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Sample records for assimilating assorted acquaintance

  1. VirusPKT: A Search Tool For Assimilating Assorted Acquaintance For Viruses

    Directory of Open Access Journals (Sweden)

    Jayanthi Manicassamy

    2009-11-01

    Full Text Available Viruses utilize various means to circumvent the immune detection in the biological systems. Several mathematical models have been investigated for the description of viral dynamics in the biological system of human and various other species. One common strategy for evasion and recognition of viruses is, through acquaintance in the systems by means of search engines. In this perspective a search tool have been developed to provide a wider comprehension about the structure and other details on viruses which have been narrated in this paper. This provides an adequate knowledge in evolution and building of viruses, its functions through information extraction from various websites. Apart from this, tool aim to automate the activities associated with it in a self-maintainable, self-sustainable, proactive one which has been evaluated through analysis made and have been discussed in this paper.

  2. VirusPKT: A Search Tool For Assimilating Assorted Acquaintance For Viruses

    CERN Document Server

    Manicassamy, Jayanthi

    2009-01-01

    Viruses utilize various means to circumvent the immune detection in the biological systems. Several mathematical models have been investigated for the description of viral dynamics in the biological system of human and various other species. One common strategy for evasion and recognition of viruses is, through acquaintance in the systems by means of search engines. In this perspective a search tool have been developed to provide a wider comprehension about the structure and other details on viruses which have been narrated in this paper. This provides an adequate knowledge in evolution and building of viruses, its functions through information extraction from various websites. Apart from this, tool aim to automate the activities associated with it in a self-maintainable, self-sustainable, proactive one which has been evaluated through analysis made and have been discussed in this paper.

  3. Agent Persuasion Mechanism of Acquaintance

    Science.gov (United States)

    Jinghua, Wu; Wenguang, Lu; Hailiang, Meng

    Agent persuasion can improve negotiation efficiency in dynamic environment based on its initiative and autonomy, and etc., which is being affected much more by acquaintance. Classification of acquaintance on agent persuasion is illustrated, and the agent persuasion model of acquaintance is also illustrated. Then the concept of agent persuasion degree of acquaintance is given. Finally, relative interactive mechanism is elaborated.

  4. How acquainting shows verbally

    DEFF Research Database (Denmark)

    Hermann, Jesper

    2004-01-01

    A central tenet of the integrational view of language and communication is an anchoring in the acting and integrating behaviour of the communicants themselves. In this way the integrational approach has a certain phenomenological slant. What happens when this approach is combined with a ¿psychology...... of linguistic exertion¿ based upon the descriptions of the  stream of thought, and of conception (>acquainting) by William James? Text-examples taken from an internet site for dieters illustrate the combined James'ian & integrational approach in practice. Some of the examples are also specifically related...

  5. Optimizing Retail Assortments

    NARCIS (Netherlands)

    Rooderkerk, Robert P.; van Heerde, Harald J.; Bijmolt, Tammo H. A.

    2013-01-01

    Retailers face the problem of finding the assortment that maximizes category profit. This is a challenging task because the number. of potential assortments is very large when there are many stock-keeping units (SKUs) to choose from. Moreover, SKIT sales can be cannibalized by other SKUs in the asso

  6. Immunity of multiplex networks via acquaintance vaccination

    Science.gov (United States)

    Wang, Zhen; Zhao, Da-Wei; Wang, Lin; Sun, Gui-Quan; Jin, Zhen

    2015-11-01

    How to find the effective approach of immunizing a population is one open question in the research of complex systems. Up to now, there have been a great number of works focusing on the efficiency of various immunization strategies. However, the majority of these existing achievements are limited to isolated networks, how immunization affects disease spreading in multiplex networks seems to need further exploration. In this letter, we explore the impact of the acquaintance immunization in multiplex networks, where two kinds of immunization strategies, multiplex node-based acquaintance immunization and layer node-based acquaintance immunization, are proposed. With the generating function method, our theoretical framework is able to accurately calculate the critical immunization threshold which is one of the most important indexes to predict the epidemic regime. Moreover, we further uncover that, with the increment of degree correlation between network layers, the immunization threshold declines for multiplex node-based acquaintance immunization, but slowly increases for layer node-based acquaintance immunization.

  7. Japanese International Students' Attitudes toward Acquaintance Rape.

    Science.gov (United States)

    Motoike, Janice; Stockdale, Margaret

    This study looked at the influence of an Asian sociocultural variable, loss of face or social integrity, as a predictor of perceptions of acquaintance rape among Japanese students. In addition to the expected associations between gender, sexism, and perceptions of rape, loss of face was predicted to interact with the perpetrator's reference group…

  8. Chromosome assortment in Saccharum.

    Science.gov (United States)

    Al-Janabi, S M; Honeycutt, R J; Sobral, B W

    1994-12-01

    Recent work has revealed random chromosome pairing and assortment in Saccharum spontaneum L., the most widely distributed, and morphologically and cytologically variable of the species of Saccharum. This conclusion was based on the analysis of a segregating population from across between S. spontaneum 'SES 208' and a spontaneously-doubled haploid of itself, derived from anther culture. To determine whether polysomic inheritance is common in Saccharum and whether it is observed in a typical biparental cross, we studied chromosome pairing and assortment in 44 progeny of a cross between euploid, meiotically regular, 2n=80 forms of Saccharum officinarum 'LA Purple' and Saccharum robustum ' Mol 5829'. Papuan 2n=80 forms of S. robustum have been suggested as the immediate progenitor species for cultivated sugarcane (S. officinarum). A total of 738 loci in LA Purple and 720 loci in Mol 5829 were amplified and typed in the progeny by arbitrarily primed PCR using 45 primers. Fifty and 33 single-dose polymorphisms were identified in the S. officinarum and S. robustum genomes, respectively (χ 2 at 98%). Linkage analysis of single-dose polymorphisms in both genomes revealed linkages in repulsion and coupling phases. In the S. officinarum genome, a map hypothesis gave 7 linkage groups with 17 linked and 33 unlinked markers. Four of 13 pairwise linkages were in repulsion phase and 9 were in coupling phase. In the S. robustum genome, a map hypothesis gave 5 linkage groups, defined by 12 markers, with 21 markers unlinked, and 2 of 9 pairwise linkages were in repulsion phase. Therefore, complete polysomic inheritance was not observed in either species, suggesting that chromosomal behavior is different from that observed by linkage analysis of over 500 markers in the S. spontaneum map. Implications of this finding for evolution and breeding are discussed.

  9. More choice is better : Effects of assortment size and composition on assortment evaluations

    NARCIS (Netherlands)

    Koelemeijer, K.; Oppewal, H.

    2005-01-01

    This study focuses on effects of assortment size and composition on assortment evaluation. Data from a choice experiment conducted with members of a large consumer panel suggest that adding any item improves assortment evaluation, regardless of their attributes or the size of the assortment. Althoug

  10. Assortment Variety : Attribute versus Product-Based

    NARCIS (Netherlands)

    van Herpen, H.W.I.; Pieters, R.

    2000-01-01

    Retailers need to decide on the content and structure of their product assortments, and thereby on the degree of variety that they offer to their customers.This paper compares measures of assortment variety and relates them to underlying variety components.We conceptualize assortment variety from a

  11. Modeling acquaintance networks based on balance theory

    Directory of Open Access Journals (Sweden)

    Vukašinović Vida

    2014-09-01

    Full Text Available An acquaintance network is a social structure made up of a set of actors and the ties between them. These ties change dynamically as a consequence of incessant interactions between the actors. In this paper we introduce a social network model called the Interaction-Based (IB model that involves well-known sociological principles. The connections between the actors and the strength of the connections are influenced by the continuous positive and negative interactions between the actors and, vice versa, the future interactions are more likely to happen between the actors that are connected with stronger ties. The model is also inspired by the social behavior of animal species, particularly that of ants in their colony. A model evaluation showed that the IB model turned out to be sparse. The model has a small diameter and an average path length that grows in proportion to the logarithm of the number of vertices. The clustering coefficient is relatively high, and its value stabilizes in larger networks. The degree distributions are slightly right-skewed. In the mature phase of the IB model, i.e., when the number of edges does not change significantly, most of the network properties do not change significantly either. The IB model was found to be the best of all the compared models in simulating the e-mail URV (University Rovira i Virgili of Tarragona network because the properties of the IB model more closely matched those of the e-mail URV network than the other models

  12. Multi-Agent Information Classification Using Dynamic Acquaintance Lists.

    Science.gov (United States)

    Mukhopadhyay, Snehasis; Peng, Shengquan; Raje, Rajeev; Palakal, Mathew; Mostafa, Javed

    2003-01-01

    Discussion of automated information services focuses on information classification and collaborative agents, i.e. intelligent computer programs. Highlights include multi-agent systems; distributed artificial intelligence; thesauri; document representation and classification; agent modeling; acquaintances, or remote agents discovered through…

  13. Product assortment and individual decision processes.

    Science.gov (United States)

    Chernev, Alexander

    2003-07-01

    Research presented in this article examines the impact of product assortment on individuals' decisions. Four experiments report converging evidence that the impact of assortment is moderated by the degree to which individuals have articulated attribute preferences, whereby individuals with an articulated ideal point are more likely to prefer larger assortments than individuals without articulated preferences. The data further show that choices made from large assortments are associated with more selective, alternative-based, and confirmatory processing for individuals with articulated preferences and more comprehensive, attribute-based, and comparative processing for those without articulated preferences.

  14. Understanding Consumer Reactions to Assortment Unavailability

    NARCIS (Netherlands)

    L.M. Sloot (Laurens)

    2006-01-01

    textabstractAny regular grocery shopper will be familiar with the annoying situation in which his or her preferred product is not available at the moment (s) he wants to buy it. Assortment unavailability can be temporary (e.g., out-of-stock) or permanent in nature (e.g., assortment reduction). Shop

  15. Perceptions and evaluations of assortment variety

    NARCIS (Netherlands)

    van Herpen, H.W.I.

    2001-01-01

    Given the explosive growth in the number of products, managing their assortments is a challenging task for retailers. An understanding of consumer responses to changes in assortment size and composition is required. This dissertation examines consumers' perceptions and evaluations of product assortm

  16. An Ideal Assortative Network and Synchronization

    Institute of Scientific and Technical Information of China (English)

    DONG Cheng-Dong; LIU Zeng-Rong

    2007-01-01

    This paper proposes a novel complex network with assortative property based on multi-center networks. The average path length and clustering coefficient of the network are calculated, and the impact on the network topology is investigated. A simple dynamic system established on the proposed network is used to analyze how the assortative property of the network affects synchronization.

  17. An improved acquaintance immunization strategy for complex network.

    Science.gov (United States)

    Chen, Li; Wang, Dongyi

    2015-11-21

    The acquaintance immunization strategy is a common strategy to suppress epidemic on complex network which achieves a seemingly perfect balance between cost and effectiveness compared with other canonical immunization strategies. However, the acquaintance immunization strategy fails to take the time-varying factor and local information of nodes into consideration, which limits its effectiveness in some specific network topology. Our improved immunization strategy is based on a new mathematical model Network Structure Index (NSI), which digs deep to measure the connection property and surrounding influence of a node's neighbor nodes to better determine the importance of nodes during immunization. Both mathematical derivation and the simulation program tested on various network topology support our idea that this improved acquaintance immunization strategy protects more nodes from infection and immunizes important nodes more efficiently than the original strategies. As to say, our strategy has more adaptability and achieves a more reasonable balanced point between cost and effectiveness.

  18. Assortment of encounters and evolution of cooperativeness.

    Science.gov (United States)

    Eshel, I; Cavalli-Sforza, L L

    1982-02-01

    The method of evolutionary stable strategies (ESS), in its current form, is confronted with a difficulty when it tries to explain how some social behaviors initiate their evolution. We show that this difficulty may be removed by changing the assumption made tacitly in game theory (and in ESS) of randomness of meetings or encounters. In reality, such randomness seems to be rare in nature. Family, population and social structure, customs, and habits impose various types of deviation from randomness. Introducing nonrandomness of meeting in a way formally similar to assortative mating, we show that the bar to initial increase of inherited cooperative or altruistic behaviors can be removed, provided there is sufficient assortment of meetings. Family structure may cause contacts predominantly between certain types of relatives, and one can reconstruct some results of classical kin selection in terms of evolutionary stable strategy with assortative meetings. Neighbor effects and group selection might be similarly treated. Assortment need not be a passive consequence of population and social structure, but it can also be actively pursued. Behaviors favoring the choice of cooperative companions will have the effect of favoring the evolution of cooperativeness. It can be shown that discrimination in the choice of companions, especially if combined with assortment, can favor the development of cooperativeness, making initial increase of cooperative behavior possible even at levels of assortment passively imposed which would not be adequate, per se, to guarantee the increase of cooperativeness. It is possible that, in some cases, cooperativeness and behavior favoring some type of assortment are coselected.

  19. Gender Norms and Retaliatory Violence against Spouses and Acquaintances

    Science.gov (United States)

    Feld, Scott L.; Felson, Richard B.

    2008-01-01

    This article examines an experiment embedded within a nationally representative survey of adult Americans to investigate gender norms regarding retaliatory violence between spouses and acquaintances. Contrary to claims that societal norms permit violence within marriage, respondents disapproved of retaliatory violence against spouses more than…

  20. Marital assortment and phenotypic convergence: longitudinal evidence.

    Science.gov (United States)

    Caspi, A; Herbener, E S

    1993-01-01

    This study provides a direct test of whether the observed similarity of spouses is due to initial assortment rather than to convergence of phenotypes. With data from three well-known longitudinal studies, phenotypic convergence is examined using both variable- and person-centered analyses. The longitudinal evidence does not support the hypothesis that couples increasingly resemble each other with time. Spouse correlations most likely reflect initial assortment at marriage and not the convergence of phenotypes.

  1. Rate of phenotypic assortment in Tetrahymena thermophila.

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    Doerder, F P; Deak, J C; Lief, J H

    1992-01-01

    During vegetative, asexual reproduction in heterozygous Tetrahymena thermophila, the macronucleus divides amitotically to produce clonal lineages that express either one or the other allele but not both. Because such phenotypic assortment has been described for every locus studied, its mechanism has important implications concerning the development and structure of the macronucleus. The primary tools to study assortment are Rf, the rate at which subclones come to express a single allele stably, and the output ratio, the ratio of assortee classes. Because Rf is related to the number of assorting units, a constant Rf for all loci suggests that all genes are maintained at the same copy number. Output ratios reflect the input ratio of assorting units, with a 1:1 output ratio implying equal numbers of alleles at the end of macronuclear development. Because different outcomes would suggest a different macronuclear structure, it is crucial that these parameters be accurately measured. Although published Rf values are similar for all loci measured, there has been no commonly accepted form of presentation and analysis. Here we examine the experimental determination of Rf. First, we use computer simulation to describe how the variability inherent in the assortment process affects experimental determination of Rf. Second, we describe a simple method of plotting assortment data that permits the uniform calculation of Rf, and we describe how to measure Rf accurately in instances when it is possible to score only the recessive allele. Using this method to produce truly comparable Rfs for all published data, we find that most, if not all, loci assort at Rfs consistent with approximately 45 assorting units, as has been asserted.

  2. Higher order assortativity in complex networks

    CERN Document Server

    Arcagni, Alberto; Stefani, Silvana; Torriero, Anna

    2016-01-01

    Assortativity was first introduced by Newman and has been extensively studied and applied to many real world networked systems since then. Assortativity is a graph metrics and describes the tendency of high degree nodes to be directly connected to high degree nodes and low degree nodes to low degree nodes. It can be interpreted as a first order measure of the connection between nodes, i.e. the first autocorrelation of the degree-degree vector. Even though assortativity has been used so extensively, to the author's knowledge, no attempt has been made to extend it theoretically. This is the scope of our paper. We will introduce higher order assortativity by extending the Newman index based on a suitable choice of the matrix driving the connections. Higher order assortativity will be defined for paths, shortest paths, random walks of a given time length, connecting any couple of nodes. The Newman assortativity is achieved for each of these measures when the matrix is the adjacency matrix, or, in other words, the...

  3. Simple models of assortment through environmental feedback.

    Science.gov (United States)

    Pepper, John W

    2007-01-01

    Social evolution depends critically on assortment, or segregation versus even mixing, between cooperators and noncooperators. Altruistic traits, which reduce the absolute fitness of their bearers, cannot evolve without positive assortment (excess segregation). The question of how positive assortment can arise has been controversial, but most evolutionary biologists believe that common descent is the only effective general mechanism. Here I investigate another recently proposed mechanism for generating nonrandom assortment, termed environmental feedback. This requires only that two forms of a trait affect the quality of the local environment differently in such a way that all individuals are more likely to leave low-quality locales. Experiments with simple computational models confirm that environmental feedback generates significant levels of genetic similarity among non-kin within locales. The mechanism is fairly general, and can under some conditions produce levels of genetic similarity comparable to those resulting from close genealogical relationship. Environmental feedback can also generate the negative assortment necessary for the evolution of spiteful traits. Environmental feedback is expected to create positive frequency-dependent selection, which thus favor any social trait that becomes common in the population. Results from this stylized model suggest that environmental feedback could be important in the evolution of both cooperation and spite, within as well as between species.

  4. Multivariate models of mixed assortment: phenotypic assortment and social homogamy for education and fluid ability.

    Science.gov (United States)

    Reynolds, C A; Baker, L A; Pedersen, N L

    2000-11-01

    Phenotypic assortment is assumed to be the principal mechanism of spouse similarity in most biometrical studies. Other assortment mechanisms, such as social homogamy, may be plausible. Two models are presented that consider phenotypic assortment and social homogamy simultaneously (i.e., mixed assortment), where selective associations between social background factors (Model I) versus selective associations between total environments (Model II) distinguish the models. A series of illustrative analyses was undertaken for education and fluid ability available on a sample of 116 Swedish twin pairs and their spouses. On the basis of several fit criteria Model I was preferred over Model II. Both social homogamy and phenotypic assortment may contribute to spouse similarity for educational attainment and fluid ability. Furthermore, spouse similarity for fluid ability may arise indirectly from social homogamy and phenotypic assortment for educational attainment. Power analyses indicated greater observed power for Model I than Model II. Additional power analyses indicated that considerably more twin-spouse sets would be needed for Model II than Model I, to resolve social homogamy and phenotypic assortment. Effects of misspecification of mechanisms of spouse similarity are also briefly discussed.

  5. Assortativity in generalized preferential attachment models

    CERN Document Server

    Krot, Alexander

    2016-01-01

    In this paper, we analyze assortativity of preferential attachment models. We deal with a wide class of preferential attachment models (PA-class). It was previously shown that the degree distribution in all models of the PA-class follows a power law. Also, the global and the average local clustering coefficients were analyzed. We expand these results by analyzing the assortativity property of the PA-class of models. Namely, we analyze the behavior of $d_{nn}(d)$ which is the average degree of a neighbor of a vertex of degree $d$.

  6. Assortative mating by unwed biological parents of adopted children.

    Science.gov (United States)

    Plomin, R; DeFries, J C; Roberts, M K

    1977-04-22

    Analyses of data obtained from 662 unwed couples whose children were relinquished for adoption reveal that biological parents of adopted children mate assortatively. For physical characters, assortative mating of unwed parents was similar to that of wed parents; for behavior characters, however, there was less assortative mating by the unwed parents. Because assortative mating inflates estimates of genetic parameters in adoption studies, future studies should collect information on both biological parents.

  7. Anticipated identification costs: Improving assortment evaluation by diagnostic attributes

    NARCIS (Netherlands)

    Herpen, van E.; Pieters, F.G.M.

    2007-01-01

    Abstract Consumers often make quick assessments of product assortments, to determine if these are worthwhile for further investigation. They anticipate how difficult it will be to distinguish the various options in the assortment, which will influence their assortment evaluations. We reason that the

  8. Assortment and the evolution of generalized reciprocity.

    Science.gov (United States)

    Rankin, Daniel J; Taborsky, Michael

    2009-07-01

    Reciprocity is often invoked to explain cooperation. Reciprocity is cognitively demanding, and both direct and indirect reciprocity require that individuals store information about the propensity of their partners to cooperate. By contrast, generalized reciprocity, wherein individuals help on the condition that they received help previously, only relies on whether an individual received help in a previous encounter. Such anonymous information makes generalized reciprocity hard to evolve in a well-mixed population, as the strategy will lose out to pure defectors. Here we analyze a model for the evolution of generalized reciprocity, incorporating assortment of encounters, to investigate the conditions under which it will evolve. We show that, in a well-mixed population, generalized reciprocity cannot evolve. However, incorporating assortment of encounters can favor the evolution of generalized reciprocity in which indiscriminate cooperation and defection are both unstable. We show that generalized reciprocity can evolve under both the prisoner's dilemma and the snowdrift game.

  9. Assortativity Decreases the Robustness of Interdependent Networks

    CERN Document Server

    Zhou, Di; Scala, Antonio; Stanley, H Eugene

    2012-01-01

    The protection of critical infrastructures is one of the highest priorities in our technological society. It was recently recognized that interdependencies among different networks can play a crucial role in triggering cascading failures and hence system-wide disasters. A recent model shows how pairs of interdependent networks can exhibit an abrupt percolation transition as failures accumulate. We report on the effects of topology on failure propagation for a model system consisting of two interdependent networks. We find that the internal node correlations in each of the two interdependent networks significantly changes the critical density of failures that triggers the total disruption of the two-network system. We find, in particular, that the assortativity within a single network decreases the robustness of the entire system. The results of this study on the influence of assortativity may provide insights into ways of improving the robustness of network architecture, and thus enhance the level of protecti...

  10. Emergence of Clustering in an Acquaintance Model without Homophily

    CERN Document Server

    Bhat, Uttam; Redner, S

    2014-01-01

    We introduce an agent-based acquaintance model in which social links are created by processes in which there is no explicit homophily. In spite of this constraint, highly-clustered social networks can arise. The crucial feature of our model is that of variable transitive interactions. That is, when an agent introduces two unconnected friends, the rate at which a connection actually occurs between them is controllable. As this transitive interaction rate is varied, the social network undergoes a dramatic clustering transition and the network consists of a collection of well-defined communities close to the transition. As a function of time, the network can undergo an incomplete gelation transition, in which the gel, or giant cluster, does not constitute the entire network, even at infinite time. Some of the clustering properties of our model also arise, albeit less dramatically, in Facebook networks.

  11. Change in BMI accurately predicted by social exposure to acquaintances.

    Directory of Open Access Journals (Sweden)

    Rahman O Oloritun

    Full Text Available Research has mostly focused on obesity and not on processes of BMI change more generally, although these may be key factors that lead to obesity. Studies have suggested that obesity is affected by social ties. However these studies used survey based data collection techniques that may be biased toward select only close friends and relatives. In this study, mobile phone sensing techniques were used to routinely capture social interaction data in an undergraduate dorm. By automating the capture of social interaction data, the limitations of self-reported social exposure data are avoided. This study attempts to understand and develop a model that best describes the change in BMI using social interaction data. We evaluated a cohort of 42 college students in a co-located university dorm, automatically captured via mobile phones and survey based health-related information. We determined the most predictive variables for change in BMI using the least absolute shrinkage and selection operator (LASSO method. The selected variables, with gender, healthy diet category, and ability to manage stress, were used to build multiple linear regression models that estimate the effect of exposure and individual factors on change in BMI. We identified the best model using Akaike Information Criterion (AIC and R(2. This study found a model that explains 68% (p<0.0001 of the variation in change in BMI. The model combined social interaction data, especially from acquaintances, and personal health-related information to explain change in BMI. This is the first study taking into account both interactions with different levels of social interaction and personal health-related information. Social interactions with acquaintances accounted for more than half the variation in change in BMI. This suggests the importance of not only individual health information but also the significance of social interactions with people we are exposed to, even people we may not consider as

  12. Phenotypic assortment in Tetrahymena thermophila: assortment kinetics of antibiotic-resistance markers, tsA, death, and the highly amplified rDNA locus.

    Science.gov (United States)

    Merriam, E V; Bruns, P J

    1988-10-01

    Phenotypic assortment in Tetrahymena thermophila results from random distribution of alleles during amitotic division of the macronucleus. The rate of assortment is dependent on input ratio and the number of assorting units. The assortment of the antibiotic resistance markers Chx, Mpr and gal was determined and is consistent for each with the model of 45 assorting chromosomes. The gene tsA (previously ts-1) shows normal assortment, in contrast to previous reports. A mutation in the highly amplified ribosomal locus (rdnA2) assorts as if present at only 45 copies. Death of clones occurred at a rate consistent with assortment for a single gene.

  13. ASSORTMENT AND PRICE POLICY OF STATE PHARMACIES OF MOSCOW

    Directory of Open Access Journals (Sweden)

    I. V. Voronovich

    2015-01-01

    Full Text Available The most important index which determines the level and quality of pharmaceutical support is the correspondence of assortment to consumers needs. Assortment policy is determined by the functions implemented, and the problems of organization of pharmaceutical support of medicinal organizations within the frameworks of substantiated and reasonable expenditure of budget funds, and affordable pharmaceutical support of the population. The purpose of this research was the study of assortment and price policy of state pharmacies of Moscow. The objects were pharmacy subdivisions of state pharmacy network of Moscow. We have used sociological methods (questionnaire, interviewing, method of marketing, and statistic analysis. We have studied the assortment structure, assortment groups’ distribution on price segments. We have established that the drugs, more than 60% of which are foreign-made occupied more than a half of the assortment. Medicinal drugs in 50 rubles price spectrum occupy the biggest share of pharmacy assortment. Distribution within every assortment group revealed that more than a half of drugs are in average price spectrum from 50 to 500 rubles. Average charge for VED amounts to 21.87%, and for drugs which were not included in VED list – 34.07%. The charge for the goods, the price of which is not regulated, trade charge is more. 

  14. Assortment structure in beech coppice stands in Boljevac region

    Directory of Open Access Journals (Sweden)

    Danilović Milorad

    2004-01-01

    Full Text Available Assortment structure in beech coppice stands was studied in the area of Boljevac. Assortment structure was evaluated according to the articles of the valid standard (JUS. The assortments represented in the assortment structure, based on the stemwood quality are: Logs for matches, sawlogs I II and III classes, mine timber, technical roundwood, pulpwood, wood for excelsior and fuelwood, I and II classes. The results of the analyses show that the value assortment structure (sum of the values of assortments produced from one tree grows significantly with the increase of tree diameter and this dependence is presented by a degree function. The value percentage of logs for matches, sawlogs of the I and II classes, technical roundwood, mine timber, fuelwood and pulpwood, grows with the increase of the tree diameter. The occurrence of better quality logs (sawlogs in these stands, in contrast to the beech coppice stand in the area of Crni Vrh results from the more favourable diameter structure. There are no statistically significant differences between the value assortment structure on the established sample plot series within the same locality, consequently the data ere united. Because of the differences in stand age, the data are not unified for the localities, although there are no statistically significant differences between value assortment structure for diameter degrees represented in them. False heart (red heart is one of very significant defects of beech wood, and its incidence, inter alia, depends on tree age. The low effect of this defect of wood resulted in a significant percentage of logs for matches. Along with the value assortment structure this paper also presents the percentage of assortments depending on tree diameter.

  15. Evolution of assortative mating in a population expressing dominance.

    Directory of Open Access Journals (Sweden)

    Kristan A Schneider

    Full Text Available In this article, we study the influence of dominance on the evolution of assortative mating. We perform a population-genetic analysis of a two-locus two-allele model. We consider a quantitative trait that is under a mixture of frequency-independent stabilizing selection and density- and frequency-dependent selection caused by intraspecific competition for a continuum of resources. The trait is determined by a single (ecological locus and expresses intermediate dominance. The second (modifier locus determines the degree of assortative mating, which is expressed in females only. Assortative mating is based on similarities in the quantitative trait ('magic trait' model. Analytical conditions for the invasion of assortment modifiers are derived in the limit of weak selection and weak assortment. For the full model, extensive numerical iterations are performed to study the global dynamics. This allows us to gain a better understanding of the interaction of the different selective forces. Remarkably, depending on the size of modifier effects, dominance can have different effects on the evolution of assortment. We show that dominance hinders the evolution of assortment if modifier effects are small, but promotes it if modifier effects are large. These findings differ from those in previous work based on adaptive dynamics.

  16. Assortative mating for cultural identification as indicated by language use.

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    Nagoshi, C T; Johnson, R C; Danko, G P

    1990-01-01

    Persons of Japanese ancestry from Hawaii who marry within their own racial/ethnic group show a significant degree of homogamous assortative mating for "pidgin" and for standard English usage, variables reflective of important cultural differences in Hawaii. Persons of Japanese ancestry who married persons of other racial/ethnic groups had less exposure to pidgin in their parental homes and were less likely to speak this dialect of English. Sibling-spouse analyses suggested that assortment for such language use is entirely due to social homogamy rather than active phenotypic assortment.

  17. The role of personality and intelligence in assortative mating.

    Science.gov (United States)

    Escorial, Sergio; Martin-Buro, Carmen

    2012-07-01

    Assortative mating is the individuals' tendency to mate with those who are similar to them in some variables, at a higher rate than would be expected from random. This study aims to provide empirical evidence of assortative mating through the Big Five model of personality and two measures of intelligence using Spanish samples. The sample consisted of 244 Spanish couples. It was divided into two groups according to relationship time. The effect of age, educational level and socioeconomic status was controlled. The results showed strong assortative mating for intelligence and moderate for personality. The strongest correlations for Personality were found in Openness, Agreeableness and Conscientiousness.

  18. Continuous microfluidic assortment of interactive ligands (CMAIL)

    Science.gov (United States)

    Hsiao, Yi-Hsing; Huang, Chao-Yang; Hu, Chih-Yung; Wu, Yen-Yu; Wu, Chung-Hsiun; Hsu, Chia-Hsien; Chen, Chihchen

    2016-08-01

    Finding an interactive ligand-receptor pair is crucial to many applications, including the development of monoclonal antibodies. Biopanning, a commonly used technique for affinity screening, involves a series of washing steps and is lengthy and tedious. Here we present an approach termed continuous microfluidic assortment of interactive ligands, or CMAIL, for the screening and sorting of antigen-binding single-chain variable antibody fragments (scFv) displayed on bacteriophages (phages). Phages carrying native negative charges on their coat proteins were electrophoresed through a hydrogel matrix functionalized with target antigens under two alternating orthogonal electric fields. During the weak horizontal electric field phase, phages were differentially swept laterally depending on their affinity for the antigen, and all phages were electrophoresed down to be collected during the strong vertical electric field phase. Phages of different affinity were spatially separated, allowing the continuous operation. More than 105 CFU (colony forming unit) antigen-interacting phages were isolated with ~100% specificity from a phage library containing 3 × 109 individual members within 40 minutes of sorting using CMAIL. CMAIL is rapid, sensitive, specific, and does not employ washing, elution or magnetic beads. In conclusion, we have developed an efficient and cost-effective method for isolating and sorting affinity reagents involving phage display.

  19. Assortative mixing in functional brain networks during epileptic seizures

    CERN Document Server

    Bialonski, Stephan

    2013-01-01

    We investigate assortativity of functional brain networks before, during, and after one-hundred epileptic seizures with different anatomical onset locations. We construct binary functional networks from multi-channel electroencephalographic data recorded from 60 epilepsy patients, and from time-resolved estimates of the assortativity coefficient we conclude that positive degree-degree correlations are inherent to seizure dynamics. While seizures evolve, an increasing assortativity indicates a segregation of the underlying functional network into groups of brain regions that are only sparsely interconnected, if at all. Interestingly, assortativity decreases already prior to seizure end. Together with previous observations of characteristic temporal evolutions of global statistical properties and synchronizability of epileptic brain networks, our findings may help to gain deeper insights into the complicated dynamics underlying generation, propagation, and termination of seizures.

  20. Lower bound of assortativity coefficient in scale-free networks

    CERN Document Server

    Yang, Dan; Zhou, Tao

    2016-01-01

    The degree-degree correlation is important in understanding the structural organization of a network and the dynamics upon a network. Such correlation is usually measured by the assortativity coefficient $r$, with natural bounds $r \\in [-1,1]$. For scale-free networks with power-law degree distribution $p(k) \\sim k^{-\\gamma}$, we analytically obtain the lower bound of assortativity coefficient in the limit of large network size, which is not -1 but dependent on the power-law exponent $\\gamma$. This work challenges the validation of assortativity coefficient in heterogeneous networks, suggesting that one cannot judge whether a network is positively or negatively correlated just by looking at its assortativity coefficient.

  1. Assortative and disassortative mixing investigated using the spectra of graphs

    CERN Document Server

    Jalan, Sarika

    2015-01-01

    We investigate the impact of degree-degree correlations on the spectra of networks. Even though density distributions exhibit drastic changes depending on the (dis)assortative mixing and the network architecture, the short range correlations in eigenvalues exhibit universal RMT predictions. The long range correlations turn out to be a measure of randomness in (dis)assortative networks. The analysis further provides insight in to the origin of high degeneracy at the zero eigenvalue displayed by majority of the biological networks.

  2. Managing assortment in terms of foreign economic activity of the enterprise trade

    Directory of Open Access Journals (Sweden)

    Sergei Udin

    2015-02-01

    Full Text Available Assortment management is the main task of trade enterprises. Assortment is a basic tool in the marketing mix, it affects the sales and distribution costs. Management of assortment is an important issue for interna-tional companies, because they have a high cost of export-import operations, and this fact influences the financial result. The article considers the information technology assortment management aimed at increas-ing turnover and reducing distribution costs by forming a balanced assortment structure.

  3. Reflective acquaintance with other minds and the double-sided disclosure of the lived-body

    DEFF Research Database (Denmark)

    Farley, Adam

    2015-01-01

    This paper will consider the phenomenological disclosure of the reflecting-body vis-à-vis subject’s reflective acquaintance with other minds. To this end, phenomenological accounts regarding the double-sided disclosure of the lived-body will be expounded and developed. It will be argued that the ......This paper will consider the phenomenological disclosure of the reflecting-body vis-à-vis subject’s reflective acquaintance with other minds. To this end, phenomenological accounts regarding the double-sided disclosure of the lived-body will be expounded and developed. It will be argued...... research concerning subjects’ developing acquaintance with other minds and its perturbance are briefly considered....

  4. Assortment structure in beech coppice stands in the Crni vrh region

    Directory of Open Access Journals (Sweden)

    Danilović Milorad

    2003-01-01

    Full Text Available Assortment structure in beech coppice stands was studied for the region of Crni vrh. Assortment structure was determined according to the standard (JUS in two ecological units. The study results show that the assortment value structure significantly increases with the increase of tree diameter and that there are no statistically significant differences in assortment structure between the selected ecological units. The dependence of the assortment value structure on tree diameter can be represented by an exponential function. The value percentage of assortments made of stem wood in theoretical crosscutting depending on tree diameter has an increasing tendency, except for the wood for excelsior.

  5. Assortment and packaging of the segmented rotavirus genome.

    Science.gov (United States)

    McDonald, Sarah M; Patton, John T

    2011-03-01

    The rotavirus (RV) genome comprises 11 segments of double-stranded RNA (dsRNA) and is contained within a non-enveloped, icosahedral particle. During assembly, a highly coordinated selective packaging mechanism ensures that progeny RV virions contain one of each genome segment. Cis-acting signals thought to mediate assortment and packaging are associated with putative panhandle structures formed by base-pairing of the ends of RV plus-strand RNAs (+RNAs). Viral polymerases within assembling core particles convert the 11 distinct +RNAs to dsRNA genome segments. It remains unclear whether RV +RNAs are assorted before or during encapsidation, and the functions of viral proteins during these processes are not resolved. However, as reviewed here, recent insights gained from the study of RV and two other segmented RNA viruses, influenza A virus and bacteriophage Φ6, reveal potential mechanisms of RV assortment and packaging.

  6. Geometric Assortative Growth Model for Small-World Networks

    Directory of Open Access Journals (Sweden)

    Yilun Shang

    2014-01-01

    Full Text Available It has been shown that both humanly constructed and natural networks are often characterized by small-world phenomenon and assortative mixing. In this paper, we propose a geometrically growing model for small-world networks. The model displays both tunable small-world phenomenon and tunable assortativity. We obtain analytical solutions of relevant topological properties such as order, size, degree distribution, degree correlation, clustering, transitivity, and diameter. It is also worth noting that the model can be viewed as a generalization for an iterative construction of Farey graphs.

  7. Emergence of scaling and assortative mixing through altruism

    Science.gov (United States)

    Li, Ping; Zhang, Jie; Small, Michael

    2011-06-01

    Many social networks, apart from displaying scale-free characteristics observed in some instances, possess another remarkable feature that distinguishes them from those that appear in biological and technological context-assortativity. However, little or no attention has been payed to the mechanism of assortativity in modeling these networks. Inspired by individuals' altruistic behavior in sociology, we develop a model with a different growth mechanism called “altruistic attachment”, which can reproduce not only the power law degree distribution but degree correlations. We study in detail the statistical properties of our network model, which we also demonstrate striking differences with the BA model, and can portray real social networks more precisely.

  8. Geometric assortative growth model for small-world networks.

    Science.gov (United States)

    Shang, Yilun

    2014-01-01

    It has been shown that both humanly constructed and natural networks are often characterized by small-world phenomenon and assortative mixing. In this paper, we propose a geometrically growing model for small-world networks. The model displays both tunable small-world phenomenon and tunable assortativity. We obtain analytical solutions of relevant topological properties such as order, size, degree distribution, degree correlation, clustering, transitivity, and diameter. It is also worth noting that the model can be viewed as a generalization for an iterative construction of Farey graphs.

  9. Lilium: breeding history of the modern cultivated assortment

    NARCIS (Netherlands)

    Tuyl, van J.M.; Arens, P.

    2011-01-01

    During the last 50 years the lily has become worldwide one of the most important flower bulbs and cut flowers. They are mainly cultivated in The Netherlands with bulb production acreage of more than 5000 ha. The assortment of lilies consists of thousands of cultivars which can be classified in diffe

  10. [Influence of seedling assortment on Panax notoginseng growth and yield].

    Science.gov (United States)

    Cui, X; Wang, C; Chen, Z

    1998-02-01

    Making Panax notoginseng seedling assortment according to seedling size before transplanting, the result shows that the influence is better, the yield of root tuber and fruit is higher. Culturing good seedling is the fundamental measure to increase yield of P. notoginseng.

  11. Unusual assortment of segments in 2 rare human rotavirus genomes.

    Science.gov (United States)

    De Grazia, Simona; Giammanco, Giovanni M; Potgieter, Christiaan A; Matthijnssens, Jelle; Banyai, Krisztian; Platia, Maria A; Colomba, Claudia; Martella, Vito

    2010-05-01

    Using full-length genome sequence analysis, we investigated 2 rare G3P[9] human rotavirus strains isolated from children with diarrhea. The genomes were recognized as assortments of genes closely related to rotaviruses originating from cats, ruminants, and humans. Results suggest multiple transmissions of genes from animal to human strains of rotaviruses.

  12. The Variety of An Assortment : An Extension to the Attribute-Based Approach

    NARCIS (Netherlands)

    Herpen, van H.W.I.; Pieters, F.G.M.

    2002-01-01

    In recent years, interest in category management has surged, and as a consequence, large retailers now systematically review their product assortments. Variety is a key property of assortments. Assortment variety can determine consumers' store choice and is only gaining in importance with today's in

  13. Assimilating atmosphere reanalysis in coupled data assimilation

    Science.gov (United States)

    Liu, Huaran; Lu, Feiyu; Liu, Zhengyu; Liu, Yun; Zhang, Shaoqing

    2016-06-01

    This paper tests the idea of substituting the atmospheric observations with atmospheric reanalysis when setting up a coupled data assimilation system. The paper focuses on the quantification of the effects on the oceanic analysis resulted from this substitution and designs four different assimilation schemes for such a substitution. A coupled Lorenz96 system is constructed and an ensemble Kalman filter is adopted. The atmospheric reanalysis and oceanic observations are assimilated into the system and the analysis quality is compared to a benchmark experiment where both atmospheric and oceanic observations are assimilated. Four schemes are designed for assimilating the reanalysis and they differ in the generation of the perturbed observation ensemble and the representation of the error covariance matrix. The results show that when the reanalysis is assimilated directly as independent observations, the root-mean-square error increase of oceanic analysis relative to the benchmark is less than 16% in the perfect model framework; in the biased model case, the increase is less than 22%. This result is robust with sufficient ensemble size and reasonable atmospheric observation quality (e.g., frequency, noisiness, and density). If the observation is overly noisy, infrequent, sparse, or the ensemble size is insufficiently small, the analysis deterioration caused by the substitution is less severe since the analysis quality of the benchmark also deteriorates significantly due to worse observations and undersampling. The results from different assimilation schemes highlight the importance of two factors: accurate representation of the error covariance of the reanalysis and the temporal coherence along each ensemble member, which are crucial for the analysis quality of the substitution experiment.

  14. Multiscale Data Assimilation

    Science.gov (United States)

    2014-09-30

    1 Multiscale Data Assimilation Dr. Pierre F.J. Lermusiaux Department of Mechanical Engineering, Center for Ocean Science and Engineering...concerned with next-generation multiscale data assimilation , with a focus on shelfbreak regions, including non-hydrostatic effects. Our long-term...goals are to: - Develop and utilize GMM-DO data assimilation schemes for rigorous multiscale inferences, where observations provide information on

  15. Thermospheric Data Assimilation

    Science.gov (United States)

    2016-05-05

    Thermospheric Data Assimilation 5a. CONTRACT NUMBER 5b. GRANT NUMBER FA9550-13-1-0058 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR(S) Dr. Tomoko...unlimited 13. SUPPLEMENTARY NOTES Program Manager: Dr. Julie J Moses, AFOSR, 703-696-9586, Julie.moses@us.af.mil 14. ABSTRACT This project...thermosphere-ionosphere first- principles model. An ensemble data assimilation procedure, constructed with the NCAR Data Assimilation Research Testbed

  16. Assortativity Effects on Diffusion-like Processes in Scale-free Networks

    CERN Document Server

    D'Agostino, Gregorio; Zlatić, Vinko; Caldarelli, Guido

    2011-01-01

    We study the variation in epidemic thresholds in complex networks with different assortativity properties. We determine the thresholds by applying spectral analysis to the matrices associated to the graphs. In order to produce graphs with a specific assortativity we introduce a procedure to sample the space of all the possible networks with a given degree sequence. Our analysis shows that while disassortative networks have an higher epidemiological threshold, assortative networks have a slower diffusion time for diseases. We also used these networks for evaluating the effects of assortativity in a specific dynamic model of sandpile. We show that immunization procedures give different results according to the assortativity of the network considered.

  17. A survey on acquaintance, orientation and behavior of general medical practitioners toward periodontal diseases

    Directory of Open Access Journals (Sweden)

    Supreet Kaur

    2015-01-01

    Full Text Available Background: An association between oral conditions such as periodontal diseases and systemic conditions is noted. As such, periodontal disease is associated with an increased risk of systemic illnesses such as cardiovascular disease, diabetes, adverse pregnancy outcome, atherosclerosis, stroke and hospital acquired pneumonia. The concept of diagnosing and treating a potential patient to minimize the deleterious effects of this chronic infectious and inflammatory condition on systemic conditions represents both an unprecedented challenge and opportunity to our profession. Keeping this in view, the present survey was designed to evaluate the acquaintance, orientation and behavior of general medical practitioners; concerning the effects of periodontal disease on systemic health. Materials and Methods: A typed questionnaire carrying four sets of questions was distributed among general medical practitioners of seven different government and private medical colleges and hospitals. Questionnaire was developed to assess the acquaintance, orientation and behavior of general medical practitioners toward periodontal disease. Results: Most of the respondents have knowledge regarding the signs and symptoms of periodontal disease and its association with cardiovascular disease. However, majority of them do not know about the potential effect of periodontal disease on other organ systems. Conclusion: General medical practitioners have inadequate knowledge regarding periodontal diseases. Hence, oral health related training should be an integral part of the medical curriculum.

  18. Displacement Data Assimilation

    CERN Document Server

    Rosenthal, W Steven; Mariano, Arthur J; Restrepo, Juan M

    2016-01-01

    We show that modifying a Bayesian data assimilation scheme by incorporating kinematically-consistent displacement corrections produces a scheme that is demonstrably better at estimating partially observed state vectors in a setting where feature information important. While the displacement transformation is not tied to any particular assimilation scheme, here we implement it within an ensemble Kalman Filter and demonstrate its effectiveness in tracking stochastically perturbed vortices.

  19. Spreading dynamics in heterogeneous graphs: Beyond the assortativity coefficient

    Science.gov (United States)

    Sugarelli, Michele; Vergni, Davide

    2017-02-01

    We study spreading dynamics of a reaction-diffusion process in a special class of heterogeneous graphs with Poissonian degree distribution and composed of both local and long range links. The behavior of the spreading dynamics on such networks are investigated by relating them to the topological features of graphs. We find that the degree of assortativity can give just some indication about the large scale behavior of the spreading dynamics while a detailed description of the process can be addressed by introducing new, more appropriate, topological quantities linked to the distance between nodes.

  20. Reconsidering the heritability of intelligence in adulthood: taking assortative mating and cultural transmission into account.

    Science.gov (United States)

    Vinkhuyzen, Anna A E; van der Sluis, Sophie; Maes, Hermine H M; Posthuma, Danielle

    2012-03-01

    Heritability estimates of general intelligence in adulthood generally range from 75 to 85%, with all heritability due to additive genetic influences, while genetic dominance and shared environmental factors are absent, or too small to be detected. These estimates are derived from studies based on the classical twin design and are based on the assumption of random mating. Yet, considerable positive assortative mating has been reported for general intelligence. Unmodeled assortative mating may lead to biased estimates of the relative magnitude of genetic and environmental factors. To investigate the effects of assortative mating on the estimates of the variance components of intelligence, we employed an extended twin-family design. Psychometric IQ data were available for adult monozygotic and dizygotic twins, their siblings, the partners of the twins and siblings, and either the parents or the adult offspring of the twins and siblings (N = 1314). Two underlying processes of assortment were considered: phenotypic assortment and social homogamy. The phenotypic assortment model was slightly preferred over the social homogamy model, suggesting that assortment for intelligence is mostly due to a selection of mates on similarity in intelligence. Under the preferred phenotypic assortment model, the variance of intelligence in adulthood was not only due to non-shared environmental (18%) and additive genetic factors (44%) but also to non-additive genetic factors (27%) and phenotypic assortment (11%).This non-additive nature of genetic influences on intelligence needs to be accommodated in future GWAS studies for intelligence.

  1. Models of cultural niche construction with selection and assortative mating.

    Science.gov (United States)

    Creanza, Nicole; Fogarty, Laurel; Feldman, Marcus W

    2012-01-01

    Niche construction is a process through which organisms modify their environment and, as a result, alter the selection pressures on themselves and other species. In cultural niche construction, one or more cultural traits can influence the evolution of other cultural or biological traits by affecting the social environment in which the latter traits may evolve. Cultural niche construction may include either gene-culture or culture-culture interactions. Here we develop a model of this process and suggest some applications of this model. We examine the interactions between cultural transmission, selection, and assorting, paying particular attention to the complexities that arise when selection and assorting are both present, in which case stable polymorphisms of all cultural phenotypes are possible. We compare our model to a recent model for the joint evolution of religion and fertility and discuss other potential applications of cultural niche construction theory, including the evolution and maintenance of large-scale human conflict and the relationship between sex ratio bias and marriage customs. The evolutionary framework we introduce begins to address complexities that arise in the quantitative analysis of multiple interacting cultural traits.

  2. Emergence of assortative mixing between clusters of cultured neurons.

    Directory of Open Access Journals (Sweden)

    Sara Teller

    2014-09-01

    Full Text Available The analysis of the activity of neuronal cultures is considered to be a good proxy of the functional connectivity of in vivo neuronal tissues. Thus, the functional complex network inferred from activity patterns is a promising way to unravel the interplay between structure and functionality of neuronal systems. Here, we monitor the spontaneous self-sustained dynamics in neuronal cultures formed by interconnected aggregates of neurons (clusters. Dynamics is characterized by the fast activation of groups of clusters in sequences termed bursts. The analysis of the time delays between clusters' activations within the bursts allows the reconstruction of the directed functional connectivity of the network. We propose a method to statistically infer this connectivity and analyze the resulting properties of the associated complex networks. Surprisingly enough, in contrast to what has been reported for many biological networks, the clustered neuronal cultures present assortative mixing connectivity values, meaning that there is a preference for clusters to link to other clusters that share similar functional connectivity, as well as a rich-club core, which shapes a 'connectivity backbone' in the network. These results point out that the grouping of neurons and the assortative connectivity between clusters are intrinsic survival mechanisms of the culture.

  3. Emergence of Assortative Mixing between Clusters of Cultured Neurons

    Science.gov (United States)

    Teller, Sara; Granell, Clara; De Domenico, Manlio; Soriano, Jordi; Gómez, Sergio; Arenas, Alex

    2014-01-01

    The analysis of the activity of neuronal cultures is considered to be a good proxy of the functional connectivity of in vivo neuronal tissues. Thus, the functional complex network inferred from activity patterns is a promising way to unravel the interplay between structure and functionality of neuronal systems. Here, we monitor the spontaneous self-sustained dynamics in neuronal cultures formed by interconnected aggregates of neurons (clusters). Dynamics is characterized by the fast activation of groups of clusters in sequences termed bursts. The analysis of the time delays between clusters' activations within the bursts allows the reconstruction of the directed functional connectivity of the network. We propose a method to statistically infer this connectivity and analyze the resulting properties of the associated complex networks. Surprisingly enough, in contrast to what has been reported for many biological networks, the clustered neuronal cultures present assortative mixing connectivity values, meaning that there is a preference for clusters to link to other clusters that share similar functional connectivity, as well as a rich-club core, which shapes a ‘connectivity backbone’ in the network. These results point out that the grouping of neurons and the assortative connectivity between clusters are intrinsic survival mechanisms of the culture. PMID:25188377

  4. Palindromes drive the re-assortment in Influenza A.

    Science.gov (United States)

    Zubaer, Abdullah; Thapa, Simrika

    2011-01-01

    Different subtypes of Influenza A virus are associated with species specific, zoonotic or pandemic Influenza. The cause of its severity underlies in complicated evolution of its segmented RNA genome. Although genetic shift and genetic drift are well known in the evolution of this virus, we reported the significant role of unique RNA palindromes in its evolution. Our computational approach identified the existence of unique palindromes in each subtype of Influenza A virus with its absence in Influenza B relating the fact of virulence and vigorous genetic hitchhiking in Influenza A. The current study focused on the re-assortment event responsible for the emergence of pandemic-2009 H1N1 virus, which is associated with outgrow of new palindrome and in turn, changing its RNA structure. We hypothesize that the change in RNA structure due to the presence of palindrome facilitates the event of re-assortment in Influenza A. Thus the evolutionary process of Influenza A is much more complicated as previously known, and that has been demonstrated in this study.

  5. The role of active assortment in spousal similarity.

    Science.gov (United States)

    Watson, David; Beer, Andrew; McDade-Montez, Elizabeth

    2014-04-01

    Previous research has established the existence of active assortment, that is, a preference for similarity in a potential mate. Few studies, however, have directly related mate preferences to dyadic similarity by examining them in the same participants. We collected both similarity and mate preference data in two studies: undergraduate students (N = 519) and newlyweds (N = 335). In both studies, women placed a higher value on desirable personality characteristics (e.g., higher Conscientiousness and Agreeableness, lower Neuroticism) than did men. Nevertheless, our data also provided strong evidence of consensual mate preferences: Men and women both desired partners who were agreeable, conscientious, emotionally stable, intelligent, and physically attractive; furthermore, participants desired partners who were better (e.g., more agreeable and attractive) than they were. In contrast, attitudinal variables such as religiousness and political orientation displayed much weaker consensus but showed significant dyadic similarity in both samples; similarity coefficients for personality tended to be positive, but lower. Finally, analyses revealed a direct link between actual and desired similarity: Couples displayed the strongest similarity on those variables for which participants expressed the strongest preference for similarity. Our findings strongly suggest that active assortment is partly responsible for dyadic similarity.

  6. Models of cultural niche construction with selection and assortative mating.

    Directory of Open Access Journals (Sweden)

    Nicole Creanza

    Full Text Available Niche construction is a process through which organisms modify their environment and, as a result, alter the selection pressures on themselves and other species. In cultural niche construction, one or more cultural traits can influence the evolution of other cultural or biological traits by affecting the social environment in which the latter traits may evolve. Cultural niche construction may include either gene-culture or culture-culture interactions. Here we develop a model of this process and suggest some applications of this model. We examine the interactions between cultural transmission, selection, and assorting, paying particular attention to the complexities that arise when selection and assorting are both present, in which case stable polymorphisms of all cultural phenotypes are possible. We compare our model to a recent model for the joint evolution of religion and fertility and discuss other potential applications of cultural niche construction theory, including the evolution and maintenance of large-scale human conflict and the relationship between sex ratio bias and marriage customs. The evolutionary framework we introduce begins to address complexities that arise in the quantitative analysis of multiple interacting cultural traits.

  7. Explosive Synchronization and Emergence of Assortativity on Adaptive Networks

    Institute of Scientific and Technical Information of China (English)

    JIANG Hui-Jun; WU Hao; HOU Zhong-Huai

    2011-01-01

    @@ We report an explosive transition from incoherence to synchronization of coupled phase oscillators on adaptive networks,following an Achlioptas process based on dynamic clustering information.During each adaptive step of the network topology,a portion of the links is randomly removed and the same amount of new links is generated following the so-called product rules(PRs) applied to the dynamic clusters.Particularly,two types of PRs are considered,namely,the min-PR and max-PR.We demonstrate that the synchronization transition becomes explosive in both cases.Interestingly,we find that the min-PR rule can lead to disassortativity of the network topology,while the max-PR rule leads to assortativity.%We report an explosive transition from incoherence to synchronization of coupled phase oscillators on adaptive networks, following an Achlioptas process based on dynamic clustering information. During each adaptive step of the network topology, a portion of the links is randomly removed and the same amount of new links is generated following the so-called product rules (PRs) applied to the dynamic clusters. Particularly, two types of PRs are considered, namely, the min-PR and max-PR. We demonstrate that the synchronization transition becomes explosive in both cases. Interestingly, we find that the min-PR rule can lead to disassortativity of the network topology, while the max-PR rule leads to assortativity.

  8. Judge me, judge me not: The role of eye size and observer gender on acquaintance rape

    Directory of Open Access Journals (Sweden)

    María Clara Ferrão

    2016-01-01

    Full Text Available The purpose of this study was to examine the effect of eye size and observer gender on perceived initial attraction, honesty, and attributions of responsibility for rape. A 3 (eye size: small vs. normal vs. large x 2 (observer gender: female vs. male experimental design was tested. Ninety participants (45 women and 45 men observed one of three randomly assigned female faces (with eye size manipulation, and rated initial attraction and honesty. They were then asked to read an acquaintance rape scenario with a traditional woman, rating the victim and perpetrator responsibility. Eye size was shown to affect all the study variables: the female face with large eyes was seen as more attractive and honest, was held less responsible for her own victimization, and the offender was held more responsible. Gender was proven to affect perceived initial attraction and victim responsibility. Theoretical and práctical implications were discussed.

  9. Methods of forming and realization of assortment policy of retail business enterprises

    Directory of Open Access Journals (Sweden)

    Kudenko Kiril

    2016-07-01

    Full Text Available Within the framework of the article systematisation of methods of forming and realisation of assortment policy of enterprises of retail business is done. Recommendations concerning the priority of the use of separate methods of forming and realisation of assortment policy with different purposes, taking into account their content, advantages and disadvantages are developed.

  10. Over-Education and Assortative Matching in Partnerships: A Theoretical Analysis

    Science.gov (United States)

    Tampieri, Alessandro

    2016-01-01

    This paper argues that assortative matching may explain over-education. Education determines individuals' income and, due to the presence of assortative matching, the quality of partners in personal, social and working life. Thus, an individual acquires education to improve the expected partners' quality. However, since every individual of the…

  11. Innovative approaches to the prices management within the framework of product assortment

    Directory of Open Access Journals (Sweden)

    O.I. Laburtseva

    2011-03-01

    Full Text Available The article is devoted to the development of methodical recommendations on a products prices management with presence of substitution or complementation connections in the product assortment. The variants of product intercommunications in the assortment of enterprise are systematized, the proper methodical approaches to pricing are recommended and the results of business-approbation of recommendations are presented.

  12. Evaluating Data Assimilation Algorithms

    CERN Document Server

    Law, K J H

    2011-01-01

    Data assimilation refers to methodologies for the incorporation of noisy observations of a physical system into an underlying model in order to infer the properties of the state of the system (and/or parameters). The model itself is typically subject to uncertainties, in the input data and in the physical laws themselves. This leads naturally to a Bayesian formulation in which the posterior probability distribution of the system state, given the observations, plays a central conceptual role. The aim of this paper is to use this Bayesian posterior probability distribution as a gold standard against which to evaluate various commonly used data assimilation algorithms. A key aspect of geophysical data assimilation is the high dimensionality of the computational model. With this in mind, yet with the goal of allowing an explicit and accurate computation of the posterior distribution in order to facilitate our evaluation, we study the 2D Navier-Stokes equations in a periodic geometry. We compute the posterior prob...

  13. Colour assortative pairing in a colour polymorphic lizard is independent of population morph diversity

    Science.gov (United States)

    Pérez i de Lanuza, Guillem; Font, Enrique; Carretero, Miguel Ángel

    2016-10-01

    Previous work with a colour polymorphic population of Podarcis muralis (Lacertidae) revealed that lizards pair by ventral colour, favouring the same colour (i.e. homomorphic) pairs. Such assortative pairing, which probably results in colour assortative mating, can have consequences for the genetic structure of the population and potentially promote speciation. The population previously studied, located in the Pyrenees, encompasses white, yellow and orange animals, as well as intermediate white-orange and yellow-orange morphs. However, other Pyrenean populations of P. muralis have less ventral colour morphs. Our aim in this study is to test the generality of the assortative colour pairing system, extending our previous analyses to populations with different morph compositions and frequencies. The results show that the assortative pattern of pairing is similar in all the populations analysed and, hence, independent of morph composition and not restricted to pentamorphic populations. This suggests that assortative pairing by colour is a general phenomenon for colour polymorphic populations of P. muralis.

  14. Inducing Self-Organized Criticality in a network toy model by neighborhood assortativity

    CERN Document Server

    Allen-Perkins, Alfonso; Pastor, Juan Manuel

    2016-01-01

    Complex networks are a recent type of frameworks used to study complex systems with many interacting elements, such as Self-Organized Criticality (SOC). The network node's tendency to link to other nodes of similar type is characterized by assortative mixing. Real networks exhibit assortative mixing by vertex degree, however typical random network models, such as Erdos-Renyi or Barabasi-Albert, show no assortative arrangements. In this paper we introduce the neighborhood assortativity notion, as the tendency of a node to belong to a community (its neighborhood) showing an average property similar to its own. Imposing neighborhood assortative mixing by degree in a network toy model, SOC dynamics can be found. The long-range correlations resulting from the criticality have been characterized by means of fluctuation analysis and show an anticorrelation in the node's activity. The model contains only one parameter and its statistics plots for different values of the parameter can be collapsed into a single curve....

  15. Predation risk as a driving force for phenotypic assortment: a cross-population comparison.

    Science.gov (United States)

    Croft, D P; Darden, S K; Ruxton, G D

    2009-05-22

    Frequency-dependent predation has been proposed as a general mechanism driving the phenotypic assortment of social groups via the 'oddity effect', which occurs when the presence of odd individuals in a group allows a predator to fixate on a single prey item, increasing the predator's attack-to-kill ratio. However, the generality of the oddity effect has been debated and, previously, there has not been an ecological assessment of the role of predation risk in driving the phenotypic assortment of social groups. Here, we compare the levels of body length assortment of social groups between populations of the Trinidadian guppy (Poecilia reticulata) that experience differences in predation risk. As predicted by the oddity effect hypothesis, we observe phenotypic assortment by body length to be greater under high predation risk. However, we found that a number of low-predation populations were also significantly assorted by body length, suggesting that other mechanisms may have a role to play.

  16. Optimality in Data Assimilation

    Science.gov (United States)

    Nearing, Grey; Yatheendradas, Soni

    2016-04-01

    It costs a lot more to develop and launch an earth-observing satellite than it does to build a data assimilation system. As such, we propose that it is important to understand the efficiency of our assimilation algorithms at extracting information from remote sensing retrievals. To address this, we propose that it is necessary to adopt completely general definition of "optimality" that explicitly acknowledges all differences between the parametric constraints of our assimilation algorithm (e.g., Gaussianity, partial linearity, Markovian updates) and the true nature of the environmetnal system and observing system. In fact, it is not only possible, but incredibly straightforward, to measure the optimality (in this more general sense) of any data assimilation algorithm as applied to any intended model or natural system. We measure the information content of remote sensing data conditional on the fact that we are already running a model and then measure the actual information extracted by data assimilation. The ratio of the two is an efficiency metric, and optimality is defined as occurring when the data assimilation algorithm is perfectly efficient at extracting information from the retrievals. We measure the information content of the remote sensing data in a way that, unlike triple collocation, does not rely on any a priori presumed relationship (e.g., linear) between the retrieval and the ground truth, however, like triple-collocation, is insensitive to the spatial mismatch between point-based measurements and grid-scale retrievals. This theory and method is therefore suitable for use with both dense and sparse validation networks. Additionally, the method we propose is *constructive* in the sense that it provides guidance on how to improve data assimilation systems. All data assimilation strategies can be reduced to approximations of Bayes' law, and we measure the fractions of total information loss that are due to individual assumptions or approximations in the

  17. A framework for analyzing contagion in assortative banking networks

    CERN Document Server

    Hurd, Thomas R; Melnik, Sergey

    2016-01-01

    We introduce a probabilistic framework that represents stylized banking networks with the aim of predicting the size of contagion events. Most previous work on random financial networks assumes independent connections between banks, whereas our framework explicitly allows for (dis)assortative edge probabilities (e.g., a tendency for small banks to link to large banks). We analyze default cascades triggered by shocking the network and find that the cascade can be understood as an explicit iterated mapping on a set of edge probabilities that converges to a fixed point. We derive a cascade condition that characterizes whether or not an infinitesimal shock to the network can grow to a finite size cascade, in analogy to the basic reproduction number $R_0$ in epidemic modelling. The cascade condition provides an easily computed measure of the systemic risk inherent in a given banking network topology. Using the percolation theory for random networks we also derive an analytic formula for the frequency of global cas...

  18. On Assimilation of English Sounds

    Institute of Scientific and Technical Information of China (English)

    刘恩华

    2015-01-01

    This paper makes a careful study of assimilation in English speaking, meanwhile a systematic knowledge of assimilation wil be helpful for the pronunciations of English learners, facilitate English fluency and improve listening comprehension.

  19. Displacement data assimilation

    Science.gov (United States)

    Rosenthal, W. Steven; Venkataramani, Shankar; Mariano, Arthur J.; Restrepo, Juan M.

    2017-02-01

    We show that modifying a Bayesian data assimilation scheme by incorporating kinematically-consistent displacement corrections produces a scheme that is demonstrably better at estimating partially observed state vectors in a setting where feature information is important. While the displacement transformation is generic, here we implement it within an ensemble Kalman Filter framework and demonstrate its effectiveness in tracking stochastically perturbed vortices.

  20. Saber y conocer: Un plan para su ensenaza (To know and to be acquainted with: A teaching plan).

    Science.gov (United States)

    Lizardi-Rivera, Carmen M.

    1995-01-01

    Focuses on how to teach English-speaking students of Spanish the practical distinction between the verbs, "saber" (to be cognizant of) and "conocer" (to be acquainted with). This article describes a solution proposed by K. Taylor for explaining the limits of the two verbs and examines similar proposals delineated in three other Spanish textbooks.…

  1. Determination of timber assortments obtainable from coppice chestnut stands (Susa Valley, Northern Italy

    Directory of Open Access Journals (Sweden)

    Nosenzo A

    2007-01-01

    Full Text Available Chestnut (Castanea sativa L. coppice stands currently cover about 195.000 ha of Piedmont (North-Western Italy surface, corresponding to 22.4 % of the overall forested area in the region. Most of these forest stands are usually older than the typical rotation period. As a consequence from these stands timber assortments with a higher value could be obtained. The purpose of this study is to assess the amount of timber assortments and to propose a sorting methodology based on measurements on standing trees within these chestnut stands.Five study areas were selected in the Susa Valley, where forest measurements were realized within sampling plots. Timber assortments obtainable from each coppice shoot were then determined by means of the Bitterlich’s relascope. More than 1.000 timber logs were measured. The data elaboration allowed to assess the timber assortment production of the investigated stands. The proposed methodology makes it possible to better exploit timber assortments. In fact, while usually the whole production from chestnut coppices is directly destined to secondary products, the subdivision into assortments could result in a 20 % of products with higher commercial value. It is important to notice that within these stands no tending operation is currently realized. The definition of qualitative features to classify timber assortments can provide useful suggestions on the main yield targets that could be reached through silvicultural management.

  2. Accurate judgments of neuroticism at zero acquaintance: a question of relevance.

    Science.gov (United States)

    Hirschmüller, Sarah; Egloff, Boris; Schmukle, Stefan C; Nestler, Steffen; Back, Mitja D

    2015-04-01

    Prior studies have consistently found a surprising inaccuracy of people's neuroticism judgments at zero acquaintance. Based on the Realistic Accuracy Model (Funder, 1995), we hypothesize that this is due to a lack of relevance of the situation in which targets are typically observed. Fifty participants were videotaped in a highly trait-relevant (i.e., socially stressful) situation as well as three less relevant situations. An aggregate of self-reports and informant reports was used as the accuracy criterion. Four independent groups of unacquainted observers judged participants' neuroticism based on these short video sequences. Results showed that neuroticism judgments were significantly more accurate for the most trait-relevant situation compared with the other three situations. This finding can be explained using lens model analyses: Only in the most relevant situation did neuroticism predict both visual nervousness and vocal nervousness, both of which in turn predicted neuroticism judgments by lay observers. Our findings show that strangers are sensitive to interindividual differences in neuroticism as long as targets are observed in a trait-relevant situation.

  3. The Influence of Gender Ideology, Victim Resistance, and Spiking a Drink on Acquaintance Rape Attributions.

    Science.gov (United States)

    Angelone, D J; Mitchell, Damon; Smith, Danielle

    2016-02-24

    The current study examined observer's attributions about the victim and perpetrator of an alleged acquaintance rape. Participants included 504 college students from a public university in the northeastern United States who read a brief crime report and completed a series of questionnaires for course credit. While men tended to attribute more blame to the victim than women, gender ideology emerged as a stronger predictor of rape attributions, and some types of sexist beliefs were associated with greater victim blaming and others with less victim blaming. Endorsement of hostile sexism, rape myths, and heterosexual intimacy was generally associated with the attribution of greater victim culpability, as well as less perpetrator culpability, perpetrator criminality, and victim credibility. However, complementary gender differentiation was associated with greater perpetrator culpability and criminality, while protective paternalism was associated with greater victim credibility. Observers attributed lower victim culpability and greater perpetrator criminality when the victim's drink was spiked, and attributed greater perpetrator culpability when the victim verbally resisted the perpetrator's advances. Given the implications that observer attitudes can have on professional and personal support for survivors, as well as juror decision making, the ongoing examination of the complex interplay between the person and situational factors affecting attributions of rape is essential. Sexual assault prevention programs may also benefit from a psychoeducational component that targets reducing traditional gender ideology.

  4. An institutional mechanism for assortment in an ecology of games.

    Directory of Open Access Journals (Sweden)

    Paul E Smaldino

    Full Text Available Recent research has revived Long's "ecology of games" model to analyze how social actors cooperate in the context of multiple political and social games. However, there is still a paucity of theoretical work that considers the mechanisms by which large-scale cooperation can be promoted in a dynamic institutional landscape, in which actors can join new games and leave old ones. This paper develops an agent-based model of an ecology of games where agents participate in multiple public goods games. In addition to contribution decisions, the agents can leave and join different games, and these processes are de-coupled. We show that the payoff for cooperation is greater than for defection when limits to the number of actors per game ("capacity constraints" structure the population in ways that allow cooperators to cluster, independent of any complex individual-level mechanisms such as reputation or punishment. Our model suggests that capacity constraints are one effective mechanism for producing positive assortment and increasing cooperation in an ecology of games. The results suggest an important trade-off between the inclusiveness of policy processes and cooperation: Fully inclusive policy processes reduce the chances of cooperation.

  5. An institutional mechanism for assortment in an ecology of games.

    Science.gov (United States)

    Smaldino, Paul E; Lubell, Mark

    2011-01-01

    Recent research has revived Long's "ecology of games" model to analyze how social actors cooperate in the context of multiple political and social games. However, there is still a paucity of theoretical work that considers the mechanisms by which large-scale cooperation can be promoted in a dynamic institutional landscape, in which actors can join new games and leave old ones. This paper develops an agent-based model of an ecology of games where agents participate in multiple public goods games. In addition to contribution decisions, the agents can leave and join different games, and these processes are de-coupled. We show that the payoff for cooperation is greater than for defection when limits to the number of actors per game ("capacity constraints") structure the population in ways that allow cooperators to cluster, independent of any complex individual-level mechanisms such as reputation or punishment. Our model suggests that capacity constraints are one effective mechanism for producing positive assortment and increasing cooperation in an ecology of games. The results suggest an important trade-off between the inclusiveness of policy processes and cooperation: Fully inclusive policy processes reduce the chances of cooperation.

  6. 76 FR 14115 - Culturally Significant Objects Imported for Exhibition Determinations: “Assorted Greek and Roman...

    Science.gov (United States)

    2011-03-15

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF STATE Culturally Significant Objects Imported for Exhibition Determinations: ``Assorted Greek and Roman Objects... Greek and Roman Objects'' imported from abroad for temporary exhibition within the United States, are...

  7. Actuality of assortment policy in the modern management of retail business enterprise

    Directory of Open Access Journals (Sweden)

    Yefimova Yevheniia

    2016-07-01

    Full Text Available In the result of research it has been found, that the assortment policy defines the course of actions for managing a point-of-sale assortment which foresees clarification and specification of strategic purpose and current tasks; development and grounding of facilities, methods and forms of activity for their achievement; determination of the real resources providing the realization of the plan. The constituents of assortment policy of enterprise of retail business are identified. It is well-proved that with the help of assortment policy achievement of ultimate goals of an enterprise is provided, the constituents of commercial strategy associate together and the possibility of the most effective usage of resources has arrived.

  8. Understanding the Impact of Brand Delistings on Assortment Evaluations and Store Switching and Complaining Intentions

    NARCIS (Netherlands)

    L.M. Sloot (Laurens); P.C. Verhoef (Peter)

    2004-01-01

    textabstractRecently, retailers have begun considering which brands they can delist without reducing customer satisfaction, losing category sales, or increasing store switching behavior. Although several studies have considered assortment reductions, none has explicitly investigated the impact of to

  9. A mechanism for the evolution of altruism among nonkin: positive assortment through environmental feedback.

    Science.gov (United States)

    Pepper, John W; Smuts, Barbara B

    2002-08-01

    The evolution of altruism often requires genetic similarity among interactors. For structured populations in which a social trait affects all group members, this entails positive assortment, meaning that cooperators and noncooperators tend to be segregated into different groups. Several authors have claimed that mechanisms other than common descent can produce positive assortment, but this claim has not been generally accepted. Here, we describe one such mechanism. The process of "environmental feedback" requires only that the cooperative trait affects the quality of the local environment and that individuals are more likely to leave low-quality than high-quality environments. We illustrate this dynamic using an agent-based spatial model of feeding restraint. Depending on parameter settings, results included both positive assortment (required for the evolution of altruism) and negative assortment (required for the evolution of spite). The mechanism of environmental feedback appears to be a general one that could play a role in the evolution of many forms of cooperation.

  10. Recombination and assortment in the macronucleus of Tetrahymena thermophila: a theoretical study by computer simulation.

    Science.gov (United States)

    Doerder, F P; Diblasi, S L

    1984-12-01

    The compound nature of the macronucleus of Tetrahymena thermophila presents multiple opportunities for recombination between genes on the same macronuclear chromosome. Such recombinants should be detectable through their assortment at subsequent amitotic macronuclear divisions. Thus, a macronucleus that is initially AB/ab should produce recombinant assortees of the genotypes Ab/aB. Computer simulation shows that, when the recombination frequency is two or fewer times per cell cycle, recombinant assortees are produced at experimentally measurable frequencies of less than 40%. At higher recombination frequencies, linked genes appear to assort independently. The simulations also show that recombination during macronuclear development can be distinguished from recombination in subsequent cell cycles only if the first appearance of recombinant assortees is 100 or more fissions after conjugation. The use of macronuclear recombination and assortment as a means of mapping macronuclear genes is severely constrained by the large variances in assortment outcomes; with experimentally small sample sizes, such mapping is impossible.

  11. Educational assortative mating and economic inequality: a comparative analysis of three Latin American countries.

    Science.gov (United States)

    Torche, Florencia

    2010-05-01

    Educational assortative mating and economic inequality are likely to be endogenously determined, but very little research exists on their empirical association. Using census data and log-linear and log-multiplicative methods, I compare the patterns of educational assortative mating in Brazil, Chile, and Mexico, and explore the association between marital sorting and earnings inequality across countries. The analysis finds substantial variation in the strength of specific barriers to educational intermarriage between countries, and a close association between these barriers and the earnings gaps across educational categories within countries. This finding suggests an isomorphism between assortative mating and economic inequality. Furthermore, educational marital sorting is remarkably symmetric across gender in spite of the different resources that men and women bring to the union. This study highlights the limitations of using single aggregate measures of spousal educational resemblance (such as the correlation coefficient between spouses' schooling) to capture variation in assortative mating and its relationship with socioeconomic inequality.

  12. Assortativity and leadership emergence from anti-preferential attachment in heterogeneous networks

    CERN Document Server

    Sendiña-Nadal, I; Wang, Z; Havlin, S; Boccaletti, S

    2015-01-01

    Many real-world networks exhibit degree-assortativity, with nodes of similar degree more likely to link to one another. Particularly in social networks, the contribution to the total assortativity varies with degree, featuring a distinctive peak slightly past the average degree. The way traditional models imprint assortativity on top of pre-defined topologies is via degree-preserving link permutations, which however destroy the particular graph's hierarchical traits of clustering. Here, we propose the first generative model which creates heterogeneous networks with scale-free-like properties and tunable realistic assortativity. In our approach, two distinct populations of nodes are added to an initial network seed: one (the followers) that abides by usual preferential rules, and one (the potential leaders) connecting via anti-preferential attachments, i.e. selecting lower degree nodes for their initial links. The latter nodes come to develop a higher average degree, and convert eventually into the final hubs....

  13. Snow Radiance Assimilation Studies

    Science.gov (United States)

    Kim, E. J.; Durand, M. T.; Toure, A.; Margulis, S. A.; Goita, K.; Royer, A.; Lu, H.

    2009-12-01

    Passive microwave-based retrievals of terrestrial snow parameters from satellite observations form a 30-year global record which will continue for the forseeable future. So far, these snow retrievals have been generated primarily by regression-based empirical “inversion” methods based on snapshots in time, and are limited to footprints around 25 km in diameter. Assimilation of microwave radiances into physical land surface models may be used to create a retrieval framework that is inherently self-consistent with respect to model physics as well as a more physically-based approach vs. legacy retrieval/inversion methods. This radiance assimilation approach has been used for years for atmospheric parameters by the operational weather forecasting community with great success, and represents one motivation for our work. A radiance assimilation scheme for snow requires a snowpack land surface model (LSM) coupled to a radiative transfer model (RTM). In previous local-scale studies, Durand, Kim, & Margulis (2008) explored the requirements on LSM model fidelity (i.e., snowpack state information) required in order for the RTM to produce brightness temperatures suitable for radiance assimilation purposes at a local scale, using the well-known Microwave Emission Model for Layered Snowpacks (MEMLS) as the RTM and a combination of Simple SIB (SSiB) and Snow Atmosphere (SAST) as the LSM. They also demonstrated improvement of simulated snow depth through the use of an ensemble Kalman filter scheme at this local scale (2009). This modeling framework reflects another motivation—namely, possibilities for downscaling. Our focus at this stage has been at the local scale where high-quality ground truth data is available in order to evaluate radiance assimilation under a “best case scenario.” The quantitative results then form a benchmark for future assessment of effects such as sparse forcing data, upscaling/downscaling, forest attenuation, and model details. Field data from

  14. Modern state of the assortment drugs for the treatment of vaginal candidosis

    OpenAIRE

    Юлия Валентиновна Левачкова; Татьяна Григорьевна Ярных; Валентина Николаевна Чушенко; Снежана Николаевна Пушок

    2015-01-01

    Today the problem of treatment of vaginal candidosis and creation of effective drugs for the treatment of this disease is actual for modern gynecology and pharmacy.Aim: to explore the structure of the assortment of drugs for the treatment of vaginal candidosis, presented in the Ukrainian pharmaceutical market.Methods: Statistical and marketing methods of investigation of electronic and paper sources of information. Implemented analysis assortment based on the materials of the State Register d...

  15. Fear of acquaintance versus stranger rape as a "master status": towards refinement of the "shadow of sexual assault".

    Science.gov (United States)

    Wilcox, Pamela; Jordan, Carol E; Pritchard, Adam J

    2006-06-01

    Using a sample of 1010 women from a southeastern state university, we explore whether associations between fear of sexual assault and other crime-specific fears vary based on presumed victim-offender relationship. More specifically, we assess the extent to which fear of stranger- and acquaintance-perpetrated sexual assaults differ in the extent to which they are correlated with fear of other crime victimizations. Multivariate logistic regression analysis revealed that both fear of stranger-perpetrated sexual assault and fear of acquaintance-perpetrated sexual assault were positively associated with nearly all other crime-specific fears under examination. However, associations were particularly strong between fear of sexual assault by a stranger and fear of other stranger-perpetrated crimes. Findings have significant implications for how academic institutions should comprehensively address direct and indirect negative influences of violence against college women.

  16. The relationship between intraspecific assortative mating and reproductive isolation between divergent populations

    Institute of Scientific and Technical Information of China (English)

    Daniel I.BOLNICK; Mark KIRKPATRICK

    2012-01-01

    The term'assortative mating' has been applied to describe two very different phenomena:(1) the tendency for individuals to choose phenotypically similar mates from among conspecifics; or (2) the tendency to prefer conspecific over heterospecific mates (behavioral reproductive isolation).Both forms of assortative mating are widespread in nature,but the relationship between these behaviors remains unclear.Namely,it is plausible that a preference for phenotypically similar conspecifics incidentally reduces the probability of mating with phenotypically divergent heterospecifics.We present a model to calculate how the level of reproductive isolation depends on intraspecific assortative mating and the phenotypic divergence between species.For empirically reasonable levels of intraspecific assortment on a single trait axis,we show that strong reproductive isolation requires very substantial phenotypic divergence.We illustrate this point by applying our model to empirical data from threespine stickleback Gasterosteus aculeatus and Darwin's Finches (Geospiza spp).We conclude that typical levels of intraspecific assortment cannot generally be extrapolated to explain levels of interspecitie reproductive isolation.Instead,reproductive isolation between species likely arises from different mate choice behaviors,or multivariate assortative mating.

  17. Linking intra- and interspecific assortative mating: Consequences for asymmetric sexual isolation.

    Science.gov (United States)

    Svensson, Erik I; Nordén, Anna; Waller, John T; Runemark, Anna

    2016-06-01

    Assortative mating is of interest because of its role in speciation and the maintenance of species boundaries. However, we know little about how within-species assortment is related to interspecific sexual isolation. Most previous studies of assortative mating have focused on a single trait in males and females, rather than utilizing multivariate trait information. Here, we investigate how intraspecific assortative mating relates to sexual isolation in two sympatric and congeneric damselfly species (genus Calopteryx). We connect intraspecific assortment to interspecific sexual isolation by combining field observations, mate preference experiments, and enforced copulation experiments. Using canonical correlation analysis, we demonstrate multivariate intraspecific assortment for body size and body shape. Males of the smaller species mate more frequently with heterospecific females than males of the larger species, which showed less attraction to small heterospecific females. Field experiments suggest that sexual isolation asymmetry is caused by male preferences for large heterospecific females, rather than by mechanical isolation due to interspecific size differences or female preferences for large males. Male preferences for large females and male-male competition for high quality females can therefore counteract sexual isolation. This sexual isolation asymmetry indicates that sexual selection currently opposes a species boundary.

  18. The relationship between intraspecific assortative mating and reproductive isolation between divergent populations

    Directory of Open Access Journals (Sweden)

    Daniel I. BOLNICK, Mark KIRKPATRICK

    2012-06-01

    Full Text Available The term 'assortative mating' has been applied to describe two very different phenomena: (1 the tendency for individuals to choose phenotypically similar mates from among conspecifics; or (2 the tendency to prefer conspecific over hete- rospecific mates (behavioral reproductive isolation. Both forms of assortative mating are widespread in nature, but the relationship between these behaviors remains unclear. Namely, it is plausible that a preference for phenotypically similar conspecifics incidentally reduces the probability of mating with phenotypically divergent heterospecifics. We present a model to calculate how the level of reproductive isolation depends on intraspecific assortative mating and the phenotypic divergence between species. For empirically reasonable levels of intraspecific assortment on a single trait axis, we show that strong reproductive isolation requires very substantial phenotypic divergence. We illustrate this point by applying our model to empirical data from threespine stickleback Gasterosteus aculeatus and Darwin’s Finches (Geospiza spp. We conclude that typical levels of intraspecific assortment cannot generally be extrapolated to explain levels of interspecific reproductive isolation. Instead, reproductive isolation between species likely arises from different mate choice behaviors, or multivariate assortative mating [Current Zoology 58 (3: 481–489, 2012].

  19. New meteorological data assimilation model for real-time emergency response

    Energy Technology Data Exchange (ETDEWEB)

    Sugiyama, G.; Chan, S.T.

    1997-09-01

    We are developing a new meteorological data assimilation model for the Atmospheric Release Advisory Capability (ARAC) project at Lawrence Livermore National Laboratory, which provides real-time dose assessments of airborne pollutant releases. The model, ADAPT (Atmospheric Data Assimilation and Parameterization Techniques), builds three-dimensional meteorological fields, which can be used to drive dispersion models or to initialize or evaluate mesoscale models. ADAPT incorporates many new features and substantial improvements over the current ARAC operational models MEDIC/MATHEW, including the use of continuous-terrain variable-resolution grids, the ability to treat assorted meteorological data such as temperatures, pressure, and relative humidity, and a new algorithm to produce mass-consistent wind fields. In this paper, we will describe the main features of the model, current work on a new atmospheric stability parameterization, and show example results.

  20. The cultural context of nondisclosure of alcohol-involved acquaintance rape among Asian American college women: a qualitative study.

    Science.gov (United States)

    Koo, Kelly H; Nguyen, Hong V; Andrasik, Michele P; George, William H

    2015-01-01

    With high college enrollment and increasing alcohol use, Asian American (AA) college women may be at particular risk for experiencing alcohol-involved acquaintance rape. Although AA women have expressed the weakest intentions to report rape when compared to other ethnic groups, cultural factors influencing these intentions remain unexamined. Guided by grounded theory, 17 self-identified AA college women were interviewed about how the average AA college woman would respond to an alcohol-involved acquaintance rape. Despite awareness of benefits of disclosing rape, participants emphasized that nondisclosure would be the normative response. Three themes emerged from participants: institutional, sociocultural, and psychological contexts of nondisclosure. At an institutional level, nondisclosure referenced mental health and police services, which included Asian stereotypes and mistrust of police. Within a sociocultural context, rape nondisclosure focused on negative consequences on relationships with parents and, to a lesser extent, on friendships. Emotional avoidance and not labeling an acquaintance rape as rape were psychological strategies for rape nondisclosure. Participant's conceptualizations of mental and physical health concerns, specifically post-rape concerns, were framed within sociocultural/macrostructural contexts and may not match that of the more individualistic U.S. mainstream conceptualizations of health. Culturally sensitive rape education may be more effective in increasing rape prevention and support.

  1. Assimilation Dynamic Network (ADN) Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The Assimilation Dynamic Network (ADN) is a dynamic inter-processor communication network that spans heterogeneous processor architectures, unifying components,...

  2. Integrated Data Assimilation Architecture Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The Integrated Data Assimilation Architecture (IDAA) is a middleware architecture that facilitates the incorporation of heterogeneous sensing and control devices...

  3. Integrated Data Assimilation Architecture Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The Integrated Data Assimilation Architecture (IDAA) addresses the fundamental problem of command, control, and communications systems interoperability....

  4. Regional Ocean Data Assimilation

    KAUST Repository

    Edwards, Christopher A.

    2015-01-03

    This article reviews the past 15 years of developments in regional ocean data assimilation. A variety of scientific, management, and safety-related objectives motivate marine scientists to characterize many ocean environments, including coastal regions. As in weather prediction, the accurate representation of physical, chemical, and/or biological properties in the ocean is challenging. Models and observations alone provide imperfect representations of the ocean state, but together they can offer improved estimates. Variational and sequential methods are among the most widely used in regional ocean systems, and there have been exciting recent advances in ensemble and four-dimensional variational approaches. These techniques are increasingly being tested and adapted for biogeochemical applications.

  5. Regional ocean data assimilation.

    Science.gov (United States)

    Edwards, Christopher A; Moore, Andrew M; Hoteit, Ibrahim; Cornuelle, Bruce D

    2015-01-01

    This article reviews the past 15 years of developments in regional ocean data assimilation. A variety of scientific, management, and safety-related objectives motivate marine scientists to characterize many ocean environments, including coastal regions. As in weather prediction, the accurate representation of physical, chemical, and/or biological properties in the ocean is challenging. Models and observations alone provide imperfect representations of the ocean state, but together they can offer improved estimates. Variational and sequential methods are among the most widely used in regional ocean systems, and there have been exciting recent advances in ensemble and four-dimensional variational approaches. These techniques are increasingly being tested and adapted for biogeochemical applications.

  6. Immigration, assimilation and growth.

    Science.gov (United States)

    Durkin, J T

    1998-01-01

    "This paper analyzes the welfare effects of immigration and its subsequent effect on ethnic diversity in a model featuring human capital spillovers which depend on the degree of ethnic heterogeneity, variation rates of time preference across individuals and endogenous levels of immigration and assimilation. In the model, an increase in ethnic diversity reduces the spillovers effect for the majority. Nonetheless, immigration can be welfare improving for the majority ethnic group even if it increases the degree of diversity as long as it raises the average human capital level and/or growth rate by increasing the proportion of people with low rates of time preference."

  7. Genome assortment, not serogroup, defines Vibrio cholerae pandemic strains

    Energy Technology Data Exchange (ETDEWEB)

    Brettin, Thomas S [Los Alamos National Laboratory; Bruce, David C [Los Alamos National Laboratory; Challacombe, Jean F [Los Alamos National Laboratory; Detter, John C [Los Alamos National Laboratory; Han, Cliff S [Los Alamos National Laboratory; Munik, A C [Los Alamos National Laboratory; Chertkov, Olga [Los Alamos National Laboratory; Meincke, Linda [Los Alamos National Laboratory; Saunders, Elizabeth [Los Alamos National Laboratory; Choi, Seon Y [SEOUL NATL. UNIV.; Haley, Bradd J [U. MARYLAND; Taviani, Elisa [U. MARYLAND; Jeon, Yoon - Seong [INTL. VACCINE INST. SEOUL; Kim, Dong Wook [INTL. VACCINE INST. SEOUL; Lee, Jae - Hak [SEOUL NATL. UNIV.; Walters, Ronald A [PNNL; Hug, Anwar [NATL. INST. CHOLERIC ENTERIC DIS.; Colwell, Rita R [U. MARYLAND

    2009-01-01

    Vibrio cholerae, the causative agent of cholera, is a bacterium autochthonous to the aquatic environment, and a serious public health threat. V. cholerae serogroup O1 is responsible for the previous two cholera pandemics, in which classical and El Tor biotypes were dominant in the 6th and the current 7th pandemics, respectively. Cholera researchers continually face newly emerging and re-emerging pathogenic clones carrying combinations of new serogroups as well as of phenotypic and genotypic properties. These genotype and phenotype changes have hampered control of the disease. Here we compare the complete genome sequences of 23 strains of V. cholerae isolated from a variety of sources and geographical locations over the past 98 years in an effort to elucidate the evolutionary mechanisms governing genetic diversity and genesis of new pathogenic clones. The genome-based phylogeny revealed 12 distinct V. cholerae phyletic lineages, of which one, designated the V. cholerae core genome (CG), comprises both O1 classical and EI Tor biotypes. All 7th pandemic clones share nearly identical gene content, i.e., the same genome backbone. The transition from 6th to 7th pandemic strains is defined here as a 'shift' between pathogenic clones belonging to the same O1 serogroup, but from significantly different phyletic lineages within the CG clade. In contrast, transition among clones during the present 7th pandemic period can be characterized as a 'drift' between clones, differentiated mainly by varying composition of laterally transferred genomic islands, resulting in emergence of variants, exemplified by V.cholerae serogroup O139 and V.cholerae O1 El Tor hybrid clones that produce cholera toxin of classical biotype. Based on the comprehensive comparative genomics presented in this study it is concluded that V. cholerae undergoes extensive genetic recombination via lateral gene transfer, and, therefore, genome assortment, not serogroup, should be used to

  8. Assimilating seizure dynamics.

    Directory of Open Access Journals (Sweden)

    Ghanim Ullah

    2010-05-01

    Full Text Available Observability of a dynamical system requires an understanding of its state-the collective values of its variables. However, existing techniques are too limited to measure all but a small fraction of the physical variables and parameters of neuronal networks. We constructed models of the biophysical properties of neuronal membrane, synaptic, and microenvironment dynamics, and incorporated them into a model-based predictor-controller framework from modern control theory. We demonstrate that it is now possible to meaningfully estimate the dynamics of small neuronal networks using as few as a single measured variable. Specifically, we assimilate noisy membrane potential measurements from individual hippocampal neurons to reconstruct the dynamics of networks of these cells, their extracellular microenvironment, and the activities of different neuronal types during seizures. We use reconstruction to account for unmeasured parts of the neuronal system, relating micro-domain metabolic processes to cellular excitability, and validate the reconstruction of cellular dynamical interactions against actual measurements. Data assimilation, the fusing of measurement with computational models, has significant potential to improve the way we observe and understand brain dynamics.

  9. Stalking the Perfect Culture Assimilator.

    Science.gov (United States)

    Williams, John H.

    1982-01-01

    Discusses and gives examples of culture assimilators composed of a narrative of an intercultural encounter, four alternative interpretations, and four feedback explanations. Culture assimilators can be used to teach Americans about how to conduct themselves appropriately in France. (Author/BK)

  10. Assimilate Partitioning and Plant Development

    Institute of Scientific and Technical Information of China (English)

    Yong-Ling Ruan; John W.Patrick; Hans Weber

    2010-01-01

    @@ It has been a pleasure to organize this special issue of Molecular Plant on 'Assimilate Partitioning and Plant Development'. Assimilate, a collective term describing organic carbon (C) and nitrogen (N), is of paramount importance for plant development and realization of crop productivity.

  11. Acquaintance ratings of the Big Five personality traits: incremental validity beyond and interactive effects with self-reports in the prediction of workplace deviance.

    Science.gov (United States)

    Kluemper, Donald H; McLarty, Benjamin D; Bing, Mark N

    2015-01-01

    It is widely established that the Big Five personality traits of conscientiousness, agreeableness, and emotional stability are antecedents to workplace deviance (Berry, Ones, & Sackett, 2007). However, these meta-analytic findings are based on self-reported personality traits. A recent meta-analysis by Oh, Wang, and Mount (2011) identified the value of acquaintance-reported personality in the prediction of job performance. The current investigation extends prior work by comparing the validities of self- and acquaintance-reported personality in the prediction of workplace deviance across 2 studies. We also hypothesized and tested an interactive, value-added integration of self- with acquaintance-reported personality using socioanalytic personality theory (R. T. Hogan, 1991). Both studies assessed self- and acquaintance-rated Big Five traits, along with supervisor-rated workplace deviance. However, the studies varied the measures of workplace deviance, and the 2nd study also included a self-rated workplace deviance criterion for additional comparison. Across both studies, the traits of conscientiousness and agreeableness were strong predictors of workplace deviance, and acquaintance-reported personality provided incremental validity beyond self-reports. Additionally, acquaintance-reported conscientiousness and agreeableness moderated the prediction of workplace deviance by interacting with the corresponding self-reported traits. Implications for personality theory and measurement are discussed along with applications for practice.

  12. Nonlinear data assimilation

    CERN Document Server

    Van Leeuwen, Peter Jan; Reich, Sebastian

    2015-01-01

    This book contains two review articles on nonlinear data assimilation that deal with closely related topics but were written and can be read independently. Both contributions focus on so-called particle filters. The first contribution by Jan van Leeuwen focuses on the potential of proposal densities. It discusses the issues with present-day particle filters and explorers new ideas for proposal densities to solve them, converging to particle filters that work well in systems of any dimension, closing the contribution with a high-dimensional example. The second contribution by Cheng and Reich discusses a unified framework for ensemble-transform particle filters. This allows one to bridge successful ensemble Kalman filters with fully nonlinear particle filters, and allows a proper introduction of localization in particle filters, which has been lacking up to now.

  13. METHODOLOGY OF KNOWLEDGE RESOURCES AUDIT FOR FORMATION OF PHARMACY ORGANIZATION ASSORTMENT

    Directory of Open Access Journals (Sweden)

    I. M. Razdorskaya

    2015-01-01

    Full Text Available The timeliness of this subject is conditioned by the increase of a role of knowledge in pharmacy organizations (PO management, significance increase of non-material assets in a competition on the pharmaceutical market. The development and substantiation of methodology of knowledge resources audit significance on the example of drug assortment formation for allergic rhinitis treatment. We have used sociological, statistic, expert methods of a study. Close attention was paid to the method of target management, construction of target tree. The construction of the target tree of the knowledge resources audit was based on the main target establishment, targets of the first level, and eight subtargets. We have offered new special positions of assortment formation. “Formation of consumers’ loyalty” is the target of the first level, subtargets “Analysis of clients preferences”, “Transformation of clients preferences”, “Positioning of consumers by the compliance degree”. We have determined the relevance significance by the main target achievement – rational assortment formation. We have shown that the achievement of the first level target “Formation of consumers’  loyalty” conduce the achievement of the main target by 40%. The analysis of the current assortment and a process of assortment upgrading guarantee the achievement of the target by 30% each. The methodology is prospective for knowledge resources audit by the principal business processes of pharmacy organizations.  

  14. The Cognitive Social Network in Dreams: Transitivity, Assortativity, and Giant Component Proportion Are Monotonic.

    Science.gov (United States)

    Han, Hye Joo; Schweickert, Richard; Xi, Zhuangzhuang; Viau-Quesnel, Charles

    2016-04-01

    For five individuals, a social network was constructed from a series of his or her dreams. Three important network measures were calculated for each network: transitivity, assortativity, and giant component proportion. These were monotonically related; over the five networks as transitivity increased, assortativity increased and giant component proportion decreased. The relations indicate that characters appear in dreams systematically. Systematicity likely arises from the dreamer's memory of people and their relations, which is from the dreamer's cognitive social network. But the dream social network is not a copy of the cognitive social network. Waking life social networks tend to have positive assortativity; that is, people tend to be connected to others with similar connectivity. Instead, in our sample of dream social networks assortativity is more often negative or near 0, as in online social networks. We show that if characters appear via a random walk, negative assortativity can result, particularly if the random walk is biased as suggested by remote associations.

  15. 'Prudent habitat choice': a novel mechanism of size-assortative mating.

    Science.gov (United States)

    Taborsky, B; Guyer, L; Demus, P

    2014-06-01

    Assortative mating, an ubiquitous form of nonrandom mating, strongly impacts Darwinian fitness and can drive biological diversification. Despite its ecological and evolutionary importance, the behavioural processes underlying assortative mating are often unknown, and in particular, mechanisms not involving mate choice have been largely ignored so far. Here, we propose that assortative mating can arise from 'prudent habitat choice', a general mechanism that acts under natural selection, and that it can occur despite a complete mixing of phenotypes. We show that in the cichlid Eretmodus cyanostictus size-assortative mating ensues, because individuals of weaker competitive ability ignore high-quality but strongly competed habitat patches. Previous studies showed that in E. cyanostictus, size-based mate preferences are absent. By field and laboratory experiments, here we showed that (i) habitat quality and body size are correlated in this species; (ii) territories with more stone cover are preferred by both sexes in the absence of competition; and (iii) smaller fish prudently occupy vacant territories of worse quality than do larger fish. Prudent habitat choice is likely to be a widespread mechanism of assortative mating, as both preferences for and dominance-based access to high-quality habitats are generic phenomena in animals.

  16. Inducing self-organized criticality in a network toy model by neighborhood assortativity

    Science.gov (United States)

    Allen-Perkins, Alfonso; Galeano, Javier; Pastor, Juan Manuel

    2016-11-01

    Complex networks are a recent type of framework used to study complex systems with many interacting elements, such as self-organized criticality (SOC). The network nodes' tendency to link to other nodes of similar type is characterized by assortative mixing. Real networks exhibit assortative mixing by vertex degree, however, typical random network models, such as the Erdős-Rényi or the Barabási-Albert model, show no assortative arrangements. In this paper we introduce the notion of neighborhood assortativity as the tendency of a node to belong to a community (its neighborhood) showing an average property similar to its own. Imposing neighborhood assortative mixing by degree in a network toy model, SOC dynamics can be found. These dynamics are driven only by the network topology. The long-range correlations resulting from criticality have been characterized by means of fluctuation analysis and show an anticorrelation in the node's activity. The model contains only one parameter and its statistics plots for different values of the parameter can be collapsed into a single curve. The simplicity of the model allows us to perform numerical simulations and also to study analytically the statistics for a specific value of the parameter, making use of the Markov chains.

  17. Phenotypic assortment in wild primate networks: implications for the dissemination of information.

    Science.gov (United States)

    Carter, Alecia J; Lee, Alexander E G; Marshall, Harry H; Ticó, Miquel Torrents; Cowlishaw, Guy

    2015-05-01

    Individuals' access to social information can depend on their social network. Homophily-a preference to associate with similar phenotypes-may cause assortment within social networks that could preclude information transfer from individuals who generate information to those who would benefit from acquiring it. Thus, understanding phenotypic assortment may lead to a greater understanding of the factors that could limit the transfer of information between individuals. We tested whether there was assortment in wild baboon (Papio ursinus) networks, using data collected from two troops over 6 years for six phenotypic traits-boldness, age, dominance rank, sex and the propensity to generate/exploit information-using two methods for defining a connection between individuals-time spent in proximity and grooming. Our analysis indicated that assortment was more common in grooming than proximity networks. In general, there was homophily for boldness, age, rank and the propensity to both generate and exploit information, but heterophily for sex. However, there was considerable variability both between troops and years. The patterns of homophily we observed for these phenotypes may impede information transfer between them. However, the inconsistency in the strength of assortment between troops and years suggests that the limitations to information flow may be quite variable.

  18. Using Social Network Methods to Test for Assortment of Prosociality among Korean High School Students.

    Science.gov (United States)

    Kim, Jun-Hong; Holman, Darryl J; Goodreau, Steven M

    2015-01-01

    Assortative interaction among altruistic individuals is a necessary condition for the evolution of cooperation. The requirement for assortment holds regardless of whether a meta-population is subdivided into distinct and isolated subgroups or has ephemeral boundaries with a high migration rate. The assumption, however, is rarely tested directly. In this paper, we develop a method to test for assortment of prosociality in network-structured data. The method is applied to a friendship network collected from 238 Korean students attending the same high school. A mixing matrix was used to explore the presence of assortative friendship among more prosocial individuals. An exponential random graph model of network structure that accounts for additional observed relational propensities (higher-than-expected number of people nominating no friends) and sampling constraints (upper bound on friendship nominations) found that individual prosociality predicted friendship propensity, and that individuals with higher prosocial scores had a higher probability of befriending other more prosocial individuals. The results reveal that a considerable level of assortment of prosociality characterizes this population.

  19. Inducing self-organized criticality in a network toy model by neighborhood assortativity.

    Science.gov (United States)

    Allen-Perkins, Alfonso; Galeano, Javier; Pastor, Juan Manuel

    2016-11-01

    Complex networks are a recent type of framework used to study complex systems with many interacting elements, such as self-organized criticality (SOC). The network nodes' tendency to link to other nodes of similar type is characterized by assortative mixing. Real networks exhibit assortative mixing by vertex degree, however, typical random network models, such as the Erdős-Rényi or the Barabási-Albert model, show no assortative arrangements. In this paper we introduce the notion of neighborhood assortativity as the tendency of a node to belong to a community (its neighborhood) showing an average property similar to its own. Imposing neighborhood assortative mixing by degree in a network toy model, SOC dynamics can be found. These dynamics are driven only by the network topology. The long-range correlations resulting from criticality have been characterized by means of fluctuation analysis and show an anticorrelation in the node's activity. The model contains only one parameter and its statistics plots for different values of the parameter can be collapsed into a single curve. The simplicity of the model allows us to perform numerical simulations and also to study analytically the statistics for a specific value of the parameter, making use of the Markov chains.

  20. Assortative social learning and its implications for human (and animal?) societies.

    Science.gov (United States)

    Katsnelson, Edith; Lotem, Arnon; Feldman, Marcus W

    2014-07-01

    Choosing from whom to learn is an important element of social learning. It affects learner success and the profile of behaviors in the population. Because individuals often differ in their traits and capabilities, their benefits from different behaviors may also vary. Homophily, or assortment, the tendency of individuals to interact with other individuals with similar traits, is known to affect the spread of behaviors in humans. We introduce models to study the evolution of assortative social learning (ASL), where assorting on a trait acts as an individual-specific mechanism for filtering relevant models from which to learn when that trait varies. We show that when the trait is polymorphic, ASL may maintain a stable behavioral polymorphism within a population (independently of coexistence with individual learning in a population). We explore the evolution of ASL when assortment is based on a nonheritable or partially heritable trait, and when ASL competes with different non-ASL strategies: oblique (learning from the parental generation) and vertical (learning from the parent). We suggest that the tendency to assort may be advantageous in the context of social learning, and that ASL might be an important concept for the evolutionary theory of social learning.

  1. THE IMPROVING OF ASSORTMENT BY «BUMFA GROUP» IN CHERKESSK

    Directory of Open Access Journals (Sweden)

    Gayduk V. I.

    2015-09-01

    Full Text Available The article presents and analyzes the assortment of "Bumfa Group" with the methods of ABC analysis, XYZ-analysis. It gives the description of the goods offered by the organization, its customers and its main competitors. The profile of competitive advantages and disadvantages is compiled. It presents the results of marketing research of consumers acquiring products offered by LLC "Bumfa Group" - the goods in terms of popularity, the factors influencing the decision to purchase, customers’ satisfaction in price, packaging and product quality, the results of customers’choice of new products to update the assortment, customers’ satisfaction in volume of incoming advertising information about the products of "Bumfa Group." The necessity to optimize the assortment of the organization is founded. To achieve this aim we developed a project to introduce new products in the range of goods - wet wipes for office equipment. The characteristics of the new product, the production plan and performance indicators of the project are supplied

  2. Geographically selective assortment of cycles in pandemics: meta-analysis of data collected by Chizhevsky.

    Science.gov (United States)

    Gumarova, L; Cornélissen, G; Hillman, D; Halberg, F

    2013-10-01

    In the incidence patterns of cholera, diphtheria and croup during the past when they were of epidemic proportions, we document a set of cycles (periods), one of which was reported and discussed by A. L. Chizhevsky in the same data with emphasis on the mirroring in human disease of the ~11-year sunspot cycle. The data in this study are based on Chizhevsky’s book The Terrestrial Echo of Solar Storms and on records from the World Health Organization. For meta-analysis, we used the extended linear and nonlinear cosinor. We found a geographically selective assortment of various cycles characterizing the epidemiology of infections, which is the documented novel topic of this paper, complementing the earlier finding in the 21st century or shortly before, of a geographically selective assortment of cycles characterizing human sudden cardiac death. Solar effects, if any, interact with geophysical processes in contributing to this assortment.

  3. Assortative marriages by body mass index have increased simultaneously with the obesity epidemic

    DEFF Research Database (Denmark)

    Adeltoft, Teresa Ajslev; Ängquist, Lars Henrik; Silventoinen, Karri;

    2012-01-01

    Background: The genetic predisposition to obesity may have contributed to the obesity epidemic through assortative mating. We investigated whether spouses were positively assorted by body mass index (BMI; = kg/m(2)) in late childhood, and whether changes in assorted marriage by upper BMI......-percentiles occurred during the obesity epidemic. Methods: In the Copenhagen School Health Records Register (CSHRR) boys and girls with measures of BMI at age 13 years later became 37,792 spousal-pairs who married between 1945 and 2010. Trends in the spousal BMI correlations using sex-, age-, and birth cohort......-specific BMI z-scores across time were investigated. Odds ratios (ORs) of marriage among spouses both with BMI z-scores >90th or >95th percentile compared with marriage among spouses ≤90th percentile were analyzed for marriages entered during the years prior to (1945-1970), and during the obesity epidemic...

  4. Assortative mating among Lake Malawi cichlid fish populations is not simply predictable from male nuptial colour

    Directory of Open Access Journals (Sweden)

    Taylor Martin I

    2009-03-01

    Full Text Available Abstract Background Research on the evolution of reproductive isolation in African cichlid fishes has largely focussed on the role of male colours and female mate choice. Here, we tested predictions from the hypothesis that allopatric divergence in male colour is associated with corresponding divergence in preference. Methods We studied four populations of the Lake Malawi Pseudotropheus zebra complex. We predicted that more distantly-related populations that independently evolved similar colours would interbreed freely while more closely-related populations with different colours mate assortatively. We used microsatellite genotypes or mesh false-floors to assign paternity. Fisher's exact tests as well as Binomial and Wilcoxon tests were used to detect if mating departed from random expectations. Results Surprisingly, laboratory mate choice experiments revealed significant assortative mating not only between population pairs with differently coloured males, but between population pairs with similarly-coloured males too. This suggested that assortative mating could be based on non-visual cues, so we further examined the sensory basis of assortative mating between two populations with different male colour. Conducting trials under monochromatic (orange light, intended to mask the distinctive male dorsal fin hues (blue v orange of these populations, did not significantly affect the assortative mating by female P. emmiltos observed under control conditions. By contrast, assortative mating broke down when direct contact between female and male was prevented. Conclusion We suggest that non-visual cues, such as olfactory signals, may play an important role in mate choice and behavioural isolation in these and perhaps other African cichlid fish. Future speciation models aimed at explaining African cichlid radiations may therefore consider incorporating such mating cues in mate choice scenarios.

  5. Co-assortment in integron-associated gene cassette assemblages in environmental DNA samples

    Directory of Open Access Journals (Sweden)

    Michael Carolyn A

    2010-08-01

    Full Text Available Abstract Background It has been shown that integron-associated gene cassettes exist largely in tandem arrays of variable size, ranging from antibiotic resistance arrays of three to five cassettes up to arrays of more than 100 cassettes associated with the vibrios. Further, the ecology of the integron/gene cassette system has been investigated by showing that very many different cassettes are present in even small environmental samples. In this study, we seek to extend the ecological perspective on the integron/gene cassette system by investigating the way in which this diverse cassette metagenome is apportioned amongst prokaryote lineages in a natural environment. Results We used a combination of PCR-based techniques applied to environmental DNA samples and ecological analytical techniques to establish co-assortment within cassette populations, then establishing the relationship between this co-assortment and genomic structures. We then assessed the distribution of gene cassettes within the environment and found that the majority of gene cassettes existed in large co-assorting groups. Conclusions Our results suggested that the gene cassette diversity of a relatively pristine sampling environment was structured into co-assorting groups, predominantly containing large numbers of cassettes per group. These co-assorting groups consisted of different gene cassettes in stoichiometric relationship. Conservatively, we then attributed co-assorting cassettes to the gene cassette complements of single prokaryote lineages and by implication, to large integron-associated arrays. The prevalence of large arrays in the environment raises new questions about the assembly, maintenance and utility of large cassette arrays in prokaryote populations.

  6. From sparse to dense and from assortative to disassortative in online social networks

    CERN Document Server

    Li, Menghui; Gong, Xiaofeng; Li, Kun; Wu, Jinshan; Di, Zengru; Lai, Choy-Heng

    2013-01-01

    In this paper, inspired by the analysis on several empirical online social networks, we propose a simple reaction-diffusion-like coevolving model, in which individuals are activated to create links based on their states influenced by local dynamics and their own intension. It is shown that the model can reproduce the remarkable properties observed in empirical online social networks, particularly, that the assortative coefficients are neural or negative and the power law exponents are smaller than 2. Moreover, we demonstrate that, under feasible conditions, the modeling networks naturally convert from assortative to disassortative, and from sparse to dense. Our model is helpful for understanding the formation and evolution of online social networks.

  7. Effect of assortative mixing in the second-order Kuramoto model

    CERN Document Server

    Peron, Thomas K DM; Rodrigues, Francisco A; Kurths, Jürgen

    2015-01-01

    In this paper we analyze the second-order Kuramoto model presenting a positive correlation between the heterogeneity of the connections and the natural frequencies in scale-free networks. We numerically show that discontinuous transitions emerge not just in disassortative but also in assortative networks, in contrast with the first-order model. We also find that the effect of assortativity on network synchronization can be compensated by adjusting the phase damping. Our results show that it is possible to control collective behavior of damped Kuramoto oscillators by tuning the network structure or by adjusting the dissipation related to the phases movement.

  8. Determination of timber assortments obtainable from coppice chestnut stands (Susa Valley, Northern Italy)

    OpenAIRE

    Nosenzo A

    2007-01-01

    Chestnut (Castanea sativa L.) coppice stands currently cover about 195.000 ha of Piedmont (North-Western Italy) surface, corresponding to 22.4 % of the overall forested area in the region. Most of these forest stands are usually older than the typical rotation period. As a consequence from these stands timber assortments with a higher value could be obtained. The purpose of this study is to assess the amount of timber assortments and to propose a sorting methodology based on measurements on s...

  9. Global Data Assimilation System (GDAS)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Global Data Assimilation System (GDAS) is the system used by the Global Forecast System (GFS) model to place observations into a gridded model space for the...

  10. Data assimilation in hydrological modelling

    DEFF Research Database (Denmark)

    Drecourt, Jean-Philippe

    Data assimilation is an invaluable tool in hydrological modelling as it allows to efficiently combine scarce data with a numerical model to obtain improved model predictions. In addition, data assimilation also provides an uncertainty analysis of the predictions made by the hydrological model...... with model non-linearities and biased errors. A literature review analyzes the most popular techniques and their application in hydrological modelling. Since bias is an important problem in groundwater modelling, two bias aware Kalman filters have been implemented and compared using an artificial test case....... In this thesis, the Kalman filter is used for data assimilation with a focus on groundwater modelling. However the developed techniques are general and can be applied also in other modelling domains. Modelling involves conceptualization of the processes of Nature. Data assimilation provides a way to deal...

  11. WAVE ASSIMILATION AND NUMERICAL PREDICTION

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    An adjoint variational method for wave data assimilation in the LAGFD-WAM wave model is proposed. The adjoint equation of the wavenumber energy spectrum balance equation is derived. And fortunately, its characteristic equations are the same as those in the LAGFD-WAM wave model. Simple experiments on the functional optimization and assimilation effectiveness during the prediction period indicated that the adjoint variational method is effective for wave assimilation and that the initial optimization of the wave model is important for the short-range wave prediction. All of this is under the assumption that the wind field is accurate, the method is the important first step for combined wind and wave data assimilation systems.

  12. Global Land Data Assimilation System

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The goal of the Global Land Data Assimilation System (GLDAS) is to ingest satellite- and ground-based observational data products, using advanced land surface...

  13. Data Assimilation in Ocean Prediction

    Science.gov (United States)

    2016-06-07

    contour plots of the estimates of the sea surface height ( SSH ) for the top layer after 5 Topex/ Poseidon simulated repeat cycles. The top plot in Figure... SSH ): Top: SSH for the actual truth; middle: SSH with no data assimilation; and bottom: SSH with data assimilation from satellite altimetry. Darker...regions are deeper, lighter regions are higher. 2: RMSE of the SSH for the top two layers. The lower curve is the RMSE for the surface layer while the

  14. CONSIDERATIONS UPON ASSIMILATED ADMINISTRATIVE ACTS

    OpenAIRE

    2011-01-01

    Although the classic administrative courts know as object the acts against classic administrative acts, it should not be lost sight of the assimilated administrative acts, which also may be subject to acts in this litigation. Taking in consideration this category of acts, this study will examine the documents falling into this category and the impact that such acts have on public authorities. Given the significant increase of administrative cases that have as object assimilated administrative...

  15. The genetic correlation between height and IQ: shared genes or assortative mating?

    Directory of Open Access Journals (Sweden)

    Matthew C Keller

    2013-04-01

    Full Text Available Traits that are attractive to the opposite sex are often positively correlated when scaled such that scores increase with attractiveness, and this correlation typically has a genetic component. Such traits can be genetically correlated due to genes that affect both traits ("pleiotropy" and/or because assortative mating causes statistical correlations to develop between selected alleles across the traits ("gametic phase disequilibrium". In this study, we modeled the covariation between monozygotic and dizygotic twins, their siblings, and their parents (total N = 7,905 to elucidate the nature of the correlation between two potentially sexually selected traits in humans: height and IQ. Unlike previous designs used to investigate the nature of the height-IQ correlation, the present design accounts for the effects of assortative mating and provides much less biased estimates of additive genetic, non-additive genetic, and shared environmental influences. Both traits were highly heritable, although there was greater evidence for non-additive genetic effects in males. After accounting for assortative mating, the correlation between height and IQ was found to be almost entirely genetic in nature. Model fits indicate that both pleiotropy and assortative mating contribute significantly and about equally to this genetic correlation.

  16. The Genetic Correlation between Height and IQ: Shared Genes or Assortative Mating?

    Science.gov (United States)

    Keller, Matthew C.; Garver-Apgar, Christine E.; Wright, Margaret J.; Martin, Nicholas G.; Corley, Robin P.; Stallings, Michael C.; Hewitt, John K.; Zietsch, Brendan P.

    2013-01-01

    Traits that are attractive to the opposite sex are often positively correlated when scaled such that scores increase with attractiveness, and this correlation typically has a genetic component. Such traits can be genetically correlated due to genes that affect both traits (“pleiotropy”) and/or because assortative mating causes statistical correlations to develop between selected alleles across the traits (“gametic phase disequilibrium”). In this study, we modeled the covariation between monozygotic and dizygotic twins, their siblings, and their parents (total N = 7,905) to elucidate the nature of the correlation between two potentially sexually selected traits in humans: height and IQ. Unlike previous designs used to investigate the nature of the height–IQ correlation, the present design accounts for the effects of assortative mating and provides much less biased estimates of additive genetic, non-additive genetic, and shared environmental influences. Both traits were highly heritable, although there was greater evidence for non-additive genetic effects in males. After accounting for assortative mating, the correlation between height and IQ was found to be almost entirely genetic in nature. Model fits indicate that both pleiotropy and assortative mating contribute significantly and about equally to this genetic correlation. PMID:23593038

  17. Assortativity and leadership emerge from anti-preferential attachment in heterogeneous networks

    Science.gov (United States)

    Sendiña-Nadal, I.; Danziger, M. M.; Wang, Z.; Havlin, S.; Boccaletti, S.

    2016-02-01

    Real-world networks have distinct topologies, with marked deviations from purely random networks. Many of them exhibit degree-assortativity, with nodes of similar degree more likely to link to one another. Though microscopic mechanisms have been suggested for the emergence of other topological features, assortativity has proven elusive. Assortativity can be artificially implanted in a network via degree-preserving link permutations, however this destroys the graph’s hierarchical clustering and does not correspond to any microscopic mechanism. Here, we propose the first generative model which creates heterogeneous networks with scale-free-like properties in degree and clustering distributions and tunable realistic assortativity. Two distinct populations of nodes are incrementally added to an initial network by selecting a subgraph to connect to at random. One population (the followers) follows preferential attachment, while the other population (the potential leaders) connects via anti-preferential attachment: they link to lower degree nodes when added to the network. By selecting the lower degree nodes, the potential leader nodes maintain high visibility during the growth process, eventually growing into hubs. The evolution of links in Facebook empirically validates the connection between the initial anti-preferential attachment and long term high degree. In this way, our work sheds new light on the structure and evolution of social networks.

  18. The Changing Importance of White Women's Economic Prospects for Assortative Mating

    Science.gov (United States)

    Sweeney, Megan M.; Cancian, Maria

    2004-01-01

    Given recent changes in the labor force participation and economic standing of women, we ask whether a woman's position in the labor market has become a more important determinant of her position in the marriage market. Unlike much prior research on trends over time in assortative mating, we take an individual-level approach to the analysis and…

  19. Intergenerational income mobility – top incomes and assortative mating in Denmark

    DEFF Research Database (Denmark)

    Hussain, M. Azhar; Bonke, Jens; Munk, Martin D.

    2011-01-01

    This article investigates intergenerational income mobility among top-income people in Denmark focusing on the impact of assortative mating. Earnings and capital income are the variables of interest included in the analyzes testing the hypothesis that both wealth and social heritage are transferred...

  20. Spotting altruistic dictator game players and mingling with them : the elective assortation of classmates

    NARCIS (Netherlands)

    Pradel, Julia; Euler, Harald A.; Fetchenhauer, Detlef

    2009-01-01

    Altruism can evolve through assortation if the selfish advantage of egoistic individuals is outcompeted by the benefits of mutual cooperation between altruists. This selection process is possible if (a) individuals can distinguish altruists from egoists and (b) altruists cooperate electively with ot

  1. Genetic and socioeconomic study of mate choice in Latinos reveals novel assortment patterns.

    Science.gov (United States)

    Zou, James Y; Park, Danny S; Burchard, Esteban G; Torgerson, Dara G; Pino-Yanes, Maria; Song, Yun S; Sankararaman, Sriram; Halperin, Eran; Zaitlen, Noah

    2015-11-01

    Nonrandom mating in human populations has important implications for genetics and medicine as well as for economics and sociology. In this study, we performed an integrative analysis of a large cohort of Mexican and Puerto Rican couples using detailed socioeconomic attributes and genotypes. We found that in ethnically homogeneous Latino communities, partners are significantly more similar in their genomic ancestries than expected by chance. Consistent with this, we also found that partners are more closely related--equivalent to between third and fourth cousins in Mexicans and Puerto Ricans--than matched random male-female pairs. Our analysis showed that this genomic ancestry similarity cannot be explained by the standard socioeconomic measurables alone. Strikingly, the assortment of genomic ancestry in couples was consistently stronger than even the assortment of education. We found enriched correlation of partners' genotypes at genes known to be involved in facial development. We replicated our results across multiple geographic locations. We discuss the implications of assortment and assortment-specific loci on disease dynamics and disease mapping methods in Latinos.

  2. The short- and long-term impact of an assortment reduction on category sales

    NARCIS (Netherlands)

    Sloot, Laurens M.; Fok, Dennis; Verhoef, Peter C.

    2006-01-01

    In a collaborative study with a major Dutch retailer, the authors assess the short- and long-term effects of a 25% item reduction on-category sales. On an aggregate level, a major assortment reduction can lead to substantive short-term category sales losses but only a weak negative long-term categor

  3. Effective Assimilation of Global Precipitation

    Science.gov (United States)

    Lien, G.; Kalnay, E.; Miyoshi, T.; Huffman, G. J.

    2012-12-01

    Assimilating precipitation observations by modifying the moisture and sometimes temperature profiles has been shown successful in forcing the model precipitation to be close to the observed precipitation, but only while the assimilation is taking place. After the forecast start, the model tends to "forget" the assimilation changes and lose their extra skill after few forecast hours. This suggests that this approach is not an efficient way to modify the potential vorticity field, since this is the variable that the model would remember. In this study, the ensemble Kalman filter (EnKF) method is used to effectively change the potential vorticity field by allowing ensemble members with better precipitation to receive higher weights. In addition to using an EnKF, two other changes in the precipitation assimilation process are proposed to solve the problems related to the highly non-Gaussian nature of the precipitation variable: a) transform precipitation into a Gaussian distribution based on its climatological distribution, and b) only assimilate precipitation at the location where some ensemble members have positive precipitation. The idea is first tested by the observing system simulation experiments (OSSEs) using SPEEDY, a simplified but realistic general circulation model. When the global precipitation is assimilated in addition to conventional rawinsonde observations, both the analyses and the medium range forecasts are significantly improved as compared to only having rawinsonde observations. The improvement is much reduced when only modifying the moisture field with the same approach, which shows the importance of the error covariance between precipitation and all other model variables. The effect of precipitation assimilation is larger in the Southern Hemisphere than that in the Northern Hemisphere because the Northern Hemisphere analyses are already accurate as a result of denser rawinsonde stations. Assimilation of precipitation using a more comprehensive

  4. Lexical frequency and voice assimilation.

    Science.gov (United States)

    Ernestus, Mirjam; Lahey, Mybeth; Verhees, Femke; Baayen, R Harald

    2006-08-01

    Acoustic duration and degree of vowel reduction are known to correlate with a word's frequency of occurrence. The present study broadens the research on the role of frequency in speech production to voice assimilation. The test case was regressive voice assimilation in Dutch. Clusters from a corpus of read speech were more often perceived as unassimilated in lower-frequency words and as either completely voiced (regressive assimilation) or, unexpectedly, as completely voiceless (progressive assimilation) in higher-frequency words. Frequency did not predict the voice classifications over and above important acoustic cues to voicing, suggesting that the frequency effects on the classifications were carried exclusively by the acoustic signal. The duration of the cluster and the period of glottal vibration during the cluster decreased while the duration of the release noises increased with frequency. This indicates that speakers reduce articulatory effort for higher-frequency words, with some acoustic cues signaling more voicing and others less voicing. A higher frequency leads not only to acoustic reduction but also to more assimilation.

  5. Assimilation of Unusual Carbon Compounds

    Science.gov (United States)

    Middelhoven, Wouter J.

    Yeast taxa traditionally are distinguished by growth tests on several sugars and organic acids. During the last decades it became apparent that many yeast species assimilate a much greater variety of naturally occurring carbon compounds as sole source of carbon and energy. These abilities are indicative of a greater role of yeasts in the carbon cycle than previously assumed. Especially in acidic soils and other habitats, yeasts may play a role in the degradation of carbon compounds. Such compounds include purines like uric acid and adenine, aliphatic amines, diamines and hydroxyamines, phenolics and other benzene compounds and polysaccharides. Assimilation of purines and amines is a feature of many ascomycetes and basidiomycetes. However, benzene compounds are degraded by only a few ascomycetous yeasts (e.g. the Stephanoascus/ Blastobotrys clade and black yeastlike fungi) but by many basidiomycetes, e.g. Filobasidiales, Trichosporonales, red yeasts producing ballistoconidia and related species, but not by Tremellales. Assimilation of polysaccharides is wide-spread among basidiomycetes

  6. Data assimilation in hydrological modelling

    DEFF Research Database (Denmark)

    Drecourt, Jean-Philippe

    Data assimilation is an invaluable tool in hydrological modelling as it allows to efficiently combine scarce data with a numerical model to obtain improved model predictions. In addition, data assimilation also provides an uncertainty analysis of the predictions made by the hydrological model...... with model non-linearities and biased errors. A literature review analyzes the most popular techniques and their application in hydrological modelling. Since bias is an important problem in groundwater modelling, two bias aware Kalman filters have been implemented and compared using an artificial test case...

  7. Storm surge variational assimilation model

    Directory of Open Access Journals (Sweden)

    Shi-li HUANG

    2010-06-01

    Full Text Available To eliminate errors caused by uncertainty of parameters and further improve capability of storm surge forecasting, the variational data assimilation method is applied to the storm surge model based on unstructured grid with high spatial resolution. The method can effectively improve the forecasting accuracy of storm surge induced by typhoon through controlling wind drag force coefficient parameter. The model is first theoretically validated with synthetic data. Then, the real storm surge process induced by the TC 0515 typhoon is forecasted by the variational data assimilation model, and results show the feasibility of practical application.

  8. Two types of parasitic assimilation

    Directory of Open Access Journals (Sweden)

    Peter Jurgec

    2013-02-01

    Full Text Available This paper shows that consonant harmony and parasitic vowel harmony are more similar than previously assumed. I provide a unified and restrictive analysis of parasitic assimilation using feature spreading constraints. In particular, I attribute the differences between the attested and unattested patterns to two types of markedness constraints—alignment and agreement.

  9. Assimilation of Unusual Carbon Compounds

    NARCIS (Netherlands)

    Middelhoven, W.J.

    2009-01-01

    Yeast taxa traditionally are distinguished by growth tests on several sugars and organic acids. During the last decades it became apparent that many yeast species assimilate a much greater variety of naturally occurring carbon compounds as sole source of carbon and energy. These abilities are indica

  10. The Phonological Assimilation of Borrowing.

    Science.gov (United States)

    Suleiman, Saleh M.

    Linguistic borrowing from English to Jordanian Arabic at the lexical level is described, focusing on phonology and the extent to which Jordanian Arabic has affected the phonetic structure of English loans assimilated partially or completely into it. Conspicuous distinctive sound features in the two languages that may affect non-native speakers'…

  11. Justifying Educational Acquaintance with the Moral Horrors of History on Psycho-Social Grounds: "Facing History and Ourselves" in Critical Perspective

    Science.gov (United States)

    Maxwell, Bruce

    2008-01-01

    This paper challenges a pervasive curricular justification for educationally acquainting young people with stories of genocide and other moral horrors from history. According to this justification, doing so favours the development of psycho-social soft skills connected with interpersonal awareness and the establishment and maintenance of positive…

  12. From sparse to dense and from assortative to disassortative in online social networks.

    Science.gov (United States)

    Li, Menghui; Guan, Shuguang; Wu, Chensheng; Gong, Xiaofeng; Li, Kun; Wu, Jinshan; Di, Zengru; Lai, Choy-Heng

    2014-01-01

    Inspired by the analysis of several empirical online social networks, we propose a simple reaction-diffusion-like coevolving model, in which individuals are activated to create links based on their states, influenced by local dynamics and their own intention. It is shown that the model can reproduce the remarkable properties observed in empirical online social networks; in particular, the assortative coefficients are neutral or negative, and the power law exponents γ are smaller than 2. Moreover, we demonstrate that, under appropriate conditions, the model network naturally makes transition(s) from assortative to disassortative, and from sparse to dense in their characteristics. The model is useful in understanding the formation and evolution of online social networks.

  13. From sparse to dense and from assortative to disassortative in online social networks

    Science.gov (United States)

    Li, Menghui; Guan, Shuguang; Wu, Chensheng; Gong, Xiaofeng; Li, Kun; Wu, Jinshan; di, Zengru; Lai, Choy-Heng

    2014-05-01

    Inspired by the analysis of several empirical online social networks, we propose a simple reaction-diffusion-like coevolving model, in which individuals are activated to create links based on their states, influenced by local dynamics and their own intention. It is shown that the model can reproduce the remarkable properties observed in empirical online social networks; in particular, the assortative coefficients are neutral or negative, and the power law exponents γ are smaller than 2. Moreover, we demonstrate that, under appropriate conditions, the model network naturally makes transition(s) from assortative to disassortative, and from sparse to dense in their characteristics. The model is useful in understanding the formation and evolution of online social networks.

  14. New Assortment of Sizing Adhesive%浆纱粘着剂新品种

    Institute of Scientific and Technical Information of China (English)

    刘海文; 何新勇; 张秀敏; 贾立霞; 王联军

    2001-01-01

    The general property , special property and major t echnical index of new assortment of sizing adhesive such as modified starch, mod ified polyvinyl alcohol, acrylic,polyester etc.the four assortments 21 kind products which are in initial use in practice at home and abroad have been intr oduced.%介绍了国内外生产实践中初见使用的一些浆纱粘着剂新品种,例变性淀粉类、变性 聚乙烯醇类、丙烯酸类、聚酯类等4大类21种产品的共性、特性和主要技术指标。

  15. Interactive computer program for learning genetic principles of segregation and independent assortment through meiosis.

    Science.gov (United States)

    Yang, Xiaoli; Ge, Rong; Yang, Yufei; Shen, Hao; Li, Yingjie; Tseng, Charles C

    2009-01-01

    Teaching fundamental principles of genetics such as segregation and independent assortment of genes could be challenging for high school and college biology instructors. Students without thorough knowledge in meiosis often end up of frustration and failure in genetics courses. Although all textbooks and laboratory manuals have excellent graphic demonstrations and photographs of meiotic process, students may not always master the concept due to the lack of hands-on exercise. In response to the need for an effective lab exercise to understand the segregation of allelic genes and the independent assortment of the unlinked genes, we developed an interactive program for students to manually manipulate chromosome models and visualize each major step of meiosis so that these two genetic principles can be thoroughly understood.

  16. Cytological evidence for assortment mitosis leading to loss of heterozygosity in rice.

    Science.gov (United States)

    Wang, Richard R-C; Li, Xiaomei; Chatterton, N Jerry

    2006-05-01

    In the root meristem cells of the rice line AMR, which causes loss of heterozygosity in its hybrids, both normal and assortment mitoses were observed. During normal mitosis, chromosomes did not form homologous pairs at metaphase; all chromosomes lined up at the equatorial plate and 2 chromatids of each chromosome disjoined at the centromere and moved toward opposite poles. During assortment mitosis, varying numbers of paired homologues were observed at mitotic metaphase. Two groups of 12 chromosomes separated and moved towards the opposite poles of daughter cells with few chromosomes having their chromatids separated at anaphase. These observations support the proposed mechanism that is responsible for early genotype fixation in rice hybrids involving AMR.

  17. Relative importance of social synergy, assortation and networks in the evolution of social cooperation

    CERN Document Server

    Montoreano, Claudia

    2013-01-01

    We compare the likelihood of different socially relevant features to allow the evolutionary emergence and maintenance of cooperation in a generalized variant of the iterated Prisoners Dilemma game. Results show that the average costs/benefit balance of cooperation is the primary constraint for its establishment and maintenance. Behavior increasing inclusive fitness such as assortation, homophily, kin-selection and tagging of individuals, is second in importance. Networks characteristics were the least important in favoring the establishment and maintenance of cooperation, despite being the most popular in recent research on the subject. Results suggest that inclusive fitness theory with its expansions to include assortative and economic considerations is more general, powerful and relevant in analyzing social phenomena than kin selection theory with its emphasis on genetic relatedness. Merging economics with evolutionary theory will be necessary to reveal more about the nature of social dynamics.

  18. Growth and yield models, assortment type and analysis of deadwood in chestnut coppice

    Directory of Open Access Journals (Sweden)

    Marziliano PA

    2013-02-01

    Full Text Available Chestnut (Castanea sativa MILL. is one of the most important forest tree species in Europe, and it is considered a symbol of the natural vegetation in southern Europe. In Calabria (southern Italy chestnut forest covers an area of approximately 87000 hectares, most of which (about 80% managed as coppice. In this study a growth and yield table has been elaborated. Thurthermore, assortment type and quantity of deadwood have been evaluated according to age of coppice and forest fire prevention, respectively. The study site is located in the “Presila of Catanzaro” and the research was carried out in 15 plots; the age of the examined stands ranged from 2 to 50 years old. More than 30000 shoots per hectare were recorded in the first two years after coppicing. As opposed, about 2300 and 1000 shoots per hectare were observed 15 and 50 years after coppicing, respectively. The culmination of the mean annual increment of the forest standing volume (16 m3 ha-1 year-1 was highlighted 25 years after coppicing, while the current annual increment culmination (21 m3 ha-1 year-1 was observed at 15 years. Fifteen years after coppicing, most of the wood production was constituted by small dimension assortments. Twenty five years after coppicing small and large poles were the prevailing assortments while telegraph poles and timber beams increased after 50 years. The amount of deadwood in forest ranged between 11.9 and 68.7 m3 ha-1. The largest component was represented by standing dead shoots. The results show that coppice management can be adopted even if the main purpose of the chestnut stand is the production of large size assortments. In chestnut coppice, highly vulnerable to fire, the reduction of stand density with silvicultural practices (thinning and displacement is the main way to promote the efficiency of forest and a higher strength and resiliency against forest fire.

  19. Quantifying the risk of pandemic influenza virus evolution by mutation and re-assortment.

    Science.gov (United States)

    Reperant, Leslie A; Grenfell, Bryan T; Osterhaus, Albert D M E

    2015-12-01

    Large outbreaks of zoonotic influenza A virus (IAV) infections may presage an influenza pandemic. However, the likelihood that an airborne-transmissible variant evolves upon zoonotic infection or co-infection with zoonotic and seasonal IAVs remains poorly understood, as does the relative importance of accumulating mutations versus re-assortment in this process. Using discrete-time probabilistic models, we determined quantitative probability ranges that transmissible variants with 1-5 mutations and transmissible re-assortants evolve after a given number of zoonotic IAV infections. The systematic exploration of a large population of model parameter values was designed to account for uncertainty and variability in influenza virus infection, epidemiological and evolutionary processes. The models suggested that immunocompromised individuals are at high risk of generating IAV variants with pandemic potential by accumulation of mutations. Yet, both immunocompetent and immunocompromised individuals could generate high viral loads of single and double mutants, which may facilitate their onward transmission and the subsequent accumulation of additional 1-2 mutations in newly-infected individuals. This may result in the evolution of a full transmissible genotype along short chains of contact transmission. Although co-infection with zoonotic and seasonal IAVs was shown to be a rare event, it consistently resulted in high viral loads of re-assortants, which may facilitate their onward transmission among humans. The prevention or limitation of zoonotic IAV infection in immunocompromised and contact individuals, including health care workers, as well as vaccination against seasonal IAVs-limiting the risk of co-infection-should be considered fundamental tools to thwart the evolution of a novel pandemic IAV by accumulation of mutations and re-assortment.

  20. Recombination and Assortment in the Macronucleus of TETRAHYMENA THERMOPHILA: A Theoretical Study by Computer Simulation

    OpenAIRE

    Doerder, F. P.; Diblasi, S. L.

    1984-01-01

    The compound nature of the macronucleus of Tetrahymena thermophila presents multiple opportunities for recombination between genes on the same macronuclear chromosome. Such recombinants should be detectable through their assortment at subsequent amitotic macronuclear divisions. Thus, a macronucleus that is initially AB/ab should produce recombinant assortees of the genotypes Ab/aB. Computer simulation shows that, when the recombination frequency is two or fewer times per cell cycle, recombin...

  1. Review: Game theory of public goods in one-shot social dilemmas without assortment.

    Science.gov (United States)

    Archetti, Marco; Scheuring, István

    2012-04-21

    We review the theory of public goods in biology. In the N-person prisoner's dilemma, where the public good is a linear function of the individual contributions, cooperation requires some form of assortment, for example due to kin discrimination, population viscosity or repeated interactions. In most social species ranging from bacteria to humans, however, public goods are usually a non-linear function of the contributions, which makes cooperation possible without assortment. More specifically, a polymorphic state can be stable in which cooperators and non-cooperators coexist. The existence of mixed equilibria in public goods games is a fundamental result in the study of cooperation that has been overlooked so far, because of the disproportionate attention given to the two- and N-person prisoner's dilemma. Methods and results from games with pairwise interactions or linear benefits cannot, in general, be extended to the analysis of public goods. Game theory helps explain the production of public goods in one-shot, N-person interactions without assortment, it leads to predictions that can be easily tested and allows a prescriptive approach to cooperation.

  2. Assessment of the effect of quality factors on the assortment structure in poplar plantations

    Directory of Open Access Journals (Sweden)

    Danilović Milorad

    2008-01-01

    Full Text Available Quality factors affecting the assortment quality structure in poplar plantations were researched on nine temporary sample plots in the period 1997-2004, from the aspect of the implementation of roundwood standards. Sample plots were selected depending on the factors, the effect of which was studied. The following factors were researched: clonal species, planting pattern, flood risk, pruning of branches, plantation position and age. The study was performed by the original methodology. Based on the study results, it is concluded that knots have the highest effect on the assortment quality structure in poplar plantations, regardless of the site and stand conditions. Their effect rises significantly with the increase of tree diameter. Also, the analyses show that the number of large and rotten knots on the tree trunk increases considerably with the older age. In the flooded area, the sweep of the lower part of the stem is more intensive and multiple curvatures are frequent on the trees growing immediately along the river, whereas curvature decreases with the distance from the river bank. Based on the study results, it is concluded that the percentage of best quality assortments is considerably reduced by the above wood defects.

  3. The strength of assortative mating for flowering date and its basis in individual variation in flowering schedule.

    Science.gov (United States)

    Weis, A E; Nardone, E; Fox, G A

    2014-10-01

    Although it has been widely asserted that plants mate assortatively by flowering time, there is virtually no published information on the strength or causes of phenological assortment in natural populations. When strong, assortative mating can accelerate the evolution of plant reproductive phenology through its inflationary effect on genetic variance. We estimated potential assortative mating for flowering date in 31 old-field species in Ontario, Canada. For each species, we constructed a matrix of pairwise mating probabilities from the individual flowering schedules, that is the number of flower deployed on successive dates. The matrix was used to estimate the phenotypic correlation between mates, ρ, for flowering date. We also developed a measure of flowering synchrony within species, S, based upon the eigenstructure of the mating matrix. The mean correlation between pollen recipients and potential donors for flowering date was ρ=0.31 (range: 0.05-0.63). A strong potential for assortative mating was found among species with high variance in flowering date, flowering schedules of short duration and skew towards early flower deployment. Flowering synchrony, S, was negatively correlated with potential assortment (r= -0.49), but we go on to show that although low synchrony is a necessary condition for phenological assortative mating, it may not be sufficient to induce assortment for a given phenological trait. The potential correlation between mates showed no seasonal trend; thus, as climate change imposes selection on phenology through longer growing seasons, spring-flowering species are no more likely to experience an accelerated evolutionary response than summer species.

  4. Active phenotypic assortment in mate selection: self-descriptions and sought-for attributes of mates in dating advertisements.

    Science.gov (United States)

    Sakai, D K; Johnson, R C

    1997-01-01

    Assortative mating results both from social homogamy (coming for similar environments) and active phenotypic assortment (seeking a mate with desired attributes). Dating advertisements provide a means of assessing the role of active phenotypic assortment in the absence of social homogamy. The relative frequency of mention of different attributes (given limited advertising space) is informative regarding the salience of these attributes in active phenotypic assortment. Sex differences in self descriptions and in attributes desired in others in dating advertisements provide a means of evaluating sociobiological issues. Data were analyzed from 191 ads placed by females and 253 ads placed by males seeking to meet members of the opposite sex. The most frequently mentioned attributes are age, race, occupation, moral characteristics, and physical attractiveness. While close to 80 per cent of the advertisers provided information concerning their own race/ethnicity, only a minority of those providing such information limited their quest for a partner to members of their own race/ethnicity. There is substantial assortative mating for religion, family background, status, and educational attainment, yet these attributes are rarely (religion and education) or never (family background) mentioned in advertisements, suggesting that assortative mating on these dimensions may be solely a consequence of social homogamy.

  5. Assortative mating and differential male mating success in an ash hybrid zone population

    Directory of Open Access Journals (Sweden)

    Frascaria-Lacoste Nathalie

    2006-11-01

    Full Text Available Abstract Background The structure and evolution of hybrid zones depend mainly on the relative importance of dispersal and local adaptation, and on the strength of assortative mating. Here, we study the influence of dispersal, temporal isolation, variability in phenotypic traits and parasite attacks on the male mating success of two parental species and hybrids by real-time pollen flow analysis. We focus on a hybrid zone population between the two closely related ash species Fraxinus excelsior L. (common ash and F. angustifolia Vahl (narrow-leaved ash, which is composed of individuals of the two species and several hybrid types. This population is structured by flowering time: the F. excelsior individuals flower later than the F. angustifolia individuals, and the hybrid types flower in-between. Hybrids are scattered throughout the population, suggesting favorable conditions for their local adaptation. We estimate jointly the best-fitting dispersal kernel, the differences in male fecundity due to variation in phenotypic traits and level of parasite attack, and the strength of assortative mating due to differences in flowering phenology. In addition, we assess the effect of accounting for genotyping error on these estimations. Results We detected a very high pollen immigration rate and a fat-tailed dispersal kernel, counter-balanced by slight phenological assortative mating and short-distance pollen dispersal. Early intermediate flowering hybrids, which had the highest male mating success, showed optimal sex allocation and increased selfing rates. We detected asymmetry of gene flow, with early flowering trees participating more as pollen donors than late flowering trees. Conclusion This study provides striking evidence that long-distance gene flow alone is not sufficient to counter-act the effects of assortative mating and selfing. Phenological assortative mating and short-distance dispersal can create temporal and spatial structuring that appears

  6. At first glance, transparency enhances assimilation.

    Science.gov (United States)

    Koning, Arno; de Weert, Charles M M; van Lier, Rob

    2008-01-01

    We investigated the role of transparency, perceptual grouping, and presentation time on perceived lightness. Both transparency and perceptual grouping have been found to result in assimilation effects, but only for ambiguous stimulus displays and with specific attentional instructions. By varying the presentation times of displays with two partly overlapping transparent E-shaped objects, we measured assimilation in unambiguous stimulus displays and without specific attentional instructions. The task was to judge which of two simultaneously presented E-shaped objects was darker. With unrestrained presentation times, if a transparency interpretation was possible, assimilation was not found. Inhibiting a transparency interpretation by occluding the local junctions between the two E-shaped objects, did lead to assimilation. With short presentation times, if a transparency interpretation was possible, assimilation was now also found. Thus, we conclude that, although transparency appears to enhance assimilation, with unambiguous stimulus displays and without specific attentional instructions, perceptual grouping is more important for assimilation to occur.

  7. The gendered embodiment of shame: Intersections of acquaintance rape, trauma and self-blame in Pompidou posse by Sarah Lotz

    Directory of Open Access Journals (Sweden)

    Jessica Murray

    2014-08-01

    Full Text Available This article offers a feminist literary analysis of the gendered embodiment of shame in Pompidou posse by Sarah Lotz. In this novel, Lotz depicts female characters who are sexually assaulted by acquaintances and the resultant shame and trauma reside in their bodies. I will demonstrate that the embodied shame of these characters is distinctly gendered and that this shapes their attempts to cope with the aftermath of the sexual assaults. A close reading of the text reveals that the characters are exposed to overwhelming social messages of female culpability in a larger context that is rife with misogyny. As a result, they anticipate blame to such an extent that they blame themselves and internalise this blame as shame. By focusing on the bodies of the survivors, Lotz demonstrates the embodiment of shame, but she also suggests a corporeal challenge to silencing. The bodies of these characters speak loudly, albeit sometimes in the halting language of trauma, and they function to alert them to danger, to help them excavate memories that are made inaccessible and to testify to traumatic sexual assault.

  8. Association between suicidal ideation and exposure to suicide in social relationships among family, friend, and acquaintance survivors in South Korea.

    Science.gov (United States)

    Song, In Han; Kwon, Se Won; Kim, Ji Eun

    2015-06-01

    Exposure to suicide in social relationships may be associated with suicidal ideation among survivors. In South Korea, which is known for having the highest suicide rate among OECD countries, exposure to suicide in social relationships can have serious consequences as social relationships are greatly emphasized in the society. The purpose of this study was to examine the association between survivors' suicidal ideation and their exposure to suicide in close relationships. Data collected through a telephone survey of a total of 1,000 men and women selected from across the nation using a stratified sampling method were analyzed. The results show that individuals who lost a family member, friend, or acquaintance in their lifetime are 4.5 times, 3.7 times, 2.2 times, respectively, more likely to have suicidal ideation in the past year compared to those without such experience. These findings suggest that special intervention for suicide survivors should be considered for those who experience suicide in close relationships.

  9. Assimilation of nitrate by yeasts.

    Science.gov (United States)

    Siverio, José M

    2002-08-01

    Nitrate assimilation has received much attention in filamentous fungi and plants but not so much in yeasts. Recently the availability of classical genetic and molecular biology tools for the yeast Hansenula polymorpha has allowed the advance of the study of this metabolic pathway in yeasts. The genes YNT1, YNR1 and YNI1, encoding respectively nitrate transport, nitrate reductase and nitrite reductase, have been cloned, as well as two other genes encoding transcriptional regulatory factors. All these genes lie closely together in a cluster. Transcriptional regulation is the main regulatory mechanism that controls the levels of the enzymes involved in nitrate metabolism although other mechanisms may also be operative. The process involved in the sensing and signalling of the presence of nitrate in the medium is not well understood. In this article the current state of the studies of nitrate assimilation in yeasts as well as possible venues for future research are reviewed.

  10. Data Assimilation in Marine Models

    DEFF Research Database (Denmark)

    Frydendall, Jan

    a computational point of view, e.g. low storage cost, no linearizations of the numerical models, etc. However, this also gives rise to many unforeseen difficulties, e.g. the curse of dimensionality, huge computational costs, etc. The challenge faced in this thesis was finding filters that could handle...... assimilation concept into an atmospheric chemical transport model. This paper deals with the results and conclusions obtained through some of the first experiments with the Optimal Interpolation filter in a geophysical model. The second paper F, deals with the construction of a finite element solver......This thesis consists of six research papers published or submitted for publication in the period 2006-2009 together with a summary report. The main topics of this thesis are nonlinear data assimilation techniques and estimation in dynamical models. The focus has been on the nonlinear filtering...

  11. Variational data assimilation with superparameterization

    Directory of Open Access Journals (Sweden)

    I. Grooms

    2015-03-01

    Full Text Available Superparameterization (SP is a multiscale computational approach wherein a large scale atmosphere or ocean model is coupled to an array of simulations of small scale dynamics on periodic domains embedded into the computational grid of the large scale model. SP has been successfully developed in global atmosphere and climate models, and is a promising approach for new applications. The authors develop a 3D-Var variational data assimilation framework for use with SP; the relatively low cost and simplicity of 3D-Var in comparison with ensemble approaches makes it a natural fit for relatively expensive multiscale SP models. To demonstrate the assimilation framework in a simple model, the authors develop a new system of ordinary differential equations similar to the two-scale Lorenz-'96 model. The system has one set of variables denoted {Yi}, with large and small scale parts, and the SP approximation to the system is straightforward. With the new assimilation framework the SP model approximates the large scale dynamics of the true system accurately.

  12. Brief report: the association between non-suicidal self-injury, self-concept and acquaintance with self-injurious peers in a sample of adolescents.

    Science.gov (United States)

    Claes, Laurence; Houben, Adinda; Vandereycken, Walter; Bijttebier, Patricia; Muehlenkamp, Jennifer

    2010-10-01

    The current study investigated the association between non-suicidal self-injury (NSSI), self-concept and acquaintance with NSSI peers in a sample of 150 high school students (60% female) with a mean age of 15.56 (SD=2.00) years. Analyses showed that students with NSSI rated themselves lower on academic intelligence, physical attractiveness, social skills and emotional stability than their non-NSSI peers. The self-injurers also had more friends who engaged in NSSI, and having more NSSI acquaintances was negatively related to self-esteem. It could be that adolescents with lower self-esteem are more attracted to self-injuring peers, or that adolescents with low self-esteem are more vulnerable to copy NSSI to deal with their problems or to gain a certain identity in their peer group. Future studies must test these possible NSSI pathways.

  13. Marketing Strategy Development Directions of Web Assortment in the Republic of Serbia

    Directory of Open Access Journals (Sweden)

    Jelena Končar

    2010-06-01

    Full Text Available Electronic commerce is a contemporary way of doing trade activities based on the use of information and communication technologies. In contemporary business conditions, trade faces numerous changes, which are mostly, before all, the result of market globalization, as well as information technology development. The Web assortment in electronic commerce is the key marketing instrument in a trade organization. The basic task of Serbian companies understands the need of tracking all the changes in the business environment on the global market with a view of meeting consumers requirements and needs. Business success of an e-commerce trader, besides other factors, greatly depends on the adequate choice of sales programs.

  14. [The influence of Fasciola hepatica invasion on the assorted milk quality parameters in cows].

    Science.gov (United States)

    Michalski, Mirosław

    2002-01-01

    The investigations of the influence of Fasciola hepatica invasion on the assorted parameters of milk quality were performed in cows. Mean protein content in the milk from infected animals ammounted 3.60% and was higher than in the milk from uninfected cows (3.30%). Similar tendency was observed in the case of the fat (5.08% and 3.91%) and lactose (4.36% and 4.34%). The count of somatic cells in milk from infected cows was lower than in milk from uninfected animals (356.07 and 1776.92). It can indicate immunosupressive activity of Fasciola hepatica on the host.

  15. Assortment of Deep Mantle Fluids and Their Products in Kimberlites from China

    Institute of Scientific and Technical Information of China (English)

    ZHAO Lei; HAO Jinhua; DING Yifei; LIU Yulong

    2004-01-01

    Based on studies of petrography, mineralogy and mineral chemistry, deep mantle fluids and their products in kimberlites and diamonds can be assorted into the ultradeep fluid-transmitted minerals with an oxygen-free feature, the deep fluid metasomatized-minerals characterized by enrichment in TiO2, K2O, BaO, REE and Fe3+, and the deep fluidreformed minerals. The three types show a successive descent in fluid origin depth and metasomatism strength, and they have brought forth a series of corresponding metasomatic products.

  16. [The marketing analysis of assortment of market of pharmaceuticals applied in treatment of psoriasis in Ukraine].

    Science.gov (United States)

    Kotvitskaya, A A; Karlo, V V

    2013-01-01

    The analysis of assortment of pharmaceuticals for treatment of psoriasis recommended by Minzdrav of Ukraine and present at the national pharmaceutical market is made. The characteristics of distribution of national and foreign producers of antihistamine and anti-psoriatic pharmaceuticals are established The availability of particular medicinal forms of various producers is analyzed too. The characteristics and tendencies in consumption of these groups of pharmaceuticals in natural and monetary units are analyzed including dynamics of changes of mean wholesale prices during the analyzed period.

  17. The Impact of Product Assortment Size and Attribute Quantity on Information Searches

    DEFF Research Database (Denmark)

    Dörnyei, Krisztina Rita; Chrysochou, Polymeros; Krystallis, Athanasios

    2017-01-01

    Purpose: This paper investigates the impact of assortment size and attribute quantity on the depth and content of consumer information searches. Design/methodology/approach: For a computer-aided experiment using an information display board, participants (n=393) were placed in a simulated shopping......, this sacrifice comes at the expense of secondary product attributes (e.g., nutrition information, country of origin), whereas primary product attributes (e.g., brand name, price) remain constant. Attribute quantity does not have a significant effect on information search. Practical implications: Provided...

  18. Positive network assortativity of influenza vaccination at a high school: implications for outbreak risk and herd immunity.

    Science.gov (United States)

    Barclay, Victoria C; Smieszek, Timo; He, Jianping; Cao, Guohong; Rainey, Jeanette J; Gao, Hongjiang; Uzicanin, Amra; Salathé, Marcel

    2014-01-01

    Schools are known to play a significant role in the spread of influenza. High vaccination coverage can reduce infectious disease spread within schools and the wider community through vaccine-induced immunity in vaccinated individuals and through the indirect effects afforded by herd immunity. In general, herd immunity is greatest when vaccination coverage is highest, but clusters of unvaccinated individuals can reduce herd immunity. Here, we empirically assess the extent of such clustering by measuring whether vaccinated individuals are randomly distributed or demonstrate positive assortativity across a United States high school contact network. Using computational models based on these empirical measurements, we further assess the impact of assortativity on influenza disease dynamics. We found that the contact network was positively assortative with respect to influenza vaccination: unvaccinated individuals tended to be in contact more often with other unvaccinated individuals than with vaccinated individuals, and these effects were most pronounced when we analyzed contact data collected over multiple days. Of note, unvaccinated males contributed substantially more than unvaccinated females towards the measured positive vaccination assortativity. Influenza simulation models using a positively assortative network resulted in larger average outbreak size, and outbreaks were more likely, compared to an otherwise identical network where vaccinated individuals were not clustered. These findings highlight the importance of understanding and addressing heterogeneities in seasonal influenza vaccine uptake for prevention of large, protracted school-based outbreaks of influenza, in addition to continued efforts to increase overall vaccine coverage.

  19. Positive network assortativity of influenza vaccination at a high school: implications for outbreak risk and herd immunity.

    Directory of Open Access Journals (Sweden)

    Victoria C Barclay

    Full Text Available Schools are known to play a significant role in the spread of influenza. High vaccination coverage can reduce infectious disease spread within schools and the wider community through vaccine-induced immunity in vaccinated individuals and through the indirect effects afforded by herd immunity. In general, herd immunity is greatest when vaccination coverage is highest, but clusters of unvaccinated individuals can reduce herd immunity. Here, we empirically assess the extent of such clustering by measuring whether vaccinated individuals are randomly distributed or demonstrate positive assortativity across a United States high school contact network. Using computational models based on these empirical measurements, we further assess the impact of assortativity on influenza disease dynamics. We found that the contact network was positively assortative with respect to influenza vaccination: unvaccinated individuals tended to be in contact more often with other unvaccinated individuals than with vaccinated individuals, and these effects were most pronounced when we analyzed contact data collected over multiple days. Of note, unvaccinated males contributed substantially more than unvaccinated females towards the measured positive vaccination assortativity. Influenza simulation models using a positively assortative network resulted in larger average outbreak size, and outbreaks were more likely, compared to an otherwise identical network where vaccinated individuals were not clustered. These findings highlight the importance of understanding and addressing heterogeneities in seasonal influenza vaccine uptake for prevention of large, protracted school-based outbreaks of influenza, in addition to continued efforts to increase overall vaccine coverage.

  20. Choosing mates based on the diet of your ancestors: replication of non-genetic assortative mating in Drosophila melanogaster

    Directory of Open Access Journals (Sweden)

    Michael A. Najarro

    2015-08-01

    Full Text Available Assortative mating has been a focus of considerable research because of its potential to influence biodiversity at many scales. Sharon et al. (2010 discovered that an inbred strain of Drosophila melanogaster mated assortatively based on the diet of previous generations, leading to initial reproductive isolation without genetic evolution. This behavior was reproduced by manipulating the microbiome independently of the diet, pointing to extracellular bacterial symbionts as the assortative mating cue. To further investigate the biological significance of this result, we attempted to reproduce this phenomenon in an independent laboratory using different genotypes and additional mating assays. Supporting the previous result, we found that a different inbred strain also mated assortatively based on the diets of previous generations. However, we were unable to generate assortative mating in an outbred strain from North Carolina. Our results support the potential for non-genetic mechanisms to influence reproductive isolation, but additional work is needed to investigate the importance of this mechanism in natural populations of Drosophila.

  1. Conditions for successful data assimilation

    Science.gov (United States)

    Morzfeld, M.; Chorin, A. J.

    2013-12-01

    Many applications in science and engineering require that the predictions of uncertain models be updated by information from a stream of noisy data. The model and the data jointly define a conditional probability density function (pdf), which contains all the information one has about the process of interest and various numerical methods can be used to study and approximate this pdf, e.g. the Kalman filter, variational methods or particle filters. Given a model and data, each of these algorithms will produce a result. We are interested in the conditions under which this result is reasonable, i.e. consistent with the real-life situation one is modeling. In particular, we show, using idealized models, that numerical data assimilation is feasible in principle only if a suitably defined effective dimension of the problem is not excessive. This effective dimension depends on the noise in the model and the data, and in physically reasonable problems it can be moderate even when the number of variables is huge. In particular, we find that the effective dimension being moderate induces a balance condition between the noises in the model and the data; this balance condition is often satisfied in realistic applications or else the noise levels are excessive and drown the underlying signal. We also study the effects of the effective dimension on particle filters in two instances, one in which the importance function is based on the model alone, and one in which it is based on both the model and the data. We have three main conclusions: (1) the stability (i.e., non-collapse of weights) in particle filtering depends on the effective dimension of the problem. Particle filters can work well if the effective dimension is moderate even if the true dimension is large (which we expect to happen often in practice). (2) A suitable choice of importance function is essential, or else particle filtering fails even when data assimilation is feasible in principle with a sequential algorithm

  2. Compensation for Complete Assimilation in Speech Perception: The Case of Korean Labial-to-Velar Assimilation

    Science.gov (United States)

    Mitterer, Holger; Kim, Sahyang; Cho, Taehong

    2013-01-01

    In connected speech, phonological assimilation to neighboring words can lead to pronunciation variants (e.g., "garden bench" [arrow right] "garde'm' bench"). A large body of literature suggests that listeners use the phonetic context to reconstruct the intended word for assimilation types that often lead to incomplete assimilations (e.g., a…

  3. Assortative mating and the maintenance of population structure in a natural hybrid zone.

    Science.gov (United States)

    Culumber, Zachary W; Ochoa, Olivia M; Rosenthal, Gil G

    2014-08-01

    Understanding the factors that give rise to natural hybrid zones and govern their dynamics and structure is important to predicting the evolutionary consequences of hybridization. Here we use a combination of multigenerational population genetic data, mating patterns from a natural population, behavioral assays, and mark-recapture data within clinal hybrid zones of the genus Xiphophorus to test the role of assortative mating in maintaining population structure and the potential for ongoing genetic exchange between heterospecifics. Our data demonstrate that population structure is temporally robust and driven largely by assortative mating stemming from precopulatory isolation between pure species. Furthermore, mark-recapture data revealed that rates of migration within the same stream reach are far below the level needed to support population structure. In contrast to many empirical studies of natural hybrid zones, there appeared to be no hybrid male dysfunction or discrimination against hybrid males by pure parental females, and hybrid females mated and associated with pure species and hybrid males at random. Despite strong isolation between pure parentals, hybrids therefore can act as a conduit for genetic exchange between heterospecifics, which has been shown to increase the tempo of evolutionary change. Additionally, our findings highlight the complexity of natural hybrid zone dynamics, demonstrating that sexual and ecological selection together can give rise to patterns that do not fit classical models of hybrid zone evolution.

  4. Variation in human mate choice: simultaneously investigating heritability, parental influence, sexual imprinting, and assortative mating.

    Science.gov (United States)

    Zietsch, Brendan P; Verweij, Karin J H; Heath, Andrew C; Martin, Nicholas G

    2011-05-01

    Human mate choice is central to individuals' lives and to the evolution of the species, but the basis of variation in mate choice is not well understood. Here we looked at a large community-based sample of twins and their partners and parents ([Formula: see text] individuals) to test for genetic and family environmental influences on mate choice, while controlling for and not controlling for the effects of assortative mating. Key traits were analyzed, including height, body mass index, age, education, income, personality, social attitudes, and religiosity. This revealed near-zero genetic influences on male and female mate choice over all traits and no significant genetic influences on mate choice for any specific trait. A significant family environmental influence was found for the age and income of females' mate choices, possibly reflecting parental influence over mating decisions. We also tested for evidence of sexual imprinting, where individuals acquire mate-choice criteria during development by using their opposite-sex parent as the template of a desirable mate; there was no such effect for any trait. The main discernible pattern of mate choice was assortative mating; we found that partner similarity was due to initial choice rather than convergence and also at least in part to phenotypic matching.

  5. Evidence that avian reovirus σNS is an RNA chaperone: implications for genome segment assortment.

    Science.gov (United States)

    Borodavka, Alexander; Ault, James; Stockley, Peter G; Tuma, Roman

    2015-08-18

    Reoviruses are important human, animal and plant pathogens having 10-12 segments of double-stranded genomic RNA. The mechanisms controlling the assortment and packaging of genomic segments in these viruses, remain poorly understood. RNA-protein and RNA-RNA interactions between viral genomic segment precursors have been implicated in the process. While non-structural viral RNA-binding proteins, such as avian reovirus σNS, are essential for virus replication, the mechanism by which they assist packaging is unclear. Here we demonstrate that σNS assembles into stable elongated hexamers in vitro, which bind single-stranded nucleic acids with high affinity, but little sequence specificity. Using ensemble and single molecule fluorescence spectroscopy, we show that σNS also binds to a partially double-stranded RNA, resulting in gradual helix unwinding. The hexamer can bind multiple RNA molecules and exhibits strand-annealing activity, thus mediating conversion of metastable, intramolecular stem-loops into more stable heteroduplexes. We demonstrate that the ARV σNS acts as an RNA chaperone facilitating specific RNA-RNA interactions between genomic precursors during segment assortment and packaging.

  6. Extended inclusive fitness theory: synergy and assortment drives the evolutionary dynamics in biology and economics.

    Science.gov (United States)

    Jaffe, Klaus

    2016-01-01

    W.D. Hamilton's Inclusive Fitness Theory explains the conditions that favor the emergence and maintenance of social cooperation. Today we know that these include direct and indirect benefits an agent obtains by its actions, and through interactions with kin and with genetically unrelated individuals. That is, in addition to kin-selection, assortation or homophily, and social synergies drive the evolution of cooperation. An Extended Inclusive Fitness Theory (EIFT) synthesizes the natural selection forces acting on biological evolution and on human economic interactions by assuming that natural selection driven by inclusive fitness produces agents with utility functions that exploit assortation and synergistic opportunities. This formulation allows to estimate sustainable cost/benefit threshold ratios of cooperation among organisms and/or economic agents, using existent analytical tools, illuminating our understanding of the dynamic nature of society, the evolution of cooperation among kin and non-kin, inter-specific cooperation, co-evolution, symbioses, division of labor and social synergies. EIFT helps to promote an interdisciplinary cross fertilization of the understanding of synergy by, for example, allowing to describe the role for division of labor in the emergence of social synergies, providing an integrated framework for the study of both, biological evolution of social behavior and economic market dynamics. Another example is a bio-economic understanding of the motivations of terrorists, which identifies different forms of terrorism.

  7. An adaptive assortment management in the balanced scorecard of the pharmaceutical organization

    Directory of Open Access Journals (Sweden)

    I. F. Samoshchenkova

    2015-12-01

    Full Text Available Currently, in order to achieve success in business, companies need to be able to adapt quickly to the changing market conditions, and surpass their competitors in quality, speed of service, breadth of product range and price of products. Aim. To analyze the usefulness of an adaptive assortment management in the balanced scorecard of the pharmaceutical organization Methods and results. The objects of the research are features of the methodology of modern marketing in the field of management of goods and assortment in application of the pharmaceutical companies’ activities. One of the important elements of pharmaceutical management is the management of goods variety, which acts as a set of institutional arrangements, procedures and actions, applied management and employees of the economic entity for the successful and efficient business activities. The Balanced Scorecard (BSC is an integral part of management performance. It allows to operate units and employees in accordance with the strategic goals of the organization, as well it lets to evaluate the results of these activities through a set of performance indicators. Conclusions. The adaptive range control in pharmaceutical organizations on the basis of a balanced scorecard allows you to control and account each operation performed by specialist and thus improves key indicators of pharmacy business.

  8. Assimilation of MLS and OMI Ozone Data

    Science.gov (United States)

    Stajner, I.; Wargan, K.; Chang, L.-P.; Hayashi, H.; Pawson, S.; Froidevaux, L.; Livesey, N.

    2005-01-01

    Ozone data from Aura Microwave Limb Sounder (MLS) and Ozone Monitoring Instrument (OMI) were assimilated into the ozone model at NASA's Global Modeling and Assimilation Office (GMAO). This assimilation produces ozone fields that are superior to those from the operational GMAO assimilation of Solar Backscatter Ultraviolet (SBUV/2) instrument data. Assimilation of Aura data improves the representation of the "ozone hole" and the agreement with independent Stratospheric Aerosol and Gas Experiment (SAGE) III and ozone sonde data. Ozone in the lower stratosphere is captured better: mean state, vertical gradients, spatial and temporal variability are all improved. Inclusion of OMI and MLS data together, or separately, in the assimilation system provides a way of checking how consistent OMI and MLS data are with each other, and with the ozone model. We found that differences between OMI total ozone column data and model forecasts decrease after MLS data are assimilated. This indicates that MLS stratospheric ozone profiles are consistent with OMI total ozone columns. The evaluation of error characteristics of OMI and MLS ozone will continue as data from newer versions of retrievals becomes available. We report on the initial step in obtaining global assimilated ozone fields that combine measurements from different Aura instruments, the ozone model at the GMAO, and their respective error characteristics. We plan to use assimilated ozone fields in estimation of tropospheric ozone. We also plan to investigate impacts of assimilated ozone fields on numerical weather prediction through their use in radiative models and in the assimilation of infrared nadir radiance data from NASA's Advanced Infrared Sounder (AIRS).

  9. Data Assimilation - Advances and Applications

    Energy Technology Data Exchange (ETDEWEB)

    Williams, Brian J. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2014-07-30

    This presentation provides an overview of data assimilation (model calibration) for complex computer experiments. Calibration refers to the process of probabilistically constraining uncertain physics/engineering model inputs to be consistent with observed experimental data. An initial probability distribution for these parameters is updated using the experimental information. Utilization of surrogate models and empirical adjustment for model form error in code calibration form the basis for the statistical methodology considered. The role of probabilistic code calibration in supporting code validation is discussed. Incorporation of model form uncertainty in rigorous uncertainty quantification (UQ) analyses is also addressed. Design criteria used within a batch sequential design algorithm are introduced for efficiently achieving predictive maturity and improved code calibration. Predictive maturity refers to obtaining stable predictive inference with calibrated computer codes. These approaches allow for augmentation of initial experiment designs for collecting new physical data. A standard framework for data assimilation is presented and techniques for updating the posterior distribution of the state variables based on particle filtering and the ensemble Kalman filter are introduced.

  10. The Race Race: Assimilation in America

    Science.gov (United States)

    Balis, Andrea; Aman, Michael

    2013-01-01

    Can race and assimilation be taught? Interdisciplinary pedagogy provides a methodology, context, and use of nontraditional texts culled from American cultural history such as from, theater and historical texts. This approach and these texts prove useful for an examination of race and assimilation in America. The paper describes a course that while…

  11. Data assimilation a mathematical introduction

    CERN Document Server

    Law, Kody; Zygalakis, Konstantinos

    2015-01-01

    This book provides a systematic treatment of the mathematical underpinnings of work in data assimilation, covering both theoretical and computational approaches. Specifically the authors develop a unified mathematical framework in which a Bayesian formulation of the problem provides the bedrock for the derivation, development and analysis of algorithms; the many examples used in the text, together with the algorithms which are introduced and discussed, are all illustrated by the MATLAB software detailed in the book and made freely available online. The book is organized into nine chapters: the first contains a brief introduction to the mathematical tools around which the material is organized; the next four are concerned with discrete time dynamical systems and discrete time data; the last four are concerned with continuous time dynamical systems and continuous time data and are organized analogously to the corresponding discrete time chapters. This book is aimed at mathematical researchers interested in a sy...

  12. A New Approach to Data Assimilation

    Institute of Scientific and Technical Information of China (English)

    Wang Bin; ZHAO Ying

    2006-01-01

    A significant attempt to design a timesaving and efficient four-dimensional variational data assimilation dimensional variational data assimilation of mapped observation (3DVM)' is proposed, based on the new concept of mapped observation and the new idea of backward 4DVar. Like the available 4DVar, 3DVM produces an optimal initial condition (IC) that is consistent with the prediction model due to the inclusion of model constraints and best fits the observations in the assimilation window through the model solution trajectory. Different from the 4DVar, the IC derived from 3DVM is located at the end of the assimilation window rather than at the beginning conventionally. This change greatly reduces the computing cost for the new approach, which is almost the same as that of the three-dimensional variational data assimilation (3DVar). Especially, such a change is able to improve assimilation accuracy because it does not need the tangential linear and adjoint approximations to calculate the gradient of cost function. Therefore,in numerical test, the new approach produces better IC than 4DVar does for 72-h simulation of TY9914(Dan), by assimilating the three-dimensional fields of temperature and wind retrieved from the Advanced Microwave Sounding Unit-A (AMSU-A) observations. Meanwhile, it takes only 1/7 of the computing cost that the 4DVar requires for the same initialization with the same retrieved data.

  13. Manufacturer and retailer brands in food retail assortments: Notes from a shopping trip across Europe

    DEFF Research Database (Denmark)

    Esbjerg, Lars; Grunert, Klaus G.; Bech-Larsen, Tino

    architecture is based on the assumption that brands are not evaluated in isolation, but are placed in and evaluated within a broader context. This assumption is also important in a retail context. Consumers do not look at an isolated product or brand on the shelf. Their evaluation of the individual brand...... of brand architecture and apply it to food retailers, con-ceptualising the brand architectures of food retailers as the portfolio of brands (gene-ric, retailer and manufacturer brands), which are included in the assortment of a retail concept (ie, a retail chain). In addition to developing a concept....... This subsequent study investigated whether consumers notice differences between the brand architectures of food retailers and how these are evaluated....

  14. The Analysis Of The Correlations And Regressions Between Some Characters On A Wheat Isogenic Varities Assortment

    Science.gov (United States)

    Păniţă, Ovidiu

    2015-09-01

    In the years 2012-2014 on Banu-Maracine DRS there were tested an assortment of 25 isogenic lines of wheat (Triticum aestivum ssp.vulgare), the analyzed characters being the number of seeds/spike, seeds weight/spike (g), no. of spikes/m2, weight of a thousand seeds (WTS) (g) and no. of emerged plants/m2. Based on recorded data and statistical processing of those, they were identified a numbers of links between these characters. Also available regression models were identified between some of the studied characters. Based on component analysis, no. of seeds/spike and seeds weight/spike are components that influence in excess of 88% variance analysis, a total of seven genotypes with positive scores for both factors.

  15. Knocking out multigene redundancies via cycles of sexual assortment and fluorescence selection.

    Science.gov (United States)

    Suzuki, Yo; St Onge, Robert P; Mani, Ramamurthy; King, Oliver D; Heilbut, Adrian; Labunskyy, Vyacheslav M; Chen, Weidong; Pham, Linda; Zhang, Lan V; Tong, Amy H Y; Nislow, Corey; Giaever, Guri; Gladyshev, Vadim N; Vidal, Marc; Schow, Peter; Lehár, Joseph; Roth, Frederick P

    2011-02-01

    Phenotypes that might otherwise reveal a gene's function can be obscured by genes with overlapping function. This phenomenon is best known within gene families, in which an important shared function may only be revealed by mutating all family members. Here we describe the 'green monster' technology that enables precise deletion of many genes. In this method, a population of deletion strains with each deletion marked by an inducible green fluorescent protein reporter gene, is subjected to repeated rounds of mating, meiosis and flow-cytometric enrichment. This results in the aggregation of multiple deletion loci in single cells. The green monster strategy is potentially applicable to assembling other engineered alterations in any species with sex or alternative means of allelic assortment. To test the technology, we generated a single broadly drug-sensitive strain of Saccharomyces cerevisiae bearing precise deletions of all 16 ATP-binding cassette transporters within clades associated with multidrug resistance.

  16. Textual Research on Wu Jingzi' s Acquaintance with the Gentleman Yang Kai in Zhenzhou%吴敬梓交接真州缙绅杨凯略考

    Institute of Scientific and Technical Information of China (English)

    王伟康

    2011-01-01

    杰出小说家吴敬梓生前与真州朋友、原提督杨凯缔有交谊,堪为文士与官绅交往典型之一例。两人之间的交游,既使吴敬梓获得一定的精神慰藉和生活之需,也丰富了他的人生阅历,对其思想嬗变与诗歌创作都产生了微妙而积极的影响。其交游更为吴敬梓成功创作长篇讽刺小说《儒林外史》,潜心塑造汤奏(镇台)、汤奉(知县)等若干正反面典型人物形象,构拟诸多章回精采故事情节,积聚了丰富且珍贵的素材。%The acquaintance of outstanding novelist Wu Jingzi before his death with his friend Yang Kai, the former senior official, can be taken as a model among contacts between men of letters and gentries. The acquaintance be- tween them not only makes Wu Jingzi obtain certain mental comfort and life need, but also enriches the experience of his life, which performs a subtle and positive effect on his thoughts transmutation and poetry creation. Wu Jingzi' s acquaintance accumulates rich and precious materials for his successful creation of long ironic fiction The Scholars, shaping a number of images of positive and negative character such as Commanding officer Tang and Sheriff Tang with great concentration, and making up many wonderful plots of story with captions for each chapter.

  17. Imposing Nonlinear Constraints When Estimating Genetic and Cultural Transmission Under Assortative Mating: A Simulation Study Using Mx and BUGS

    NARCIS (Netherlands)

    Berg, van den Stephanie M.

    2009-01-01

    Modeling both genetic and cultural transmission in parent-offspring data in the presence of phenotypic assortment requires the imposition of nonlinear constraints. This article reports a simulation study that determined how well the structural equation modeling software package Mx and the Bayesian-o

  18. Contagion of Suicidal Symptoms as a Function of Assortative Relating and Shared Relationship Stress in College Roommates.

    Science.gov (United States)

    Joiner, Thomas E., Jr.

    2003-01-01

    Vulnerable people may become susceptible to the effects of shared life stress. To test this possibility, undergraduates and their roommates completed questionnaires on suicidality and stress. Consistent with an assortative relating process, roommates who chose to room together were more similar on a suicide index than were roommates who were…

  19. Organizing Products with Complements versus Substitutes: Effects on Store Preferences as a Function of Effort and Assortment Perceptions

    NARCIS (Netherlands)

    Diehl, K.; Herpen, van E.; Lamberton, C.

    2015-01-01

    Retailers often organize at least part of their assortment by displaying complementary products from different product categories together (e.g., a pair of pants with a shirt) rather than grouping items by product type (e.g., a pair of pants with other pants). However, little is known about how reta

  20. Effects of Early U.S. Compulsory Schooling Laws on Educational Assortative Mating: The Importance of Context.

    Science.gov (United States)

    Rauscher, Emily

    2015-08-01

    Modernization theory predicts that rising education should increase assortative mating by education and decrease sorting by race. Recent research suggests that effects of educational expansion depend on contextual factors, such as economic development. Using log-linear and log-multiplicative models of male household heads ages 36 to 75 in the 1940 U.S. census data--the first U.S. census with educational attainment information--I investigate how educational assortative mating changed with one instance of educational expansion: early U.S. compulsory school attendance laws. To improve on existing research and distinguish effects of expansion from changes due to particular years or cohorts, I capitalize on state variation in the timing of these compulsory laws (ranging from 1852 to 1918). Aggregate results suggest that compulsory laws had minimal impact on assortative mating. However, separate analyses by region (and supplemental analyses by race) reveal that assortative mating by education decreased with the laws in the South but increased in the North. Whether due to economic, legal, political, or other differences, results suggest that the implications of educational expansion for marital sorting depend on context. Contemporary implications are discussed in light of President Obama's 2012 suggested extension of compulsory schooling to age 18.

  1. Variation in sexual dimorphism and assortative mating do not predict genetic divergence in the sexually dimorphic Goodeid fish Girardinichthys multiradiatus

    Institute of Scientific and Technical Information of China (English)

    C.MAC(I)AS GARCIA; G SMITH; C.GONZ(A)LEZ ZUARTH; J.A.GRAVES; M.G.RITCHIE

    2012-01-01

    Sexual dimorphism is often used as a proxy for the intensity of sexual selection in comparative studies of sexual selection and diversification.The Mexican Goodeinae are a group of livebearing freshwater fishes with large variation between species in sexual dimorphism in body shape.Previously we found an association between variation in morphological sexual dimorphism between species and the amount of gene flow within populations in the Goodeinae.Here we have examined if morphological differentiation within a single dimorphic species is related to assortative mating or gene flow between populations.In the Amarillo fish Girardinichthys multiradiatus studies have shown that exaggerated male fins are targets of female preferences.We find that populations of the species differ in the level of sexual dimorphism displayed due to faster evolution of differences in male than female morphology.However,this does not predict variation in assortative mating tests in the laboratory; in fact differences in male morphology are negatively correlated with assortative mating.Microsatellite markers reveal significant genetic differences between populations.However,gene flow is not predicted by either morphological differences or assortative mating.Rather,it demonstrates a pattern of isolation by distance with greater differentiation between watersheds.We discuss the caveats of predicting behavioural and genetic divergence from so-called proxies of sexual selection.

  2. Accuracy in estimation of timber assortments and stem distribution - A comparison of airborne and terrestrial laser scanning techniques

    Science.gov (United States)

    Kankare, Ville; Vauhkonen, Jari; Tanhuanpää, Topi; Holopainen, Markus; Vastaranta, Mikko; Joensuu, Marianna; Krooks, Anssi; Hyyppä, Juha; Hyyppä, Hannu; Alho, Petteri; Viitala, Risto

    2014-11-01

    Detailed information about timber assortments and diameter distributions is required in forest management. Forest owners can make better decisions concerning the timing of timber sales and forest companies can utilize more detailed information to optimize their wood supply chain from forest to factory. The objective here was to compare the accuracies of high-density laser scanning techniques for the estimation of tree-level diameter distribution and timber assortments. We also introduce a method that utilizes a combination of airborne and terrestrial laser scanning in timber assortment estimation. The study was conducted in Evo, Finland. Harvester measurements were used as a reference for 144 trees within a single clear-cut stand. The results showed that accurate tree-level timber assortments and diameter distributions can be obtained, using terrestrial laser scanning (TLS) or a combination of TLS and airborne laser scanning (ALS). Saw log volumes were estimated with higher accuracy than pulpwood volumes. The saw log volumes were estimated with relative root-mean-squared errors of 17.5% and 16.8% with TLS and a combination of TLS and ALS, respectively. The respective accuracies for pulpwood were 60.1% and 59.3%. The differences in the bucking method used also caused some large errors. In addition, tree quality factors highly affected the bucking accuracy, especially with pulpwood volume.

  3. Parasite-stress promotes in-group assortative sociality: the cases of strong family ties and heightened religiosity.

    Science.gov (United States)

    Fincher, Corey L; Thornhill, Randy

    2012-04-01

    Throughout the world people differ in the magnitude with which they value strong family ties or heightened religiosity. We propose that this cross-cultural variation is a result of a contingent psychological adaptation that facilitates in-group assortative sociality in the face of high levels of parasite-stress while devaluing in-group assortative sociality in areas with low levels of parasite-stress. This is because in-group assortative sociality is more important for the avoidance of infection from novel parasites and for the management of infection in regions with high levels of parasite-stress compared with regions of low infectious disease stress. We examined this hypothesis by testing the predictions that there would be a positive association between parasite-stress and strength of family ties or religiosity. We conducted this study by comparing among nations and among states in the United States of America. We found for both the international and the interstate analyses that in-group assortative sociality was positively associated with parasite-stress. This was true when controlling for potentially confounding factors such as human freedom and economic development. The findings support the parasite-stress theory of sociality, that is, the proposal that parasite-stress is central to the evolution of social life in humans and other animals.

  4. A phylogenetic analysis of body size evolution in the Anolis roquet group (Sauria: Iguanidae): character displacement or size assortment?

    Science.gov (United States)

    Giannasi, N; Thorpe, R S; Malhotra, A

    2000-02-01

    The important role that competition plays in structuring communities is well documented; however, the role of competition in an evolutionary context remains unclear. Evolutionary investigations into the role of competition have often focused on the process of character displacement, and a good example of this is the evolution of body size in the Anolis lizards of the Caribbean islands. Previous work on the A. roquet species group has taken a phylogenetic approach and concluded that patterns of body size differences are not caused by character displacement but are a result of size assortment. Using a phylogenetic reconstruction based on the sequence of the cytochrome b gene (cyt-b) and ancestral character-state reconstruction methods, we investigated the roles of character displacement and size assortment. Our results indicated that size assortment alone was insufficient to explain the observed patterns of body size differences. Furthermore, we found that change in body size was associated with a change in allopatry/sympatry, thus supporting the character-displacement hypothesis. We conclude that patterns of body size differences in the A. roquet species group appear to be the result of a combination of character displacement and size assortment because character displacement was only found to be possible on three occasions.

  5. Association between autozygosity and major depression: stratification due to religious assortment.

    Science.gov (United States)

    Abdellaoui, Abdel; Hottenga, Jouke-Jan; Xiao, Xiangjun; Scheet, Paul; Ehli, Erik A; Davies, Gareth E; Hudziak, James J; Smit, Dirk J A; Bartels, Meike; Willemsen, Gonneke; Brooks, Andrew; Sullivan, Patrick F; Smit, Johannes H; de Geus, Eco J; Penninx, Brenda W J H; Boomsma, Dorret I

    2013-11-01

    The effects of inbreeding on the health of offspring can be studied by measuring genome-wide autozygosity as the proportion of the genome in runs of homozygosity (F roh) and relate F roh to outcomes such as psychiatric phenotypes. To successfully conduct these studies, the main patterns of variation for genome-wide autozygosity between and within populations should be well understood and accounted for. Within population variation was investigated in the Dutch population by comparing autozygosity between religious and non-religious groups. The Netherlands have a history of societal segregation and assortment based on religious affiliation, which may have increased parental relatedness within religious groups. Religion has been associated with several psychiatric phenotypes, such as major depressive disorder (MDD). We investigated whether there is an association between autozygosity and MDD, and the extent to which this association can be explained by religious affiliation. All F roh analyses included adjustment for ancestry-informative principal components (PCs) and geographic factors. Religious affiliation was significantly associated with autozygosity, showing that F roh has the ability to capture within population differences that are not captured by ancestry-informative PCs or geographic factors. The non-religious group had significantly lower F roh values and significantly more MDD cases, leading to a nominally significant negative association between autozygosity and depression. After accounting for religious affiliation, MDD was not associated with F roh, indicating that the relation between MDD and inbreeding was due to stratification. This study shows how past religious assortment and recent secularization can have genetic consequences in a relatively small country. This warrants accounting for the historical social context and its effects on genetic variation in association studies on psychiatric and other related traits.

  6. The structure of a food product assortment modulates the effect of providing choice on food intake.

    Science.gov (United States)

    Parizel, Odile; Sulmont-Rossé, Claire; Fromentin, Gilles; Delarue, Julien; Labouré, Hélène; Benamouzig, Robert; Marsset-Baglieri, Agnès

    2016-09-01

    Several authors showed that providing choice may increase food liking and food intake. However, the impact of choice may be modulated by assortment's characteristics, such as the number of alternatives or their dissimilarity. The present study compared the impact of choice on food liking and intake under the two following conditions: (1) when choosing a product to consume from among similar products versus dissimilar products; and (2) when choosing a product to consume from among pleasant products versus unpleasant products. Two experiments were carried out using the same design: the "apple puree" experiment (n = 80), where the volunteers choose from among similar products (apple purees varying in texture) and the "dessert" experiment (n = 80), where the volunteers choose from among dissimilar products (fruit dessert, dairy dessert, custard, pudding). During the first session, participants rated their liking for 12 products (apples purees or desserts). Then the participants were divided into a "pleasant" group (n = 40) in which volunteers were assigned three pleasant products, and an "unpleasant" group (n = 40) in which volunteers were assigned three unpleasant products. Finally, all of the volunteers participated in a choice session - volunteers were presented with their three assigned products and asked to choose one of the products, and a no-choice session - volunteers were served with one product that was randomly selected from among their three assigned products. Providing choice led to an increase in food liking in both experiments and an increase in food intake only for the desserts, namely only when the volunteers chose the product to consume from among "not too similar" alternatives. No effect of assortment's pleasantness was observed.

  7. The importance of peers: assimilation patterns among second-generation Turkish immigrants in Western Europe

    NARCIS (Netherlands)

    Ali, S.; Fokkema, C.M.

    2011-01-01

    The two dominant approaches to immigrant assimilation, segmented assimilation and "new" assimilation theories, have been successful at reporting and analyzing between-group differences in assimilation patterns. However, studies of assimilation generally do not address differences at the individual l

  8. Data assimilation in integrated hydrological modelling

    DEFF Research Database (Denmark)

    Rasmussen, Jørn

    are assimilated significant improvements are obtained in both stream flow and groundwater modeling. However, the successfulness of both the state updating and the parameter estimation is conditioned on a sufficiently large ensemble size, as spurious correlations often had a negative impact on the performance...... of the data assimilation algorithm. To reduce the impact of spurious correlation, an adaptive localization method is applied, which significantly improved the performance of the assimilation while reducing the computational requirements. Finally, as observation bias is common in groundwater head observations...

  9. The Acceleration of Immigrant Unhealthy Assimilation.

    Science.gov (United States)

    Giuntella, Osea; Stella, Luca

    2017-04-01

    It is well known that immigrants tend to be healthier than US natives and that this advantage erodes with time spent in the USA. However, we know less about the heterogeneity of these trajectories among arrival cohorts. Recent studies have shown that later arrival cohorts of immigrants have lower entry wages and experience less economic assimilation. In this paper, we investigate whether similar cohort effects can be observed in the weight assimilation of immigrants in the USA. Focusing on obesity, we show that more recent immigrant cohorts arrive with higher obesity rates and experience a faster 'unhealthy assimilation' in terms of weight gain. Copyright © 2016 John Wiley & Sons, Ltd.

  10. Data assimilation experiments with MPIESM climate model

    Directory of Open Access Journals (Sweden)

    Belyaev Konstantin

    2016-01-01

    Full Text Available Further development of data assimilation technique and its application in numerical experiments with state-of-the art Max Plank Institute Earth System model have been carried out. In particularly, the stability problem of assimilation is posed and discussed In the experiments the sea surface height data from archive Archiving, Validating and Interpolating Satellite Ocean have been used. All computations have been realized on cluster system of German Climate Computing Center. The results of numerical experiments with and without assimilation were recorded and analyzed. A special attention has been focused on the Arctic zone. It is shown that there is a good coincidence of model tendencies and independent data.

  11. Assimilative and non-assimilative color spreading in the watercolor configuration

    Directory of Open Access Journals (Sweden)

    Eiji eKimura

    2014-09-01

    Full Text Available A colored line flanking a darker contour will appear to spread its color onto an area enclosed by the line (watercolor effect. The watercolor effect has been characterized as an assimilative effect, but non-assimilative color spreading has also been demonstrated in the same spatial configuration; e.g., when a black inner contour (IC is paired with a blue outer contour (OC, yellow color spreading can be observed. To elucidate visual mechanisms underlying these different color spreading effects, this study investigated the effects of luminance ratio between the double contours on the induced color by systematically manipulating the IC and OC luminances (Experiment 1 as well as the background luminance (Experiment 2. The results showed that the luminance conditions suitable for assimilative and non-assimilative color spreading were nearly opposite. When the Weber contrast of the IC to the background luminances (IC contrast was smaller than that of the OC (OC contrast, the induced color became similar to the IC color (assimilative spreading. In contrast, when the OC contrast was smaller than or equal to the IC contrast, the induced color became yellow (non-assimilative spreading. Extending these findings, Experiment 3 showed that bilateral color spreading, e.g., assimilative spreading on one side and non-assimilative spreading on the other side, can also be observed in the watercolor configuration. These results suggest that the assimilative and non-assimilative spreading were mediated by different visual mechanisms. The properties of the assimilative spreading are consistent with the model proposed to account for neon color spreading [Grossberg, S. & Mingolla, E. (1985 Percept. Psychophys., 38, 141-171] and extended for the watercolor effect [Pinna, B., & Grossberg, S. (2005 J. Opt. Soc. Am. A, 22, 2207-2221]. However, the present results suggest that additional mechanisms are needed to account for the non-assimilative color spreading.

  12. IS ASSIMILATION THEORY DEAD? THE EFFECT OF ASSIMILATION ON ADOLESCENT WELL-BEING

    OpenAIRE

    Greenman, Emily; Xie, Yu

    2008-01-01

    The relationship between assimilation and the well-being of immigrant children has been the focus of debate in the recent sociological literature. Much of this work has questioned whether classical theories of immigrant adaptation, which assumed assimilation to be an integral part of the process of upward mobility for immigrants, are still applicable to today’s immigrant children. This study reevaluates the applicability of classical assimilation theory with a comprehensive empirical assessme...

  13. Development of a data assimilation algorithm

    DEFF Research Database (Denmark)

    Thomsen, Per Grove; Zlatev, Zahari

    2008-01-01

    efficiently observations in a large-scale model (for example, in order to obtain more reliable initial values). Variational data assimilation techniques are based on a combination of three very important components • numerical methods for solving differential equations, • splitting procedures......It is important to incorporate all available observations when large-scale mathematical models arising in different fields of science and engineering are used to study various physical and chemical processes. Variational data assimilation techniques can be used in the attempts to utilize...... assimilation technique is applied. Therefore, it is important to study the interplay between the three components of the variational data assimilation techniques as well as to apply powerful parallel computers in the computations. Some results obtained in the search for a good combination of numerical methods...

  14. ITERATIVE ALGORITHMS FOR DATA ASSIMILATION PROBLEMS

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Iterative algorithms for solving the data assimilation problems are considered, based on the main and adjoint equations. Spectral properties of the control operators of the problem are studied, the iterative algorithms are justified.

  15. ERP ASSIMILATION: AN END-USER APPROACH

    Directory of Open Access Journals (Sweden)

    Hurbean Luminita

    2013-07-01

    The paper discusses the ERP adoption based on the IT assimilation theory. The ERP lifecycle is associated with the IT assimilation steps. We propose a distribution of these steps along the lifecycle. Derived from the findings in the reviewed literature we will focus the cultural factors, in particular those related to the end-users (determined as a major impact factor in our previous study: Negovan et al., 2011. Our empirical study is centred on the end-users perspective and it tries to determine if and how their behaviour affects the achievement of the ERP assimilation steps. The paper reasons that organizations that understand the IT assimilation steps correlated to the ERP implementation critical factors are more likely to implement and use ERP successfully.

  16. At first glance, transparency enhances assimilation

    OpenAIRE

    2008-01-01

    We investigated the role of transparency, perceptual grouping, and presentation time on perceived lightness. Both transparency and perceptual grouping have been found to result in assimilation effects, but only for ambiguous stimulus displays and with specific attentional instructions. By varying the presentation times of displays with two partly overlapping transparent E-shaped objects, we measured assimilation in unambiguous stimulus displays and without specific attentional instructions. T...

  17. Wage and Occupational Assimilation by Skill Level

    OpenAIRE

    Alcobendas, Miguel Angel; Rodríguez-Planas, Núria; Vegas, Raquel

    2012-01-01

    While much of the literature on immigrants' assimilation has focused on countries with a large tradition of receiving immigrants and with flexible labor markets, very little is known on how immigrants adjust to other types of host economies. With its severe dual labor market, and an unprecedented immigration boom, Spain presents a quite unique experience to analyze immigrations' assimilation process. Using alternative datasets and methodologies, this paper provides evidence of a differential ...

  18. Data Assimilation: Making Sense of Earth Observation

    Directory of Open Access Journals (Sweden)

    William Albert Lahoz

    2014-05-01

    Full Text Available Climate change, air quality and environmental degradation are important societal challenges for the 21st Century. These challenges require an intelligent response from society, which in turn requires access to information about the Earth System. This information comes from observations and prior knowledge, the latter typically embodied in a model describing relationships between variables of the Earth System. Data assimilation provides an objective methodology to combine observational and model information to provide an estimate of the most likely state and its uncertainty for the whole Earth System. This approach adds value to the observations – by filling in the spatio-temporal gaps in observations; and to the model – by constraining it with the observations. In this review paper we motivate data assimilation as a methodology to fill in the gaps in observational information; illustrate the data assimilation approach with examples that span a broad range of features of the Earth System (atmosphere, including chemistry; ocean; land surface; and discuss the outlook for data assimilation, including the novel application of data assimilation ideas to observational information obtained using Citizen Science. Ultimately, a strong motivation of data assimilation is the many benefits it provides to users. These include: providing the initial state for weather and air quality forecasts; providing analyses and reanalyses for studying the Earth System; evaluating observations, instruments and models; assessing the relative value of elements of the Global Observing System (GOS; and assessing the added value of future additions to the GOS.

  19. Data assimilation for magnetohydrodynamics systems

    Science.gov (United States)

    Mendoza, O. Barrero; de Moor, B.; Bernstein, D. S.

    2006-05-01

    Prediction of solar storms has become a very important issue due to the fact that they can affect dramatically the telecommunication and electrical power systems at the earth. As a result, a lot of research is being done in this direction, space weather forecast. Magnetohydrodynamics systems are being studied in order to analyse the space plasma dynamics, and techniques which have been broadly used in the prediction of earth environmental variables like the Kalman filter (KF), the ensemble Kalman filter (EnKF), the extended Kalman filter (EKF), etc., are being studied and adapted to this new framework. The assimilation of a wide range of space environment data into first-principles-based global numerical models will improve our understanding of the physics of the geospace environment and the forecasting of its behaviour. Therefore, the aim of this paper is to study the performance of nonlinear observers in magnetohydrodynamics systems, namely, the EnKF.The EnKF is based on a Monte Carlo simulation approach for propagation of process and measurement errors. In this paper, the EnKF for a nonlinear two-dimensional magnetohydrodynamic (2D-MHD) system is considered. For its implementation, two software packages are merged, namely, the Versatile Advection Code (VAC) written in Fortran and Matlab of Mathworks. The 2D-MHD is simulated with the VAC code while the EnKF is computed in Matlab. In order to study the performance of the EnKF in MHD systems, different number of measurement points as well as ensemble members are set.

  20. Assortment of the plants in the Medieval diet in Czech countries (based on archaeobotanical finds).

    Science.gov (United States)

    Culíková, V

    2000-01-01

    The finds of remains of useful plants in archaeological objects were drawing attention already in the last century. However, it was not until after the World War II, in relation with renovation of historical cores of the towns, when a separate branch of the botany--archaeobotany constituted. In the Czech Republic it was E. Opravil who was the first to become engaged in a systematic archaeobotanical research at the beginning of the 60's. All the vegetal remains--fruits and seeds on the first place as well as pollen grains from prehistoric times to the post-medieval period, are the subjects of archaeobotany. The medieval waste pits are the richest sources of the vegetal remains. They contain a lot of diasporas of cultural as well as wild plants. The remains of useful plants are an authentic document of the vegetal component of diet. Even though some vegetal species, such as for example garlic, onion or stalk-plants, about whose cultivation we are informed from literature, occur only seldom, there appeared also the species not mentioned in literature. All the basic cereals have been known in our country already since the early Middle Ages. Wheat (Triticum aestivum) and rye (Secale cereale), as well as millet (Panicum miliaceum) that, along with buckwheat (Fagopyrum esculentum), were replaced by potatoes in the modern times were the most important. Also leguminous plants were of great importance in the diet even though their charred seeds seldom preserved. Remains of oil plants such as hemp (Cannabis sativa), flax (Linum usitatissimum) and poppy (Papaver somniferum) preserved well. It was successfully proved that cucumber (Cucumis sativus), among other numerous kinds of vegetables, was introduced by the Slavs already in the 8th century in Moravia and in the 9th century in Bohemia. The assortment of fruit was rich--especially the assortment of cultivated fruit. Among the imported kinds of fruit the first place occupied figs (Ficus carica), from the numerous finds it can

  1. The social context of assimilation: testing implications of segmented assimilation theory.

    Science.gov (United States)

    Xie, Yu; Greenman, Emily

    2011-05-01

    Segmented assimilation theory has been a popular explanation for the diverse experiences of assimilation among new waves of immigrants and their children. While the theory has been interpreted in many different ways, we emphasize its implications for the important role of social context: both processes and consequences of assimilation should depend on the local social context in which immigrants are embedded. We derive empirically falsifiable hypotheses about the interaction effects between social context and assimilation on immigrant children's well-being. We then test the hypotheses using data from the National Longitudinal Study of Adolescent Health. Our empirical analyses yield two main findings. First, for immigrant adolescents living in non-poverty neighborhoods, we find assimilation to be positively associated with educational achievement and psychological well-being but also positively associated with at-risk behavior. Second, there is little empirical evidence supporting our hypotheses derived from segmented assimilation theory. We interpret these results to mean that future research would be more fruitful focusing on differential processes of assimilation rather than differential consequences of assimilation.

  2. Assimilation of gridded GRACE terrestrial water storage estimates in the North American Land Data Assimilation System

    Science.gov (United States)

    The objective of the North American Land Data Assimilation System (NLDAS) is to provide best-available estimates of near surface meteorological conditions and soil hydrological status for the Continental United States. The first two phases of NLDAS, however, have not included the assimilation of rem...

  3. IS ASSIMILATION THEORY DEAD? THE EFFECT OF ASSIMILATION ON ADOLESCENT WELL-BEING.

    Science.gov (United States)

    Greenman, Emily; Xie, Yu

    2008-03-01

    The relationship between assimilation and the well-being of immigrant children has been the focus of debate in the recent sociological literature. Much of this work has questioned whether classical theories of immigrant adaptation, which assumed assimilation to be an integral part of the process of upward mobility for immigrants, are still applicable to today's immigrant children. This study reevaluates the applicability of classical assimilation theory with a comprehensive empirical assessment of the relationship between assimilation and the well-being of Hispanic and Asian immigrant adolescents. Using Add Health data, we examine the effect of different aspects of assimilation on educational achievement, psychological well-being, and at-risk behaviors. We find that the effect of assimilation varies greatly depending on the ethnic group and outcome under consideration, but that it is generally related to both greater academic achievement and more at-risk behavior. We conclude that assimilation theory is still relevant, but suggest an interpretation that emphasizes a process of decreasing differences between groups rather than either detrimental or beneficial effects of assimilation.

  4. Efficient Methods to Assimilate Satellite Retrievals Based on Information Content. Part 2; Suboptimal Retrieval Assimilation

    Science.gov (United States)

    Joiner, J.; Dee, D. P.

    1998-01-01

    One of the outstanding problems in data assimilation has been and continues to be how best to utilize satellite data while balancing the tradeoff between accuracy and computational cost. A number of weather prediction centers have recently achieved remarkable success in improving their forecast skill by changing the method by which satellite data are assimilated into the forecast model from the traditional approach of assimilating retrievals to the direct assimilation of radiances in a variational framework. The operational implementation of such a substantial change in methodology involves a great number of technical details, e.g., pertaining to quality control procedures, systematic error correction techniques, and tuning of the statistical parameters in the analysis algorithm. Although there are clear theoretical advantages to the direct radiance assimilation approach, it is not obvious at all to what extent the improvements that have been obtained so far can be attributed to the change in methodology, or to various technical aspects of the implementation. The issue is of interest because retrieval assimilation retains many practical and logistical advantages which may become even more significant in the near future when increasingly high-volume data sources become available. The central question we address here is: how much improvement can we expect from assimilating radiances rather than retrievals, all other things being equal? We compare the two approaches in a simplified one-dimensional theoretical framework, in which problems related to quality control and systematic error correction are conveniently absent. By assuming a perfect radiative transfer model and perfect knowledge of radiance and background error covariances, we are able to formulate a nonlinear local error analysis for each assimilation method. Direct radiance assimilation is optimal in this idealized context, while the traditional method of assimilating retrievals is suboptimal because it

  5. Assortative mating among animals of captive and wild origin following experimental conservation releases.

    Science.gov (United States)

    Slade, Brendan; Parrott, Marissa L; Paproth, Aleisha; Magrath, Michael J L; Gillespie, Graeme R; Jessop, Tim S

    2014-11-01

    Captive breeding is a high profile management tool used for conserving threatened species. However, the inevitable consequence of generations in captivity is broad scale and often-rapid phenotypic divergence between captive and wild individuals, through environmental differences and genetic processes. Although poorly understood, mate choice preference is one of the changes that may occur in captivity that could have important implications for the reintroduction success of captive-bred animals. We bred wild-caught house mice for three generations to examine mating patterns and reproductive outcomes when these animals were simultaneously released into multiple outdoor enclosures with wild conspecifics. At release, there were significant differences in phenotypic (e.g. body mass) and genetic measures (e.g. Gst and F) between captive-bred and wild adult mice. Furthermore, 83% of offspring produced post-release were of same source parentage, inferring pronounced assortative mating. Our findings suggest that captive breeding may affect mating preferences, with potentially adverse implications for the success of threatened species reintroduction programmes.

  6. Collaboration in sensor network research: an in-depth longitudinal analysis of assortative mixing patterns.

    Science.gov (United States)

    Pepe, Alberto; Rodriguez, Marko A

    2010-09-01

    Many investigations of scientific collaboration are based on statistical analyses of large networks constructed from bibliographic repositories. These investigations often rely on a wealth of bibliographic data, but very little or no other information about the individuals in the network, and thus, fail to illustrate the broader social and academic landscape in which collaboration takes place. In this article, we perform an in-depth longitudinal analysis of a relatively small network of scientific collaboration (N = 291) constructed from the bibliographic record of a research centerin the development and application of wireless and sensor network technologies. We perform a preliminary analysis of selected structural properties of the network, computing its range, configuration and topology. We then support our preliminary statistical analysis with an in-depth temporal investigation of the assortative mixing of selected node characteristics, unveiling the researchers' propensity to collaborate preferentially with others with a similar academic profile. Our qualitative analysis of mixing patterns offers clues as to the nature of the scientific community being modeled in relation to its organizational, disciplinary, institutional, and international arrangements of collaboration.

  7. International migration and educational assortative mating in Mexico and the United States.

    Science.gov (United States)

    Choi, Kate H; Mare, Robert D

    2012-05-01

    This paper examines the relationship between migration and marriage by describing how the distributions of marital statuses and assortative mating patterns vary by individual and community experiences of migration. In Mexico, migrants and those living in areas with high levels of out-migration are more likely to be in heterogamous unions. This is because migration increases the relative attractiveness of single return migrants while disproportionately reducing the number of marriageable men in local marriage markets. In the United States, the odds of homogamy are lower for migrants compared with nonmigrants; however, they do not vary depending on the volume of migration in communities. Migrants are more likely than nonmigrants to "marry up" educationally because the relatively small size of this group compels them to expand their pool of potential spouses to include nonmigrants, who tend to be better educated than they are. Among migrants, the odds of marrying outside of one's education group increase the most among the least educated. In Mexican communities with high rates of out-migration, the odds of marrying outside of one's education group are highest among those with the highest level of education. These findings suggest that migration disrupts preferences and opportunities for homogamy by changing social arrangements and normative climates.

  8. PHYLLOXERA-RESISTANT HYBRID FORM OF GRAPES OF TECHNICAL SORTS FOR IMPROVING THE ASSORTMENT

    Directory of Open Access Journals (Sweden)

    Larkina M. D.

    2015-10-01

    Full Text Available Many old varieties of grapes do not meet modern requirements, so there is a need for improved assortment of new high-quality varieties. The translation of the vineyards of the black sea coast of the Krasnodar region on inoculated culture is not fully decided the fate of the viticulture of the area. Weak resistance of American rootstocks to increased content of calcium and salts in the soil, caused the weakening of the bushes, reducing the vigor of the shoots, their maturation and yield of grape plantations in some areas of the district while reducing their quality indicators. In this regard, the development of new high-yielding varieties suitable for own-rooted viticulture remains the most urgent task for breeders. The article shows the potential of many years of breeding work and study of grapes of technical varieties in Anapa Zone Station, tolerant to phylloxera and resistant to fungal diseases and frost, with high quality products and gives a brief description of some prominent grape varieties

  9. 分类觅食人工鱼群算法%Assorted foraging artificial fish swarm algorithm

    Institute of Scientific and Technical Information of China (English)

    李辉

    2016-01-01

    针对人工鱼群算法搜索速度和搜索精度不高,且对高维问题寻优能力较差等缺点,提出了一种改进的人工鱼群算法——分类觅食人工鱼群算法(Assorted Foraging Artificial Fish Swarm Algorithm-AFAFSA).该算法对执行觅食行为的个体分类进行更新,既保持种群的多样性又通过觅食行为加快算法的搜索速度,同时加入禁忌的思想帮助算法跳出局部最优,提高算法的性能.通过一系列的测试试验,发现改进算法在收敛速度和精度方面都有了明显的提高,对于高维问题有也具有较好的寻优能力.

  10. Correlation of CAG repeat length between the maternal and paternal allele of the Huntingtin gene: evidence for assortative mating

    Directory of Open Access Journals (Sweden)

    Wassink Tom

    2011-10-01

    Full Text Available Abstract Triplet repeats contribute to normal variation in behavioral traits and when expanded, cause brain disorders. While Huntington's Disease is known to be caused by a CAG triplet repeat in the gene Huntingtin, the effect of CAG repeats on brain function below disease threshold has not been studied. The current study shows a significant correlation between the CAG repeat length of the maternal and paternal allele in the Huntingtin gene among healthy subjects, suggesting assortative mating.

  11. A computer model allowing maintenance of large amounts of genetic variability in Mendelian populations. II. The balance of forces between linkage and random assortment.

    Science.gov (United States)

    Wills, C; Miller, C

    1976-02-01

    It is shown, through theory and computer simulations of outbreeding Mendelian populations, that there may be conditions under which a balance is struck between two facotrs. The first is the advantage of random assortment, which will, when multilocus selection is for intermediate equilibrium values, lead to higher average heterozygosity than when linkage is introduced. There is some indication that random assortment is also advantageous when selection is toward a uniform distribution of equilibrium values. The second factor is the advantage of linkage between loci having positive epistatic interactions. When multilocus selection is for a bimodal distribution of equilibrium values an early advantage of random assortment is replaced by a later disadvantage. Linkage disequilibrium, which in finite populations is increased only by random or selective sampling, may hinder the movement of alleles to their selective equilibria, thus leading to the advantage of random assortment.-Some consequences of this approach to the structure of natural populations are discussed.

  12. CHOLESTEROL ASSIMILATION BY COMMERCIAL YOGHURT STARTER CULTURES

    Directory of Open Access Journals (Sweden)

    Małgorzata Ziarno

    2007-03-01

    Full Text Available The ability to in vitro cholesterol level reduction in laboratory media has been shown for numerous strains of lactic acid bacteria, but not for all strains of lactic bacteria used in the dairy industry. The aim of this work was the determination of the ability of selected thermophilic lactic acid bacteria to cholesterol assimilation during 24 h culture in MRS broth. Commercial starter cultures showed various ability to cholesterol assimilation from laboratory medium. In case of starter cultures used for production of traditional yoghurt, consisting of Streptococcus salivarius subsp. thermophilus and Lactobacillus delbrueckii subsp. bulgaricus, the quantity of assimilated cholesterol did not exceed 27% of its initial contents (0.7 g in 1 dm3. Starter cultures used for bioyoghurt production, containing also probiotic strains (came from Lactobacillus acidophilus species or Bifidobacterium genus assimilated from almost 18% to over 38% of cholesterol. For one monoculture of Lb. acidophilus, cholesterol assimilation ability of 49-55% was observed, despite that the number of bacterial cells in this culture was not different from number of bacteria in other cultures.

  13. Assortativity and the Probability of Epidemic Extinction: A Case Study of Pandemic Influenza A (H1N1-2009

    Directory of Open Access Journals (Sweden)

    Hiroshi Nishiura

    2011-01-01

    Full Text Available Unlike local transmission of pandemic influenza A (H1N1-2009, which was frequently driven by school children, most cases identified in long-distance intranational and international travelers have been adults. The present study examines the relationship between the probability of temporary extinction and the age-dependent next-generation matrix, focusing on the impact of assortativity. Preferred mixing captures as a good approximation the assortativity of a heterogeneously mixing population. We show that the contribution of a nonmaintenance host (i.e., a host type which cannot sustain transmission on its own to the risk of a major epidemic is greatly diminished as mixing patterns become more assortative, and in such a scenario, a higher proportion of non-maintenance hosts among index cases elevates the probability of extinction. Despite the presence of various other epidemiological factors that undoubtedly influenced the delay between first importations and the subsequent epidemic, these results suggest that the dominance of adults among imported cases represents one of the possible factors explaining the delays in geographic spread observed during the recent pandemic.

  14. Temporal variation in size-assortative mating and male mate choice in a spider with amphisexual care

    Science.gov (United States)

    Moura, Rafael R.; Gonzaga, Marcelo O.

    2017-04-01

    Males should be more selective when they have a high investment in reproduction, especially in species with biparental or paternal care. In this context, male mate choice can promote size-assortative mating (SAM) when (1) large males win intrasexual disputes, (2) large females are more fecund, and (3) males prefer larger females to smaller ones. In the spider Manogea porracea, males exhibit high reproductive investment by building their webs above those of females and exhibiting extended care of offspring in the absence of females. Under these circumstances, we expect the occurrence of SAM and male preference for large females. Herein, we performed observations and experiments in the field to evaluate the hypotheses that (1) M. porracea mates assortatively by size and (2) SAM is influenced by male mate choice. Furthermore, we measured variables that could affect mating patterns, the sex ratios, and densities of both sexes. Pairing in M. porracea was positively size-assortative in 2012, but not in 2013. Large males won most disputes for mates and preferred larger females, which produced more eggs. The inconsistency in detection of SAM was due to population dynamics, namely variations in sex ratio and population density across the breeding season. Furthermore, we found that the significance of male mate choice on sexual selection of body size in M. porracea strongly depends on the competition intensity for mating opportunities. The traditional sexual selection hypothesis of SAM needs to be reviewed and must include measures of competition intensity.

  15. Implicit assimilation for marine ecological models

    Science.gov (United States)

    Weir, B.; Miller, R.; Spitz, Y. H.

    2012-12-01

    We use a new data assimilation method to estimate the parameters of a marine ecological model. At a given point in the ocean, the estimated values of the parameters determine the behaviors of the modeled planktonic groups, and thus indicate which species are dominant. To begin, we assimilate in situ observations, e.g., the Bermuda Atlantic Time-series Study, the Hawaii Ocean Time-series, and Ocean Weather Station Papa. From there, we estimate the parameters at surrounding points in space based on satellite observations of ocean color. Given the variation of the estimated parameters, we divide the ocean into regions meant to represent distinct ecosystems. An important feature of the data assimilation approach is that it refines the confidence limits of the optimal Gaussian approximation to the distribution of the parameters. This enables us to determine the ecological divisions with greater accuracy.

  16. Strong assortative mating by diet, color, size, and morphology but limited progress toward sympatric speciation in a classic example: Cameroon crater lake cichlids.

    Science.gov (United States)

    Martin, Christopher H

    2013-07-01

    Models predict that sympatric speciation depends on restrictive parameter ranges, such as sufficiently strong disruptive selection and assortative mating, but compelling examples in nature have rarely been used to test these predictions. I measured the strength of assortative mating within a species complex of Tilapia in Lake Ejagham, Cameroon, a celebrated example of incipient sympatric adaptive radiation. This species complex is in the earliest stages of speciation: morphological and ecological divergence are incomplete, species differ primarily in breeding coloration, and introgression is common. I captured 27 mated pairs in situ and measured the diet, color, size, and morphology of each individual. I found strong assortative mating by color, size, head depth, and dietary source of benthic or pelagic prey along two independent dimensions of assortment. Thus, Ejagham Tilapia showed strong assortative mating most conducive to sympatric speciation. Nonetheless, in contrast to a morphologically bimodal Sarotherodon cichlid species pair in the lake, Ejagham Tilapia show more limited progress toward speciation, likely due to insufficient strength of disruptive selection on morphology estimated in a previous study (γ = 0.16). This supports the predicted dependence of sympatric speciation on strong assortment and strong disruptive selection by examining a potentially stalled example in nature.

  17. Multi-locus assortment (MLA for transgene dispersal and elimination in mosquito populations.

    Directory of Open Access Journals (Sweden)

    Jason L Rasgon

    Full Text Available BACKGROUND: Replacement of wild-type mosquito populations with genetically modified versions is being explored as a potential strategy to control vector-borne diseases. Due to lower expected relative fitness of transgenic individuals, transgenes must be driven into populations for these scenarios to be successful. Several gene drive mechanisms exist in a theoretical sense but none are currently workable in mosquitoes. Even if strategies were workable, it would be very difficult to recall released transgenes in the event of unforeseen consequences. What is needed is a way to test transgenes in the field for feasibility, efficacy and safety prior to releasing an active drive mechanism. METHODOLOGY/PRINCIPAL FINDINGS: We outline a method, termed Multi-locus assortment (MLA, to spread transgenes into vector populations by the release of genetically-modified mosquitoes carrying multiple stable transgene inserts. Simulations indicate that [1] insects do not have to carry transgenes at more than 4 loci, [2] transgenes can be maintained at high levels by sequential small releases, the frequency of which depends on the construct fitness cost, and [3] in the case of unforeseen negative non-target effects, transgenes can be eliminated from the population by halting transgenic releases and/or mass releases of wild-type insects. We also discuss potential methods to create MLA mosquito strains in the laboratory. CONCLUSIONS/SIGNIFICANCE: While not as efficient as active drive mechanisms, MLA has other advantages: [1] MLA strains can be constructed for some mosquito species with currently-available technology, [2] MLA will allow the ecological components of transgenic mosquito releases to be tested before actual gene drive mechanisms are ready to be deployed, [3] since MLA is not self-propagating, the risk of an accidental premature release into nature is minimized, and [4] in the case that active gene drive mechanisms prove impossible to develop, the MLA

  18. Testing the niche apportionment hypothesis with parasite communities: is random assortment always the rule?

    Science.gov (United States)

    Muñoz, G; Mouillot, D; Poulin, R

    2006-05-01

    Niche apportionment models have only been applied once to parasite communities. Only the random assortment model (RA), which indicates that species abundances are independent from each other and that interspecific competition is unimportant, provided a good fit to 3 out of 6 parasite communities investigated. The generality of this result needs to be validated, however. In this study we apply 5 niche apportionment models to the parasite communities of 14 fish species from the Great Barrier Reef. We determined which model fitted the data when using either numerical abundance or biomass as an estimate of parasite abundance, and whether the fit of niche apportionment models depends on how the parasite community is defined (e.g. ecto, endoparasites or all parasites considered together). The RA model provided a good fit for the whole community of parasites in 7 fish species when using biovolume (as a surrogate of biomass) as a measure of species abundance. The RA model also fitted observed data when ecto- and endoparasites were considered separately, using abundance or biovolume, but less frequently. Variation in fish sizes among species was not associated with the probability of a model fitting the data. Total numerical abundance and biovolume of parasites were not related across host species, suggesting that they capture different aspects of abundance. Biovolume is not only a better measurement to use with niche-orientated models, it should also be the preferred descriptor to analyse parasite community structure in other contexts. Most of the biological assumptions behind the RA model, i.e. randomness in apportioning niche space, lack of interspecific competition, independence of abundance among different species, and species with variable niches in changeable environments, are in accordance with some previous findings on parasite communities. Thus, parasite communities may generally be unsaturated with species, with empty niches, and interspecific interactions may

  19. Educational attainment influences levels of homozygosity through migration and assortative mating.

    Directory of Open Access Journals (Sweden)

    Abdel Abdellaoui

    Full Text Available Individuals with a higher education are more likely to migrate, increasing the chance of meeting a spouse with a different ancestral background. In this context, the presence of strong educational assortment can result in greater ancestry differences within more educated spouse pairs, while less educated individuals are more likely to mate with someone with whom they share more ancestry. We examined the association between educational attainment and F roh (= the proportion of the genome consisting of runs of homozygosity [ROHs] in ~2,000 subjects of Dutch ancestry. The subjects' own educational attainment showed a nominally significant negative association with F roh (p = .045, while the contribution of parental education to offspring F roh was highly significant (father: p < 10(-5; mother: p = 9 × 10(-5, with more educated parents having offspring with fewer ROHs. This association was significantly and fully mediated by the physical distance between parental birthplaces (paternal education: pmediation = 2.4 × 10(-4; maternal education: pmediation = 2.3 × 10(-4, which itself was also significantly associated with F roh (p = 9 × 10(-5. Ancestry-informative principal components from the offspring showed a significantly decreasing association with geography as parental education increased, consistent with the significantly higher migration rates among more educated parents. Parental education also showed a high spouse correlation (Spearman's ρ = .66, p = 3 × 10(-262. We show that less educated parents are less likely to mate with the more mobile parents with a higher education, creating systematic differences in homozygosity due to ancestry differences not directly captured by ancestry-informative principal components (PCs. Understanding how behaviors influence the genomic structure of a population is highly valuable for studies on the genetic etiology of behavioral, cognitive, and social traits.

  20. Molecular Assortment of Lens Species with Different Adaptations to Drought Conditions Using SSR Markers.

    Directory of Open Access Journals (Sweden)

    Dharmendra Singh

    Full Text Available The success of drought tolerance breeding programs can be enhanced through molecular assortment of germplasm. This study was designed to characterize molecular diversity within and between Lens species with different adaptations to drought stress conditions using SSR markers. Drought stress was applied at seedling stage to study the effects on morpho-physiological traits under controlled condition, where tolerant cultivars and wilds showed 12.8-27.6% and 9.5-23.2% reduction in seed yield per plant respectively. When juxtaposed to field conditions, the tolerant cultivars (PDL-1 and PDL-2 and wild (ILWL-314 and ILWL-436 accessions showed 10.5-26.5% and 7.5%-15.6% reduction in seed yield per plant, respectively under rain-fed conditions. The reductions in seed yield in the two tolerant cultivars and wilds under severe drought condition were 48-49% and 30.5-45.3% respectively. A set of 258 alleles were identified among 278 genotypes using 35 SSR markers. Genetic diversity and polymorphism information contents varied between 0.321-0.854 and 0.299-0.836, with mean value of 0.682 and 0.643, respectively. All the genotypes were clustered into 11 groups based on SSR markers. Tolerant genotypes were grouped in cluster 6 while sensitive ones were mainly grouped into cluster 7. Wild accessions were separated from cultivars on the basis of both population structure and cluster analysis. Cluster analysis has further grouped the wild accessions on the basis of species and sub-species into 5 clusters. Physiological and morphological characters under drought stress were significantly (P = 0.05 different among microsatellite clusters. These findings suggest that drought adaptation is variable among wild and cultivated genotypes. Also, genotypes from contrasting clusters can be selected for hybridization which could help in evolution of better segregants for improving drought tolerance in lentil.

  1. Molecular Assortment of Lens Species with Different Adaptations to Drought Conditions Using SSR Markers.

    Science.gov (United States)

    Singh, Dharmendra; Singh, Chandan Kumar; Tomar, Ram Sewak Singh; Taunk, Jyoti; Singh, Ranjeet; Maurya, Sadhana; Chaturvedi, Ashish Kumar; Pal, Madan; Singh, Rajendra; Dubey, Sarawan Kumar

    2016-01-01

    The success of drought tolerance breeding programs can be enhanced through molecular assortment of germplasm. This study was designed to characterize molecular diversity within and between Lens species with different adaptations to drought stress conditions using SSR markers. Drought stress was applied at seedling stage to study the effects on morpho-physiological traits under controlled condition, where tolerant cultivars and wilds showed 12.8-27.6% and 9.5-23.2% reduction in seed yield per plant respectively. When juxtaposed to field conditions, the tolerant cultivars (PDL-1 and PDL-2) and wild (ILWL-314 and ILWL-436) accessions showed 10.5-26.5% and 7.5%-15.6% reduction in seed yield per plant, respectively under rain-fed conditions. The reductions in seed yield in the two tolerant cultivars and wilds under severe drought condition were 48-49% and 30.5-45.3% respectively. A set of 258 alleles were identified among 278 genotypes using 35 SSR markers. Genetic diversity and polymorphism information contents varied between 0.321-0.854 and 0.299-0.836, with mean value of 0.682 and 0.643, respectively. All the genotypes were clustered into 11 groups based on SSR markers. Tolerant genotypes were grouped in cluster 6 while sensitive ones were mainly grouped into cluster 7. Wild accessions were separated from cultivars on the basis of both population structure and cluster analysis. Cluster analysis has further grouped the wild accessions on the basis of species and sub-species into 5 clusters. Physiological and morphological characters under drought stress were significantly (P = 0.05) different among microsatellite clusters. These findings suggest that drought adaptation is variable among wild and cultivated genotypes. Also, genotypes from contrasting clusters can be selected for hybridization which could help in evolution of better segregants for improving drought tolerance in lentil.

  2. Global Assimilation of Ionospheric Measurements (GAIM)

    Science.gov (United States)

    Schunk, R. W.; Scherliess, L.; Sojka, J. J.; Thompson, D. C.; Anderson, D. N.; Codrescu, M.; Minter, C.; Fuller-Rowell, T. J.; Heelis, R. A.; Hairston, M.; Howe, B. M.

    2001-12-01

    The ionosphere is a highly dynamic medium that can vary significantly from day to day and from hour to hour at a given location, and these variations can have detrimental effects on military and civilian systems. In an effort to minimize or circumvent the detrimental effects, a physics-based data assimilation model of the ionosphere and neutral atmosphere is under development with funding from the DoD MURI program. Two university consortia are involved, with USU and USC as the lead institutions. When completed, the GAIM (Global Assimilation of Ionospheric Measurements) model will provide specifications and forecasts on a spatial grid that can be global, regional, or local (50 km x 50 km). GAIM will use a physics-based ionosphere-plasmasphere model and a Kalman filter as a basis for assimilating a diverse set of real-time (or near real-time) measurements. Some of the data to be assimilated include in situ density measurements from satellites, ionosonde electron density profiles, occultation data, ground-based GPS TECs, TECs between ground stations and LEO satellites with radio beacons, and line-of-sight UV emissions from selected satellites. The resulting specifications and forecasts will be in the form of 3-dimensional electron density distributions from 90 km to geosynchronous altitude (35,000 km). An initial form of GAIM already exists and recent results from the USU consortium will be presented.

  3. Phonological Assimilation and Visual Word Recognition

    Science.gov (United States)

    Lee, Yang; Moreno, Miguel A.; Park, Hyeongsaeng; Carello, Claudia; Turvey, Michael T.

    2006-01-01

    Are the visual word-processing tasks of naming and lexical decision sensitive to systematic phonological properties that may or may not be specified in the spelling? Two experiments with Hangul, the alphabetic orthography of Korea, were directed at the effects of the phonological process of assimilation whereby one articulation changes to conform…

  4. At first glance, transparency enhances assimilation

    NARCIS (Netherlands)

    Koning, A.R.; Weert, C.M.M. de; Lier, R.J. van

    2008-01-01

    We investigated the role of transparency, perceptual grouping, and presentation time on perceived lightness. Both transparency and perceptual grouping have been found to result in assimilation effects, but only for ambiguous stimulus displays and with specific attentional instructions. By varying th

  5. Context effect in assimilation and contrast

    NARCIS (Netherlands)

    Weert, C.M.M. de; Koning, A.R.; Lier, R.J. van

    2005-01-01

    We have systematically studied the change of lightness appearance in an ambiguous visual pattern. Fuchs (1923 Zeitschrift für Psychologie 92 249 - 325) found that differently coloured parts assimilate, whereas Agostini et al (1993 Perception 22 263 - 272) described the opposite effect: contrast betw

  6. Data Assimilation With Regional Lagrangian Models

    Science.gov (United States)

    1999-09-30

    Journal of Marine Systems . RESULTS We are able to fit the inviscid Lagrangian model with synthetic Lagrangian data for short periods of time (1-2 days...Mead and A.F. Bennett, 1999. Towards regional assimilation of data: The Lagrangian form of the reduced gravity model and its inverse, (submitted), Journal of Marine Systems .

  7. A new sequential data assimilation method

    Institute of Scientific and Technical Information of China (English)

    HAN YueQi; ZHANG YaoCun; WANG YunFeng; YE Song; FANG HanXian

    2009-01-01

    A new sequential data assimilation method named "Monte Carlo H∞ filter" is Introduced based on H∞ filter technique and Monte Carlo method in this paper. This method applies to nonlinear systems in condition of lacking the statistical properties of observational errors. In order to compare the assimilation capability of Monte Carlo H= filter with that of the ensemble Kalman filter (EnKF) in solving practical problems caused by temporal correlation or spatial correlation of observational errors, two numerical experiments are performed by using Lorenz (1963) system and shallow-water equations respectively. The result is that the assimilation capability of the new method is better than that of EnKF method. It is also shown that Monte Carlo H∞ filter assimilation method is effective and suitable to nonlinear systems in that it does not depend on the statistical properties of observational errors and has better robustnesa than EnKF method when the statistical properties of observational errors are varying. In addition, for the new method, the smallest level factor founded by search method is flow-dependent.

  8. Ensemble Assimilation of Nonconventional Observations for Nowcasting

    Science.gov (United States)

    2013-09-30

    microphysical fields (qc - cloud liquid water mixing ratio, qi – cloud ice mixing ratio, qr – rain water mixing ratio, qs – snow ice mixing ratio, and qg...L. Wei, W. Gu, J. Gong , and Q. Zhao, 2010: A 3.5-dimensional Variational Method for Doppler Radar Data Assimilation and Its Application to

  9. A flexible Open Data Assimilation framework

    Science.gov (United States)

    van Velzen, Nils; Ridler, Marc E.; Altaf, Umer; Madsen, Henrik; Heemink, Arnold; Dijkzeul, Johan

    2015-04-01

    Accurate and reliable real-time hydrological forecasts are essential for protection against water-related hazards, operation of infrastructure, and water resources management. Recent advances in radar rainfall estimation and forecasting, numerical weather predictions, satellite and in-situ monitoring, and faster computing facilities are opening up new opportunities in real-time hydrological forecasting. More effective use of the different information sources via data assimilation will provide the basis for producing more accurate and more reliable forecasts. In this regard, development and implementation of robust and computationally efficient data assimilation algorithms that are feasible for real-time applications remains one of the key challenges. The implementation of data assimilation techniques is traditionally in a model specific form. The disadvantage of this approach is the need to have in-depth knowledge of the numerical core computations and it does not allow to freely experiment with data assimilation algorithms and measurement sources without the need of additional programming. We present a more flexible approach to setup a forecasting system. The OpenDA data assimilation framework contains many state of the art data assimilation algorithms to easily set up a forecasting system. The setup of the framework allows users to select and experiment with various algorithms. OpenDA defines an interface between model and data assimilation algorithms. This interface only needs to be implemented once for a particular model. The OpenDA model interface is already implemented for various models. Besides these models it is very easy to couple models that are already implementing the Open Model Interface (OpenMI) to OpenDA using the generic OpenMI-OpenDA coupler. Using a synthetic test case we demonstrate the capabilities of the proposed approach using OpenMI and OpenDA. We use the MIKE SHE distributed and integrated hydrological modeling system to demonstrate how

  10. OpenDA-NEMO framework for ocean data assimilation

    NARCIS (Netherlands)

    Van Velzen, C.; Altaf, M.U.; Verlaan, M.

    2016-01-01

    Data assimilation methods provide a means to handle the modeling errors and uncertainties in sophisticated ocean models. In this study, we have created an OpenDA-NEMO framework unlocking the data assimilation tools available in OpenDA for use with NEMO models. This includes data assimilation methods

  11. Regulation of nitrate assimilation in cyanobacteria.

    Science.gov (United States)

    Ohashi, Yoshitake; Shi, Wei; Takatani, Nobuyuki; Aichi, Makiko; Maeda, Shin-ichi; Watanabe, Satoru; Yoshikawa, Hirofumi; Omata, Tatsuo

    2011-02-01

    Nitrate assimilation by cyanobacteria is inhibited by the presence of ammonium in the growth medium. Both nitrate uptake and transcription of the nitrate assimilatory genes are regulated. The major intracellular signal for the regulation is, however, not ammonium or glutamine, but 2-oxoglutarate (2-OG), whose concentration changes according to the change in cellular C/N balance. When nitrogen is limiting growth, accumulation of 2-OG activates the transcription factor NtcA to induce transcription of the nitrate assimilation genes. Ammonium inhibits transcription by quickly depleting the 2-OG pool through its metabolism via the glutamine synthetase/glutamate synthase cycle. The P(II) protein inhibits the ABC-type nitrate transporter, and also nitrate reductase in some strains, by an unknown mechanism(s) when the cellular 2-OG level is low. Upon nitrogen limitation, 2-OG binds to P(II) to prevent the protein from inhibiting nitrate assimilation. A pathway-specific transcriptional regulator NtcB activates the nitrate assimilation genes in response to nitrite, either added to the medium or generated intracellularly by nitrate reduction. It plays an important role in selective activation of the nitrate assimilation pathway during growth under a limited supply of nitrate. P(II) was recently shown to regulate the activity of NtcA negatively by binding to PipX, a small coactivator protein of NtcA. On the basis of accumulating genome information from a variety of cyanobacteria and the molecular genetic data obtained from the representative strains, common features and group- or species-specific characteristics of the response of cyanobacteria to nitrogen is summarized and discussed in terms of ecophysiological significance.

  12. Direct assimilation of satellite radiance data in GRAPES variational assimilation system

    Institute of Scientific and Technical Information of China (English)

    ZHU GuoFu; XUE JiShan; ZHANG Hua; LIU ZhiQuan; ZHUANG ShiYu; HUANG LiPing; DONG PeiMing

    2008-01-01

    Variational method is capable of dealing with observations that have a complicated nonlinear relation with model variables representative of the atmospheric state, and so make it possible to directly as-similate such measured variables as satellite radiance, which have a nonlinear relation with the model variables. Assimilation of any type of observations requires a corresponding observation operator, which establishes a specific mapping from the space of the model state to the space of observation. This paper presents in detail how the direct assimilation of real satellite radiance data is implemented in the GRAPES-3DVar analysis system. It focuses on all the components of the observation operator for direct assimilation of real satellite radiance data, including a spatial interpolation operator that trans-forms variables from model grid points to observation locations, a physical transformation from model variables to observed elements with different choices of model variables, and a data quality control. Assimilation experiments, using satellite radiances such as NOAA17 AMSU-A and AMSU-B (Advanced Microwave Sounding Unit), are carried out with two different schemes. The results from these experi-ments can be physically understood and clearly reflect a rational effect of direct assimilation of satellite radiance data in GRAPES-3DVar analysis system.

  13. Characteristic strategy of assimilation of various saccharides by Clostridium cellulovorans.

    Science.gov (United States)

    Inamori, Takako; Aburaya, Shunsuke; Morisaka, Hironobu; Kuroda, Kouichi; Ueda, Mitsuyoshi

    2016-12-01

    Clostridium cellulovorans can effectively assimilate not only cellulose but also hemicellulose by producing cellulosomal and non-cellulosomal enzymes. However, little is known about how C. cellulovorans assimilates various saccharides in media containing polysaccharides and oligosaccharides. In this research, we investigated the property of saccharide incorporation and assimilation by C. cellulovorans. Faster growth in media containing xylan and cellulose was achieved by switching polysaccharides, in which xylan was first assimilated, followed by cellulose. Furthermore, the presence of polysaccharides that can be easily degraded might increase the assimilation rate of lignocellulose by promoting growth. These properties of C. cellulovorans could be suitable for the effective utilization of lignocellulosic biomass.

  14. Open-nucleus breeding strategies compared with population-wide positive assortative mating: I. Equal distribution of testing efforts.

    Science.gov (United States)

    Lstibůrek, M; Mullin, T J; Lindgren, D; Rosvall, O

    2004-10-01

    Positive assortative mating (PAM) can enhance the additive genetic variance in a breeding population(BP). This increases the potential for gains in the production population (PP, selected subset of the BP) for recurrent selection programs in forest trees. The assortment of mates can be either: (1) by individual tree rank across the whole BP (PAM), or (2) trees of similar rank can be merged into larger hierarchical groups and then mated randomly within group ("open"-nucleus breeding,NB). The objective of this study was to compare PAM and NB in quantitative terms. The NB simulation model assumed two tiers (nucleus, main) with unrestricted migration between the tiers. Clonal tests were used to predict breeding values and test resources per mate were kept constant for all mates. Both gain and diversity were combined into a single selection criterion, "group-merit selection." Alternatives were compared over five breeding cycles by considering genetic gain and diversity in a selected PP established in a seed orchard. The assortment of mates in both alternatives enhanced additive variance and increased the additive effect in the BP, leading to additional gain in the PP. Gains generated under PAM always exceeded gains under NB. Thus, the main message from this study is that PAM in both the short- and long-term results in more gain at any target level of diversity in the PP (the breeder's target) than is achieved by the NB alternative. The optimum size of the nucleus varies with the desired level of seed orchard diversity. At lower target diversity, smaller nucleus sizes are favorable, while larger sizes result in more gain when seed orchard diversity is considered more important.

  15. Healthy snacks at the checkout counter: A lab and field study on the impact of shelf arrangement and assortment structure on consumer choices

    Directory of Open Access Journals (Sweden)

    van Kleef Ellen

    2012-12-01

    Full Text Available Abstract Background The essence of nudging is to adapt the environment in which consumers make decisions to help them make better choices, without forcing certain outcomes upon them. To determine how consumers can effectively be guided to select healthier snacks, we examine the effect of manipulating the assortment structure and shelf layout of an impulse display including both healthy and unhealthy snacks near the checkout counter of a canteen. Methods Both a lab and field study applied a two-factor experimental design manipulating snack offerings both in an on-screen choice environment and a natural environment (hospital staff restaurant. Shelf arrangement (i.e. accessibility was altered by putting healthy snacks at higher shelves versus lower shelves. Assortment structure (i.e. availability was altered by offering an assortment that either included 25% or 75% healthy snacks. Participants in the lab study (n = 158 made a choice from a shelf display. A brief survey following snack selection asked participants to evaluate the assortment and their choice. The field experiment took place in a hospital canteen. Daily sales data were collected for a period of four weeks. On completion of the field study, employees (n = 92 filled out a questionnaire about all four displays and rated their attractiveness, healthiness and perceived freedom of choice. Results The lab study showed a higher probability of healthy snack choice when 75% of the assortment consisted of healthy snacks compared to conditions with 25% healthy snack assortments, even though choices were not rated less satisfying or more restrictive. Regarding shelf display location of healthy snacks, no significant differences were observed. There was also no significant shelf arrangement by assortment structure interactive effect. The field study replicated these findings, in that this assortment structure led to higher sales of healthy snacks. Sales of unhealthy and total snacks were

  16. THE ASSORTMENT STRUCTURE AND THE PRICE LEVELS AS A FACTOR OF MARKETING CHANNEL COMPETITIVENESS–EMPIRICAL EVIDENCE FROM THE REPUBLIC OF SERBIA

    Directory of Open Access Journals (Sweden)

    Jelena Končar

    2016-12-01

    Full Text Available In this paper, the authors point out the differences in the structure of the product assortment of retailers who show their offers on the Web, with the aim of proving that the structure of the assortment may be a factor of marketing channel competitiveness that the consumers recognize and that makes them opt for a certain marketing channel. On the same basis we aim to compare the prices of representative product categories, in order to determine the impact of prices on marketing channel competitiveness, without taking other factors of channel competitiveness into consideration. Based on the conducted research, we can conclude that having a number of categories of products in the assortment presents a competitive advantage for the retailer in the traditional marketing channel since retailers with electronic sales have a more diverse assortment in their retail store than online. Compared to “pure play” electronic retailers, the structure of assortment measured in number of categories of products that are on offer in e-stores is not significantly different between “pure play” and “bricks and clicks” electronic retailers. On the other hand, if we look at the price levels, there is a difference in prices of product categories on websites of “brick and click” retailers since prices in retail stores are higher than prices in the traditional retail store of the same retailer. However, offers on the website of “pure play” electronic retailers are higher compared to “brick and click” retailers.

  17. Helioseismic Data Assimilation in Solar Dynamo Models

    CERN Document Server

    Muñoz-Jaramillo, Andrés; Martens, Petrus C H

    2008-01-01

    An essential ingredient in kinematic dynamo models is the velocity field within the solar convection zone. In particular, the differential rotation is now well constrained by helioseismic observations. Helioseismology also gives us information about the depth-dependence of the meridional circulation in the near-surface layers. The typical velocity inputs used in solar dynamo models, however, continue to be an analytic fit to the observed differential rotation and a theoretically constructed meridional flow profile that matches only the peak flow speed at the surface. Here we take the first steps towards realistic helioseismic data assimilation, by presenting methodologies for constructing differential rotation and meridional circulation profiles that more closely conform to the observational constraints currently available. We also present simulations driven by the assimilated rotation and four plausible profiles for the internal meridional circulation -- all of which match the helioseismically inferred near-...

  18. Probabilistic forecasting and Bayesian data assimilation

    CERN Document Server

    Reich, Sebastian

    2015-01-01

    In this book the authors describe the principles and methods behind probabilistic forecasting and Bayesian data assimilation. Instead of focusing on particular application areas, the authors adopt a general dynamical systems approach, with a profusion of low-dimensional, discrete-time numerical examples designed to build intuition about the subject. Part I explains the mathematical framework of ensemble-based probabilistic forecasting and uncertainty quantification. Part II is devoted to Bayesian filtering algorithms, from classical data assimilation algorithms such as the Kalman filter, variational techniques, and sequential Monte Carlo methods, through to more recent developments such as the ensemble Kalman filter and ensemble transform filters. The McKean approach to sequential filtering in combination with coupling of measures serves as a unifying mathematical framework throughout Part II. Assuming only some basic familiarity with probability, this book is an ideal introduction for graduate students in ap...

  19. Monitoring groundwater drought with GRACE data assimilation

    Science.gov (United States)

    Li, B.; Rodell, M.; Beaudoing, H. K.; Getirana, A.; Zaitchik, B. F.

    2015-12-01

    Groundwater drought is a distinct class of drought, not a sub-class of meteorological, agricultural and hydrological drought and has profound impacts on natural environments and societies. Due to a deficiency of in situ measurements, we developed a groundwater drought indicator using groundwater change estimates derived by assimilating GRACE derived terrestrial water storage (TWS) anomalies into the NASA Catchment land surface model. Data assimilation enables spatial and temporal downscaling of coarse GRACE TWS observations (monthly and ~150,000 km2 effective spatial resolution) and extrapolation to near-real time. In this talk, we will present our latest progress on using GRACE satellite data for groundwater drought monitoring in the U.S. and globally. Characteristics of this groundwater drought indicator will be discussed, including its relationship with other types of drought and how they are influenced by model physics and climate conditions. Results are evaluated using in situ groundwater observations.

  20. Face-to-Face Sharing with Strangers and Altruistic Punishment of Acquaintances for Strangers: Young Adolescents Exhibit Greater Altruism than Adults

    Science.gov (United States)

    Hao, Jian; Yang, Yue; Wang, Zhiwen

    2016-01-01

    Young adolescents are generally considered to be self-absorbed. Studies indicate that they lack relevant general cognitive abilities, such as impulse control, that mature in early adulthood. However, their idealism may cause them to be more intolerant of unfair treatment to others and thus result in their engaging in more altruistic behavior. The present study aimed to clarify whether young adolescents are more altruistic than adults and thus indicate whether altruistic competence is domain-specific. One hundred 22 young adolescents and adults participated in a face-to-face, two-round, third-party punishment experiment. In each interaction group, a participant served as an allocator who could share money units with a stranger; another participant who knew the allocator could punish the acquaintance for the stranger. Participants reported their emotions after the first round, and at the end of the experiment, the participants justified their behavior in each round. The results indicated that the young adolescents both shared more and punished more than did the adults. Sharing was associated with a reference to fairness in the justifications, but altruistic punishment was associated with subsequent positive emotion. In sum, greater altruism in young adolescents compared to adults with mature cognitive abilities provides evidence of domain-specificity of altruistic competence. Moreover, sharing and altruistic punishment are related to specific cognitive and emotional mechanisms, respectively. PMID:27752246

  1. Face-to-face sharing with strangers and altruistic punishment of acquaintances for strangers: Young adolescents exhibit greater altruism than adults

    Directory of Open Access Journals (Sweden)

    Jian Hao

    2016-10-01

    Full Text Available Young adolescents are generally considered to be self-absorbed. Studies indicate that they lack relevant general cognitive abilities, such as impulse control, that mature in early adulthood. However, their idealism may cause them to be more intolerant of unfair treatment to others and thus result in their engaging in more altruistic behavior. The present study aimed to clarify whether young adolescents are more altruistic than adults and thus indicate whether altruistic competence is domain-specific. One hundred twenty-two young adolescents and adults participated in a face-to-face, two-round, third-party punishment experiment. In each interaction group, a participant served as an allocator who could share money units with a stranger; another participant who knew the allocator could punish the acquaintance for the stranger. Participants reported their emotions after the first round, and at the end of the experiment, the participants justified their behavior in each round. The results indicated that the young adolescents both shared more and punished more than did the adults. Sharing was associated with a reference to fairness in the justifications, but altruistic punishment was associated with subsequent positive emotion. In sum, greater altruism in young adolescents compared to adults with mature cognitive abilities provides evidence of domain-specificity of altruistic competence. Moreover, sharing and altruistic punishment is related to specific cognitive and emotional mechanisms respectively.

  2. Ocean Data Assimilation for Coupled Models

    Science.gov (United States)

    2016-06-07

    MODAS) developed at NRL Stennis, CODA now assimilates altimeter sea surface height ( SSH ) data, in the form of MODAS synthetic temperature and...The residual errors are time and space dependent and residual errors are at a minimum where the relationship between SSH , SST and temperature at depth...is well-defined (e.g. western boundary currents). In a CODA analysis, residual errors are combined with errors in the SST and SSH predictor fields to

  3. Variational Data Assimilation for the Global Ocean

    Science.gov (United States)

    2013-01-01

    a mixture of fore- cast and analysis error. Forecast errors result from initial condition, model, and atmospheric forcing deficiencies, while...are not lost . Second, when ensemble variances are imperfect the optimal error variance estimate is a linear combination of a climatological...Res 105:16803-16821 Martin MJ, Hines A, Bell MJ (2007) Data assimilation in the FOAM operational short-range ocean forecasting system: a

  4. Targeting iron assimilation to develop new antibacterials

    Science.gov (United States)

    Foley, Timothy L.; Simeonov, Anton

    2012-01-01

    Introduction Since the first application of antibiotics to treat bacterial infections, the development and spread of resistance has been a persistent threat. An ever-evolving pipeline of next-generation therapeutics is required for modern medicine to remain one step ahead of pathogens. Areas covered in this review This review describes recent efforts to develop drugs that interrupt the assimilation of iron by bacteria, a process that is vital to cellular homeostasis and is not currently targeted by antibiotics used in the clinic. We cover the mechanisms through which bacteria acquire iron for their environment and detail efforts to intervene in these processes with small molecule inhibitors that target key steps in these pathways, with a special emphasis on recent advances published during the 2010–2012 period. Expert Opinion For decades, the routes used by bacteria to assimilate iron from host and environmental settings have been the subject of intense study. While numerous investigations have identified inhibitors of these pathways, many have stopped short of translating the in vitro results to in vivo proof of concept experiments. Extension of preliminary findings in this manner to validate the clinical potential of iron assimilation pathways for therapeutic development will significantly increase the impact of the field. PMID:22812521

  5. A new sequential data assimilation method

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    A new sequential data assimilation method named "Monte Carlo H ∞ filter" is introduced based on H ∞ filter technique and Monte Carlo method in this paper. This method applies to nonlinear systems in condition of lacking the statistical properties of observational errors. In order to compare the as- similation capability of Monte Carlo H ∞ filter with that of the ensemble Kalman filter (EnKF) in solving practical problems caused by temporal correlation or spatial correlation of observational errors, two numerical experiments are performed by using Lorenz (1963) system and shallow-water equations re- spectively. The result is that the assimilation capability of the new method is better than that of EnKF method. It is also shown that Monte Carlo H ∞ filter assimilation method is effective and suitable to nonlinear systems in that it does not depend on the statistical properties of observational errors and has better robustness than EnKF method when the statistical properties of observational errors are varying. In addition, for the new method, the smallest level factor founded by search method is flow-dependent.

  6. Data Assimilation and Model Evaluation Experiment Datasets.

    Science.gov (United States)

    Lai, Chung-Chieng A.; Qian, Wen; Glenn, Scott M.

    1994-05-01

    The Institute for Naval Oceanography, in cooperation with Naval Research Laboratories and universities, executed the Data Assimilation and Model Evaluation Experiment (DAMÉE) for the Gulf Stream region during fiscal years 1991-1993. Enormous effort has gone into the preparation of several high-quality and consistent datasets for model initialization and verification. This paper describes the preparation process, the temporal and spatial scopes, the contents, the structure, etc., of these datasets.The goal of DAMEE and the need of data for the four phases of experiment are briefly stated. The preparation of DAMEE datasets consisted of a series of processes: 1)collection of observational data; 2) analysis and interpretation; 3) interpolation using the Optimum Thermal Interpolation System package; 4) quality control and re-analysis; and 5) data archiving and software documentation.The data products from these processes included a time series of 3D fields of temperature and salinity, 2D fields of surface dynamic height and mixed-layer depth, analysis of the Gulf Stream and rings system, and bathythermograph profiles. To date, these are the most detailed and high-quality data for mesoscale ocean modeling, data assimilation, and forecasting research. Feedback from ocean modeling groups who tested this data was incorporated into its refinement.Suggestions for DAMEE data usages include 1) ocean modeling and data assimilation studies, 2) diagnosis and theorectical studies, and 3) comparisons with locally detailed observations.

  7. FISH detection of ribosomal cistrons and assortment-distortion for X and B chromosomes in Dichroplus pratensis (Acrididae).

    Science.gov (United States)

    Bidau, C J; Rosato, M; Martí, D A

    2004-01-01

    Assortment-distortion with respect to the X and NOR activity of a rare mitotically stable B chromosome (B(N)), was examined in 16 males of Dichroplus pratensis (Acrididae: Melanoplinae) from Argentine populations. In 1B individuals, the X and B associate preferentially during prophase I reaching a maximum level of association at zygotene. Frequency of X/B association remains relatively high up to diplotene-diakinesis and decreases steeply towards metaphase I. The percent X/B association at each stage is positively influenced by association at the previous stage, and interindividual variability in X/B association decreases as the frequency of association increases. Both chromosomes tended to preferentially orientate toward the same pole at MI (mean ratio of 16 individuals, 1.50:1) which determined an excess of XB and 00 second spermatocytes over X0 and 0B ones (1.39:1). No significant differences occurred between the MI, AI and MII assortment ratios. Fluorescent in situ hybridisation (FISH) confirmed that the B chromosome carries ribosomal genes and helped to establish that, during spermiogenesis, both the B and the normal NOR-bearing chromosome (S8) are clustered near the centriole adjunct region of spermatids. However, FISH failed to reveal the existence of inactive ribosomal cistrons in the X chromosome, as previously suggested, thus providing no support to a simple origin of the B from the X.

  8. 基于HVI检验数据的配棉方法%Cotton assorting based on HVI data

    Institute of Scientific and Technical Information of China (English)

    石洋; 张得昆; 徐玫

    2011-01-01

    利用公检棉花的HVI数据对棉纺企业配棉方法进行指导,达到优棉优用、稳定质量、节约资源、降低成本的目的.通过分析公检棉花各项数据指标和棉纺企业配棉指标的关系,以公检棉花的HVI数据为基础,根据配棉原理建立配棉数学模型,把配棉数学模型转化为标准的线性方程组,利用计算机求解方程组,完成对配棉模型的求解.通过对配棉方案进行优化,使棉纺企业更加合理地利用棉花资源.%The relationship between the objective fair detection data and cotton assorting indicators is analyzed. Taking HVI data as the basis,the mathematical model of cotton assorting is set up,then it is changed to standard system of linear equations,finally,the system of linear equations is solved by computer. The optimized cotton as-soring plan provides a reasonable way for cotton bales management and processing.

  9. Satellite radiance data assimilation for rainfall prediction in Java Region

    Science.gov (United States)

    Sagita, Novvria; Hidayati, Rini; Hidayat, Rahmat; Gustari, Indra

    2017-01-01

    This study examined the influence of satellite radiance data assimilation for predicting two days of heavy rainfall in the Java region. The first case occurred from 22 to 23 on January 2015 while the second case occurred from 1 to 2 on February 2015. The analysis examined before and after data assimilation in the two cases study. The Global Forecast System (GFS) data were used as initial condition which was assimilated with several data such as surface observation data, radiance data from AMSUA sensor, radiance data from HIRS sensor, and radiance data from MHS sensor. Weather Research and Forecasting Data Assimilation (WRFDA) is a tool which is used in this study for assimilating process with Three Dimensional Variation (3D-Var) method. The Quantitative Precipitation Forecast (QPF) skill was used to evaluate influence data assimilation for rainfall prediction. The result of the study obtained different rainfall prediction with different data assimilation. In general, the surface observation data assimilation has lower QPF skill than the satellite radiance data assimilation. Even thought radiance data assimilation has slightly contribution on rainfall prediction, but it gave better accuracy on rainfall prediction for two heavy rainfall cases.

  10. Cotton Assorting Optimized Model Based on HVI Data and Its Application%基于HVI数据的配棉优选模型及应用研究

    Institute of Scientific and Technical Information of China (English)

    邱兆宝

    2012-01-01

    研究基于HVI数据的配棉方案优选模型的创建方法及应用效果.以HVI数据为基础,配棉技术标准为依据,运用系统工程的思想和方法,遵循配棉原则,利用较少的定量信息使决策的思维过程数学化,从而为多目标、多准则的配棉问题提供比较简便的决策方法.模型的求解采用隐枚举法,有效地解决了非线性目标整数规划配棉问题.认为:配棉方案优选模型与配棉方案的评价方法,可作为棉纺质量工艺专家指导系统的组成部分.%Establish method and application effect of cotton assorting optimized model based on HVI data were researched. HVI data were taken as base, technology standard of cotton assorting were selected as foundation, ideas and method of system engineering was used. Principle of cotton assorting should be followed. Decision-making process of thinking could be mathematical by using less quantitative information, so decision method of cotton assorting problems with multi-objective and multi criteria can be provided. Implicit enumeration was used for model solve,cotton assorting problems of nonlinear objective integer programming can be solved effectively. It is considered that the cotton assorting optimization model and evaluation methods could be the part of cotton spinning processing expert guide system.

  11. Assortive mating for personaltiy traits, educational level, religious affiliation, height, weight, adn body mass index in parents of Korean twin sample.

    Science.gov (United States)

    Hur, Yoon-Mi

    2003-12-01

    The degree of assortative mating for psychological and physical traits in Asian societies in relatively unknown. The present study examined assortative mating for educational level, personality traits, religious affiliation, height, weight, and body mass index in a korean sample. Age-adjusted spouse correlations were high for educational level (r = .63) and religious affiliation (r = .67), modest for most personality traits (rs = -.01 to .26), and trivial for height (r = .04), weight (r = .05)m and body mass index (r = .11). These results were remarkably similar to those found from the western samples. Implications of the present findings in behavior genetic studies and human mating patterns were briefly discussed.

  12. User acquaintance with mobile interfaces.

    Science.gov (United States)

    Ehrler, Frederic; Walesa, Magali; Sarrey, Evelyne; Wipfli, Rolf; Lovis, Christian

    2013-01-01

    Handheld technology finds slowly its place in the healthcare world. Some clinicians already use intensively dedicated mobile applications to consult clinical references. However, handheld technology hasn't still broadly embraced to the core of the healthcare business, the hospitals. The weak penetration of handheld technology in the hospitals can be partly explained by the caution of stakeholders that must be convinced about the efficiency of these tools before going forward. In a domain where temporal constraints are increasingly strong, caregivers cannot loose time on playing with gadgets. All users are not comfortable with tactile manipulations and the lack of dedicated peripheral complicates entering data for novices. Stakeholders must be convinced that caregivers will be able to master handheld devices. In this paper, we make the assumption that the proper design of an interface may influence users' performances to record information. We are also interested to find out whether users increase their efficiency when using handheld tools repeatedly. To answer these questions, we have set up a field study to compare users' performances on three different user interfaces while recording vital signs. Some user interfaces were familiar to users, and others were totally innovative. Results showed that users' familiarity with smartphone influences their performances and that users improve their performances by repeating a task.

  13. Robust data assimilation using $L_1$ and Huber norms

    OpenAIRE

    Rao, Vishwas; Sandu, Adrian; Ng, Michael; Nino-Ruiz, Elias

    2015-01-01

    Data assimilation is the process to fuse information from priors, observations of nature, and numerical models, in order to obtain best estimates of the parameters or state of a physical system of interest. Presence of large errors in some observational data, e.g., data collected from a faulty instrument, negatively affect the quality of the overall assimilation results. This work develops a systematic framework for robust data assimilation. The new algorithms continue to produce good analyse...

  14. Ionospheric data assimilation and forecasting during storms

    Science.gov (United States)

    Chartier, Alex T.; Matsuo, Tomoko; Anderson, Jeffrey L.; Collins, Nancy; Hoar, Timothy J.; Lu, Gang; Mitchell, Cathryn N.; Coster, Anthea J.; Paxton, Larry J.; Bust, Gary S.

    2016-01-01

    Ionospheric storms can have important effects on radio communications and navigation systems. Storm time ionospheric predictions have the potential to form part of effective mitigation strategies to these problems. Ionospheric storms are caused by strong forcing from the solar wind. Electron density enhancements are driven by penetration electric fields, as well as by thermosphere-ionosphere behavior including Traveling Atmospheric Disturbances and Traveling Ionospheric Disturbances and changes to the neutral composition. This study assesses the effect on 1 h predictions of specifying initial ionospheric and thermospheric conditions using total electron content (TEC) observations under a fixed set of solar and high-latitude drivers. Prediction performance is assessed against TEC observations, incoherent scatter radar, and in situ electron density observations. Corotated TEC data provide a benchmark of forecast accuracy. The primary case study is the storm of 10 September 2005, while the anomalous storm of 21 January 2005 provides a secondary comparison. The study uses an ensemble Kalman filter constructed with the Data Assimilation Research Testbed and the Thermosphere Ionosphere Electrodynamics General Circulation Model. Maps of preprocessed, verticalized GPS TEC are assimilated, while high-latitude specifications from the Assimilative Mapping of Ionospheric Electrodynamics and solar flux observations from the Solar Extreme Ultraviolet Experiment are used to drive the model. The filter adjusts ionospheric and thermospheric parameters, making use of time-evolving covariance estimates. The approach is effective in correcting model biases but does not capture all the behavior of the storms. In particular, a ridge-like enhancement over the continental USA is not predicted, indicating the importance of predicting storm time electric field behavior to the problem of ionospheric forecasting.

  15. Data Assimilation Cycling for Weather Analysis

    Science.gov (United States)

    Tran, Nam; Li, Yongzuo; Fitzpatrick, Patrick

    2008-01-01

    This software package runs the atmospheric model MM5 in data assimilation cycling mode to produce an optimized weather analysis, including the ability to insert or adjust a hurricane vortex. The program runs MM5 through a cycle of short forecasts every three hours where the vortex is adjusted to match the observed hurricane location and storm intensity. This technique adjusts the surrounding environment so that the proper steering current and environmental shear are achieved. MM5cycle uses a Cressman analysis to blend observation into model fields to get a more accurate weather analysis. Quality control of observations is also done in every cycle to remove bad data that may contaminate the analysis. This technique can assimilate and propagate data in time from intermittent and infrequent observations while maintaining the atmospheric field in a dynamically balanced state. The software consists of a C-shell script (MM5cycle.driver) and three FORTRAN programs (splitMM5files.F, comRegrid.F, and insert_vortex.F), and are contained in the pre-processor component of MM5 called "Regridder." The model is first initialized with data from a global model such as the Global Forecast System (GFS), which also provides lateral boundary conditions. These data are separated into single-time files using splitMM5.F. The hurricane vortex is then bogussed in the correct location and with the correct wind field using insert_vortex.F. The modified initial and boundary conditions are then recombined into the model fields using comRegrid.F. The model then makes a three-hour forecast. The three-hour forecast data from MM5 now become the analysis for the next short forecast run, where the vortex will again be adjusted. The process repeats itself until the desired time of analysis is achieved. This code can also assimilate observations if desired.

  16. Variational data assimilation using targetted random walks

    KAUST Repository

    Cotter, S. L.

    2011-02-15

    The variational approach to data assimilation is a widely used methodology for both online prediction and for reanalysis. In either of these scenarios, it can be important to assess uncertainties in the assimilated state. Ideally, it is desirable to have complete information concerning the Bayesian posterior distribution for unknown state given data. We show that complete computational probing of this posterior distribution is now within the reach in the offline situation. We introduce a Markov chain-Monte Carlo (MCMC) method which enables us to directly sample from the Bayesian posterior distribution on the unknown functions of interest given observations. Since we are aware that these methods are currently too computationally expensive to consider using in an online filtering scenario, we frame this in the context of offline reanalysis. Using a simple random walk-type MCMC method, we are able to characterize the posterior distribution using only evaluations of the forward model of the problem, and of the model and data mismatch. No adjoint model is required for the method we use; however, more sophisticated MCMC methods are available which exploit derivative information. For simplicity of exposition, we consider the problem of assimilating data, either Eulerian or Lagrangian, into a low Reynolds number flow in a two-dimensional periodic geometry. We will show that in many cases it is possible to recover the initial condition and model error (which we describe as unknown forcing to the model) from data, and that with increasing amounts of informative data, the uncertainty in our estimations reduces. © 2011 John Wiley & Sons, Ltd.

  17. The effect of model errors in variational assimilation

    Science.gov (United States)

    Wergen, Werner

    1992-08-01

    A linearized, one-dimensional shallow water model is used to investigate the effect of model errors in four-dimensional variational assimilation. A suitable initialization scheme for variational assimilation is proposed. Introducing deliberate phase speed errors in the model, the results from variational assimilation are compared to standard analysis/forecast cycle experiments. While the latter draws to the data and reflects the model errors only in the datavoid areas, variational assimilation with the model used as strong constraint is shown to distribute the model errors over the entire analysis domain. The implications for verification and diagnostics are discussed. Temporal weighting of the observations can reduce the errors towards the end of the assimilation period, but may deteriorate the subsequent forecasts. An extension to variational assimilation is proposed, which seeks not only to determine the initial state from the observations but also some of the tunable parameters of the model. The potentional usefulness of this approach for parameterization studies and for a separation of forecast errors into model- and analysis errors is discussed. Finally, variational assimilations with the model used as weak constraint are presented. While showing a good performance in the assimilation, forecasts can suffer severely if the extra term in the equations up to which the model is enforced are unable to compensate for the real model error. In the discussion, an overall appraisal of both assimilation methods is given.

  18. Application of altimetry data assimilation on mesoscale eddies simulation

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Mesoscale eddy plays an important role in the ocean circulation. In order to improve the simulation accuracy of the mesoscale eddies, a three-dimensional variation (3DVAR) data assimilation system called Ocean Variational Analysis System (OVALS) is coupled with a POM model to simulate the mesoscale eddies in the Northwest Pacific Ocean. In this system, the sea surface height anomaly (SSHA) data by satellite altimeters are assimilated and translated into pseudo temperature and salinity (T-S) profile data. Then, these profile data are taken as observation data to be assimilated again and produce the three-dimensional analysis T-S field. According to the characteristics of mesoscale eddy, the most appropriate assimilation parameters are set up and testified in this system. A ten years mesoscale eddies simulation and comparison experiment is made, which includes two schemes: assimilation and non-assimilation. The results of comparison between two schemes and the observation show that the simulation accuracy of the assimilation scheme is much better than that of non-assimilation, which verified that the altimetry data assimilation method can improve the simulation accuracy of the mesoscale dramatically and indicates that it is possible to use this system on the forecast of mesoscale eddies in the future.

  19. On optimization of data assimilation in the HBM -circulation model

    OpenAIRE

    VÀhÀ-Piikkiö, Olga

    2015-01-01

    The purpose of this study is to develop a method for optimizing the data assimilation system of the HIROMB-BOOS -model at the Finnish Meteorological Institute by finding an optimal time interval and an optimal grid for the data assimilation. This is needed to balance the extra time the data assimilation adds to the runtime of the model and the improved accuracy it provides. Data assimilation is the process of combining observations with a numerical model to improve the accuracy of the mod...

  20. An Ensemble Algorithm Based Component for Geomagnetic Data Assimilation

    Directory of Open Access Journals (Sweden)

    Zhibin Sun and Weijia Kuang

    2015-01-01

    Full Text Available Geomagnetic data assimilation is one of the most recent developments in geomagnetic studies. It combines geodynamo model outputs and surface geomagnetic observations to provide more accurate estimates of the core dynamic state and provide accurate geomagnetic secular variation forecasting. To facilitate geomagnetic data assimilation studies, we develop a stand-alone data assimilation component for the geomagnetic community. This component is used to calculate the forecast error covariance matrices and the gain matrix from a given geodynamo solution, which can then be used for sequential geomagnetic data assimilation. This component is very flexible and can be executed independently. It can also be easily integrated with arbitrary dynamo models.

  1. Aerodynamic Modeling with Heterogeneous Data Assimilation and Uncertainty Quantification Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Clear Science Corp. proposes to develop an aerodynamic modeling tool that assimilates data from different sources and facilitates uncertainty quantification. The...

  2. Data assimilation for air quality models

    DEFF Research Database (Denmark)

    Silver, Jeremy David

    2014-01-01

    chemical and physical dynamics. Concentrations of atmospheric trace gases such as ozone, carbon monoxide and nitrogen dioxide vary substantially in space and time, and this variation can be investigated by various methods including direct measurements, remote-sensing measurements and atmospheric chemistry......-dimensional optimal interpolation procedure (OI), an Ensemble Kalman Filter (EnKF), and a three-dimensional variational scheme (3D-var). The three assimilation procedures are described and tested. A multi-faceted approach is taken for the verification, using independent measurements from surface air...

  3. 7. national sittings on household and assimilated wastes; 7. assises nationales des dechets menagers et assimiles

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2002-07-01

    This publication brings together several press releases written at the occasion of the 7. national sittings on household and assimilated wastes (Agen (France), September 10-11, 2002), by responsibles of national organizations, associations, companies and local authorities involved in the management and processing of municipal wastes. (J.S.)

  4. First assimilations of COSMIC radio occultation data into the Electron Density Assimilative Model (EDAM

    Directory of Open Access Journals (Sweden)

    M. J. Angling

    2008-02-01

    Full Text Available Ground based measurements of slant total electron content (TEC can be assimilated into ionospheric models to produce 3-D representations of ionospheric electron density. The Electron Density Assimilative Model (EDAM has been developed for this purpose. Previous tests using EDAM and ground based data have demonstrated that the information on the vertical structure of the ionosphere is limited in this type of data. The launch of the COSMIC satellite constellation provides the opportunity to use radio occultation data which has more vertical information. EDAM assimilations have been run for three time periods representing quiet, moderate and disturbed geomagnetic conditions. For each run, three data sets have been ingested – only ground based data, only COSMIC data and both ground based and COSMIC data. The results from this preliminary study show that both ground and space based data are capable of improving the representation of the vertical structure of the ionosphere. However, the analysis is limited by the incomplete deployment of the COSMIC constellation and the use of auto-scaled ionosonde data. The first of these can be addressed by repeating this type of study once full deployment has been achieved. The latter requires the manual scaling of ionosonde data; ideally an agreed data set would be scaled and made available to the community to facilitate comparative testing of assimilative models.

  5. Quality assessment and assimilation of Megha-Tropiques SAPHIR radiances into WRF assimilation system

    Science.gov (United States)

    Singh, Randhir; Ojha, Satya P.; Kishtawal, C. M.; Pal, P. K.

    2013-07-01

    This study presents an initial assessment of the quality of radiances measured from SAPHIR (Sounder for Probing Vertical Profiles of Humidity) on board Megha-Tropiques (Indo-French joint satellite), launched by the Indian Space Research Organisation on 12 October 2011. The radiances measured from SAPHIR are compared with those simulated by the radiative transfer model (RTM) using radiosondes measurements, Atmospheric Infrared Sounder retrievals, and National Centers for Environmental Prediction (NCEP) analyzed fields over the Indian subcontinent, during January to November 2012. The radiances from SAPHIR are also compared with the similar measurements available from Microwave Humidity Sounder (MHS) on board MetOp-A and NOAA-18/19 satellites, during January to November 2012. A limited comparison is also carried out between SAPHIR measured and the RTM computed radiances using European Centre for Medium-Range Weather Forecasts analyzed fields, during May and November 2012. The comparison of SAPHIR measured radiances with RTM simulated and MHS observed radiances reveals that SAPHIR observations are of good quality. After the initial assessment of the quality of the SAPHIR radiances, these radiances have been assimilated within the Weather Research and Forecasting (WRF) three-dimensional variational data assimilation system. Analysis/forecast cycling experiments with and without SAPHIR radiances are performed over the Indian region during the entire month of May 2012. The assimilation of SAPHIR radiances shows considerable improvements (with moisture analysis error reduction up to 30%) in the tropospheric analyses and forecast of moisture, temperature, and winds when compared to NCEP analyses and radiances measurement obtained from MHS, Advanced Microwave Sounding Unit-A, and High Resolution Infrared Sounder. Assimilation of SAPHIR radiances also resulted in substantial improvement in the precipitation forecast skill when compared with satellite-derived rain. Overall

  6. Random length assortment of human and mouse T cell receptor for antigen alpha and beta chain CDR3.

    Science.gov (United States)

    Johnson, G; Wu, T T

    1999-10-01

    In view of the recently determined three-dimensional structures of complexes formed by the T cell receptor for antigen (TCR), the processed peptide and the MHC class I molecule, it is expected that the combined configuration formed by the third complementarity determining regions (CDR3) of TCR alpha and beta chains will be very restricted in size and shape due to the limited length variations of the processed peptides. Thus, the combined TCR alpha and beta chain CDR3 lengths should have a fairly narrow distribution. This feature can be due to the selective association of long alpha chain CDR3 with short beta chain CDR3 and vice versa or due to random assortment of alpha and beta chain CDR3 of even narrower length distribution. Based on existing translated amino acid sequence data, it has been found that the latter mechanism is responsible.

  7. Left or right? Sources of political orientation: the roles of genetic factors, cultural transmission, assortative mating, and personality.

    Science.gov (United States)

    Kandler, Christian; Bleidorn, Wiebke; Riemann, Rainer

    2012-03-01

    In this study, we used an extended twin family design to investigate the influences of genetic and cultural transmission as well as different sources of nonrandom mating on 2 core aspects of political orientation: acceptance of inequality and rejecting system change. In addition, we studied the sources of phenotypic links between Big Five personality traits and political beliefs using self- and other reports. Data of 1,992 individuals (224 monozygotic and 166 dizygotic twin pairs, 92 unmatched twins, 530 spouses of twins, 268 fathers, and 322 mothers) were analyzed. Genetically informative analyses showed that political attitudes are genetically but not environmentally transmitted from parents to offspring and that a substantial proportion of this genetic variance can be accounted for by genetic variance in personality traits. Beyond genetic effects and genotypic assortative mating, generation-specific environmental sources act to increase twins' and spouses' resemblance in political beliefs. The results suggest multiple sources of political orientations in a modern democracy.

  8. Parenting across Racial and Class Lines: Assortative Mating Patterns of New Parents Who Are Married, Cohabiting, Dating or No Longer Romantically Involved

    Science.gov (United States)

    Goldstein, Joshua R.; Harknett, Kristen

    2006-01-01

    We examine the assortative mating patterns of new parents who are married, cohabiting, romantically involved and no longer romantically involved. Using data from the Fragile Families and Child Wellbeing study, we find that relationship status at the time of a birth depends mainly on father's race rather than on whether mother and father's…

  9. Impact of Assimilation on Heavy Rainfall Simulations Using WRF Model: Sensitivity of Assimilation Results to Background Error Statistics

    Science.gov (United States)

    Rakesh, V.; Kantharao, B.

    2017-03-01

    Data assimilation is considered as one of the effective tools for improving forecast skill of mesoscale models. However, for optimum utilization and effective assimilation of observations, many factors need to be taken into account while designing data assimilation methodology. One of the critical components that determines the amount and propagation observation information into the analysis, is model background error statistics (BES). The objective of this study is to quantify how BES in data assimilation impacts on simulation of heavy rainfall events over a southern state in India, Karnataka. Simulations of 40 heavy rainfall events were carried out using Weather Research and Forecasting Model with and without data assimilation. The assimilation experiments were conducted using global and regional BES while the experiment with no assimilation was used as the baseline for assessing the impact of data assimilation. The simulated rainfall is verified against high-resolution rain-gage observations over Karnataka. Statistical evaluation using several accuracy and skill measures shows that data assimilation has improved the heavy rainfall simulation. Our results showed that the experiment using regional BES outperformed the one which used global BES. Critical thermo-dynamic variables conducive for heavy rainfall like convective available potential energy simulated using regional BES is more realistic compared to global BES. It is pointed out that these results have important practical implications in design of forecast platforms while decision-making during extreme weather events

  10. Assortative mating and the reversal of gender inequality in education in europe: an agent-based model.

    Directory of Open Access Journals (Sweden)

    André Grow

    Full Text Available While men have always received more education than women in the past, this gender imbalance in education has turned around in large parts of the world. In many countries, women now excel men in terms of participation and success in higher education. This implies that, for the first time in history, there are more highly educated women than men reaching the reproductive ages and looking for a partner. We develop an agent-based computational model that explicates the mechanisms that may have linked the reversal of gender inequality in education with observed changes in educational assortative mating. Our model builds on the notion that individuals search for spouses in a marriage market and evaluate potential candidates based on preferences. Based on insights from earlier research, we assume that men and women prefer partners with similar educational attainment and high earnings prospects, that women tend to prefer men who are somewhat older than themselves, and that men prefer women who are in their mid-twenties. We also incorporate the insight that the educational system structures meeting opportunities on the marriage market. We assess the explanatory power of our model with systematic computational experiments, in which we simulate marriage market dynamics in 12 European countries among individuals born between 1921 and 2012. In these experiments, we make use of realistic agent populations in terms of educational attainment and earnings prospects and validate model outcomes with data from the European Social Survey. We demonstrate that the observed changes in educational assortative mating can be explained without any change in male or female preferences. We argue that our model provides a useful computational laboratory to explore and quantify the implications of scenarios for the future.

  11. Assortative mating and the reversal of gender inequality in education in europe: an agent-based model.

    Science.gov (United States)

    Grow, André; Van Bavel, Jan

    2015-01-01

    While men have always received more education than women in the past, this gender imbalance in education has turned around in large parts of the world. In many countries, women now excel men in terms of participation and success in higher education. This implies that, for the first time in history, there are more highly educated women than men reaching the reproductive ages and looking for a partner. We develop an agent-based computational model that explicates the mechanisms that may have linked the reversal of gender inequality in education with observed changes in educational assortative mating. Our model builds on the notion that individuals search for spouses in a marriage market and evaluate potential candidates based on preferences. Based on insights from earlier research, we assume that men and women prefer partners with similar educational attainment and high earnings prospects, that women tend to prefer men who are somewhat older than themselves, and that men prefer women who are in their mid-twenties. We also incorporate the insight that the educational system structures meeting opportunities on the marriage market. We assess the explanatory power of our model with systematic computational experiments, in which we simulate marriage market dynamics in 12 European countries among individuals born between 1921 and 2012. In these experiments, we make use of realistic agent populations in terms of educational attainment and earnings prospects and validate model outcomes with data from the European Social Survey. We demonstrate that the observed changes in educational assortative mating can be explained without any change in male or female preferences. We argue that our model provides a useful computational laboratory to explore and quantify the implications of scenarios for the future.

  12. Using data assimilation for systematic model improvement

    Science.gov (United States)

    Lang, Matthew S.; van Leeuwen, Peter Jan; Browne, Phil

    2016-04-01

    In Numerical Weather Prediction parameterisations are used to simulate missing physics in the model. These can be due to a lack of scientific understanding or a lack of computing power available to address all the known physical processes. Parameterisations are sources of large uncertainty in a model as parameter values used in these parameterisations cannot be measured directly and hence are often not well known, and the parameterisations themselves are approximations of the processes present in the true atmosphere. Whilst there are many efficient and effective methods for combined state/parameter estimation in data assimilation, such as state augmentation, these are not effective at estimating the structure of parameterisations. A new method of parameterisation estimation is proposed that uses sequential data assimilation methods to estimate errors in the numerical models at each space-time point for each model equation. These errors are then fitted to predetermined functional forms of missing physics or parameterisations, that are based upon prior information. The method picks out the functional form, or that combination of functional forms, that bests fits the error structure. The prior information typically takes the form of expert knowledge. We applied the method to a one-dimensional advection model with additive model error, and it is shown that the method can accurately estimate parameterisations, with consistent error estimates. It is also demonstrated that state augmentation is not successful. The results indicate that this new method is a powerful tool in systematic model improvement.

  13. Assimilative modeling of low latitude ionosphere

    Science.gov (United States)

    Pi, Xiaoqing; Wang, Chunining; Hajj, George A.; Rosen, I. Gary; Wilson, Brian D.; Mannucci, Anthony J.

    2004-01-01

    In this paper we present an observation system simulation experiment for modeling low-latitude ionosphere using a 3-dimensional (3-D) global assimilative ionospheric model (GAIM). The experiment is conducted to test the effectiveness of GAIM with a 4-D variational approach (4DVAR) in estimation of the ExB drift and thermospheric wind in the magnetic meridional planes simultaneously for all longitude or local time sectors. The operational Global Positioning System (GPS) satellites and the ground-based global GPS receiver network of the International GPS Service are used in the experiment as the data assimilation source. 'The optimization of the ionospheric state (electron density) modeling is performed through a nonlinear least-squares minimization process that adjusts the dynamical forces to reduce the difference between the modeled and observed slant total electron content in the entire modeled region. The present experiment for multiple force estimations reinforces our previous assessment made through single driver estimations conducted for the ExB drift only.

  14. Hormonal control of sulfate uptake and assimilation.

    Science.gov (United States)

    Koprivova, Anna; Kopriva, Stanislav

    2016-08-01

    Plant hormones have a plethora of functions in control of plant development, stress response, and primary metabolism, including nutrient homeostasis. In the plant nutrition, the interplay of hormones with responses to nitrate and phosphate deficiency is well described, but relatively little is known about the interaction between phytohormones and regulation of sulfur metabolism. As for other nutrients, sulfate deficiency results in modulation of root architecture, where hormones are expected to play an important role. Accordingly, sulfate deficiency induces genes involved in metabolism of tryptophane and auxin. Also jasmonate biosynthesis is induced, pointing to the need of increase the defense capabilities of the plants when sulfur is limiting. However, hormones affect also sulfate uptake and assimilation. The pathway is coordinately induced by jasmonate and the key enzyme, adenosine 5'-phosphosulfate reductase, is additionally regulated by ethylene, abscisic acid, nitric oxid, and other phytohormones. Perhaps the most intriguing link between hormones and sulfate assimilation is the fact that the main regulator of the response to sulfate starvation, SULFATE LIMITATION1 (SLIM1) belongs to the family of ethylene related transcription factors. We will review the current knowledge of interplay between phytohormones and control of sulfur metabolism and discuss the main open questions.

  15. Assimilative Mapping of Interhemispheric Polar Ionospheric Electrodynamics

    Science.gov (United States)

    Matsuo, T.; Richmond, A. D.; Knipp, D. J.; McGranaghan, R. M.

    2015-12-01

    The Earth's main magnetic field is asymmetric between hemispheres due to its non-dipolar component, leading to various hemispherical differences in the coupling among the solar wind, magnetosphere and ionosphere. Manifestation of the asymmetric coupling through different electrodynamic parameters reported in past studies is considerably diverse. To fill the gap in our current understanding, obtained so far by analyzing individual parameters separately and comparing statistical behaviors of the parameters, we quantify the degree of instantaneous inter-hemispheric imbalance of electromagnetic energy deposition (Poynting flux), field-aligned currents, and convection electric fields though global and self-consistent analysis of electrodynamic variables at both polar regions, by means of data assimilation. Inter-hemispheric assimilative maps of different high-latitude electrodynamical parameters are obtained from simultaneous analysis of multiple types of space-based and ground-based observations made available though the AMPERE, SuperDARN, SuperMAG and DMSP programs with rigorous consideration of the uncertainty associated with each observation.

  16. Turbulent viscosity optimized by data assimilation

    Directory of Open Access Journals (Sweden)

    Y. Leredde

    Full Text Available As an alternative approach to classical turbulence modelling using a first or second order closure, the data assimilation method of optimal control is applied to estimate a time and space-dependent turbulent viscosity in a three-dimensional oceanic circulation model. The optimal control method, described for a 3-D primitive equation model, involves the minimization of a cost function that quantifies the discrepancies between the simulations and the observations. An iterative algorithm is obtained via the adjoint model resolution. In a first experiment, a k + L model is used to simulate the one-dimensional development of inertial oscillations resulting from a wind stress at the sea surface and with the presence of a halocline. These results are used as synthetic observations to be assimilated. The turbulent viscosity is then recovered without the k + L closure, even with sparse and noisy observations. The problems of controllability and of the dimensions of the control are then discussed. A second experiment consists of a two-dimensional schematic simulation. A 2-D turbulent viscosity field is estimated from data on the initial and final states of a coastal upwelling event.

    Key words. Oceanography: general (numerical modelling · Oceanography: physical (turbulence · diffusion · and mixing processes

  17. An adaptive ensemble Kalman filter for soil moisture data assimilation

    Science.gov (United States)

    In a 19-year twin experiment for the Red-Arkansas river basin we assimilate synthetic surface soil moisture retrievals into the NASA Catchment land surface model. We demonstrate how poorly specified model and observation error parameters affect the quality of the assimilation products. In particul...

  18. Assimilation as Attraction: Computing Distance, Similarity, and Locality in Phonology

    Science.gov (United States)

    Wayment, Adam

    2009-01-01

    This dissertation explores similarity effects in assimilation, proposing an Attraction Framework to analyze cases of parasitic harmony where a trigger-target pair only results in harmony if the trigger and target agree on other features. Attraction provides a natural model of these effects by relating the pressure for assimilation to the…

  19. Trace Gas Assimilation in Preparation for Future Satellite Missions

    Science.gov (United States)

    Holmes, J. A.; Lewis, S. R.; Patel, M. R.; Clancy, R. T.

    2014-07-01

    This work aims to set up a framework for assimilation of trace gas species into a Martian Global Circulation Model. Presented here is total column ozone observations combined with the LMD/UK MGCM by data assimilation to study the annual ozone cycle.

  20. Multivariate hydrological data assimilation of soil moisture and groundwater head

    Science.gov (United States)

    Zhang, Donghua; Madsen, Henrik; Ridler, Marc E.; Kidmose, Jacob; Jensen, Karsten H.; Refsgaard, Jens C.

    2016-10-01

    Observed groundwater head and soil moisture profiles are assimilated into an integrated hydrological model. The study uses the ensemble transform Kalman filter (ETKF) data assimilation method with the MIKE SHE hydrological model code. The method was firstly tested on synthetic data in a catchment of less complexity (the Karup catchment in Denmark), and later implemented using data from real observations in a larger and more complex catchment (the Ahlergaarde catchment in Denmark). In the Karup model, several experiments were designed with respect to different observation types, ensemble sizes and localization schemes, to investigate the assimilation performance. The results showed the necessity of using localization, especially when assimilating both groundwater head and soil moisture. The proposed scheme with both distance localization and variable localization was shown to be more robust and provide better results. Using the same assimilation scheme in the Ahlergaarde model, groundwater head and soil moisture were successfully assimilated into the model. The hydrological model with assimilation showed an overall improved performance compared to the model without assimilation.

  1. Perceptual assimilation and discrimination of non-native vowel contrasts.

    Science.gov (United States)

    Tyler, Michael D; Best, Catherine T; Faber, Alice; Levitt, Andrea G

    2014-01-01

    Research on language-specific tuning in speech perception has focused mainly on consonants, while that on non-native vowel perception has failed to address whether the same principles apply. Therefore, non-native vowel perception was investigated here in light of relevant theoretical models: the Perceptual Assimilation Model (PAM) and the Natural Referent Vowel (NRV) framework. American-English speakers completed discrimination and native language assimilation (categorization and goodness rating) tests on six nonnative vowel contrasts. Discrimination was consistent with PAM assimilation types, but asymmetries predicted by NRV were only observed for single-category assimilations, suggesting that perceptual assimilation might modulate the effects of vowel peripherality on non-native vowel perception.

  2. Perceptual assimilation and discrimination of non-native vowel contrasts

    Science.gov (United States)

    Tyler, Michael D.; Best, Catherine T.; Faber, Alice; Levitt, Andrea G.

    2014-01-01

    Research on language-specific tuning in speech perception has focused mainly on consonants, while that on non-native vowel perception has failed to address whether the same principles apply. Therefore, non-native vowel perception was investigated here in light of relevant theoretical models: The Perceptual Assimilation Model (PAM) and the Natural Referent Vowel (NRV) framework. American-English speakers completed discrimination and L1-assimilation (categorization and goodness rating) tests on six non-native vowel contrasts. Discrimination was consistent with PAM assimilation types, but asymmetries predicted by NRV were only observed for single-category assimilations, suggesting that perceptual assimilation might modulate the effects of vowel peripherality on non-native vowel perception. PMID:24923313

  3. SST data assimilation experiments using an adaptive variational method

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    An adaptive variational data assimilation method is proposed by Zhu and Kamachi[1]. This method can adaptively adjust the model state without knowing explicitly the model error covariance matrix. The method enables very flexible ways to form some reduced order problems. A proper reduced order problem not only reduces computational burden but also leads to corrections that are more consistent with the model dynamics that trends to produce better forecast. These features make the adaptive variational method a good candidate for SST data assimilation because the model error of an ocean model is usually difficult to estimate. We applied this method to an SST data assimilation problem using the LOTUS data sets and an ocean mixed layer model (Mellor-Yamada level 2.5). Results of assimilation experiments showed good skill of improvement subsurface temperatures by assimilating surface observation alone.

  4. A variational formulation for translation and assimilation of coherent structures

    Directory of Open Access Journals (Sweden)

    M. Plu

    2013-10-01

    Full Text Available The assimilation of observations from teledetected images in geophysical models requires one to develop algorithms that would account for the existence of coherent structures. In the context of variational data assimilation, a method is proposed to allow the background to be translated so as to fit structure positions deduced from images. Translation occurs as a first step before assimilating all the observations using a classical assimilation procedure with specific covariances for the translated background. A simple validation is proposed using a dynamical system based on the one-dimensional complex Ginzburg–Landau equation in a regime prone to phase and amplitude errors. Assimilation of observations after background translation leads to better scores and a better representation of extremas than the method without translation.

  5. Chemical Data Assimilation &Optimized Earth Observation

    Science.gov (United States)

    Lary, D.

    2003-04-01

    Issues such as ozone depletion, acid rain, and photochemical smog are all of considerable environmental importance. These issues are studied using the dual approach of observations and numerical modelling. In making balanced assessments of these issues it is vital to make the best use of all the information available to us, both theoretical and observational. This is a non-trivial task. The technique of "data assimilation" is a powerful tool which allows us to address this issue. It is revolutionising the way we can study atmospheric chemistry. Data assimilation allows us to simultaneously make good use of however many observations are available to us, our theoretical understanding, and any apriori information we have, within a mathematical framework. It even allows us to infer information about chemical constituents which are not observed. It is a technique which is set to grow in importance. It is also applicable to any system for which we have both observations, a deterministic model, and estimates of uncertainty. Such applications could be from laboratory kinetics to metabolic pathways. Looking ahead we can envision Data assimilation as part of a Optimized Earth Observation System by developing a dynamic data retrieval control system. The dynamic data retrieval control system will dynamically adapt the what, where, and when for the observations made in an online fashion to maximize information content, minimize uncertainty in characterizing the system’s state vector, and minimize both the required storage and data processing time for a given observation capability (with the possibility of even directing unmanned sub-orbital platforms, drones, to make additional observations). This is particularly desirable to facilitate the dynamic tracking of evolving sharp gradients, for example, those in chemical tracer fields often located at the polar vortex edge, the tropopause and the day-night division. The basic idea is the desire for symbiotic communication to

  6. Ensemble data assimilation in the Whole Atmosphere Community Climate Model

    Science.gov (United States)

    Pedatella, N. M.; Raeder, K.; Anderson, J. L.; Liu, H.-L.

    2014-08-01

    We present results pertaining to the assimilation of real lower, middle, and upper atmosphere observations in the Whole Atmosphere Community Climate Model (WACCM) using the Data Assimilation Research Testbed (DART) ensemble adjustment Kalman filter. The ability to assimilate lower atmosphere observations of aircraft and radiosonde temperature and winds, satellite drift winds, and Constellation Observing System for Meteorology, Ionosphere, and Climate refractivity along with middle/upper atmosphere temperature observations from SABER and Aura MLS is demonstrated. The WACCM+DART data assimilation system is shown to be able to reproduce the salient features, and variability, of the troposphere present in the National Centers for Environmental Prediction/National Center for Atmospheric Research Re-Analysis. In the mesosphere, the fit of WACCM+DART to observations is found to be slightly worse when only lower atmosphere observations are assimilated compared to a control experiment that is reflective of the model climatological variability. This differs from previous results which found that assimilation of lower atmosphere observations improves the fit to mesospheric observations. This discrepancy is attributed to the fact that due to the gravity wave drag parameterizations, the model climatology differs significantly from the observations in the mesosphere, and this is not corrected by the assimilation of lower atmosphere observations. The fit of WACCM+DART to mesospheric observations is, however, significantly improved compared to the control experiment when middle/upper atmosphere observations are assimilated. We find that assimilating SABER observations reduces the root-mean-square error and bias of WACCM+DART relative to the independent Aura MLS observations by ˜50%, demonstrating that assimilation of middle/upper atmosphere observations is essential for accurate specification of the mesosphere and lower thermosphere region in WACCM+DART. Last, we demonstrate that

  7. DART: New Research Using Ensemble Data Assimilation in Geophysical Models

    Science.gov (United States)

    Anderson, Jeffrey; Raeder, Kevin; Hoar, Tim; Collins, Nancy; Romine, Glen; Barre, Jerome; Gaubert, Benjamin; Arellano, Ave; Wuerth, Stephanie

    2016-04-01

    The Data Assimilation Research Testbed (DART) is a community facility for ensemble data assimilation developed and supported by the National Center for Atmospheric Research. DART provides a comprehensive suite of software, documentation, examples and tutorials that can be used for ensemble data assimilation research, operations, and education. Scientists and software engineers from the Data Assimilation Research Section at NCAR are available to actively support DART users who want to use existing DART products or develop their own new applications. Current DART users range from university professors teaching data assimilation, to individual graduate students working with simple models, through national laboratories doing operational prediction with large state-of-the-art models. DART runs efficiently on many computational platforms ranging from laptops through thousands of cores on the newest supercomputers. This poster focuses on several recent research activities using DART with geophysical models: 1). Using CAM/DART to understand whether OCO-2 Total Precipitable Water observations can be useful in numerical weather prediction. 2). Impacts of the synergistic use of Infra-red CO retrievals (MOPITT, IASI) in CAMCHEM/DART assimilations. 3). Assimilation and Analysis of Observations of Amazonian Biomass Burning Emissions by MOPITT (aerosol optical depth), MODIS (carbon monoxide) and MISR (plume height). 4). Long term evaluation of the chemical response of MOPITT-CO assimilation in CAM-CHEM/DART OSSEs for satellite planning and emission inversion capabilities. 5). Improved forward observation operators for land models that have multiple land use/land cover segments in a single grid cell, enabling studies of the inherent variability in a single gridcell. Future enhancements are also discussed: 1). The CICE component of the Community Earth System Model will be added to the existing suite of components, which can be used for data assimilation. 2). Fully coupled

  8. Incremental 4D-VAR assimilation scheme based on Lorenz model

    Institute of Scientific and Technical Information of China (English)

    WANG Xidong; XU Dongfeng; XU Xiaohua

    2008-01-01

    Four-dimensional variational(4D-VAR) data assimilation method is a perfect data assimilation solution in theory, but the compu- tational issue is quite difficult in operational implementation. The incremental 4D-VAR assimilation scheme is set up in order to re- duce the computational cost. It is shown that the accuracy of the observations, the length of the assimilation window and the choice of the first guess have an important influence on the assimilation outcome through the contrast experiment. Compared with the standard 4D-VAR assimilation scheme, the incremental 4D-VAR assimilation scheme shows its advantage in the computation speed through an assimilation experiment.

  9. Effects of sample density on the assimilation performance of an explicit four-dimensional variational data assimilation method

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    The concepts of sample sphere radius and sample density are proposed in this paper to help illustrate that different vector transformations result in diverse sample density with the same sample ensemble, which finally affects their assimilation performance. Several numerical experiments using a onedimensional (1-D) soil water equation and synthetic observations are conducted to evaluate this new theory in land data assimilation.

  10. Continuous Data Assimilation Using General Interpolant Observables

    CERN Document Server

    Azouani, Abderrahim; Titi, Edriss S

    2013-01-01

    We present a new continuous data assimilation algorithm based on ideas that have been developed for designing finite-dimensional feedback controls for dissipative dynamical systems, in particular, in the context of the incompressible two-dimensional Navier--Stokes equations. These ideas are motivated by the fact that dissipative dynamical systems possess finite numbers of determining parameters (degrees of freedom) such as modes, nodes and local spatial averages which govern their long-term behavior. Therefore, our algorithm allows the use of any type of measurement data for which a general type of approximation interpolation operator exists. Our main result provides conditions, on the finite-dimensional spatial resolution of the collected data, sufficient to guarantee that the approximating solution, obtained by our algorithm from the measurement data, converges to the unknown reference solution over time. Our algorithm is also applicable in the context of signal synchronization in which one can recover, asy...

  11. Tracer studies of nitrogen assimilation in yeast.

    Science.gov (United States)

    ABRAMS, R; HAMMARSTEN, E

    1949-01-01

    By using N(15) as a tracer the assimilation of ammonia by the yeast, Torulopsis utilis, has been studied. It has been shown that: 1. There was no measurable incorporation of N in the protein or polynucleotide purine of carbon-starved yeast. 2. When ammonia is added to nitrogen-starved yeast there is a long lag period before division begins during which the yeast rapidly synthesizes protein, this process being accompanied by a turnover of polynucleotide purine. There was no significant dilution of the N(15)H(4) (+) of the medium by ordinary NH(4) (+). 3. When yeast containing N(15) is allowed to divide and grow in ordinary ammonia, the total amount of N(15) in the yeast remains constant. The dicarboxylic amino acids are most diluted, while arginine and nucleic acid guanine are not diluted at all.

  12. Recent immigration and studies of ethnic assimilation.

    Science.gov (United States)

    Taeuber, A F; Taeuber, K E

    1967-06-01

    Studies of ethnic assimilation are frequently based upon status comparisons between the foreign born and their "children," the second generation. The assumption that recent immigration has been negligible and that the foreign born represent a closed population is implicit in that procedure. However, analysis of official statistics indicates that immigrants who arrived since World War II now comprise a substantial share of the foreign-born population, while the foreign born who arrived before quota restrictions are rapidly being depleted by mortality. Recent immigrants, as intended by quota legislation, are of much higher socioeconomic status than immigrants who arrived before World War 1. Hence, characteristics of both recent immigrants and earlier arrivals are confounded in data for the foreign-born population. Existing data do not permit rigorous assessment of this confusion or adequate control for it. This paper suggests that tabulations of the foreign born by "year of arrival" would improve the sociological utility of data for ethnic groups.

  13. Sensitivity of simulated terrestrial carbon assimilation and canopy transpiration to different stomatal conductance and carbon assimilation schemes

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Haishan [Nanjing University of Information Science and Technology, Key Laboratory of Meteorological Disaster of Ministry of Education, Nanjing (China); Georgia Institute of Technology, School of Earth and Atmospheric Sciences, Atlanta, GA (United States); Dickinson, Robert E. [Georgia Institute of Technology, School of Earth and Atmospheric Sciences, Atlanta, GA (United States); The University of Texas at Austin, Department of Geological Sciences, Austin, TX (United States); Dai, Yongjiu [Beijing Normal University, State Key Laboratory of Earth Surface Processes and Resource Ecology, School of Global Change and Earth System Science, Beijing (China); Zhou, Liming [Georgia Institute of Technology, School of Earth and Atmospheric Sciences, Atlanta, GA (United States)

    2011-03-15

    Accurate simulations of terrestrial carbon assimilation and canopy transpiration are needed for both climate modeling and vegetation dynamics. Coupled stomatal conductance and carbon assimilation (A - g{sub s}) models have been widely used as part of land surface parameterizations in climate models to describe the biogeophysical and biogeochemical roles of terrestrial vegetation. Differences in various A - g{sub s} schemes produce substantial differences in the estimation of carbon assimilation and canopy transpiration, as well as in other land-atmosphere fluxes. The terrestrial carbon assimilation and canopy transpiration simulated by two different representative A - g{sub s} schemes, a simple A-g{sub s} scheme adopted from the treatments of the NCAR model (Scheme I) and a two-big-leaf A - g{sub s} scheme newly developed by Dai et al. (J Clim 17:2281-2299, 2004) (Scheme II), are compared via some sensitivity experiments to investigate impacts of different A - g{sub s} schemes on the simulations. Major differences are found in the estimate of canopy carbon assimilation rate, canopy conductance and canopy transpiration between the two schemes, primarily due to differences in (a) functional forms used to estimate parameters for carbon assimilation sub-models, (b) co-limitation methods used to estimate carbon assimilation rate from the three limiting rates, and (c) leaf-to-canopy scaling schemes. On the whole, the differences in the scaling approach are the largest contributor to the simulation discrepancies, but the different methods of co-limitation of assimilation rate also impact the results. Except for a few biomes, the residual effects caused by the different parameter estimations in assimilation sub-models are relatively small. It is also noted that the two-leaf temperature scheme produces distinctly different sunlit and shaded leaf temperatures but has negligible impacts on the simulation of the carbon assimilation. (orig.)

  14. 基于灰色局势决策的备件品种级别配置%Application of Grey Situation Decision Approach to Determining the Assortment of Spares and Level of Repair

    Institute of Scientific and Technical Information of China (English)

    李云锋; 王瑞林; 贾云非; 长建宇

    2011-01-01

    Analyzes the significant factors which have influence on spares assortment. This paper introduce a new method of quantizing spares assortment that is grey situation decision approach. It accounts for spares assortment basis on level of repair.%分析了影响备件品种确定的主要因素,引入灰色局势决策法,解决了按维修级别进行备件品种确定的问题,提供一种新的备件品种量化方法.

  15. Application Effect Analyses of Computer Cotton Assorting System%计算机配棉系统的应用效果分析

    Institute of Scientific and Technical Information of China (English)

    丁忠平; 袁安民

    2011-01-01

    Cotton assorting and prediction yarn quality effect by computer cotton assorting system was analyzed. Functions of computer cotton assorting system were introduced. Micronaire value and fiber length were selected as the first case,micronaire value,fiber length and fiber uniform were selected as the second case,cotton assorting and spinning test were done in the two cases. The result shows that the error between prediction data of the first case and practical data are larger. While the error between prediction data of the second case and practical data are less, the yam quality can fit use demands. It is considered that better yarn quality prediction result can be got when cotton bales classification of computer cotton assorting system can be set rationally according to raw material. Prediction result of computer cotton assorting system can be more accurate when equipment, processing etc are considered comprehensively.%分析计算机配棉系统配棉及预测成纱质量的效果.介绍了计算机配棉系统的功能,分别选取马克隆值和长度(方案1)及马克隆值、长度和纤维整齐度(方案2)为参数进行配棉及纺纱试验.试验结果表明:方案1的预测理论数据与实际生产数据误差较大,而方案2的误差明显减小,生产出的成纱质量符合使用要求.认为:根据原料情况合理设置计算机配棉系统的棉包分类分组方能取得理想的成纱质量预测结果,如能综合考虑设备、工艺等因素,计算机配棉系统的预测结果会更加精确.

  16. Assimilation efficiency of PBDE congeners in Chinook salmon.

    Science.gov (United States)

    Dietrich, Joseph P; Strickland, Stacy A; Hutchinson, Greg P; Van Gaest, Ahna L; Krupkin, Alex B; Ylitalo, Gina M; Arkoosh, Mary R

    2015-03-17

    Polybrominated diphenyl ether (PBDE) flame retardants are environmental contaminants that can accumulate in biota. PBDE accumulation in an organism depends on exposure, assimilation efficiency, and elimination/metabolism. Net assimilation efficiency represents the fraction of the contaminant that is retained in the organism after exposure. In the present study, congener-specific estimates of net PBDE assimilation efficiencies were calculated from dietary exposures of juvenile Chinook salmon. The fish were exposed to one to eight PBDE congeners up to 1500 ng total PBDEs/g food. Mean assimilation efficiencies varied from 0.32 to 0.50 for BDE congeners 28, 47, 99, 100, 153, and 154. The assimilation efficiency of BDE49 was significantly greater than 100%, suggesting biotransformation from higher brominated congeners. Whole body concentrations of BDE49 significantly increased with both exposure to increasing concentrations of BDE99 and decreasing fish lipid levels, implying lipid-influenced debromination of BDE99 to BDE49. Excluding BDE49, PBDE assimilation efficiency was not significantly related to the numbers of congeners in the diets, or congener hydrophobicity, but was greater in foods with higher lipid levels. Estimates of PBDE assimilation efficiency can be used in bioaccumulation models to assess threats from PBDE exposure to Chinook salmon health and recovery efforts, as well as to their predators.

  17. Data assimilation of Argo profiles in a northwestern Pacific model

    Science.gov (United States)

    Wang, Zhaoyi; Storto, Andrea; Pinardi, Nadia; Liu, Guimei; Wang, Hui

    2017-01-01

    Based on a novel estimation of background-error covariances for assimilating Argo profiles, an oceanographic three-dimensional variational (3DVAR) data assimilation scheme was developed for the northwestern Pacific Ocean model (NwPM) for potential use in operational predictions and maritime safety applications. Temperature and salinity data extracted from Argo profiles from January to December 2010 were assimilated into the NwPM. The results show that the average daily temperature (salinity) root mean square error (RMSE) decreased from 0.99 °C (0.10 psu) to 0.62 °C (0.07 psu) in assimilation experiments throughout the northwestern Pacific, which represents a 37.2 % (27.6 %) reduction in the error. The temperature (salinity) RMSE decreased by ˜ 0.60 °C ( ˜ 0.05 psu) for the upper 900 m (1000 m). Sea level, temperature and salinity were in better agreement with in situ and satellite datasets after data assimilation than before. In addition, a 1-month experiment with daily analysis cycles and 5-day forecasts explored the performance of the system in an operational configuration. The results highlighted the positive impact of the 3DVAR initialization at all forecast ranges compared to the non-assimilative experiment. Therefore, the 3DVAR scheme proposed here, coupled to ROMS, shows a good predictive performance and can be used as an assimilation scheme for operational forecasting.

  18. Multivariate data assimilation in an integrated hydrological modelling system

    Science.gov (United States)

    Madsen, Henrik; Zhang, Donghua; Ridler, Marc; Refsgaard, Jens Christian; Høgh Jensen, Karsten

    2016-04-01

    The immensely increasing availability of in-situ and remotely sensed hydrological data has offered new opportunities for monitoring and forecasting water resources by combining observation data with hydrological modelling. Efficient multivariate data assimilation in integrated groundwater - surface water hydrological modelling systems are required to fully utilize and optimally combine the different types of observation data. A particular challenge is the assimilation of observation data of different hydrological variables from different monitoring instruments, representing a wide range of spatial and temporal scales and different levels of uncertainty. A multivariate data assimilation framework has been implemented in the MIKE SHE integrated hydrological modelling system by linking the MIKE SHE code with a generic data assimilation library. The data assimilation library supports different state-of-the-art ensemble-based Kalman filter methods, and includes procedures for localisation, joint state, parameter and model error estimation, and bias-aware filtering. Furthermore, it supports use of different stochastic error models to describe model and measurement errors. Results are presented that demonstrate the use of the data assimilation framework for assimilation of different data types in a catchment-scale MIKE SHE model.

  19. Recent Developments in Helioseismic Analysis Methods and Solar Data Assimilation

    CERN Document Server

    Schad, Ariane; Duvall, Tom L; Roth, Markus; Vorontsov, Sergei V

    2016-01-01

    We review recent advances and results in enhancing and developing helioseismic analysis methods and in solar data assimilation. In the first part of this paper we will focus on selected developments in time-distance and global helioseismology. In the second part, we review the application of data assimilation methods on solar data. Relating solar surface observations as well as helioseismic proxies with solar dynamo models by means of the techniques from data assimilation is a promising new approach to explore and to predict the magnetic activity cycle of the Sun.

  20. Evidence indicating independent assortment of framework and complementarity-determining segments of the variable regions of rabbit light chains. Delineation of a possible J minigene.

    Science.gov (United States)

    Kabat, E A; Wu, T T; Bilofsky, H

    1980-07-01

    Amino acid sequences of rabbit light chains show considerable evidence of independent assortment of framework (FR) and complementarity-determining (CDR) segments. This suggests that they are coded for by independent genetic units (minigaenes) and that individual light chains are assembled somatically by recombining these units. Identical FR sets with multiple members generally comprise chains with different specificities, whereas identical CDR sets tend to have chains of a single specificity. A J segment, which, by analogy with mouse light chains, is made up of the last two residues of CDR3 plus all of FR4, contained 18 different sets and could contribute to diversity generated by CDR3. The longest segment, FR3, had a very large number of sets. Evidence is presented showing that the number of sets could be substantially reduced by permitting FR3 to be formed by two independently assorting segments comprising residues 57-68 and 69-88.

  1. Assimilation of MODIS Snow Cover Through the Data Assimilation Research Testbed and the Community Land Model Version 4

    Science.gov (United States)

    Zhang, Yong-Fei; Hoar, Tim J.; Yang, Zong-Liang; Anderson, Jeffrey L.; Toure, Ally M.; Rodell, Matthew

    2014-01-01

    To improve snowpack estimates in Community Land Model version 4 (CLM4), the Moderate Resolution Imaging Spectroradiometer (MODIS) snow cover fraction (SCF) was assimilated into the Community Land Model version 4 (CLM4) via the Data Assimilation Research Testbed (DART). The interface between CLM4 and DART is a flexible, extensible approach to land surface data assimilation. This data assimilation system has a large ensemble (80-member) atmospheric forcing that facilitates ensemble-based land data assimilation. We use 40 randomly chosen forcing members to drive 40 CLM members as a compromise between computational cost and the data assimilation performance. The localization distance, a parameter in DART, was tuned to optimize the data assimilation performance at the global scale. Snow water equivalent (SWE) and snow depth are adjusted via the ensemble adjustment Kalman filter, particularly in regions with large SCF variability. The root-mean-square error of the forecast SCF against MODIS SCF is largely reduced. In DJF (December-January-February), the discrepancy between MODIS and CLM4 is broadly ameliorated in the lower-middle latitudes (2345N). Only minimal modifications are made in the higher-middle (4566N) and high latitudes, part of which is due to the agreement between model and observation when snow cover is nearly 100. In some regions it also reveals that CLM4-modeled snow cover lacks heterogeneous features compared to MODIS. In MAM (March-April-May), adjustments to snowmove poleward mainly due to the northward movement of the snowline (i.e., where largest SCF uncertainty is and SCF assimilation has the greatest impact). The effectiveness of data assimilation also varies with vegetation types, with mixed performance over forest regions and consistently good performance over grass, which can partly be explained by the linearity of the relationship between SCF and SWE in the model ensembles. The updated snow depth was compared to the Canadian Meteorological

  2. Dissortative From the Outside, Assortative From the Inside: Social Structure and Behavior in the Industrial Trade Network

    CERN Document Server

    Kelman, Guy; Manes, Eran; Lamieri, Marco; Golo, Natasa; Solomon, Sorin

    2014-01-01

    It is generally accepted that neighboring nodes in financial networks are negatively assorted with respect to the correlation between their degrees. This feature would play an important 'damping' role in the market during downturns (periods of distress) since this connectivity pattern between firms lowers the chances of auto-amplifying (the propagation of) distress. In this paper we explore a trade-network of industrial firms where the nodes are suppliers or buyers, and the links are those invoices that the suppliers send out to their buyers and then go on to present to their bank for discounting. The network was collected by a large Italian bank in 2007, from their intermediation of the sales on credit made by their clients. The network also shows dissortative behavior as seen in other studies on financial networks. However, when looking at the credit rating of the firms, an important attribute internal to each node, we find that firms that trade with one another share overwhelming similarity. We know that m...

  3. I. V. Michurin’S Work on Expansion of the Plant Horticulture Assortment and Improvement of Food Quality

    Directory of Open Access Journals (Sweden)

    Sokolov Viktor V.

    2015-09-01

    Full Text Available October 2015 marks the 160th anniversary of the birth of Ivan V. Michurin. As a scientist and plant breeder, he made a significant improvement of many fruit and berry plants, and flowers. He developed methods of plant breeding, especially regarding long-distance hybridisation of fruit plants, and promoted gardening to the north and east of Russia. He introduced some new berry species, such as Actinidia and black chokeberry, and was the first in Russia to use dwarf and semi dwarf stocks of apples. Michurin initiated the mass movement of gardeners and horticulture experimenters in USSR who changed and significantly extended the assortment and areas of fruit and berries cultivation in the country. He not only brought together a representative collection of species and varieties of fruit, berry and flower plants from around the world, but also used them in breeding by hybridization, including interspecific. He created some new artificial interspecific hybrids such as Cerapadus (cherry and bird cherry tree hybrid, and others. Michurin created 132 cultivars. Eleven of them are not only cultivated, but are also included in “The State Register of Protected Plant Breeding of the Russian Federation”.

  4. Possible assortment of a1 and a2 region gene segments in human MHC class I molecules.

    Science.gov (United States)

    Johnson, G; Wu, T T

    1998-06-01

    Using pair-wise comparison of aligned nucleotide sequences of distinct and complete human MHC class I molecules, we have constructed triangular tables to study the similarities and differences of various a1 (exon 2) and a2 (exon 3) region sequences. There are two HLA-A (A*6901 and A*6601) and 13 HLA-B (B*4201, B*8101, B*4102, B*4801, B*4007, B*4001, B*4802, Dw53, B*4406, B*4402, B*3901, B*1514 and B*3702) sequences that have identical a1 sequences with other known MHC class I molecules, while their a2 sequences are the same as those of different ones. Of these 15, A*6901, B*4001 and B*4802 have previously been suggested as the results of recombination between A*6801 and A*0201, B*4101 and B*8101, and B*4801 and B*3501, respectively. However, many other sequences can also be used to generate them by recombination. Furthermore, their reciprocal products have never been identified. Thus, gene conversion has subsequently been suggested as an alternative. Another possible genetic mechanism for generating these nucleotide sequence similarities can be assortment, or that some gene segments can be duplicated or multiplicated to be used in different human MHC class I molecules. Interestingly, this genetic mechanism is probably absent for the generation of different mouse MHC class I molecules.

  5. HLA and epidermolysis bullosa: evidence for independent assortment of Weber-Cockayne subtype of epidermolysis bullosa and HLA complex.

    Science.gov (United States)

    Vaidya, S; Tyring, S K; Feldkamp, M; Johnson, L B; Fine, J D

    1991-05-01

    The purpose of this study was to examine the genetic linkage (but not the association) between HLA complex and Weber-Cockayne Subtype of epidermolysis bullosa (EBS-WC). We HLA typed 44 members of three multi-generation families in which 24 members have the clinical evidence of EBS-WC. The patterns of inheritance of various HLA haplotypes and the disease were mathematically analyzed to estimate frequency of recombination (i.e. genetic distance) between HLA complex and the disease by calculating Lod Scores for each family separately as well as all for three families combined. Our results show that only one family had a positive Lod Score. The Lod Scores for the remaining two families as well as the combined Lod Score for all three families were negative. These data suggest that odds are against the genetic linkage between HLA complex and Weber-Cockayne Subtype of epidermolysis bullosa and in favor of independent assortment of the disease and HLA complex.

  6. The Analysis Of The Strain Influence On Some Yield Elemnts On An Assortment Of Isogenic Wheat Varieties

    Science.gov (United States)

    Păniţă, Ovidiu

    2015-09-01

    In the years 2012-2014 on Banu-Maracine DRS were tested an assortment consists of 25 isogenic lines of common wheat (Triticum aestivum ssp.vulgare), with the combination of Rht1&rht8 genes, the analyzed characters being the hight of the strain (cm), the number of seeds/spike, seeds weight/spike (g), no. of spikes/m2, weight of a thousand seeds (WTS) (g) and no. of emerged plants/m2. Based on recorded data and statistical processing of those, they were identified a numbers of links between these characters, links quantified by using the correlation. Regarding the classification based on the average high of the strain, it was found that that there is a strong link between some characters too. Based on component analysis, the no. of seeds/spike and the seeds weight/spikes are components that influence in excess of 83% variance analysis, a total of five genotypes having positive scores for both factors.

  7. Genetic and environmental factors associated with laboratory rearing affect survival and assortative mating but not overall mating success in Anopheles gambiae sensu stricto.

    Science.gov (United States)

    Paton, Doug; Touré, Mahamoudou; Sacko, Adama; Coulibaly, Mamadou B; Traoré, Sékou F; Tripet, Frédéric

    2013-01-01

    Anopheles gambiae sensu stricto, the main vector of malaria in Africa, is characterized by its vast geographical range and complex population structure. Assortative mating amongst the reproductively isolated cryptic forms that co-occur in many areas poses unique challenges for programs aiming to decrease malaria incidence via the release of sterile or genetically-modified mosquitoes. Importantly, whether laboratory-rearing affects the ability of An. gambiae individuals of a given cryptic taxa to successfully mate with individuals of their own form in field conditions is still unknown and yet crucial for mosquito-releases. Here, the independent effects of genetic and environmental factors associated with laboratory rearing on male and female survival, mating success and assortative mating were evaluated in the Mopti form of An. gambiae over 2010 and 2011. In semi-field enclosures experiments and despite strong variation between years, the overall survival and mating success of male and female progeny from a laboratory strain was not found to be significantly lower than those of the progeny of field females from the same population. Adult progeny from field-caught females reared at the larval stage in the laboratory and from laboratory females reared outdoors exhibited a significant decrease in survival but not in mating success. Importantly, laboratory individuals reared as larvae indoors were unable to mate assortatively as adults, whilst field progeny reared either outdoors or in the laboratory, as well as laboratory progeny reared outdoors all mated significantly assortatively. These results highlight the importance of genetic and environment interactions for the development of An. gambiae's full mating behavioral repertoire and the challenges this creates for mosquito rearing and release-based control strategies.

  8. Narcissism Guides Mate Selection: Humans Mate Assortatively, as Revealed by Facial Resemblance, following an Algorithm of “Self Seeking Like”

    Directory of Open Access Journals (Sweden)

    Liliana Alvarez

    2004-01-01

    Full Text Available Theoretical studies suggest that mating and pair formation is not likely to be random. Computer simulations suggested that sex among genetically complex organisms requires mate choice strategies for its evolutionary maintenance, to reduce excessive genetic variance produced by out-crossing. One strategy achieving this aim efficiently in computer simulations is assortative mating modeled as “self seeking like”. Another one is selection of “good genes”. Assortative mating increases the probability of finding a genetically similar mate, without fomenting inbreeding, achieving assortative mating without hindering the working of other mate selection strategies which aim to maximize the search for “good genes”, optimizing the working of sex in evolutionary terms. Here we present indirect evidence that in a significant proportion of human reproductive couples, the partners show much higher facial resemblances than can be expected by random pair formation, or as the outcome of “matching for attractiveness” or the outcome of competition for the most attractive partner accessible, as had been previously assumed. The data presented is compatible with the hypothesis derived from computer simulations, that human mate selection strategies achieve various aims: “self seeking like” (including matching for attractiveness and mating with the best available genes.

  9. Regional Ocean Modeling System (ROMS): Samoa: Data Assimilating

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Regional Ocean Modeling System (ROMS) 3-day, 3-hourly data assimilating hindcast for the region surrounding the islands of Samoa at approximately 3-km resolution....

  10. The Culure Assimilator: An Approach to Cross-Cultural Training

    Science.gov (United States)

    Fiedler, Fred E.; And Others

    1971-01-01

    Evaluates the cultural assimilator, a kind of training manual to help members of one culture understand and adjust to another culture. Describes those constructed for the Arab countries, Iran, Thailand, Central America, and Greece. (MB)

  11. Data Assimilation in Hydrodynamic Models of Continental Shelf Seas

    DEFF Research Database (Denmark)

    Sørensen, Jacob Viborg Tornfeldt

    2004-01-01

    and forecast skill in the Inner Danish Waters. The framework for combining data assimilation and off-line error correction techniques is discussed and presented. Early results show a potential for such an approach, but a more elaborate investigation is needed to further develop the idea. Finally, work has been......This thesis consists of seven research papers published or submitted for publication in the period 2002-2004 together with a summary report. The thesis mainly deals with data assimilation of tide gauge data in two- and three-dimensional hydrodynamic models of the continental shelf seas....... Assimilation of sea surface temperature and parameter estimation in hydrodynamic models are also considered. The main focus has been on the development of robust and efficient techniques applicable in real operational settings. The applied assimilation techniques all use a Kalman filter approach. They consist...

  12. Implicit particle methods and their connection with variational data assimilation

    CERN Document Server

    Atkins, Ethan; Chorin, Alexandre J

    2012-01-01

    The implicit particle filter is a sequential Monte Carlo method for data assimilation that guides the particles to the high-probability regions via a sequence of steps that includes minimizations. We present a new and more general derivation of this approach and extend the method to particle smoothing as well as to data assimilation for perfect models. We show that the minimizations required by implicit particle methods are similar to the ones one encounters in variational data assimilation and explore the connection of implicit particle methods with variational data assimilation. In particular, we argue that existing variational codes can be converted into implicit particle methods at a low cost, often yielding better estimates, that are also equipped with quantitative measures of the uncertainty. A detailed example is presented.

  13. Regional Ocean Modeling System (ROMS): Main Hawaiian Islands: Data Assimilating

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Regional Ocean Modeling System (ROMS) 3-day, 3-hourly data assimilating hindcast for the region surrounding the main Hawaiian islands at approximately 4-km...

  14. HYCOM Consortium for Data-Assimilation Ocean Modeling

    Science.gov (United States)

    2002-09-30

    for data assimilation in oceanography. Journal of Marine Systems , 16, 323-340. Wang, Y.M., 2000: The satellite altimeter data derived mean sea surface GSFC98, Geophysical Research Letters, 27, 701-704. 6

  15. Assimilation potential of water column biota: Mesocosm-based evaluations

    Digital Repository Service at National Institute of Oceanography (India)

    Ramaiah, N.; Ansari, Z.A.; Sadhasivan, A.; Naik, S.; Sawkar, K.

    -toxic. It reveals the findings of mesocosm experiments, conducted to evaluate the assimilation potential of water column biota (bacteria, phytoplankton, and zooplankton). Bulk water quantities from coastal locations, characterized by intense tourist activity, were...

  16. North American Land Data Assimilation System Phase 2

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The goal of the North American Land Data Assimilation System (NLDAS) is to construct quality-controlled, and spatially and temporally consistent, land-surface model...

  17. Understanding nitrate assimilation and its regulation in microalgae.

    Science.gov (United States)

    Sanz-Luque, Emanuel; Chamizo-Ampudia, Alejandro; Llamas, Angel; Galvan, Aurora; Fernandez, Emilio

    2015-01-01

    Nitrate assimilation is a key process for nitrogen (N) acquisition in green microalgae. Among Chlorophyte algae, Chlamydomonas reinhardtii has resulted to be a good model system to unravel important facts of this process, and has provided important insights for agriculturally relevant plants. In this work, the recent findings on nitrate transport, nitrate reduction and the regulation of nitrate assimilation are presented in this and several other algae. Latest data have shown nitric oxide (NO) as an important signal molecule in the transcriptional and posttranslational regulation of nitrate reductase and inorganic N transport. Participation of regulatory genes and proteins in positive and negative signaling of the pathway and the mechanisms involved in the regulation of nitrate assimilation, as well as those involved in Molybdenum cofactor synthesis required to nitrate assimilation, are critically reviewed.

  18. Satellite Sounder Data Assimilation for Improving Alaska Region Weather Forecast

    Science.gov (United States)

    Zhu, Jiang; Stevens, E.; Zavodsky, B. T.; Zhang, X.; Heinrichs, T.; Broderson, D.

    2014-01-01

    Data assimilation has been demonstrated very useful in improving both global and regional numerical weather prediction. Alaska has very coarser surface observation sites. On the other hand, it gets much more satellite overpass than lower 48 states. How to utilize satellite data to improve numerical prediction is one of hot topics among weather forecast community in Alaska. The Geographic Information Network of Alaska (GINA) at University of Alaska is conducting study on satellite data assimilation for WRF model. AIRS/CRIS sounder profile data are used to assimilate the initial condition for the customized regional WRF model (GINA-WRF model). Normalized standard deviation, RMSE, and correlation statistic analysis methods are applied to analyze one case of 48 hours forecasts and one month of 24-hour forecasts in order to evaluate the improvement of regional numerical model from Data assimilation. The final goal of the research is to provide improved real-time short-time forecast for Alaska regions.

  19. A Simple Lightning Assimilation Technique For Improving Retrospective WRF Simulations

    Science.gov (United States)

    Convective rainfall is often a large source of error in retrospective modeling applications. In particular, positive rainfall biases commonly exist during summer months due to overactive convective parameterizations. In this study, lightning assimilation was applied in the Kain...

  20. Emulator-assisted data assimilation in complex models

    Science.gov (United States)

    Margvelashvili, Nugzar Yu; Herzfeld, Mike; Rizwi, Farhan; Mongin, Mathieu; Baird, Mark E.; Jones, Emlyn; Schaffelke, Britta; King, Edward; Schroeder, Thomas

    2016-09-01

    Emulators are surrogates of complex models that run orders of magnitude faster than the original model. The utility of emulators for the data assimilation into ocean models is still not well understood. High complexity of ocean models translates into high uncertainty of the corresponding emulators which may undermine the quality of the assimilation schemes based on such emulators. Numerical experiments with a chaotic Lorenz-95 model are conducted to illustrate this point and suggest a strategy to alleviate this problem through the localization of the emulation and data assimilation procedures. Insights gained through these experiments are used to design and implement data assimilation scenario for a 3D fine-resolution sediment transport model of the Great Barrier Reef (GBR), Australia.

  1. Regional Ocean Modeling System (ROMS): CNMI: Data Assimilating

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Regional Ocean Modeling System (ROMS) 3-day, 3-hourly data assimilating hindcast for the region surrounding the Commonwealth of the Northern Mariana Islands (CNMI)...

  2. Understanding nitrate assimilation and its regulation in microalgae

    Directory of Open Access Journals (Sweden)

    Emanuel eSanz-Luque

    2015-10-01

    Full Text Available Nitrate assimilation is a key process for nitrogen (N acquisition in green microalgae. Among Chlorophyte algae, Chlamydomonas reinhardtii has resulted to be a good model system to unravel important facts of this process, and has provided important insights for agriculturally relevant plants. In this work, the recent findings on nitrate transport, nitrate reduction and the regulation of nitrate assimilation are presented in this and several other algae. Latest data have shown nitric oxide (NO as an important signal molecule in the transcriptional and posttranslational regulation of nitrate reductase and inorganic N transport. Participation of regulatory genes and proteins in positive and negative signaling of the pathway and the mechanisms involved in the regulation of nitrate assimilation, as well as those involved in Molybdenum cofactor synthesis required to nitrate assimilation, are critically reviewed.

  3. Implicit Sampling, with Application to Data Assimilation

    Institute of Scientific and Technical Information of China (English)

    Alexandre J.CHORIN; Matthias MORZFELD; Xuemin TU

    2013-01-01

    There are many computational tasks,in which it is necessary to sample a given probability density function (or pdf for short),i.e.,to use a computer to construct a sequence of independent random vectors xi (i =1,2,...),whose histogram converges to the given pdf.This can be difficult because the sample space can be huge,and more importantly,because the portion of the space,where the density is significant,can be very small,so that one may miss it by an ill-designed sampling scheme.Indeed,Markovchain Monte Carlo,the most widely used sampling scheme,can be thought of as a search algorithm,where one starts at an arbitrary point and one advances step-by-step towards the high probability region of the space.This can be expensive,in particular because one is typically interested in independent samples,while the chain has a memory.The authors present an alternative,in which samples are found by solving an algebraic equation with a random right-hand side rather than by following a chain; each sample is independent of the previous samples.The construction in the context of numerical integration is explained,and then it is applied to data assimilation.

  4. Hybrid Data Assimilation without Ensemble Filtering

    Science.gov (United States)

    Todling, Ricardo; Akkraoui, Amal El

    2014-01-01

    The Global Modeling and Assimilation Office is preparing to upgrade its three-dimensional variational system to a hybrid approach in which the ensemble is generated using a square-root ensemble Kalman filter (EnKF) and the variational problem is solved using the Grid-point Statistical Interpolation system. As in most EnKF applications, we found it necessary to employ a combination of multiplicative and additive inflations, to compensate for sampling and modeling errors, respectively and, to maintain the small-member ensemble solution close to the variational solution; we also found it necessary to re-center the members of the ensemble about the variational analysis. During tuning of the filter we have found re-centering and additive inflation to play a considerably larger role than expected, particularly in a dual-resolution context when the variational analysis is ran at larger resolution than the ensemble. This led us to consider a hybrid strategy in which the members of the ensemble are generated by simply converting the variational analysis to the resolution of the ensemble and applying additive inflation, thus bypassing the EnKF. Comparisons of this, so-called, filter-free hybrid procedure with an EnKF-based hybrid procedure and a control non-hybrid, traditional, scheme show both hybrid strategies to provide equally significant improvement over the control; more interestingly, the filter-free procedure was found to give qualitatively similar results to the EnKF-based procedure.

  5. Assimilate partitioning in avocado, Persea americana

    Energy Technology Data Exchange (ETDEWEB)

    Finazzo, S.; Davenport, T.L.

    1986-04-01

    Assimilate partitioning is being studied in avocado, Persea americana cv. Millborrow in relation to fruit set. Single leaves on girdled branches of 10 year old trees were radiolabeled for 1 hr with 13..mu..Ci of /sup 14/CO/sub 2/. The source leaves were sampled during the experiment to measure translocation rates. At harvest the sink tissues were dissected and the incorporated radioactivity was measured. The translocation of /sup 14/C-labelled compounds to other leaves was minimal. Incorporation of label into fruitlets varied with the tissue and the stage of development. Sink (fruitlets) nearest to the labelled leaf and sharing the same phyllotaxy incorporated the most /sup 14/C. Source leaves for single non-abscising fruitlets retained 3X more /sup 14/C-labelled compounds than did source leaves for 2 or more fruitlets at 31 hrs. post-labelling. Export of label decreased appreciably when fruitlets abscised. If fruitlets abscised within 4 days of labeling then the translocation pattern was similar to the pattern for single fruitlets. If the fruitlet abscised later, the translocation pattern was intermediate between the single and double fruitlet pattern.

  6. Assimilating compact phase space retrievals of atmospheric composition with WRF-Chem/DART: a regional chemical transport/ensemble Kalman filter data assimilation system

    Science.gov (United States)

    Mizzi, Arthur P.; Arellano, Avelino F., Jr.; Edwards, David P.; Anderson, Jeffrey L.; Pfister, Gabriele G.

    2016-03-01

    This paper introduces the Weather Research and Forecasting Model with chemistry/Data Assimilation Research Testbed (WRF-Chem/DART) chemical transport forecasting/data assimilation system together with the assimilation of compact phase space retrievals of satellite-derived atmospheric composition products. WRF-Chem is a state-of-the-art chemical transport model. DART is a flexible software environment for researching ensemble data assimilation with different assimilation and forecast model options. DART's primary assimilation tool is the ensemble adjustment Kalman filter. WRF-Chem/DART is applied to the assimilation of Terra/Measurement of Pollution in the Troposphere (MOPITT) carbon monoxide (CO) trace gas retrieval profiles. Those CO observations are first assimilated as quasi-optimal retrievals (QORs). Our results show that assimilation of the CO retrievals (i) reduced WRF-Chem's CO bias in retrieval and state space, and (ii) improved the CO forecast skill by reducing the Root Mean Square Error (RMSE) and increasing the Coefficient of Determination (R2). Those CO forecast improvements were significant at the 95 % level. Trace gas retrieval data sets contain (i) large amounts of data with limited information content per observation, (ii) error covariance cross-correlations, and (iii) contributions from the retrieval prior profile that should be removed before assimilation. Those characteristics present challenges to the assimilation of retrievals. This paper addresses those challenges by introducing the assimilation of compact phase space retrievals (CPSRs). CPSRs are obtained by preprocessing retrieval data sets with an algorithm that (i) compresses the retrieval data, (ii) diagonalizes the error covariance, and (iii) removes the retrieval prior profile contribution. Most modern ensemble assimilation algorithms can efficiently assimilate CPSRs. Our results show that assimilation of MOPITT CO CPSRs reduced the number of observations (and assimilation computation

  7. Perceptual assimilation and discrimination of non-native vowel contrasts

    OpenAIRE

    2014-01-01

    Research on language-specific tuning in speech perception has focused mainly on consonants, while that on non-native vowel perception has failed to address whether the same principles apply. Therefore, non-native vowel perception was investigated here in light of relevant theoretical models: The Perceptual Assimilation Model (PAM) and the Natural Referent Vowel (NRV) framework. American-English speakers completed discrimination and L1-assimilation (categorization and goodnes...

  8. Variational Data Assimilation for Optimizing Boundary Conditions in Ocean Models

    CERN Document Server

    Kazantsev, Christine; Tolstykh, Mikhail

    2016-01-01

    The review describes the development of ideas Gury Ivanovich Marchuk in the field of variational data assimilation for ocean models applied in particular in coupled models for long-range weather forecasts. Particular attention is paid to the optimization of boundary conditions on rigid boundaries. As idealized and realistic model configurations are considered. It is shown that the optimization allows us to determine the most sensitive model operators and bring the model solution closer to the assimilated data.

  9. Carbon Assimilation Profiles as a Tool for Identification of Zygomycetes▿

    OpenAIRE

    Schwarz, Patrick; Lortholary, Olivier; Dromer, Françoise; Dannaoui, Eric

    2007-01-01

    Identification of Zygomycetes is difficult and time-consuming by standard microbiological procedures. Carbon assimilation profiles are commonly used for yeast-and bacterial-species identification but rarely for filamentous-fungus identification. Carbon assimilation profiles were evaluated using the commercialized kits ID32C and API 50 CH, which contain 31 and 49 tests, respectively, to serve as simple tools for species identification of Zygomycetes in clinical microbiology laboratories. Fifty...

  10. Nitrate assimilation in plant shoots depends on photorespiration

    OpenAIRE

    Rachmilevitch, Shimon; Cousins, Asaph B.; Bloom, Arnold J

    2004-01-01

    Photorespiration, a process that diminishes net photosynthesis by ≈25% in most plants, has been viewed as the unfavorable consequence of plants having evolved when the atmosphere contained much higher levels of carbon dioxide than it does today. Here we used two independent methods to show that exposure of Arabidopsis and wheat shoots to conditions that inhibited photorespiration also strongly inhibited nitrate assimilation. Thus, nitrate assimilation in both dicotyledonous and monocotyledono...

  11. Immigrants'assimilation process in a segmented labor market

    OpenAIRE

    Rodríguez Planas, Núria; Alcobendas, Miguel Angel

    2010-01-01

    While much of the literature on immigrants' assimilation has focused on countries with a large tradition of receiving immigrants and with flexible labor markets, very little is known on how immigrants adjust to other types of host economies. With its severe dual labor market, and an unprecedented immigration boom, Spain presents a quite unique experience to analyze immigrations' assimilation process. Using data from the 2000 to 2008 Labor Force Survey, we find that immigrants are more occupat...

  12. A Memory-Process Model of Symbolic Assimilation

    Science.gov (United States)

    1974-04-01

    p AD/A-004 331 A MEMORY- PROCESS MODEL OF SYMBOLIC ASSIMILATION William C. Mann Carnegie-Mellon University Prepared for...performing all of the tasksj. ■ - -- —-■■■--■’- - . — ^ - - - - - - - "’ " A MEMORY- PROCESS MODEL OF SYMBOLIC ASSIMILATION William C. Minn...This contrasts with process models of human perception which m st receive their stimulus information one whole stimulus at a time. The system is

  13. Cholesterol Assimilation by Lactobacillus Probiotic Bacteria: An In Vitro Investigation

    Directory of Open Access Journals (Sweden)

    Catherine Tomaro-Duchesneau

    2014-01-01

    Full Text Available Excess cholesterol is associated with cardiovascular diseases (CVD, an important cause of mortality worldwide. Current CVD therapeutic measures, lifestyle and dietary interventions, and pharmaceutical agents for regulating cholesterol levels are inadequate. Probiotic bacteria have demonstrated potential to lower cholesterol levels by different mechanisms, including bile salt hydrolase activity, production of compounds that inhibit enzymes such as 3-hydroxy-3-methylglutaryl coenzyme A, and cholesterol assimilation. This work investigates 11 Lactobacillus strains for cholesterol assimilation. Probiotic strains for investigation were selected from the literature: Lactobacillus reuteri NCIMB 11951, L. reuteri NCIMB 701359, L. reuteri NCIMB 702655, L. reuteri NCIMB 701089, L. reuteri NCIMB 702656, Lactobacillus fermentum NCIMB 5221, L. fermentum NCIMB 8829, L. fermentum NCIMB 2797, Lactobacillus rhamnosus ATCC 53103 GG, Lactobacillus acidophilus ATCC 314, and Lactobacillus plantarum ATCC 14917. Cholesterol assimilation was investigated in culture media and under simulated intestinal conditions. The best cholesterol assimilator was L. plantarum ATCC 14917 (15.18 ± 0.55 mg/1010 cfu in MRS broth. L. reuteri NCIMB 701089 assimilated over 67% (2254.70 ± 63.33 mg/1010 cfu of cholesterol, the most of all the strains, under intestinal conditions. This work demonstrates that probiotic bacteria can assimilate cholesterol under intestinal conditions, with L. reuteri NCIMB 701089 showing great potential as a CVD therapeutic.

  14. Short-term induction of assimilation and accommodation.

    Science.gov (United States)

    Leipold, Bernhard; Bermeitinger, Christina; Greve, Werner; Meyer, Birgit; Arnold, Manuel; Pielniok, Marianna

    2014-01-01

    The dual-process model of developmental regulation distinguishes two processes of self-regulation (assimilation = tenacious goal pursuit, and accommodation = flexible goal adjustment) that depend on differing conditions, but both contribute to successful development. Four experiments were conducted to investigate whether assimilation and accommodation can be induced or at least shifted by sensorimotor and cognitive manipulations. Experiment 1 investigated the relation between body manipulation and self-regulation. It was shown that assimilation could be triggered when participants were asked to hold on to golf balls as compared to being asked to drop them. Experiment 2 showed that a semantic priming of "let go" or "hold on" via instructions influenced the processes of self-regulation. Experiment 3 and Experiment 4 investigated the role of cognitive sets (divergent thinking) and motivational processes (thinking about one's action resources) in enhancing accommodation or assimilation. As expected, accommodation was triggered by an intervention activating divergent thought, and participants were more assimilative when they thought about their action resources. In sum, the results indicate that assimilation and accommodation can be induced experimentally; they were systematically dependent on physical, cognitive, and motivational states. The implications of the findings were discussed in the light of the dual-process model.

  15. Recent Advances in the GRACE Data Assimilation System (Invited)

    Science.gov (United States)

    Zaitchik, B. F.; Rodell, M.; Kumar, S.; Reichle, R. H.; Bolten, J. D.; Bergaoui, K.

    2013-12-01

    Anomalies in Terrestrial Water Storage (TWS) derived from the Gravity Recovery and Climate Experiment (GRACE) mission have been used effectively to study hydrologic variability and trends at basin scale across diverse climatic and geologic conditions. Many hydrology and water resources applications, however, require water storage estimates at higher spatial resolution, greater temporal frequency, and with greater physical specificity (e.g., groundwater versus soil moisture versus snow) than GRACE alone can offer. The GRACE Data Assimilation System (GRACE-DAS) was developed to merge GRACE information on large-scale TWS anomalies with physically-based advanced Land Surface Models in order to improve model simulation of water storage while disaggregating and downscaling the raw GRACE TWS estimate. The primary assimilation algorithm is a variant of the ensemble Kalman Smoother. In recent years the system has been applied to studies of water resources and drought monitoring over four different continents. These experiences have led to refinements in the assimilation system that include modifications to land surface model parameters and the treatment of irrigation withdrawals, adjustments in the assimilation algorithm for snow updates, and, most recently, the implementation of a gridded observation assimilation capability that allows for a more flexible application of the system. This presentation will provide an overview of current GRACE-DAS capabilities, report on recent innovations in the modeling system, and describe future directions in GRACE data assimilation research and applications.

  16. Assimilate transport in phloem sets conditions for leaf gas exchange.

    Science.gov (United States)

    Nikinmaa, Eero; Hölttä, Teemu; Hari, Pertti; Kolari, Pasi; Mäkelä, Annikki; Sevanto, Sanna; Vesala, Timo

    2013-03-01

    Carbon uptake and transpiration in plant leaves occurs through stomata that open and close. Stomatal action is usually considered a response to environmental driving factors. Here we show that leaf gas exchange is more strongly related to whole tree level transport of assimilates than previously thought, and that transport of assimilates is a restriction of stomatal opening comparable with hydraulic limitation. Assimilate transport in the phloem requires that osmotic pressure at phloem loading sites in leaves exceeds the drop in hydrostatic pressure that is due to transpiration. Assimilate transport thus competes with transpiration for water. Excess sugar loading, however, may block the assimilate transport because of viscosity build-up in phloem sap. Therefore, for given conditions, there is a stomatal opening that maximizes phloem transport if we assume that sugar loading is proportional to photosynthetic rate. Here we show that such opening produces the observed behaviour of leaf gas exchange. Our approach connects stomatal regulation directly with sink activity, plant structure and soil water availability as they all influence assimilate transport. It produces similar behaviour as the optimal stomatal control approach, but does not require determination of marginal cost of water parameter.

  17. Cotton Assorting Technical Standard and Application Research Based on HVI Data%基于HVI数据的配棉技术标准及应用研究

    Institute of Scientific and Technical Information of China (English)

    邱兆宝; 张红

    2012-01-01

    Cotton assorting technical standard and application effect based on HVI data were researched. Cotton assorting technical standard consisted by technical grade, coefficient of variation of technical grade, color grade, yellow degree coefficient of variation were introduced. Effects of raw cotton internal and external quality index to yarn quality were analyzed. The data show when yellow degree coefficient of variation exceed 12% ,yarn color difference will be larger. In this condition, the cotton assorting case is not feasible even if yarn quality forecast value can fit the demands. It is considered that technical standard and coefficient of variation of technical grade is related closely with yarn inner quality , color grade and yellow degree coefficient of variation effect yarn color difference directly. Cotton assorting technical standard is the important foundation of making cotton assorting case and designing yarn processing.%研究基于HVI数据的配棉技术标准及应用效果.介绍了由技术品级、技术品级变异系数、色特征级和黄度变异系数组成的配棉技术标准,分析了原棉内外在质量指标对成纱质量的影响.通过实例数据表明:当黄度变异系数超过12%时,成纱色差将逐渐加重,这时即便成纱质量预测值符合要求,其配棉方案也不可行.认为:技术品级和技术品级变异系数与成纱内在质量密切相关,色特征级和黄度变异系数对成纱的色差有直接影响.配棉技术标准是制订配棉方案和设计纺纱工艺的重要依据.

  18. Algorithm design and influence analysis of assortativity changing in given degree distribution%确定度分布条件下可变同配系数的算法构造与影响分析∗

    Institute of Scientific and Technical Information of China (English)

    李静; 张洪欣; 王小娟; 金磊

    2016-01-01

    Complex network is the abstract topology of a large number of nodes and edges in reality. How to reveal the influences of internal network topology on network connectivity and vulnerability characteristics is a hotspot of current research. In this paper, we analyze the influence of assortativity according to Newman’s definition of assortativity in a given degree distribution. To fully understand the influence of assortativity we should change the assortativity to see how the topology of network changes. But we find the existing greedy algorithm cannot improve assortativity effectively. First we put forward a deterministic algorithm based on degree distribution and an uncertain algorithm based on probability distribution to increase assortativity. The deterministic algorithm can create a certain network which has a large assortativity without changing node degree. The uncertain algorithm can increase the assortativity continuously by changing the connection of edges. And the uncertain algorithm creates different graphs each time, so the result of the algorithm is uncertain. Then we test our algorithms on three networks (ER network, BA network, Email network) and compare with greedy algorithm, and the experimental results show that the uncertain algorithm performs better than greedy algorithm in three networks which have a large span of assortativity. And our deterministic algorithm performs well in a real world network. We find that we can increase assortativity coefficient up to 1 in ER network. This is because nodes in the ER network are peer to peer. We can also show that that the assortativity cannot increase up to 1 in some networks because nodes in these networks are not in the same status. Because we obtain a large span of assortativity, we can fully understand the change of network topology. On this basis, we analyze the changes of clustering coefficient when using the uncertain algorithm based on a probability distribution to increase the assortativity

  19. Assimilation of IRS-P4 (MSMR) meteorological data in the NCMRWF global data assimilation system

    Indian Academy of Sciences (India)

    Rupa Kamineni; S R H Rizvi; S C Kar; U C Mohanty; R K Paliwal

    2002-09-01

    Oceansat-1 was successfully launched by India in 1999, with two payloads, namely Multi-frequency Scanning Microwave Radiometer (MSMR) and Ocean Color Monitor (OCM) to study the biological and physical parameters of the ocean. The MSMR sensor is configured as an eight-channel radiometer using four frequencies with dual polarization. The MSMR data at 75km resolution from the Oceansat-I have been assimilated in the National Centre for Medium Range Weather Forecasting (NCMRWF) data assimilation forecast system. The operational analysis and forecast system at NCMRWF is based on a T80L18 global spectral model and Spectral Statistical Inter-polation (SSI) scheme for data analysis. The impact of the MSMR data is seen globally, however it is significant over the oceanic region where conventional data are rare. The dry-nature of the control analyses have been removed by utilizing the MSMR data. Therefore, the total precipitable water data from MSMR has been identified as a very crucial parameter in this study. The impact of surface wind speed from MSMR is to increase easterlies over the tropical Indian Ocean. Shifting of the positions of westerly troughs and ridges in the south Indian Ocean has contributed to reduction of temperature to around 30°S.

  20. Assimilating ESA-CCI Soil Moisture into the JULES-EMPIRE Data Assimilation System

    Science.gov (United States)

    Quaife, T. L.; Black, E.; Browne, P.; Lewis, J.

    2015-12-01

    Land surface models, such as the Joint UK Land Environment Simulator (JULES, the land surface component of the Hadley Centre models) are used in a wide variety of applications, such as climate modelling, flood prediction and crop yield forecasting. However, how best to implement Data Assimilation (DA) for these models remains an open question. At a fundamental level these models are very different from atmospheric models for which traditional DA was developed. This poster describes the integration of JULES with the EMPIRE framework. EMPIRE (Employing MPI for Researching Ensembles) implements a test bed for ensemble based DA techniques that makes use of MPI message passing to exploit all available processing power. In particular EMPIRE contains several flavours of Particle Filter which show promise for the land surface DA problem. Examples of assimilating soil moisture observations from the ESA CCI data set into JULES are given for a number of sites in Africa. The model ensemble is generated by considering uncertainty in the driving data taken from the TAMSAT operational rainfall product. The results show considerable improvement in the modelled soil moisture and in particular the seasonal timing of the soil wetness.

  1. Variational assimilation of satellite cloud water/ice path and microphysics scheme sensitivity to the assimilation of a rainfall case

    Science.gov (United States)

    Chen, Yaodeng; Zhang, Ruizhi; Meng, Deming; Min, Jinzhong; Zhang, Lina

    2016-10-01

    Hydrometeor variables (cloud water and cloud ice mixing ratios) are added into the WRF three-dimensional variational assimilation system as additional control variables to directly analyze hydrometeors by assimilating cloud observations. In addition, the background error covariance matrix of hydrometeors is modeled through a control variable transform, and its characteristics discussed in detail. A suite of experiments using four microphysics schemes (LIN, SBU-YLIN, WDM6 and WSM6) are performed with and without assimilating satellite cloud liquid/ice water path. We find analysis of hydrometeors with cloud assimilation to be significantly improved, and the increment and distribution of hydrometeors are consistent with the characteristics of background error covariance. Diagnostic results suggest that the forecast with cloud assimilation represents a significant improvement, especially the ability to forecast precipitation in the first seven hours. It is also found that the largest improvement occurs in the experiment using the WDM6 scheme, since the assimilated cloud information can sustain for longer in this scheme. The least improvement, meanwhile, appears in the experiment using the SBU-YLIN scheme.

  2. GST M1-T1 null allele frequency patterns in geographically assorted human populations: a phylogenetic approach.

    Science.gov (United States)

    Kasthurinaidu, Senthilkumar Pitchalu; Ramasamy, Thirumurugan; Ayyavoo, Jayachitra; Dave, Dhvani Kirtikumar; Adroja, Divya Anantray

    2015-01-01

    Genetic diversity in drug metabolism and disposition is mainly considered as the outcome of the inter-individual genetic variation in polymorphism of drug-xenobiotic metabolizing enzyme (XME). Among the XMEs, glutathione-S-transferases (GST) gene loci are an important candidate for the investigation of diversity in allele frequency, as the deletion mutations in GST M1 and T1 genotypes are associated with various cancers and genetic disorders of all major Population Affiliations (PAs). Therefore, the present population based phylogenetic study was focused to uncover the frequency distribution pattern in GST M1 and T1 null genotypes among 45 Geographically Assorted Human Populations (GAHPs). The frequency distribution pattern for GST M1 and T1 null alleles have been detected in this study using the data derived from literatures representing 44 populations affiliated to Africa, Asia, Europe, South America and the genome of PA from Gujarat, a region in western India. Allele frequency counting for Gujarat PA and scattered plot analysis for geographical distribution among the PAs were performed in SPSS-21. The GST M1 and GST T1 null allele frequencies patterns of the PAs were computed in Seqboot, Gendist program of Phylip software package (3.69 versions) and Unweighted Pair Group method with Arithmetic Mean in Mega-6 software. Allele frequencies from South African Xhosa tribe, East African Zimbabwe, East African Ethiopia, North African Egypt, Caucasian, South Asian Afghanistan and South Indian Andhra Pradesh have been identified as the probable seven patterns among the 45 GAHPs investigated in this study for GST M1-T1 null genotypes. The patternized null allele frequencies demonstrated in this study for the first time addresses the missing link in GST M1-T1 null allele frequencies among GAHPs.

  3. Bos taurus genome sequence reveals the assortment of immunoglobulin and surrogate light chain genes in domestic cattle

    Directory of Open Access Journals (Sweden)

    Liljavirta Jenni

    2009-04-01

    Full Text Available Abstract Background The assortment of cattle immunoglobulin and surrogate light chain genes has been extracted from the version 3.1 of Bos taurus genome sequence as a part of an international effort to sequence and annotate the bovine genome. Results 63 variable lambda chain and 22 variable kappa chain genes were identified and phylogenetically assigned to 8 and 4 subgroups, respectively. The specified phylogenetic relationships are compatible with the established ruminant light chain variable gene families or subgroups. Because of gaps and uncertainties in the assembled genome sequence, the number of genes might change in the future versions of the genome sequence. In addition, three bovine surrogate light chain genes were identified. The corresponding cDNAs were cloned and the expression of the surrogate light chain genes was demonstrated from fetal material. Conclusion The bovine kappa gene locus is compact and simple which may reflect the preferential use of the lambda chain in cattle. The relative orientation of variable and joining genes in both loci are consistent with a deletion mechanism in VJ joining. The orientation of some variable genes cannot be determined from the data available. The number of functional variable genes is moderate when compared to man or mouse. Thus, post-recombinatorial mechanisms might contribute to the generation of the bovine pre-immune antibody repertoire. The heavy chains probably contribute more to recombinational immunoglobulin repertoire diversity than the light chains but the heavy chain locus could not be annotated from the version 3.1 of Bos taurus genome.

  4. GST M1-T1 null allele frequency patterns in geographically assorted human populations: a phylogenetic approach.

    Directory of Open Access Journals (Sweden)

    Senthilkumar Pitchalu Kasthurinaidu

    Full Text Available Genetic diversity in drug metabolism and disposition is mainly considered as the outcome of the inter-individual genetic variation in polymorphism of drug-xenobiotic metabolizing enzyme (XME. Among the XMEs, glutathione-S-transferases (GST gene loci are an important candidate for the investigation of diversity in allele frequency, as the deletion mutations in GST M1 and T1 genotypes are associated with various cancers and genetic disorders of all major Population Affiliations (PAs. Therefore, the present population based phylogenetic study was focused to uncover the frequency distribution pattern in GST M1 and T1 null genotypes among 45 Geographically Assorted Human Populations (GAHPs. The frequency distribution pattern for GST M1 and T1 null alleles have been detected in this study using the data derived from literatures representing 44 populations affiliated to Africa, Asia, Europe, South America and the genome of PA from Gujarat, a region in western India. Allele frequency counting for Gujarat PA and scattered plot analysis for geographical distribution among the PAs were performed in SPSS-21. The GST M1 and GST T1 null allele frequencies patterns of the PAs were computed in Seqboot, Gendist program of Phylip software package (3.69 versions and Unweighted Pair Group method with Arithmetic Mean in Mega-6 software. Allele frequencies from South African Xhosa tribe, East African Zimbabwe, East African Ethiopia, North African Egypt, Caucasian, South Asian Afghanistan and South Indian Andhra Pradesh have been identified as the probable seven patterns among the 45 GAHPs investigated in this study for GST M1-T1 null genotypes. The patternized null allele frequencies demonstrated in this study for the first time addresses the missing link in GST M1-T1 null allele frequencies among GAHPs.

  5. Reovirus genome segment assortment into progeny genomes studied by the use of monoclonal antibodies directed against reovirus proteins.

    Science.gov (United States)

    Antczak, J B; Joklik, W K

    1992-04-01

    Using a panel of monoclonal antibodies (MABs) against reovirus proteins, we have identified proteins that associate with reovirus messenger RNA molecules prior to the generation of progeny double-stranded (ds) genome segments and proteins that are components of the structures within which progeny ds genome segments are generated. The following conclusions can be drawn from the results obtained. (1) Three proteins rapidly become associated with mRNA molecules to form single-stranded RNA-containing complexes (ssRCCs): the nonstructural protein microNS, the nonstructural protein sigma NS, and protein sigma 3. (2) Analysis of populations of ssRCCs in density gradients and by sequential exposure to various MABs indicates that some ssRCCs contain only microNS, others microNS and sigma NS or sigma 3, and others all three proteins. Each ssRCC contains one RNA molecule and, depending on the size of the RNA, 10-30 protein molecules. (3) The relative proportions of the individual RNA species in the ssRCC populations reflect the composition of the total mRNA population present in infected cells (which differs substantially from equimolarity). (4) RCCs that contain dsRNA, which become detectable as early as 4 hr after infection, contain not only microNS, sigma NS, and sigma 3, but also lambda 2. (5) The relative proportions of the 10 genome segments in dsRCCs are equimolar. This suggests that genome segment assortment into progeny genomes is linked to the transcription of plus strands into minus strands.

  6. Impacts of data assimilation on the global ocean carbonate system

    Science.gov (United States)

    Visinelli, L.; Masina, S.; Vichi, M.; Storto, A.; Lovato, T.

    2016-06-01

    In an ocean reanalysis, historical observations are combined with ocean and biogeochemical general circulation models to produce a reconstruction of the oceanic properties in past decades. This is one possible method to better constrain the role of the ocean carbon cycle in the determination of the air-sea CO2 flux. In this work, we investigate how the assimilation of physical variables and subsequently the combined assimilation of physical data and inorganic carbon variables - namely dissolved inorganic carbon (DIC) and alkalinity - affect the modelling of the marine carbonate system and the related air-sea CO2 fluxes. The performance of the two assimilation exercises are quantitatively assessed against the assimilated DIC and alkalinity data and the independent ocean surface pCO2 observations from global datasets. We obtain that the assimilation of physical observations has contrasting effects in different ocean basins when compared with the DIC and alkalinity data: it reduces the root-mean square error against the observed pCO2 in the Atlantic and Southern oceans, while increases the model error in the North Pacific and Indian Oceans. In both cases the corrected evaporation rates are the major factor determining the changes in concentrations. The assimilation of inorganic carbon variables on top of the physical data gives a generalized improvement in the model error of inorganic carbon variables, also improving the annual mean and spatial distribution of air-sea fluxes in agreement with other published estimates. These results indicate that data assimilation of physical and inorganic carbon data does not guarantee the improvement of the simulated pCO2 in all the oceanic regions; nevertheless, errors in pCO2 are reduced by a factor corresponding to those associated with the air-sea flux formulations.

  7. Assimilation of GPM GMI Rainfall Product with WRF GSI

    Science.gov (United States)

    Li, Xuanli; Mecikalski, John; Zavodsky, Bradley

    2015-01-01

    The Global Precipitation Measurement (GPM) is an international mission to provide next-generation observations of rain and snow worldwide. The GPM built on Tropical Rainfall Measuring Mission (TRMM) legacy, while the core observatory will extend the observations to higher latitudes. The GPM observations can help advance our understanding of precipitation microphysics and storm structures. Launched on February 27th, 2014, the GPM core observatory is carrying advanced instruments that can be used to quantify when, where, and how much it rains or snows around the world. Therefore, the use of GPM data in numerical modeling work is a new area and will have a broad impact in both research and operational communities. The goal of this research is to examine the methodology of assimilation of the GPM retrieved products. The data assimilation system used in this study is the community Gridpoint Statistical Interpolation (GSI) system for the Weather Research and Forecasting (WRF) model developed by the Development Testbed Center (DTC). The community GSI system runs in independently environment, yet works functionally equivalent to operational centers. With collaboration with the NASA Short-term Prediction Research and Transition (SPoRT) Center, this research explores regional assimilation of the GPM products with case studies. Our presentation will highlight our recent effort on the assimilation of the GPM product 2AGPROFGMI, the retrieved Microwave Imager (GMI) rainfall rate data for initializing a real convective storm. WRF model simulations and storm scale data assimilation experiments will be examined, emphasizing both model initialization and short-term forecast of precipitation fields and processes. In addition, discussion will be provided on the development of enhanced assimilation procedures in the GSI system with respect to other GPM products. Further details of the methodology of data assimilation, preliminary result and test on the impact of GPM data and the

  8. Tropospheric and Stratospheric Ozone From Assimilation of Aura Data

    Science.gov (United States)

    Stajner, I.; Wargan, K.; Chang, L.; Hayashi, H.; Pawson, S.; Froidevaux, L.; Livesey, N.; Bhartia, P. K.; Bowman, K.

    2006-05-01

    Ozone is an atmospheric trace gas with multiple impacts on the environment. Global ozone fields are needed for air quality predictions, estimation of the ultraviolet radiation reaching the surface, climate-radiation studies, and ozone may also have an impact on longer-term weather predictions. We estimate global ozone fields in the stratosphere and troposphere by combining the data from the EOS Aura satellite with an ozone model using data assimilation. Ozone exhibits a large temporal variability in the lower stratosphere. Our previous work showed that assimilation of satellite data from limb-sounding geometry helps constrain ozone profiles in that region. We assimilated ozone data from the Aura Microwave Limb Sounder (MLS) and the Ozone Monitoring Instrument (OMI) into the ozone system at NASA's Global Modeling and Assimilation Office (GMAO). Ozone is transported within a general circulation model (GCM) which includes parameterizations for stratospheric photochemistry, tropospheric chemistry, and a simple scheme for heterogeneous ozone loss. The focus of this study is on the representation of ozone in the lower stratosphere and tropospheric ozone columns. We plan to extend studies of tropospheric ozone distribution through assimilation of ozone data from the Tropospheric Emission Spectrometer (TES). Comparisons with ozone sondes and occultation data show that assimilation of Aura data provides a good representation of ozone gradients and variability in the lower stratosphere. We proceed by separating the contributions to temporal changes in the ozone field into those that are due to the model and those that are due to the assimilation of Aura data. We discuss the impacts of Aura data and their role in the representation of ozone variability in the lower stratosphere and troposphere.

  9. DART: A Community Facility for Ensemble Data Assimilation

    Science.gov (United States)

    Hoar, T. J.; Raeder, K.; Anderson, J. L.; Collins, N.; Liu, H.; Romine, G.; Arellano, A. F.; Lawson, G.

    2009-12-01

    The Data Assimilation Research Testbed (DART) is a mature community software facility providing researchers access to state-of-the-art ensemble data assimilation tools. The freely-available DART distribution includes fully functional low-order and high-order models, support for commonly available observations, hooks to easily add both new models and observation types, diagnostic programs to interpret the results, and a full tutorial suitable for self-study or teaching data assimilation concepts, including exercises using the models distributed with DART. DART is used regularly with a number of geophysical models including NCAR's WRF and CAM atmospheric models. DART/WRF is being used for tropical storm analysis and prediction in the Pacific and Atlantic and was used to produce real-time predictions during the 2009 Atlantic hurricane season. DART/CAM has played an integral part in the development of the new CAM version 4 that will be used for NCAR's contribution to the next IPCC. DART/CAM has been run for many model configurations to evaluate CAM systematic errors and parameterization options. DART is also in use for chemical assimilation in the WRF-CHEM and CAM-CHEM versions of these models. New models, both small and large continue to be added to the set compatible with DART. During 2009, DART assimilation was developed for the POP (Parallel Ocean Program) ocean general circulation model that is being used for decadal coupled atmosphere/ocean predictions at NCAR. The newest version of the Planet WRF model, configured for Martian data assimilation, is also now in use with DART. Novel observation types also continue to be added to DART. For instance, assimilation capabilities for radiance observations from the COSMIC and MOPITT instruments on earth and from TES on Mars have been added in 2009.

  10. A new assimilation method with physical mechanism to estimate evapotranspiration

    Science.gov (United States)

    Ye, Wen; Xu, Xinyi

    2016-04-01

    The accurate estimation of regional evapotranspiration has been a research hotspot in the field of hydrology and water resources both in domestic and abroad. A new assimilation method with physical mechanism was proposed to estimate evapotranspiration, which was easier to apply. Based on the evapotranspiration (ET) calculating method with soil moisture recurrence relations in the Distributed Time Variant Gain Model (DTVGM) and Ensemble Kalman Filter (EnKF), it constructed an assimilation system for recursive calculation of evapotranspiration in combination with "observation value" by the retrieval data of evapotranspiration through the Two-Layer Remote Sensing Model. By updating the filter in the model with assimilated evapotranspiration, synchronization correction to the model estimation was achieved and more accurate time continuous series values of evapotranspiration were obtained. Through the verification of observations in Xiaotangshan Observatory and hydrological stations in the basin, the correlation coefficient of remote sensing inversion evapotranspiration and actual evapotranspiration reaches as high as 0.97, and the NS efficiency coefficient of DTVGM model was 0.80. By using the typical daily evapotranspiration from Remote Sensing and the data from DTVGM Model, we assimilated the hydrological simulation processes with DTVGM Model in Shahe Basin in Beijing to obtain continuous evapotranspiration time series. The results showed that the average relative error between the remote sensing values and DTVGM simulations is about 12.3%, and for the value between remote sensing retrieval data and assimilation values is 4.5%, which proved that the assimilation results of Ensemble Kalman Filter (EnKF) were closer to the "real" data, and was better than the evapotranspiration simulated by DTVGM without any improvement. Keyword Evapotranspiration assimilation Ensemble Kalman Filter Distributed hydrological model Two-Layer Remote Sensing Model

  11. Assimilation of Altimeter Data into a Quasigeostrophic Model of the Gulf Stream System. Part 2; Assimilation Results

    Science.gov (United States)

    Capotondi, Antonietta; Holland, William R.; Malanotte-Rizzoli, Paola

    1995-01-01

    The improvement in the climatological behavior of a numerical model as a consequence of the assimilation of surface data is investigated. The model used for this study is a quasigeostrophic (QG) model of the Gulf Stream region. The data that have been assimilated are maps of sea surface height that have been obtained as the superposition of sea surface height variability deduced from the Geosat altimeter measurements and a mean field constructed from historical hydrographic data. The method used for assimilating the data is the nudging technique. Nudging has been implemented in such a way as to achieve a high degree of convergence of the surface model fields toward the observations. Comparisons of the assimilation results with available in situ observations show a significant improvement in the degree of realism of the climatological model behavior, with respect to the model in which no data are assimilated. The remaining discrepancies in the model mean circulation seem to be mainly associated with deficiencies in the mean component of the surface data that are assimilated. On the other hand, the possibility of building into the model more realistic eddy characteristics through the assimilation of the surface eddy field proves very successful in driving components of the mean model circulation that are in relatively good agreement with the available observations. Comparisons with current meter time series during a time period partially overlapping the Geosat mission show that the model is able to 'correctly' extrapolate the instantaneous surface eddy signals to depths of approximately 1500 m. The correlation coefficient between current meter and model time series varies from values close to 0.7 in the top 1500 m to values as low as 0.1-0.2 in the deep ocean.

  12. An integrated GIS application system for soil moisture data assimilation

    Science.gov (United States)

    Wang, Di; Shen, Runping; Huang, Xiaolong; Shi, Chunxiang

    2014-11-01

    The gaps in knowledge and existing challenges in precisely describing the land surface process make it critical to represent the massive soil moisture data visually and mine the data for further research.This article introduces a comprehensive soil moisture assimilation data analysis system, which is instructed by tools of C#, IDL, ArcSDE, Visual Studio 2008 and SQL Server 2005. The system provides integrated service, management of efficient graphics visualization and analysis of land surface data assimilation. The system is not only able to improve the efficiency of data assimilation management, but also comprehensively integrate the data processing and analysis tools into GIS development environment. So analyzing the soil moisture assimilation data and accomplishing GIS spatial analysis can be realized in the same system. This system provides basic GIS map functions, massive data process and soil moisture products analysis etc. Besides,it takes full advantage of a spatial data engine called ArcSDE to effeciently manage, retrieve and store all kinds of data. In the system, characteristics of temporal and spatial pattern of soil moiture will be plotted. By analyzing the soil moisture impact factors, it is possible to acquire the correlation coefficients between soil moisture value and its every single impact factor. Daily and monthly comparative analysis of soil moisture products among observations, simulation results and assimilations can be made in this system to display the different trends of these products. Furthermore, soil moisture map production function is realized for business application.

  13. Assimilation of GNSS radio occultation observations in GRAPES

    Science.gov (United States)

    Liu, Y.; Xue, J.

    2014-07-01

    This paper reviews the development of the global navigation satellite system (GNSS) radio occultation (RO) observations assimilation in the Global/Regional Assimilation and PrEdiction System (GRAPES) of China Meteorological Administration, including the choice of data to assimilate, the data quality control, the observation operator, the tuning of observation error, and the results of the observation impact experiments. The results indicate that RO data have a significantly positive effect on analysis and forecast at all ranges in GRAPES not only in the Southern Hemisphere where conventional observations are lacking but also in the Northern Hemisphere where data are rich. It is noted that a relatively simple assimilation and forecast system in which only the conventional and RO observation are assimilated still has analysis and forecast skill even after nine months integration, and the analysis difference between both hemispheres is gradually reduced with height when compared with NCEP (National Centers for Enviromental Prediction) analysis. Finally, as a result of the new onboard payload of the Chinese FengYun-3 (FY-3) satellites, the research status of the RO of FY-3 satellites is also presented.

  14. Effects of bisphenol A on ammonium assimilation in soybean roots.

    Science.gov (United States)

    Sun, Hai; Wang, Li Hong; Zhou, Qing; Huang, Xiao Hua

    2013-12-01

    Bisphenol A (BPA), which is ubiquitous in the environment, is an example of an endocrine-disrupting compound (EDC). Ammonium assimilation has an important function in plant growth and development. However, insufficient information on the potential effect of BPA on ammonium assimilation in plants is available. In this study, the effects of BPA on ammonium assimilation in roots of soybean seedlings were investigated. During the stress period, 1.5 mg L(-1) of BPA improved glutamine synthetase (GS)/glutamate synthase (GOGAT) cycle and glutamate dehydrogenase (GDH) pathway in ammonium assimilation. The amino acid and the soluble protein contents increased in the soybeans. At 17.2 and 50.0 mg L(-1) of BPA, the GS/GOGAT cycle was inhibited and the GDH pathway was promoted. The amino acid content increased and the soluble protein content decreased. During the recovery period, the GS/GOGAT cycle and the GDH pathway recovered at 1.5 and 17.2 mg L(-1) of BPA but not at 50.0 mg L(-1) of BPA. The amino acid content continuously increased and the soluble protein content decreased compared with those in the control treatment. In summary, BPA treatment could affect the contents of soluble protein and amino acid in the soybean roots by regulating ammonium assimilation.

  15. Assimilation impacts on Arctic Ocean circulation, heat and freshwater budgets

    Science.gov (United States)

    Zuo, Hao; Mugford, Ruth I.; Haines, Keith; Smith, Gregory C.

    We investigate the Arctic basin circulation, freshwater content (FWC) and heat budget by using a high-resolution global coupled ice-ocean model implemented with a state-of-the-art data assimilation scheme. We demonstrate that, despite a very sparse dataset, by assimilating hydrographic data in and near the Arctic basin, the initial warm bias and drift in the control run is successfully corrected, reproducing a much more realistic vertical and horizontal structure to the cyclonic boundary current carrying the Atlantic Water (AW) along the Siberian shelves in the reanalysis run. The Beaufort Gyre structure and FWC and variability are also more accurately reproduced. Small but important changes in the strait exchange flows are found which lead to more balanced budgets in the reanalysis run. Assimilation fluxes dominate the basin budgets over the first 10 years (P1: 1987-1996) of the reanalysis for both heat and FWC, after which the drifting Arctic upper water properties have been restored to realistic values. For the later period (P2: 1997-2004), the Arctic heat budget is almost balanced without assimilation contributions, while the freshwater budget shows reduced assimilation contributions compensating largely for surface salinity damping, which was extremely strong in this run. A downward trend in freshwater export at the Canadian Straits and Fram Strait is found in period P2, associated with Beaufort Gyre recharge. A detailed comparison with observations and previous model studies at the individual Arctic straits is also included.

  16. OpenDA-NEMO framework for ocean data assimilation

    Science.gov (United States)

    van Velzen, Nils; Altaf, Muhammad Umer; Verlaan, Martin

    2016-05-01

    Data assimilation methods provide a means to handle the modeling errors and uncertainties in sophisticated ocean models. In this study, we have created an OpenDA-NEMO framework unlocking the data assimilation tools available in OpenDA for use with NEMO models. This includes data assimilation methods, automatic parallelization, and a recently implemented automatic localization algorithm that removes spurious correlations in the model based on uncertainties in the computed Kalman gain matrix. We have set up a twin experiment where we assimilate sea surface height (SSH) satellite measurements. From the experiments, we can conclude that the OpenDA-NEMO framework performs as expected and that the automatic localization significantly improves the performance of the data assimilation algorithm by successfully removing spurious correlations. Based on these results, it looks promising to extend the framework with new kinds of observations and work on improving the computational speed of the automatic localization technique such that it becomes feasible to include large number of observations.

  17. Architecting Service Based Sensor Networks for the Intelligent Assimilation

    Directory of Open Access Journals (Sweden)

    R. S. Ponmagal

    2014-01-01

    Full Text Available The aim of this paper is to propose an architectural model for assimilating distributed sensor networks through cloud paradigm. This strategy can be applied to monitor and control the physical parameters such as temperature, pressure, and level. It is proposed to consider the use of service oriented architecture to program and deploy the sensed parameters. The service oriented architecture for sensor network has been implemented in such a way that, for every specific requirement of the monitor center, the assimilation agent invokes the services of the sensors through a registry and the specific changes in the sensed parameters are also notified as auditable event using push interaction pattern of SOA. The assimilation agent serves as an intelligent component by providing authentication services. This SOA is extended to integrate different types of sensor networks through cloud environment. Hence several sensors can be networked together to monitor different process parameters and they have been assimilated with Internet by registering them as services, hence a complete distributed assimilation environment is exploited.

  18. Assimilating surface observations in a four-dimensional variational Doppler radar data assimilation system to improve the analysis and forecast of a squall line case

    Science.gov (United States)

    Chen, Xingchao; Zhao, Kun; Sun, Juanzhen; Zhou, Bowen; Lee, Wen-Chau

    2016-10-01

    This paper examines how assimilating surface observations can improve the analysis and forecast ability of a fourdimensional Variational Doppler Radar Analysis System (VDRAS). Observed surface temperature and winds are assimilated together with radar radial velocity and reflectivity into a convection-permitting model using the VDRAS four-dimensional variational (4DVAR) data assimilation system. A squall-line case observed during a field campaign is selected to investigate the performance of the technique. A single observation experiment shows that assimilating surface observations can influence the analyzed fields in both the horizontal and vertical directions. The surface-based cold pool, divergence and gust front of the squall line are all strengthened through the assimilation of the single surface observation. Three experiments—assimilating radar data only, assimilating radar data with surface data blended in a mesoscale background, and assimilating both radar and surface observations with a 4DVAR cost function—are conducted to examine the impact of the surface data assimilation. Independent surface and wind profiler observations are used for verification. The result shows that the analysis and forecast are improved when surface observations are assimilated in addition to radar observations. It is also shown that the additional surface data can help improve the analysis and forecast at low levels. Surface and low-level features of the squall line—including the surface warm inflow, cold pool, gust front, and low-level wind—are much closer to the observations after assimilating the surface data in VDRAS.

  19. Deterministic treatment of model error in geophysical data assimilation

    CERN Document Server

    Carrassi, Alberto

    2015-01-01

    This chapter describes a novel approach for the treatment of model error in geophysical data assimilation. In this method, model error is treated as a deterministic process fully correlated in time. This allows for the derivation of the evolution equations for the relevant moments of the model error statistics required in data assimilation procedures, along with an approximation suitable for application to large numerical models typical of environmental science. In this contribution we first derive the equations for the model error dynamics in the general case, and then for the particular situation of parametric error. We show how this deterministic description of the model error can be incorporated in sequential and variational data assimilation procedures. A numerical comparison with standard methods is given using low-order dynamical systems, prototypes of atmospheric circulation, and a realistic soil model. The deterministic approach proves to be very competitive with only minor additional computational c...

  20. Correcting biased observation model error in data assimilation

    CERN Document Server

    Harlim, John

    2016-01-01

    While the formulation of most data assimilation schemes assumes an unbiased observation model error, in real applications, model error with nontrivial biases is unavoidable. A practical example is the error in the radiative transfer model (which is used to assimilate satellite measurements) in the presence of clouds. As a consequence, many (in fact 99\\%) of the cloudy observed measurements are not being used although they may contain useful information. This paper presents a novel nonparametric Bayesian scheme which is able to learn the observation model error distribution and correct the bias in incoming observations. This scheme can be used in tandem with any data assimilation forecasting system. The proposed model error estimator uses nonparametric likelihood functions constructed with data-driven basis functions based on the theory of kernel embeddings of conditional distributions developed in the machine learning community. Numerically, we show positive results with two examples. The first example is des...

  1. Storm surge model based on variational data assimilation method

    Institute of Scientific and Technical Information of China (English)

    Shi-li HUANG; Jian XU; De-guan WANG; Dong-yan LU

    2010-01-01

    By combining computation and observation information,the variational data assimilation method has the ability to eliminate errors caused by the uncertainty of parameters in practical forecasting.It was applied to a storm surge model based on unstructured grids with high spatial resolution meant for improving the forecasting accuracy of the storm surge.By controlling the wind stress drag coefficient,the variation-based model was developed and validated through data assimilation tests in an actual storm surge induced by a typhoon.In the data assimilation tests,the model accurately identified the wind stress drag coefficient and obtained results close to the true state.Then,the actual storm surge induced by Typhoon 0515 was forecast by the developed model,and the results demonstrate its efficiency in practical application.

  2. The Impact of the Assimilation of Aquarius Sea Surface Salinity Data in the GEOS Ocean Data Assimilation System

    Science.gov (United States)

    Vernieres, Guillaume Rene Jean; Kovach, Robin M.; Keppenne, Christian L.; Akella, Santharam; Brucker, Ludovic; Dinnat, Emmanuel Phillippe

    2014-01-01

    Ocean salinity and temperature differences drive thermohaline circulations. These properties also play a key role in the ocean-atmosphere coupling. With the availability of L-band space-borne observations, it becomes possible to provide global scale sea surface salinity (SSS) distribution. This study analyzes globally the along-track (Level 2) Aquarius SSS retrievals obtained using both passive and active L-band observations. Aquarius alongtrack retrieved SSS are assimilated into the ocean data assimilation component of Version 5 of the Goddard Earth Observing System (GEOS-5) assimilation and forecast model. We present a methodology to correct the large biases and errors apparent in Version 2.0 of the Aquarius SSS retrieval algorithm and map the observed Aquarius SSS retrieval into the ocean models bulk salinity in the topmost layer. The impact of the assimilation of the corrected SSS on the salinity analysis is evaluated by comparisons with insitu salinity observations from Argo. The results show a significant reduction of the global biases and RMS of observations-minus-forecast differences at in-situ locations. The most striking results are found in the tropics and southern latitudes. Our results highlight the complementary role and problems that arise during the assimilation of salinity information from in-situ (Argo) and space-borne surface (SSS) observations

  3. Assimilation scheme of the Mediterranean Forecasting System: operational implementation

    Directory of Open Access Journals (Sweden)

    E. Demirov

    Full Text Available This paper describes the operational implementation of the data assimilation scheme for the Mediterranean Forecasting System Pilot Project (MFSPP. The assimilation scheme, System for Ocean Forecast and Analysis (SOFA, is a reduced order Optimal Interpolation (OI scheme. The order reduction is achieved by projection of the state vector into vertical Empirical Orthogonal Functions (EOF. The data assimilated are Sea Level Anomaly (SLA and temperature profiles from Expandable Bathy Termographs (XBT. The data collection, quality control, assimilation and forecast procedures are all done in Near Real Time (NRT. The OI is used intermittently with an assimilation cycle of one week so that an analysis is produced once a week. The forecast is then done for ten days following the analysis day. The root mean square (RMS between the model forecast and the analysis (the forecast RMS is below 0.7°C in the surface layers and below 0.2°C in the layers deeper than 200 m for all the ten forecast days. The RMS between forecast and initial condition (persistence RMS is higher than forecast RMS after the first day. This means that the model improves forecast with respect to persistence. The calculation of the misfit between the forecast and the satellite data suggests that the model solution represents well the main space and time variability of the SLA except for a relatively short period of three – four weeks during the summer when the data show a fast transition between the cyclonic winter and anti-cyclonic summer regimes. This occurs in the surface layers that are not corrected by our assimilation scheme hypothesis. On the basis of the forecast skill scores analysis, conclusions are drawn about future improvements.

    Key words. Oceanography; general (marginal and semi-enclosed seas; numerical modeling; ocean prediction

  4. [The development of the assortment and requirements of the tissue bank of the District Institute for Blood Donation and Transfusion Leipzig].

    Science.gov (United States)

    Frank, K; Müller, C

    1990-08-01

    Since the foundation of the tissue bank at the District Institute for Blood Donation--and Transfusion Service of Leipzig in 1966 the range of production and the assortment of nonvital tissue transplants has considerably increased. The amount of clinical establishments and their requirements is considerably increased, in which the realization of demands is not always possible without waiting periods. The main tissue conservation method is the cryo-drying. Besides the extreme cooling and cryo-preservation were used. Problems of transportation of cooled tissue conserves were discussed.

  5. 多品种产品的线性盈亏分析%Linear Profit-loss Balance Analysis of Multi-assortment Production

    Institute of Scientific and Technical Information of China (English)

    薛静

    2001-01-01

    Discusses several analytic methods of the linear profit-loss balance and their applying prerequisites of multi-assortment production in order to get an efficient analytic method and thus increases the profit of an enterprise. A demonstration of the application of these methods is presented.%结合实例,对多品种产品生产销售的几种线性的盈亏平衡分析法及其运用条件进行了探讨和分析,以找到一种有效的分析方法,以提高企业的经济效益.

  6. Impact of Glider Data Assimilation on the Monterey Bay Model

    Science.gov (United States)

    2009-01-01

    Assimilation on the Monterey Bay Model 6. AUTHOR(S) Igor Shulman, Clark Rowley, Stephanie Anderson, Sergio DeRada, John Kindle, Paul Martin, James...Impact of glider data assimilation on the Monterey Bay model Igor Shulman3*, Clark Rowley3, Stephanie Andersona, Sergio DeRadaa, John Kindlea, Paul ...support of the AOSN-II field campaign. Deep-Sea Research II, this issue |doi:10.1016/j.dsr2.2008 08.009). Kundu. P.K.. 1976. Ekman veering observed

  7. Assimilation of radar-based nowcast into HIRLAM NWP model

    DEFF Research Database (Denmark)

    Jensen, David Getreuer; Petersen, Claus; Rasmussen, Michael R.

    2015-01-01

    The present study introduces a nowcast scheme that assimilates radar extrapolation data (RED) into a nowcasting version of the high resolution limited area model (HIRLAM) numerical weather prediction (NWP) model covering the area of Denmark. The RED are based on the Co-TREC (tracking radar echoes...... by correlation) methodology and are generated from cleaned radar mosaics from the Danish weather radar network. The assimilation technique is a newly developed method that increases model precipitation by increasing low-level convergence and decreasing convergence aloft in order to increase the vertical velocity...

  8. Dynamics of vowel-to-vowel assimilation in French.

    OpenAIRE

    2013-01-01

    International audience; Vowel-to-vowel assimilation in French is described as an anticipatory process affecting non-final mid vowels (V1) : [e], [E], [ø], [œ], [o], [O] that assimilate in height to the final tonic vowel (V2). The non-final mid vowel tend to be mid-high before a high or mid-high vowel (e. g. aimer [eme] 'to love'), and mid-low before a low or mid-low vowel (aimable [Emabl] 'kind')[1, 4, 6]. The present study investigates the nature of vowel harmony (VH) in French. Does vowel a...

  9. Perceptual assimilation of Dutch vowels by Peruvian Spanish listeners.

    Science.gov (United States)

    Escudero, Paola; Williams, Daniel

    2011-01-01

    Many cross-language and L2 speech perception studies have been conducted on English sounds and a limited number of speakers or synthetic tokens have been used for auditory stimuli. The Spanish listeners of the present study were presented with natural tokens of Dutch vowels produced by males and females selected from the corpus reported in Adank et al. [(2004) J. Acoust. Soc. Am. 116, 1729-1738]. The results show that single category assimilations are common and that certain Dutch vowels frequently assimilate to Spanish diphthongs. Predictions are made for Spanish learners' initial stage in the acquisition of the Dutch vowel system.

  10. What Can Data Assimilation Tell Us about Our Models?

    Science.gov (United States)

    Nearing, G. S.

    2015-12-01

    Data assimilation is a process of combining information from imperfect models and imperfect observations. To the extent that models used for data assimilation are probabilistic to account for epistemic uncertainty, we expect data assimilation to attenuate the effect of model errors on estimates of hydrologic states and fluxes. Intuitively, if data assimilation can mitigate model deficiencies, we would expect it to be informative of the nature of these deficiencies. We address two related questions. The first is about how to store information gained via data assimilation into the structure of the model so that this information is not lost outside the period of observation. We show the general (theoretical) strategy for storing this information, and propose a practical algorithm based on the EnFK. Doing this results in improved forecasts of energy and carbon fluxes from land surface models, as well as improved estimates of streamflow in a rainfall-runoff model. Storing information in a model structure is done purely by statistical analysis of DA innovations, and so provides no insight about the adequacy of model hypotheses. We show that this type of insight can be gained by measuring how data assimilation changes the way information moves within the model. By treating the model as an information processing system, we can visualize explicitly how assimilating observations changes strengths and time-scales of couplings between modeled variables. The insight is that measuring Shannon-type information fluxes instead of mass and energy fluxes allows us to relate any variable with any other at any time-scale. We produce a concise set of statistics that are easily interpreted and directly highlight how DA effectively changes the way that the model behaves. We applied these techniques to the Noah LSM after assimilating both in situ (FluxNet, SCAN) and remote sensing (AMSR-E, MODIS) observations. Results indicate that major deficiencies in the way that Noah translates

  11. HOW DO IMMIGRANTS SPEND THEIR TIME?: THE PROCESS OF ASSIMILATION.

    Science.gov (United States)

    Hamermesh, Daniel S; Trejo, Stephen J

    2013-04-01

    Sharp differences in time use by nativity emerge when activities are distinguished by incidence and intensity in recent U.S. data. A model with daily fixed costs for assimilating activities predicts immigrants are less likely than natives to undertake such activities on a given day; but those who do will spend relatively more time on them. Activities such as purchasing, education, and market work conform to the model. Other results suggest that fixed costs for assimilating activities are higher for immigrants with poor English proficiency or who originate in less developed countries. An analysis of comparable Australian data yields similar results.

  12. Data assimilation in the decision support system RODOS

    DEFF Research Database (Denmark)

    Rojas-Palma, C.; Madsen, H.; Gering, F.;

    2003-01-01

    Model predictions for a rapid assessment and prognosis of possible radiological consequences after an accidental release of radionuclides play an important role in nuclear emergency management. Radiological observations, e.g. dose rate measurements. can be used to improve such model predictions....... The process of combining model predictions and observations, usually referred to as data assimilation, is described in this article within the framework of the real time on-line decision support system (RODOS) for off-site nuclear emergency management in Europe. Data assimilation capabilities, based on Kalman...

  13. SMAP Data Assimilation at NASA SPoRT

    Science.gov (United States)

    Blankenship, Clay B.; Case, Jonathan L.; Zavodsky, Bradley T.

    2016-01-01

    The NASA Short-Term Prediction Research and Transition (SPoRT) Center maintains a near-real- time run of the Noah Land Surface Model within the Land Information System (LIS) at 3-km resolution. Soil moisture products from this model are used by several NOAA/National Weather Service Weather Forecast Offices for flood and drought situational awareness. We have implemented assimilation of soil moisture retrievals from the Soil Moisture Ocean Salinity (SMOS) and Soil Moisture Active/ Passive (SMAP) satellites, and are now evaluating the SMAP assimilation. The SMAP-enhanced LIS product is planned for public release by October 2016.

  14. [Assimilation test of Malassezia furfur isolated from the environment].

    Science.gov (United States)

    Tanaka, R; Nishimura, K; Kamei, K; Murayama, S Y

    2001-01-01

    The lipophilic yeasts Malassezia species are the causative agents of tinea versicolor and known also to be a member of normal skin flora. They are commonly isolated from the skin of humans and animals, but not from the environment. This is the first report of the isolation of Malassezia sp. from the environment (a hospital floor). The results of assimilation tests of lipids and karyotyping showed that these isolates were M. furfur. They assimilated not only lipids including floor wax and car wax but also some ointments (except antifungal agents) used clinically. The results suggest that we need to take care when using such ointments to treat skin diseases.

  15. Data assimilation as a nonlinear dynamical systems problem: stability and convergence of the prediction-assimilation system.

    Science.gov (United States)

    Carrassi, Alberto; Ghil, Michael; Trevisan, Anna; Uboldi, Francesco

    2008-06-01

    We study prediction-assimilation systems, which have become routine in meteorology and oceanography and are rapidly spreading to other areas of the geosciences and of continuum physics. The long-term, nonlinear stability of such a system leads to the uniqueness of its sequentially estimated solutions and is required for the convergence of these solutions to the system's true, chaotic evolution. The key ideas of our approach are illustrated for a linearized Lorenz system. Stability of two nonlinear prediction-assimilation systems from dynamic meteorology is studied next via the complete spectrum of their Lyapunov exponents; these two systems are governed by a large set of ordinary and of partial differential equations, respectively. The degree of data-induced stabilization is crucial for the performance of such a system. This degree, in turn, depends on two key ingredients: (i) the observational network, either fixed or data-adaptive, and (ii) the assimilation method.

  16. Coupled atmosphere and land-surface assimilation of surface observations with a single column model and ensemble data assimilation

    Science.gov (United States)

    Rostkier-Edelstein, Dorita; Hacker, Joshua P.; Snyder, Chris

    2014-05-01

    Numerical weather prediction and data assimilation models are composed of coupled atmosphere and land-surface (LS) components. If possible, the assimilation procedure should be coupled so that observed information in one module is used to correct fields in the coupled module. There have been some attempts in this direction using optimal interpolation, nudging and 2/3DVAR data assimilation techniques. Aside from satellite remote sensed observations, reference height in-situ observations of temperature and moisture have been used in these studies. Among other problems, difficulties in coupled atmosphere and LS assimilation arise as a result of the different time scales characteristic of each component and the unsteady correlation between these components under varying flow conditions. Ensemble data-assimilation techniques rely on flow dependent observations-model covariances. Provided that correlations and covariances between land and atmosphere can be adequately simulated and sampled, ensemble data assimilation should enable appropriate assimilation of observations simultaneously into the atmospheric and LS states. Our aim is to explore assimilation of reference height in-situ temperature and moisture observations into the coupled atmosphere-LS modules(simultaneously) in NCAR's WRF-ARW model using the NCAR's DART ensemble data-assimilation system. Observing system simulation experiments (OSSEs) are performed using the single column model (SCM) version of WRF. Numerical experiments during a warm season are centered on an atmospheric and soil column in the South Great Plains. Synthetic observations are derived from "truth" WRF-SCM runs for a given date,initialized and forced using North American Regional Reanalyses (NARR). WRF-SCM atmospheric and LS ensembles are created by mixing the atmospheric and soil NARR profile centered on a given date with that from another day (randomly chosen from the same season) with weights drawn from a logit-normal distribution. Three

  17. Comparative analysis of various real-time data assimilation approaches for assimilating streamflow into a hydrologic routing model

    Science.gov (United States)

    Noh, Seong Jin; Mazzoleni, Maurizio; Lee, Haksu; Liu, Yuqiong; Seo, Dong Jun; Solomatine, Dimitri

    2016-04-01

    Reliable water depth estimation is an extremely important issue in operational early flood warning systems. Different water system models have been implemented in the last decades, and, in parallel, data assimilation approaches have been introduced in order to reduce the uncertainty of such models. The goal of this study is to compare the performances of a distributed hydrologic routing model with streamflow assimilation using six different data assimilation methods, including direct insertion, nudging, Kalman filter, Ensemble Kalman filter, Asynchronous Ensemble Kalman filter and variational method. The model used in this study is a 3-parameter Muskingum (O'Donnell 1985) which was implemented in the Trinity River, within the Dallas-Fort-Worth Metroplex area in Texas, USA. The first methodological step is to discretize the river reach into multiple 1-km sub-reaches in order to estimate water depth in a distributed fashion. Then, different data assimilation approaches were implemented using the state-space approach formulation of the Muskingum model proposed by Georgakakos (1990). Finally, streamflow observations were assimilated at two points where flow sensors are located. The results of this work pointed out that assimilation of streamflow observations can noticeably improve the hydrologic routing model prediction and that ensemble definition is particularly important for both Ensemble Kalman filter and Asynchronous Ensemble Kalman filter. This study is part of the FP7 European Project WeSenseIt Citizen Water Observatory (www.http://wesenseit.eu/) and NSF Project Integrated Sensing and Prediction of urban Water for Sustainable Cities (http://ispuw.uta.edu/nsf)

  18. A parsimonious land data assimilation system for the SMAP/GPM satellite era

    Science.gov (United States)

    Land data assimilation systems typically require complex parameterizations in order to: define required observation operators, quantify observing/forecasting errors and calibrate a land surface assimilation model. These parameters are commonly defined in an arbitrary manner and, if poorly specified,...

  19. A primer for data assimilation with ecological models using Markov Chain Monte Carlo (MCMC).

    Science.gov (United States)

    Zobitz, J M; Desai, A R; Moore, D J P; Chadwick, M A

    2011-11-01

    Data assimilation, or the fusion of a mathematical model with ecological data, is rapidly expanding knowledge of ecological systems across multiple spatial and temporal scales. As the amount of ecological data available to a broader audience increases, quantitative proficiency with data assimilation tools and techniques will be an essential skill for ecological analysis in this data-rich era. We provide a data assimilation primer for the novice user by (1) reviewing data assimilation terminology and methodology, (2) showcasing a variety of data assimilation studies across the ecological, environmental, and atmospheric sciences with the aim of gaining an understanding of potential applications of data assimilation, and (3) applying data assimilation in specific ecological examples to determine the components of net ecosystem carbon uptake in a forest and also the population dynamics of the mayfly (Hexagenia limbata, Serville). The review and examples are then used to provide guiding principles to newly proficient data assimilation practitioners.

  20. Metabolic engineering of ammonium assimilation in xylose-fermenting Saccharomyes cerevisiae improves ethanol production

    DEFF Research Database (Denmark)

    Roca, Christophe Francois Aime; Nielsen, Jens; Olsson, Lisbeth

    2003-01-01

    Cofactor imbalance impedes xylose assimilation in Saccharomyces cerevisiae that has been metabolically engineered for xylose utilization. To improve cofactor use, we modified ammonia assimilation in recombinant S. cerevisiae by deleting GDH1, which encodes an NADPH-dependent glutamate dehydrogenase...

  1. An Operational Technology for Assimilating Lagrangian Data Based on Dynamical Systems Techniques

    Science.gov (United States)

    2016-06-07

    An Operational Technology for Assimilating Lagrangian Data Based on Dynamical Systems Techniques Christopher K. R. T. Jones Department of... technology for assimilating Lagrangian data. This new Lagrangian data assimilation platform is expected to be particularly effective in ocean regions where...COVERED 00-00-2006 to 00-00-2006 4. TITLE AND SUBTITLE An Operational Technology for Assimilating Lagrangian Data Based on Dynamical Systems

  2. Probability Maps for the Visualization of Assimilation Ensemble Flow Data

    KAUST Repository

    Hollt, Thomas

    2015-05-25

    Ocean forecasts nowadays are created by running ensemble simulations in combination with data assimilation techniques. Most of these techniques resample the ensemble members after each assimilation cycle. This means that in a time series, after resampling, every member can follow up on any of the members before resampling. Tracking behavior over time, such as all possible paths of a particle in an ensemble vector field, becomes very difficult, as the number of combinations rises exponentially with the number of assimilation cycles. In general a single possible path is not of interest but only the probabilities that any point in space might be reached by a particle at some point in time. In this work we present an approach using probability-weighted piecewise particle trajectories to allow such a mapping interactively, instead of tracing quadrillions of individual particles. We achieve interactive rates by binning the domain and splitting up the tracing process into the individual assimilation cycles, so that particles that fall into the same bin after a cycle can be treated as a single particle with a larger probability as input for the next time step. As a result we loose the possibility to track individual particles, but can create probability maps for any desired seed at interactive rates.

  3. A reduced adjoint approach to variational data assimilation

    KAUST Repository

    Altaf, Muhammad

    2013-02-01

    The adjoint method has been used very often for variational data assimilation. The computational cost to run the adjoint model often exceeds several original model runs and the method needs significant programming efforts to implement the adjoint model code. The work proposed here is variational data assimilation based on proper orthogonal decomposition (POD) which avoids the implementation of the adjoint of the tangent linear approximation of the original nonlinear model. An ensemble of the forward model simulations is used to determine the approximation of the covariance matrix and only the dominant eigenvectors of this matrix are used to define a model subspace. The adjoint of the tangent linear model is replaced by the reduced adjoint based on this reduced space. Thus the adjoint model is run in reduced space with negligible computational cost. Once the gradient is obtained in reduced space it is projected back in full space and the minimization process is carried in full space. In the paper the reduced adjoint approach to variational data assimilation is introduced. The characteristics and performance of the method are illustrated with a number of data assimilation experiments in a ground water subsurface contaminant model. © 2012 Elsevier B.V.

  4. Local ensemble assimilation scheme with global constraints and conservation

    Science.gov (United States)

    Barth, Alexander; Yan, Yajing; Alvera-Azcárate, Aida; Beckers, Jean-Marie

    2016-12-01

    Ensemble assimilation schemes applied in their original, global formulation respect linear conservation properties if the ensemble perturbations are set up accordingly. For realistic ocean systems, only a relatively small number of ensemble members can be calculated. A localization of the ensemble increment is therefore necessary to filter out spurious long-range correlations. The conservation of the global properties will be lost if the assimilation is performed locally, since the conservation requires a coupling between all model grid points which is removed by the localization. The distribution of ocean observations is often highly inhomogeneous. Systematic errors of the observed parts of the ocean state can lead to spurious adjustment of the non-observed parts via data assimilation and thus to a spurious increase or decrease in long-term simulations of global properties which should be conserved. In this paper, we propose a local assimilation scheme (with different variants and assumptions) which can satisfy global conservation properties. The proposed scheme can also be used for non-local observation operators. Different variants of the proposed scheme are tested in an idealized model and compared to the traditional covariance localization with an ad-hoc step enforcing conservation. It is shown that the inclusion of the conservation property reduces the total RMS error and that the presented stochastic and deterministic schemes avoiding error space rotation provide better results than the traditional covariance localization.

  5. New data assimilation system DNDAS for high-dimensional models

    Science.gov (United States)

    Qun-bo, Huang; Xiao-qun, Cao; Meng-bin, Zhu; Wei-min, Zhang; Bai-nian, Liu

    2016-05-01

    The tangent linear (TL) models and adjoint (AD) models have brought great difficulties for the development of variational data assimilation system. It might be impossible to develop them perfectly without great efforts, either by hand, or by automatic differentiation tools. In order to break these limitations, a new data assimilation system, dual-number data assimilation system (DNDAS), is designed based on the dual-number automatic differentiation principles. We investigate the performance of DNDAS with two different optimization schemes and subsequently give a discussion on whether DNDAS is appropriate for high-dimensional forecast models. The new data assimilation system can avoid the complicated reverse integration of the adjoint model, and it only needs the forward integration in the dual-number space to obtain the cost function and its gradient vector concurrently. To verify the correctness and effectiveness of DNDAS, we implemented DNDAS on a simple ordinary differential model and the Lorenz-63 model with different optimization methods. We then concentrate on the adaptability of DNDAS to the Lorenz-96 model with high-dimensional state variables. The results indicate that whether the system is simple or nonlinear, DNDAS can accurately reconstruct the initial condition for the forecast model and has a strong anti-noise characteristic. Given adequate computing resource, the quasi-Newton optimization method performs better than the conjugate gradient method in DNDAS. Project supported by the National Natural Science Foundation of China (Grant Nos. 41475094 and 41375113).

  6. Assimilating host model information into a limited area model

    Directory of Open Access Journals (Sweden)

    Nils Gustafsson

    2012-01-01

    Full Text Available We propose to add an extra source of information to the data-assimilation of the regional HIgh Resolution Limited Area Model (HIRLAM model, constraining larger scales to the host model providing the lateral boundary conditions. An extra term, Jk, measuring the distance to the large-scale vorticity of the host model, is added to the cost-function of the variational data-assimilation. Vorticity is chosen because it is a good representative of the large-scale flow and because vorticity is a basic control variable of the HIRLAM variational data-assimilation. Furthermore, by choosing only vorticity, the remaining model variables, divergence, temperature, surface pressure and specific humidity will be allowed to adapt to the modified vorticity field in accordance with the internal balance constraints of the regional model. The error characteristics of the Jk term are described by the horizontal spectral densities and the vertical eigenmodes (eigenvectors and eigenvalues of the host model vorticity forecast error fields, expressed in the regional model geometry. The vorticity field, provided by the European Centre for Medium-range Weather Forecasts (ECMWF operational model, was assimilated into the HIRLAM model during an experiment period of 33 d in winter with positive impact on forecast verification statistics for upper air variables and mean sea level pressure.The review process was handled by Editor-in-Cheif Harald Lejenäs

  7. Assimilation (in vitro) of cholesterol by yogurt bacteria.

    Science.gov (United States)

    Dilmi-Bouras, Abdelkader

    2006-01-01

    A considerable variation is noticed between the different species studied and even between the strains of the same species, in the assimilation of cholesterol in synthetic media, in presence of different concentrations of bile salts and under anaerobiosis conditions. The obtained results show that certain strains of Streptococcus thermophilus and Lactobacillus bulgaricus resist bile salts and assimilate appreciable cholesterol quantities in their presence. The study of associations shows that only strains assimilating cholesterol in a pure state remain active when they are put in associations, but there is no additional effect. However, the symbiotic effect between Streptococcus thermophilus and Lactobacillus bulgaricus of yogurt, with regard to bile salts, is confirmed. The lactic fermenters of yogurt (Y2) reduce the levels of total cholesterol, HDL-cholesterol and LDL-cholesterol, in a well-balanced way. In all cases, the assimilated quantity of HDL-cholesterol is lower than that of LDL-cholesterol. Moreover, yogurt Y2 keeps a significant number of bacteria, superior to 10(8) cells ml(-1), and has a good taste 10 days after its production.

  8. The Perception of Assimilation in Newly Learned Novel Words

    Science.gov (United States)

    Snoeren, Natalie D.; Gaskell, M. Gareth; Di Betta, Anna Maria

    2009-01-01

    The present study investigated the mechanisms underlying perceptual compensation for assimilation in novel words. During training, participants learned canonical versions of novel spoken words (e.g., "decibot") presented in isolation. Following exposure to a second set of novel words the next day, participants carried out a phoneme…

  9. Information Flow in an Atmospheric Model and Data Assimilation

    Science.gov (United States)

    Yoon, Young-noh

    2011-01-01

    Weather forecasting consists of two processes, model integration and analysis (data assimilation). During the model integration, the state estimate produced by the analysis evolves to the next cycle time according to the atmospheric model to become the background estimate. The analysis then produces a new state estimate by combining the background…

  10. Formate Assimilation: The Metabolic Architecture of Natural and Synthetic Pathways.

    Science.gov (United States)

    Bar-Even, Arren

    2016-07-19

    Formate may become an ideal mediator between the physicochemical and biological realms, as it can be produced efficiently from multiple available sources, such as electricity and biomass, and serve as one of the simplest organic compounds for providing both carbon and energy to living cells. However, limiting the realization of formate as a microbial feedstock is the low diversity of formate-fixing enzymes and thereby the small number of naturally occurring formate-assimilation pathways. Here, the natural enzymes and pathways supporting formate assimilation are presented and discussed together with proposed synthetic routes that could permit growth on formate via existing as well as novel formate-fixing reactions. By considering such synthetic routes, the diversity of metabolic solutions for formate assimilation can be expanded dramatically, such that different host organisms, cultivation conditions, and desired products could be matched with the most suitable pathway. Astute application of old and new formate-assimilation pathways may thus become a cornerstone in the development of sustainable strategies for microbial production of value-added chemicals.

  11. Voicing and Devoicing Assimilation of French /s/ and /z/

    Science.gov (United States)

    Abdelli-Beruh, Nassima B.

    2012-01-01

    The present acoustic-phonetic study explores whether voicing and devoicing assimilations of French fricatives are equivalent in magnitude and whether they operate similarly (i.e., complete vs. gradient, obligatory vs. optional, regressive vs. progressive). It concurrently assesses the contribution of speakers' articulation rate to the proportion…

  12. Anterior Cingulate Cortex in Schema Assimilation and Expression

    Science.gov (United States)

    Wang, Szu-Han; Tse, Dorothy; Morris, Richard G. M.

    2012-01-01

    In humans and in animals, mental schemas can store information within an associative framework that enables rapid and efficient assimilation of new information. Using a hippocampal-dependent paired-associate task, we now report that the anterior cingulate cortex is part of a neocortical network of schema storage with NMDA receptor-mediated…

  13. Coarse-grained sensitivity for multiscale data assimilation

    CERN Document Server

    Sugiura, Nozomi

    2015-01-01

    We show that the effective average action and its gradient are useful for solving multiscale data assimilation problems. We also present a procedure for numerically evaluating the gradient of the effective average action, and demonstrate that the variational problem for slow degrees of freedom can be solved properly using the "effective gradient."

  14. Data assimilation in integrated hydrological modeling using ensemble Kalman filtering

    DEFF Research Database (Denmark)

    Rasmussen, Jørn; Madsen, H.; Jensen, Karsten Høgh;

    2015-01-01

    Groundwater head and stream discharge is assimilated using the ensemble transform Kalman filter in an integrated hydrological model with the aim of studying the relationship between the filter performance and the ensemble size. In an attempt to reduce the required number of ensemble members...

  15. Normalization: Integration or Assimilation? A Response to Miquel Strubell.

    Science.gov (United States)

    Atkinson, David

    1998-01-01

    Responds to an article by Strubell, "Language, Democracy, and Devolution in Catalonia," focusing on the position of Castilian-speaking individuals resident and working in Catalonia. The paper notes that the policy of assimilating migrants is no longer accepted without question, and it suggests diglossia as the only way to provide…

  16. Abscisic acid and assimilate partitioning during seed development.

    NARCIS (Netherlands)

    Bruijn, de S.M.

    1993-01-01

    This thesis describes the influence of abscisic acid (ABA) on the transport of assimilates to seeds and the deposition of reserves in seeds. It is well-known from literature that ABA accumulates in seeds during development, and that ABA concentrations in seeds correlate rather well with seed size an

  17. Global Isotope Metabolomics Reveals Adaptive Strategies for Nitrogen Assimilation.

    Science.gov (United States)

    Kurczy, Michael E; Forsberg, Erica M; Thorgersen, Michael P; Poole, Farris L; Benton, H Paul; Ivanisevic, Julijana; Tran, Minerva L; Wall, Judy D; Elias, Dwayne A; Adams, Michael W W; Siuzdak, Gary

    2016-06-17

    Nitrogen cycling is a microbial metabolic process essential for global ecological/agricultural balance. To investigate the link between the well-established ammonium and the alternative nitrate assimilation metabolic pathways, global isotope metabolomics was employed to examine three nitrate reducing bacteria using (15)NO3 as a nitrogen source. In contrast to a control (Pseudomonas stutzeri RCH2), the results show that two of the isolates from Oak Ridge, Tennessee (Pseudomonas N2A2 and N2E2) utilize nitrate and ammonia for assimilation concurrently with differential labeling observed across multiple classes of metabolites including amino acids and nucleotides. The data reveal that the N2A2 and N2E2 strains conserve nitrogen-containing metabolites, indicating that the nitrate assimilation pathway is a conservation mechanism for the assimilation of nitrogen. Co-utilization of nitrate and ammonia is likely an adaption to manage higher levels of nitrite since the denitrification pathways utilized by the N2A2 and N2E2 strains from the Oak Ridge site are predisposed to the accumulation of the toxic nitrite. The use of global isotope metabolomics allowed for this adaptive strategy to be investigated, which would otherwise not have been possible to decipher.

  18. The optimality of potential rescaling approaches in land data assimilation

    Science.gov (United States)

    It is well-known that systematic differences exist between modeled and observed realizations of hydrological variables like soil moisture. Prior to data assimilation, these differences must be removed in order to obtain an optimal analysis. A number of rescaling approaches have been proposed for rem...

  19. Economic Assimilation and Outmigration of Immigrants in West-Germany

    NARCIS (Netherlands)

    Bellemare, C.

    2003-01-01

    By analyzing earnings of observed immigrants workers, the literature on the economic assimilation of immigrants has generally overlooked two potentially important selectivity issues.First, earnings of immigrant workers may di¿er substantially from those of non-workers.Second, earnings of immigrants

  20. Dependence of brightness and darkness assimilation on transparency conditions

    NARCIS (Netherlands)

    Weert, C.M.M. de; Koning, A.R.; Lier, R.J. van

    2004-01-01

    We investigated the dependence of assimilation effects that underlie differences in perceived brightness of two equiluminant shapes. The stimulus consisted of two juxtaposed shapes: an oblong shape and a rectangle, both of which had their elongated axis oriented vertically. In addition, the oblong s

  1. Advances in Data Assimilation for Operational Hydrologic Forecasting

    Science.gov (United States)

    Weerts, Albrecht; Liu, Yuqiong

    2011-02-01

    International Workshop on Data Assimilation for Operational Hydrologic Forecasting and Water Resources Management; Delft, Netherlands, 1-3 November 2010 ; The abundance of new hydrologic observations (in situ or remotely sensed) in the past couple of decades has stimulated a great deal of research into the use of these observations for improved hydrologic predictions via model-data infusion applications. Generally speaking, however, hydrologic data assimilation (DA) as an objective tool for reducing predictive uncertainty is not yet technically ready for operational hydrologic forecasting and water resources management. This is due in part to a lack of mechanisms to properly quantify the uncertainty in observations and forecast models in real-time forecasting situations and to conduct the merging of data and models in a way that is adequately efficient and transparent to operational forecasters. Nevertheless, the need for effective assimilation of useful data into the forecast process is increasing. Within the framework of the Hydrologic Ensemble Prediction Experiment (HEPEX; http://www.hepex.org/), a workshop was held in the Netherlands. The overall goal of the workshop was to develop and foster community-based efforts for collaborative research, development, and synthesis of techniques and tools for hydrologic data assimilation and for the cost-effective transition of these techniques and tools from research to operations.

  2. Plant growth, assimilation,and development: a conceptual framework

    Energy Technology Data Exchange (ETDEWEB)

    Lockhart, J.A.

    1976-05-01

    Formulations are presented which describe the energy and material balances of plants in order to describe and interrelate more completely and clearly the various plant processes and physiological and ecological questions. The general relationship developed is Assimilation rate = Growth rate + Storage rate + Loss rate. This fundamental relationship is then used to examine seasonal changes, growth, and differentiation. 11 references, 4 tables.

  3. Beyond Integrative Motivation: The Development and Influence of Assimilative Motivation.

    Science.gov (United States)

    Graham, C. Ray

    Research suggests that assimilative motivation is largely responsible for the development of native-like speech in both first and second languages. Analysis of anecdotal evidence of early bilingual development, studies of dialect acquisition, bilingual immersion programs, and studies of language pidginization illustrating the development of…

  4. The auto-tuned land data assimilation system (ATLAS)

    Science.gov (United States)

    Land data assimilation systems are tasked with the merging remotely-sensed soil moisture retrievals with information derived from a soil water balance model driven (principally) by observed rainfall. The performance of such systems is frequently degraded by the imprecise specification of parameters ...

  5. Assimilation Ideology: Critically Examining Underlying Messages in Multicultural Literature

    Science.gov (United States)

    Yoon, Bogum; Simpson, Anne; Haag, Claudia

    2010-01-01

    Using the framework of multicultural education, this article presents an analysis of multicultural picture books that depict the features of assimilation ideology. The findings suggest that assimilationist ideas are presented through the main characters' identities in the resolution of the story and through the portrayal of a glorified dominant…

  6. Gradient Evolution of Body Colouration in Surface- and Cave-Dwelling Poecilia mexicana and the Role of Phenotype-Assortative Female Mate Choice

    Directory of Open Access Journals (Sweden)

    David Bierbach

    2013-01-01

    Full Text Available Ecological speciation assumes reproductive isolation to be the product of ecologically based divergent selection. Beside natural selection, sexual selection via phenotype-assortative mating is thought to promote reproductive isolation. Using the neotropical fish Poecilia mexicana from a system that has been described to undergo incipient ecological speciation in adjacent, but ecologically divergent habitats characterized by the presence or absence of toxic H2S and darkness in cave habitats, we demonstrate a gradual change in male body colouration along the gradient of light/darkness, including a reduction of ornaments that are under both inter- and intrasexual selection in surface populations. In dichotomous choice tests using video-animated stimuli, we found surface females to prefer males from their own population over the cave phenotype. However, female cave fish, observed on site via infrared techniques, preferred to associate with surface males rather than size-matched cave males, likely reflecting the female preference for better-nourished (in this case: surface males. Hence, divergent selection on body colouration indeed translates into phenotype-assortative mating in the surface ecotype, by selecting against potential migrant males. Female cave fish, by contrast, do not have a preference for the resident male phenotype, identifying natural selection against migrants imposed by the cave environment as the major driver of the observed reproductive isolation.

  7. Gaia Assorted Mass Binaries Long Excluded from SLoWPoKES (GAMBLES): Identifying Wide Binary Pairs with Components of Diverse Mass

    CERN Document Server

    Oelkers, Ryan J; Dhital, Saurav

    2016-01-01

    Despite the maturity of stellar astrophysics, the formation and evolution of binary star systems still remain key questions in modern astronomy. Wide binary pairs (separations >10^3 AU) are particularly intriguing because their low binding energies makes it difficult for the stars to stay gravitationally bound over extended timescales. The SLoWPoKES I & II catalogs provided the largest and most complete sample of low-mass, wide binary pairs, creating a testbed for the formation and evolution scenarios of multiple star systems. We present an extension of these catalogs, the Gaia Assorted Mass Binaries Long Excluded from SloWPoKES (GAMBLES). This catalog identifies 1,887 candidate binary pairs, of assorted mass, with typical separations between 10^3-10^5.5 AU (0.002-1.5 pc) using the published distances and proper motions from the Tycho-Gaia Astrometric Solution and Sloan Digital Sky Survey photometry. We find each pair to have, at most, a false positive probability of 0.05 and therefore a total expectation...

  8. Gradient evolution of body colouration in surface- and cave-dwelling Poecilia mexicana and the role of phenotype-assortative female mate choice.

    Science.gov (United States)

    Bierbach, David; Penshorn, Marina; Hamfler, Sybille; Herbert, Denise B; Appel, Jessica; Meyer, Philipp; Slattery, Patrick; Charaf, Sarah; Wolf, Raoul; Völker, Johannes; Berger, Elisabeth A M; Dröge, Janis; Wolf, Konstantin; Riesch, Rüdiger; Arias-Rodriguez, Lenin; Indy, Jeanne R; Plath, Martin

    2013-01-01

    Ecological speciation assumes reproductive isolation to be the product of ecologically based divergent selection. Beside natural selection, sexual selection via phenotype-assortative mating is thought to promote reproductive isolation. Using the neotropical fish Poecilia mexicana from a system that has been described to undergo incipient ecological speciation in adjacent, but ecologically divergent habitats characterized by the presence or absence of toxic H2S and darkness in cave habitats, we demonstrate a gradual change in male body colouration along the gradient of light/darkness, including a reduction of ornaments that are under both inter- and intrasexual selection in surface populations. In dichotomous choice tests using video-animated stimuli, we found surface females to prefer males from their own population over the cave phenotype. However, female cave fish, observed on site via infrared techniques, preferred to associate with surface males rather than size-matched cave males, likely reflecting the female preference for better-nourished (in this case: surface) males. Hence, divergent selection on body colouration indeed translates into phenotype-assortative mating in the surface ecotype, by selecting against potential migrant males. Female cave fish, by contrast, do not have a preference for the resident male phenotype, identifying natural selection against migrants imposed by the cave environment as the major driver of the observed reproductive isolation.

  9. Soil Moisture Data Assimilation in Soil Water Flow Modeling

    Science.gov (United States)

    Pachepsky, Y. A.; Guber, A.; Jacques, D.; Pan, F.; van Genuchten, M.; Cady, R. E.; Nicholson, T. J.

    2010-12-01

    Soil water flow modeling has multiple applications. This modeling is based on simplifications stemming from both conceptual uncertainty and lack of detailed knowledge about parameters. Modern soil moisture sensors can provide detailed information about changes in soil water content in time and with depth. This information can be used for data assimilation in soil water flow modeling. The ensemble Kalman filter appears to be an appropriate method for that. Earlier we demonstrated ensemble simulations of soil water flow by using sets of pedotransfer functions (empirical relationships between soil hydraulic properties and soil basic properties, such as particle size distribution, bulk density, organic carbon content, etc.). The objective of this work was to apply the data assimilation with the ensemble Kalman filter to soil water flow modeling, using soil water content monitoring with TDR probes and an ensemble of soil water flow models parameterized with different pedotransfer functions. Experiments were carried out at the Bekkevoort site, Belgium. Sixty time domain reflectometry (TDR) probes with two rods) were installed along the trench in loamy soil at 12 locations with 50-cm horizontal spacing at five depths (15, 35, 55, 75, and 95 cm). Water content and weather parameters were monitored for one year with 15 min frequency. Soil water flow was simulated using the HYDRUS6 software. Mean daily means of water contents at the observation depths were the measurements used in data assimilation. Eighteen pedotransfer functions for water retention and one for hydraulic conductivity were applied to generate ensembles to evaluate the uncertainty in simulation results, whereas the replicated measurements at each of measurement depths were used to characterize the uncertainty in data. Data assimilation appeared to be very efficient. Even assimilating measurements at a single depth provided substantial improvement in simulations at other observation depths. Results on

  10. Improving Forecast Skill by Assimilation of AIRS Temperature Soundings

    Science.gov (United States)

    Susskind, Joel; Reale, Oreste

    2010-01-01

    AIRS was launched on EOS Aqua on May 4, 2002, together with AMSU-A and HSB, to form a next generation polar orbiting infrared and microwave atmospheric sounding system. The primary products of AIRS/AMSU-A are twice daily global fields of atmospheric temperature-humidity profiles, ozone profiles, sea/land surface skin temperature, and cloud related parameters including OLR. The AIRS Version 5 retrieval algorithm, is now being used operationally at the Goddard DISC in the routine generation of geophysical parameters derived from AIRS/AMSU data. A major innovation in Version 5 is the ability to generate case-by-case level-by-level error estimates delta T(p) for retrieved quantities and the use of these error estimates for Quality Control. We conducted a number of data assimilation experiments using the NASA GEOS-5 Data Assimilation System as a step toward finding an optimum balance of spatial coverage and sounding accuracy with regard to improving forecast skill. The model was run at a horizontal resolution of 0.5 deg. latitude X 0.67 deg longitude with 72 vertical levels. These experiments were run during four different seasons, each using a different year. The AIRS temperature profiles were presented to the GEOS-5 analysis as rawinsonde profiles, and the profile error estimates delta (p) were used as the uncertainty for each measurement in the data assimilation process. We compared forecasts analyses generated from the analyses done by assimilation of AIRS temperature profiles with three different sets of thresholds; Standard, Medium, and Tight. Assimilation of Quality Controlled AIRS temperature profiles significantly improve 5-7 day forecast skill compared to that obtained without the benefit of AIRS data in all of the cases studied. In addition, assimilation of Quality Controlled AIRS temperature soundings performs better than assimilation of AIRS observed radiances. Based on the experiments shown, Tight Quality Control of AIRS temperature profile performs best

  11. Better constraints on the sea-ice state using global sea-ice data assimilation

    Directory of Open Access Journals (Sweden)

    P. Mathiot

    2012-06-01

    Full Text Available Short-term and decadal sea-ice prediction systems need a realistic initial state, generally obtained using ice-ocean model simulations with data assimilation. However, only sea-ice concentration and velocity data are currently assimilated. In this work, an Ensemble Kalman Filter system is used to assimilate observed ice concentration and freeboard (i.e. thickness of emerged sea ice data into a global coupled ocean–sea-ice model. The impact and effectiveness of our data assimilation system is assessed in two steps: firstly, through the assimilation of synthetic data (i.e., model-generated data and, secondly, through the assimilation of satellite data. While ice concentrations are available daily, freeboard data used in this study are only available during six one-month periods spread over 2005–2007. Our results show that the simulated Arctic and Antarctic sea-ice extents are improved by the assimilation of synthetic ice concentration data. Assimilation of synthetic ice freeboard data improves the simulated sea-ice thickness field. Using real ice concentration data enhances the model realism in both hemispheres. Assimilation of ice concentration data significantly improves the total hemispheric sea-ice extent all year long, especially in summer. Combining the assimilation of ice freeboard and concentration data leads to better ice thickness, but does not further improve the ice extent. Moreover, the improvements in sea-ice thickness due to the assimilation of ice freeboard remain visible well beyond the assimilation periods.

  12. Impact of data assimilation on high-resolution rainfall forecasts: A spatial, seasonal, and category analysis

    Science.gov (United States)

    V, Rakesh; Goswami, Prashant

    2015-01-01

    a limited area model (LAM), the impact of data assimilation is likely to depend on the background state through lateral boundary forcing; this may introduce certain seasonality in the impact of data assimilation on rainfall forecasting. It is also likely that the impact of data assimilation on forecasts will have certain spatial variability. Finally, owing to the convective nature of rainfall and the roles of parameterization scheme, the impact of data assimilation may depend on the category (intensity) of rainfall. Here these aspects for rainfall forecasts at high resolution were examined. Using a LAM (An advanced version of Weather Research and Forecasting Model), we have carried out twin simulations with and without data assimilation; the simulations without data assimilation are used as the benchmark for assessing the impact of data assimilation. Analysis of simulations for 40 sample days distributed over the years 2012-2014 over Karnataka (southern state in India) is carried out to estimate impact of data assimilation. Various statistical measures show that data assimilation improved the rainfall prediction in most cases; however, there is also strong seasonality and location dependence in impact of data assimilation. Our results also show that improvement due to data assimilation is higher/lower for lower/higher rainfall categories. Analysis shows that the cases where the initial states with data assimilation depart strongly from the first guess generally result in less or even negative impact. It is pointed out that the results have important implications in design of observation system and assessment of impact of forecasts.

  13. Snow multivariable data assimilation for hydrological predictions in mountain areas

    Science.gov (United States)

    Piazzi, Gaia; Campo, Lorenzo; Gabellani, Simone; Rudari, Roberto; Castelli, Fabio; Cremonese, Edoardo; Morra di Cella, Umberto; Stevenin, Hervé; Ratto, Sara Maria

    2016-04-01

    The seasonal presence of snow on alpine catchments strongly impacts both surface energy balance and water resource. Thus, the knowledge of the snowpack dynamics is of critical importance for several applications, such as water resource management, floods prediction and hydroelectric power production. Several independent data sources provide information about snowpack state: ground-based measurements, satellite data and physical models. Although all these data types are reliable, each of them is affected by specific flaws and errors (respectively dependency on local conditions, sensor biases and limitations, initialization and poor quality forcing data). Moreover, there are physical factors that make an exhaustive reconstruction of snow dynamics complicated: snow intermittence in space and time, stratification and slow phenomena like metamorphism processes, uncertainty in snowfall evaluation, wind transportation, etc. Data Assimilation (DA) techniques provide an objective methodology to combine observational and modeled information to obtain the most likely estimate of snowpack state. Indeed, by combining all the available sources of information, the implementation of DA schemes can quantify and reduce the uncertainties of the estimations. This study presents SMASH (Snow Multidata Assimilation System for Hydrology), a multi-layer snow dynamic model, strengthened by a robust multivariable data assimilation algorithm. The model is physically based on mass and energy balances and can be used to reproduce the main physical processes occurring within the snowpack: accumulation, density dynamics, melting, sublimation, radiative balance, heat and mass exchanges. The model is driven by observed forcing meteorological data (air temperature, wind velocity, relative air humidity, precipitation and incident solar radiation) to provide a complete estimate of snowpack state. The implementation of an Ensemble Kalman Filter (EnKF) scheme enables to assimilate simultaneously ground

  14. Assimilation and contrast in the phonetic perception of vowels.

    Science.gov (United States)

    Shigeno, S

    1991-07-01

    The perceptual mechanisms of assimilation and contrast in the phonetic perception of vowels were investigated. In experiment 1, 14 stimulus continua were generated using an /i/-/e/-/a/ vowel continuum. They ranged from a continuum with both ends belonging to the same phonemic category in Japanese, to a continuum with both ends belonging to different phonemic categories. The AXB method was employed and the temporal position of X was changed under three conditions. In each condition ten subjects were required to judge whether X was similar to A or to B. The results demonstrated that assimilation to the temporally closer sound occurs if the phonemic categories of A and B are the same and that contrast to the temporally closer sound occurs if A and B belong to different phonemic categories. It was observed that the transition from assimilation to contrast is continuous except in the /i'/-X-/e/ condition. In experiment 2, the total duration of t 1 (between A and X) and t 2 (between X and B) was changed under five conditions. One stimulus continuum consisted of the same phonemic category in Japanese and the other consisted of different phonemic categories. Six subjects were required to make similarity judgements of X. The results demonstrated that the occurrence of assimilation and contrast to the temporally closer sound seemed to be constant under each of the five conditions. The present findings suggest that assimilation and contrast are determined by three factors: the temporal position of the three stimuli, the acoustic distance between the three stimuli on the stimulus continuum, and the phonemic categories of the three stimuli.

  15. ASSIMILATION OF COARSE-SCALEDATAUSINGTHE ENSEMBLE KALMAN FILTER

    KAUST Repository

    Efendiev, Yalchin

    2011-01-01

    Reservoir data is usually scale dependent and exhibits multiscale features. In this paper we use the ensemble Kalman filter (EnKF) to integrate data at different spatial scales for estimating reservoir fine-scale characteristics. Relationships between the various scales is modeled via upscaling techniques. We propose two versions of the EnKF to assimilate the multiscale data, (i) where all the data are assimilated together and (ii) the data are assimilated sequentially in batches. Ensemble members obtained after assimilating one set of data are used as a prior to assimilate the next set of data. Both of these versions are easily implementable with any other upscaling which links the fine to the coarse scales. The numerical results with different methods are presented in a twin experiment setup using a two-dimensional, two-phase (oil and water) flow model. Results are shown with coarse-scale permeability and coarse-scale saturation data. They indicate that additional data provides better fine-scale estimates and fractional flow predictions. We observed that the two versions of the EnKF differed in their estimates when coarse-scale permeability is provided, whereas their results are similar when coarse-scale saturation is used. This behavior is thought to be due to the nonlinearity of the upscaling operator in the case of the former data. We also tested our procedures with various precisions of the coarse-scale data to account for the inexact relationship between the fine and coarse scale data. As expected, the results show that higher precision in the coarse-scale data yielded improved estimates. With better coarse-scale modeling and inversion techniques as more data at multiple coarse scales is made available, the proposed modification to the EnKF could be relevant in future studies.

  16. The Impact of "Bad" Argo Profiles on Ocean Data Assimilation

    Institute of Scientific and Technical Information of China (English)

    YAN Chang-Xiang; ZHU Jiang

    2010-01-01

    Recent studies have found cold biases in a fraction of Argo profiles (hereinafter referred to as bad Array for Real-time Geostrophic Oceanography (Argo) profiles) due to the pressure drifts during 2003 and 2006. These bad Argo profiles have had an important impact on in situ observation-based global ocean heat content estimates. This study investigated the impact of bad Argo profiles on ocean data assimilation results that were based on observations from diverse ocean observation systems, such as in situ profiles (e.g., Argo, expendable bathythermograph (XBT), and Tropical Atmosphere Ocean (TAO), remote-sensing sea surface temperature products and satellite altimetry between 2004 and 2006. Results from this work show that the upper ocean heat content analysis is vulnerable to bad Argo profiles and demonstrate a cooling trend in the studied period despite the multiple independent data types that were assimilated. When the bad Argo profiles were excluded from the assimilation, the decreased heat content disappeared and a warming occurred. Combination of satellite altimetry and mass variation data from gravity satellite demonstrated an increase, which agrees well with the increased heat content. Additionally, when an additional Argo profile quality control procedure was utilized that simply removed the profiles that presented static unstable water columns, the results were very similar to those obtained when the bad Argo profiles were excluded from the assimilation. This indicates that an ocean data assimilation that uses multiple data sources with improved quality control could be less vulnerable to a major observation system failure, such as a bad Argo event.

  17. Ionospheric Data Assimilation from a Data Provider's Perspective

    Science.gov (United States)

    Schaefer, R. K.; Paxton, L. J.; Bust, G.; Zhang, Y.; Romeo, G.; Comberiate, J.; Gelinas, L. J.

    2014-12-01

    The Ionosphere/Thermosphere system is a very dynamic and complex medium to model. Given sufficient data and proper data handling, assimilative models can give a good representation of this system. One good dataset for this purpose comes from UV imagers on spacecraft. In particular, the Oxygen recombination emission (135.6 nm) and the Nitrogen Lyman-Birge Hopfield band (both 140-150 nm and 165-180 nm) are being collected by instruments on the NASA TIMED/GUVI and DMSP/SSUSI instruments. Similar UV data will also be available in the future from the ICON and GOLD missions. Currently, the Air Force is using the oxygen emission to infer ionospheric electron densities in the USU GAIM model for ionospheric forecasts. We have also been integrating data for the IDA4D model assimilation (Bust et al, 2007). As the data product designer for these UV products, we have an unique perspective on issues related to assimilating this data. These issues concern model resolution scales (Schunk, et al, 2011), filtering of noisy data, and handling of second order effects. We will discuss our experience with these issues and point out some future directions for assimilation of UV data. Bust, G., Crowley, G., Curtis, N., Reynolds, A., Paxton, L., Coker, C., Bernhardt, P. "IDA4D - a new ionospheric imaging algorithm using non-linear ground-based and spaced- based data sources", American Geophysical Union, Fall Meeting 2007, abstract #SA11B-06. Schunk, R.W., Scherliess, L., and Thompson, D.C., 2011 "Ionospheric Data Assimilation: Problems Associated with Missing Physics", Aeronomy of the Earth's Atmosphere and Ionosphere. IAGA Special Sopron Book Series Volume 2, pp 437-442.

  18. Satellite data assimilation in global forecast system in India

    Science.gov (United States)

    Basu, Swati

    2014-11-01

    Satellite data is very important for model initialization and verification. A large number of satellite observations are currently assimilated into the Numerical Weather Prediction (NWP) systems at the National Centre for Medium Range Weather Forecasting (NCMRWF). Apart from Global meteorological observations from GTS, near-real time satellite observations are received at NCMRWF from other operational centres like ISRO, NOAA/NESDIS, EUMETCAST, etc. Recently India has become member of Asia-Pacific Regional ATOVS Retransmission Service (APRARS) for faster access to high resolution global satellite data useful for high resolution regional models. Indian HRPT at Chennai covers the APRARS data gap region over South East Asia. A robust data monitoring system has been implemented at NCMRWF to assess the quantity and quality of the data as well as the satellite sensor strength, before getting assimilated in the models. Validation of new satellite observations, especially from Indian satellites are being carried out against insitu observations and similar space borne platforms. After establishing the quality of the data, Observation System Experiments (OSEs) are being conducted to study their impact in the assimilation and forecast systems. OSEs have been carried out with the Oceansat-2 scatterometer winds and radiance data from Megha-Tropiques SAPHIR sensor. Daily rainfall analysis dataset is being generated by merging satellite estimates and in-situ observations. ASCAT soil wetness measurements from METOP satellite is being assimilated into the global model. Land surface parameters (LuLc and albedo) retrieved from Indian satellites are being explored for its possible usage in the global and regional models. OLR from Indian satellites are used for validating model outputs. This paper reviews the efforts made at NCMRWF in (i) assimilating the data from Indian/International satellites and (ii) generating useful products from the satellite data.

  19. Assortment Structure, Prior Knowledge and Brand Choice%商品陈列方式、先验品牌知识与品牌选择决策--弱势品牌的视角

    Institute of Scientific and Technical Information of China (English)

    黄赞; 王新新

    2015-01-01

    Consumers tend to have a higher evaluation and purchase intention toward the products with stronger brands. Compared to foreign products, Chinese alternatives usually occupy a weaker brand position. Hence, Chinese manufacturers who want to increase market share commonly adopt a low-price strategy. However, such strategy may greatly weaken the organization’s ability to gain profits and undermine its long-term development. Moreover, low price is likely to be used by consumers as a signal of poor quality of the products. Therefore, it is important for Chinese manufacturers with weak brands to adopt new competitive strategies. The purpose of this study was to examine how assortment structure affects consumer’s brand choice. The key hypothesis was that the manufacturers with weaker brands, rather than stronger ones, could optimize the assortment structure to affect consumers’ brand choice in a retail environment. We conducted three empirical studies to test our hypotheses. In Study 1, we conducted three separated experiments to examine the impact of the assortment structure on consumers’ perceived variety of products. In particular, Study 1a explored the main effect of the assortment structure (attribute-based vs. benefit-based) on consumers’ perceived variety. Then, studies 1b and 1c composed a Chain-of-Experiments and tested the intermediate mechanism of the construal level in the causal relationship between the assortment structure and consumers’ perceived variety: Study 1b examined the impact of assortment structure on consumers’ construal level, and Study 1c tested the impact of the construal level on consumers’ perceived variety. Study 2 investigated the causal relationship between the assortment structure and consumers’ brand choice. Studies 1 and 2 adopted a one-way between-subject design. Study 3 explored the moderating effect of consumers’ prior knowledge of brand strength in the causal relationship and used a 2 (attribute-based vs. benefit

  20. Assimilation of Geosat Altimetric Data in a Nonlinear Shallow-Water Model of the Indian Ocean by Adjoint Approach. Part II: Some Validation and Interpretation of the Assimilated Results. Part 2; Some Validation and Interpretation of the Assimilated Results

    Science.gov (United States)

    Greiner, Eric; Perigaud, Claire

    1996-01-01

    This paper examines the results of assimilating Geosat sea level variations relative to the November 1986-November 1988 mean reference, in a nonlinear reduced-gravity model of the Indian Ocean, Data have been assimilated during one year starting in November 1986 with the objective of optimizing the initial conditions and the yearly averaged reference surface. The thermocline slope simulated by the model with or without assimilation is validated by comparison with the signal, which can be derived from expandable bathythermograph measurements performed in the Indian Ocean at that time. The topography simulated with assimilation on November 1986 is in very good agreement with the hydrographic data. The slopes corresponding to the South Equatorial Current and to the South Equatorial Countercurrent are better reproduced with assimilation than without during the first nine months. The whole circulation of the cyclonic gyre south of the equator is then strongly intensified by assimilation. Another assimilation experiment is run over the following year starting in November 1987. The difference between the two yearly mean surfaces simulated with assimilation is in excellent agreement with Geosat. In the southeastern Indian Ocean, the correction to the yearly mean dynamic topography due to assimilation over the second year is negatively correlated to the one the year before. This correction is also in agreement with hydrographic data. It is likely that the signal corrected by assimilation is not only due to wind error, because simulations driven by various wind forcings present the same features over the two years. Model simulations run with a prescribed throughflow transport anomaly indicate that assimilation is rather correcting in the interior of the model domain for inadequate boundary conditions with the Pacific.

  1. Assimilation of Dual-Polarimetric Radar Observations with WRF GSI

    Science.gov (United States)

    Li, Xuanli; Mecikalski, John; Fehnel, Traci; Zavodsky, Bradley; Srikishen, Jayanthi

    2014-01-01

    Dual-polarimetric (dual-pol) radar typically transmits both horizontally and vertically polarized radio wave pulses. From the two different reflected power returns, more accurate estimate of liquid and solid cloud and precipitation can be provided. The upgrade of the traditional NWS WSR-88D radar to include dual-pol capabilities will soon be completed for the entire NEXRAD network. Therefore, the use of dual-pol radar network will have a broad impact in both research and operational communities. The assimilation of dual-pol radar data is especially challenging as few guidelines have been provided by previous research. It is our goal to examine how to best use dual-pol radar data to improve forecast of severe storm and forecast initialization. In recent years, the Development Testbed Center (DTC) has released the community Gridpoint Statistical Interpolation (GSI) DA system for the Weather Research and Forecasting (WRF) model. The community GSI system runs in independently environment, yet works functionally equivalent to operational centers. With collaboration with the NASA Short-term Prediction Research and Transition (SPoRT) Center, this study explores regional assimilation of the dual-pol radar variables from the WSR-88D radars for real case storms. Our presentation will highlight our recent effort on incorporating the horizontal reflectivity (ZH), differential reflectivity (ZDR), specific differential phase (KDP), and radial velocity (VR) data for initializing convective storms, with a significant focus being on an improved representation of hydrometeor fields. In addition, discussion will be provided on the development of enhanced assimilation procedures in the GSI system with respect to dual-pol variables. Beyond the dual-pol variable assimilation procedure developing within a GSI framework, highresolution (=1 km) WRF model simulations and storm scale data assimilation experiments will be examined, emphasizing both model initialization and short-term forecast

  2. Lagrangian Displacement Ensembles for Aerosol Data Assimilation (Invited)

    Science.gov (United States)

    da Silva, A.; Colarco, P. R.; Govindaraju, R. C.

    2010-12-01

    A challenge common to many constituent data assimilation applications is the fact that one observes a much smaller fraction of the phase space that one wishes to estimate. For example, remotely-sensed estimates of the column average concentrations are available, while one is faced with the problem of estimating 3D concentractions for initializing a prognostic model. This problem is exarcebated in the the case of aerosols because the observable Aerosol Optical Depth (AOD) is not only a column integrated quantity, but it also sums over a large number of species (dust, sea-salt, carbonaceous and sulfate aerosols). An aerosol transport model when driven by high-resolution, state-of-the-art analysis of meterorological fields and realistc emissions can produce skillful forecasts even when no aerosol data is assimilated. The main task of aerosol data assimilation is to address the bias arising from innacurate emissions, and the Lagrangian misplacement of plumes induced by errors in the driving meterorological fields. As long as one decouples the meteorological and aerosol assimilation as we do here, the classic baroclinic growth of errors is no longer the main order of business. We will describe and aerosol data assimilation scheme in which the anaysis update step is conducted in observation space, using an adaptive maximum-likelihood scheme for estimating background errors in AOD space. This scheme includes explicit sequential bias estimation as in Dee and da Silva (1998). Unlikely existing aerosol data assimiltion schemes we do not obtain analysis increments of the 3D concentrations by scalling the background profiles. Instead, we explore the Langrangian characteristics of the problem for generating local displacement ensembles. These high-resolution, state-dependent ensembles are then used to parameterize the background errors and generate 3D aerosol increments. The algorithm has computational complexity comparable to the forecasting step by the aerosol transport model

  3. AMSR2 all-sky radiance assimilation and its impact on the analysis and forecast of Hurricane Sandy with a limited-area data assimilation system

    Directory of Open Access Journals (Sweden)

    Chun Yang

    2016-06-01

    Full Text Available A method to assimilate all-sky radiances from the Advanced Microwave Scanning Radiometer 2 (AMSR2 was developed within the Weather Research and Forecasting (WRF model's data assimilation (WRFDA system. The four essential elements are: (1 extending the community radiative transform model's (CRTM interface to include hydrometeor profiles; (2 using total water Qt as the moisture control variable; (3 using a warm-rain physics scheme for partitioning the Qt increment into individual increments of water vapour, cloud liquid water and rain; and (4 adopting a symmetric observation error model for all-sky radiance assimilation.Compared to a benchmark experiment with no AMSR2 data, the impact of assimilating clear-sky or all-sky AMSR2 radiances on the analysis and forecast of Hurricane Sandy (2012 was assessed through analysis/forecast cycling experiments using WRF and WRFDA's three-dimensional variational (3DVAR data assimilation scheme. With more cloud/precipitation-affected data being assimilated around tropical cyclone (TC core areas in the all-sky AMSR2 assimilation experiment, better analyses were obtained in terms of the TC's central sea level pressure (CSLP, warm-core structure and cloud distribution. Substantial (>20 % error reduction in track and CSLP forecasts was achieved from both clear-sky and all-sky AMSR2 assimilation experiments, and this improvement was consistent from the analysis time to 72-h forecasts. Moreover, the all-sky assimilation experiment consistently yielded better track and CSLP forecasts than the clear-sky did for all forecast lead times, due to a better analysis in the TC core areas. Positive forecast impact from assimilating AMSR2 radiances is also seen when verified against the European Center for Medium-Range Weather Forecasts (ECMWF analysis and the Stage IV precipitation analysis, with an overall larger positive impact from the all-sky assimilation experiment.

  4. Variational Data Assimilation Technique in Mathematical Modeling of Ocean Dynamics

    Science.gov (United States)

    Agoshkov, V. I.; Zalesny, V. B.

    2012-03-01

    Problems of the variational data assimilation for the primitive equation ocean model constructed at the Institute of Numerical Mathematics, Russian Academy of Sciences are considered. The model has a flexible computational structure and consists of two parts: a forward prognostic model, and its adjoint analog. The numerical algorithm for the forward and adjoint models is constructed based on the method of multicomponent splitting. The method includes splitting with respect to physical processes and space coordinates. Numerical experiments are performed with the use of the Indian Ocean and the World Ocean as examples. These numerical examples support the theoretical conclusions and demonstrate the rationality of the approach using an ocean dynamics model with an observed data assimilation procedure.

  5. Integrating biogeochemistry and ecology into ocean data assimilation systems

    DEFF Research Database (Denmark)

    Brasseur, Pierre; Gruber, Nicolas; Barciela, Rosa

    2009-01-01

    Monitoring and predicting the biogeochemical state of the ocean and marine ecosystems is an important application of operational oceanography that needs to be expanded. The accurate depiction of the ocean's physical environment enabled by Global Ocean Data Assimilation Experiment (GODAE) systems...... that are not yet considered essential, such as upper-ocean vertical fluxes that are critically important to biological activity. Further, the observing systems will need to be expanded in terms of in situ platforms (with intensified deployments of sensors for O-2 and chlorophyll, and inclusion of new sensors...... and temporal scales. In this paper, we discuss recent developments that enable coupling new biogeochemical models and assimilation components with the existing GODAE systems, and we examine the potential of such systems in several areas of interest: phytoplankton biomass monitoring in the open ocean, ocean...

  6. ALTERED STATES OF LITERATURE: SHAMANIC ASSIMILATION AND ROMANTIC INSPIRATION

    Directory of Open Access Journals (Sweden)

    Marcel de Lima Santos

    2012-12-01

    Full Text Available This article deals with the connections between the assimilation of certain shamanic practices related to Romantic inspiration in English literature. The interest in the world of altered states of consciousness as a manifestation of the sacred is typical among Romantic writers in nineteenth-century England. These writers in fact sought the manifestation of the world of dreams by means of ingesting substances that alter consciousness, thus assimilating a practice that is likewise and primarily shamanic. This search is the object under investigation in this article, which aims at showing that, despite conspicuous cultural differences, there are indeed similarities that pervade shamanic practices and the Romantic ideal in their quests toward the sacred.

  7. Data assimilation on atmospheric dispersion of radioactive materials

    DEFF Research Database (Denmark)

    Drews, Martin

    2006-01-01

    , radiological observations, e.g. dose rate measurements, can be used to improve these model predictions and to obtain real-time estimates of the atmospheric dispersion parameters. This thesis examines data assimilation in the context of atmospheric dispersion of radioactive materials. In particular, it presents...... with simultaneous measurements of the 41 Ar source term, the main meteorological parameters and direct plume measurements, using a Lidar scanning technique. The thesis provides a detailed description of the experiment and the subsequent data analysis. A reference dataset has been generated, which is suitable......During a nuclear accident in which radionuclides are released to the atmosphere, off-site dose assessment using atmospheric dispersion models play an important role in facilitating optimized interventions, i.e. for mitigating the radiological consequences. By using data assimilation methods...

  8. Identifying errors in dust models from data assimilation.

    Science.gov (United States)

    Pope, R J; Marsham, J H; Knippertz, P; Brooks, M E; Roberts, A J

    2016-09-16

    Airborne mineral dust is an important component of the Earth system and is increasingly predicted prognostically in weather and climate models. The recent development of data assimilation for remotely sensed aerosol optical depths (AODs) into models offers a new opportunity to better understand the characteristics and sources of model error. Here we examine assimilation increments from Moderate Resolution Imaging Spectroradiometer AODs over northern Africa in the Met Office global forecast model. The model underpredicts (overpredicts) dust in light (strong) winds, consistent with (submesoscale) mesoscale processes lifting dust in reality but being missed by the model. Dust is overpredicted in the Sahara and underpredicted in the Sahel. Using observations of lighting and rain, we show that haboobs (cold pool outflows from moist convection) are an important dust source in reality but are badly handled by the model's convection scheme. The approach shows promise to serve as a useful framework for future model development.

  9. Nitrate assimilation in plant shoots depends on photorespiration.

    Science.gov (United States)

    Rachmilevitch, Shimon; Cousins, Asaph B; Bloom, Arnold J

    2004-08-03

    Photorespiration, a process that diminishes net photosynthesis by approximately 25% in most plants, has been viewed as the unfavorable consequence of plants having evolved when the atmosphere contained much higher levels of carbon dioxide than it does today. Here we used two independent methods to show that exposure of Arabidopsis and wheat shoots to conditions that inhibited photorespiration also strongly inhibited nitrate assimilation. Thus, nitrate assimilation in both dicotyledonous and monocotyledonous species depends on photorespiration. This previously undescribed role for photorespiration (i) explains several responses of plants to rising carbon dioxide concentrations, including the inability of many plants to sustain rapid growth under elevated levels of carbon dioxide; and (ii) raises concerns about genetic manipulations to diminish photorespiration in crops.

  10. Data Assimilation in Integrated and Distributed Hydrological Models

    DEFF Research Database (Denmark)

    Zhang, Donghua

    Integrated hydrological models are frequently used in water-related environmental resource management. With our better understanding of the hydrological processes and the improved computational power, hydrological models are becoming increasingly more complex as they integrate multiple hydrological...... processes and provide simulations in refined temporal and spatial resolutions. Recent developments in measurement and sensor technologies have significantly improved the coverage, quality, frequency and diversity of hydrological observations. Data assimilation provides a great potential in relation...... to efficient use of traditional and new observational data in integrated hydrological models, as this technique can improve model prediction and reduce model uncertainty. The thesis investigates several challenges within the scope of data assimilation in integrated hydrological models. From the methodological...

  11. Data assimilation in integrated hydrological modeling using ensemble Kalman filtering

    DEFF Research Database (Denmark)

    Rasmussen, Jørn; Madsen, H.; Jensen, Karsten Høgh

    2015-01-01

    Groundwater head and stream discharge is assimilated using the ensemble transform Kalman filter in an integrated hydrological model with the aim of studying the relationship between the filter performance and the ensemble size. In an attempt to reduce the required number of ensemble members......, an adaptive localization method is used. The performance of the adaptive localization method is compared to the more common distance-based localization. The relationship between filter performance in terms of hydraulic head and discharge error and the number of ensemble members is investigated for varying...... and estimating parameters requires a much larger ensemble size than just assimilating groundwater head observations. However, the required ensemble size can be greatly reduced with the use of adaptive localization, which by far outperforms distance-based localization. The study is conducted using synthetic data...

  12. Data assimilation applied to a chaotic toy climate

    CERN Document Server

    Harris, Kameron Decker; Hitt, Darren L; Danforth, Christopher M

    2011-01-01

    A simplified model of natural convection, similar to the 1963 Lorenz system, is derived and compared to computational fluid dynamics simulations as a test bed for data assimilation methods. The thermosyphon is represented by a long time flow simulation, which serves as a reference "truth". Forecasts are then made using the Lorenz-like model and synchronized to noisy and limited observations of the truth, a realistic \\textit{in silico} forecasting scenario, using three dimensional variational filtering, the extended Kalman filter, the ensemble square root filter, and the ensemble transform Kalman filter. We find that these data assimilation algorithms successfully couple the simplified model to observations of the computational fluid dynamics simulation and, in fact, can infer dynamics absent from the model.

  13. Adaptive Covariance Inflation in a Multi-Resolution Assimilation Scheme

    Science.gov (United States)

    Hickmann, K. S.; Godinez, H. C.

    2015-12-01

    When forecasts are performed using modern data assimilation methods observation and model error can be scaledependent. During data assimilation the blending of error across scales can result in model divergence since largeerrors at one scale can be propagated across scales during the analysis step. Wavelet based multi-resolution analysiscan be used to separate scales in model and observations during the application of an ensemble Kalman filter. However,this separation is done at the cost of implementing an ensemble Kalman filter at each scale. This presents problemswhen tuning the covariance inflation parameter at each scale. We present a method to adaptively tune a scale dependentcovariance inflation vector based on balancing the covariance of the innovation and the covariance of observations ofthe ensemble. Our methods are demonstrated on a one dimensional Kuramoto-Sivashinsky (K-S) model known todemonstrate non-linear interactions between scales.

  14. Data Assimilation by Conditioning of Driving Noise on Future Observations

    KAUST Repository

    Lee, Wonjung

    2014-08-01

    Conventional recursive filtering approaches, designed for quantifying the state of an evolving stochastic dynamical system with intermittent observations, use a sequence of i) an uncertainty propagation step followed by ii) a step where the associated data is assimilated using Bayes\\' rule. Alternatively, the order of the steps can be switched to i) one step ahead data assimilation followed by ii) uncertainty propagation. In this paper, we apply this smoothing-based sequential filter to systems driven by random noise, however with the conditioning on future observation not only to the system variable but to the driving noise. Our research reveals that, for the nonlinear filtering problem, the conditioned driving noise is biased by a nonzero mean and in turn pushes forward the filtering solution in time closer to the true state when it drives the system. As a result our proposed method can yield a more accurate approximate solution for the state estimation problem. © 1991-2012 IEEE.

  15. [Studies on the assimilation of inorganic selenium by yeast].

    Science.gov (United States)

    Xie, L; Ouyang, Z; Xie, X

    1990-02-01

    In the process of assimilation of inorganic selenium by yeast to the organic-selenium, some rules on the relation of the kinds of culture medium, concentration of sodium selenite and methionine to the total selenium and selenomethionine content in the yeast formed have been found; and a new, accurate procedure--modified acid hydrolysis-ion exchange chromatography for determining the content of seleno-amino acid in biological materials has been established.

  16. The Assimilation of Astrology in the Tibetan Bon Religion

    OpenAIRE

    Ramble, Charles

    2013-01-01

    International audience; The sciences subsumed within the Tibetan category tsi (rtsis), "calculation," include calendrical reckoning and astrology (kartsi; dkar rtsis) and, secondly, elemental divination (naktsi; nag rtsis). The former is essentially based on the Kālacakra, a late tantra that was introduced from India in the twelfth century, and the latter on Chinese precedents. Although scholarly literature concerning the Tibetans' assimilation of these sciences is steadily growing, there has...

  17. Assimilation of dynamic topography in a global model

    OpenAIRE

    2013-01-01

    Absolute dynamic topography, i.e. the difference between time dependent multi-mission altimetric sea surface height and one of the most recent GOCE and GRACE based geoids, is assimilated in a global ocean general circulation model. To this end we apply an ensemble based Kalman technique, the "Error Subspace Transform Kalman Filter" (ESTKF). Here we present an update of our work. First of all the geoid is improved over previous versions. The ocean model now includes better dynam...

  18. Consistent Data Assimilation of Isotopes: 242Pu and 105Pd

    Energy Technology Data Exchange (ETDEWEB)

    G. Palmiotti; H. Hiruta; M. Salvatores

    2012-09-01

    In this annual report we illustrate the methodology of the consistent data assimilation that allows to use the information coming from integral experiments for improving the basic nuclear parameters used in cross section evaluation. A series of integral experiments are analyzed using the EMPIRE evaluated files for 242Pu and 105Pd. In particular irradiation experiments (PROFIL-1 and -2, TRAPU-1, -2 and -3) provide information about capture cross sections, and a critical configuration, COSMO, where fission spectral indexes were measured, provides information about fission cross section. The observed discrepancies between calculated and experimental results are used in conjunction with the computed sensitivity coefficients and covariance matrix for nuclear parameters in a consistent data assimilation. The results obtained by the consistent data assimilation indicate that not so large modifications on some key identified nuclear parameters allow to obtain reasonable C/E. However, for some parameters such variations are outside the range of 1 s of their initial standard deviation. This can indicate a possible conflict between differential measurements (used to calculate the initial standard deviations) and the integral measurements used in the statistical data adjustment. Moreover, an inconsistency between the C/E of two sets of irradiation experiments (PROFIL and TRAPU) is observed for 242Pu. This is the end of this project funded by the Nuclear Physics Program of the DOE Office of Science. We can indicate that a proof of principle has been demonstrated for a few isotopes for this innovative methodology. However, we are still far from having explored all the possibilities and made this methodology to be considered proved and robust. In particular many issues are worth further investigation: • Non-linear effects • Flexibility of nuclear parameters in describing cross sections • Multi-isotope consistent assimilation • Consistency between differential and integral

  19. Robustness of nuclear core activity reconstruction by data assimilation

    Energy Technology Data Exchange (ETDEWEB)

    Bouriquet, Bertrand, E-mail: bertrand.bouriquet@cerfacs.f [Sciences de l' Univers au CERFACS, URA CERFACS/CNRS No. 1875, 42 avenue Gaspard Coriolis, F-31057 Toulouse Cedex 01 (France); Argaud, Jean-Philippe [Sciences de l' Univers au CERFACS, URA CERFACS/CNRS No. 1875, 42 avenue Gaspard Coriolis, F-31057 Toulouse Cedex 01 (France); Electricite de France, 1 avenue du General de Gaulle, F-92141 Clamart Cedex (France); Erhard, Patrick [Electricite de France, 1 avenue du General de Gaulle, F-92141 Clamart Cedex (France); Massart, Sebastien [Sciences de l' Univers au CERFACS, URA CERFACS/CNRS No. 1875, 42 avenue Gaspard Coriolis, F-31057 Toulouse Cedex 01 (France); Poncot, Angelique [Electricite de France, 1 avenue du General de Gaulle, F-92141 Clamart Cedex (France); Ricci, Sophie [Sciences de l' Univers au CERFACS, URA CERFACS/CNRS No. 1875, 42 avenue Gaspard Coriolis, F-31057 Toulouse Cedex 01 (France); Thual, Olivier [Sciences de l' Univers au CERFACS, URA CERFACS/CNRS No. 1875, 42 avenue Gaspard Coriolis, F-31057 Toulouse Cedex 01 (France); Universite de Toulouse, INPT, UPS, IMFT, Allee Camille Soula, F-31400 Toulouse (France)

    2011-02-11

    We apply a data assimilation technique, inspired from meteorological applications, to perform an optimal reconstruction of the neutronic activity field in a nuclear core. Both measurements and information coming from a numerical model are used. We first study the robustness of the method when the amount of measured information decreases. We then study the influence of the nature of the instruments and their spatial repartition on the efficiency of the field reconstruction.

  20. Leaf carbon assimilation and molecular phylogeny in Cattleya species (Orchidaceae).

    Science.gov (United States)

    Andrade-Souza, V; Almeida, A-A F; Corrêa, R X; Costa, M A; Mielke, M S; Gomes, F P

    2009-08-11

    We examined leaf CO(2) assimilation and how it varied among species within the orchid genus Cattleya. Measurements of CO(2) assimilation and maximum quantum yield of PS II (Fv/Fm) were made for mature leaves of nine species using a portable system for photosynthesis measurement and a portable fluorometer. Leaf area was measured with an area meter, and the specific leaf mass was determined. DNA of nine Cattleya species and two species of Hadrolaelia was extracted using the CTAB protocol. Each sample was amplified and sequenced using primers for the trnL gene. The phylogenetic analyses, using neighbor-joining and maximum parsimony methods, retrieved a group that included Cattleya and Hadrolaelia species, in which the unifoliate species were separated from the bifoliates. The topologies of the two cladograms showed some similarities. However, C. guttata (bifoliate) was placed in the unifoliate clade in the neighbor-joining tree, while C. warneri (unifoliate) was not placed in this clade in the maximum parsimony tree. Most Cattleya species keep the leaf stomata closed from 6 am to 4 pm. We suggest that C. elongata, C. tigrina and C. tenuis have C(3)-crassulacean acid metabolism since they open their stomata around 12 am. The Fv/Fm values remained relatively constant during the measurements of CO(2) assimilation. The same was observed for the specific leaf mass values, although great variations were found in the leaf area values. When the species were grouped using molecular data in the neighbor-joining analysis, no relation was observed with CO(2) assimilation.

  1. Accounting for observation errors in image data assimilation

    Directory of Open Access Journals (Sweden)

    Vincent Chabot

    2015-02-01

    Full Text Available This paper deals with the assimilation of image-type data. Such kinds of data, such as satellite images, have good properties (dense coverage in space and time, but also one crucial problem for data assimilation: they are affected by spatially correlated errors. Classical approaches in data assimilation assume uncorrelated noise, because the proper description and numerical manipulation of non-diagonal error covariance matrices is complex. This paper proposes a simple way to provide observation error covariance matrices adapted to spatially correlated errors. This is done using various image transformations: multiscale (Wavelets, Fourier, Curvelets, gradients, and gradient orientations. These transformations are described and compared to classical approaches, such as pixel-to-pixel comparison and observation thinning. We provide simple yet effective covariance matrices for each of these transformations, which take into account the observation error correlations and improve the results. The effectiveness of the proposed approach is demonstrated on twin experiments performed on a 2-D shallow-water model.

  2. Spectral characteristics of background error covariance and multiscale data assimilation

    Energy Technology Data Exchange (ETDEWEB)

    Li, Zhijin [Jet Propulsion Laboratory, California Institute of Technology, Pasadena California USA; Cheng, Xiaoping [The Joint Institute for Regional Earth System Science and Engineering, University of California, Los Angeles California USA; Gustafson Jr., William I. [Pacific Northwest National Laboratory, Richland Washington USA; Vogelmann, Andrew M. [Brookhaven National Laboratory, Upton New York USA

    2016-05-17

    The spatial resolutions of numerical atmospheric and oceanic circulation models have steadily increased over the past decades. Horizontal grid spacing down to the order of 1 km is now often used to resolve cloud systems in the atmosphere and sub-mesoscale circulation systems in the ocean. These fine resolution models encompass a wide range of temporal and spatial scales, across which dynamical and statistical properties vary. In particular, dynamic flow systems for small scales can become spatially localized and temporarily intermittent. An analysis shows that the background correlation length scale is larger than 75 km for streamfunctions, even for a 2-km resolution model, and larger than 25 km for water vapor mixing ratios. The theoretical analyses suggest that such correlation length scales prevent the currently used data assimilation schemes from constraining spatial scales smaller than 150 km for streamfunctions and 50 km for water vapor mixing ratios. These results highlight the necessity of fundamentally modifying the currently used data assimilation algorithm for assimilating high-resolution observations into the aforementioned fine resolution models. A multiscale methodology based on scale decomposition is suggested, and challenges are discussed.

  3. Alternative splicing generates a smaller assortment of CaV2.1 transcripts in cerebellar Purkinje cells than in the cerebellum.

    Science.gov (United States)

    Kanumilli, Srinivasan; Tringham, Elizabeth W; Payne, C Elizabeth; Dupere, Jonathan R B; Venkateswarlu, Kanamarlapudi; Usowicz, Maria M

    2006-01-12

    P/Q-type calcium channels control many calcium-driven functions in the brain. The CACNA1A gene encoding the pore-forming CaV2.1 (alpha1A) subunit of P/Q-type channels undergoes alternative splicing at multiple loci. This results in channel variants with different phenotypes. However, the combinatorial patterns of alternative splice events at two or more loci, and hence the diversity of CaV2.1 transcripts, are incompletely defined for specific brain regions and types of brain neurons. Using RT-PCR and splice variant-specific primers, we have identified multiple CaV2.1 transcript variants defined by different pairs of splice events in the cerebellum of adult rat. We have uncovered new splice variations between exons 28 and 34 (some of which predict a premature stop codon) and a new variation in exon 47 (which predicts a novel extended COOH-terminus). Single cell RT-PCR reveals that each individual cerebellar Purkinje neuron also expresses multiple alternative CaV2.1 transcripts, but the assortment is smaller than in the cerebellum. Two of these variants encode different extended COOH-termini which are not the same as those previously reported in Purkinje cells of the mouse. Our patch-clamp recordings show that calcium channel currents in the soma and dendrites of Purkinje cells are largely inhibited by a concentration of omega-agatoxin IVA selective for P-type over Q-type channels, suggesting that the different transcripts may form phenotypic variants of P-type calcium channels in Purkinje cells. These results expand the known diversity of CaV2.1 transcripts in cerebellar Purkinje cells, and propose the selective expression of distinct assortments of CaV2.1 transcripts in different brain neurons and species.

  4. Comparison of the Assimilation of Compact Phase Space Retrievals (CPSRs) with Conventional Retrieval Assimilation Methods for MOPITT CO in WRF-Chem/DART

    Science.gov (United States)

    Mizzi, A. P.; Arellano, A. F.; Edwards, D. P.; Anderson, J. L.

    2015-12-01

    We introduced "compact phase space retrievals" (CPSRs) for assimilating atmospheric composition observations in Mizzi et al. (2015). CPSRs address many of the challenges associated with assimilating retrievals by: (i) removing the contribution of the retrieval prior, (ii) diagonalizing the associated error covariance, and (iii) compacting the phase space retrievals. Mizzi et al. (2015) showed that the CPSRs reduced assimilation computational costs by approximately one-third while maintaining the relevant forecast skill metrics. In this paper, we examine phase space retrievals and compare CPSRs to more conventional retrieval assimilation methods. Specifically we compare the assimilation of CPSRs with that of (i) raw retrievals where the observation error is based on the diagonal of the retrieval error covariance, (ii) quasi-optimal retrievals (QORs) where the observation error is determined as (i), and (iii) QORs where the observation error is based on an SVD-based transform of the error covariance. Method (i) is the easiest to interpret because the assimilation occurs in retrieval space. Method (ii) explicitly removes the retrieval prior term's contribution but is more difficult to interpret because the assimilated observations are residuals. Finally, method (iii) is the phase space retrieval algorithm of Migliorini et al. (2008). We consider two variants: (i) withholding the inverse square scaling and (ii) using phase space filtering for optimization. We apply those methods to month-long forecast/assimilation experiments with continuous cycling.

  5. Forecasts and assimilation experiments of the Antarctic ozone hole 2008

    Science.gov (United States)

    Flemming, J.; Inness, A.; Jones, L.; Eskes, H. J.; Huijnen, V.; Schultz, M. G.; Stein, O.; Cariolle, D.; Kinnison, D.; Brasseur, G.

    2011-03-01

    The 2008 Antarctic ozone hole was one of the largest and most long-lived in recent years. Predictions of the ozone hole were made in near-real time (NRT) and hindcast mode with the Integrated Forecast System (IFS) of the European Centre for Medium-Range Weather Forecasts (ECMWF). The forecasts were carried out both with and without assimilation of satellite observations from multiple instruments to provide more realistic initial conditions. Three different chemistry schemes were applied for the description of stratospheric ozone chemistry: (i) a linearization of the ozone chemistry, (ii) the stratospheric chemical mechanism of the Model of Ozone and Related Chemical Tracers, version 3, (MOZART-3) and (iii) the relaxation to climatology as implemented in the Transport Model, version 5, (TM5). The IFS uses the latter two schemes by means of a two-way coupled system. Without assimilation, the forecasts showed model-specific shortcomings in predicting start time, extent and duration of the ozone hole. The assimilation of satellite observations from the Microwave Limb Sounder (MLS), the Ozone Monitoring Instrument (OMI), the Solar Backscattering Ultraviolet radiometer (SBUV-2) and the SCanning Imaging Absorption spectroMeter for Atmospheric CartograpHY (SCIAMACHY) led to a significant improvement of the forecasts when compared with total columns and vertical profiles from ozone sondes. The combined assimilation of observations from multiple instruments helped to overcome limitations of the ultraviolet (UV) sensors at low solar elevation over Antarctica. The assimilation of data from MLS was crucial to obtain a good agreement with the observed ozone profiles both in the polar stratosphere and troposphere. The ozone analyses by the three model configurations were very similar despite the different underlying chemistry schemes. Using ozone analyses as initial conditions had a very beneficial but variable effect on the predictability of the ozone hole over 15 days. The

  6. Sequential Data Assimilation for Seismicity: a Proof of Concept

    Science.gov (United States)

    van Dinther, Ylona; Fichtner, Andreas; Kuensch, Hansruedi

    2016-04-01

    Our probabilistic forecasting ability and physical understanding of earthquakes is significantly hampered by limited indications on the current and evolving state of stress and strength on faults. This information is typically thought to be beyond our resolution capabilities based on surface data. We show that the state of stress and strength are actually obtainable for settings with one dominant fault. State variables and their uncertainties are obtained using Ensemble Kalman Filtering, a sequential data assimilation technique extensively developed for weather forecasting purposes. Through the least-squares solution of Bayes theorem erroneous data is for the first time assimilated to update a Partial Differential Equation-driven seismic cycle model. This visco-elasto-plastic continuum forward model solves Navier-Stokes equations with a rate-dependent friction coefficient (van Dinther et al., JGR, 2013). To prove the concept of this weather - earthquake forecasting bridge we perform a perfect model test. Synthetic numerical data from a single analogue borehole is assimilated into 20 ensemble models over 14 cycles of analogue earthquakes. Since we know the true state of the numerical data model, a quantitative and qualitative evaluation shows that meaningful information on the stress and strength of the unobserved fault is typically already available, once data from a single, shallow borehole is assimilated over part of a seismic cycle. This is possible, since the sampled error covariance matrix contains prior information on the physics that relates velocities, stresses, and pressures at the surface to those at the fault. During the analysis step stress and strength distributions are thus reconstructed in such a way that fault coupling can be updated to either inhibit or trigger events. In the subsequent forward propagation step the physical equations are solved to propagate the updated states forward in time and thus provide probabilistic information on the

  7. On the assimilation of ice velocity and concentration data into large-scale sea ice models

    Directory of Open Access Journals (Sweden)

    V. Dulière

    2007-03-01

    Full Text Available Data assimilation into sea ice models designed for climate studies has started about 15 years ago. In most of the studies conducted so far, it is assumed that the improvement brought by the assimilation is straightforward. However, some studies suggest this might not be true. In order to elucidate this question and to find an appropriate way to further assimilate sea ice concentration and velocity observations into a global sea ice-ocean model, we analyze here results from a number of twin experiments (i.e. experiments in which the assimilated data are model outputs carried out with a simplified model of the Arctic sea ice pack. Our objective is to determine to what degree the assimilation of ice velocity and/or concentration data improves the global performance of the model and, more specifically, reduces the error in the computed ice thickness. A simple optimal interpolation scheme is used, and outputs from a control run and from perturbed experiments without and with data assimilation are thoroughly compared. Our results indicate that, under certain conditions depending on the assimilation weights and the type of model error, the assimilation of ice velocity data enhances the model performance. The assimilation of ice concentration data can also help in improving the model behavior, but it has to be handled with care because of the strong connection between ice concentration and ice thickness.

    This study is preliminary study towards real observation data assimilation into NEMOLIM, a global sea ice-ocean model.

  8. Aluminum-induced decrease in CO{sub 2} assimilation in citrus seedlings is accompanied by decreased activities of key enzymes involved in CO{sub 2} assimilation

    Energy Technology Data Exchange (ETDEWEB)

    Chen, L-S.; Liu, X-H. [Fujian Agriculture and Forestry University, College of Horticulture, Fuzhou (China); Qi, Y-P. [Fujian Provincial Institute of Medical Sciences, Fuzhou (China); Smith, B. R. [Cornell University, Dept. of Horticulture, Ithaca, NY (United States)

    2005-03-01

    Many previous studies provided evidence that heavy metals affect the carbon dioxide assimilation of plants by inhibiting different enzymes involved in the Calvin cycle. Other studies have shown little or no change in the activities of Calvion cycle enzymes accompanying a heavy metal-induced decline in carbon dioxide assimilation. This study reexamined aluminium toxicity in leaf carbohydrate metabolism by determining responses in citrus leaves to aluminium, specifically in terms of carbon dioxide assimilation, key enzymes in the Calvin cycle, starch and sucrose syntheses, non-structural carbohydrates, and photosynthetic intermediates. Based on results in each of these areas, it was concluded that aluminium decreases carbon dioxide assimilation, but in so doing either increases or has no effect on the activities of enzymes involved in the Calvin cycle. The decrease in carbon dioxide assimilation induced by aluminium is suspected to be the result of increased photorespiration. 41 refs., 5 tabs., 2 figs.

  9. On the Assimilation of Satellite Sounder Data in Cloudy Skies in Numerical Weather Prediction Models

    Institute of Scientific and Technical Information of China (English)

    李俊; 王培; 李金龙; 郑婧

    2016-01-01

    Satellite measurements are an important source of global observations in support of numerical weather prediction (NWP). The assimilation of satellite radiances under clear skies has greatly improved NWP forecast scores. However, the application of radiances in cloudy skies remains a signifi cant challenge. In order to better assimilate radiances in cloudy skies, it is very important to detect any clear fi eld-of-view (FOV) accurately and assimilate cloudy radiances appropriately. Research progress on both clear FOV detection methodologies and cloudy radiance assimilation techniques are reviewed in this paper. Overview on approaches being implemented in the operational centers and studied by the satellite data assimilation research community is presented. Challenges and future directions for satellite sounder radiance assimilation in cloudy skies in NWP models are also discussed.

  10. A sea temperature data assimilation system for the China Seas and adjacent areas

    Institute of Scientific and Technical Information of China (English)

    YOU Xiaobao; ZHOU Guangqing; ZHU Jiang; LI Rongfeng

    2003-01-01

    A sea temperature data assimilation system for the China Seas and adjacent areas is developed based on a nested regional ocean circulation model and variational optimal interpolation assimilation method. A 12-year assimilation experiment is performed by using the observational temperature profiles from World Ocean Database 1998 (WOD98) and ECMWF reanalysis surface wind stress. Experimental results indicate that the variational scheme shows good skill in assimilating the observed sea temperature into a regional ocean circulation model. Compared with simulation alone, the sea temperature data assimilation significantly improves the performance of a regional ocean model and obtains comprehensive description of the circulations in the China Seas and adjacent areas. Assimilation results, such as the strength and flowing axis of the Kuroshio, Yellow Sea Cold Water Mass and its corresponding horizontal circulation in summer and dipole eddies in the South China Sea in the late summer/early autumn and the eastward jet between them, are well consistent with the observed evidences.

  11. Assimilation of NUCAPS Retrieved Profiles in GSI for Unique Forecasting Applications

    Science.gov (United States)

    Berndt, Emily Beth; Zavodsky, Bradley; Srikishen, Jayanthi; Blankenship, Clay

    2015-01-01

    Hyperspectral IR profiles can be assimilated in GSI as a separate observation other than radiosondes with only changes to tables in the fix directory. Assimilation of profiles does produce changes to analysis fields and evidenced by: Innovations larger than +/-2.0 K are present and represent where individual profiles impact the final temperature analysis.The updated temperature analysis is colder behind the cold front and warmer in the warm sector. The updated moisture analysis is modified more in the low levels and tends to be drier than the original model background Analysis of model output shows: Differences relative to 13-km RAP analyses are smaller when profiles are assimilated with NUCAPS errors. CAPE is under-forecasted when assimilating NUCAPS profiles, which could be problematic for severe weather forecasting Refining the assimilation technique to incorporate an error covariance matrix and creating a separate GSI module to assimilate satellite profiles may improve results.

  12. Employment and Wage Assimilation of Male First Generation Immigrants in Denmark

    DEFF Research Database (Denmark)

    Husted, Leif; Nielsen, Helena Skyt; Rosholm, Michael;

    2000-01-01

    Labour market assimilation of Danish first generation male immigrants is analysed based on two panel data sets covering the population of immigrants and 10% of the Danish population during 1984-1995. Wages and employment probabilities are estimated jointly in a random effects model which corrects...... for unobserved cohort and individual effects and panel selectivity due to missing wage information. The results show that immigrants assimilate partially to Danes, but the assimilation process differs between refugees and non-refugees....

  13. Impact of high-resolution data assimilation of GPS zenith delay on Mediterranean heavy rainfall forecasting

    Directory of Open Access Journals (Sweden)

    K. Boniface

    2009-07-01

    Full Text Available Impact of GPS (Global Positioning System data assimilation is assessed here using a high-resolution numerical weather prediction system at 2.5 km horizontal resolution. The Zenithal Tropospheric Delay (ZTD GPS data from mesoscale networks are assimilated with the 3DVAR AROME data assimilation scheme. Data from more than 280 stations over the model domain have been assimilated during 15-day long assimilation cycles prior each of the two studied events. The results of these assimilation cycles show that the assimilation of GPS ZTD with the AROME system performs well in producing analyses closer to the ZTD observations in average.

    Then the impacts of assimilating GPS data on the precipitation forecast have been evaluated. For the first case, only the AROME runs starting a few hours prior the triggering of the convective system are able to simulate the convective precipitation. The assimilation of GPS ZTD observations improves the simulation of the spatial extent of the precipitation, but slightly underestimates the heaviest precipitation in that case compared with the experiment without GPS. The accuracy of the precipitation forecast for the second case is much better. The analyses from the control assimilation cycle provide already a good description of the atmosphere state that cannot be further improved by the assimilation of GPS observations. Only for the latest day (22 November 2007, significant differences have been found between the two parallel cycles. In that case, the assimilation of GPS ZTD allows to improve the first 6 to 12 h of the precipitation forecast.

  14. Recent Updates to SWANFAR (registered trademark), a 5DVAR Data Assimilation System for SWAN

    Science.gov (United States)

    2016-11-10

    results closer to each measured data value (e.g., Hasselmann et al., 1997; Voorips et al., 1997; Aouf et al., 2006). These simpler schemes did not account ...system at different stages are presented, followed by discussion of the advantages and limitations of spectral data assimilation built upon the SWAN...agreement between measured and post-assimilation wave spectra. The SWANFARR© spectral wave data assimilation system described here is based on the

  15. Ocular teratogens: old acquaintances and new dangers.

    Science.gov (United States)

    Tandon, A; Mulvihill, A

    2009-06-01

    Recent research into animal studies has contributed significantly to understanding the pathophysiology of some well-known teratogens, such as alcohol. Techniques, such as positron emission tomography (PET) and retinal synaptogenesis studies, have helped determine the specific areas in the developing brain and ocular structures, which are targeted by various teratogens. In this article, we also highlight a few newer agents, such as benzodiazepines, with potential for ocular malformation and morbidity in the developing foetus.

  16. [Lipoprotein receptors. Old acquaintances and newcomers].

    Science.gov (United States)

    Ducobu, J

    1997-02-01

    Lipoprotein receptors are plasma membrane proteins of high affinity which interact with circulating lipoprotein particles. The well characterized LDL receptor continues to be analysed and some new findings on its intracellular mechanisms of action have emerged. New lipoprotein receptors have recently been described: the chylomicron remnant receptor or LDL-related protein (LRP), the lipolysis stimulated receptor (LSR), the very low density lipoprotein receptor (VLDLR), the HDL receptor (HDLR) and the scavenger receptor (SR). The molecular details of the receptors will facilitate the development of new therapeutic means to improve receptor-mediated clearance of lipoproteins.

  17. [Spondyloarthritis: new names for old acquaintances].

    Science.gov (United States)

    van der Horst-Bruinsma, Irene E

    2014-01-01

    After rheumatoid arthritis, ankylosing spondylitis (AS) is one of the most common rheumatic diseases. AS belongs to the spondyloarthritis group which is characterised by inflammation of the spine and has a strong genetic association with the HLA-B27 antigen. Recently, the Assessment of SpondyloArthritis International Society has introduced new international classification criteria for spondyloarthritis, i.e. axial and peripheral manifestations AS is one of the known axial spondyloarthritides but it is also a type of axial spondyloarthritis that does not show radiographic abnormalities, but has the same symptoms and risk factors that characterise axial spondylarthritis. This form is known as non-radiographic axial spondylarthritis. Peripheral spondyloarthritis is characterised by peripheral arthritis, enthesitis and dactylitis. Examples of peripheral spondyloarthritides are psoriatic arthritis and reactive arthritis, previously known as Reiter's syndrome.

  18. Rates, Mechanisms, and Implications of Crustal Assimilation in Continental Arcs

    Science.gov (United States)

    Dungan, M.; Davidson, J.

    2002-12-01

    Contrary to the limiting constraints postulated by Bowen for the coupled thermal and mass balance implicated in assimilation, many studies [1-6] suggest that multi-stage and multi-component assimilation, abetted by magma mixing, may be volumetrically important and have profound consequences for the chemistry of basaltic and evolved magmas in long-lived continental magmatic systems. The probability of a primitive or evolved basalt arriving at the Earth's surface having undergone perfectly closed-system evolution during passage through 25-60 km of continental crust is vanishingly low. A case-by-case demonstration that the intra-crustal chemical overprint is trivial, or that it can be quantified and subtracted, is an essential step in any evaluation of mantle source-region chemistry and processes based on inversion of continental basalt compositions. In magmatic systems characterized by mafic magma recharge the thermal energy and physical dynamism needed for assimilation are not constrained to come uniquely from one magma batch [7, 8]. Equally important is that assimilation is rarely equivalent to bulk melting of ingested blocks followed by reservoir-wide homogenization. The mechanics of crustal assimilation are governed by grain boundary melting, disaggregation, and dispersal of refractory solids (including xenocryst settling) wherein liberated low-density, incompatible element-enriched partial melts have the capacity to render primitive arc magma batches variably modified, as well as heterogeneous on short length-scales. Evidence that basalts thermally erode surface channels and conduit walls, and new observations constraining the maximum time that some extensively melted xenoliths have resided in their host magmas, indicate that the time required to impose an open-system overprint on a hot basaltic magma (days to yrs) is far shorter than typical repose periods at most arc volcanoes (50-500 yrs). Assimilative recycling of broadly gabbroic arc cumulates has had large

  19. Data Assimilation on a Quantum Annealing Computer: Feasibility and Scalability

    Science.gov (United States)

    Nearing, G. S.; Halem, M.; Chapman, D. R.; Pelissier, C. S.

    2014-12-01

    Data assimilation is one of the ubiquitous and computationally hard problems in the Earth Sciences. In particular, ensemble-based methods require a large number of model evaluations to estimate the prior probability density over system states, and variational methods require adjoint calculations and iteration to locate the maximum a posteriori solution in the presence of nonlinear models and observation operators. Quantum annealing computers (QAC) like the new D-Wave housed at the NASA Ames Research Center can be used for optimization and sampling, and therefore offers a new possibility for efficiently solving hard data assimilation problems. Coding on the QAC is not straightforward: a problem must be posed as a Quadratic Unconstrained Binary Optimization (QUBO) and mapped to a spherical Chimera graph. We have developed a method for compiling nonlinear 4D-Var problems on the D-Wave that consists of five steps: Emulating the nonlinear model and/or observation function using radial basis functions (RBF) or Chebyshev polynomials. Truncating a Taylor series around each RBF kernel. Reducing the Taylor polynomial to a quadratic using ancilla gadgets. Mapping the real-valued quadratic to a fixed-precision binary quadratic. Mapping the fully coupled binary quadratic to a partially coupled spherical Chimera graph using ancilla gadgets. At present the D-Wave contains 512 qbits (with 1024 and 2048 qbit machines due in the next two years); this machine size allows us to estimate only 3 state variables at each satellite overpass. However, QAC's solve optimization problems using a physical (quantum) system, and therefore do not require iterations or calculation of model adjoints. This has the potential to revolutionize our ability to efficiently perform variational data assimilation, as the size of these computers grows in the coming years.

  20. Assimilation of GIRO Data into a Real-Time IRI

    Science.gov (United States)

    Galkin, I. A.; Reinisch, B. W.; Huang, X.; Bilitza, D.

    2012-01-01

    Increasingly accurate and detailed global 3-D specification of the Earth's space plasma environment is required to further understand its intricate organization and behavior. For a long time space physics and aeronomy research has been data starved due to the great variety of natural time scales involved in the plasma phenomenology. We have started developing a new approach to the global ionospheric specification called Real-Time Assimilative Mapping (RTAM). The IRI-RTAM will use data from the Global Ionospheric Radio Observatory (GIRO) to smoothly transform International Reference Ionosphere's (IRI's) background empirical maps of the ionospheric characteristics to match the observations. Such empirical assimilative modeling will provide a high-resolution, global picture of the ionospheric response to various short-term events observed during periods of storm activity or the impact of gravity waves coupling the ionosphere to the lower atmosphere, including timelines of the vertical restructuring of the plasma distribution. It will also contribute to the challenging task of providing a rapid insight into the temporal and spatial space weather development using the real-time GIRO data streams. The new assimilation technique "updates" the IRI electron density distribution while preserving the overall integrity of IRI s typical ionospheric feature representations. The technique adjusts the coefficients of the spherical/diurnal expansions used by the CCIR and URSI-88 model to obtain the global sub-peak electron density distribution. The set of global corrected coefficients can be generated as frequently as every 15 min and easily disseminated using a single real-time RTAM server operated by GIRO.

  1. Hydrologic Remote Sensing and Land Surface Data Assimilation

    Directory of Open Access Journals (Sweden)

    Hamid Moradkhani

    2008-05-01

    Full Text Available Accurate, reliable and skillful forecasting of key environmental variables such as soil moisture and snow are of paramount importance due to their strong influence on many water resources applications including flood control, agricultural production and effective water resources management which collectively control the behavior of the climate system. Soil moisture is a key state variable in land surface–atmosphere interactions affecting surface energy fluxes, runoff and the radiation balance. Snow processes also have a large influence on land-atmosphere energy exchanges due to snow high albedo, low thermal conductivity and considerable spatial and temporal variability resulting in the dramatic change on surface and ground temperature. Measurement of these two variables is possible through variety of methods using ground-based and remote sensing procedures. Remote sensing, however, holds great promise for soil moisture and snow measurements which have considerable spatial and temporal variability. Merging these measurements with hydrologic model outputs in a systematic and effective way results in an improvement of land surface model prediction. Data Assimilation provides a mechanism to combine these two sources of estimation. Much success has been attained in recent years in using data from passive microwave sensors and assimilating them into the models. This paper provides an overview of the remote sensing measurement techniques for soil moisture and snow data and describes the advances in data assimilation techniques through the ensemble filtering, mainly Ensemble Kalman filter (EnKF and Particle filter (PF, for improving the model prediction and reducing the uncertainties involved in prediction process. It is believed that PF provides a complete representation of the probability distribution of state variables of interests (according to sequential Bayes law and could be a strong alternative to EnKF which is subject to some

  2. Sulfate assimilation in eukaryotes: fusions, relocations and lateral transfers

    Directory of Open Access Journals (Sweden)

    Durnford Dion G

    2008-02-01

    Full Text Available Abstract Background The sulfate assimilation pathway is present in photosynthetic organisms, fungi, and many bacteria, providing reduced sulfur for the synthesis of cysteine and methionine and a range of other metabolites. In photosynthetic eukaryotes sulfate is reduced in the plastids whereas in aplastidic eukaryotes the pathway is cytosolic. The only known exception is Euglena gracilis, where the pathway is localized in mitochondria. To obtain an insight into the evolution of the sulfate assimilation pathway in eukaryotes and relationships of the differently compartmentalized isoforms we determined the locations of the pathway in lineages for which this was unknown and performed detailed phylogenetic analyses of three enzymes involved in sulfate reduction: ATP sulfurylase (ATPS, adenosine 5'-phosphosulfate reductase (APR and sulfite reductase (SiR. Results The inheritance of ATPS, APR and the related 3'-phosphoadenosine 5'-phosphosulfate reductase (PAPR are remarkable, with multiple origins in the lineages that comprise the opisthokonts, different isoforms in chlorophytes and streptophytes, gene fusions with other enzymes of the pathway, evidence a eukaryote to prokaryote lateral gene transfer, changes in substrate specificity and two reversals of cellular location of host- and endosymbiont-originating enzymes. We also found that the ATPS and APR active in the mitochondria of Euglena were inherited from its secondary, green algal plastid. Conclusion Our results reveal a complex history for the enzymes of the sulfate assimilation pathway. Whilst they shed light on the origin of some characterised novelties, such as a recently described novel isoform of APR from Bryophytes and the origin of the pathway active in the mitochondria of Euglenids, the many distinct and novel isoforms identified here represent an excellent resource for detailed biochemical studies of the enzyme structure/function relationships.

  3. On the Assimilation of Tree-Ring-Width Chronologies

    Science.gov (United States)

    Acevedo, Walter; Reich, Sebastian; Cubasch, Ulrich

    2015-04-01

    Data assimilation (DA) of climate proxy records is currently acknowledged as a promising approach to the paleoclimate reconstruction problem, with the potential to bring physical consistency to reconstructed fields. Previous paleo-DA studies have typically assumed a linear relationship between climate forcing and the resulting proxy data, whereas there exist growing evidence of complex, potentially non-linear, proxy formation processes. Accordingly, it appears natural to simulate the proxy response to climate in a more realistic fashion, by way of proxy-specific forward models. Following this train of thought, we investigate the assimilation of the most traditional climate proxy type, Tree-Ring-Width (TRW) chronologies, using the process-based tree-ring growth forward model Vaganov-Shashkin-Lite (VSL) and ensemble Kalman filter (EnKF) techniques. Used as observation operator, VSL's formulation implies three compounding, challenging features: (i) time averaging, (ii) "switching recording" of 2 variables and (iii) bounded response windows leading to "thresholded response". DA experiments involving VSL-based pseudo-TRW observations are performed first for a chaotic 2-scale dynamical system, used as a cartoon of the atmosphere-land system, and then for an atmospheric general circulation model of intermediate complexity. Our results reveal that VSL's nonlinearities may considerable deteriorate the performance of EnKF for Time-Averaged (TA) estimation, as compared to the utilization of a TA linear observation operator. Moreover, we show that this assimilation skill loss can be considerably reduced by embedding VSL's formulation into fuzzy logic theory, which fosters new interpretations of tree-ring growth limitation processes.

  4. Satellite-Scale Snow Water Equivalent Assimilation into a High-Resolution Land Surface Model

    Science.gov (United States)

    De Lannoy, Gabrielle J.M.; Reichle, Rolf H.; Houser, Paul R.; Arsenault, Kristi R.; Verhoest, Niko E.C.; Paulwels, Valentijn R.N.

    2009-01-01

    An ensemble Kalman filter (EnKF) is used in a suite of synthetic experiments to assimilate coarse-scale (25 km) snow water equivalent (SWE) observations (typical of satellite retrievals) into fine-scale (1 km) model simulations. Coarse-scale observations are assimilated directly using an observation operator for mapping between the coarse and fine scales or, alternatively, after disaggregation (re-gridding) to the fine-scale model resolution prior to data assimilation. In either case observations are assimilated either simultaneously or independently for each location. Results indicate that assimilating disaggregated fine-scale observations independently (method 1D-F1) is less efficient than assimilating a collection of neighboring disaggregated observations (method 3D-Fm). Direct assimilation of coarse-scale observations is superior to a priori disaggregation. Independent assimilation of individual coarse-scale observations (method 3D-C1) can bring the overall mean analyzed field close to the truth, but does not necessarily improve estimates of the fine-scale structure. There is a clear benefit to simultaneously assimilating multiple coarse-scale observations (method 3D-Cm) even as the entire domain is observed, indicating that underlying spatial error correlations can be exploited to improve SWE estimates. Method 3D-Cm avoids artificial transitions at the coarse observation pixel boundaries and can reduce the RMSE by 60% when compared to the open loop in this study.

  5. A THEORETICAL STUDY ON SIMPLIFIED KALMAN FILTER IN DATA ASSIMILATION

    Institute of Scientific and Technical Information of China (English)

    Ma Zhai-pu; Huang Da-ji; Zhang Ben-zhao

    2003-01-01

    In this paper, we put forward a new method to reduce the calculation amount of the gain matrix of Kalman filter in data assimilation. We rewrite the vector describing the total state variables with two vectors whose dimensions are small and thus obtain the main parts and the trivial parts of the state variables. On the basis of the rewrittten formula, we not only develop a reduced Kalman filter scheme, but also obtain the transition equations about truncation errors, with which the validity of the main parts acting for the total state variables can be evaluated quantitatively. The error transition equations thus offer an indirect testimony to the rationality of the main parts.

  6. Effect of ozone on growth and assimilate partitioning in parsley

    Energy Technology Data Exchange (ETDEWEB)

    Oshima, R.J.; Bennett, J.P.; Braegelmann, P.K.

    1978-05-01

    Parsley (Petroselinum crispum (Mill.) Nym. cv. Banquet) incurred leaf injury, reduced growth, and altered assimilate partitioning after exposures to 20 pphm ozone. Total plant dry weight and root dry weight were decreased 23% and 43% respectively, with little effect on leaves. The relative growth rate of fumigated plants was reduced after the initial ozone exposure but leveled off at a steady state above that of the control plants when plant dry weights reached about 4.5 g. Ozone appeared to have its greatest effect on growth during initial exposures. 15 references, 3 figures, 1 table.

  7. On the variational data assimilation problem solving and sensitivity analysis

    Science.gov (United States)

    Arcucci, Rossella; D'Amore, Luisa; Pistoia, Jenny; Toumi, Ralf; Murli, Almerico

    2017-04-01

    We consider the Variational Data Assimilation (VarDA) problem in an operational framework, namely, as it results when it is employed for the analysis of temperature and salinity variations of data collected in closed and semi closed seas. We present a computing approach to solve the main computational kernel at the heart of the VarDA problem, which outperforms the technique nowadays employed by the oceanographic operative software. The new approach is obtained by means of Tikhonov regularization. We provide the sensitivity analysis of this approach and we also study its performance in terms of the accuracy gain on the computed solution. We provide validations on two realistic oceanographic data sets.

  8. ASSIMILATION OF DOPPLER RADAR DATA INTO NUMERICAL WEATHER MODELS

    Energy Technology Data Exchange (ETDEWEB)

    Chiswell, S.; Buckley, R.

    2009-01-15

    During the year 2008, the United States National Weather Service (NWS) completed an eight fold increase in sampling capability for weather radars to 250 m resolution. This increase is expected to improve warning lead times by detecting small scale features sooner with increased reliability; however, current NWS operational model domains utilize grid spacing an order of magnitude larger than the radar data resolution, and therefore the added resolution of radar data is not fully exploited. The assimilation of radar reflectivity and velocity data into high resolution numerical weather model forecasts where grid spacing is comparable to the radar data resolution was investigated under a Laboratory Directed Research and Development (LDRD) 'quick hit' grant to determine the impact of improved data resolution on model predictions with specific initial proof of concept application to daily Savannah River Site operations and emergency response. Development of software to process NWS radar reflectivity and radial velocity data was undertaken for assimilation of observations into numerical models. Data values within the radar data volume undergo automated quality control (QC) analysis routines developed in support of this project to eliminate empty/missing data points, decrease anomalous propagation values, and determine error thresholds by utilizing the calculated variances among data values. The Weather Research and Forecasting model (WRF) three dimensional variational data assimilation package (WRF-3DVAR) was used to incorporate the QC'ed radar data into input and boundary conditions. The lack of observational data in the vicinity of SRS available to NWS operational models signifies an important data void where radar observations can provide significant input. These observations greatly enhance the knowledge of storm structures and the environmental conditions which influence their development. As the increase in computational power and availability has

  9. The HYCOM (HYbrid Coordinate Ocean Model) Data Assimilative System

    Science.gov (United States)

    2007-06-01

    Harley E. Hurlburt, Ole Martin Smedstad, George R. Halliwell, Patrick J. Hogan, Alan J. Wallcraft, Remy Baraille, Rainer Bleck 5.. TASK NUMBER 5f. WORK...assimilative system Eric P. Chassignet a,*, Harley E. Hurlburt b Ole Martin Smedstad C George R. Halliwell a Patrick J. Hogan b, Alan J. Wallcraft b...coordinate. J. Comput. Phys. Large, W.G., McWilliams , J.C., Doney, S.C., 1994. Oceanic vertical 115, 228-244. mixing: a review and a model with a nonlocal

  10. Abscisic acid and assimilate partitioning during seed development.

    OpenAIRE

    Bruijn, de, NG Dick

    1993-01-01

    This thesis describes the influence of abscisic acid (ABA) on the transport of assimilates to seeds and the deposition of reserves in seeds. It is well-known from literature that ABA accumulates in seeds during development, and that ABA concentrations in seeds correlate rather well with seed size and seed growth rates. However, since ABA is at least partly synthesized in the leaves and transported to the seeds via the phloem, a correlation between ABA levels and growth rate can easily be expl...

  11. The impact of T-TREC-retrieved wind and radial velocity data assimilation using EnKF and effects of assimilation window on the analysis and prediction of Typhoon Jangmi (2008)

    Science.gov (United States)

    Wang, Mingjun; Xue, Ming; Zhao, Kun

    2016-01-01

    This study examines the relative impact of assimilating T-TREC-retrieved winds (VTREC) versus radial velocity (Vr) on the analysis and forecast of Typhoon Jangmi (2008) using an ensemble Kalman filter (EnKF). The VTREC and Vr data at 30 min intervals are assimilated into the ARPS model at 3 km grid spacing over four different assimilation windows that cover, respectively, 0000-0200, 0200-0400, 0400-0600, and 0000-0600 UTC, 28 September 2008. The assimilation of VTREC data produces better analyses of the typhoon structure and intensity than the assimilation of Vr data during the earlier assimilation windows, but during the later assimilation windows when the coverage of Vr data on the typhoon from four Doppler radars is much improved, the assimilation of Vr outperforms VTREC data. The combination of VTREC and Vr data, either by assimilating both VTREC and Vr data in all cycles or by assimilating VTREC in the first cycle and Vr in the remaining cycles (labeled VTFVR), further improves the analyses of the typhoon structure and intensity compared to assimilating VTREC or Vr data alone. Quantitative verifications of 24 h forecasts of the typhoon show that the VTFVR assimilation experiments produces forecasts that best match the best track data and also have the highest precipitation prediction skills. The track forecast errors in experiment that assimilate VTREC data through the later cycles are the largest. The behaviors are discussed based on the coverage, information content, and accuracy of the various forms of data.

  12. Assimilation of Quality Controlled AIRS Temperature Profiles using the NCEP GFS

    Science.gov (United States)

    Susskind, Joel; Reale, Oreste; Iredell, Lena; Rosenberg, Robert

    2013-01-01

    We have previously conducted a number of data assimilation experiments using AIRS Version-5 quality controlled temperature profiles as a step toward finding an optimum balance of spatial coverage and sounding accuracy with regard to improving forecast skill. The data assimilation and forecast system we used was the Goddard Earth Observing System Model , Version-5 (GEOS-5) Data Assimilation System (DAS), which represents a combination of the NASA GEOS-5 forecast model with the National Centers for Environmental Prediction (NCEP) operational Grid Point Statistical Interpolation (GSI) global analysis scheme. All analyses and forecasts were run at a 0.5deg x 0.625deg spatial resolution. Data assimilation experiments were conducted in four different seasons, each in a different year. Three different sets of data assimilation experiments were run during each time period: Control; AIRS T(p); and AIRS Radiance. In the "Control" analysis, all the data used operationally by NCEP was assimilated, but no AIRS data was assimilated. Radiances from the Aqua AMSU-A instrument were also assimilated operationally by NCEP and are included in the "Control". The AIRS Radiance assimilation adds AIRS observed radiance observations for a select set of channels to the data set being assimilated, as done operationally by NCEP. In the AIRS T(p) assimilation, all information used in the Control was assimilated as well as Quality Controlled AIRS Version-5 temperature profiles, i.e., AIRS T(p) information was substituted for AIRS radiance information. The AIRS Version-5 temperature profiles were presented to the GSI analysis as rawinsonde profiles, assimilated down to a case-by-case appropriate pressure level p(sub best) determined using the Quality Control procedure. Version-5 also determines case-by-case, level-by-level error estimates of the temperature profiles, which were used as the uncertainty of each temperature measurement. These experiments using GEOS-5 have shown that forecasts

  13. Assimilation of drifter observations for the reconstruction of eulerian circulation field.

    Science.gov (United States)

    Molcard, A.; Ozgokmen, T.; Piterbarg, L.; Griffa, A.

    2003-04-01

    In light of the increasing number of drifting buoys in the ocean, and recent advances in the realism of ocean general circulation models toward oceanic forecasting, the problem of assimilation of Lagrangian observations data in Eulerian models is investigated. A new and general rigorous approach is developed based on optimal interpolation methods, which takes into account directly the Lagrangian nature of the observations. An idealized version of this general formulation is tested in the framework of identical twin-experiments using a reduced-gravity, quasi-geostrophic model. An extensive study is conducted to quantify the effectiveness of Lagrangian data assimilation as a function of the number of drifters, the frequency of assimilation and uncertainties associated with the forcing functions driving the ocean model. The performance of the Lagrangian assimilation technique is also compared to that of conventional methods of assimilating drifters as moving current meters, and assimilation of Eulerian data, such as fixed-point velocities. Overall the results are very favorable for the assimilation of Lagrangian observations to improve the Eulerian velocity field in ocean models. The results of our assimilation twin experiments imply an optimal sampling frequency for oceanic Lagrangian instruments in the range of 20-50% of the Lagrangian integral time scale of the flow field. The method is extended to primitive equation ocean models by using a dynamical relationship between velocity components and layer thickness based on geostrophy. The method is implemented in an idealized MICOM of midlatitude circulation, and performances of three different techniques, Pseudo-Lagrangian OI, Lagrangian OI and Pseudo-Lagrangian Kalman Filter (based on Chin et al., 1999) are compared using a comprehensive set of experiments. The main finding of this study is that two different strategies of data assimilation are simultaneously supported: (i) the strategy of adopting well

  14. Establishing the Framework for Land Data Assimilation of GRACE Terrestrial Water Storage Information

    Science.gov (United States)

    Sakumura, C.; Bettadpur, S. V.; Yang, Z. L.; Save, H.; McCullough, C.

    2015-12-01

    Assimilation of terrestrial water storage (TWS) data from the Gravity Recovery and Climate Experiment (GRACE) mission into current land surface models can correct model deficiencies due to errors in the model structure, atmospheric forcing datasets, parameters, etc. However, the assimilation process is complicated by spatial and temporal resolution discrepancies between the model and observational datasets, characterization of the error in each, and limitations of the algorithms used to calculate and update the model state. This study aims to establish a framework for hydrological data assimilation with GRACE. GRACE is an independent and accurate but coarse resolution terrestrial water storage dataset. While the models cannot attain the accuracy of GRACE, they are effective in interpretation and downscaling of the product and providing continuity over space and time. Accurate assimilation of GRACE TWS into LSMs thus will take the best characteristics of each and create a combined product that outperforms each individual source. More specifically, this framework entails a comprehensive analysis of the deficiencies and potential improvements of the satellite data products, the assimilation procedures and error characterization, and assimilation effectiveness. A daily sliding window mascon GRACE TWS product, presented previously, was developed to reduce smoothing in time and space during assimilation into the Community Land Model 4.0. The Ensemble Kalman Filter assimilation algorithms are analyzed and adapted for use with the new products, GRACE error information, and model characteristics. Additional assimilation tools such as Gaspari-Cohn localization and ensemble inflation are implemented and tuned for the model and observation properties. Analysis of the observational data, model data, sensitivity and effectiveness of the assimilation routines, and the assimilated results is done through regional comparison with independent in-situ datasets and external model

  15. Dynamic calibration of agent-based models using data assimilation.

    Science.gov (United States)

    Ward, Jonathan A; Evans, Andrew J; Malleson, Nicolas S

    2016-04-01

    A widespread approach to investigating the dynamical behaviour of complex social systems is via agent-based models (ABMs). In this paper, we describe how such models can be dynamically calibrated using the ensemble Kalman filter (EnKF), a standard method of data assimilation. Our goal is twofold. First, we want to present the EnKF in a simple setting for the benefit of ABM practitioners who are unfamiliar with it. Second, we want to illustrate to data assimilation experts the value of using such methods in the context of ABMs of complex social systems and the new challenges these types of model present. We work towards these goals within the context of a simple question of practical value: how many people are there in Leeds (or any other major city) right now? We build a hierarchy of exemplar models that we use to demonstrate how to apply the EnKF and calibrate these using open data of footfall counts in Leeds.

  16. Local Ensemble Kalman Particle Filters for efficient data assimilation

    CERN Document Server

    Robert, Sylvain

    2016-01-01

    Ensemble methods such as the Ensemble Kalman Filter (EnKF) are widely used for data assimilation in large-scale geophysical applications, as for example in numerical weather prediction (NWP). There is a growing interest for physical models with higher and higher resolution, which brings new challenges for data assimilation techniques because of the presence of non-linear and non-Gaussian features that are not adequately treated by the EnKF. We propose two new localized algorithms based on the Ensemble Kalman Particle Filter (EnKPF), a hybrid method combining the EnKF and the Particle Filter (PF) in a way that maintains scalability and sample diversity. Localization is a key element of the success of EnKFs in practice, but it is much more challenging to apply to PFs. The algorithms that we introduce in the present paper provide a compromise between the EnKF and the PF while avoiding some of the problems of localization for pure PFs. Numerical experiments with a simplified model of cumulus convection based on a...

  17. A retrieval strategy for interactive ensemble data assimilation

    CERN Document Server

    Hoffman, Ross N

    2010-01-01

    As an alternative to either directly assimilating radiances or the naive use of retrieved profiles (of temperature, humidity, aerosols, and chemical species), a strategy is described that makes use of the so-called averaging kernel (AK) and other information from the retrieval process. This AK approach has the potential to improve the use of remotely sensed observations of the atmosphere. First, we show how to use the AK and the retrieval noise covariance to transform the retrieved quantities into observations that are unbiased and have uncorrelated errors, and to eliminate both the smoothing inherent in the retrieval process and the effect of the prior. Since the effect of the prior is removed, any prior, including the forecast from the data assimilation cycle can be used. Then we show how to transform this result into EOF space, when a truncated EOF series has been used in the retrieval process. This provides a degree of data compression and eliminates those transformed variables that have very small inform...

  18. Conundrum of an Immigrant: Assimilation versus Cultural Preservation

    Directory of Open Access Journals (Sweden)

    Joanna Diane CAYTAS

    2012-11-01

    Full Text Available As immigration continues to describe the reality of virtually all industrialized countries, the discourse about its phenomenology and permutations of character as well as policy responses in open, industrialized and market-driven societies related to immigration continue to be among the most heavily researched issues as they drive social and demographic change in significant ways. The fundamental polarity remains between the traditional model of assimilation as compared to the cultural preservation under various models of multiculturalism – aside, of course, from hybrid forms and structuralist approaches. This article examines broad issues of cultural identity, bilingualism, the benefits of membership in a minority group, the changing and increasingly relevant role of religion (primarily of Islam, education and intermarriage, and the significant deviations from the legacy culture minority groups sometimes develop in the process of acculturation without making a full transition to majority culture. At a time when economic benefits of assimilation appear to be increasingly less controlling in struggles for cultural identity and immigrant rights, a number of paradoxes becomes visible only by taking a historical view over the last twenty years at both the American and European experiences to understand socio-political backlashes from majority voters as well as the immigrant responses thereto.

  19. An explicit four-dimensional variational data assimilation method

    Institute of Scientific and Technical Information of China (English)

    QIU ChongJian; ZHANG Lei; SHAO AiMei

    2007-01-01

    A new data assimilation method called the explicit four-dimensional variational (4DVAR) method is proposed. In this method, the singular value decomposition (SVD) is used to construct the orthogonal basis vectors from a forecast ensemble in a 4D space. The basis vectors represent not only the spatial structure of the analysis variables but also the temporal evolution. After the analysis variables are expressed by a truncated expansion of the basis vectors in the 4D space, the control variables in the cost function appear explicitly, so that the adjoint model, which is used to derive the gradient of cost function with respect to the control variables, is no longer needed. The new technique significantly simplifies the data assimilation process. The advantage of the proposed method is demonstrated by several experiments using a shallow water numerical model and the results are compared with those of the conventional 4DVAR. It is shown that when the observation points are very dense, the conventional 4DVAR is better than the proposed method. However, when the observation points are sparse, the proposed method performs better. The sensitivity of the proposed method with respect to errors in the observations and the numerical model is lower than that of the conventional method.

  20. An explicit four-dimensional variational data assimilation method

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    A new data assimilation method called the explicit four-dimensional variational (4DVAR) method is proposed. In this method, the singular value decomposition (SVD) is used to construct the orthogonal basis vectors from a forecast ensemble in a 4D space. The basis vectors represent not only the spatial structure of the analysis variables but also the temporal evolution. After the analysis variables are ex-pressed by a truncated expansion of the basis vectors in the 4D space, the control variables in the cost function appear explicitly, so that the adjoint model, which is used to derive the gradient of cost func-tion with respect to the control variables, is no longer needed. The new technique significantly simpli-fies the data assimilation process. The advantage of the proposed method is demonstrated by several experiments using a shallow water numerical model and the results are compared with those of the conventional 4DVAR. It is shown that when the observation points are very dense, the conventional 4DVAR is better than the proposed method. However, when the observation points are sparse, the proposed method performs better. The sensitivity of the proposed method with respect to errors in the observations and the numerical model is lower than that of the conventional method.