The spatial pattern of LST in the study area is retrieved to characterize their local effects on urban heat island. In addition, the correlation between LST and the normalized difference vegetation index (NDVI), the normalized differen...

  4. Microtubule Protofilament Number Is Modulated in a Stepwise Fashion by the Charge Density of an Enveloping Layer

    OpenAIRE

    Raviv, Uri; Nguyen, Toan; Ghafouri, Rouzbeh; Needleman, Daniel J.; Li, Youli; Miller, Herbert P.; Wilson, Leslie; Bruinsma, Robijn F.; Safinya, Cyrus R.

    2006-01-01

    Microtubules are able to adjust their protofilament (PF) number and, as a consequence, their dynamics and function, to the assembly conditions and presence of cofactors. However, the principle behind such variations is poorly understood. Using synchrotron x-ray scattering and transmission electron microscopy, we studied how charged membranes, which under certain conditions can envelop preassembled MTs, regulate the PF number of those MTs. We show that the mean PF number, 〈N〉, is modulated pri...

  5. Finding the Cell Center by a Balance of Dynein and Myosin Pulling and Microtubule Pushing: A Computational Study

    OpenAIRE

    Zhu, Jie; Burakov, Anton; Rodionov, Vladimir; Mogilner, Alex

    2010-01-01

    The centrosome position in many types of interphase cells is actively maintained in the cell center. Our previous work indicated that the centrosome is kept at the center by pulling force generated by dynein and actin flow produced by myosin contraction and that an unidentified factor that depends on microtubule dynamics destabilizes position of the centrosome. Here, we use modeling to simulate the centrosome positioning based on the idea that the balance of three forces—dyneins pulling along...

  6. Simultaneous Tracking of 3D Actin and Microtubule Strains in Individual MLO-Y4 Osteocytes under Oscillatory Flow

    OpenAIRE

    Baik, Andrew D.; Qiu, Jun; Hillman, Elizabeth M. C.; Dong, Cheng; Guo, X. Edward

    2013-01-01

    Osteocytes in vivo experience complex fluid shear flow patterns to activate mechanotransduction pathways. The actin and microtubule (MT) cytoskeletons have been shown to play an important role in the osteocyte’s biochemical response to fluid shear loading. The dynamic nature of physiologically relevant fluid flow profiles (i.e., 1 Hz oscillatory flow) impedes the ability to image and study both actin and MT cytoskeletons simultaneously in the same cell with high spatiotemporal resolution. To ...

  7. Role of microtubules in the contractile dysfunction of hypertrophied myocardium

    Science.gov (United States)

    Zile, M. R.; Koide, M.; Sato, H.; Ishiguro, Y.; Conrad, C. H.; Buckley, J. M.; Morgan, J. P.; Cooper, G. 4th

    1999-01-01

    OBJECTIVES: We sought to determine whether the ameliorative effects of microtubule depolymerization on cellular contractile dysfunction in pressure overload cardiac hypertrophy apply at the tissue level. BACKGROUND: A selective and persistent increase in microtubule density causes decreased contractile function of cardiocytes from cats with hypertrophy produced by chronic right ventricular (RV) pressure overloading. Microtubule depolymerization by colchicine normalizes contractility in these isolated cardiocytes. However, whether these changes in cellular function might contribute to changes in function at the more highly integrated and complex cardiac tissue level was unknown. METHODS: Accordingly, RV papillary muscles were isolated from 25 cats with RV pressure overload hypertrophy induced by pulmonary artery banding (PAB) for 4 weeks and 25 control cats. Contractile state was measured using physiologically sequenced contractions before and 90 min after treatment with 10(-5) mol/liter colchicine. RESULTS: The PAB significantly increased RV systolic pressure and the RV weight/body weight ratio in PAB; it significantly decreased developed tension from 59+/-3 mN/mm2 in control to 25+/-4 mN/mm2 in PAB, shortening extent from 0.21+/-0.01 muscle lengths (ML) in control to 0.12+/-0.01 ML in PAB, and shortening rate from 1.12+/-0.07 ML/s in control to 0.55+/-0.03 ML/s in PAB. Indirect immunofluorescence confocal microscopy showed that PAB muscles had a selective increase in microtubule density and that colchicine caused complete microtubule depolymerization in both control and PAB papillary muscles. Microtubule depolymerization normalized myocardial contractility in papillary muscles of PAB cats but did not alter contractility in control muscles. CONCLUSIONS: Excess microtubule density, therefore, is equally important to both cellular and to myocardial contractile dysfunction caused by chronic, severe pressure-overload cardiac hypertrophy.

  8. Chimera proteins with affinity for membranes and microtubule tips polarize in the membrane of fission yeast cells.

    Science.gov (United States)

    Recouvreux, Pierre; Sokolowski, Thomas R; Grammoustianou, Aristea; Ten Wolde, Pieter Rein; Dogterom, Marileen

    2016-02-16

    Cell polarity refers to a functional spatial organization of proteins that is crucial for the control of essential cellular processes such as growth and division. To establish polarity, cells rely on elaborate regulation networks that control the distribution of proteins at the cell membrane. In fission yeast cells, a microtubule-dependent network has been identified that polarizes the distribution of signaling proteins that restricts growth to cell ends and targets the cytokinetic machinery to the middle of the cell. Although many molecular components have been shown to play a role in this network, it remains unknown which molecular functionalities are minimally required to establish a polarized protein distribution in this system. Here we show that a membrane-binding protein fragment, which distributes homogeneously in wild-type fission yeast cells, can be made to concentrate at cell ends by attaching it to a cytoplasmic microtubule end-binding protein. This concentration results in a polarized pattern of chimera proteins with a spatial extension that is very reminiscent of natural polarity patterns in fission yeast. However, chimera levels fluctuate in response to microtubule dynamics, and disruption of microtubules leads to disappearance of the pattern. Numerical simulations confirm that the combined functionality of membrane anchoring and microtubule tip affinity is in principle sufficient to create polarized patterns. Our chimera protein may thus represent a simple molecular functionality that is able to polarize the membrane, onto which additional layers of molecular complexity may be built to provide the temporal robustness that is typical of natural polarity patterns. PMID:26831106

  9. A Class-Oriented Strategy for Features Extraction from Multidate ASTER Imagery

    Directory of Open Access Journals (Sweden)

    Nicola Crocetto

    2009-11-01

    Full Text Available In this paper we propose a hybrid classification method, adopting the best features extraction strategy for each land cover class on multidate ASTER data. To enable an effective comparison among images, Multivariate Alteration Detection (MAD transformation was applied in the pre-processing phase, because of its high level of automation and reliability in the enhancement of change information among different images. Consequently, different features identification procedures, both spectral and object-based, were implemented to overcome problems of misclassification among classes with similar spectral response. Lastly, a post-classification comparison was performed on multidate ASTER-derived land cover (LC maps to evaluate the effects of change in the study area.

  10. Quinic acids from Aster caucasicus and from transgenic callus expressing a beta-amyrin synthase.

    Science.gov (United States)

    Pecchia, Paola; Cammareri, Maria; Malafronte, Nicola; Consiglio, M Federica; Gualtieri, Maria Josefina; Conicella, Clara

    2011-11-01

    Several different classes of secondary metabolites, including flavonoids, triterpenoid saponins and quinic acid derivatives, are found in Aster spp. (Fam. Asteraceae). Several Aster compounds revealed biological as well as pharmacological activities. In this work, a phytochemical investigation of A. caucasicus evidenced the presence of quinic acid derivatives, as well as the absence of triterpene saponins. To combine in one species the production of different phytochemicals, including triterpenes, an Agrobacterium-mediated transformation of A. caucasicus was set up to introduce A. sedifolius beta-amyrin synthase (AsOXA1)-encoding gene under the control of the constitutive promoter CaMV35S. The quali-quantitative analysis of transgenic calli with ectopic expression of AsOXA1 showed, in one sample, a negligible amount of triterpene saponins combined with higher amount of quinic acid derivatives as compared with the wild type callus. PMID:22224284

  11. Digital Mapping of Soil Properties Using Multivariate Statistical Analysis and ASTER Data in an Arid Region

    Directory of Open Access Journals (Sweden)

    Said Nawar

    2015-01-01

    Full Text Available Modeling and mapping of soil properties has been identified as key for effective land degradation management and mitigation. The ability to model and map soil properties at sufficient accuracy for a large agriculture area is demonstrated using Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER imagery. Soil samples were collected in the El-Tina Plain, Sinai, Egypt, concurrently with the acquisition of ASTER imagery, and measured for soil electrical conductivity (ECe, clay content and soil organic matter (OM. An ASTER image covering the study area was preprocessed, and two predictive models, multivariate adaptive regression splines (MARS and the partial least squares regression (PLSR, were constructed based on the ASTER spectra. For all three soil properties, the results of MARS models were better than those of the respective PLSR models, with cross-validation estimated R2 of 0.85 and 0.80 for ECe, 0.94 and 0.90 for clay content and 0.79 and 0.73 for OM. Independent validation of ECe, clay content and OM maps with 32 soil samples showed the better performance of the MARS models, with R2 = 0.81, 0.89 and 0.73, respectively, compared to R2 = 0.78, 0.87 and 0.71 for the PLSR models. The results indicated that MARS is a more suitable and superior modeling technique than PLSR for the estimation and mapping of soil salinity (ECe, clay content and OM. The method developed in this paper was found to be reliable and accurate for digital soil mapping in arid and semi-arid environments.

  12. EXTRACTION OF FOREST STANDS PARAMETERS FROM ASTER DATA IN OPEN FOREST

    OpenAIRE

    M Abbasi; Riyahi Bakhtyarib, H. R.

    2012-01-01

    Tree crown size (CS) and stem number per hectare (SN) has become increasingly important for forest management and ecosystem monitoring. Tree crown size is also strongly related to other canopy structural parameters, such as diameter at breast height, tree height and biomass. For both issues, remote sensing data are attractive for their large-area and up-to-date mapping capacities. The QuickBird and ASTER imagery used in this study was acquired over Zagros Forests in southern Zagros region, Fa...

  13. Metabolic potential of microorganisms associated with the halophyte Aster tripolium L. in saline soils

    OpenAIRE

    Szymańska, Sonia; Piernik, Agnieszka; Hrynkiewicz, Katarzyna

    2014-01-01

    Increased soil salinization may be caused by a natural (e.g. climate change) and anthropogenic (e.g. improper fertilization and irrigation of agricultural land) factors. The submitted work assumes that microorganisms associated with plant halophytes have a unique metabolic properties that can stimulate plant growth under salt stress. The aim of the study was to determine the abundance and metabolic biodiversity of endophytic and rhizosphere microorganisms co-existing with Aster tripolium L. a...

  14. Seed quantity and quality in fruit heads of Aster lanceolatus Willd.: Implications for invasion success

    OpenAIRE

    Nešić Marija; Obratov-Petković Dragica; Skočajić Dragana; Bjedov Ivana

    2013-01-01

    Aster lanceolatus Willd. is a herbaceous perennial that is considered invasive in many European countries. In Serbia, this plant inhabits wet habitats and forms widespread monospecific stands. The objective of this research is to determine whether generative reproduction has an important role in the expansion of this species to new areas. In 13 different localities, fruit heads were collected from lateral and terminal parts of infructescence. Seed quantity ...

  15. Estimating Evapotranspiration from an Improved Two-Source Energy Balance Model Using ASTER Satellite Imagery

    OpenAIRE

    Qifeng Zhuang; Bingfang Wu

    2015-01-01

    Reliably estimating the turbulent fluxes of latent and sensible heat at the Earth’s surface by remote sensing is important for research on the terrestrial hydrological cycle. This paper presents a practical approach for mapping surface energy fluxes using Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) images from an improved two-source energy balance (TSEB) model. The original TSEB approach may overestimate latent heat flux under vegetative stress conditions, as has al...

  16. Reducing the Discrepancy Between ASTER and MODIS Land Surface Temperature Products

    OpenAIRE

    Changqing Ke; Yasushi Yamaguchi; Yuanbo Liu

    2007-01-01

    Human-induced global warming has significantly increased the importance ofsatellite monitoring of land surface temperature (LST) on a global scale. The MODerate-resolution Imaging Spectroradiometer (MODIS) provides a 1-km resolution LST productwith almost daily coverage of the Earth, invaluable to both local and global change studies.The Advanced Spaceborne Thermal Emission Reflection Radiometer (ASTER) provides aLST product with a high spatial resolution of 90-m and a 16-day recurrent cycle,...

  17. PEMETAAN SUHU PERMUKAAN LAUT (SPL MENGGUNAKAN CITRA SATELIT ASTER DI PERAIRAN LAUT JAWA BAGIAN BARAT MADURA

    Directory of Open Access Journals (Sweden)

    Dyah Ayu Sulistyo Rini

    2010-10-01

    Full Text Available Oceanographical temperature in Java Sea is very important to be considered. This research was combines in-site observation technique, Geographical Information System (GLS and remote sensing in order to get accurate, present and updateable data. The aim of this research is to determine the distribution of sea-surface temperature and accuration-test value in Java Sea especially on western coast of Madura using ASTER satellite imagery. This research were used software of ENVI 4.5, ILWIS 3.3, and ArcGIS 9.3 and also changed the radian value until °C. Result showed that using ASTER satellite imagery within band 10 range between 32 "C-35 "C. Band 11,between 24.9"C 25,2"C. Band 12 between 16,7"C to 17"C. Band while band 13 abd 14 between 30.7, band 28. Band 11 is more accurate compared to Band 10, 12, 13. 14, the RMS Error on band 11 showed lower value compared to the other band.Keywords: Sea-surface Temperature. ASTER satellite imagery. Java Sea, Western coast of Madura

  18. Detection of High Local Groundwater Inflow to Rock Tunnels using ASTER Satellite Images

    Directory of Open Access Journals (Sweden)

    M. Sharafi

    2013-09-01

    Full Text Available High local groundwater flow into rock tunnels may lead to a potential hazard and is an important factor influencing construction time and costs. Geological features such as fault zones and open fractures can be the source of very high local groundwater inflows. Having a reliable estimation of location groundwater inflows is essential before excavation of tunnels. To reduce the costs and time of field works, remote sensing investigations can be a good solution. The main aim of the present study is to propose a methodology for detecting the geomorphic markers of cuesta in the high local groundwater inflow to Nosoud tunnel using the satellite imagery data. For this purpose, a reflectance image from the ASTER satellite sensor was used. Our Experiments show that cuesta springs, caused by hydraulic fracturing, can be detected using the normalized difference vegetation index (NDVI map, computed on the ASTER image, and analyzing the topographic and morphometric features of the area. Moreover, observations in tunnel excavation stage showed that crossing through open fractures in hard and thick layers is the major cause of water inflow into the tunnel, which corresponds to the surface hydrogeological evidences obtained from the ASTER image.

  19. Quantitative Analysis of Tau-Microtubule Interaction Using FRET

    Directory of Open Access Journals (Sweden)

    Isabelle L. Di Maïo

    2014-08-01

    Full Text Available The interaction between the microtubule associated protein, tau and the microtubules is investigated. A fluorescence resonance energy transfer (FRET assay was used to determine the distance separating tau to the microtubule wall, as well as the binding parameters of the interaction. By using microtubules stabilized with Flutax-2 as donor and tau labeled with rhodamine as acceptor, a donor-to-acceptor distance of 54 ± 1 Å was found. A molecular model is proposed in which Flutax-2 is directly accessible to tau-rhodamine molecules for energy transfer. By titration, we calculated the stoichiometric dissociation constant to be equal to 1.0 ± 0.5 µM. The influence of the C-terminal tails of αβ-tubulin on the tau-microtubule interaction is presented once a procedure to form homogeneous solution of cleaved tubulin has been determined. The results indicate that the C-terminal tails of α- and β-tubulin by electrostatic effects and of recruitment seem to be involved in the binding mechanism of tau.

  20. Spatial organization of the Ran pathway by microtubules in mitosis.

    Science.gov (United States)

    Oh, Doogie; Yu, Che-Hang; Needleman, Daniel J

    2016-08-01

    Concentration gradients of soluble proteins are believed to be responsible for control of morphogenesis of subcellular systems, but the mechanisms that generate the spatial organization of these subcellular gradients remain poorly understood. Here, we use a newly developed multipoint fluorescence fluctuation spectroscopy technique to study the ras-related nuclear protein (Ran) pathway, which forms soluble gradients around chromosomes in mitosis and is thought to spatially regulate microtubule behaviors during spindle assembly. We found that the distribution of components of the Ran pathway that influence microtubule behaviors is determined by their interactions with microtubules, resulting in microtubule nucleators being localized by the microtubules whose formation they stimulate. Modeling and perturbation experiments show that this feedback makes the length of the spindle insensitive to the length scale of the Ran gradient, allows the spindle to assemble outside the peak of the Ran gradient, and explains the scaling of the spindle with cell size. Such feedback between soluble signaling pathways and the mechanics of the cytoskeleton may be a general feature of subcellular organization. PMID:27439876

  1. Highly Transient Molecular Interactions Underlie the Stability of Kinetochore–Microtubule Attachment During Cell Division

    Science.gov (United States)

    Zaytsev, Anatoly V.; Ataullakhanov, Fazly I.; Grishchuk, Ekaterina L.

    2013-01-01

    Chromosome segregation during mitosis is mediated by spindle microtubules that attach to chromosomal kinetochores with strong yet labile links. The exact molecular composition of the kinetochore–microtubule interface is not known but microtubules are thought to bind to kinetochores via the specialized microtubule-binding sites, which contain multiple microtubule-binding proteins. During prometaphase the lifetime of microtubule attachments is short but in metaphase it increases 3-fold, presumably owing to dephosphorylation of the microtubule-binding proteins that increases their affinity. Here, we use mathematical modeling to examine in quantitative and systematic manner the general relationships between the molecular properties of microtubule-binding proteins and the resulting stability of microtubule attachment to the protein-containing kinetochore site. We show that when the protein connections are stochastic, the physiological rate of microtubule turnover is achieved only if these molecular interactions are very transient, each lasting fraction of a second. This “microscopic” time is almost four orders of magnitude shorter than the characteristic time of kinetochore–microtubule attachment. Cooperativity of the microtubule-binding events further increases the disparity of these time scales. Furthermore, for all values of kinetic parameters the microtubule stability is very sensitive to the minor changes in the molecular constants. Such sensitivity of the lifetime of microtubule attachment to the kinetics and cooperativity of molecular interactions at the microtubule-binding site may hinder the accurate regulation of kinetochore–microtubule stability during mitotic progression, and it necessitates detailed experimental examination of the microtubule-binding properties of kinetochore-localized proteins. PMID:24376473

  2. Highly Transient Molecular Interactions Underlie the Stability of Kinetochore-Microtubule Attachment During Cell Division.

    Science.gov (United States)

    Zaytsev, Anatoly V; Ataullakhanov, Fazly I; Grishchuk, Ekaterina L

    2013-12-13

    Chromosome segregation during mitosis is mediated by spindle microtubules that attach to chromosomal kinetochores with strong yet labile links. The exact molecular composition of the kinetochore-microtubule interface is not known but microtubules are thought to bind to kinetochores via the specialized microtubule-binding sites, which contain multiple microtubule-binding proteins. During prometaphase the lifetime of microtubule attachments is short but in metaphase it increases 3-fold, presumably owing to dephosphorylation of the microtubule-binding proteins that increases their affinity. Here, we use mathematical modeling to examine in quantitative and systematic manner the general relationships between the molecular properties of microtubule-binding proteins and the resulting stability of microtubule attachment to the protein-containing kinetochore site. We show that when the protein connections are stochastic, the physiological rate of microtubule turnover is achieved only if these molecular interactions are very transient, each lasting fraction of a second. This "microscopic" time is almost four orders of magnitude shorter than the characteristic time of kinetochore-microtubule attachment. Cooperativity of the microtubule-binding events further increases the disparity of these time scales. Furthermore, for all values of kinetic parameters the microtubule stability is very sensitive to the minor changes in the molecular constants. Such sensitivity of the lifetime of microtubule attachment to the kinetics and cooperativity of molecular interactions at the microtubule-binding site may hinder the accurate regulation of kinetochore-microtubule stability during mitotic progression, and it necessitates detailed experimental examination of the microtubule-binding properties of kinetochore-localized proteins. PMID:24376473

  3. Microtubule dynamics. II. Kinetics of self-assembly

    DEFF Research Database (Denmark)

    Flyvbjerg, H.; Jobs, E.

    1997-01-01

    dependence on initial conditions-except it is known to be impossible for equilibrium reactions. This article presents a case study of a far-from-equilibrium reaction: it presents a systematic phenomenological analysis of experimental time series for the amount of final product, a biopolymer, formed from...

  4. Estimating surface fluxes over the north Tibetan Plateau area with ASTER imagery

    Directory of Open Access Journals (Sweden)

    Weiqiang Ma

    2009-01-01

    Full Text Available Surface fluxes are important boundary conditions for climatological modeling and Asian monsoon system. The recent availability of high-resolution, multi-band imagery from the ASTER (Advanced Space-borne Thermal Emission and Reflection radiometer sensor has enabled us to estimate surface fluxes to bridge the gap between local scale flux measurements using micrometeorological instruments and regional scale land-atmosphere exchanges of water and heat fluxes that are fundamental for the understanding of the water cycle in the Asian monsoon system. A parameterization method based on ASTER data and field observations has been proposed and tested for deriving surface albedo, surface temperature, Normalized Difference Vegetation Index (NDVI, Modified Soil Adjusted Vegetation Index (MSAVI, vegetation coverage, Leaf Area Index (LAI, net radiation flux, soil heat flux, sensible heat flux and latent heat flux over heterogeneous land surface in this paper. As a case study, the methodology was applied to the experimental area of the Coordinated Enhanced Observing Period (CEOP Asia-Australia Monsoon Project (CAMP on the Tibetan Plateau (CAMP/Tibet, located at the north Tibetan Plateau. The ASTER data of 24 July 2001, 29 November 2001 and 12 March 2002 was used in this paper for the case of summer, winter and spring. To validate the proposed methodology, the ground-measured surface variables (surface albedo and surface temperature and land surface heat fluxes (net radiation flux, soil heat flux, sensible heat flux and latent heat flux were compared to the ASTER derived values. The results show that the derived surface variables and land surface heat fluxes in three different months over the study area are in good accordance with the land surface status. Also, the estimated land surface variables and land surface heat fluxes are in good accordance with ground measurements, and all their absolute percentage difference (APD is less than 10% in the validation sites

  5. Inter-Comparison of ASTER and MODIS Surface Reflectance and Vegetation Index Products for Synergistic Applications to Natural Resource Monitoring

    Science.gov (United States)

    Miura, Tomoaki; Yoshioka, Hiroki; Fujiwara, Kayo; Yamamoto, Hirokazu

    2008-01-01

    Synergistic applications of multi-resolution satellite data have been of a great interest among user communities for the development of an improved and more effective operational monitoring system of natural resources, including vegetation and soil. In this study, we conducted an inter-comparison of two remote sensing products, namely, visible/near-infrared surface reflectances and spectral vegetation indices (VIs), from the high resolution Advanced Thermal Emission and Reflection Radiometer (ASTER) (15 m) and lower resolution Moderate Resolution Imaging Spectroradiometer (MODIS) (250 m – 500 m) sensors onboard the Terra platform. Our analysis was aimed at understanding the degree of radiometric compatibility between the two sensors' products due to sensor spectral bandpasses and product generation algorithms. Multiple pairs of ASTER and MODIS standard surface reflectance products were obtained at randomly-selected, globally-distributed locations, from which two types of VIs were computed: the normalized difference vegetation index and the enhanced vegetation indices with and without a blue band. Our results showed that these surface reflectance products and the derived VIs compared well between the two sensors at a global scale, but subject to systematic differences, of which magnitudes varied among scene pairs. An independent assessment of the accuracy of ASTER and MODIS standard products, in which “in-house” surface reflectances were obtained using in situ Aeronet atmospheric data for comparison, suggested that the performance of the ASTER atmospheric correction algorithm may be variable, reducing overall quality of its standard reflectance product. Atmospheric aerosols, which were not corrected for in the ASTER algorithm, were found not to impact the quality of the derived reflectances. Further investigation is needed to identify the sources of inconsistent atmospheric correction results associated with the ASTER algorithm, including additional quality

  6. Inter-Comparison of ASTER and MODIS Surface Reflectance and Vegetation Index Products for Synergistic Applications to Natural Resource Monitoring

    Directory of Open Access Journals (Sweden)

    Hirokazu Yamamoto

    2008-04-01

    Full Text Available Synergistic applications of multi-resolution satellite data have been of a great interest among user communities for the development of an improved and more effective operational monitoring system of natural resources, including vegetation and soil. In this study, we conducted an inter-comparison of two remote sensing products, namely, visible/near-infrared surface reflectances and spectral vegetation indices (VIs, from the high resolution Advanced Thermal Emission and Reflection Radiometer (ASTER (15 m and lower resolution Moderate Resolution Imaging Spectroradiometer (MODIS (250 m – 500 m sensors onboard the Terra platform. Our analysis was aimed at understanding the degree of radiometric compatibility between the two sensors’ products due to sensor spectral bandpasses and product generation algorithms. Multiple pairs of ASTER and MODIS standard surface reflectance products were obtained at randomly-selected, globally-distributed locations, from which two types of VIs were computed: the normalized difference vegetation index and the enhanced vegetation indices with and without a blue band. Our results showed that these surface reflectance products and the derived VIs compared well between the two sensors at a global scale, but subject to systematic differences, of which magnitudes varied among scene pairs. An independent assessment of the accuracy of ASTER and MODIS standard products, in which “in-house” surface reflectances were obtained using in situ Aeronet atmospheric data for comparison, suggested that the performance of the ASTER atmospheric correction algorithm may be variable, reducing overall quality of its standard reflectance product. Atmospheric aerosols, which were not corrected for in the ASTER algorithm, were found not to impact the quality of the derived reflectances. Further investigation is needed to identify the sources of inconsistent atmospheric correction results

  7. Contraction due to microtubule disruption is associated with increased phosphorylation of myosin regulatory light chain.

    OpenAIRE

    Kolodney, M S; Elson, E L

    1995-01-01

    Microtubules have been proposed to function as rigid struts which oppose cellular contraction. Consistent with this hypothesis, microtubule disruption strengthens the contractile force exerted by many cell types. We have investigated alternative explanation for the mechanical effects of microtubule disruption: that microtubules modulate the mechanochemical activity of myosin by influencing phosphorylation of the myosin regulatory light chain (LC20). We measured the force produced by a populat...

  8. Distribution of the phosphorylated microtubule-associated protein tau in developing cortical neurons.

    Science.gov (United States)

    Brion, J P; Octave, J N; Couck, A M

    1994-12-01

    During brain development, the microtubule-associated protein tau presents a transient state of high phosphorylation. We have investigated the developmental distribution of the phosphorylated fetal-type tau in the developing rat cortex and in cultures of embryonic cortical neurons, using antibodies which react with tau in a phosphorylation-dependent manner. The phosphorylated fetal-type tau was present in the developing cortex at 20 days but not at 18 days of embryonic life and was not detected before four to five days in neuronal culture. The cyclin-dependent kinase p34cdc2 was expressed only in germinal layers in the embryonic brain and was not co-localized with phosphorylated tau. After 10 days of postnatal life, the phosphorylated tau progressively disappeared from cortical neurons, disappearing first from the deepest cortical layers where neurons are ontogenetically the oldest. Phosphorylated tau was found in axons and dendrites of cortical neurons at all developmental stages whereas unphosphorylated tau tended to disappear from dendrites during development. The timing of appearance of phosphorylated tau in the cortex, by comparison with the expression of other developmental markers, indicates that phosphorylated tau is present at a high level only during the period of intense neuritic outgrowth and that it disappears during the period of neurite stabilization and synaptogenesis, concomitantly to the expression of adult tau isoforms. In control cultures and in cultures treated with colchicine, the phosphorylated tau was not associated to cold-stable and to colchicine-resistant microtubules. These in vivo results suggest that the high expression of phosphorylated tau species is correlated with the presence of a dynamic microtubule network during a period of high plasticity in the developing brain. PMID:7898684

  9. Phospholipase D activation correlates with microtubule reorganization in living plant cells

    NARCIS (Netherlands)

    P.B. Dhonukshe; A.M. Laxalt; J. Goedhart; Th.W.J. Gadella; T. Munnik

    2003-01-01

    A phospholipase D (PLD) was shown recently to decorate microtubules in plant cells. Therefore, we used tobacco BY-2 cells expressing the microtubule reporter GFP-MAP4 to test whether PLD activation affects the organization of plant microtubules. Within 30 min of adding n-butanol, a potent activator

  10. Prion protein inhibits microtubule assembly by inducing tubulin oligomerization

    International Nuclear Information System (INIS)

    A growing body of evidence points to an association of prion protein (PrP) with microtubular cytoskeleton. Recently, direct binding of PrP to tubulin has also been found. In this work, using standard light scattering measurements, sedimentation experiments, and electron microscopy, we show for First time the effect of a direct interaction between these proteins on tubulin polymerization. We demonstrate that full-length recombinant PrP induces a rapid increase in the turbidity of tubulin diluted below the critical concentration for microtubule assembly. This effect requires magnesium ions and is weakened by NaCl. Moreover, the PrP-induced light scattering structures of tubulin are cold-stable. In preparations of diluted tubulin incubated with PrP, electron microscopy revealed the presence of ∼50 nm disc-shaped structures not reported so far. These unique tubulin oligomers may form large aggregates. The effect of PrP is more pronounced under the conditions promoting microtubule formation. In these tubulin samples, PrP induces formation of the above oligomers associated with short protofilaments and sheets of protofilaments into aggregates. Noticeably, this is accompanied by a significant reduction of the number and length of microtubules. Hence, we postulate that prion protein may act as an inhibitor of microtubule assembly by inducing formation of stable tubulin oligomers

  11. Information transport by sine-Gordon solitons in microtubules

    CERN Document Server

    Abdalla, Elcio; Melgar, B C; Sedra, M B; Abdalla, Elcio; Maroufi, Bouchra; Melgar, Bertha Cuadros; Sedra, Moulay Brahim

    2001-01-01

    We study the problem of information propagation in brain microtubules. After considering the propagation of electromagnetic waves in a fluid of permanent electric dipoles, the problem reduces to the sine-Gordon wave equation in one space and one time dimensions. The problem of propagation of information is thus set.

  12. ASTER spectral analysis and lithologic mapping of the Khanneshin carbonatite volcano, Afghanistan

    Science.gov (United States)

    Mars, J.C.; Rowan, L.C.

    2011-01-01

    Advanced Spaceborne Thermal and Reflection Radiometer (ASTER) data of the early Quaternary Khanneshin carbonatite volcano located in southern Afghanistan were used to identify carbonate rocks within the volcano and to distinguish them from Neogene ferruginous polymict sandstone and argillite. The carbonatitic rocks are characterized by diagnostic CO3 absorption near 11.2 ??m and 2.31-2.33 ??m, whereas the sandstone, argillite, and adjacent alluvial deposits exhibit intense Si-O absorption near 8.7 ??m caused mainly by quartz and Al-OH absorption near 2.20 ??m due to muscovite and illite. Calcitic carbonatite was distinguished from ankeritic carbonatite in the short wave infrared (SWIR) region of the ASTER data due to a slight shift of the CO3 absorption feature toward 2.26 ??m (ASTER band 7) in the ankeritic carbonatite spectra. Spectral assessment using ASTER SWIR data suggests that the area is covered by extensive carbonatite flows that contain calcite, ankerite, and muscovite, though some areas mapped as ankeritic carbonatite on a pre existing geologic map were not identified in the ASTER data. A contact aureole shown on the geologic map was defined using an ASTER false color composite image (R = 6, G = 3, B = 1) and a logical operator byte image. The contact aureole rocks exhibit Fe2+, Al-OH, and Fe, Mg-OH spectral absorption features at 1.65, 2.2, and 2.33 ??m, respectively, which suggest that the contact aureole rocks contain musco vite, epidote, and chlorite. The contact aureole rocks were mapped using an Interactive Data Language (IDL) logical operator. A visible through short wave infrared (VNIR-SWIR) mineral and rock-type map based on matched filter, band ratio, and logical operator analysis illustrates: (1) laterally extensive calcitic carbonatite that covers most of the crater and areas northeast of the crater; (2) ankeritic carbonatite located southeast and north of the crater and some small deposits located within the crater; (3) agglomerate that

  13. Fidgetin-like 2: a microtubule-based regulator of wound healing

    Science.gov (United States)

    Charafeddine, Rabab A.; Makdisi, Joy; Schairer, David; O’Rourke, Brian P.; Diaz-Valencia, Juan D.; Chouake, Jason; Kutner, Allison; Krausz, Aimee; Adler, Brandon; Nacharaju, Parimala; Liang, Hongying; Mukherjee, Suranjana; Friedman, Joel M.; Friedman, Adam; Nosanchuk, Joshua D.; Sharp, David J.

    2015-01-01

    Wound healing is a complex process driven largely by the migration of a variety of distinct cell types from the wound margin into the wound zone. In this study, we identify the previously uncharacterized microtubule-severing enzyme, Fidgetin-like 2 (FL2), as a fundamental regulator of cell migration that can be targeted in vivo using nanoparticle-encapsulated siRNA to promote wound closure and regeneration. In vitro, depletion of FL2 from mammalian tissue culture cells results in a more than two-fold increase in the rate of cell movement, due in part to a significant increase in directional motility. Immunofluorescence analyses indicate that FL2 normally localizes to the cell edge, importantly to the leading edge of polarized cells, where it regulates the organization and dynamics of the microtubule cytoskeleton. To clinically translate these findings, we utilized a nanoparticle-based siRNA delivery platform to locally deplete FL2 in both murine full-thickness excisional and burn wounds. Topical application of FL2 siRNA nanoparticles to either wound type results in a significant enhancement in the rate and quality of wound closure both clinically and histologically relative to controls. Taken together, these results identify FL2 as a promising therapeutic target to promote the regeneration and repair of cutaneous wounds. PMID:25756798

  14. Fidgetin-Like 2: A Microtubule-Based Regulator of Wound Healing.

    Science.gov (United States)

    Charafeddine, Rabab A; Makdisi, Joy; Schairer, David; O'Rourke, Brian P; Diaz-Valencia, Juan D; Chouake, Jason; Kutner, Allison; Krausz, Aimee; Adler, Brandon; Nacharaju, Parimala; Liang, Hongying; Mukherjee, Suranjana; Friedman, Joel M; Friedman, Adam; Nosanchuk, Joshua D; Sharp, David J

    2015-09-01

    Wound healing is a complex process driven largely by the migration of a variety of distinct cell types from the wound margin into the wound zone. In this study, we identify the previously uncharacterized microtubule-severing enzyme, Fidgetin-like 2 (FL2), as a fundamental regulator of cell migration that can be targeted in vivo using nanoparticle-encapsulated small interfering RNA (siRNA) to promote wound closure and regeneration. In vitro, depletion of FL2 from mammalian tissue culture cells results in a more than twofold increase in the rate of cell movement, in part due to a significant increase in directional motility. Immunofluorescence analyses indicate that FL2 normally localizes to the cell edge, importantly to the leading edge of polarized cells, where it regulates the organization and dynamics of the microtubule cytoskeleton. To clinically translate these findings, we utilized a nanoparticle-based siRNA delivery platform to locally deplete FL2 in both murine full-thickness excisional and burn wounds. Topical application of FL2 siRNA nanoparticles to either wound type results in a significant enhancement in the rate and quality of wound closure both clinically and histologically relative to controls. Taken together, these results identify FL2 as a promising therapeutic target to promote the regeneration and repair of cutaneous wounds. PMID:25756798

  15. Analysis of the binding mode of laulimalide to microtubules: Establishing a laulimalide-tubulin pharmacophore.

    Science.gov (United States)

    Churchill, Cassandra D M; Klobukowski, Mariusz; Tuszynski, Jack A

    2016-07-01

    Laulimalide (LA) is a microtubule-stabilizing agent, currently in preclinical studies. However, studying the binding of this species and successfully synthesizing potent analogues have been challenging. The LA binding site is located between tubulin protofilaments, and therefore LA is in contact with two adjacent [Formula: see text]-tubulin units. Here, an improved model of the binding mode of LA in microtubules is presented, using the newly available crystal structure pose and an extended tubulin heterodimer complex, as well as molecular dynamics simulations. With this model, a series of LA analogues developed by Mooberry and coworkers are also analyzed in order to establish important pharmacophores in LA binding and cytotoxicity. In the side chain, [Formula: see text]-[Formula: see text] interactions are important contributors to LA binding, as are water-mediated hydrogen bonds. An intramolecular hydrogen bond is correlated with high cytotoxicity, and is dependent on macrocycle conformation. Therefore, while the epoxide and olefin groups in the macrocycle do not engage in specific interactions with the protein, they are essential contributions to an active macrocycle conformation, and therefore potency. Calculations reveal that a balance in binding affinity is important for LA activity, where the more potent compounds have larger interactions with the adjacent tubulin unit than the less-active analogs. Several modifications are suggested for the rational design of LA analogues that should not disrupt the active macrocycle conformation. PMID:26230757

  16. Statistical mechanics provides novel insights into microtubule stability and mechanism of shrinkage.

    Directory of Open Access Journals (Sweden)

    Ishutesh Jain

    2015-02-01

    Full Text Available Microtubules are nano-machines that grow and shrink stochastically, making use of the coupling between chemical kinetics and mechanics of its constituent protofilaments (PFs. We investigate the stability and shrinkage of microtubules taking into account inter-protofilament interactions and bending interactions of intrinsically curved PFs. Computing the free energy as a function of PF tip position, we show that the competition between curvature energy, inter-PF interaction energy and entropy leads to a rich landscape with a series of minima that repeat over a length-scale determined by the intrinsic curvature. Computing Langevin dynamics of the tip through the landscape and accounting for depolymerization, we calculate the average unzippering and shrinkage velocities of GDP protofilaments and compare them with the experimentally known results. Our analysis predicts that the strength of the inter-PF interaction (E(s(m has to be comparable to the strength of the curvature energy (E(b(m such that E(s(m - E(b(m ≈ 1kBT, and questions the prevalent notion that unzippering results from the domination of bending energy of curved GDP PFs. Our work demonstrates how the shape of the free energy landscape is crucial in explaining the mechanism of MT shrinkage where the unzippered PFs will fluctuate in a set of partially peeled off states and subunit dissociation will reduce the length.

  17. Comparative mineral mapping in the Colorado Mineral Belt using AVIRIS and ASTER remote sensing data

    Science.gov (United States)

    Rockwell, Barnaby W.

    2013-01-01

    This report presents results of interpretation of spectral remote sensing data covering the eastern Colorado Mineral Belt in central Colorado, USA, acquired by the Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) and Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) sensors. This study was part of a multidisciplinary mapping and data integration project at the U.S. Geological Survey that focused on long-term resource planning by land-managing entities in Colorado. The map products were designed primarily for the regional mapping and characterization of exposed surface mineralogy, including that related to hydrothermal alteration and supergene weathering of pyritic rocks. Alteration type was modeled from identified minerals based on standard definitions of alteration mineral assemblages. Vegetation was identified using the ASTER data and subdivided based on per-pixel chlorophyll content (depth of 0.68 micrometer absorption band) and dryness (fit and depth of leaf biochemical absorptions in the shortwave infrared spectral region). The vegetation results can be used to estimate the abundance of fire fuels at the time of data acquisition (2002 and 2003). The AVIRIS- and ASTER-derived mineral mapping results can be readily compared using the toggleable layers in the GeoPDF file, and by using the provided GIS-ready raster datasets. The results relating to mineral occurrence and distribution were an important source of data for studies documenting the effects of mining and un-mined, altered rocks on aquatic ecosystems at the watershed level. These studies demonstrated a high correlation between metal concentrations in streams and the presence of hydrothermal alteration and (or) pyritic mine waste as determined by analysis of the map products presented herein. The mineral mapping results were also used to delineate permissive areas for various mineral deposit types.

  18. EXTRACTION OF FOREST STANDS PARAMETERS FROM ASTER DATA IN OPEN FOREST

    Directory of Open Access Journals (Sweden)

    M. Abbasi

    2012-07-01

    Full Text Available Tree crown size (CS and stem number per hectare (SN has become increasingly important for forest management and ecosystem monitoring. Tree crown size is also strongly related to other canopy structural parameters, such as diameter at breast height, tree height and biomass. For both issues, remote sensing data are attractive for their large-area and up-to-date mapping capacities. The QuickBird and ASTER imagery used in this study was acquired over Zagros Forests in southern Zagros region, Fars province of Iran on 1 August 2005 and 1 July 2005, respectively. For the forest site investigated in this study, we concentrated on stands of Quercus Persica which is the dominant species in Zagros region. This study was conducted to investigate the capabilities of ASTER-L1B data to estimate some of forest parameters at individual tree and stand level in dry area. The forest stand parameters are crown area, crown density, average crown area. Obtaining the accuracy of classification the ground truth map was prepared by tree crown delineation using the panchromatic band of QuickBird data. Individual tree crowns were automatically delineated by color segmentation of QuickBird imagery. Simple linear regression procedure was used to show the relationships between spectral variables and the individual trees and forest stand parameters. With decreasing the crown density the effects of background will increase. Our results indicated that crown size could be accurately extracted from panchromatic band of QuickBird images especially for open forest stands. This paper demonstrates that using high-resolution satellite imagery in the open forest offers a unique opportunity for deriving single tree attributes and allowing reliable ground truth map to estimate stand structure. ASTER data and its indices showed good capability to estimate crown area in this study.

  19. Analysis of ASTER data for mapping bauxite rich pockets within high altitude lateritic bauxite, Jharkhand, India

    Science.gov (United States)

    Guha, Arindam; Singh, Vivek Kr.; Parveen, Reshma; Kumar, K. Vinod; Jeyaseelan, A. T.; Dhanamjaya Rao, E. N.

    2013-04-01

    Bauxite deposits of Jharkhand in India are resulted from the lateritization process and therefore are often associated with the laterites. In the present study, ASTER (Advanced Space borne Thermal Emission and Reflection Radiometer) image is processed to delineate bauxite rich pockets within the laterites. In this regard, spectral signatures of lateritic bauxite samples are analyzed in the laboratory with reference to the spectral features of gibbsite (main mineral constituent of bauxite) and goethite (main mineral constituent of laterite) in VNIR-SWIR (visible-near infrared and short wave infrared) electromagnetic domain. The analysis of spectral signatures of lateritic bauxite samples helps in understanding the differences in the spectral features of bauxites and laterites. Based on these differences; ASTER data based relative band depth and simple ratio images are derived for spatial mapping of the bauxites developed within the lateritic province. In order to integrate the complementary information of different index image, an index based principal component (IPC) image is derived to incorporate the correlative information of these indices to delineate bauxite rich pockets. The occurrences of bauxite rich pockets derived from density sliced IPC image are further delimited by the topographic controls as it has been observed that the major bauxite occurrences of the area are controlled by slope and altitude. In addition to above, IPC image is draped over the digital elevation model (DEM) to illustrate how bauxite rich pockets are distributed with reference to the topographic variability of the terrain. Bauxite rich pockets delineated in the IPC image are also validated based on the known mine occurrences and existing geological map of the bauxite. It is also conceptually validated based on the spectral similarity of the bauxite pixels delineated in the IPC image with the ASTER convolved laboratory spectra of bauxite samples.

  20. Self-organizing feature map neural network classification of the ASTER data based on wavelet fusion

    Institute of Scientific and Technical Information of China (English)

    HASI Bagan; MA Jianwen; LI Qiqing; HAN Xiuzhen; LIU Zhili

    2004-01-01

    Most methods for classification of remote sensing data are based on the statistical parameter evaluation with the assumption that the samples obey the normal distribution. However, more accurate classification results can be obtained with the neural network method through getting knowledge from environments and adjusting the parameter (or weight) step by step by a specific measurement. This paper focuses on the double-layer structured Kohonen self-organizing feature map (SOFM), for which all neurons within the two layers are linked one another and those of the competition layers are linked as well along the sides. Therefore, the self-adapting learning ability is improved due to the effective competition and suppression in this method. The SOFM has become a hot topic in the research area of remote sensing data classification. The Advanced Spaceborne Thermal Emission and Reflectance Radiometer (ASTER) is a new satellite-borne remote sensing instrument with three 15-m resolution bands and three 30-m resolution bands at the near infrared. The ASTER data of Dagang district, Tianjin Municipality is used as the test data in this study. At first, the wavelet fusion is carried out to make the spatial resolutions of the ASTER data identical; then, the SOFM method is applied to classifying the land cover types. The classification results are compared with those of the maximum likelihood method (MLH). As a consequence, the classification accuracy of SOFM increases about by 7% in general and, in particular, it is almost as twice as that of the MLH method in the town.

  1. SRTM DEM与ASTER DEM数据比较研究

    Institute of Scientific and Technical Information of China (English)

    李鹤元; 孙亮

    2014-01-01

    SRTM DEM是利用航天飞机雷达地形测绘获取的全球中低纬度地区地表的高分辨率雷达影像生成的DEM,它具有较高的分辨率和现势性;ASTER DEM是利用高分辨率卫星成像设备ASTER获取的立体影像生成的DEM,全球覆盖范围更广、数据分辨率更高。由于两种DEM获取机理与生产工艺不同,因此存在较大的数据差异。为了利用两种数据进行DEM数据融合与更新,需要对不同地形DEM数据进行比较研究与分析。本文选取具有高山峡谷地貌特征的某山区为实验区,运用总体统计分析、检查点法和剖面法对SRTM DEM与ASTER DEM进行数据比较研究。结果表明,SRTM DEM与ASTER DEM中误差约为45m,误差值在-150m至150m的点数量呈正态分布,在山峰与山谷处高程值差异明显。

  2. ASTER GDEM validation using LiDAR data over coastal regions of Greenland

    DEFF Research Database (Denmark)

    Hvidegaard, Sine Munk; Sørensen, Louise Sandberg; Forsberg, René

    2011-01-01

    Elevation data from airborne Light Detection and Ranging (LiDAR) campaigns are used in an attempt to evaluate the accuracy of the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) global digital elevation model (GDEM) in Greenland. The LiDAR elevation data set is characterized...... by a high spatial resolution of about 1 m and elevation accuracy of 20–30 cm root mean square error (RMSE). The LiDAR data sets used were acquired during ice-monitoring campaigns carried out from 2003 to 2008. The study areas include ice-free regions, local ice caps and the ice sheet margin. A linear...

  3. Reconstructing Holocene Glacier Changes in West Greenland From Multispectral ASTER Imagery

    Science.gov (United States)

    Huh, K.; Csatho, B.; van der Veen, C. J.; Ahn, Y.

    2006-12-01

    To understand the mass balance of the Greenland Ice Sheet and to identify mechanisms controlling that balance and Greenland's contribution to future changes in global sea level, it is crucial to construct longer temporal records, reaching back to the Little Ice Age (LIA) or beyond. The primary objectives of this project are to develop procedures for mapping glacial trimlines, marking maximum glacier extent during the LIA, and terminal moraines indicating earlier advanced terminus positions, in central west Greenland using multispectral ASTER (Advanced Spaceborne Thermal Emission and Reflection Radiometer) images. The motivation for using satellite imagery for mapping glacial-geological features is the greater spatial coverage that can be achieved, as opposed to the traditional method of field mapping in restricted areas. ASTER imagery provides spectral bands spanning from the visible to the thermal infrared bands, including two stereo bands, enabling us to map the spectral properties of the Earth's surface as well as to obtain surface topography. This poster presents examples of mapping the 3D shapes of glacial geomorphological features using supervised classification, visual interpretation and advanced pattern recognition methods, and results of the volume change computation and interpretation, focusing on the Jakobshavn drainage basin. For trimline mapping, a Digital Elevation Model (DEM) was generated from the stereo bands of the same data set, followed by orthorectification using Ground Control Points (GCPs) and checkpoints extracted from stereo aerial photographs and digital maps. Surface reflectance was estimated from the raw DN values by applying the Empirical Line Correction model for atmospheric effects. Maximum likelihood classification, in supervised mode, was applied to distinguish different land cover types. Classification of the ASTER image with nine non-thermal bands provides a good discrimination between the exposed fresh rock surfaces, moraines of

  4. An application of the Self Organizing Map Algorithm to computer aided classification of ASTER multispectral data

    Directory of Open Access Journals (Sweden)

    Ferdinando Giacco

    2008-01-01

    Full Text Available In this paper we employ the Kohonen’s Self Organizing Map (SOM as a strategy for an unsupervised analysis of ASTER multispectral (MS images. In order to obtain an accurate clusterization we introduce as input for the network, in addition to spectral data, some texture measures extracted from IKONOS images, which gives a contribution to the classification of manmade structures. After clustering of SOM outcomes, we associated each cluster with a major land cover and compared them with prior knowledge of the scene analyzed.

  5. A Project to Map and Monitor Baldcypress Forests in Coastal Louisiana, Using Landsat, MODIS, and ASTER Satellite Data

    Science.gov (United States)

    Spruce, Joseph; Sader, Steven; Smoot, James

    2012-01-01

    Cypress swamp forests of Louisiana offer many important ecological and economic benefits: wildlife habitat, forest products, storm buffers, water quality, and recreation. Such forests are also threatened by multiple factors: subsidence, salt water intrusion, sea level rise, persistent flooding, hydrologic modification, hurricanes, insect and nutria damage, timber harvesting, and land use conversion. Unfortunately, there are many information gaps regarding the type, location, extent, and condition of these forests. Better more up to date swamp forest mapping products are needed to aid coastal forest conservation and restoration work (e.g., through the Coastal Forest Conservation Initiative or CFCI). In response, a collaborative project was initiated to develop, test and demonstrate cypress swamp forest mapping products, using NASA supported Landsat, ASTER, and MODIS satellite data. Research Objectives are: Develop, test, and demonstrate use of Landsat and ASTER data for computing new cypress forest classification products and Landsat, ASTER, and MODIS satellite data for detecting and monitoring swamp forest change

  6. Cell edges accumulate gamma tubulin complex components and nucleate microtubules following cytokinesis in Arabidopsis thaliana.

    Directory of Open Access Journals (Sweden)

    Chris Ambrose

    Full Text Available Microtubules emanate from distinct organizing centers in fungal and animal cells. In plant cells, by contrast, microtubules initiate from dispersed sites in the cell cortex, where they then self-organize into parallel arrays. Previous ultrastructural evidence suggested that cell edges participate in microtubule nucleation but so far there has been no direct evidence for this. Here we use live imaging to show that components of the gamma tubulin nucleation complex (GCP2 and GCP3 localize at distinct sites along the outer periclinal edge of newly formed crosswalls, and that microtubules grow predominantly away from these edges. These data confirm a role for cell edges in microtubule nucleation, and suggest that an asymmetric distribution of microtubule nucleation factors contributes to cortical microtubule organization in plants, in a manner more similar to other kingdoms than previously thought.

  7. Dissecting the molecular mechanism underlying the intimate relationship between cellulose microfibrils and cortical microtubules

    Directory of Open Access Journals (Sweden)

    Lei eLei

    2014-03-01

    Full Text Available A central question in plant cell development is how the cell wall determines directional cell expansion and therefore the final shape of the cell. As the major load-bearing component of the cell wall, cellulose microfibrils are laid down transversely to the axis of elongation, thus forming a spring-like structure that reinforces the cell laterally and while favoring longitudinal expansion in most growing cells. Mounting evidence suggests that cortical microtubules organize the deposition of cellulose microfibrils, but the precise molecular mechanisms linking microtubules to cellulose organization have remained unclear until the recent discovery of CSI1, a linker protein between the cortical microtubules and the cellulose biosynthesizing machinery. In this review, we will focus on the intimate relationship between cellulose microfibrils and cortical microtubules, in particular, we will discuss microtubule arrangement and cell wall architecture, the linkage between cellulose synthase complexes and microtubules, and the feedback mechanisms between cell wall and microtubules.

  8. Sulfo-SMCC Prevents Annealing of Taxol-Stabilized Microtubules In Vitro

    CERN Document Server

    Prabhune, Meenakshi; Schmidt, Christoph F

    2015-01-01

    Microtubule structure and functions have been widely studied in vitro and in cells. Research has shown that cysteines on tubulin play a crucial role in the polymerization of microtubules. Here, we show that blocking sulfhydryl groups of cysteines in taxol-stabilized polymerized microtubules with a commonly used chemical crosslinker prevents temporal end-to-end annealing of microtubules in vitro. This can dramatically affect the length distribution of the microtubules. The crosslinker sulfosuccinimidyl 4-(N-maleimidomethyl)cyclohexane-1-carboxylate, sulfo-SMCC, consists of a maleimide and a N-hydroxysuccinimide ester group to bind to sulfhydryl groups and primary amines, respectively. Interestingly, addition of a maleimide dye alone does not show the same prevention of annealing in stabilized microtubules. This study shows that the sulfhydryl groups of cysteines of tubulin that are vital for the polymerization are also important for the subsequent annealing of microtubules.

  9. Implementation of a very large atmospheric correction lookup table for ASTER using a relational database management system

    Science.gov (United States)

    Murray, Alex T.; Eng, Bjorn T.; Thome, Kurtis J.

    1996-11-01

    The advanced spaceborne thermal emission and reflection radiometer (ASTER) is designed to provide a high resolution map of the Earth in both visible, near-infrared, and thermal spectral regions of the electromagnetic spectrum. The ASTER science team has developed several standard data product algorithms, but the most complex and computing-intensive of these is the estimation of surface radiance and reflectance values, which is done by modeling and correcting for the effects of the atmosphere. The algorithm for atmospheric correction in the visible bands sensed by ASTER calls fur the use of a very large atmospheric correction look up table (ACLUT). The ACLUT contains coefficients which describe atmospheric effects on ASTER data under various conditions. The parameters used to characterize the atmosphere and its effects on radiation in the ASTER bands include aerosol and molecular optical depth, aerosol size distribution, single scattering albedo, and solar, nadir view, and azimuth angles. The ACLUT coefficients are produced by thousands of runs of a radiative transfer code (RTC) program produced by Phil Slater and Kurt Thome of U. of A. The final version of ACLUT is expected to be in the neighborhood of 10 gigabytes. The RDBMS Sybase is used to manage the process of generating the ACLUT as well as to host the table and service queries on it. Queries on the table are made using ASTER band number and seven floating-point values as keys. The floating-point keys do not necessarily exactly match key values in the database, so the query involves a hierarchical closest-fit search. All aspects of table implementation are described.

  10. A Forest Fire Risk Assessment Using ASTER Images in Peninsular Malaysia

    Institute of Scientific and Technical Information of China (English)

    PENG Guang-xiong; LI Jing; CHEN Yun-hao; NORIZAN Abdul-patah

    2007-01-01

    Based on the physical concept of heat energy of pre-ignition, a new fire susceptibility index (FSI) is used to estimate forest fire risk. This physical basis allows calculation of ignition probabilities and comparisons of fire risk across eco-regions. The computation of the index requires inputs of fuel temperature and fuel moisture content (FMC), both of which can be estimated using remote sensing data. While ASTER data for land surface temperatures (LST) was used as proxys for fuel temperatures, fuel moisture content is estimated by regression technique utilizing the ratio NDVI/LST of ASTER data. FSIs are computed in peninsular Malaysia for nine days before the fires of 2004 and 2005 and validated with fire occurrence data. Results show that the FSI increases as the day approaches the fire day. This trend can be observed clearly about four days before the day of fire. It suggests that FSI can be a good estimator of fire risk. The physical basis provides a more meaningful FSI, allows calculation of ignition probabilities and facilitates the development of a future class of fire risk models. FSI can be used to compare fire risk across different eco-regions and time periods. FSI retains the flexibility to be localized to a vegetation type or eco-regions for improved performance.

  11. Molecular and microscopical detection of aster yellows phytoplasma associated with infected parsnip.

    Science.gov (United States)

    Khadhair, A H; Evans, I R

    2000-04-01

    Typical phytoplasma yellows symptoms were observed in parsnip (Pastinaca sativa L.) plants grown around Edmonton, Alberta, Canada. Examination of ultrathin sections of leaf midribs by electron microscopy revealed numerous phytoplasma bodies localized in the phloem cells. DNA extracted from the infected leaves was amplified with a 16S rDNA universal primer pair P1/P6 giving the expected PCR product of 1.5 kb. The phytoplasma was confirmed as a member of the aster yellows (AY) group by amplification with the specific primer pair R16(1)/F1/R1 that was designed on the basis of AY phytoplasma 16S rDNA sequences. In the nested PCR assays, the expected DNA fragment of 1.1 kb was amplified with this specific primer set. Similar restriction patterns were found for the 1.1 kb PCR products of the phytoplasma isolated from parsnip and an AY phytoplasma control after digestion with restriction endonucleases AluI, HhaI, KpnI and RsaI. This is the first reported observation of aster yellows in parsnip in Canada. PMID:10830901

  12. Spectral properties and ASTER-based alteration mapping of Masahim volcano facies, SE Iran

    Science.gov (United States)

    Tayebi, Mohammad H.; Tangestani, Majid H.; Vincent, Robert K.; Neal, Devin

    2014-10-01

    This study applies Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) data and the Mixture Tuned Matched Filtering (MTMF) algorithm to map the sub-pixel distribution of alteration minerals associated with the Masahim volcano, SE Iran for understanding the spatial relationship between alteration minerals and volcano facies. Investigations of the alteration mineralogy were conducted using field-spectroscopy, X-ray diffraction (XRD) analysis and ASTER Short Wave Infrared (SWIR) spectral data. In order to spectrally characterize the stratovolcano deposits, lithological units and alteration minerals, the volcano was divided into three facies: the Central, Proximal, and Medial-distal facies. The reflectance spectra of rock samples show absorption features of a number of minerals including white mica, kaolinite, montmorillonite, illite, goethite, hematite, jarosite, opal, and chlorite. The end-members of key alteration minerals including sericite (phyllic zone), kaolinite (argillic zone) and chlorite (propylitic zone) were extracted from imagery using the Pixel Purity Index (PPI) method and were used to map alteration minerals. Accuracy assessment through field observations was used to verify the fraction maps. The results showed that most prominent altered rocks situated at the central facies of volcano. The alteration minerals were discriminated with the coefficient of determination (R2) of 0.74, 0.81, and 0.68 for kaolinite, sericite, and chlorite, respectively. The results of this study have the potential to refine the map of alteration zones in the Masahim volcano.

  13. A posteriori error analysis for hydro-mechanical couplings and implementation in Code-Aster

    International Nuclear Information System (INIS)

    We analyse approximations by finite elements in space and finite differences in time of coupled Hydro-Mechanical (HM) problems related to the quasi-static linear poro-elasticity theory. The physical bases of this theory are briefly restated and an abstract setting is proposed to perform the mathematical study of the stationary and un-stationary versions of the HM problem. For the stationary version, the well-posedness of the continuous and discrete problems are established and the a priori error analysis is performed. Then, we propose the a posteriori error analysis by using two different techniques suited to estimate the displacement error and the pressure error, respectively, both in the Hx1-norm. The classical properties of reliability and optimality are proved for the associated error estimators. Some numerical experiments using Code-Aster illustrate the theoretical results. For the un-stationary version, we first establish a stability result for the continuous problem. Then, we present an optimal a priori error analysis using elliptic projection techniques. Finally, the a posteriori error analysis is performed by using two different approaches: a direct approach and an elliptic reconstruction approach. The first is suited to estimate the pressure error in the Lt2(Hx1)-norm and the second is suited to estimate the displacement error in the Lt∞(Hx1)-norm and the pressure error in the Lt∞(Hx1)-norm. Numerical experiments using Code-Aster complete the theoretical results. (author)

  14. Hydrothermal alteration mapping using ASTER data in Baogutu porphyry deposit, China

    International Nuclear Information System (INIS)

    Remote sensing plays an important role in mineral exploration. One of its proven applications is extracting host-rock lithology and alteration zones that are related to porphyry copper deposits. An Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) was used to map the Baogutu porphyry deposit alteration area. A circular alteration mineral zoning pattern was clearly observed in the classification result of potassic, phyllic, argillic, propylitic zones. The potassic is characterized by biotite and anhydrite with an absorption feature centered at 1.94 and 2.1um. The phyllic zone is characterized by illite and sericite that indicates an intense Al-OH absorption feature centered at 2.20um. The narrower argillic zone including kaolinite and alunite displays a secondary Al-OH absorption feature at 2.17 um. The mineral assemblages of the outer propylitic zone are epidote, chlorite and calcite that exhibit absorption features at 2.335um.The performance of Principal Component Analysis(PCA), Minimum Noise Fraction (MNF), band ratio(BR) and Constrained Energy Minimization(CEM) has been evaluated. These techniques identified new prospects of porphyry copper mineralization in the study areas. These results indicate that ASTER is a powerful tool in the initial steps of mineral exploration

  15. Extracting lithologic information from ASTER multispectral thermal infrared data in the eastern Kunlun

    Science.gov (United States)

    Xu, Kai; Kong, Chunfang; Shuai, Yanmin; Cao, Chunxiang; Yan, Shouxun

    2007-11-01

    In this paper, mechanisms of mineral radiation transfer, atmospheric correction and surface temperature retrieve, method of minerals identification based on emissivity spectral features are studied. Mineral radiation transfer can model the mechanisms of spectral formation and variation, and is one of study methods of spectral mechanism. Along with the variation of mineral granularity, the shape and absorption depth of mineral emissivity spectral will all variate. However, the law of emissivity variation with emission angle of different minerals is identical. Along with the increasement of emission angle, emissivity decrease. The more emissivity is small, the more variation range and speed are large. The reflectance mixture of mineral is non-linear, and can be lineated using mineral radiative transfer model. After the mixture spectral is lineated, the precision of linear unmixing of spectral and mineral content extraction will be improved greatly. The atmospheric correction and surface temperature retrieve of thermal remote sensing data will affect extraction lithologic information greatly. In this paper, using the MODTRAN model to atmospheric correction, and using split-window algorithm for retrieving surface temperature from ASTER thermal infrared data. With the minerals emissivity spectral features and the index (QI, CI and SI), retrieving Si02 content of rock quantitatively using ASTER thermal infrared data. The method can be used to extract lithologic information.

  16. Temperature/emissivity separation of MTI data using the Terra/ASTER TES algorithm

    Science.gov (United States)

    Mushkin, Amit; Balick, Lee K.; Gillespie, Alan R.

    2002-08-01

    Surface temperatures and emissivities can be estimated using multispectral thermal infrared (TIR) data, from various instruments. In this paper the temperature-emissivity separation algorithm (TES) is modified to recover surface temperatures and emissivities using Multispectral Thermal Imager (MTI) data from two mid infrared (MIR) and three TIR bands. As TES was originally designed for use with the five TIR bands from the Advanced Spaceborne Thermal Emission and Reflection (ASTER) instrument, broadening its application to MIR wavelengths requires careful evaluation of possible atmospheric and reflected daytime solar illumination effects. Numerical simulations show that TES results for MTI data, assuming error-free atmospheric corrections, are statistically similar to TES results for ASTER data, with surface temperature recovery within +/- 1.5K and emissivity recovery within +/- 0.02. However, strong atmospheric absorption (as high as 61%), and expected daytime reflected solar illumination (as high as 50% of measured radiance) in the MIR bands suggest that TES results for MTI data are more sensitive to errors in atmospheric compensation. Furthermore, the relatively steep slope of Planck's radiation curve for typical terrestrial temperatures in the MIR wavelengths, suggests that inverting temperatures from measured MIR radiance using Planck's law will be more sensitive to error. Numerical simulations and preliminary image analysis suggest that the three TIR MTI bands are not sufficient to obtain the desired TES results. However, omitting one of the MIR bands and using a four-band configuration decreases sensitivity to atmospheric effects, while still maintaining acceptable theoretical TES performance.

  17. Verification of the ASTER/TIR atmospheric correction algorithm based on water surface emissivity retrieved

    Science.gov (United States)

    Tonooka, Hideyuki; Palluconi, Frank D.

    2002-02-01

    The standard atmospheric correction algorithm for five thermal infrared (TIR) bands of the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) is currently based on radiative transfer computations with global assimilation data on a pixel-by-pixel basis. In the present paper, we verify this algorithm using 100 ASTER scenes globally acquired during the early mission period. In this verification, the max-min difference (MMD) of the water surface emissivity retrieved from each scene is used as an atmospheric correction error index, since the water surface emissivity is well known; if the MMD retrieved is large, an atmospheric correction error also will be possibly large. As the results, the error of the MMD retrieved by the standard atmospheric correction algorithm and a typical temperature/emissivity separation algorithm is shown to be remarkably related with precipitable water vapor, latitude, elevation, and surface temperature. It is also mentioned that the expected error on the MMD retrieved is 0.05 for the precipitable water vapor of 3 cm.

  18. Estimating Evapotranspiration from an Improved Two-Source Energy Balance Model Using ASTER Satellite Imagery

    Directory of Open Access Journals (Sweden)

    Qifeng Zhuang

    2015-11-01

    Full Text Available Reliably estimating the turbulent fluxes of latent and sensible heat at the Earth’s surface by remote sensing is important for research on the terrestrial hydrological cycle. This paper presents a practical approach for mapping surface energy fluxes using Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER images from an improved two-source energy balance (TSEB model. The original TSEB approach may overestimate latent heat flux under vegetative stress conditions, as has also been reported in recent research. We replaced the Priestley-Taylor equation used in the original TSEB model with one that uses plant moisture and temperature constraints based on the PT-JPL model to obtain a more accurate canopy latent heat flux for model solving. The collected ASTER data and field observations employed in this study are over corn fields in arid regions of the Heihe Watershed Allied Telemetry Experimental Research (HiWATER area, China. The results were validated by measurements from eddy covariance (EC systems, and the surface energy flux estimates of the improved TSEB model are similar to the ground truth. A comparison of the results from the original and improved TSEB models indicates that the improved method more accurately estimates the sensible and latent heat fluxes, generating more precise daily evapotranspiration (ET estimate under vegetative stress conditions.

  19. The non-catalytic domains of Drosophila katanin regulate its abundance and microtubule-disassembly activity.

    Directory of Open Access Journals (Sweden)

    Kyle D Grode

    Full Text Available Microtubule severing is a biochemical reaction that generates an internal break in a microtubule and regulation of microtubule severing is critical for cellular processes such as ciliogenesis, morphogenesis, and meiosis and mitosis. Katanin is a conserved heterodimeric ATPase that severs and disassembles microtubules, but the molecular determinants for regulation of microtubule severing by katanin remain poorly defined. Here we show that the non-catalytic domains of Drosophila katanin regulate its abundance and activity in living cells. Our data indicate that the microtubule-interacting and trafficking (MIT domain and adjacent linker region of the Drosophila katanin catalytic subunit Kat60 cooperate to regulate microtubule severing in two distinct ways. First, the MIT domain and linker region of Kat60 decrease its abundance by enhancing its proteasome-dependent degradation. The Drosophila katanin regulatory subunit Kat80, which is required to stabilize Kat60 in cells, conversely reduces the proteasome-dependent degradation of Kat60. Second, the MIT domain and linker region of Kat60 augment its microtubule-disassembly activity by enhancing its association with microtubules. On the basis of our data, we propose that the non-catalytic domains of Drosophila katanin serve as the principal sites of integration of regulatory inputs, thereby controlling its ability to sever and disassemble microtubules.

  20. Disruption of microtubules uncouples budding and nuclear division in Toxoplasma gondii.

    Science.gov (United States)

    Morrissette, Naomi S; Sibley, L David

    2002-03-01

    The tachyzoite stage of the protozoan parasite Toxoplasma gondii has two populations of microtubules: spindle microtubules and subpellicular microtubules. To determine how these two microtubule populations are regulated, we investigated microtubule behavior during the cell cycle following treatment with microtubule-disrupting drugs. Previous work had established that the microtubule populations are individually nucleated by two distinct microtubule-organizing centers (MTOCs): the apical polar ring for the subpellicular microtubules and spindle pole plaques/centrioles for the spindle microtubules. When replicating tachyzoites were treated with 0.5 microM oryzalin or 1.0 mM colchicine they retained the capacity to form a spindle and undergo nuclear division. Although these parasites could complete budding, they lost the bulk of their subpellicular microtubules and the ability to reinvade host cells. Both nascent spindle and subpellicular microtubules were disrupted in 2.5 microM oryzalin or 5.0 mM colchicine. Under these conditions, parasites grew in size and replicated their genome but were incapable of nuclear division. After removal from 0.5 microM oryzalin, Toxoplasma tachyzoites were able to restore normal subpellicular microtubules and a fully invasive phenotype. When oryzalin was removed from Toxoplasma tachyzoites treated with 2.5 microM drug, the parasites attempted to bud as crescent-shaped tachyzoites. Because the polyploid nuclear mass could not be correctly segregated, many daughter parasites lacked nuclei altogether although budding and scission from the maternal mass was able to be completed. Multiple MTOCs permit Toxoplasma tachyzoites to control nuclear division independently from cell polarity and cytokinesis. This unusual situation grants greater cell cycle flexibility to these parasites but abolishes the checks for coregulation of nuclear division and cytokinesis found in other eukaryotes. PMID:11870220

  1. The Feasibility of Coherent Energy Transfer in Microtubules

    CERN Document Server

    Craddock, Travis John Adrian; Mane, Jonathan; Hameroff, Stuart; Tuszynski, Jack A

    2014-01-01

    It was once purported that biological systems were far too warm and wet to support quantum phenomena mainly due to thermal effects disrupting quantum coherence. However recent experimental results and theoretical analyses have shown that thermal energy may assist, rather than disrupt, quantum coherence, especially in the dry hydrophobic interiors of biomolecules. Specifically, evidence has been accumulating for the necessary involvement of quantum coherence and entanglement between uniquely arranged chromophores in light harvesting photosynthetic complexes. Amazingly, the tubulin subunit proteins, which comprise microtubules, also possess a distinct architecture of chromophores, namely aromatic amino acids including tryptophan. The geometry and dipolar properties of these aromatics are similar to those found in photosynthetic units indicating that tubulin may support coherent energy transfer. Tubulin aggregated into microtubule geometric lattices may support such energy transfer, which could be of import for ...

  2. Electric oscillations generated by collective vibration modes of microtubule

    Czech Academy of Sciences Publication Activity Database

    Cifra, Michal; Havelka, D.; Kučera, O.

    Vol. 7376. Bellingham : SPIE, 2010 - (Kinnunen, M.; Myllyla, R.), 73760N1-73760N12 ISBN 978-0-8194-7652-4. ISSN 0277-786X. [Conference on Laser Applications in Life Sciences. Oulu (FI), 09.06.2010-11.06.2010] R&D Projects: GA ČR GPP102/10/P454 Institutional research plan: CEZ:AV0Z20670512 Keywords : bioelectric phenomena * cellular biophysics * microtubules Subject RIV: BO - Biophysics

  3. Golgi as an MTOC: making microtubules for its own good

    OpenAIRE

    Zhu, Xiaodong; Kaverina, Irina

    2013-01-01

    In cells, microtubules (MTs) are nucleated at MT-organizing centers (MTOCs). The centrosome-based MTOCs organize radial MT arrays which are often not optimal for polarized trafficking. A recently discovered subset of non-centrosomal MTs nucleated at the Golgi has proven to be indispensable for the Golgi organization, post-Golgi trafficking and cell polarity. Here, we summarize the history of this discovery, known molecular prerequisites of MT nucleation at the Golgi and unique functions of Go...

  4. Constructing 3D microtubule networks using holographic optical trapping

    OpenAIRE

    Bergman, J.; Osunbayo, O.; Vershinin, M.

    2015-01-01

    Developing abilities to assemble nanoscale structures is a major scientific and engineering challenge. We report a technique which allows precise positioning and manipulation of individual rigid filaments, enabling construction of custom-designed 3D filament networks. This approach uses holographic optical trapping (HOT) for nano-positioning and microtubules (MTs) as network building blocks. MTs are desirable engineering components due to their high aspect ratio, rigidity, and their ability t...

  5. GIT1 enhances neurite outgrowth by stimulating microtubule assembly

    Directory of Open Access Journals (Sweden)

    Yi-sheng Li

    2016-01-01

    Full Text Available GIT1, a G-protein-coupled receptor kinase interacting protein, has been reported to be involved in neurite outgrowth. However, the neurobiological functions of the protein remain unclear. In this study, we found that GIT1 was highly expressed in the nervous system, and its expression was maintained throughout all stages of neuritogenesis in the brain. In primary cultured mouse hippocampal neurons from GIT1 knockout mice, there was a significant reduction in total neurite length per neuron, as well as in the average length of axon-like structures, which could not be prevented by nerve growth factor treatment. Overexpression of GIT1 significantly promoted axon growth and fully rescued the axon outgrowth defect in the primary hippocampal neuron cultures from GIT1 knockout mice. The GIT1 N terminal region, including the ADP ribosylation factor-GTPase activating protein domain, the ankyrin domains and the Spa2 homology domain, were sufficient to enhance axonal extension. Importantly, GIT1 bound to many tubulin proteins and microtubule-associated proteins, and it accelerated microtubule assembly in vitro. Collectively, our findings suggest that GIT1 promotes neurite outgrowth, at least partially by stimulating microtubule assembly. This study provides new insight into the cellular and molecular pathogenesis of GIT1-associated neurological diseases.

  6. The Microtubule Minus-End-Binding Protein Patronin/PTRN-1 Is Required for Axon Regeneration in C. elegans

    Directory of Open Access Journals (Sweden)

    Marian Chuang

    2014-11-01

    Full Text Available Precise regulation of microtubule (MT dynamics is increasingly recognized as a critical determinant of axon regeneration. In contrast to developing neurons, mature axons exhibit noncentrosomal microtubule nucleation. The factors regulating noncentrosomal MT architecture in axon regeneration remain poorly understood. We report that PTRN-1, the C. elegans member of the Patronin/Nezha/calmodulin- and spectrin-associated protein (CAMSAP family of microtubule minus-end-binding proteins, is critical for efficient axon regeneration in vivo. ptrn-1-null mutants display generally normal developmental axon outgrowth but significantly impaired regenerative regrowth after laser axotomy. Unexpectedly, mature axons in ptrn-1 mutants display elevated numbers of dynamic axonal MTs before and after injury, suggesting that PTRN-1 inhibits MT dynamics. The CKK domain of PTRN-1 is necessary and sufficient for its functions in axon regeneration and MT dynamics and appears to stabilize MTs independent of minus-end localization. Whereas in developing neurons, PTRN-1 inhibits activity of the DLK-1 mitogen-activated protein kinase (MAPK cascade, we find that, in regeneration, PTRN-1 and DLK-1 function together to promote axonal regrowth.

  7. Temperature-emissivity separation with ASTER and LANDSAT 7 imagery validation on the fringe of the Okavango Delta, Botswana

    Science.gov (United States)

    Gieske, Ambro S.; Wubett, Michael T.; Timmermans, Wim J.; Parodi, Gabriel N.; Wolski, Piotr; Arneth, Almut

    2004-02-01

    Land surface temperatures are important in global change studies, in estimating radiation budget, heat balance studies and as control for climate models. A new algorithm for estimating land surface temperature and emissivity spectra for multi spectral thermal infrared ranging from 8 to 12mm images has been developed recently (Schmugge et al., 2002) for use with data from the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) on the TERRA platform. Similar methods are also used with the MODIS instrument. In this study, the method developed by Ogawa et al. (2002) was adopted to estimate the broadband emissivity from the narrow band emissivities of the five TIR channels of ASTER instrument in an area on the southern fringe of the Okavango Delta (Botswana). MODTRAN 4 was used to determine the necessary atmospheric corrections while software was developed to facilitate MODTRAN pre- and post-processing. The results were compared with field data, with a LANDSAT 7 image of the same day, and finally also with reported ASTER surface temperature and emissivities for the same image (high level ASTER product). Results indicate that the surface temperature depends rather sensitively on atmospheric transmissivity. No relation was found between broad-band emissivity and NDVI, contrary, for example, to earlier findings in Botswana by Owe and Van de Griend (1993). Using the TES method it becomes possible to obtain more reliable solutions to the energy balance and evapotranspiration problem, especially in semi-arid areas.

  8. The distribution of microtubules in differentiating cells of Micrasterias denticulata bréb.

    Science.gov (United States)

    Kiermayer, O

    1968-09-01

    As an extension of earlier cytophysiological and morphological studies on differentiating cells of Micrasterias denticulata, a fine structural investigation of glutaraldehyde-osmium tetroxide fixed material has been made. Special emphasis has been placed on the distribution of cytoplasmic microtubules and on their possible role in the processes of growth and differentiation. Four distinct systems of microtubules were found: (a) a band in the cortical protoplasm of the isthmus region which surrounds the nucleus; (b) several bands in the cortical protoplasm of the old half cells, with rod-like cross bridges between individual microtubules and between the microtubules and the plasmalemma; (c) clusters of microtubules near the posttelophase nucleus, some separated by "intertubular structures" possibly fibrils; and (d) microtubules in the internal and cortical protoplasm of differentiating half cells. PMID:24519210

  9. Regulation of developmental and environmental signaling by interaction between microtubules and membranes in plant cells.

    Science.gov (United States)

    Zhang, Qun; Zhang, Wenhua

    2016-02-01

    Cell division and expansion require the ordered arrangement of microtubules, which are subject to spatial and temporal modifications by developmental and environmental factors. Understanding how signals translate to changes in cortical microtubule organization is of fundamental importance. A defining feature of the cortical microtubule array is its association with the plasma membrane; modules of the plasma membrane are thought to play important roles in the mediation of microtubule organization. In this review, we highlight advances in research on the regulation of cortical microtubule organization by membrane-associated and membrane-tethered proteins and lipids in response to phytohormones and stress. The transmembrane kinase receptor Rho-like guanosine triphosphatase, phospholipase D, phosphatidic acid, and phosphoinositides are discussed with a focus on their roles in microtubule organization. PMID:26687389

  10. Mitosis and microtubule organizational changes in rice root-tip cells

    Institute of Scientific and Technical Information of China (English)

    XUSHIXIONG(SYZEE); CHUNGUILI; CHENGZHU

    1993-01-01

    The pattern of change of the microtubule cytoskeleton of the root-tip cells of rice during mitosis was studied using immunofluorescence technic and confocal laser scanning microscopy. All the major stages of ceil division including preprophase, prophase, metaphase, anaphase and telophase were observed. The most significant finding was that in the preprophase cells microtubules radiating from the nuclear surface to the cortex were frequently seen. During development these microtubules became closely associated with the preprophase band and prophase spindie indicating that the microtubules radiating from the nuclear surface, the preprophase band and the prophazc spindle were structurally and functionally closely related to each other. Granule-like anchorage sites for the radiating microtubules at the muclear surface were often seen and the possibility that these gramle-like anchorage sites might represent the microtubule organizing centres was discussed.

  11. Kinesin-1 translocation: Surprising differences between bovine brain and MCF7-derived microtubules.

    Science.gov (United States)

    Feizabadi, Mitra Shojania; Jun, Yonggun

    2014-10-30

    While there have been many single-molecule studies of kinesin-1, most have been done along microtubules purified from bovine or porcine brain, and relatively little is known about how variations in tubulin might alter motor function. Of particular interest is transport along microtubules polymerized from tubulin purified from MCF7 breast cancer cells, both because these cells are a heavily studied model system to help understand breast cancer, and also because the microtubules are already established to have interesting polymerization/stability differences from bovine tubulin, suggesting that perhaps transport along them is also different. Thus, we carried out paired experiments to allow direct comparison of in vitro kinesin-1 translocation along microtubules polymerized from either human breast cancer cells (MCF7) or microtubules from bovine brain. We found surprising differences: on MCF7 microtubules, kinesin-1's processivity is significantly reduced, although its velocity is only slightly altered. PMID:25450690

  12. Kinesin-1 Translocation along Human Breast Cancer Cell Microtubules in Vitro

    Science.gov (United States)

    Shojania Feizabadi, Mitra; Jun, Yonggun

    2015-03-01

    A principle approach to better understand intra-cellular microtubule based transport is to study such it in vitro. Such in vitro examinations have predominantly used microtubules polymerized from bovine brain tubulin, but motor function can also in principle be affected by the specific tubulin isotypes present in different cells. The human breast cancer cells carry different beta tubulin isotype distribution. However, it is entirely unknown whether transport along the microtubules is different in these cells. In this work we have characterized, for the first time, the translocation specifications of kinesin-1 along human breast cancer cell microtubules polymerized in vitro. We found that as compared with the translocation along bovine brain microtubules, kinesin-1 shows a fifty percent shorter processive run length and slightly slower velocity under similar experimental conditions. These first time results support the regulatory role of tubulin isotypes in regards to motor protein translocations, and quantify the translocation specifications of kinesin-1 along microtubules of human breast cancer cells.

  13. Mass Balance of Glaciers In Southern Chile, Based On Dems From Aster and Aerial Photographs

    Science.gov (United States)

    Rivera, A.; Casassa, G.; Bown, F.; Fernandez, A.

    The glaciers located in the Chilean southern Andes region (41-51S) have been re- treating and shrinking during most of the last century, in response to a climate warm- ing trend recognised in many climatic stations of the country. During recent years, several calving and small mountain glaciers have been analysed, in an attempt to cor- relate the short historical glacier variation (no longer than 150 years) with long term dendrochronological series (from 300 to 1000 years). The aim of this analysis is to un- derstand climate change during the last millennia, as well as the mechanisms of glacier response to such climatic changes. In this context, mass balance studies are one of the most important approaches to determine the specific relationship of glaciers to annual and decadal climatic changes. In Chile, only one glacier (glaciar Echaurren, 33S) has been systematically measured since 1975, generating the longest mass balance series of the country. To account for the mass balance of glaciers in the southern region of Chile, a geodetic method is presented, based upon the comparison of digital elevation models (DEM) obtained from aerial photographs and ASTER imagery from different dates. This method have been applied to glaciar Chico located at 49S in the Southern Patagonia Icefield, where we have generated DEMs from aerial photographs of 1975 and 1995, as well as one DEM from an ASTER image of October 2001. The DEMs are geo-referenced to a network of GPS points, measured in several field campaigns carried out during recent years at rock outcrops and in the accumulation area of the glacier. The last campaign was done during September and October 2001, allowing a high accuracy ground control validation for DEM derived from the contemporary ASTER image. The mass balance analysis is complemented with frontal variations derived from Landsat TM imagery, as well as field data and aerial photographs. One preliminary result of this study shows a consistent ice thinning, at

  14. Estimating surface fluxes over middle and upper streams of the Heihe River Basin with ASTER imagery

    Directory of Open Access Journals (Sweden)

    W. Ma

    2011-05-01

    Full Text Available Land surface heat fluxes are essential measures of the strengths of land-atmosphere interactions involving energy, heat and water. Correct parameterization of these fluxes in climate models is critical. Despite their importance, state-of-the-art observation techniques cannot provide representative areal averages of these fluxes comparable to the model grid. Alternative methods of estimation are thus required. These alternative approaches use (satellite observables of the land surface conditions. In this study, the Surface Energy Balance System (SEBS algorithm was evaluated in a cold and arid environment, using land surface parameters derived from Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER data. Field observations and estimates from SEBS were compared in terms of net radiation flux (Rn, soil heat flux (G0, sensible heat flux (H and latent heat flux (λE over a heterogeneous land surface. As a case study, this methodology was applied to the experimental area of the Watershed Allied Telemetry Experimental Research (WATER project, located on the mid-to-upstream sections of the Heihe River in northwest China. ASTER data acquired between 3 May and 4 June 2008, under clear-sky conditions were used to determine the surface fluxes. Ground-based measurements of land surface heat fluxes were compared with values derived from the ASTER data. The results show that the derived surface variables and the land surface heat fluxes furnished by SEBS in different months over the study area are in good agreement with the observed land surface status under the limited cases (some cases looks poor results. So SEBS can be used to estimate turbulent heat fluxes with acceptable accuracy in areas where there is partial vegetation cover in exceptive conditions. It is very important to perform calculations using ground-based observational data for parameterization in SEBS in the future

  15. Decadal region-wide and glacier-wide mass balances derived from multi-temporal ASTER satellite digital elevation models. Validation over the Mont-Blanc area

    Science.gov (United States)

    Berthier, Etienne; Cabot, Vincent; Vincent, Christian; Six, Delphine

    2016-06-01

    Since 2000, a vast archive of stereo-images has been built by the Advanced Spaceborne Thermal Emission and Reflection (ASTER) satellite. Several studies already extracted glacier mass balances from multi-temporal ASTER digital elevation models (DEMs) but they lacked accurate independent data for validation. Here, we apply a linear regression to a time series of 3D-coregistered ASTER DEMs to estimate the rate of surface elevation changes (dh/dtASTER) and geodetic mass balances of Mont-Blanc glaciers (155 km²) between 2000 and 2014. Validation using field and spaceborne geodetic measurements reveals large errors at the individual pixel level (> 1 m a-1) and an accuracy of 0.2-0.3 m a-1 for dh/dtASTER averaged over areas larger than 1 km². For all Mont-Blanc glaciers, the ASTER region-wide mass balance (-1.05±0.37 m water equivalent (w.e.) a-1) agrees remarkably with the one measured using Spot5 and Pléiades DEMs (-1.06±0.23 m w.e. a-1) over their common 2003-2012 period. This multi-temporal ASTER DEM strategy leads to smaller errors than the simple differencing of two ASTER DEMs. By extrapolating dh/dtASTER to mid-February 2000, we infer a mean penetration depth of about 9±3 m for the C-band Shuttle Radar Topographic Mission (SRTM) radar signal, with a strong altitudinal dependency (range 0-12 m). This methodology thus reveals the regional pattern of glacier surface elevation changes and improves our knowledge of the penetration of the radar signal into snow and ice.

  16. Modulating microtubule stability enhances the cytotoxic response of cancer cells to paclitaxel

    OpenAIRE

    Ahmed, Ahmed Ashour; Wang, Xiaoyan; Lu, Zhen; Goldsmith, Juliet,; Le, Xiao-Feng; Grandjean, Geoffrey; Bartholomeusz, Geoffrey; Broom, Bradley; Bast, Robert C.

    2011-01-01

    The extracellular matrix protein TGFBI enhances the cytotoxic response of cancer cells to paclitaxel by affecting integrin signals that stabilize microtubules. Extending the implications of this knowledge, we tested the more general hypothesis that cancer cell signals which increase microtubule stability before exposure to paclitaxel may increase its ability to stablize microtubules and thereby enhance its cytotoxicity. Toward this end, we performed an siRNA screen to evaluate how genetic dep...

  17. Tracking of plus-ends reveals microtubule functional diversity in different cell types

    Science.gov (United States)

    Shaebani, M. Reza; Pasula, Aravind; Ott, Albrecht; Santen, Ludger

    2016-07-01

    Many cellular processes are tightly connected to the dynamics of microtubules (MTs). While in neuronal axons MTs mainly regulate intracellular trafficking, they participate in cytoskeleton reorganization in many other eukaryotic cells, enabling the cell to efficiently adapt to changes in the environment. We show that the functional differences of MTs in different cell types and regions is reflected in the dynamic properties of MT tips. Using plus-end tracking proteins EB1 to monitor growing MT plus-ends, we show that MT dynamics and life cycle in axons of human neurons significantly differ from that of fibroblast cells. The density of plus-ends, as well as the rescue and catastrophe frequencies increase while the growth rate decreases toward the fibroblast cell margin. This results in a rather stable filamentous network structure and maintains the connection between nucleus and membrane. In contrast, plus-ends are uniformly distributed along the axons and exhibit diverse polymerization run times and spatially homogeneous rescue and catastrophe frequencies, leading to MT segments of various lengths. The probability distributions of the excursion length of polymerization and the MT length both follow nearly exponential tails, in agreement with the analytical predictions of a two-state model of MT dynamics.

  18. Tracking of plus-ends reveals microtubule functional diversity in different cell types.

    Science.gov (United States)

    Shaebani, M Reza; Pasula, Aravind; Ott, Albrecht; Santen, Ludger

    2016-01-01

    Many cellular processes are tightly connected to the dynamics of microtubules (MTs). While in neuronal axons MTs mainly regulate intracellular trafficking, they participate in cytoskeleton reorganization in many other eukaryotic cells, enabling the cell to efficiently adapt to changes in the environment. We show that the functional differences of MTs in different cell types and regions is reflected in the dynamic properties of MT tips. Using plus-end tracking proteins EB1 to monitor growing MT plus-ends, we show that MT dynamics and life cycle in axons of human neurons significantly differ from that of fibroblast cells. The density of plus-ends, as well as the rescue and catastrophe frequencies increase while the growth rate decreases toward the fibroblast cell margin. This results in a rather stable filamentous network structure and maintains the connection between nucleus and membrane. In contrast, plus-ends are uniformly distributed along the axons and exhibit diverse polymerization run times and spatially homogeneous rescue and catastrophe frequencies, leading to MT segments of various lengths. The probability distributions of the excursion length of polymerization and the MT length both follow nearly exponential tails, in agreement with the analytical predictions of a two-state model of MT dynamics. PMID:27461361

  19. ASTER and USGS EROS emergency imaging for hurricane disasters: Chapter 4D in Science and the storms-the USGS response to the hurricanes of 2005

    Science.gov (United States)

    Duda, Kenneth A.; Abrams, Michael

    2007-01-01

    Satellite images have been extremely useful in a variety of emergency response activities, including hurricane disasters. This article discusses the collaborative efforts of the U.S. Geological Survey (USGS), the Joint United States-Japan Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) Science Team, and the National Aeronautics and Space Administration (NASA) in responding to crisis situations by tasking the ASTER instrument and rapidly providing information to initial responders. Insight is provided on the characteristics of the ASTER systems, and specific details are presented regarding Hurricane Katrina support.

  20. Measurement of Breaking Force of Fluorescence Labelled Microtubules with Optical Tweezers

    Institute of Scientific and Technical Information of China (English)

    LIU Chun-Xiang; GUO Hong-Lian; XU Chun-Hua; YUAN Ming; LI Znao-Lin; CHENG Bing-Ying; ZHANG Dao-Zhong

    2005-01-01

    @@ Under illumination of excitation light, the force that can make fluorescent dye-labelled microtubules break up is measured by using dual-beam optical tweezers. It is found that this force is about several piconewtons, which is two orders of magnitude smaller than that without fluorescence label. Microtubules can be elongated about 20% and the increase of the tensile force is nonlinear with the microtubule elongation. Some qualitative explanations are given for the mechanisms about the breakup and elongation of microtubules exposed to excitation light.

  1. Astral microtubule pivoting promotes their search for cortical anchor sites during mitosis in budding yeast.

    Directory of Open Access Journals (Sweden)

    Stephan Baumgärtner

    Full Text Available Positioning of the mitotic spindle is crucial for proper cell division. In the budding yeast Saccharomyces cerevisiae, two mechanisms contribute to spindle positioning. In the Kar9 pathway, astral microtubules emanating from the daughter-bound spindle pole body interact via the linker protein Kar9 with the myosin Myo2, which moves the microtubule along the actin cables towards the neck. In the dynein pathway, astral microtubules off-load dynein onto the cortical anchor protein Num1, which is followed by dynein pulling on the spindle. Yet, the mechanism by which microtubules target cortical anchor sites is unknown. Here we quantify the pivoting motion of astral microtubules around the spindle pole bodies, which occurs during spindle translocation towards the neck and through the neck. We show that this pivoting is largely driven by the Kar9 pathway. The microtubules emanating from the daughter-bound spindle pole body pivot faster than those at the mother-bound spindle pole body. The Kar9 pathway reduces the time needed for an astral microtubule inside the daughter cell to start pulling on the spindle. Thus, we propose a new role for microtubule pivoting: By pivoting around the spindle pole body, microtubules explore the space laterally, which helps them search for cortical anchor sites in the context of spindle positioning in budding yeast.

  2. Combing and self-assembly phenomena in dry films of Taxol-stabilized microtubules

    Directory of Open Access Journals (Sweden)

    Rose Franck

    2007-01-01

    Full Text Available AbstractMicrotubules are filamentous proteins that act as a substrate for the translocation of motor proteins. As such, they may be envisioned as a scaffold for the self-assembly of functional materials and devices. Physisorption, self-assembly and combing are here investigated as a potential prelude to microtubule-templated self-assembly. Dense films of self-assembled microtubules were successfully produced, as well as patterns of both dendritic and non-dendritic bundles of microtubules. They are presented in the present paper and the mechanism of their formation is discussed.

  3. Phase-change kinetics for a microtubule with two free ends.

    OpenAIRE

    Hill, T L

    1985-01-01

    The two-phase macroscopic kinetic model of the end of a microtubule is extended to microtubules in solution, with two free ends. The theoretical treatment of this system is complicated by the possibility of microtubules shortening all the way to disappearance. Another possibility, if a microtubule is shortening from one end only (and has a GTP cap on the other end), is that completed shortening will leave a residual cap from which growth can then take place at both ends. Two approximations ar...

  4. Inhibition of kinesin-5 improves regeneration of injured axons by a novel microtubule-based mechanism

    Institute of Scientific and Technical Information of China (English)

    Peter W. Baas; Andrew J. Matamoros

    2015-01-01

    Microtubules have been identiifed as a powerful target for augmenting regeneration of injured adult axons in the central nervous system. Drugs that stabilize microtubules have shown some promise, but there are concerns that abnormally stabilizing microtubules may have only limited beneifts for regeneration, while at the same time may be detrimental to the normal work that microtubules perform for the axon. Kinesin-5 (also called kif11 or Eg5), a molecular motor protein best known for its crucial role in mitosis, acts as a brake on microtubule movements by other motor proteins in the axon. Drugs that inhibit kinesin-5, originally developed to treat cancer, result in greater mobility of microtubules in the axon and an overall shift in the forces on the microtubule array. As a result, the axon grows faster, retracts less, and more readily enters environments that are inhibitory to axonal regeneration. Thus, drugs that inhibit kinesin-5 offer a novel microtubule-based means to boost axonal regeneration without the concerns that ac-company abnormal stabilization of the microtubule array. Even so, inhibiting kinesin-5 is not without its own caveats, such as potential problems with navigation of the regenerating axon to its target, as well as morphological effects on dendrites that could affect learning and memory if the drugs reach the brain.

  5. Aster albescens Rust Caused by Aecidium asterum and Its Hyperparasitic Fungus Tuberculina persicina

    Institute of Scientific and Technical Information of China (English)

    HUANG Yun; YE Hua-zhi; CHEN Guang-yan; LIU Zi-ying; DONG Bao-chen

    2005-01-01

    Aster albescens is a medicinal plant. The rust caused by Aecidium asterum is a new record in China and an important disease of A. albescens in Feng Tong-zhai national reservation area. The percentages of diseased plant and the diseased leaf reach 100 and 28% respectively when the disease is serious. The disease results in leaf spot and leaf cast. Tuberculina persicina is a natural hyperparasite of A. asterum and is firstly reported in the world. The hyperparasite attacks aecium of A. asterum and hinderes the release of aeciospores. The symptom of the rust and the morphological characteristics of A.asterum is reported. The hyperparasitism of A. asterum and the morphological characteristics of the Tuberculina persicina are also reported.

  6. Seed quantity and quality in fruit heads of Aster lanceolatus Willd.: Implications for invasion success

    Directory of Open Access Journals (Sweden)

    Nešić Marija

    2013-01-01

    Full Text Available Aster lanceolatus Willd. is a herbaceous perennial that is considered invasive in many European countries. In Serbia, this plant inhabits wet habitats and forms widespread monospecific stands. The objective of this research is to determine whether generative reproduction has an important role in the expansion of this species to new areas. In 13 different localities, fruit heads were collected from lateral and terminal parts of infructescence. Seed quantity and germination parameters were determined for seeds in the fruit heads. The results showed that the position of the fruit heads did not have a major impact on germination parameters. However, germination parameters differed among the localities. The findings of this study suggest that A. lanceolatus produces a great amount of viable seeds that germinate in an amount sufficient to ensure a successful spread of this invasive species to new areas. [Projekat Ministarstva nauke Republike Srbije, br. 43007: Studying climate change and its influence on the environment: impacts, adaptation and mitigation

  7. Dependency of microtubule-associated proteins (MAPs) for tubulin stability and assembly; use of estramustine phosphate in the study of microtubules.

    Science.gov (United States)

    Fridén, B; Wallin, M

    1991-07-10

    Microtubule-associated proteins (MAPs) were separated from tubulin with several different methods. The ability of the isolated MAPs to reinduce assembly of phosphocellulose purified tubulin differed markedly between the different methods. MAPs isolated by addition of 0.35 M NaCl to taxol-stabilized microtubules stimulated tubulin assembly most effectively, while addition of 0.6 M NaCl produced MAPs with a substantially lower ability to stimulate tubulin assembly. The second best preparation was achieved with phosphocellulose chromatographic separation of MAPs with 0.6 M NaCl elution. The addition of estramustine phosphate to microtubules reconstituted of MAPs prepared by 0.35 M NaCl or phosphocellulose chromatography, induced less disassembly than for microtubules assembled from unseparated proteins, and was almost without effect on microtubules reconstituted from MAPs prepared by taxol and 0.6 M NaCl. Estramustine phosphate binds to the tubulin binding part of the MAPs, and the results do therefore indicate that the MAPs are altered by the separation methods. Since the MAPs are regarded as highly stable molecules, one probable alteration could be aggregation of the MAPs, as also indicated by the results. The purified tubulin itself seemed not to be affected by the phosphocellulose purification, since the microtubule proteins were unchanged by the low buffer strenght used during the cromatography. However, the assembly competence after a prolonged incubation of the microtubule proteins at 4 degrees C was dependent on intact bindings between the tubulin and MAPs. PMID:1681420

  8. VALIDATION OF THE ASTER GLOBAL DIGITAL ELEVATION MODEL VERSION 2 OVER THE CONTERMINOUS UNITED STATES

    Directory of Open Access Journals (Sweden)

    D. Gesch

    2012-07-01

    Full Text Available The ASTER Global Digital Elevation Model Version 2 (GDEM v2 was evaluated over the conterminous United States in a manner similar to the validation conducted for the original GDEM Version 1 (v1 in 2009. The absolute vertical accuracy of GDEM v2 was calculated by comparison with more than 18,000 independent reference geodetic ground control points from the National Geodetic Survey. The root mean square error (RMSE measured for GDEM v2 is 8.68 meters. This compares with the RMSE of 9.34 meters for GDEM v1. Another important descriptor of vertical accuracy is the mean error, or bias, which indicates if a DEM has an overall vertical offset from true ground level. The GDEM v2 mean error of –0.20 meters is a significant improvement over the GDEM v1 mean error of –3.69 meters. The absolute vertical accuracy assessment results, both mean error and RMSE, were segmented by land cover to examine the effects of cover types on measured errors. The GDEM v2 mean errors by land cover class verify that the presence of aboveground features (tree canopies and built structures cause a positive elevation bias, as would be expected for an imaging system like ASTER. In open ground classes (little or no vegetation with significant aboveground height, GDEM v2 exhibits a negative bias on the order of 1 meter. GDEM v2 was also evaluated by differencing with the Shuttle Radar Topography Mission (SRTM dataset. In many forested areas, GDEM v2 has elevations that are higher in the canopy than SRTM.

  9. Aster spathulifolius Maxim extract reduces body weight and fat mass in obese humans.

    Science.gov (United States)

    Cho, In-Jin; Choung, Se Young; Hwang, You-Cheol; Ahn, Kyu Jeung; Chung, Ho Yeon; Jeong, In-Kyung

    2016-07-01

    Aster spathulifolius Maxim (AS), a perennial herb of the genus Aster within the family Asteraceae, induced weight loss in a rat model of diet-induced obesity. We hypothesized that AS could also reduce body weight in obese humans. Therefore, we performed a randomized, double-blind, placebo-controlled clinical trial in Korea to evaluate the effect of AS extract (ASE) on body weight and fat mass and its safety in obese humans. Forty-four obese participants (body mass index [BMI], 25-30 kg/m(2)) aged ≥20 years were randomly assigned to the placebo or ASE group (700 mg/d of ASE) and were instructed to take a once-daily pill for 12 weeks. Weight, BMI, waist circumference, fat mass (measured using bioimpedance, dual-energy X-ray absorptiometry, and computed tomography), and laboratory tests were assessed at baseline and at 12 weeks. Body weight significantly decreased after 12 weeks of treatment in the ASE group (placebo vs ASE: -0.08 ± 2.11 kg vs -3.30 ± 3.15 kg, P bioimpedance method: -0.51 ± 1.89 kg vs -2.38 ± 2.30 kg, P < .05; dual-energy X-ray absorptiometry: 0.38 ± 1.59 kg vs -2.26 ± 2.37 kg, P < .05). Changes in lipid profiles, fasting plasma glucose, and hemoglobin A1c did not differ between the 2 groups. No drug-related adverse events were observed during the study. In conclusion, ASE significantly decreases body weight and fat mass in obese humans, suggesting that ASE may be a potential therapeutic candidate for reducing obesity. PMID:27333958

  10. Monitoring vegetation cover changes over a semi-arid rangeland with multispectral ASTER thermal infrared emissivities

    Science.gov (United States)

    French, A. N.; Schmugge, T.; Ritchie, J.; Hsu, A.; Jacob, F.; Ogawa, K.; Inamdar, A.

    2006-12-01

    Observations of land surface temperatures with thermal infrared are an important and crucial application of satellite remote sensing that the value of multispectral thermal infrared emissivities, a measurement component, may be overlooked. Spectral emissivities, retrievable from sensors such as ASTER and MODIS provide indispensable data for more accurate land surface temperature estimates and characterization of land surface cover. This study addresses the latter issue, whereby long-term changes in vegetation canopy densities can be detected in a way independent of more conventional vegetation indices such as NDVI. Thermal emissivities are dependent upon the surface geometry and are especially variable over sparse vegetation. When viewing such terrain, emissivities range in values from 0.8-0.9 represent dry soils and up to 0.98-0.99 represent vegetation. Using ASTER's 90 m multispectral thermal infrared capability, a sequence of 21 scenes were acquired for 2001-2003 over the New Mexico semi-arid rangeland, Jornada. These were calibrated, atmospherically corrected, georegistered, then converted to spectral and broadband emissivities. Analysis of the scenes reveals spatially coherent patches of grass and shrubland showing decreasing emissivities on the order of 1% per 3 years. The observed patterns could be due to long-term soil surface texture or moisture changes, but a more likely explanation is decreased vegetation density. A significant benefit of emissivity monitoring, particularly at 8-9.5 μm wavelengths, is its independence from vegetation greenness, which means thermal infrared assessments can be a useful canopy density estimator year-round. When used in conjunction with NDVI, thermal data can help discriminate soils from both green and senescent vegetation.

  11. Mapping of high pressure metamorphics in the As Sifah region, NE Oman using ASTER data

    Science.gov (United States)

    Rajendran, Sankaran; Nasir, Sobhi

    2015-02-01

    The high pressure metamorphic zone of As Sifah area in the Saih Hatat window, NE Oman plays a vital role to study global tectonic setting, metamorphism, transport direction and age of initial ophiolite emplacement. Scientists and researchers are keen in determining the protolith, structural evolution, and timing and metamorphic conditions of the Saih Hatat area. In this study, mapping of the metamorphic zone and discrimination of associated rock formations occurred in the As Sifah region is carried out using visible and near infrared-shortwave infrared (VNIR-SWIR) spectral bands of Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) and well known image processing methods such as image decorrelation, Principal Component Analysis (PCA) and Spectral Angel Mapper (SAM). The study delineated the region of metamorphic zone and discriminated the different metamorphic and carbonate rocks of the study area characterized by hydroxyl (OH) and carbonate bearing minerals. The assessment of accuracy for the occurrence and spatial distribution of major lithological units provided the overall accuracy of 96.06% with Kappa Coefficient = 0.95 in the matrix of Maximum Likelihood (ML) and compared with the Spectral Angle Mapper (SAM) and Spectral Information Divergence (SID) algorithms. The occurrence of such minerals are detected and confirmed by SAM supervised classification method. The study also describes the spectral character of metamorphic and carbonates minerals. The metamorphic zone and associated rock types interpreted over the images are verified in the field and checked for their occurrences and spatial distributions. The occurrence of CO3 bearing carbonate minerals and OH bearing metamorphic minerals are confirmed further under microscope, XRD analysis and PIMA spectral measurements in the laboratory studies. The study proved sensor capability of ASTER to discriminate metamorphic rocks from associated formations and detection of different mineral

  12. TRESK background K(+ channel is inhibited by PAR-1/MARK microtubule affinity-regulating kinases in Xenopus oocytes.

    Directory of Open Access Journals (Sweden)

    Gabriella Braun

    Full Text Available TRESK (TWIK-related spinal cord K(+ channel, KCNK18 is a major background K(+ channel of sensory neurons. Dominant-negative mutation of TRESK is linked to familial migraine. This important two-pore domain K(+ channel is uniquely activated by calcineurin. The calcium/calmodulin-dependent protein phosphatase directly binds to the channel and activates TRESK current several-fold in Xenopus oocytes and HEK293 cells. We have recently shown that the kinase, which is responsible for the basal inhibition of the K(+ current, is sensitive to the adaptor protein 14-3-3. Therefore we have examined the effect of the 14-3-3-inhibited PAR-1/MARK, microtubule-associated-protein/microtubule affinity-regulating kinase on TRESK in the Xenopus oocyte expression system. MARK1, MARK2 and MARK3 accelerated the return of TRESK current to the resting state after the calcium-dependent activation. Several other serine-threonine kinase types, generally involved in the modulation of other ion channels, failed to influence TRESK current recovery. MARK2 phosphorylated the primary determinant of regulation, the cluster of three adjacent serine residues (S274, 276 and 279 in the intracellular loop of mouse TRESK. In contrast, serine 264, the 14-3-3-binding site of TRESK, was not phosphorylated by the kinase. Thus MARK2 selectively inhibits TRESK activity via the S274/276/279 cluster, but does not affect the direct recruitment of 14-3-3 to the channel. TRESK is the first example of an ion channel phosphorylated by the dynamically membrane-localized MARK kinases, also known as general determinants of cellular polarity. These results raise the possibility that microtubule dynamics is coupled to the regulation of excitability in the neurons, which express TRESK background potassium channel.

  13. Supracellular microtubule alignments in cell layers associated with the secretion of certain fish scales.

    Science.gov (United States)

    Dane, P J; Tucker, J B

    1986-01-01

    Intercellularly aligned microtubule arrays are present in cell layers associated with the growth and secretion of scales in the zebra fish Brachydanio rerio and the neon tetra fish Hyphessobrycon innesi. The layers in question are: the osteoblast layer that covers the ossified outer surface of a scale, and the layer of fibroblasts that is situated immediately underneath the inner collagenous surface of a scale's fibrillary plate. In certain osteoblasts, the proximal portions of microtubules (with respect to centrosomes) run closely alongside the anterior margin of each cell where it flanks one of a scale's ridge-shaped circuli. These osteoblasts and microtubule portions are arranged in aligned rows that are parallel to circuli. However, the distal portions of the microtubules curve into an orientation that is approximately at right angles to circuli and they are aligned with each other and similar microtubule portions in adjacent osteoblasts. Such microtubule alignments only occur in osteoblasts that are associated with circuli. In Hyphessobrycon osteoblasts situated elsewhere on a scale's surface, microtubules radiate from cell centres but their distal portions curve into alignment with each other and are oriented alongside cell margins. The proximal portions of fibroblast microtubules radiate from centrally positioned centrosomes but the distal portions curve into alignment with each other and distal microtubule portions in neighbouring fibroblasts. The overall pattern of microtubule alignment is similar to that of collagen fibres, which these fibroblasts are secreting onto the fibrillary plate. The immunofluorescence protocol that was used to demonstrate the microtubule alignments described above did not reveal such alignments in the osteoblast and fibroblast layers associated with scales of the brown trout Salmo trutta fario. These findings are assessed in terms of intra-and inter-cellular control of microtubule alignment, and decentralized reorientation of

  14. The resolution-dependence of satellite-based cloud retrievals: First results from ASTER and MODIS observations

    Science.gov (United States)

    Werner, F.; Wind, G.; Zhang, Z.; Platnick, S. E.; Di Girolamo, L.

    2015-12-01

    The spatial resolution dependence of retrieved optical and microphysical cloud properties of marine shallow convective water clouds is presented using data from the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER), as well as the Moderate-resolution Imaging Spectroradiometer (MODIS) onboard the scientific research satellite Terra. Both instruments are characterized by vastly different spatial resolutions of 15m (ASTER) and 1000m (MODIS), respectively. Cloud optical thickness (τ) and effective droplet radius (reff) are derived by means of the Cross-platform HIgh resolution Multi-instrument AtmosphEric Retrieval Algorithms (CHIMAERA) system which yields MODIS-like cloud property retrievals via a shared-core architecture. The retrieval algorithm employs a standard bi-spectral retrieval scheme with two reflectances (ρ) in the visible to near-infrared spectral wavelength range (VNIR, 0.86μm) and shortwave infrared spectral wavelength range (SWIR, 2.1μm), respectively. For an exemplary granule the high-resolution ρ sampled by the ASTER instrument are aggregated from 15m to an increasingly coarse spatial resolution between (30-1000m). Subsequently, retrieved τ and reff from aggregated ρ are compared to the mean of the high-resolution cloud properties within the aggregated pixels. The differences in retrieved τ and reff are related to the sub-pixel covariance of ρ in the VNIR and SWIR band, as well as the inhomogeneity index (i.e., the ratio of standard deviation to mean value of ρ in the VNIR). This analysis highlights the impact of sub-pixel inhomogeneity and plane-parallel assumptions in the cloud property retrieval. CHIMAERA also allows for a comparison of ASTER and MODIS retrievals without introducing biases due to individual instrument algorithms. Retrieved τ and reff from the 1000m aggregated ρ sampled by ASTER are compared to the retrieved cloud properties provided by MODIS. The presented results highlight the different

  15. Hydrothermal Alteration Maps of the Central and Southern Basin and Range Province of the United States Compiled From Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) Data

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) data and Interactive Data Language (IDL) logical operator algorithms were used to map...

  16. Buckling of microtubules: An insight by molecular and continuum mechanics

    International Nuclear Information System (INIS)

    The molecular structural mechanics method has been extended to investigate the buckling of microtubules (MTs) with various configurations. The results indicate that for relative short MTs the shear deformation effect, rather than the nonlocal effect, is mainly responsible for the limitation of their widely used Euler beam description and the observed length-dependence of their bending stiffness. In addition, the configuration effect of MTs is also studied and considered as an explanation for the large scattering of the critical buckling force and bending stiffness observed in existing experiments. This configuration effect is also found to mainly originate from the geometry of the MTs and is mainly determined by the protofilament number.

  17. Golgi as an MTOC: making microtubules for its own good

    Science.gov (United States)

    Zhu, Xiaodong; Kaverina, Irina

    2013-01-01

    In cells, microtubules (MTs) are nucleated at MT-organizing centers (MTOCs). The centrosome-based MTOCs organize radial MT arrays which are often not optimal for polarized trafficking. A recently discovered subset of non-centrosomal MTs nucleated at the Golgi has proven to be indispensable for the Golgi organization, post-Golgi trafficking and cell polarity. Here, we summarize the history of this discovery, known molecular prerequisites of MT nucleation at the Golgi and unique functions of Golgi-derived MTs. PMID:23821162

  18. Interaction of microtubules with active principles of Xanthium strumarium.

    Science.gov (United States)

    Menon, G S; Kuchroo, K; Dasgupta, D

    2001-01-01

    Indigenous variety of Xanthium strumarium (X. strumarium) was screened for its antimitotic activity using the microtubule-tubulin system isolated from mammalian tissue. A preliminary phytochemical screening of the whole extracts of the plant was carried out followed by partial purification of the whole extract of X.strumarium. The separated fractions obtained were identified and used for in vitro polymerization studies. The whole as well as partially separated chemical constituents of X. strumarium showed effective inhibition of tubulin polymerization. The results thus suggest that X. strumarium may possess antimitotic components. PMID:12002689

  19. Fluid mechanics in dentinal microtubules provides mechanistic insights into the difference between hot and cold dental pain.

    Directory of Open Access Journals (Sweden)

    Min Lin

    Full Text Available Dental thermal pain is a significant health problem in daily life and dentistry. There is a long-standing question regarding the phenomenon that cold stimulation evokes sharper and more shooting pain sensations than hot stimulation. This phenomenon, however, outlives the well-known hydrodynamic theory used to explain dental thermal pain mechanism. Here, we present a mathematical model based on the hypothesis that hot or cold stimulation-induced different directions of dentinal fluid flow and the corresponding odontoblast movements in dentinal microtubules contribute to different dental pain responses. We coupled a computational fluid dynamics model, describing the fluid mechanics in dentinal microtubules, with a modified Hodgkin-Huxley model, describing the discharge behavior of intradental neuron. The simulated results agreed well with existing experimental measurements. We thence demonstrated theoretically that intradental mechano-sensitive nociceptors are not "equally sensitive" to inward (into the pulp and outward (away from the pulp fluid flows, providing mechanistic insights into the difference between hot and cold dental pain. The model developed here could enable better diagnosis in endodontics which requires an understanding of pulpal histology, neurology and physiology, as well as their dynamic response to the thermal stimulation used in dental practices.

  20. Fluid Mechanics in Dentinal Microtubules Provides Mechanistic Insights into the Difference between Hot and Cold Dental Pain

    Science.gov (United States)

    Lin, Min; Luo, Zheng Yuan; Bai, Bo Feng; Xu, Feng; Lu, Tian Jian

    2011-01-01

    Dental thermal pain is a significant health problem in daily life and dentistry. There is a long-standing question regarding the phenomenon that cold stimulation evokes sharper and more shooting pain sensations than hot stimulation. This phenomenon, however, outlives the well-known hydrodynamic theory used to explain dental thermal pain mechanism. Here, we present a mathematical model based on the hypothesis that hot or cold stimulation-induced different directions of dentinal fluid flow and the corresponding odontoblast movements in dentinal microtubules contribute to different dental pain responses. We coupled a computational fluid dynamics model, describing the fluid mechanics in dentinal microtubules, with a modified Hodgkin-Huxley model, describing the discharge behavior of intradental neuron. The simulated results agreed well with existing experimental measurements. We thence demonstrated theoretically that intradental mechano-sensitive nociceptors are not “equally sensitive” to inward (into the pulp) and outward (away from the pulp) fluid flows, providing mechanistic insights into the difference between hot and cold dental pain. The model developed here could enable better diagnosis in endodontics which requires an understanding of pulpal histology, neurology and physiology, as well as their dynamic response to the thermal stimulation used in dental practices. PMID:21448459

  1. Rapid Analysis Of Wildfire Impacts Using ASTER Data And Support Vector Machines: A Case Study From the Greek Fires Season Of Summer 2007

    Science.gov (United States)

    Petropoulos, G.; Knorr, W.; Scholze, M.; Boschetti, L.; Karantounias, G.

    2009-04-01

    The present study investigates the use of support vector machine (SVM) classification methods with multispectral data from the Advanced Spectral Emission and Reflection Radiometer (ASTER) for obtaining rapid and cost effective cartography of fuel types and burn scars in a Mediterranean setting. A further objective is to perform a detailed intercomparison of available burned area datasets for one of the most catastrophic forest fires that occurred near the Greek capital during the summer of 2007. Two ASTER multispectral images were acquired, one before and one closely after the fire episode. Fuel type and burned area maps were obtained by classifying each ASTER image into a number of discrete classes based on the Prometheus fuel model system. Training of the SVM classifier and accuracy assessment of derived fuel type maps was done using information from CORINE2000 land cover classification system. Accuracy assessment of the fuel type maps yielded an overall accuracy of 94.6% and a mean Kappa coefficient of 0.93, results comparable to or better than those reported by previous studies using parametric classification methods with ASTER data, or SVM classifiers with hyperspectral and LiDAR data. Fuel classes for the area under the envelope of the burned area extracted from the pre-fire ASTER image were in reasonable agreement with those reported by the local inventories by the Greek Forest Office and principally those from the European Forest Fire Information System (EFFIS). Reported total burned area by the independent sources on average deviated by 14% from the ASTER-derived estimate. Results confirmed the suitability of ASTER data in combination with SVM classifiers and the CORINE land information system as a means for rapid and low cost fuel type mapping and post-fire assessment. Keywords: burned area mapping, fuel types, support vector machines, ASTER, MODIS burned area product, EFFIS, Greek fires 2007

  2. Feeding cells induced by phytoparasitic nematodes require γ-tubulin ring complex for microtubule reorganization.

    Directory of Open Access Journals (Sweden)

    Mohamed Youssef Banora

    2011-12-01

    Full Text Available Reorganization of the microtubule network is important for the fast isodiametric expansion of giant-feeding cells induced by root-knot nematodes. The efficiency of microtubule reorganization depends on the nucleation of new microtubules, their elongation rate and activity of microtubule severing factors. New microtubules in plants are nucleated by cytoplasmic or microtubule-bound γ-tubulin ring complexes. Here we investigate the requirement of γ-tubulin complexes for giant feeding cells development using the interaction between Arabidopsis and Meloidogyne spp. as a model system. Immunocytochemical analyses demonstrate that γ-tubulin localizes to both cortical cytoplasm and mitotic microtubule arrays of the giant cells where it can associate with microtubules. The transcripts of two Arabidopsis γ-tubulin (TUBG1 and TUBG2 and two γ-tubulin complex proteins genes (GCP3 and GCP4 are upregulated in galls. Electron microscopy demonstrates association of GCP3 and γ-tubulin as part of a complex in the cytoplasm of giant cells. Knockout of either or both γ-tubulin genes results in the gene dose-dependent alteration of the morphology of feeding site and failure of nematode life cycle completion. We conclude that the γ-tubulin complex is essential for the control of microtubular network remodelling in the course of initiation and development of giant-feeding cells, and for the successful reproduction of nematodes in their plant hosts.

  3. CAMSAP3 orients the apical-to-basal polarity of microtubule arrays in epithelial cells.

    Science.gov (United States)

    Toya, Mika; Kobayashi, Saeko; Kawasaki, Miwa; Shioi, Go; Kaneko, Mari; Ishiuchi, Takashi; Misaki, Kazuyo; Meng, Wenxiang; Takeichi, Masatoshi

    2016-01-12

    Polarized epithelial cells exhibit a characteristic array of microtubules that are oriented along the apicobasal axis of the cells. The minus-ends of these microtubules face apically, and the plus-ends face toward the basal side. The mechanisms underlying this epithelial-specific microtubule assembly remain unresolved, however. Here, using mouse intestinal cells and human Caco-2 cells, we show that the microtubule minus-end binding protein CAMSAP3 (calmodulin-regulated-spectrin-associated protein 3) plays a pivotal role in orienting the apical-to-basal polarity of microtubules in epithelial cells. In these cells, CAMSAP3 accumulated at the apical cortices, and tethered the longitudinal microtubules to these sites. Camsap3 mutation or depletion resulted in a random orientation of these microtubules; concomitantly, the stereotypic positioning of the nucleus and Golgi apparatus was perturbed. In contrast, the integrity of the plasma membrane was hardly affected, although its structural stability was decreased. Further analysis revealed that the CC1 domain of CAMSAP3 is crucial for its apical localization, and that forced mislocalization of CAMSAP3 disturbs the epithelial architecture. These findings demonstrate that apically localized CAMSAP3 determines the proper orientation of microtubules, and in turn that of organelles, in mature mammalian epithelial cells. PMID:26715742

  4. XTACC3-XMAP215 association reveals an asymmetric interaction promoting microtubule elongation

    DEFF Research Database (Denmark)

    Mortuza, Gulnahar B.; Cavazza, Tommaso; Garcia-Mayoral, Maria Flor;

    2014-01-01

    chTOG is a conserved microtubule polymerase that catalyses the addition of tubulin dimers to promote microtubule growth. chTOG interacts with TACC3, a member of the transforming acidic coiled-coil (TACC) family. Here we analyse their association using the Xenopus homologues, XTACC3 (TACC3) and XM...

  5. Learning-induced and stathmin-dependent changes in microtubule stability are critical for memory and disrupted in ageing

    OpenAIRE

    Uchida, Shusaku; Martel, Guillaume; Pavlowsky, Alice; Takizawa, Shuichi; Hevi, Charles; Watanabe, Yoshifumi; Kandel, Eric R.; Alarcon, Juan Marcos; Shumyatsky, Gleb P.

    2014-01-01

    Changes in the stability of microtubules regulate many biological processes, but their role in memory remains unclear. Here we show that learning causes biphasic changes in the microtubule-associated network in the hippocampus. In the early phase, stathmin is dephosphorylated, enhancing its microtubule-destabilizing activity by promoting stathmin-tubulin binding, whereas in the late phase these processes are reversed leading to an increase in microtubule/KIF5-mediated localization of the GluA...

  6. ELMO recruits actin cross-linking family 7 (ACF7) at the cell membrane for microtubule capture and stabilization of cellular protrusions.

    Science.gov (United States)

    Margaron, Yoran; Fradet, Nadine; Côté, Jean-François

    2013-01-11

    ELMO and DOCK180 proteins form an evolutionarily conserved module controlling Rac GTPase signaling during cell migration, phagocytosis, and myoblast fusion. Here, we identified the microtubule and actin-binding spectraplakin ACF7 as a novel ELMO-interacting partner. A C-terminal polyproline segment in ELMO and the last spectrin repeat of ACF7 mediate a direct interaction between these proteins. Co-expression of ELMO1 with ACF7 promoted the formation of long membrane protrusions during integrin-mediated cell spreading. Quantification of membrane dynamics established that coupling of ELMO and ACF7 increases the persistence of the protruding activity. Mechanistically, we uncovered a role for ELMO in the recruitment of ACF7 to the membrane to promote microtubule capture and stability. Functionally, these effects of ELMO and ACF7 on cytoskeletal dynamics required the Rac GEF DOCK180. In conclusion, our findings support a role for ELMO in protrusion stability by acting at the interface between the actin cytoskeleton and the microtubule network. PMID:23184944

  7. Topographic profile of a target with use of laser pulses. A survey directed to the Brazilian deep space mission ASTER

    International Nuclear Information System (INIS)

    This work is directly related to the development of the laser altimeter for the ASTER mission, named ALR. The Brazilian deep space mission ASTER plans to send a small spacecraft to encounter and investigate the triple asteroid 2001-SN263. The launch is scheduled to occur in 2017 and the ALR is now under development in partnership with UNICAMP, UFABC and aerospace companies. In this work, the environment and the operation of the instrument were modeled and simulations were carried out in order to better understand and define the instrument parameters. The creation of the simulation software to control the operation of the instrument was the main purpose of this work, and the software so far created is the main result of it. The software was successfully tested with respect to some common expected situations

  8. Lithological mapping using multispectral ASTER and Landsat 8 data in the Bas Drâa inlier, Moroccan Anti Atlas

    Science.gov (United States)

    Adiri, Zakaria; El Harti, Abderrazak; Jellouli, Amine; Maacha, Lhou; Bachaoui, El Mostafa

    2015-10-01

    Lithological mapping is one of the fundamental steps in the various mineral prospecting studies, because it forms the basis of the interpretation and validation of retrieved results. Therefore, this study exploited the multispectral ASTER (Advanced Spaceborne Thermal Emission and Reflection Radiometer) and Landsat 8 data in order to map lithological units in the Bas Drâa inlier, at the Moroccan Anti atlas. This task was completed by using the principal component analysis (PCA), band ratios (BR) and support vector machine (SVM) classification. Overall accuracy and the kappa coefficient of SVM based on ground truth in addition to the results of PCA and BR show an excellent correlation with the existing geological maps and previous works on the study area. Consequently, the methodology proposed demonstrates a high potential of ASTER and Landsat 8 data in lithological units discrimination.

  9. Mapping Hydrothermal Alterations in the Muteh Gold Mining Area in Iran by using ASTER satellite Imagery data

    Science.gov (United States)

    Asadi Haroni, Hooshang; Hassan Tabatabaei, Seyed

    2016-04-01

    Muteh gold mining area is located in 160 km NW of Isfahan town. Gold mineralization is meso-thermal type and associated with silisic, seresitic and carbonate alterations as well as with hematite and goethite. Image processing and interpretation were applied on the ASTER satellite imagery data of about 400 km2 at the Muteh gold mining area to identify hydrothermal alterations and iron oxides associated with gold mineralization. After applying preprocessing methods such as radiometric and geometric corrections, image processing methods of Principal Components Analysis (PCA), Least Square Fit (Ls-Fit) and Spectral Angle Mapper (SAM) were applied on the ASTER data to identify hydrothermal alterations and iron oxides. In this research reference spectra of minerals such as chlorite, hematite, clay minerals and phengite identified from laboratory spectral analysis of collected samples were used to map the hydrothermal alterations. Finally, identified hydrothermal alteration and iron oxides were validated by visiting and sampling some of the mapped hydrothermal alterations.

  10. Specific polar subpopulations of astral microtubules control spindle orientation and symmetric neural stem cell division.

    Science.gov (United States)

    Mora-Bermúdez, Felipe; Matsuzaki, Fumio; Huttner, Wieland B

    2014-01-01

    Mitotic spindle orientation is crucial for symmetric vs asymmetric cell division and depends on astral microtubules. Here, we show that distinct subpopulations of astral microtubules exist, which have differential functions in regulating spindle orientation and division symmetry. Specifically, in polarized stem cells of developing mouse neocortex, astral microtubules reaching the apical and basal cell cortex, but not those reaching the central cell cortex, are more abundant in symmetrically than asymmetrically dividing cells and reduce spindle orientation variability. This promotes symmetric divisions by maintaining an apico-basal cleavage plane. The greater abundance of apical/basal astrals depends on a higher concentration, at the basal cell cortex, of LGN, a known spindle-cell cortex linker. Furthermore, newly developed specific microtubule perturbations that selectively decrease apical/basal astrals recapitulate the symmetric-to-asymmetric division switch and suffice to increase neurogenesis in vivo. Thus, our study identifies a novel link between cell polarity, astral microtubules, and spindle orientation in morphogenesis. PMID:24996848

  11. Microtubules restrict plastid sedimentation in protonemata of the moss Ceratodon

    Science.gov (United States)

    Schwuchow, J.; Sack, F. D.

    1994-01-01

    Apical cells of protonemata of the moss Ceratodon purpureus are unusual among plant cells with sedimentation in that only some amyloplasts sediment and these do not fall completely to the bottom of vertical cells. To determine whether the cytoskeleton restricts plastid sedimentation, the effects of amiprophos-methyl (APM) and cytochalasin D (CD) on plastid position were quantified. APM treatments of 30-60 min increased the plastid sedimentation that is normally seen along the length of untreated or control cells. Longer APM treatments often resulted in more dramatic plastid sedimentation, and in some cases almost all plastids sedimented to the lowermost point in the cell. In contrast, the microfilament inhibitor CD did not affect longitudinal plastid sedimentation compared to untreated cells, although it did disturb or eliminate plastid zonation in the tip. These data suggest that microtubules restrict the sedimentation of plastids along the length of the cell and that microtubules are load-bearing for all the plastids in the apical cell. This demonstrates the importance of the cytoskeleton in maintaining organelle position and cell organization against the force of gravity.

  12. Hepatocyte cotransport of taurocholate and bilirubin glucuronides: Role of microtubules

    International Nuclear Information System (INIS)

    Modulation of bile pigment excretion by bile salts has been attributed to modification of canalicular membrane transport or a physical interaction in bile. Based on the observation that a microtubule-dependent pathway is involved in the hepatocellular transport of bile salts, the authors investigated the possibility that bilirubin glucuronides are associated with bile salts during intracellular transport. Experiments were conducted in intact rats (basal) or after overnight biliary diversion and intravenous reinfusion of taurocholate (depleted/reinfused). All rats were pretreated with intravenous low-dose colchicine or its inactive isomer lumicolchicine. Biliary excretion of radiolabeled bilirubin glucuronides derived from tracer [14C]bilirubin-[3H]bilirubin monoglucuronide (coinjected iv) was unchanged in basal rats but was consistently delayed in depleted/reinfused rats. This was accompanied by a significant shift toward bilirubin diglucuronide formation from both substrates. In basal Gunn rats, with deficient bilirubin glucuronidation, biliary excretion of intravenous [14C]bilirubin monoglucuronide-[3H]bilirubin diglucuronide was unaffected by colchicine but was retarded in depleted/reinfused Gunn rats. Colchicine had no effect on the rate of bilirubin glucuronidation in vitro in rat liver microsomes. They conclude that a portion of the bilirubin glucuronides generated endogenously in hepatocytes or taken up directly from plasma may be cotransported with bile salts to the bile canalicular membrane via a microtubule-dependent mechanism

  13. Retrieval of a Temporal High-Resolution Leaf Area Index (LAI) by Combining MODIS LAI and ASTER Reflectance Data

    OpenAIRE

    Yonghua Qu; Wenchao Han; Mingguo Ma

    2014-01-01

    This paper aims to retrieve temporal high-resolution LAI derived by fusing MOD15 products (1 km resolution), field-measured LAI and ASTER reflectance (15-m resolution). Though the inversion of a physically based canopy reflectance model using high-resolution satellite data can produce high-resolution LAI products, the obstacle to producing temporal products is obvious due to the low temporal resolution of high resolution satellite data. A feasible method is to combine different source data, ...

  14. Using ASTER Imagery in Land Use/cover Classification of Eastern Mediterranean Landscapes According to CORINE Land Cover Project

    OpenAIRE

    Recep Gundogan; Abdullah E. Akay; Alaaddin Yüksel

    2008-01-01

    The satellite imagery has been effectively utilized for classifying land cover types and detecting land cover conditions. The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) sensor imagery has been widely used in classification process of land cover. However, atmospheric corrections have to be made by preprocessing satellite sensor imagery since the electromagnetic radiation signals received by the satellite sensors can be scattered and absorbed by the atmospheric gases...

  15. Surface Heat Balance Analysis of Tainan City on March 6, 2001 Using ASTER and Formosat-2 Data

    Science.gov (United States)

    Kato, Soushi; Yamaguchi, Yasushi; Liu, Cheng-Chien; Sun, Chen-Yi

    2008-01-01

    The urban heat island phenomenon occurs as a mixed result of anthropogenic heat discharge, decreased vegetation, and increased artificial impervious surfaces. To clarify the contribution of each factor to the urban heat island, it is necessary to evaluate the surface heat balance. Satellite remote sensing data of Tainan City, Taiwan, obtained from Terra ASTER and Formosat-2 were used to estimate surface heat balance in this study. ASTER data is suitable for analyzing heat balance because of the wide spectral range. We used Formosat-2 multispectral data to classify the land surface, which was used to interpolate some surface parameters for estimating heat fluxes. Because of the high spatial resolution of the Formosat-2 image, more roads, open spaces and small vegetation areas could be distinguished from buildings in urban areas; however, misclassifications of land cover in such areas using ASTER data would overestimate the sensible heat flux. On the other hand, the small vegetated areas detected from the Formosat-2 image slightly increased the estimation of latent heat flux. As a result, the storage heat flux derived from Formosat-2 is higher than that derived from ASTER data in most areas. From these results, we can conclude that the higher resolution land coverage map increases accuracy of the heat balance analysis. Storage heat flux occupies about 60 to 80% of the net radiation in most of the artificial surface areas in spite of their usages. Because of the homogeneity of the building roof materials, there is no contrast between the storage heat flux in business and residential areas. In sparsely vegetated urban areas, more heat is stored and latent heat is smaller than that in the forested suburbs. This result implies that density of vegetation has a significant influence in decreasing temperatures.

  16. Induction with 60Co gamma rays of modification variability and mutation of China aster (Callistephus chinensis Nees

    OpenAIRE

    A. Wosińska

    2013-01-01

    The effect of radiation on variability was investigated in plants of five varieties of China aster, grown from seeds pretreated with various doses of gamma rays (generation M1) and in the progeny of these plants (generation M2). Both in generation M1 and in M2 the frequency of occurrence of radiation induced changes varied. In the M1 generation, beside teratological changes found most frequently in early periods, the observed variability concerned mostly leaves, their colour and size and the ...

  17. Untersuchungen zum Entwicklungsrhythmus und zur Kultursteuerung belaubt überwinternder Stauden am Beispiel von Aster alpinus 'Happy End'

    OpenAIRE

    Jende, Andreas

    2000-01-01

    Am Beispiel von Aster alpinus 'Happy End' wird der Entwicklungsverlauf vom Zeitpunkt der Vermehrung bis zur Ausbildung von Infloreszenzen beschrieben, um daraus Empfehlungen für die Kultur als blühende Topfstaude abzuleiten. Dazu wurden über einen Zeitraum von drei Jahren Versuche mit unterschiedlich vermehrten Pflanzen durchgeführt. Verwendet wurden hierbei Pflanzen aus generativer und vegetativer Vermehrung (Stecklinge, in vitro). Untersucht wurde der Verlauf der vegetativen und generativen...

  18. An approach of surface coal fire detection from ASTER and Landsat-8 thermal data: Jharia coal field, India

    Science.gov (United States)

    Roy, Priyom; Guha, Arindam; Kumar, K. Vinod

    2015-07-01

    Radiant temperature images from thermal remote sensing sensors are used to delineate surface coal fires, by deriving a cut-off temperature to separate coal-fire from non-fire pixels. Temperature contrast of coal fire and background elements (rocks and vegetation etc.) controls this cut-off temperature. This contrast varies across the coal field, as it is influenced by variability of associated rock types, proportion of vegetation cover and intensity of coal fires etc. We have delineated coal fires from background, based on separation in data clusters in maximum v/s mean radiant temperature (13th band of ASTER and 10th band of Landsat-8) scatter-plot, derived using randomly distributed homogeneous pixel-blocks (9 × 9 pixels for ASTER and 27 × 27 pixels for Landsat-8), covering the entire coal bearing geological formation. It is seen that, for both the datasets, overall temperature variability of background and fires can be addressed using this regional cut-off. However, the summer time ASTER data could not delineate fire pixels for one specific mine (Bhulanbararee) as opposed to the winter time Landsat-8 data. The contrast of radiant temperature of fire and background terrain elements, specific to this mine, is different from the regional contrast of fire and background, during summer. This is due to the higher solar heating of background rocky outcrops, thus, reducing their temperature contrast with fire. The specific cut-off temperature determined for this mine, to extract this fire, differs from the regional cut-off. This is derived by reducing the pixel-block size of the temperature data. It is seen that, summer-time ASTER image is useful for fire detection but required additional processing to determine a local threshold, along with the regional threshold to capture all the fires. However, the winter Landsat-8 data was better for fire detection with a regional threshold.

  19. Google Earth's derived digital elevation model: A comparative assessment with Aster and SRTM data

    International Nuclear Information System (INIS)

    This paper presents a statistical analysis showing additional evidence that Digital Elevation Model (DEM) derived from Google Earth is commendable and has a good correlation with ASTER (Advanced Space-borne Thermal Emission and Reflection Radiometer) and SRTM (Shuttle Radar Topography Mission) elevation data. The accuracy of DEM elevation points from Google Earth was compared against that of DEMs from ASTER and SRTM for flat, hilly and mountainous sections of a pre-selected rural watershed. For each section, a total of 5,000 DEM elevation points were extracted as samples from each type of DEM data. The DEM data from Google Earth and SRTM for flat and hilly sections are strongly correlated with the R2 of 0.791 and 0.891 respectively. Even stronger correlation is shown for the mountainous section where the R2 values between Google Earth's DEM and ASTER's and between Google Earth's DEM and SRTM's DEMs are respectively 0.917 and 0.865. Further accuracy testing was carried out by utilising the DEM dataset to delineate Muar River's watershed boundary using ArcSWAT2009, a hydrological modelling software. The result shows that the percentage differences of the watershed size delineated from Google Earth's DEM compared to those derived from Department of Irrigation and Drainage's data (using 20m-contour topographic map), ASTER and SRTM data are 9.6%, 10.6%, and 7.6% respectively. It is therefore justified to conclude that the DEM derived from Google Earth is relatively as acceptable as DEMs from other sources

  20. Recent changes in glacier area in the Central Southern Alps of New Zealand : - Mapped from ASTER satellite imagery

    OpenAIRE

    2007-01-01

    Change in glacier extent is a good indication of climate change. Inventories for glaciated areas should therefore be made at certain intervals. For New Zealand a digitized glacial inventory including both the two main islands’ glaciers was made from aerial photographs recorded in 1978. This inventory needed an update. One Aster scene (60*60km) recorded 14. February 2002 covering the central Southern Alps of New Zealand is used for the updating. The area covered by the image contained, in ...

  1. Surface Heat Balance Analysis of Tainan City on March 6, 2001 Using ASTER and Formosat-2 Data

    Directory of Open Access Journals (Sweden)

    Chen-Yi Sun

    2008-09-01

    Full Text Available The urban heat island phenomenon occurs as a mixed result of anthropogenic heat discharge, decreased vegetation, and increased artificial impervious surfaces. To clarify the contribution of each factor to the urban heat island, it is necessary to evaluate the surface heat balance. Satellite remote sensing data of Tainan City, Taiwan, obtained from Terra ASTER and Formosat-2 were used to estimate surface heat balance in this study. ASTER data is suitable for analyzing heat balance because of the wide spectral range. We used Formosat-2 multispectral data to classify the land surface, which was used to interpolate some surface parameters for estimating heat fluxes. Because of the high spatial resolution of the Formosat-2 image, more roads, open spaces and small vegetation areas could be distinguished from buildings in urban areas; however, misclassifications of land cover in such areas using ASTER data would overestimate the sensible heat flux. On the other hand, the small vegetated areas detected from the Formosat-2 image slightly increased the estimation of latent heat flux. As a result, the storage heat flux derived from Formosat-2 is higher than that derived from ASTER data in most areas. From these results, we can conclude that the higher resolution land coverage map increases accuracy of the heat balance analysis. Storage heat flux occupies about 60 to 80% of the net radiation in most of the artificial surface areas in spite of their usages. Because of the homogeneity of the building roof materials, there is no contrast between the storage heat flux in business and residential areas. In sparsely vegetated urban areas, more heat is stored and latent heat is smaller than that in the forested suburbs. This result implies that density of vegetation has a significant influence in decreasing temperatures.

  2. Cytomagnetometric study of interactions between microfilaments and microtubules by measuring the energy imparted to magnetic particles within the cells

    Energy Technology Data Exchange (ETDEWEB)

    Nemoto, Iku [Tokyo Denki University School of Information Environment 2-1200, Muzai-Gakuendai, Inzai, Chiba 270-1382 (Japan)]. E-mail: nemoto@sie.dendai.ac.jp; Kawamura, Kazuhisa [Tokyo Denki University School of Science and Engineering Hatoyama, Saitama 350-0394 (Japan)

    2005-05-15

    Cytomagnetometric measurements of the energy imparted to intracellular organelles were made to study the relationship between microtubules and microfilaments. Depolymerization of microtubules by colchicine resulted in an increase in the energy suggesting that microtubules in control condition suppress the activity of microfilaments.

  3. Macro- and Microscopic Self-Similarity in Neuro- and Psycho-Dynamics

    OpenAIRE

    Ivancevic, Vladimir G.; Ivancevic, Tijana T.

    2008-01-01

    The unique Hamiltonian description of neuro- and psycho-dynamics at the macroscopic, classical, inter-neuronal level of brain's neural networks, and microscopic, quantum, intra-neuronal level of brain's microtubules, is presented in the form of open Liouville equations. This implies the arrow of time in both neuro- and psycho-dynamic processes and shows the existence of the formal neuro-biological space-time self-similarity. Keywords: Neuro- and psycho-dynamics, Brain microtubules, Hamiltonia...

  4. Generating daily high spatial land surface temperatures by combining ASTER and MODIS land surface temperature products for environmental process monitoring.

    Science.gov (United States)

    Wu, Mingquan; Li, Hua; Huang, Wenjiang; Niu, Zheng; Wang, Changyao

    2015-08-01

    There is a shortage of daily high spatial land surface temperature (LST) data for use in high spatial and temporal resolution environmental process monitoring. To address this shortage, this work used the Spatial and Temporal Adaptive Reflectance Fusion Model (STARFM), Enhanced Spatial and Temporal Adaptive Reflectance Fusion Model (ESTARFM), and the Spatial and Temporal Data Fusion Approach (STDFA) to estimate high spatial and temporal resolution LST by combining Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) LST and Moderate Resolution Imaging Spectroradiometer (MODIS) LST products. The actual ASTER LST products were used to evaluate the precision of the combined LST images using the correlation analysis method. This method was tested and validated in study areas located in Gansu Province, China. The results show that all the models can generate daily synthetic LST image with a high correlation coefficient (r) of 0.92 between the synthetic image and the actual ASTER LST observations. The ESTARFM has the best performance, followed by the STDFA and the STARFM. Those models had better performance in desert areas than in cropland. The STDFA had better noise immunity than the other two models. PMID:26165141

  5. Ecology and distribution of an invasive species Aster­lanceolatus willd. on wet habitats in Belgrade

    Directory of Open Access Journals (Sweden)

    Obratov-Petković Dragica

    2009-01-01

    Full Text Available The species Aster lanceolatus occupies a significant position in the world and European lists of invasive species. Its spreading potential is a hazardous factor to the biodiversity in many countries. There are no relevant data on the wider proportion of this species in the area of Belgrade. The sites of Aster lanceolatus are annual or pioneer communities along the water courses, abandoned and neglected areas, forest margins, moist meadows. The study areas are located near a choice of water courses in Belgrade. The aim of the study was to assess the species ecology and population density, synecological interrelationships among the coenobionts of the communities in which it occurs, and also to map its the habitats. The study of population density was performed on the supplemented and partially modified 'CPS SKEW' form, applied in West European countries, by the principle of squares. The species was determined by standard floristic method, and the species location by GPS system. It was concluded that Aster lanceolatus was dominant and wild at all study sites. The individuals and populations are especially numerous on the river islands Ada Ciganlija and Veliko Ratno Ostrvo, along the stream Kumodršaki Potok and the Danube left bank, where the number of individuals per squares is above 1300 and the degree of coverage is 100%. Its spreading potential is conditioned by the species biology, and the expansiveness by climate changes, anthropogenic impacts and the competitive interrelationships.

  6. Using ASTER Imagery in Land Use/cover Classification of Eastern Mediterranean Landscapes According to CORINE Land Cover Project

    Directory of Open Access Journals (Sweden)

    Recep Gundogan

    2008-02-01

    Full Text Available The satellite imagery has been effectively utilized for classifying land covertypes and detecting land cover conditions. The Advanced Spaceborne Thermal Emissionand Reflection Radiometer (ASTER sensor imagery has been widely used in classificationprocess of land cover. However, atmospheric corrections have to be made by preprocessingsatellite sensor imagery since the electromagnetic radiation signals received by the satellitesensors can be scattered and absorbed by the atmospheric gases and aerosols. In this study,an ASTER sensor imagery, which was converted into top-of-atmosphere reflectance(TOA, was used to classify the land use/cover types, according to COoRdination ofINformation on the Environment (CORINE land cover nomenclature, for an arearepresenting the heterogonous characteristics of eastern Mediterranean regions inKahramanmaras, Turkey. The results indicated that using the surface reflectance data ofASTER sensor imagery can provide accurate (i.e. overall accuracy and kappa values of83.2% and 0.79, respectively and low-cost cover mapping as a part of inventory forCORINE Land Cover Project.

  7. Using aster multispectral imagery for mapping woody invasive species in pico da vara natural reserve (Azores Islands, Portugal

    Directory of Open Access Journals (Sweden)

    Artur Gil

    2014-06-01

    Full Text Available This paper aims to assess the effectiveness of ASTER imagery to support the mapping of Pittosporum undulatum, an invasive woody species, in Pico da Vara Natural Reserve (S. Miguel Island, Archipelago of the Azores, Portugal. This assessment was done by applying K-Nearest Neighbor (KNN, Support Vector Machine (SVM and Maximum Likelihood (MLC pixel-based supervised classifications to 4 different geographic and remote sensing datasets constituted by the Visible, Near-Infrared (VNIR and Short Wave Infrared (SWIR of the ASTER sensor and by digital cartography associated to orography (altitude and "distance to water streams" of which the spatial distribution of Pittosporum undulatum directly depends. Overall, most performed classifications showed a strong agreement and high accuracy. At targeted species level, the two higher classification accuracies were obtained when applying MLC and KNN to the VNIR bands coupled with auxiliary geographic information use. Results improved significantly by including ecology and occurrence information of species (altitude and distance to water streams in the classification scheme. These results show that the use of ASTER sensor VNIR spectral bands, when coupled to relevant ancillary GIS data, can constitute an effective and low cost approach for the evaluation and continuous assessment of Pittosporum undulatum woodland propagation and distribution within Protected Areas of the Azores Islands.

  8. Civil engineering: calculations of pre-stressed concrete structures using CodeAster

    International Nuclear Information System (INIS)

    This document presents an analysis of the different calculation methods for pre-stressed concrete structure which can be performed by using finite element methods. Two methods of calculating the pre-stressing of concrete structures with finite elements have been determined. The equivalent method which consists of replacing the action of pre-stressing the concrete by equivalent forces. These method is well suited to dimensioning and studying the overall stability of a structure. It is not an easy matter to take into account the coupled or time-varying phenomena. This approach ignores the evolution of the interaction between the pre-stressing and the concrete. The explicit method which consists of including the mechanical resolution of the pre-stressed cables in that of a concrete structure. Not only does this allow a local study of the pre-stressed to be made, it also allows the coupling which developed over time to be determined, e.g. slip, deferred deformation and coupling between the steel and concrete behaviours. This method enables non-linear phenomena with varying degrees of complexity, such as fracture or yielding of the steels, drying out of the concrete, creep, etc to be described. The two methods are complementary. This document presents the mathematical and computer developments relating to each of this method. In the case of the explicit method, certain of the Code-Aster functions already make it possible to meet several EDF application requirements. Several couplings can be taken into account, such as thermomechanical, shrinkage in drying, creep, relaxation and injection of the cables. Three immediate developments of Code-Aster are proposed for the following applications: - a procedure for calculating the pre-stress losses along the pre-stressing cables; - a command to allocate these forces in the form of an initial force field in the bar elements associated with the cables; - a procedure for linking elements whose nodes do not coincide with each other

  9. Validation of the Aster Global Digital Elevation Model Version 3 Over the Conterminous United States

    Science.gov (United States)

    Gesch, D.; Oimoen, M.; Danielson, J.; Meyer, D.

    2016-06-01

    The ASTER Global Digital Elevation Model Version 3 (GDEM v3) was evaluated over the conterminous United States in a manner similar to the validation conducted for the original GDEM Version 1 (v1) in 2009 and GDEM Version 2 (v2) in 2011. The absolute vertical accuracy of GDEM v3 was calculated by comparison with more than 23,000 independent reference geodetic ground control points from the U.S. National Geodetic Survey. The root mean square error (RMSE) measured for GDEM v3 is 8.52 meters. This compares with the RMSE of 8.68 meters for GDEM v2. Another important descriptor of vertical accuracy is the mean error, or bias, which indicates if a DEM has an overall vertical offset from true ground level. The GDEM v3 mean error of -1.20 meters reflects an overall negative bias in GDEM v3. The absolute vertical accuracy assessment results, both mean error and RMSE, were segmented by land cover type to provide insight into how GDEM v3 performs in various land surface conditions. While the RMSE varies little across cover types (6.92 to 9.25 meters), the mean error (bias) does appear to be affected by land cover type, ranging from -2.99 to +4.16 meters across 14 land cover classes. These results indicate that in areas where built or natural aboveground features are present, GDEM v3 is measuring elevations above the ground level, a condition noted in assessments of previous GDEM versions (v1 and v2) and an expected condition given the type of stereo-optical image data collected by ASTER. GDEM v3 was also evaluated by differencing with the Shuttle Radar Topography Mission (SRTM) dataset. In many forested areas, GDEM v3 has elevations that are higher in the canopy than SRTM. The overall validation effort also included an evaluation of the GDEM v3 water mask. In general, the number of distinct water polygons in GDEM v3 is much lower than the number in a reference land cover dataset, but the total areas compare much more closely.

  10. Emplacement of Basaltic Flow Fields: New Insights Using MODIS/ASTER Airborne Simulator (MASTER) Data

    Science.gov (United States)

    Byrnes, J. M.; Ramsey, M. S.; Crown, D. A.

    2001-12-01

    Surface units that reflect local emplacement conditions within the 1969-1974 Mauna Ulu lava flow field (Kilauea Volcano, Hawaii) have been identified and are being mapped using field observations and remote sensing analyses. Investigation of a preliminary study site on and below Holei Pali utilized high-resolution color aerial photographs [Byrnes and Crown, 2000. J Geophys Res 106, 2139-2151] and TIMS (Thermal Infrared Multispectral Scanner) airborne data. Four surface units were identified that are related to the state of the lava during emplacement and were found to be correlated with the pre-eruption topography but not to the major lava tube segments mapped previously. These units show variations at visible wavelengths related to color, the presence of a glassy surface crust, and unit (dm- to m-scale) morphology. Variations at thermal wavelengths are presumably related to surface variations in phenocryst abundance, vesicles/micron-scale roughness, and glass. Interpretations based on the TIMS data are significantly limited by noise in available data covering the flow field. The present study uses MASTER (MODIS/ASTER airborne simulator) data to extend the spatial and spectral coverage of the Mauna Ulu flow field. Preliminary analyses of the data (corrected for atmospheric effects) indicate that: (1) additional classes of surface units (such as shelly pahoehoe) can be identified within the flow field, and (2) systematic changes in emplacement occurred from the proximal to the medial and distal portions of the flow field. Comparison with ASTER images indicates that similar classes of surface units may be discriminated in both datasets, though MASTER is preferable for this study because it provides: (1) higher spatial resolution (especially in thermal bands), and (2) constant pixel size for all wavelengths. These factors allow for discrimination of smaller flow units and more accurate correlation of visible- and thermal-wavelength spectral signatures. The higher

  11. Saturable binding of the echinoderm microtubule-associated protein (EMAP) on microtubules, but not filamentous actin or vimentin filaments.

    Science.gov (United States)

    Eichenmüller, B; Ahrens, D P; Li, Q; Suprenant, K A

    2001-11-01

    The echinoderm microtubule-associated protein (EMAP) is a 75-kDa, WD-repeat protein associated with the mitotic spindle apparatus. To understand EMAP's biological role, it is important to determine its affinity for microtubules (MTs) and other cytoskeletal components. To accomplish this goal, we utilized a low-cost, bubble-column bioreactor to express EMAP as a hexahistidine fusion (6his) protein in baculovirus-infected insect cells. After optimizing cell growth conditions, up to 30 mg of EMAP was obtained in the soluble cell lysate from a 1-liter culture. EMAP was purified to homogeneity in a two-step process that included immobilized metal-affinity chromatography (IMAC) and anion-exchange chromatography. In vitro binding studies on cytoskeletal components were performed with the 6his-EMAP. EMAP bound to MTs, but not actin or vimentin filaments, with an intrinsic dissociation constant of 0.18 microM and binding stoichiometry of 0.7 mol EMAP per mol tubulin heterodimer. In addition, we show that a strong MT binding domain resides in the 137 amino acid, NH(2)-terminus of EMAP and a weaker binding site in the WD-domain. Previous work has shown that the EMAP concentration in the sea urchin egg is over 4 microM. Together, these results show that there is sufficient EMAP in the egg to regulate the assembly of a large pool of maternally stored tubulin. PMID:11807937

  12. Advanced Spaceborne Thermal Emission and Reflection Radometer (ASTER) Enhanced Vegetation Index (EVI) Products from Global Earth Observation (GEO) Grid: An Assessment Using Moderate Resolution Imaging Spectroradiometer (MODIS) for Synergistic Applications

    OpenAIRE

    Satoshi Tsuchida; Tomoaki Miura; Hirokazu Yamamoto

    2012-01-01

    We assessed the compatibility of three Advanced Spaceborne Thermal Emission and Reflection Radometer (ASTER) based Enhanced Vegetation Index (EVI) products generated in the GEO Grid system to Moderate Resolution Imaging Spectroradiometer (MODIS) EVI. The three products were two forms of the two-band EVI with ASTER red and NIR bands but without a blue band and the original, three-band EVI computed with ASTER red and NIR, and MODIS blue reflectances. Our assessment results showed good compatibi...

  13. Assessment Of ASTER GDEM And SRTM Performance By Comparing With Survey Control Points And Icesat/GLAS Data

    Science.gov (United States)

    Jarihani, A. A.; Callow, J. N.

    2011-12-01

    Topographic data plays a critical role in water resources modeling with determining watershed hydrologic characteristics from raster-based digital elevation models (DEM). Raster-based DEMs have been widely used to derive topographic attributes used in hydraulic and hydrologic modeling such as slope, stream network, basins boundary and area. Accurate models of floodplain topography are essential for having accurate output of hydrologic models. The Shuttle Radar Topography Mission (SRTM) provides near-global topographic coverage of the Earth's surface with unprecedented consistency and accuracy with the resolution of 1-3 arc sec. A new Global Digital Elevation Model (GDEM) from optical stereo data acquired by the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) was recently released with the resolution of 1 arc sec. This study the performance of the ASTER GDEM and SRTM DEMs is assessed by comparing with ground-based survey control points and point data from ICESat/GLAS (Ice, Cloud, and land Elevation Satellite/Geoscience Laser Altimeter System) for a 7x7degree area in Queensland Australia. This area contains large and remote river basins, where these datasets provide an invaluable resource from which river floodplain inundation can be measured and modelled. Our study focuses on both data and datum issues, which are required to provide a realistic assessment of the achievable relative and absolute ground topographic accuracies. We assessed ground-based survey control points' with ICESat satellite altimetry points and in turn assessed accuracy of the ASTER GDEM and SRTM DEMs over the study area. ICESat provides globally-distributed elevation data of high accuracy (2.47.3 m horizontal error and 0.040.13 m (per degree of incidence angle) vertical error)We applied the GLA14 elevation products (Land/Canopy elevations) for the Laser 3a observation period and Release 31 to compare with 5000 ground survey control points in study area.Our ICESat

  14. Spatial distributions of the leafminer Ophiomyia maura (Diptera: Agromyzidae) in host plant Aster ageratoides

    Institute of Scientific and Technical Information of China (English)

    Yoshiko Ayabe; Ei'ichi Shibata

    2008-01-01

    The seasonal occurrence and among-plant and within-plant spatial distribution of the multivoltine leafminer Ophiomyia maura Meigen (Diptera: Agromyzidae) on the herbaceous plant Aster ageratoides Turcz. subsp, ovatus (Asteraceae) were investigated in the field. O. maura has at least four generations a year and mines per leaf fluctuate with a mean of 0.007 throughout the occurrence period. Seasonal occurrence is associated with abundance of new host leaves, suggesting O. maura females prefer to oviposit in newly emerged leaves. The among-plant distribution of O. maura is described by a Poisson distribution early in the season but tends to be weakly clumped later. The within-plant vertical distribution of larval mines increased from middle to upper leaves during plantdevelopment, because mined leaves in the middle position early in the season move downward with the emergence of new leaves, shifting mined leaves from the position where O. maura oviposits eggs. Later in the season, mined leaves remain where they are deposited because few new leaves emerge. The spatial distribution of O. rnaura, resource utilization patterns, and host plant characteristics are discussed.

  15. Comparison and analysis of bare soil evaporation models combined with ASTER data in Heihe River Basin

    Directory of Open Access Journals (Sweden)

    Yan-xia KANG

    2009-12-01

    Full Text Available Based on ASTER (Advanced Spaceborne Thermal Emission and Reflection Radiometer remote sensing data, bare soil evaporation was estimated with the Penman-Monteith model, the Priestley-Taylor model, and the aerodynamics model. Evaporation estimated by each of the three models was compared with actual evaporation, and error sources of the three models were analyzed. The mean absolute relative error was 9% for the Penman-Monteith model, 14% for the Priestley-Taylor model, and 32% for the aerodynamics model; the Penman-Monteith model was the best of these three models for estimating bare soil evaporation. The error source of the Penman-Monteith model is the neglect of the advection estimation. The error source of the Priestley-Taylor model is the simplification of the component of aerodynamics as 0.72 times the net radiation. The error source of the aerodynamics model is the difference of vapor pressure and neglect of the radiometric component. The spatial distribution of bare soil evaporation is evident, and its main factors are soil water content and elevation.

  16. A morphometric comparison of the Namib and southwest Kalahari dunefields using ASTER GDEM data

    Science.gov (United States)

    White, Kevin; Bullard, Joanna; Livingstone, Ian; Moran, Lisa

    2015-12-01

    The increased availability of digital elevation models and satellite image data enable testing of morphometric relationships between sand dune variables (dune height, spacing and equivalent sand thickness), which were originally established using limited field survey data. These long-established geomorphological hypotheses can now be tested against very much larger samples than were possible when available data were limited to what could be collected by field surveys alone. This project uses ASTER global digital elevation model (GDEM) data to compare morphometric relationships between sand dune variables in the southwest Kalahari dunefield to those of the Namib sand sea, to test whether the relationships found in an active sand sea (Namib) also hold for the fixed dune system of the nearby southwest Kalahari. The data show significant morphometric differences between the simple linear dunes of the Namib sand sea and the southwest Kalahari; the latter do not show the expected positive relationship between dune height and spacing. The southwest Kalahari dunes show a similar range of dune spacings, but they are less tall, on average, than the Namib sand sea dunes. There is a clear spatial pattern to these morphometric data; the tallest and most closely spaced dunes are towards the southeast of the Kalahari dunefield; and this is where the highest values of equivalent sand thickness result. We consider the possible reasons for the observed differences and highlight the need for more studies comparing sand seas and dunefields from different environmental settings.

  17. Per-Field Irrigated Crop Classification in Arid Central Asia Using SPOT and ASTER Data

    Directory of Open Access Journals (Sweden)

    Christopher Conrad

    2010-04-01

    Full Text Available The overarching goal of this research was to explore accurate methods of mapping irrigated crops, where digital cadastre information is unavailable: (a Boundary separation by object-oriented image segmentation using very high spatial resolution (2.5–5 m data was followed by (b identification of crops and crop rotations by means of phenology, tasselled cap, and rule-based classification using high resolution (15–30 m bi-temporal data. The extensive irrigated cotton production system of the Khorezm province in Uzbekistan, Central Asia, was selected as a study region. Image segmentation was carried out on pan-sharpened SPOT data. Varying combinations of segmentation parameters (shape, compactness, and color were tested for optimized boundary separation. The resulting geometry was validated against polygons digitized from the data and cadastre maps, analysing similarity (size, shape and congruence. The parameters shape and compactness were decisive for segmentation accuracy. Differences between crop phenologies were analyzed at field level using bi-temporal ASTER data. A rule set based on the tasselled cap indices greenness and brightness allowed for classifying crop rotations of cotton, winter-wheat and rice, resulting in an overall accuracy of 80 %. The proposed field-based crop classification method can be an important tool for use in water demand estimations, crop yield simulations, or economic models in agricultural systems similar to Khorezm.

  18. Feature level fusion for enhanced geological mapping of ophiolile complex using ASTER and Landsat TM data

    International Nuclear Information System (INIS)

    Chromite ore deposit occurrence is related to ophiolite complexes as a part of the oceanic crust and provides a good opportunity for lithological mapping using remote sensing data. The main contribution of this paper is a novel approaches to discriminate different rock units associated with ophiolite complex using the Feature Level Fusion technique on ASTER and Landsat TM satellite data at regional scale. In addition this study has applied spectral transform approaches, consisting of Spectral Angle Mapper (SAM) to distinguish the concentration of high-potential areas of chromite and also for determining the boundary between different rock units. Results indicated both approaches show superior outputs compared to other methods and can produce a geological map for ophiolite complex rock units in the arid and the semi-arid region. The novel technique including feature level fusion and Spectral Angle Mapper (SAM) discriminated ophiolitic rock units and produced detailed geological maps of the study area. As a case study, Sikhoran ophiolite complex located in SE, Iran has been selected for image processing techniques. In conclusion, a suitable approach for lithological mapping of ophiolite complexes is demonstrated, this technique contributes meaningfully towards economic geology in terms of identifying new prospects

  19. The complete chloroplast genome sequence of Aster spathulifolius (Asteraceae); genomic features and relationship with Asteraceae.

    Science.gov (United States)

    Choi, Kyoung Su; Park, SeonJoo

    2015-11-10

    Aster spathulifolius, a member of the Asteraceae family, is distributed along the coast of Japan and Korea. This plant is used for medicinal and ornamental purposes. The complete chloroplast (cp) genome of A. sphathulifolius consists of 149,473 bp that include a pair of inverted repeats of 24,751 bp separated by a large single copy region of 81,998 bp and a small single copy region of 17,973 bp. The chloroplast genome contains 78 coding genes, four rRNA genes and 29 tRNA genes. When compared to other cpDNA sequences of Asteraceae, A. spathulifolius showed the closest relationship with Jacobaea vulgaris, and its atpB gene was found to be a pseudogene, unlike J. vulgaris. Furthermore, evaluation of the gene compositions of J. vulgaris, Helianthus annuus, Guizotia abyssinica and A. spathulifolius revealed that 13.6-kb showed inversion from ndhF to rps15, unlike Lactuca of Asteraceae. Comparison of the synonymous (Ks) and nonsynonymous (Ka) substitution rates with J. vulgaris revealed that synonymous genes related to a small subunit of the ribosome showed the highest value (0.1558), while nonsynonymous rates of genes related to ATP synthase genes were highest (0.0118). These findings revealed that substitution has occurred at similar rates in most genes, and the substitution rates suggested that most genes is a purified selection. PMID:26164759

  20. Accuracy Improvement of ASTER Stereo Satellite Generated DEM Using Texture Filter

    Institute of Scientific and Technical Information of China (English)

    Mandla V. Ravibabu; Kamal Jain; Surendra Pal Singh; Naga Jyothi Meeniga

    2010-01-01

    The grid DEM (digital elevation model) generation can be from any of a number of sources: for instance, analogue to digital conversion of contour maps followed by application of the TIN model, or direct elevation point modelling via digital photogrammetry applied to airborne images or satellite images. Currently, apart from the deployment of point-clouds from LiDAR data acquisition, the generally favoured approach refers to applications of digital photogrammetry. One of the most important steps in such deployment is the stereo matching process for conjugation point (pixel) establishment: very difficult in modelling any homogenous areas like water cover or forest canopied areas due to the lack of distinct spatial features. As a result, application of automated procedures is sure to generate erroneous elevation values. In this paper, we present and apply a method for improving the quality of stereo DEMs generated via utilization of an entropy texture filter. The filter was applied for extraction of homogenous areas before stereo matching so that a statistical texture filter could then be applied for removing anomalous evaluation values prior to interpolation and accuracy assessment via deployment of a spatial correlation technique. For exemplification, we used a stereo pair of ASTER 1B images.

  1. Synthesis and SAR requirements of adamantane-colchicine conjugates with both microtubule depolymerizing and tubulin clustering activities.

    Science.gov (United States)

    Zefirova, Olga N; Nurieva, Evgeniya V; Shishov, Dmitrii V; Baskin, Igor I; Fuchs, Fabian; Lemcke, Heiko; Schröder, Fabian; Weiss, Dieter G; Zefirov, Nikolay S; Kuznetsov, Sergei A

    2011-09-15

    A series of analogues of conjugate 1, combining an adamantane-based paclitaxel (taxol) mimetic with colchicine was synthesized and tested for cytotoxicity in a cell-based assay with the human lung carcinoma cell line A549. The most active compounds (10 EC(50) 2 ± 1.0 nM, 23 EC(50) 6 ± 1.4 nM, 26 EC(50) 5 ± 1.8 nM, 28 EC(50) 11 ± 1.7 nM, 30 EC(50) 4.8 ± 0.5 nM) were found to interfere with the microtubule dynamics in an interesting manner. Treatment of the cells with these compounds promoted disassembly of microtubules followed by the formation of stable tubulin clusters. Structure-activity relationships for the analogues of 23 revealed the sensitivity of both cytotoxicity and tubulin clustering ability to the linker length. The presence of adamantane (or another bulky hydrophobic and non-aromatic moiety) in 23 was found to play an important role in the formation of tubulin clusters. Structural requirements for optimal activity have been partially explained by molecular modeling. PMID:21873068

  2. Characterization of tub4P287L, a b-tubulin mutant, revealed new aspects of microtubule regulation in shade

    Institute of Scientific and Technical Information of China (English)

    Jie Yu; Hong Qiu; Xin Liu; Meiling Wang; Yongli Gao; Joanne Chory; Yi Tao

    2015-01-01

    When sun plants, such as Arabidopsis thaliana, are under canopy shade, elongation of stems/petioles will be induced as one of the most prominent responses. Plant hormones mediate the elongation growth. However, how environmental and hormonal signals are translated into cell expansion activity that leads to the elongation growth remains elusive. Through forward genetic study, we identi-fied shade avoidance2 (sav2) mutant, which contains a P287L mutation in b-TUBULIN 4. Cortical microtubules (cMTs) play a key role in anisotropic cell growth. Hypocotyls of sav2 are wild type-like in white light, but are short and highly swollen in shade and dark. We showed that shade not only induces cMT rearrangement, but also affects cMT stability and dynamics of plus ends. Even though auxin and brassinosteroids are required for shade-induced hypocotyl elongation, they had little effect on shade-induced rearrangement of cMTs. Blocking auxin transport suppressed dark phenotypes of sav2, while overexpressing EB1b-GFP, a microtubule plus-end binding protein, rescued sav2 in both shade and dark, suggesting that tub4P287L represents a unique type of tubulin mutation that does not affect cMT function in supporting cell elongation, but may affect the ability of cMTs to respond properly to growth promoting stimuli.

  3. Altered nucleotide-microtubule coupling and increased mechanical output by a kinesin mutant.

    Directory of Open Access Journals (Sweden)

    Hong-Lei Liu

    Full Text Available Kinesin motors hydrolyze ATP to produce force and do work in the cell--how the motors do this is not fully understood, but is thought to depend on the coupling of ATP hydrolysis to microtubule binding by the motor. Transmittal of conformational changes from the microtubule- to the nucleotide-binding site has been proposed to involve the central β-sheet, which could undergo large structural changes important for force production. We show here that mutation of an invariant residue in loop L7 of the central β-sheet of the Drosophila kinesin-14 Ncd motor alters both nucleotide and microtubule binding, although the mutated residue is not present in either site. Mutants show weak-ADP/tight-microtubule binding, instead of tight-ADP/weak-microtubule binding like wild type--they hydrolyze ATP faster than wild type, move faster in motility assays, and assemble long spindles with greatly elongated poles, which are also produced by simulations of assembly with tighter microtubule binding and faster sliding. The mutated residue acts like a mechanochemical coupling element--it transmits changes between the microtubule-binding and active sites, and can switch the state of the motor, increasing mechanical output by the motor. One possibility, based on our findings, is that movements by the residue and the loop that contains it could bend or distort the central β-sheet, mediating free energy changes that lead to force production.

  4. Anillin interacts with microtubules and is part of the astral pathway that defines cortical domains.

    Science.gov (United States)

    van Oostende Triplet, Chloe; Jaramillo Garcia, Melina; Haji Bik, Husni; Beaudet, Daniel; Piekny, Alisa

    2014-09-01

    Cytokinesis occurs by the ingression of an actomyosin ring that separates the cell into two daughter cells. The mitotic spindle, comprising astral and central spindle microtubules, couples contractile ring ingression with DNA segregation. Cues from the central spindle activate RhoA, the upstream regulator of the contractile ring. However, additional cues from the astral microtubules also reinforce the localization of active RhoA. Using human cells, we show that astral and central spindle microtubules independently control the localization of contractile proteins during cytokinesis. Astral microtubules restrict the accumulation and localization of contractile proteins during mitosis, whereas the central spindle forms a discrete ring by directing RhoA activation in the equatorial plane. Anillin stabilizes the contractile ring during cytokinesis. We show that human anillin interacts with astral microtubules and that this interaction is competed by the cortical recruitment of anillin by active RhoA. Anillin restricts the localization of myosin to the equatorial cortex and that of NuMA (part of the microtubule-tethering complex that regulates spindle position) to the polar cortex. The sequestration of anillin by astral microtubules might alter the organization of cortical proteins to polarize cells for cytokinesis. PMID:24994938

  5. Probing a self-assembled fd virus membrane with a microtubule

    Science.gov (United States)

    Xie, Sheng; Pelcovits, Robert A.; Hagan, Michael F.

    2016-06-01

    The self-assembly of highly anisotropic colloidal particles leads to a rich variety of morphologies whose properties are just beginning to be understood. This article uses computer simulations to probe a particle-scale perturbation of a commonly studied colloidal assembly, a monolayer membrane composed of rodlike fd viruses in the presence of a polymer depletant. Motivated by experiments currently in progress, we simulate the interaction between a microtubule and a monolayer membrane as the microtubule "pokes" and penetrates the membrane face-on. Both the viruses and the microtubule are modeled as hard spherocylinders of the same diameter, while the depletant is modeled using ghost spheres. We find that the force exerted on the microtubule by the membrane is zero either when the microtubule is completely outside the membrane or when it has fully penetrated the membrane. The microtubule is initially repelled by the membrane as it begins to penetrate but experiences an attractive force as it penetrates further. We assess the roles played by translational and rotational fluctuations of the viruses and the osmotic pressure of the polymer depletant. We find that rotational fluctuations play a more important role than the translational ones. The dependence on the osmotic pressure of the depletant of the width and height of the repulsive barrier and the depth of the attractive potential well is consistent with the assumed depletion-induced attractive interaction between the microtubule and viruses. We discuss the relevance of these studies to the experimental investigations.

  6. MTB-3, a microtubule plus-end tracking protein (+TIP of Neurospora crassa.

    Directory of Open Access Journals (Sweden)

    Rosa R Mouriño-Pérez

    Full Text Available The microtubule (MT "plus end" constitutes the platform for the accumulation of a structurally and functionally diverse group of proteins, collectively called "MT plus-end tracking proteins" (+TIPs. +TIPs control MT dynamics and link MTs to diverse sub-cellular structures. Neurospora crassaMicroTubule Binding protein-3 (MTB-3 is the homolog of yeast EB1, a highly conserved +TIP. To address the function of MTB-3, we examined strains with mtb-3 deletions, and we tagged MTB-3 with GFP to assess its dynamic behavior. MTB-3-GFP was present as comet-like structures distributed more or less homogeneously within the hyphal cytoplasm, and moving mainly towards the apex at speeds up to 4× faster than the normal hyphal elongation rates. MTB-3-GFP comets were present in all developmental stages, but were most abundant in mature hyphae. MTB-3-GFP comets were observed moving in anterograde and retrograde direction along the hypha. Retrograde movement was also observed as originating from the apical dome. The integrity of the microtubular cytoskeleton affects the presence and dynamics of MTB-3-GFP comets, while actin does not seem to play a role. The size of MTB-3-GFP comets is affected by the absence of dynactin and conventional kinesin. We detected no obvious morphological phenotypes in Δmtb-3 mutants but there were fewer MTs in Δmtb-3, MTs were less bundled and less organized. Compared to WT, both MT polymerization and depolymerization rates were significantly decreased in Δmtb-3. In summary, the lack of MTB-3 affects overall growth and morphological phenotypes of N. crassa only slightly, but deletion of mtb-3 has strong effect on MT dynamics.

  7. Detyrosinated microtubules buckle and bear load in contracting cardiomyocytes.

    Science.gov (United States)

    Robison, Patrick; Caporizzo, Matthew A; Ahmadzadeh, Hossein; Bogush, Alexey I; Chen, Christina Yingxian; Margulies, Kenneth B; Shenoy, Vivek B; Prosser, Benjamin L

    2016-04-22

    The microtubule (MT) cytoskeleton can transmit mechanical signals and resist compression in contracting cardiomyocytes. How MTs perform these roles remains unclear because of difficulties in observing MTs during the rapid contractile cycle. Here, we used high spatial and temporal resolution imaging to characterize MT behavior in beating mouse myocytes. MTs deformed under contractile load into sinusoidal buckles, a behavior dependent on posttranslational "detyrosination" of α-tubulin. Detyrosinated MTs associated with desmin at force-generating sarcomeres. When detyrosination was reduced, MTs uncoupled from sarcomeres and buckled less during contraction, which allowed sarcomeres to shorten and stretch with less resistance. Conversely, increased detyrosination promoted MT buckling, stiffened the myocyte, and correlated with impaired function in cardiomyopathy. Thus, detyrosinated MTs represent tunable, compression-resistant elements that may impair cardiac function in disease. PMID:27102488

  8. Conformational mechanism for the stability of microtubule-kinetochore attachments

    CERN Document Server

    Bertalan, Zsolt; Maiato, Helder; Zapperi, Stefano

    2014-01-01

    Regulating the stability of microtubule(MT)-kinetochore attachments is fundamental to avoiding mitotic errors and ensure proper chromosome segregation during cell division. While biochemical factors involved in this process have been identified, its mechanics still needs to be better understood. Here we introduce and simulate a mechanical model of MT-kinetochore interactions in which the stability of the attachment is ruled by the geometrical conformations of curling MT-protofilaments entangled in kinetochore fibrils. The model allows us to reproduce with good accuracy in vitro experimental measurements of the detachment times of yeast kinetochores from MTs under external pulling forces. Numerical simulations suggest that geometrical features of MT-protofilaments may play an important role in the switch between stable and unstable attachments.

  9. HSPB1 facilitates the formation of non-centrosomal microtubules.

    Directory of Open Access Journals (Sweden)

    Leonardo Almeida-Souza

    Full Text Available The remodeling capacity of microtubules (MT is essential for their proper function. In mammals, MTs are predominantly formed at the centrosome, but can also originate from non-centrosomal sites, a process that is still poorly understood. We here show that the small heat shock protein HSPB1 plays a role in the control of non-centrosomal MT formation. The HSPB1 expression level regulates the balance between centrosomal and non-centrosomal MTs. The HSPB1 protein can be detected specifically at sites of de novo forming non-centrosomal MTs, while it is absent from the centrosomes. In addition, we show that HSPB1 binds preferentially to the lattice of newly formed MTs in vitro, suggesting that its function occurs by stabilizing MT seeds. Our findings open new avenues for the understanding of the role of HSPB1 in the development, maintenance and protection of cells with specialized non-centrosomal MT arrays.

  10. A Mechanism for Cytoplasmic Streaming: Kinesin-Driven Alignment of Microtubules and Fast Fluid Flows.

    Science.gov (United States)

    Monteith, Corey E; Brunner, Matthew E; Djagaeva, Inna; Bielecki, Anthony M; Deutsch, Joshua M; Saxton, William M

    2016-05-10

    The transport of cytoplasmic components can be profoundly affected by hydrodynamics. Cytoplasmic streaming in Drosophila oocytes offers a striking example. Forces on fluid from kinesin-1 are initially directed by a disordered meshwork of microtubules, generating minor slow cytoplasmic flows. Subsequently, to mix incoming nurse cell cytoplasm with ooplasm, a subcortical layer of microtubules forms parallel arrays that support long-range, fast flows. To analyze the streaming mechanism, we combined observations of microtubule and organelle motions with detailed mathematical modeling. In the fast state, microtubules tethered to the cortex form a thin subcortical layer and undergo correlated sinusoidal bending. Organelles moving in flows along the arrays show velocities that are slow near the cortex and fast on the inward side of the subcortical microtubule layer. Starting with fundamental physical principles suggested by qualitative hypotheses, and with published values for microtubule stiffness, kinesin velocity, and cytoplasmic viscosity, we developed a quantitative coupled hydrodynamic model for streaming. The fully detailed mathematical model and its simulations identify key variables that can shift the system between disordered (slow) and ordered (fast) states. Measurements of array curvature, wave period, and the effects of diminished kinesin velocity on flow rates, as well as prior observations on f-actin perturbation, support the model. This establishes a concrete mechanistic framework for the ooplasmic streaming process. The self-organizing fast phase is a result of viscous drag on kinesin-driven cargoes that mediates equal and opposite forces on cytoplasmic fluid and on microtubules whose minus ends are tethered to the cortex. Fluid moves toward plus ends and microtubules are forced backward toward their minus ends, resulting in buckling. Under certain conditions, the buckling microtubules self-organize into parallel bending arrays, guiding varying directions

  11. Communication between the AAA+ ring and microtubule-binding domain of dynein1

    OpenAIRE

    Carter, Andrew P.; Vale, Ronald D.

    2010-01-01

    Dyneins are microtubule motors, the core of which consists of a ring of AAA+ domains. ATP-driven conformational changes of the AAA+ ring are used to drive the movement of a mechanical element (termed the linker domain) that provides the motor’s powerstroke and to change the affinity of the motor for microtubules (strong binding during the power stroke and weak binding to allow stepping and recocking of the linker domain). Dynein’s microtubule-binding domain (MTBD) is located at the end of a 1...

  12. Polypyrrole microtubules and their use in the construction of a third generation biosensor

    Energy Technology Data Exchange (ETDEWEB)

    Koopal, C.G.J.; Feiters, M.C.; Nolte, R.J.M. (Nijmegen SON Research Center, Univ. of Nijmegen (Netherlands)); Ruiter, B. de (TNO Industrial Research, Plastics and Rubber Research Inst., Delft (Netherlands)); Schasfoort, R.B.M. (TNO Food Research, Inst. of Biotechnology and Chemistry, Zeist (Netherlands)); Czajka, R.; Kempen, H. van (Univ. of Nijmegen, Research Inst. for Materials (Netherlands))

    1992-09-01

    Conducting polypyrrole microtubules have been prepared by template synthesis inside track-etch membranes. The interiors of these microtubules can adsorb the redox enzyme, glucose oxidase. The enzyme-coated tubules have been employed in the construction of a third generation amperometric biosensor for the determination of glucose. With this biosensor, glucose concentrations in the range 0.1 - 250 mM can be measured easily. The polypyrrole microtubules have been characterized by different microscopic techniques, including scanning tunneling microscopy. Based on the microscopy data, a model is presented for the interaction between the conducting polymer and the glucose oxidase molecules. (orig.).

  13. Glacier mass change evaluation in Lambert-Amery Area from 2002 to 2012 using ASTER stereo images and ICESat GLAS laser altimetry

    International Nuclear Information System (INIS)

    Currently, one of the major issues is to transform different remote sensing observations into a global reference for sustainable global-scale glacier change monitoring. In order to put glacier changes into a broader temporal context, it is desirable to extend the glacier observation time as far back as possible. In this paper, we present a case study of registering ASTER satellite stereo images to ICESat GLAS laser altimetry data, by matching terrain features identified from the ICESat measurements to those corresponding in the ASTER images. Features like ridges and nunatak can be extracted from ICESat data, and these features can also be measured in ASTER stereo images. A rigid body transformation (3 translations, 3 rotations) is applied for an optimal fit of these two sets of feature points. After transforming the ASTER photogrammetry measurements into the ICESat reference frame, we compute elevation change rates at each ICESat point by using a linear interpolation to obtain an estimate of surface elevation from ASTER. The surface firn/ice density model is used in converting the elevation changes to mass changes. Our study indicates that Lambert Glacier is close to being in mass balance between 2002 and 2012

  14. Atividade antibacteriana e antifúngica de extratos etanólicos de Aster lanceolatus Willd., Asteraceae Antibacterial and antifungal activity of ethanolics extracts from Aster lanceolatus Willd., Asteraceae

    OpenAIRE

    Josiane F. Gaspari Dias; Suzane Virtuoso; Aline Davet; Miriam M. Cunico; Marilis D. Miguel; Obdúlio G. Miguel; Celso G. Auer; Albino Grigoletti-Júnior; Andressa B. Oliveira; Marlene L. Ferronato

    2006-01-01

    Conhecida popularmente como áster-arbustiva, margarida-de-são-miguel e monte-cassino, Aster lanceolatus é uma planta ornamental de corte. Sabendo-se que não existem estudos que atestem a atividade biológica desta espécie, procurou-se neste trabalho atividades antibacteriana e antifúngica. Para tanto se utilizaram extratos brutos etanólicos de duas porções distintas, das flores e dos caules com folhas. Para a atividade antibacteriana, oito bactérias patogênicas foram submetidas a ensaio de dif...

  15. IMÁGENES ASTER EN LA DISCRIMINACIÓN DE ÁREAS DE USO AGRÍCOLA EN COLOMBIA ASTER IMAGES FOR DISCRIMINATION OF AGRICULTURAL USE AREAS IN COLOMBIA

    OpenAIRE

    Nidia Esperanza Ortiz Lozano; Uriel Pérez Gómez

    2009-01-01

    El avance de las tecnologías de la información geográfica ha llevado a la puesta de nuevos sensores para observación de la tierra. ASTER (Advanced Spaceborne Termal Emission and Reflection Radiometer), considerado como sensor de última generación, posee características especiales que lo colocan como una alternativa para estudios de la cobertura vegetal de la tierra. El presente trabajo se basó en sus características espaciales, espectrales y radiométricas con el fin de discriminar las áreas d...

  16. Clasificación de yeso mediante imágenes ASTER en la Cordillera Principal Mendocina Gypsum classification based on ASTER images in the Principal Cordillera of Mendoza

    OpenAIRE

    José F Mescua

    2010-01-01

    Se presenta una metodología para obtener el mapa de distribución de yeso con imágenes satelitales ASTER. Se utilizaron imágenes con nivel de procesamiento ASTERL3A correspondientes a dos áreas de la Cordillera Principal mendocina. La estratigrafía de las áreas de estudio se encuentra compuesta por una espesa sucesión sedimentaria mesozoica, volcanitas cenozoicas y depósitos cuaternarios. Dentro de los depósitos mesozoicos se encuentra la Formación Auquilco, integrada por yeso y anhidrita. El ...

  17. An Improved Method to Retrieve Surface Emissivity in a Canary Pine Forest Using Aster Data

    Science.gov (United States)

    Barreto-Velasco, Africa; Hernandez-Leal, Pedro A.; Arbelo, Manuel; Podesta, Guillermo P.

    2012-07-01

    The widely-used Temperature and Emissivity Separation (TES) algorithm has been shown to provide reliable temperature and emissivity estimates from land-leaving thermal data. Nevertheless, TES has some important limitations mainly related to its inability to correct important inaccuracies for gray bodies, such as vegetation. In this study, this problem is addressed through an improvement to the current NEM (Normalized Emissivity Method) module included in the TES algorithm. The proposed method, called Modified NEM (ModNEM), has been specifically designed to retrieve an accurate surface emissivity for bodies with a spectral behavior typical of gray-bodies, i. e., flat and near spectrally invariant. ModNEM selects two different approximations of surface temperature instead of the usual maximum temperature, with the aim of accounting for the peculiar spectral behavior of brightness temperature and emissivity for vegetation. The NEM and TES, as well as the ModNEM, have been used to recover surface emissivity in a pine forest located in Tenerife Island (Canary Islands, Spain) using data from the Advanced Spaceborne Thermal Emission Reflection Radiometer (ASTER). Results have been compared and validated using reference emissivity values obtained from the pines by means of the box method. This validation study showed that high uncertainties are associated with the standard techniques (up to 0.034), whereas ModNEM results in lower uncertainties in emissivity estimates (NEM module are not suitable for surfaces with a spectral behavior similar to a grey body. This work was supported by MICINN under Grant CGL2010-22189-C02.

  18. ALR - Laser altimeter for the ASTER deep space mission. Simulated operation above a surface with crater

    Science.gov (United States)

    de Brum, A. G. V.; da Cruz, F. C.; Hetem, A., Jr.

    2015-10-01

    To assist in the investigation of the triple asteroid system 2001-SN263, the deep space mission ASTER will carry onboard a laser altimeter. The instrument was named ALR and its development is now in progress. In order to help in the instrument design, with a view to the creation of software to control the instrument, a package of computer programs was produced to simulate the operation of a pulsed laser altimeter with operating principle based on the measurement of the time of flight of the travelling pulse. This software Simulator was called ALR_Sim, and the results obtained with its use represent what should be expected as return signal when laser pulses are fired toward a target, reflect on it and return to be detected by the instrument. The program was successfully tested with regard to some of the most common situations expected. It constitutes now the main workbench dedicated to the creation and testing of control software to embark in the ALR. In addition, the Simulator constitutes also an important tool to assist the creation of software to be used on Earth, in the processing and analysis of the data received from the instrument. This work presents the results obtained in the special case which involves the modeling of a surface with crater, along with the simulation of the instrument operation above this type of terrain. This study points out that the comparison of the wave form obtained as return signal after reflection of the laser pulse on the surface of the crater with the expected return signal in the case of a flat and homogeneous surface is a useful method that can be applied for terrain details extraction.

  19. Diacylglycerol Guides the Hopping of Clathrin-Coated Pits along Microtubules for Exo-Endocytosis Coupling.

    Science.gov (United States)

    Yuan, Tianyi; Liu, Lin; Zhang, Yongdeng; Wei, Lisi; Zhao, Shiqun; Zheng, Xiaolu; Huang, Xiaoshuai; Boulanger, Jerome; Gueudry, Charles; Lu, Jingze; Xie, Lihan; Du, Wen; Zong, Weijian; Yang, Lu; Salamero, Jean; Liu, Yanmei; Chen, Liangyi

    2015-10-12

    Many receptor-mediated endocytic processes are mediated by constitutive budding of clathrin-coated pits (CCPs) at spatially randomized sites before slowly pinching off from the plasma membrane (60-100 s). In contrast, clathrin-mediated endocytosis (CME) coupled with regulated exocytosis in excitable cells occurs at peri-exocytic sites shortly after vesicle fusion (∼10 s). The molecular mechanism underlying this spatiotemporal coupling remains elusive. We show that coupled endocytosis makes use of pre-formed CCPs, which hop to nascent fusion sites nearby following vesicle exocytosis. A dynamic cortical microtubular network, anchored at the cell surface by the cytoplasmic linker-associated protein on microtubules and the LL5β/ELKS complex on the plasma membrane, provides the track for CCP hopping. Local diacylglycerol gradients generated upon exocytosis guide the direction of hopping. Overall, the CCP-cytoskeleton-lipid interaction demonstrated here mediates exocytosis-coupled fast recycling of both plasma membrane and vesicular proteins, and it is required for the sustained exocytosis during repetitive stimulations. PMID:26439397

  20. Role of microtubules in the intracellular distribution of tobacco mosaic virus movement protein.

    Science.gov (United States)

    Mas, P; Beachy, R N

    2000-10-24

    Despite its central role in virus infection, little is known about the mechanisms of intracellular trafficking of virus components within infected cells. In this study, we followed the dynamics of tobacco mosaic virus movement protein (MP) distribution in living protoplasts after disruption of microtubules (MTs) by cold treatment and subsequent rewarming to 29 degrees C. At early stages of infection, cold treatment (4 degrees C) caused the accumulation of MP fused to green fluorescent protein (GFP) in large virus replication bodies that localized in perinuclear positions, whereas at midstages of infection, the association of MP:GFP with MTs was disrupted. Rewarming the protoplasts to 29 degrees C reestablished the association of MTs with the replication bodies that subsequently spread throughout the cytoplasm and to the periphery of the cell. The role of MTs in the intracellular distribution of the MP also was analyzed by examining the distribution pattern of a nonfunctional mutant of MP (TAD5). Like MP:GFP, TAD5:GFP interacted with the endoplasmic reticulum membranes and colocalized with its viral RNA but did not colocalize with MTs. The involvement of MTs in the intracellular distribution of tobacco mosaic virus MP is discussed. PMID:11050252

  1. Computational Study of Pseudo-phosphorylation of the Microtubule associated Protein Tau

    Science.gov (United States)

    Prokopovich, Dmitriy; Larini, Luca

    This computational study focuses on the effect of pseudo-phosphorylation on the aggregation of the microtubule associated protein tau. In the axon of the neuron, tau regulates the assembly of microtubules in the cytoskeleton. This is important for both stabilization of and transport across the microtubules. One of the hallmarks of the Alzheimer's disease is that tau is hyper-phosphorylated and aggregates into neurofibrillary tangles that lay waste to the neurons. It is not known if hyper-phosphorylation directly causes the aggregation of tau into tangles. Experimentally, pseudo-phosphorylation mimics the effects of phosphorylation by mutating certain residues of the protein chain into charged residues. In this study, we will consider the fragment called PHF43 that belongs to the microtubule binding region and has been shown to readily aggregate.

  2. Shot and Patronin polarise microtubules to direct membrane traffic and biogenesis of microvilli in epithelia.

    Science.gov (United States)

    Khanal, Ichha; Elbediwy, Ahmed; Diaz de la Loza, Maria Del Carmen; Fletcher, Georgina C; Thompson, Barry J

    2016-07-01

    In epithelial tissues, polarisation of microtubules and actin microvilli occurs along the apical-basal axis of each cell, yet how these cytoskeletal polarisation events are coordinated remains unclear. Here, we examine the hierarchy of events during cytoskeletal polarisation in Drosophila melanogaster epithelia. Core apical-basal polarity determinants polarise the spectrin cytoskeleton to recruit the microtubule-binding proteins Patronin (CAMSAP1, CAMSAP2 and CAMPSAP3 in humans) and Shortstop [Shot; MACF1 and BPAG1 (also known as DST) in humans] to the apical membrane domain. Patronin and Shot then act to polarise microtubules along the apical-basal axis to enable apical transport of Rab11 endosomes by the Nuf-Dynein microtubule motor complex. Finally, Rab11 endosomes are transferred to the MyoV (also known as Didum in Drosophila) actin motor to deliver the key microvillar determinant Cadherin 99C to the apical membrane to organise the biogenesis of actin microvilli. PMID:27231092

  3. Survivin counteracts the therapeutic effect of microtubule de-stabilizers by stabilizing tubulin polymers

    Directory of Open Access Journals (Sweden)

    Hsieh Hsing-Pang

    2009-07-01

    Full Text Available Abstract Background Survivin is a dual function protein. It inhibits the apoptosis of cells by inhibiting caspases, and also promotes cell growth by stabilizing microtubules during mitosis. Over-expression of survivin has been demonstrated to induce drug-resistance to various chemo-therapeutic agents such as cisplatin (DNA damaging agent and paclitaxel (microtubule stabilizer in cancers. However, survivin-induced resistance to microtubule de-stabilizers such as Vinca alkaloids and Combretastatin A-4 (CA-4-related compounds were seldom demonstrated in the past. Furthermore, the question remains as to whether survivin plays a dominant role in processing cytokinesis or inhibiting caspases activity in cells treated with anti-mitotic compounds. The purpose of this study is to evaluate the effect of survivin on the resistance and susceptibility of human cancer cells to microtubule de-stabilizer-induced cell death. Results BPR0L075 is a CA-4 analog that induces microtubule de-polymerization and subsequent caspase-dependent apoptosis. To study the relationship between the expression of survivin and the resistance to microtubule de-stabilizers, a KB-derived BPR0L075-resistant cancer cell line, KB-L30, was generated for this study. Here, we found that survivin was over-expressed in the KB-L30 cells. Down-regulation of survivin by siRNA induced hyper-sensitivity to BPR0L075 in KB cells and partially re-stored sensitivity to BPR0L075 in KB-L30 cells. Western blot analysis revealed that down-regulation of survivin induced microtubule de-stabilization in both KB and KB-L30 cells. However, the same treatment did not enhance the down-stream caspase-3/-7 activities in BPR0L075-treated KB cells. Translocation of a caspase-independent apoptosis-related molecule, apoptosis-inducing factor (AIF, from cytoplasm to the nucleus was observed in survivin-targeted KB cells under BPR0L075 treatment. Conclusion In this study, survivin plays an important role in the

  4. Characterization of land surface energy fluxes at the Salar de Atacama, Northern Chile using ASTER image classification

    Science.gov (United States)

    Kampf, S. K.; Tyler, S. W.

    2003-12-01

    Models of land surface energy fluxes often use remotely sensed data to derive surface temperature, albedo, and emissivity, important parameters in energy budget calculations. The ability to determine the spatial distribution of these parameters can lead to improved estimations of the spatial variability of land surface energy fluxes. However, other parameters used in energy flux calculations such as aerodynamic resistance are not directly linked to quantities commonly derived from remotely sensed data. If images can be accurately classified into separate land cover types, empirically determined values of unknown parameters can then be assigned separately to each land cover classification. This study examines several techniques of determining the spatial distribution of land surface energy fluxes at the Salar de Atacama, a large playa in northern Chile. Fluxes are calculated using Advanced Spaceborne Thermal Emission and Reflection radiometer (ASTER) Level 2 surface kinetic temperature, surface emissivity, and surface reflectance data in conjunction with ground-based meteorological measurements. Energy fluxes are calculated initially by applying a single value of aerodynamic resistance to the entire image area. Subsequently, the ASTER scene is classified into distinct land cover types, and land surface roughness is characterized using the ratio of ASTER band 3N (nadir-viewing) to band 3B (back-viewing). Separate values of aerodynamic resistance are then assigned to each land cover type, and energy fluxes over the entire Salar de Atacama are calculated using these spatially distributed aerodynamic resistance values. Results of both energy flux calculation techniques are evaluated at several sites on the playa using ground-based energy flux measurements.

  5. ICP0 dismantles microtubule networks in herpes simplex virus-infected cells.

    Directory of Open Access Journals (Sweden)

    Mingyu Liu

    Full Text Available Infected-cell protein 0 (ICP0 is a RING finger E3 ligase that regulates herpes simplex virus (HSV mRNA synthesis, and strongly influences the balance between latency and replication of HSV. For 25 years, the nuclear functions of ICP0 have been the subject of intense scrutiny. To obtain new clues about ICP0's mechanism of action, we constructed HSV-1 viruses that expressed GFP-tagged ICP0. To our surprise, both GFP-tagged and wild-type ICP0 were predominantly observed in the cytoplasm of HSV-infected cells. Although ICP0 is exclusively nuclear during the immediate-early phase of HSV infection, further analysis revealed that ICP0 translocated to the cytoplasm during the early phase where it triggered a previously unrecognized process; ICP0 dismantled the microtubule network of the host cell. A RING finger mutant of ICP0 efficiently bundled microtubules, but failed to disperse microtubule bundles. Synthesis of ICP0 proved to be necessary and sufficient to disrupt microtubule networks in HSV-infected and transfected cells. Plant and animal viruses encode many proteins that reorganize microtubules. However, this is the first report of a viral E3 ligase that regulates microtubule stability. Intriguingly, several cellular E3 ligases orchestrate microtubule disassembly and reassembly during mitosis. Our results suggest that ICP0 serves a dual role in the HSV life cycle, acting first as a nuclear regulator of viral mRNA synthesis and acting later, in the cytoplasm, to dismantle the host cell's microtubule network in preparation for virion synthesis and/or egress.

  6. Self-Sustained Oscillatory Sliding Movement of Doublet Microtubules and Flagellar Bend Formation

    OpenAIRE

    ISHIJIMA, Sumio

    2016-01-01

    It is well established that the basis for flagellar and ciliary movements is ATP-dependent sliding between adjacent doublet microtubules. However, the mechanism for converting microtubule sliding into flagellar and ciliary movements has long remained unresolved. The author has developed new sperm models that use bull spermatozoa divested of their plasma membrane and midpiece mitochondrial sheath by Triton X-100 and dithiothreitol. These models enable the observation of both the oscillatory sl...

  7. Microtubule cytoskeleton behavior in the initial steps of host cell invasion by Besnoitia besnoiti

    OpenAIRE

    REIS, Y; CORTES, H; VISEUMELO, L; FAZENDEIRO, I; Leitao, A.; SOARES, H

    2006-01-01

    Microtubule cytoskeleton behavior in the initial steps of host cell invasion by Besnoitia besnoiti Besnoitia besnoiti is a protozoan parasite responsible for bovine besnoitiosis. Indirect immunofluorescence showed that isolated B. besnoiti possesses a set of subpellicular microtubules, radiating from the apical end and extending for more than 2/3 of the cell body. Upon interaction with the host cell, B. besnoiti undergoes dramatic modifications of shape and surface, as revealed by atomic ...

  8. Association of mitogen-activated protein kinase with the microtubule cytoskeleton.

    OpenAIRE

    Reszka, A. A.; Seger, R.; Diltz, C D; Krebs, E G; Fischer, E H

    1995-01-01

    Using indirect immunofluorescence microscopy and biochemical techniques, we have determined that approximately one-third of the total mitogen-activated protein kinase (MAPK) is associated with the microtubule cytoskeleton in NIH 3T3 mouse fibroblasts. This population of enzyme can be separated from the soluble form that is found distributed throughout the cytosol and is also present in the nucleus after mitogen stimulation. The microtubule-associated enzyme pool constitutes half of all detect...

  9. Kar3Vik1 uses a minus-end directed powerstroke for movement along microtubules.

    Science.gov (United States)

    Cope, Julia; Rank, Katherine C; Gilbert, Susan P; Rayment, Ivan; Hoenger, Andreas

    2013-01-01

    We have used cryo-electron microscopy (cryo-EM) and helical averaging to examine the 3-D structure of the heterodimeric kinesin-14 Kar3Vik1 complexed to microtubules at a resolution of 2.5 nm. 3-D maps were obtained at key points in Kar3Vik1's nucleotide hydrolysis cycle to gain insight into the mechanism that this motor uses for retrograde motility. In all states where Kar3Vik1 maintained a strong interaction with the microtubule, we found, as observed by cryo-EM, that the motor bound with one head domain while the second head extended outwards. 3-D reconstructions of Kar3Vik1-microtubule complexes revealed that in the nucleotide-free state, the motor's coiled-coil stalk points toward the plus-end of the microtubule. In the ATP-state, the outer head is shown to undergo a large rotation that reorients the stalk ∼75° to point toward the microtubule minus-end. To determine which of the two heads binds to tubulin in each nucleotide state, we employed specific Nanogold®-labeling of Vik1. The resulting maps confirmed that in the nucleotide-free, ATP and ADP+Pi states, Kar3 maintains contact with the microtubule surface, while Vik1 extends away from the microtubule and tracks with the coiled-coil as it rotates towards the microtubule minus-end. While many previous investigations have focused on the mechanisms of homodimeric kinesins, this work presents the first comprehensive study of the powerstroke of a heterodimeric kinesin. The stalk rotation shown here for Kar3Vik1 is highly reminiscent of that reported for the homodimeric kinesin-14 Ncd, emphasizing the conservation of a mechanism for minus-end directed motility. PMID:23342004

  10. Genetic evidence that cellulose synthase activity influences microtubule cortical array organization

    OpenAIRE

    Paredez, A.; S. Persson; Ehrhardt, D; Somerville, C

    2008-01-01

    To identify factors that influence cytoskeletal organization we screened for Arabidopsis ( Arabidopsis thaliana) mutants that show hypersensitivity to the microtubule destabilizing drug oryzalin. We cloned the genes corresponding to two of the 131 mutant lines obtained. The genes encoded mutant alleles of PROCUSTE1 and KORRIGAN, which both encode proteins that have previously been implicated in cellulose synthesis. Analysis of microtubules in the mutants revealed that both mutants have altere...

  11. Microtubule Disruption in Keratinocytes Induces Cell-Cell Adhesion through Activation of Endogenous E-Cadherin

    OpenAIRE

    Kee, Sun-Ho; Steinert, Peter M.

    2001-01-01

    The association of the cytoskeleton with the cadherin–catenin complex is essential for strong cell-cell adhesion in epithelial cells. In this study, we have investigated the effect of microtubule organization on cell-cell adhesion in differentiating keratinocytes. When microtubules of normal human epidermal keratinocytes (NHEKs) grown in low calcium media (0.05 mM) were disrupted with nocodazole or colcemid, cell-cell adhesion was induced through relocalization of the ...

  12. Structural Basis for Induction of Peripheral Neuropathy by Microtubule-Targeting Cancer Drugs.

    Science.gov (United States)

    Smith, Jennifer A; Slusher, Barbara S; Wozniak, Krystyna M; Farah, Mohamed H; Smiyun, Gregoriy; Wilson, Leslie; Feinstein, Stuart; Jordan, Mary Ann

    2016-09-01

    Peripheral neuropathy is a serious, dose-limiting side effect of cancer treatment with microtubule-targeting drugs. Symptoms present in a "stocking-glove" distribution, with longest nerves affected most acutely, suggesting a length-dependent component to the toxicity. Axonal transport of ATP-producing mitochondria along neuronal microtubules from cell body to synapse is crucial to neuronal function. We compared the effects of the drugs paclitaxel and ixabepilone that bind along the lengths of microtubules and the drugs eribulin and vincristine that bind at microtubule ends, on mitochondrial trafficking in cultured human neuronal SK-N-SH cells and on axonal transport in mouse sciatic nerves. Antiproliferative concentrations of paclitaxel and ixabepilone significantly inhibited the anterograde transport velocity of mitochondria in neuronal cells, whereas eribulin and vincristine inhibited transport only at significantly higher concentrations. Confirming these observations, anterogradely transported amyloid precursor protein accumulated in ligated sciatic nerves of control and eribulin-treated mice, but not in paclitaxel-treated mice, indicating that paclitaxel inhibited anterograde axonal transport, whereas eribulin did not. Electron microscopy of sciatic nerves of paclitaxel-treated mice showed reduced organelle accumulation proximal to the ligation consistent with inhibition of anterograde (kinesin based) transport by paclitaxel. In contrast, none of the drugs significantly affected retrograde (dynein based) transport in neuronal cells or mouse nerves. Collectively, these results suggest that paclitaxel and ixabepilone, which bind along the lengths and stabilize microtubules, inhibit kinesin-based axonal transport, but not dynein-based transport, whereas the microtubule-destabilizing drugs, eribulin and vincristine, which bind preferentially to microtubule ends, have significantly less effect on all microtubule-based axonal transport. Cancer Res; 76(17); 5115-23.

  13. Direct visualization of fluorescein-labeled microtubules in vitro and in microinjected fibroblasts

    OpenAIRE

    1981-01-01

    Microtubule proteins and tubulin have been purified from brain and labeled with dichlorotriazinyl fluorescein (DTAF). This procedure compromises neither the polymerizability of the proteins nor their affinities for unlabeled proteins. Within 15 min after microinjection of either DTAF-microtubule proteins or DTAF-tubulin into cultured gerbil fibroma cells, there was an evolution of a fluorescent fibrillar pattern with a distribution similar to that of the microtubular network seen after staini...

  14. Lis1 mediates planar polarity of auditory hair cells through regulation of microtubule organization

    OpenAIRE

    Sipe, Conor W.; Liu, Lixia; Lee, Jianyi; Grimsley-Myers, Cynthia; Lu, Xiaowei

    2013-01-01

    The V-shaped hair bundles atop auditory hair cells and their uniform orientation are manifestations of epithelial planar cell polarity (PCP) required for proper perception of sound. PCP is regulated at the tissue level by a conserved core Wnt/PCP pathway. However, the hair cell-intrinsic polarity machinery is poorly understood. Recent findings implicate hair cell microtubules in planar polarization of hair cells. To elucidate the microtubule-mediated polarity pathway, we analyzed Lis1 functio...

  15. Interactions of the HSV-1 UL25 Capsid Protein with Cellular Microtubule-associated Protein

    Institute of Scientific and Technical Information of China (English)

    Lei GUO; Ying ZHANG; Yan-chun CHE; Wen-juan WU; Wei-zhong LI; Li-chun WANG; Yun LIAO; Long-ding LIU; Qi-han LI

    2008-01-01

    An interaction between the HSV-1 UL25 capsid protein and cellular microtubule-associated protein was found using a yeast two-hybrid screen and β-D-galactosidase activity assays. Immunofluorescence microscopy of the UL25 protein demonstrated its co-localization with cellular microtubule-associated protein in the plasma membrane. Further investigations with deletion mutants suggest that UL25 is likely to have a function in the nucleus.

  16. Katanin maintains meiotic metaphase chromosome alignment and spindle structure in vivo and has multiple effects on microtubules in vitro.

    Science.gov (United States)

    McNally, Karen; Berg, Evan; Cortes, Daniel B; Hernandez, Veronica; Mains, Paul E; McNally, Francis J

    2014-04-01

    Assembly of Caenorhabditis elegans female meiotic spindles requires both MEI-1 and MEI-2 subunits of the microtubule-severing ATPase katanin. Strong loss-of-function mutants assemble apolar intersecting microtubule arrays, whereas weaker mutants assemble bipolar meiotic spindles that are longer than wild type. To determine whether katanin is also required for spindle maintenance, we monitored metaphase I spindles after a fast-acting mei-1(ts) mutant was shifted to a nonpermissive temperature. Within 4 min of temperature shift, bivalents moved off the metaphase plate, and microtubule bundles within the spindle lengthened and developed a high degree of curvature. Spindles eventually lost bipolar structure. Immunofluorescence of embryos fixed at increasing temperature indicated that MEI-1 was lost from spindle microtubules before loss of ASPM-1, indicating that MEI-1 and ASPM-1 act independently at spindle poles. We quantified the microtubule-severing activity of purified MEI-1/MEI-2 complexes corresponding to six different point mutations and found a linear relationship between microtubule disassembly rate and meiotic spindle length. Previous work showed that katanin is required for severing at points where two microtubules intersect in vivo. We show that purified MEI-1/MEI-2 complexes preferentially sever at intersections between two microtubules and directly bundle microtubules in vitro. These activities could promote parallel/antiparallel microtubule organization in meiotic spindles. PMID:24501424

  17. HYS-32-Induced Microtubule Catastrophes in Rat Astrocytes Involves the PI3K-GSK3beta Signaling Pathway.

    Science.gov (United States)

    Chiu, Chi-Ting; Liao, Chih-Kai; Shen, Chien-Chang; Tang, Tswen-Kei; Jow, Guey-Mei; Wang, Hwai-Shi; Wu, Jiahn-Chun

    2015-01-01

    HYS-32 is a novel derivative of combretastatin-A4 (CA-4) previously shown to induce microtubule coiling in rat primary astrocytes. In this study, we further investigated the signaling mechanism and EB1, a microtubule-associated end binding protein, involved in HYS-32-induced microtubule catastrophes. Confocal microscopy with double immunofluorescence staining revealed that EB1 accumulates at the growing microtubule plus ends, where they exhibit a bright comet-like staining pattern in control astrocytes. HYS-32 induced microtubule catastrophes in both a dose- and time-dependent manner and dramatically increased the distances between microtubule tips and the cell border. Treatment of HYS-32 (5 μM) eliminated EB1 localization at the microtubule plus ends and resulted in an extensive redistribution of EB1 to the microtubule lattice without affecting the β-tubulin or EB1 protein expression. Time-lapse experiments with immunoprecipitation further displayed that the association between EB-1 and β-tubulin was significantly decreased following a short-term treatment (2 h), but gradually increased in a prolonged treatment (6-24 h) with HYS-32. Further, HYS-32 treatment induced GSK3β phosphorylation at Y216 and S9, where the ratio of GSK3β-pY216 to GSK3β-pS9 was first elevated followed by a decrease over time. Co-treatment of astrocytes with HYS-32 and GSK3β inhibitor SB415286 attenuated the HYS-32-induced microtubule catastrophes and partially prevented EB1 dissociation from the plus end of microtubules. Furthermore, co-treatment with PI3K inhibitor LY294002 inhibited HYS-32-induced GSK3β-pS9 and partially restored EB1 distribution from the microtubule lattice to plus ends. Together these findings suggest that HYS-32 induces microtubule catastrophes by preventing EB1 from targeting to microtubule plus ends through the GSK3β signaling pathway. PMID:25938237

  18. ASTER Observations of 2000-2007 Thermal Features at Pavlof Volcano and Mt. Hague (Emmons Lake Volcanic Center), Alaska

    Science.gov (United States)

    Wessels, R. L.; Schneider, D.; Ramsey, M.; Mangan, M. T.

    2007-12-01

    Emmons Lake Volcanic Center (ELVC) is a 15 km by 30 km area of nested calderas, stratovolcanoes, lava domes, hyaloclastite rings, and cinder cones aligned along the arc axis. Pavlof Volcano is the most active volcano along the ELVC, with more than 40 historic eruptions since 1790. The most recent eruption of Pavlof Volcano began in August 2007 after almost 11 years of quiescence. Mount Hague is a prominent intracaldera vent with no known historical eruptions that lies approximately 7 kilometers to the southwest of Pavlof. The southern crater of Mount Hague commonly fluctuates between a crater-filling lake to a dry crater floor with vigorously steaming fumaroles. Mount Hague has another fumarole field on the southeast flank at nearly the same elevation as the crater floor. To better document the behavior of persistent thermal features at these remote volcanoes, we have compiled temperature and dimension data using a seven-year long time series of satellite data. Over 25 daytime and 40 nighttime clear thermal infrared (TIR) images (90 m resolution) from the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) have recorded variations in the thermal activity at both volcanic vents since July 2000. All cloud-free ASTER TIR observations document persistent low- temperature features at both Pavlof Volcano and Mount Hague during this period. The size and temperature of each thermal feature varies throughout the study period. The data show that the 2518 m summit of Pavlof Volcano is occasionally snow-free in early summer whereas neighboring peaks at lower elevations are still snow-clad. FLIR data acquired near the summit of Pavlof in 2004 show that the majority of warm ground was at 20°C to 40°C. These warm areas commonly persist snow-free into the winter. Temperature variations observed at Mt Hague crater usually correlate to the size of the ephemeral crater lake. As the lake grows, the pixel-integrated ASTER TIR temperature increases. Measurements

  19. Clasificación de yeso mediante imágenes ASTER en la Cordillera Principal Mendocina

    OpenAIRE

    José F Mescua

    2010-01-01

    Se presenta una metodología para obtener el mapa de distribución de yeso con imágenes satelitales ASTER. Se utilizaron imágenes con nivel de procesamiento ASTERL3A correspondientes a dos áreas de la Cordillera Principal mendocina. La estratigrafía de las áreas de estudio se encuentra compuesta por una espesa sucesión sedimentaria mesozoica, volcanitas cenozoicas y depósitos cuaternarios. Dentro de los depósitos mesozoicos se encuentra la Formación Auquilco, integrada por yeso y anhidrita. El ...

  20. ATPase Cycle of the Nonmotile Kinesin NOD Allows Microtubule End Tracking and Drives Chromosome Movement

    Energy Technology Data Exchange (ETDEWEB)

    Cochran, J.; Sindelar, C; Mulko, N; Collins, K; Kong, S; Hawley, R; Kull, F

    2009-01-01

    Segregation of nonexchange chromosomes during Drosophila melanogaster meiosis requires the proper function of NOD, a nonmotile kinesin-10. We have determined the X-ray crystal structure of the NOD catalytic domain in the ADP- and AMPPNP-bound states. These structures reveal an alternate conformation of the microtubule binding region as well as a nucleotide-sensitive relay of hydrogen bonds at the active site. Additionally, a cryo-electron microscopy reconstruction of the nucleotide-free microtubule-NOD complex shows an atypical binding orientation. Thermodynamic studies show that NOD binds tightly to microtubules in the nucleotide-free state, yet other nucleotide states, including AMPPNP, are weakened. Our pre-steady-state kinetic analysis demonstrates that NOD interaction with microtubules occurs slowly with weak activation of ADP product release. Upon rapid substrate binding, NOD detaches from the microtubule prior to the rate-limiting step of ATP hydrolysis, which is also atypical for a kinesin. We propose a model for NOD's microtubule plus-end tracking that drives chromosome movement.

  1. Emerging roles for microtubules in angiosperm pollen tube growth highlight new research cues

    Directory of Open Access Journals (Sweden)

    Alessandra eMoscatelli

    2015-02-01

    Full Text Available In plants, actin filaments have an important role in organelle movement and cytoplasmic streaming. Otherwise microtubules have a role in restricting organelles to specific areas of the cell and in maintaining organelle morphology. In somatic plant cells, microtubules also participate in cell division and morphogenesis, allowing cells to take their definitive shape in order to perform specific functions. In the latter case, microtubules influence assembly of the cell wall, controlling the delivery of enzymes involved in cellulose synthesis and of wall modulation material to the proper sites.In angiosperm pollen tubes, organelle movement is generally attributed to the acto-myosin system, the main role of which is in distributing organelles in the cytoplasm and in carrying secretory vesicles to the apex for polarized growth. Recent data on membrane trafficking suggests a role of microtubules in fine delivery and repositioning of vesicles to sustain pollen tube growth. This review examines the role of microtubules in secretion and endocytosis, highlighting new research cues regarding cell wall construction and pollen tube-pistil crosstalk, that help unravel the role of microtubules in polarized growth.

  2. A mitotic SKAP isoform regulates spindle positioning at astral microtubule plus ends.

    Science.gov (United States)

    Kern, David M; Nicholls, Peter K; Page, David C; Cheeseman, Iain M

    2016-05-01

    The Astrin/SKAP complex plays important roles in mitotic chromosome alignment and centrosome integrity, but previous work found conflicting results for SKAP function. Here, we demonstrate that SKAP is expressed as two distinct isoforms in mammals: a longer, testis-specific isoform that was used for the previous studies in mitotic cells and a novel, shorter mitotic isoform. Unlike the long isoform, short SKAP rescues SKAP depletion in mitosis and displays robust microtubule plus-end tracking, including localization to astral microtubules. Eliminating SKAP microtubule binding results in severe chromosome segregation defects. In contrast, SKAP mutants specifically defective for plus-end tracking facilitate proper chromosome segregation but display spindle positioning defects. Cells lacking SKAP plus-end tracking have reduced Clasp1 localization at microtubule plus ends and display increased lateral microtubule contacts with the cell cortex, which we propose results in unbalanced dynein-dependent cortical pulling forces. Our work reveals an unappreciated role for the Astrin/SKAP complex as an astral microtubule mediator of mitotic spindle positioning. PMID:27138257

  3. Human EML4, a novel member of the EMAP family, is essential for microtubule formation

    International Nuclear Information System (INIS)

    Human EML4 (EMAP-like protein 4) is a novel microtubule-associated WD-repeat protein of 120 kDa molecular weight, which is classified as belonging to the conserved family of EMAP-like proteins. Cosedimentation assays demonstrated that EML4 associates with in vitro polymerized microtubules. Correspondingly, immunofluorescence stainings and transient expression of EGFP-labeled EML4 revealed a complete colocalization of EML4 with the interphase microtubule array of HeLa cells. We present evidence that the amino-terminal portion of EML4 (amino acids 1-249) is essential for the association with microtubules. Immunoprecipitation experiments revealed that EML4 is hyperphosphorylated on serine/threonine residues during mitosis. In addition, immunofluorescence stainings demonstrated that hyperphosphorylated EML4 is associated with the mitotic spindle, suggesting that the function of EML4 is regulated by phosphorylation. siRNA-mediated knockdown of EML4 in HeLa cells led to a significant decrease in the number of cells. In no case mitotic figures could be observed in EML4 negative HeLa cells. Additionally, we observed a significant reduction of the proliferation rate and the uptake of radioactive [3H]-thymidine as a result of EML4 silencing. Most importantly, EML4 negative cells showed a completely modified microtubule network, indicating that EML4 is necessary for correct microtubule formation

  4. Hypothesis: NDL Proteins Function in Stress Responses by Regulating Microtubule Organization

    Directory of Open Access Journals (Sweden)

    Nisha eKhatri

    2015-10-01

    Full Text Available N-MYC DOWNREGULATED-LIKE proteins (NDL, members of the alpha/beta hydrolase superfamily were recently rediscovered as interactors of G-protein signaling in Arabidopsis thaliana. Although the precise molecular function of NDL proteins is still elusive, in animals these proteins play protective role in hypoxia and expression is induced by hypoxia and nickel, indicating role in stress. Homology of NDL1 with animal counterpart NDRG suggests similar functions in animals and plants. It is well established that stress responses leads to the microtubule depolymerization and reorganization which is crucial for stress tolerance. NDRG is a microtubule-associated protein (MAP which mediates the microtubule organization in animals by causing acetylation and increases the stability of α-tubulin. As NDL1 is highly homologous to NDRG, involvement of NDL1 in the microtubule organization during plant stress can also be expected. Discovery of interaction of NDL with protein kinesin light chain- related 1, enodomembrane family protein 70, syntaxin-23, tubulin alpha-2 chain, as a part of G protein interactome initiative encourages us to postulate microtubule stabilizing functions for NDL family in plants. Our search for NDL interactors in G protein interactome also predicts the role of NDL proteins in abiotic stress tolerance management. Based on published report in animals and predicted interacting partners for NDL in G protein interactome lead us to hypothesize involvement of NDL in the microtubule organization during abiotic stress management in plants.

  5. Microtubule-Destabilizing Agents: Structural and Mechanistic Insights from the Interaction of Colchicine and Vinblastine with Tubulin

    Science.gov (United States)

    Gigant, B.; Cormier, A.; Dorléans, A.; Ravelli, R. B. G.; Knossow, M.

    Microtubules (MTs) are dynamic structures of the eukaryotic cytoskeleton that, during cell division, form the mitotic spindle. Perturbing them leads to mitotic arrest and ultimately to cell death. Consistently, MTs and their building block, αβ tubulin, are one of the best characterized targets in anti-cancer chemotherapy. Drugs that interfere with MTs either stabilize or destabilize them. The latter class is the subject of this review. These ligands bind to the colchicine site or to the vinca domain, two distinct sites located at a distance from each other on tubulin. Nevertheless the effects of both classes of ligands share a common theme, they prevent the formation of MT specific contacts, therefore triggering their disassembly.

  6. The Penetration Depth Derived from the Synthesis of ALOS/PALSAR InSAR Data and ASTER GDEM for the Mapping of Forest Biomass

    Directory of Open Access Journals (Sweden)

    Wenjian Ni

    2014-08-01

    Full Text Available The Global Digital Elevation Model produced from stereo images of Advanced Spaceborne Thermal Emission and Reflection Radiometer data (ASTER GDEM covers land surfaces between latitudes of 83°N and 83°S. The Phased Array type L-band Synthetic Aperture Radar (PALSAR onboard Advanced Land Observing Satellite (ALOS collected many SAR images since it was launched on 24 January 2006. The combination of ALOS/PALSAR interferometric data and ASTER GDEM should provide the penetration depth of SAR data assuming ASTER GDEM was the elevation of vegetation canopy top. It would be correlated with forest biomass because penetration depth could be affected by forest density and forest canopy height. Their combination held great promises for the forest biomass mapping over large area. The feasibility of forest biomass mapping through the data synthesis of ALOS/PALSAR InSAR data and ASTER GDEM was investigated in this study. A procedure for the extraction of penetration depth was firstly proposed. Then three models were built for biomass estimation: (I model only using backscattering coefficients of ALOS/PALSAR data; (II model only using penetration depth; (III model using both of them. The biomass estimated from Lidar data was taken as reference data to evaluate the three different models. The results showed that the combination of backscattering coefficients and penetration depth gave the best accuracy. The forest disturbance has to be considered in forest biomass estimation because of the long time span of ASTER data for generating ASTER GDEM. The spatial homogeneity could be used to improve estimation accuracy.

  7. Dispersion relations of cytoskeleton dynamics

    Directory of Open Access Journals (Sweden)

    Wang R

    2016-01-01

    Full Text Available Ru Wang,1,2 Lei Lei,3 Shamira Sridharan,1,3 Yingxiao Wang,3 Alex J Levine,4,5 Gabriel Popescu,1,3,6 1Quantitative Light Imaging Laboratory, Beckman Institute for Advanced Science and Technology, 2Department of Mechanical Science and Engineering, 3Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, 4Department of Chemistry and Biochemistry, 5Department of Physics and Astronomy, University of California, Los Angeles, CA, 6Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA Abstract: While it is well known that the cytoskeleton plays a fundamental role in maintaining cell shape, performing cell division, and intracellular transport, its spatiotemporal dynamics are insufficiently understood. The dispersion relation, which is fundamental for understanding the connection between spatial and temporal scales of a dynamic system, was employed here for the first time to study the activity of actin and microtubules. Using green fluorescence protein for time-lapse imaging of the cytoskeleton, we showed that the dispersion relation can distinguish between diffusive and active transport of actin and microtubule filaments. Our analysis revealed that along the filaments, the transport was deterministic, as one might expect as the result of the active polymerization process, while across the filaments diffusion was dominant. Furthermore, using drugs to block the polymerization–depolymerization of both actin and microtubules, we measured that the transport immediately became diffusive, as expected. However, unexpectedly, our results indicated that within a few minutes from blocking its polymerization, actin recovered an active transport component. This deterministic component vanished upon treatment with nocodazole, indicating that fragments of actin were actively transported along microtubules. Because it provides information over broad temporal and spatial scales

  8. 天睿子公司Aster Data的专利技术打开大数据商机大门

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    中国,北京—全球最大、专注于数据仓库,大数据分析和整合营销管理解决方案的厂商Teradata天睿公司(Teradata Corporation,美国纽约证券交易所交易代码:TDC)的子公司Aster Data日前宣布,其SQL—Map Reduce技术获得了美国第7966340号专利。Teradata天睿公司于今年四月收购了Aster Data公司。

  9. Characterization of gold nanoparticle binding to microtubule filaments

    International Nuclear Information System (INIS)

    Microtubule (MT) protein filaments were used as templates for fabricating Au nanowires as a bottom-up approach for fabricating building blocks for future integrated circuits. Photochemical reduction methods were employed to form Au nanoparticles which bind and uniformly cover the MT filaments. Synthesis of the MT-templated Au nanowires was characterized using UV/vis spectroscopy and transmission electron microscopy (TEM). In addition, binding between the MT filaments and Au nanoparticles was investigated using surface enhanced Raman spectroscopy (SERS) and X-ray photoelectron spectroscopy (XPS) to establish the nature of the binding sites. A variety of functional groups were identified by SERS to interact with the Au including imidazole, sulfur, aromatic rings, amine, and carboxylate. The imidazole ring in the histidine is the most prominent functional group for Au binding. The results from these studies provide better understanding of the binding between Au and the biotemplate and give insight concerning methods to improve Au coverage for MT-templated Au nanowires.

  10. The rise and fall of the phragmoplast microtubule array.

    Science.gov (United States)

    Lee, Yuh-Ru Julie; Liu, Bo

    2013-12-01

    The cytokinetic apparatus, the phragmoplast, contains a bipolar microtubule (MT) framework that has the MT plus ends concentrated at or near the division site. This anti-parallel MT array provides tracks for the transport of Golgi-derived vesicles toward the plus ends so that materials enclosed are subsequently deposited at the division site. Here we will discuss a proposed model of the centrifugal expansion of the phragmoplast that takes place concomitantly with the assembly of the cell plate, the ultimate product of vesicle fusion. The expansion is a result of continuous MT assembly at the phragmoplast periphery while the MTs toward the center of the phragmoplast are disassembled. These events are the result of MT-dependent MT polymerization, bundling of anti-parallel MTs coming from opposite sides of the division plane that occurs selectively at the phragmoplast periphery, positioning of the plus ends of cross-linked MTs at or near the division site by establishing a minimal MT-overlapping zone, and debundling of anti-parallel MTs that is triggered by phosphorylation of MT-associated proteins. The debundled MTs are disassembled at last by factors including the MT severing enzyme katanin. PMID:24172707

  11. Proper symmetric and asymmetric endoplasmic reticulum partitioning requires astral microtubules.

    Science.gov (United States)

    Smyth, Jeremy T; Schoborg, Todd A; Bergman, Zane J; Riggs, Blake; Rusan, Nasser M

    2015-08-01

    Mechanisms that regulate partitioning of the endoplasmic reticulum (ER) during cell division are largely unknown. Previous studies have mostly addressed ER partitioning in cultured cells, which may not recapitulate physiological processes that are critical in developing, intact tissues. We have addressed this by analysing ER partitioning in asymmetrically dividing stem cells, in which precise segregation of cellular components is essential for proper development and tissue architecture. We show that in Drosophila neural stem cells, called neuroblasts, the ER asymmetrically partitioned to centrosomes early in mitosis. This correlated closely with the asymmetric nucleation of astral microtubules (MTs) by centrosomes, suggesting that astral MT association may be required for ER partitioning by centrosomes. Consistent with this, the ER also associated with astral MTs in meiotic Drosophila spermatocytes and during syncytial embryonic divisions. Disruption of centrosomes in each of these cell types led to improper ER partitioning, demonstrating the critical role for centrosomes and associated astral MTs in this process. Importantly, we show that the ER also associated with astral MTs in cultured human cells, suggesting that this centrosome/astral MT-based partitioning mechanism is conserved across animal species. PMID:26289801

  12. Microtubule length dependence of motor traffic in cells

    CERN Document Server

    Zhang, Yunxin

    2012-01-01

    In living cells, motor proteins, such as kinesin and dynein can move processively along microtubule (MT), and also detach from or attach to MT stochastically. Experiments have found that, the traffic of motor might be jammed, and various theoretical models have been designed to understand this traffic jam phenomenon. But previous studies mainly focus on motor attachment/detachment rate dependent properties. Recent experiment of Leduc {\\it et al.} found that the traffic jam formation of motor protein kinesin depends also on the length of MT [Proc. Natl. Acad. Sci. U.S.A. {\\bf 109}, 6100-6105 (2012)]. In this study, the MT length dependent properties of motor traffic will be analyzed. We found that MT length has one {\\it critical value} $N_c$, traffic jam occurs only when MT length $N>N_c$. The jammed length of MT increases with total MT length, while the non-jammed MT length might not change monotonically with the total MT length. The critical value $N_c$ increases with motor detachment rate from MT, but decre...

  13. Toxicity and interaction of titanium dioxide nanoparticles with microtubule protein

    Institute of Scientific and Technical Information of China (English)

    Zahra Naghdi Gheshlaghi; Gholam Hossein Riazi; Shahin Ahmadian; Mahmoud Ghafari; Roya Mahinpour

    2008-01-01

    Titanium dioxide (TiO2) nanoparticles (NPs) are widely used in several manufactured products. The small size of NPs facilitates their uptake into cells as well as transcytosis across epithelial cells into blood and lymph circulation to reach different sites, such as the central nervous system. Different studies have shown the risks that TiO2 NPs in the neuronal system and other organs present. As membranebound layer aggregates or single particles, TiO2 NPs can enter not only cells, but also mitochondria and nuclei.Therefore these particles can interact with cytoplasmic proteins such as microtubules (MTs). MTs are cytoskeletal proteins that are essential in eukaryotic cells for a variety of functions, such as cellular transport, cell motility and mitosis. MTs in neurons are used to transport substances such as neurotransmitters. Single TiO2 NPs in cytoplasm can interact with these proteins and affect their crucial functions in different tissues. In this study, we showed the effects of TiO2 NPs on MT polymerization and structure using ultraviolet spectrophotometer and fluorometry. The fluorescent spectroscopy showed a significant tubulin conformational change in the presence of TiO2 NPs and the ultraviolet spectroscopy results showed that TiO2 NPs affect tubulin polymerization and decrease it. The aim of this study was to find the potential risks that TiO2 NPs pose to human organs and cells.

  14. Calmodulin immunolocalization to cortical microtubules is calcium independent

    Energy Technology Data Exchange (ETDEWEB)

    Fisher, D.D.; Cyr, R.J.

    1992-01-01

    Calcium affects the stability of cortical microtubules (MTs) in lysed protoplasts. This calmodulin (CaM)-mediated interaction may provide a mechanism that serves to integrate cellular behavior with MT function. To test the hypothesis that CaM associates with these MTs, monoclonal antibodies were produced against CaM, and one (designated mAb1D10), was selected for its suitability as an immunocytochemical reagent. It is shown that CaM associates with the cortical Mats of cultured carrot (Daucus carota L.) and tobacco (Nicotiana tobacum L.) cells. Inasmuch as CaM interacts with calcium and affects the behavior of these Mats, we hypothesized that calcium would alter this association. To test this, protoplasts containing taxol-stabilized Mats were lysed in the presence of various concentrations of calcium and examined for the association of Cam with cortical Mats. At 1 [mu]M calcium, many protoplasts did not have CaM in association with the cortical Mats, while at 3.6 [mu]M calcium, this association was completely abolished. The results are discussed in terms of a model in which CaM associates with Mats via two types of interactions; one calcium dependent and one independent.

  15. Calmodulin immunolocalization to cortical microtubules is calcium independent

    Energy Technology Data Exchange (ETDEWEB)

    Fisher, D.D.; Cyr, R.J.

    1992-12-31

    Calcium affects the stability of cortical microtubules (MTs) in lysed protoplasts. This calmodulin (CaM)-mediated interaction may provide a mechanism that serves to integrate cellular behavior with MT function. To test the hypothesis that CaM associates with these MTs, monoclonal antibodies were produced against CaM, and one (designated mAb1D10), was selected for its suitability as an immunocytochemical reagent. It is shown that CaM associates with the cortical Mats of cultured carrot (Daucus carota L.) and tobacco (Nicotiana tobacum L.) cells. Inasmuch as CaM interacts with calcium and affects the behavior of these Mats, we hypothesized that calcium would alter this association. To test this, protoplasts containing taxol-stabilized Mats were lysed in the presence of various concentrations of calcium and examined for the association of Cam with cortical Mats. At 1 {mu}M calcium, many protoplasts did not have CaM in association with the cortical Mats, while at 3.6 {mu}M calcium, this association was completely abolished. The results are discussed in terms of a model in which CaM associates with Mats via two types of interactions; one calcium dependent and one independent.

  16. Cortical microtubule patterning in roots of Arabidopsis thaliana primary cell wall mutants reveals the bidirectional interplay with cell expansion.

    Science.gov (United States)

    Panteris, Emmanuel; Adamakis, Ioannis-Dimosthenis S; Daras, Gerasimos; Rigas, Stamatis

    2015-01-01

    Cell elongation requires directional deposition of cellulose microfibrils regulated by transverse cortical microtubules. Microtubules respond differentially to suppression of cell elongation along the developmental zones of Arabidopsis thaliana root apex. Cortical microtubule orientation is particularly affected in the fast elongation zone but not in the meristematic or transition zones of thanatos and pom2-4 cellulose-deficient mutants of Arabidopsis thaliana. Here, we report that a uniform phenotype is established among the primary cell wall mutants, as cortical microtubules of root epidermal cells of rsw1 and prc1 mutants exhibit the same pattern described in thanatos and pom2-4. Whether cortical microtubules assume transverse orientation or not is determined by the demand for cellulose synthesis, according to each root zone's expansion rate. It is suggested that cessation of cell expansion may provide a biophysical signal resulting in microtubule reorientation. PMID:26042727

  17. Digital Mapping of Soil Drainage Classes Using Multitemporal RADARSAT-1 and ASTER Images and Soil Survey Data

    Directory of Open Access Journals (Sweden)

    Mohamed Abou Niang

    2012-01-01

    Full Text Available Discriminant analysis classification (DAC and decision tree classifiers (DTC were used for digital mapping of soil drainage in the Bras-d’Henri watershed (QC, Canada using earth observation data (RADARSAT-1 and ASTER and soil survey dataset. Firstly, a forward stepwise selection was applied to each land use type identified by ASTER image in order to derive an optimal subset of soil drainage class predictors. The classification models were then applied to these subsets for each land use and merged to obtain a digital soil drainage map for the whole watershed. The DTC method provided better classification accuracies (29 to 92% than the DAC method (33 to 79% according to the land use type. A similarity measure (S was used to compare the best digital soil drainage map (DTC to the conventional soil drainage map. Medium to high similarities (0.6≤S<0.9 were observed for 83% (187 km2 of the study area while 3% of the study area showed very good agreement (S≥0.9. Few soil polygons showed very weak similarities (S<0.3. This study demonstrates the efficiency of combining radar and optical remote sensing data with a representative soil dataset for producing digital maps of soil drainage.

  18. The plant formin AtFH4 interacts with both actin and microtubules, and contains a newly identified microtubule-binding domain

    Czech Academy of Sciences Publication Activity Database

    Deeks, M.J.; Fendrych, Matyáš; Smertenko, A.; Bell, K.S.; Oparka, K.; Cvrčková, F.; Žárský, Viktor; Hussey, P.J.

    2010-01-01

    Roč. 123, č. 8 (2010), s. 1209-1215. ISSN 0021-9533 R&D Projects: GA MŠk(CZ) LC06004; GA ČR GAP305/10/0433 Institutional research plan: CEZ:AV0Z50380511 Keywords : Actin regulating proteins * Membrane * Microtubule Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 6.290, year: 2010

  19. Evolution of a domain conserved in microtubule-associated proteins of eukaryotes

    Directory of Open Access Journals (Sweden)

    Alex S Rajangam

    2008-09-01

    Full Text Available Alex S Rajangam1, Hongqian Yang2, Tuula T Teeri1, Lars Arvestad21KTH Biotechnology, Swedish Center for Biomimetic Fiber Engineering, AlbaNova, Stockholm, Sweden; 2Stockholm Bioinformatics Center and School of Computer Science and Communication, Royal Institute of Technology, AlbaNova, Stockholm, SwedenAbstract: The microtubule network, the major organelle of the eukaryotic cytoskeleton, is involved in cell division and differentiation but also with many other cellular functions. In plants, microtubules seem to be involved in the ordered deposition of cellulose microfibrils by a so far unknown mechanism. Microtubule-associated proteins (MAP typically contain various domains targeting or binding proteins with different functions to microtubules. Here we have investigated a proposed microtubule-targeting domain, TPX2, first identified in the Kinesin-like protein 2 in Xenopus. A TPX2 containing microtubule binding protein, PttMAP20, has been recently identified in poplar tissues undergoing xylogenesis. Furthermore, the herbicide 2,6-dichlorobenzonitrile (DCB, which is a known inhibitor of cellulose synthesis, was shown to bind specifically to PttMAP20. It is thus possible that PttMAP20 may have a role in coupling cellulose biosynthesis and the microtubular networks in poplar secondary cell walls. In order to get more insight into the occurrence, evolution and potential functions of TPX2-containing proteins we have carried out bioinformatic analysis for all genes so far found to encode TPX2 domains with special reference to poplar PttMAP20 and its putative orthologs in other plants.Keywords: TPX2 domain, MAP20, evolution, microtubule, cellulose, bioinformatics

  20. Cep192 controls the balance of centrosome and non-centrosomal microtubules during interphase.

    Directory of Open Access Journals (Sweden)

    Brian P O'Rourke

    Full Text Available Cep192 is a centrosomal protein that contributes to the formation and function of the mitotic spindle in mammalian cells. Cep192's mitotic activities stem largely from its role in the recruitment to the centrosome of numerous additional proteins such as gamma-tubulin and Pericentrin. Here, we examine Cep192's function in interphase cells. Our data indicate that, as in mitosis, Cep192 stimulates the nucleation of centrosomal microtubules thereby regulating the morphology of interphase microtubule arrays. Interestingly, however, cells lacking Cep192 remain capable of generating normal levels of MTs as the loss of centrosomal microtubules is augmented by MT nucleation from other sites, most notably the Golgi apparatus. The depletion of Cep192 results in a significant decrease in the level of centrosome-associated gamma-tubulin, likely explaining its impact on centrosome microtubule nucleation. However, in stark contrast to mitosis, Cep192 appears to maintain an antagonistic relationship with Pericentrin at interphase centrosomes. Interphase cells depleted of Cep192 display significantly higher levels of centrosome-associated Pericentrin while overexpression of Cep192 reduces the levels of centrosomal Pericentrin. Conversely, depletion of Pericentrin results in elevated levels of centrosomal Cep192 and enhances microtubule nucleation at centrosomes, at least during interphase. Finally, we show that depletion of Cep192 negatively impacts cell motility and alters normal cell polarization. Our current working hypothesis is that the microtubule nucleating capacity of the interphase centrosome is determined by an antagonistic balance of Cep192, which promotes nucleation, and Pericentrin, which inhibits nucleation. This in turn determines the relative abundance of centrosomal and non-centrosomal microtubules that tune cell movement and shape.