WorldWideScience

Sample records for aspect pattern formation

  1. Mathematical aspects of pattern formation in biological systems

    CERN Document Server

    Wei, Juncheng

    2013-01-01

    This monograph is concerned with the mathematical analysis of patterns which are encountered in biological systems. It summarises, expands and relates results obtained in the field during the last fifteen years. It also links the results to biological applications and highlights their relevance to phenomena in nature. Of particular concern are large-amplitude patterns far from equilibrium in biologically relevant models.The approach adopted in the monograph is based on the following paradigms:• Examine the existence of spiky steady states in reaction-diffusion systems and select as observabl

  2. High Aspect Pattern Formation by Integration of Micro Inkjetting and Electroless Plating

    OpenAIRE

    Gian, P.W.; Shan, Xuechuan; Liang, Y. N.; Lok, B.K.; Lu, C. W.; Ooi, B. L.

    2008-01-01

    This paper reports on formation of high aspect micro patterns on low temperature co-fired ceramic (LTCC) substrates by integrating micro inkjetting with electroless plating. Micro inkjetting was realized by using an inkjetting printer that ejects ink droplets from a printhead. This printhead consists of a glass nozzle with a diameter of 50 micrometers and a piezoelectric transducer that is coated on the nozzle. The silver colloidal solution was inkjetted on a sintered CT800 ceramic substrate,...

  3. High Aspect Pattern Formation by Integration of Micro Inkjetting and Electroless Plating

    CERN Document Server

    Gian, P W; Liang, Y N; Lok, B K; Lu, C W; Ooi, B L

    2008-01-01

    This paper reports on formation of high aspect micro patterns on low temperature co-fired ceramic (LTCC) substrates by integrating micro inkjetting with electroless plating. Micro inkjetting was realized by using an inkjetting printer that ejects ink droplets from a printhead. This printhead consists of a glass nozzle with a diameter of 50 micrometers and a piezoelectric transducer that is coated on the nozzle. The silver colloidal solution was inkjetted on a sintered CT800 ceramic substrate, followed by curing at 200 degrees C for 60 minutes. As a result, the silver trace with a thickness of 200 nm was obtained. The substrate, with the ejected silver thin film as the seed layer, was then immersed into a preinitiator solution to coat a layer of palladium for enhancing the deposition of nickel. Electroless nickel plating was successfully conducted at a rate of 0.39 micrometers /min, and the thickness of traces was plated up to 84 micrometers. This study demonstrates that the integration of inkjetting with plat...

  4. Zonal flows and pattern formation

    International Nuclear Information System (INIS)

    The general aspects of zonal flow physics, their formation, damping and interplay with quasi two dimensional turbulence are explained in the context of magnetized plasmas and quasi-geostrophic fluids with an emphasis on formation and selection of spatial patterns. General features of zonal flows as they appear in planetary atmospheres, rotating convection experiments and fusion plasmas are reviewed. Detailed mechanisms for excitation and damping of zonal flows, and their effect on turbulence via shear decorrelation is discussed. Recent results on nonlocality and staircase formation are outlined. (topical review)

  5. Pattern formation during vasculogenesis.

    Science.gov (United States)

    Czirok, Andras; Little, Charles D

    2012-06-01

    Vasculogenesis, the assembly of the first vascular network, is an intriguing developmental process that yields the first functional organ system of the embryo. In addition to being a fundamental part of embryonic development, vasculogenic processes also have medical importance. To explain the organizational principles behind vascular patterning, we must understand how morphogenesis of tissue level structures can be controlled through cell behavior patterns that, in turn, are determined by biochemical signal transduction processes. Mathematical analyses and computer simulations can help conceptualize how to bridge organizational levels and thus help in evaluating hypotheses regarding the formation of vascular networks. Here, we discuss the ideas that have been proposed to explain the formation of the first vascular pattern: cell motility guided by extracellular matrix alignment (contact guidance), chemotaxis guided by paracrine and autocrine morphogens, and sprouting guided by cell-cell contacts. PMID:22692888

  6. Dynamic Aspects of Synapse Formation

    OpenAIRE

    McAllister, A. Kimberley

    2007-01-01

    The mammalian central nervous system (CNS) requires the proper formation of exquisitely precise circuits to function correctly. These neuronal circuits are assembled during development by the formation of synaptic connections between thousands of differentiating neurons. Proper synapse formation during childhood provides the substrate for cognition while improper formation or function of these synapses leads to neurodevelopmental disorders, including mental retardation and autism. Recent work...

  7. Pattern formation during vasculogenesis

    OpenAIRE

    Czirok, Andras; Little, Charles D.

    2012-01-01

    Vasculogenesis, the assembly of the first vascular network, is an intriguing developmental process that yields the first functional organ system of the embryo. In addition to being a fundamental part of embryonic development, vasculogenic processes also have medical importance. To explain the organizational principles behind vascular patterning, we must understand how morphogenesis of tissue level structures can be controlled through cell behavior patterns that, in turn, are determined by bio...

  8. Dynamics of interfacial pattern formation

    Science.gov (United States)

    Ben-Jacob, E.; Goldenfeld, N.; Langer, J. S.; Schon, G.

    1983-01-01

    A phenomenological model of dendritic solidification incorporating interfacial kinetics, crystalline anisotropy, and a local approximation for the dynamics of the thermal diffusion field is proposed. The preliminary results are in qualitative agreement with natural dendrite-like pattern formation.

  9. Pattern formations and oscillatory phenomena

    CERN Document Server

    Kinoshita, Shuichi

    2013-01-01

    Patterns and their formations appear throughout nature, and are studied to analyze different problems in science and make predictions across a wide range of disciplines including biology, physics, mathematics, chemistry, material science, and nanoscience. With the emergence of nanoscience and the ability for researchers and scientists to study living systems at the biological level, pattern formation research has become even more essential. This book is an accessible first of its kind guide for scientists, researchers, engineers, and students who require a general introduction to thi

  10. Pattern formation in optical resonators

    International Nuclear Information System (INIS)

    We review pattern formation in optical resonators. The emphasis is on 'particle-like' structures such as vortices or spatial solitons. On the one hand, similarities impose themselves with other fields of physics (condensed matter, phase transitions, particle physics, fluds/super fluids). On the other hand the feedback is led by the resonator mirrors to bi- and multi-stability of the spatial field structure, which is the basic ingredient for optical information processing. The spatial dimension or the 'parallelism' is the strength of optics compared to electronics (and will have to be employed to fully use the advantages optics offers in information processing). But even in the 'serial' processing tasks of telecoms (e.g. information buffering) spatial resonator solitons can do better than the schemes proposed so far-including 'slow light'. Pattern formation in optical resonators will likely be the key to brain-like information processing like cognition, learning and association; to complement the precise but limited algorithmic capabilities of electronic processing. But even in the short term it will be useful for solving serial optical processing problems. The prospects for technical uses of pattern formation in resonators are one motivation for this research. The fundamental similarities with other fields of physics, on the other hand, inspire transfer of concepts between fields; something that has always proven fruitful for gaining deeper insights or for solving technical problems

  11. Modeling generic aspects of ideal fibril formation

    Energy Technology Data Exchange (ETDEWEB)

    Michel, D., E-mail: denis.michel@live.fr [Universite de Rennes1-IRSET, Campus de Beaulieu Bat. 13, 35042 Rennes (France)

    2016-01-21

    Many different proteins self-aggregate into insoluble fibrils growing apically by reversible addition of elementary building blocks. But beyond this common principle, the modalities of fibril formation are very disparate, with various intermediate forms which can be reshuffled by minor modifications of physico-chemical conditions or amino-acid sequences. To bypass this complexity, the multifaceted phenomenon of fibril formation is reduced here to its most elementary principles defined for a linear prototype of fibril. Selected generic features, including nucleation, elongation, and conformational recruitment, are modeled using minimalist hypotheses and tools, by separating equilibrium from kinetic aspects and in vitro from in vivo conditions. These reductionist approaches allow to bring out known and new rudiments, including the kinetic and equilibrium effects of nucleation, the dual influence of elongation on nucleation, the kinetic limitations on nucleation and fibril numbers, and the accumulation of complexes in vivo by rescue from degradation. Overlooked aspects of these processes are also pointed: the exponential distribution of fibril lengths can be recovered using various models because it is attributable to randomness only. It is also suggested that the same term “critical concentration” is used for different things, involved in either nucleation or elongation.

  12. The reliance of insolation pattern on surface aspect

    International Nuclear Information System (INIS)

    The Sun's radiated energy is an important source in realizing the green technology concept construction. When interacting with the atmosphere and objects on the Earth's surface incoming solar radiation (insolation) will create insolation patterns that are ambiguous and as a result need to be investigated further. This paper explores the insolation pattern and ambiguities against topographic surfaces in the context of direct, diffuse, and reflectance irradiance. The topography is modeled from LiDAR data as Digital Surface Model (DSM) and Digital Terrain Model (DTM). The generated DSM and DTM were converted to Triangular Irregular Network (TIN) format within the Arc GIS environment before the insolation pattern could be visualized. The slope and aspect of the topography has an impact on the insolation which is the emphasis of this paper. The main outcome from the study is the insolation map and plots of relationship between the insolation and surface aspect. The findings from this study should contribute to the sustainable practices of green building technology

  13. Towards a pattern language for aspect-based design

    OpenAIRE

    Bynens, Maarten; Joosen, Wouter

    2009-01-01

    With the maturation and widespread adoption of AOSD comes the need for patterns and best practices to solve recurring problems. Such patterns have been documented in different publications. Besides a conclusive catalog, a system to relate the patterns and drive the process of pattern selection would bear significant benefits. In this position paper, we designate the road towards a pattern language for aspect-based design and describe the initial steps.

  14. Pattern Formation by Competition: A Biological Example

    OpenAIRE

    M. Bezzi; Ciliberto, A.; A.Mengoni

    1999-01-01

    We present a simple model based on a reaction-diffusion equation to explain pattern formation in a multicellular bacterium (Streptomyces). We assume competition for resources as the basic mechanism that leads to pattern formation; in particular we are able to reproduce the spatial pattern formed by bacterial aerial mycelium in the case of growth in minimal (low resources) and maximal (large resources) culture media.

  15. Separation vortices and pattern formation

    DEFF Research Database (Denmark)

    Andersen, Anders Peter; Bohr, Tomas; Schnipper, Teis

    2010-01-01

    -time evolution of the sand ripple pattern, which has the surprising features that it breaks the local sand conservation and has long-range interaction, features that can be underpinned by experiments. Very similar vortex dynamics takes place around oscillating structures such as wings and fins. Here, we present...

  16. Pattern formation in quantum networks

    Science.gov (United States)

    Kim, Ilki; Mahler, Günter

    1999-03-01

    We investigate the iteration of a sequence of local and pair unitary transformations (quantum gate approximation), which can be interpreted to result from a Turing-head (pseudo-spin S) rotating along a closed Turing-tape (M additional pseudo-spins). The dynamical evolution of the Bloch-vector of S, which can be decomposed into 2M primitive pure state Turing-head trajectories, gives rise to fascinating geometrical patterns reflecting the entanglement between head and tape. For specific initial states ("input"), these patterns ("output") can be easily calculated for any tape size. We thus show intuitive examples for quantum parallelism and, at the same time, means for local testing of quantum network dynamics.

  17. Chondrocyte growth dynamics and spatial pattern formation

    OpenAIRE

    Palumberi, Viviana

    2010-01-01

    In this thesis we study the generation of patterns in cell culture refering to the important work of Elsdale where fibroblast cultures were analyzed to investigate how densely packed cells organize. A mathematical model was introduced in Edelstein-Keshet and Ermentrout (1990) to prove that the pattern formation can be caused by the mere interactions of individual cells, although it is a population phenomena. Until then the formation of structures was only attributed to other m...

  18. Blood drop patterns: Formation and applications.

    Science.gov (United States)

    Chen, Ruoyang; Zhang, Liyuan; Zang, Duyang; Shen, Wei

    2016-05-01

    The drying of a drop of blood or plasma on a solid substrate leads to the formation of interesting and complex patterns. Inter- and intra-cellular and macromolecular interactions in the drying plasma or blood drop are responsible for the final morphologies of the dried patterns. Changes in these cellular and macromolecular components in blood caused by diseases have been suspected to cause changes in the dried drop patterns of plasma and whole blood, which could be used as simple diagnostic tools to identify the health of humans and livestock. However, complex physicochemical driving forces involved in the pattern formation are not fully understood. This review focuses on the scientific development in microscopic observations and pattern interpretation of dried plasma and whole blood samples, as well as the diagnostic applications of pattern analysis. Dried drop patterns of plasma consist of intricate visible cracks in the outer region and fine structures in the central region, which are mainly influenced by the presence and concentration of inorganic salts and proteins during drying. The shrinkage of macromolecular gel and its adhesion to the substrate surface have been thought to be responsible for the formation of the cracks. Dried drop patterns of whole blood have three characteristic zones; their formation as functions of drying time has been reported in the literature. Some research works have applied engineering treatment to the evaporation process of whole blood samples. The sensitivities of the resultant patterns to the relative humidity of the environment, the wettability of the substrates, and the size of the drop have been reported. These research works shed light on the mechanisms of spreading, evaporation, gelation, and crack formation of the blood drops on solid substrates, as well as on the potential applications of dried drop patterns of plasma and whole blood in diagnosis. PMID:26988066

  19. Additional aspects of facies determination of the Souza Formation

    International Nuclear Information System (INIS)

    By means of geochemical analysis of total sample and trace elements, x-ray and DTA investigation of the clay fractions, and microfanes study, obtained by the facies determination of the Souza Formation, some additional aspects giving evidence of the sequence of events responsable by origin, deposition and formation of sediments of this middle unit of the Rio do Peixe group were established. (Author)

  20. Pattern Formation in a Bacterial Colony Model

    OpenAIRE

    2013-01-01

    We investigate the spatiotemporal dynamics of a bacterial colony model. Based on the stability analysis, we derive the conditions for Hopf and Turing bifurcations. Furthermore, we present novel numerical evidence of time evolution of patterns controlled by parameters in the model and find that the model dynamics exhibit a diffusion controlled formation growth to spots, holes and stripes pattern replication, which show that the bacterial colony model is useful in revealing the spatial predatio...

  1. Pattern formation with a conservation law

    OpenAIRE

    Winterbottom, David Mark

    2006-01-01

    The evolution of many pattern-forming systems is strongly influenced by the presence of a conserved quantity. Diverse physical phenomena such as magnetoconvection, rotating fluid convection, binary fluid convection, vibrated granular and fluid layers, filament dynamics and sandbank formation, all possess a conservation law which plays a central role in their nonlinear dynamics. In this thesis, this influence of a conserved quantity is examined through analyses of three distinct pattern-form...

  2. Pattern Formation in a Bacterial Colony Model

    Directory of Open Access Journals (Sweden)

    Xinze Lian

    2014-01-01

    Full Text Available We investigate the spatiotemporal dynamics of a bacterial colony model. Based on the stability analysis, we derive the conditions for Hopf and Turing bifurcations. Furthermore, we present novel numerical evidence of time evolution of patterns controlled by parameters in the model and find that the model dynamics exhibit a diffusion controlled formation growth to spots, holes and stripes pattern replication, which show that the bacterial colony model is useful in revealing the spatial predation dynamics in the real world.

  3. Transverse optical and atomic pattern formation

    CERN Document Server

    Schmittberger, Bonnie L

    2016-01-01

    The study of transverse optical pattern formation has been studied extensively in nonlinear optics, with a recent experimental interest in studying the phenomenon using cold atoms, which can undergo real-space self-organization. Here, we describe our experimental observation of pattern formation in cold atoms, which occurs using less than 1 microWatt of applied power. We show that the optical patterns and the self-organized atomic structures undergo continuous symmetry-breaking, which is characteristic of non-equilibrium phenomena in a multimode system. To theoretically describe pattern formation in cold atoms, we present a self-consistent model that allows for tight atomic bunching in the applied optical lattice. We derive the nonlinear refractive index of a gas of multi-level atoms in an optical lattice, and we derive the threshold conditions under which pattern formation occurs. We show that, by using small detunings and sub-Doppler temperatures, one achieves two orders of magnitude reduced intensity thres...

  4. Pattern formation in Pseudomonas aeruginosa biofilms

    DEFF Research Database (Denmark)

    Parsek, Matthew R.; Tolker-Nielsen, Tim

    2008-01-01

    Bacteria are capable of forming elaborate multicellular communities called biofilms. Pattern formation in biofilms depends on cell proliferation and cellular migration in response to the available nutrients and other external cues, as well as on self-generated intercellular signal molecules and the...... production of an extracellular matrix that serves as a structural 'scaffolding' for the biofilm cells. Pattern formation in biofilms allows cells to position themselves favorably within nutrient gradients and enables buildup and maintenance of physiologically distinct subpopulations, which facilitates...... survival of one or more subpopulations upon environmental insult, and therefore plays an important role in the innate tolerance displayed by biofilms toward adverse conditions....

  5. Chaotic Turing pattern formation in spatiotemporal systems

    Institute of Scientific and Technical Information of China (English)

    XIAO Jing-hua; LI Hai-hong; YANG Jun-zhong; HU Gang

    2006-01-01

    The problem of Turing pattern formation has attracted much attention in nonlinear science as well as physics,chemistry and biology.So far spatially ordered Turing patterns have been observed in stationary and oscillatory media only.In this paper we find that spatially ordered Turing patterns exist in chaotic extended systems.And chaotic Turing patterns are strikingly rich and surprisingly beautiful with their space structures.These findings are in sharp contrast with the intuition of pseudo-randomness of chaos.The richness and beauty of the chaotic Turing patterns are attributed to a large variety of symmetry properties realized by various types of self-organizations of partial chaos synchronizations.

  6. Spontaneous pattern formation in an acoustical resonator

    OpenAIRE

    Sanchez-Morcillo, Victor J.

    2003-01-01

    A dynamical system of equations describing parametric sound generation (PSG) in a dispersive large aspect ratio resonator is derived. The model generalizes previously proposed descriptions of PSG by including diffraction effects, and is analogous to the model used in theoretical studies of optical parametric oscillation. A linear stability analysis of the solution below the threshold of subharmonic generation reveals the existence of a pattern forming instability, which is confirmed by numeri...

  7. Taming contact line instability for pattern formation

    Science.gov (United States)

    Deblais, A.; Harich, R.; Colin, A.; Kellay, H.

    2016-08-01

    Coating surfaces with different fluids is prone to instability producing inhomogeneous films and patterns. The contact line between the coating fluid and the surface to be coated is host to different instabilities, limiting the use of a variety of coating techniques. Here we take advantage of the instability of a receding contact line towards cusp and droplet formation to produce linear patterns of variable spacings. We stabilize the instability of the cusps towards droplet formation by using polymer solutions that inhibit this secondary instability and give rise to long slender cylindrical filaments. We vary the speed of deposition to change the spacing between these filaments. The combination of the two gives rise to linear patterns into which different colloidal particles can be embedded, long DNA molecules can be stretched and particles filtered by size. The technique is therefore suitable to prepare anisotropic structures with variable properties.

  8. N7 logic via patterning using templated DSA: implementation aspects

    Science.gov (United States)

    Bekaert, J.; Doise, J.; Gronheid, R.; Ryckaert, J.; Vandenberghe, G.; Fenger, G.; Her, Y. J.; Cao, Y.

    2015-07-01

    In recent years, major advancements have been made in the directed self-assembly (DSA) of block copolymers (BCP). Insertion of DSA for IC fabrication is seriously considered for the 7 nm node. At this node the DSA technology could alleviate costs for multiple patterning and limit the number of masks that would be required per layer. At imec, multiple approaches for inserting DSA into the 7 nm node are considered. One of the most straightforward approaches for implementation would be for via patterning through templated DSA; a grapho-epitaxy flow using cylindrical phase BCP material resulting in contact hole multiplication within a litho-defined pre-pattern. To be implemented for 7 nm node via patterning, not only the appropriate process flow needs to be available, but also DSA-aware mask decomposition is required. In this paper, several aspects of the imec approach for implementing templated DSA will be discussed, including experimental demonstration of density effect mitigation, DSA hole pattern transfer and double DSA patterning, creation of a compact DSA model. Using an actual 7 nm node logic layout, we derive DSA-friendly design rules in a logical way from a lithographer's view point. A concrete assessment is provided on how DSA-friendly design could potentially reduce the number of Via masks for a place-and-routed N7 logic pattern.

  9. Sarcomeric pattern formation by actin cluster coalescence.

    Directory of Open Access Journals (Sweden)

    Benjamin M Friedrich

    Full Text Available Contractile function of striated muscle cells depends crucially on the almost crystalline order of actin and myosin filaments in myofibrils, but the physical mechanisms that lead to myofibril assembly remains ill-defined. Passive diffusive sorting of actin filaments into sarcomeric order is kinetically impossible, suggesting a pivotal role of active processes in sarcomeric pattern formation. Using a one-dimensional computational model of an initially unstriated actin bundle, we show that actin filament treadmilling in the presence of processive plus-end crosslinking provides a simple and robust mechanism for the polarity sorting of actin filaments as well as for the correct localization of myosin filaments. We propose that the coalescence of crosslinked actin clusters could be key for sarcomeric pattern formation. In our simulations, sarcomere spacing is set by filament length prompting tight length control already at early stages of pattern formation. The proposed mechanism could be generic and apply both to premyofibrils and nascent myofibrils in developing muscle cells as well as possibly to striated stress-fibers in non-muscle cells.

  10. Morphogenesis and pattern formation in biological systems experiments and models

    CERN Document Server

    Noji, Sumihare; Ueno, Naoto; Maini, Philip

    2003-01-01

    A central goal of current biology is to decode the mechanisms that underlie the processes of morphogenesis and pattern formation. Concerned with the analysis of those phenomena, this book covers a broad range of research fields, including developmental biology, molecular biology, plant morphogenesis, ecology, epidemiology, medicine, paleontology, evolutionary biology, mathematical biology, and computational biology. In Morphogenesis and Pattern Formation in Biological Systems: Experiments and Models, experimental and theoretical aspects of biology are integrated for the construction and investigation of models of complex processes. This collection of articles on the latest advances by leading researchers not only brings together work from a wide spectrum of disciplines, but also provides a stepping-stone to the creation of new areas of discovery.

  11. Femtosecond Laser Patterning of the Biopolymer Chitosan for Biofilm Formation

    Science.gov (United States)

    Estevam-Alves, Regina; Ferreira, Paulo Henrique Dias; Coatrini, Andrey C.; Oliveira, Osvaldo N.; Fontana, Carla Raquel; Mendonca, Cleber Renato

    2016-01-01

    Controlling microbial growth is crucial for many biomedical, pharmaceutical and food industry applications. In this paper, we used a femtosecond laser to microstructure the surface of chitosan, a biocompatible polymer that has been explored for applications ranging from antimicrobial action to drug delivery. The influence of energy density on the features produced on chitosan was investigated by optical and atomic force microscopies. An increase in the hydrophilic character of the chitosan surface was attained upon laser micromachining. Patterned chitosan films were used to observe Staphylococcus aureus (ATCC 25923) biofilm formation, revealing an increase in the biofilm formation in the structured regions. Our results indicate that fs-laser micromachining is an attractive option to pattern biocompatible surfaces, and to investigate basic aspects of the relationship between surface topography and bacterial adhesion. PMID:27548153

  12. Femtosecond Laser Patterning of the Biopolymer Chitosan for Biofilm Formation.

    Science.gov (United States)

    Estevam-Alves, Regina; Ferreira, Paulo Henrique Dias; Coatrini, Andrey C; Oliveira, Osvaldo N; Fontana, Carla Raquel; Mendonca, Cleber Renato

    2016-01-01

    Controlling microbial growth is crucial for many biomedical, pharmaceutical and food industry applications. In this paper, we used a femtosecond laser to microstructure the surface of chitosan, a biocompatible polymer that has been explored for applications ranging from antimicrobial action to drug delivery. The influence of energy density on the features produced on chitosan was investigated by optical and atomic force microscopies. An increase in the hydrophilic character of the chitosan surface was attained upon laser micromachining. Patterned chitosan films were used to observe Staphylococcus aureus (ATCC 25923) biofilm formation, revealing an increase in the biofilm formation in the structured regions. Our results indicate that fs-laser micromachining is an attractive option to pattern biocompatible surfaces, and to investigate basic aspects of the relationship between surface topography and bacterial adhesion. PMID:27548153

  13. Pattern Formation on Networks: from Localised Activity to Turing Patterns.

    Science.gov (United States)

    McCullen, Nick; Wagenknecht, Thomas

    2016-01-01

    Networks of interactions between competing species are used to model many complex systems, such as in genetics, evolutionary biology or sociology and knowledge of the patterns of activity they can exhibit is important for understanding their behaviour. The emergence of patterns on complex networks with reaction-diffusion dynamics is studied here, where node dynamics interact via diffusion via the network edges. Through the application of a generalisation of dynamical systems analysis this work reveals a fundamental connection between small-scale modes of activity on networks and localised pattern formation seen throughout science, such as solitons, breathers and localised buckling. The connection between solutions with a single and small numbers of activated nodes and the fully developed system-scale patterns are investigated computationally using numerical continuation methods. These techniques are also used to help reveal a much larger portion of of the full number of solutions that exist in the system at different parameter values. The importance of network structure is also highlighted, with a key role being played by nodes with a certain so-called optimal degree, on which the interaction between the reaction kinetics and the network structure organise the behaviour of the system. PMID:27273339

  14. Pattern Formation on Networks: from Localised Activity to Turing Patterns

    Science.gov (United States)

    McCullen, Nick; Wagenknecht, Thomas

    2016-06-01

    Networks of interactions between competing species are used to model many complex systems, such as in genetics, evolutionary biology or sociology and knowledge of the patterns of activity they can exhibit is important for understanding their behaviour. The emergence of patterns on complex networks with reaction-diffusion dynamics is studied here, where node dynamics interact via diffusion via the network edges. Through the application of a generalisation of dynamical systems analysis this work reveals a fundamental connection between small-scale modes of activity on networks and localised pattern formation seen throughout science, such as solitons, breathers and localised buckling. The connection between solutions with a single and small numbers of activated nodes and the fully developed system-scale patterns are investigated computationally using numerical continuation methods. These techniques are also used to help reveal a much larger portion of of the full number of solutions that exist in the system at different parameter values. The importance of network structure is also highlighted, with a key role being played by nodes with a certain so-called optimal degree, on which the interaction between the reaction kinetics and the network structure organise the behaviour of the system.

  15. Visualization of Mined Pattern and Its Human Aspects

    CERN Document Server

    Jain, Ratnesh Kumar; Kasana, Dr R S

    2009-01-01

    Researchers got success in mining the Web usage data effectively and efficiently. But representation of the mined patterns is often not in a form suitable for direct human consumption. Hence mechanisms and tools that can represent mined patterns in easily understandable format are utilized. Different techniques are used for pattern analysis, one of them is visualization. Visualization can provide valuable assistance for data analysis and decision making tasks. In the data visualization process, technical representations of web pages are replaced by user attractive text interpretations. Experiments with the real world problems showed that the visualization can significantly increase the quality and usefulness of web log mining results. However, how decision makers perceive and interact with a visual representation can strongly influence their understanding of the data as well as the usefulness of the visual presentation. Human factors therefore contribute significantly to the visualization process and should p...

  16. Pattern formation in SiSb system

    OpenAIRE

    Csik, A.; Erdelyi, G.; Langer, G A; Daroczi, L.; Beke, D. L.; Nyeki, J.; Erdelyi, Z.

    2009-01-01

    Thermal annealing of Si/Si1-xSbx/Si amorphous thin film tri-layer samples (x=18 and 24 at%Sb) under 100 bar Ar pressure results in an interesting pattern formation. In pictures, taken by means of cross-sectional transmission electron microscopy (TEM), stripe-shaped contrast, with three maxima, parallel with the interfaces can be seen. Secondary neutral mass spectrometer (SNMS) measurements revealed that the regions with different contrasts correspond to Sb-rich and Sb-depleted regions. Furthe...

  17. MEDICAL STUDENTS’ FEEDBACK ABOUT FORMATIVE ASSESSMENT PATTERN

    Directory of Open Access Journals (Sweden)

    Navajothi

    2016-03-01

    Full Text Available BACKGROUND Pharmacology is the toughest subject in the II MBBS syllabus. Students have to memorise a lot about the drugs’ name and classification. We are conducting internal assessment exams after completion of each system. Number of failures will be more than 60% in the internal assessments conducted during first six months of II MBBS course. AIM To assess the formative assessment pattern followed in our institution with the students’ feedback and modify the pattern according to the students’ feedback. SETTINGS & DESIGN Prospective Observational Study conducted at Department of Pharmacology, Government Sivagangai Medical College, Sivagangai, Tamil Nadu. MATERIALS AND METHODS Questionnaire was prepared and distributed to the 300 students of Government Sivagangai Medical College and feedback was collected. Data collected was analysed in Microsoft Excel 2007 version. RESULTS Received feedback from 274 students. Most (80% of the students wanted to attend the tests in all systems. Monthly assessment test was preferred by 47% of the students. Students who preferred to finish tests before holidays was 57%. Most (56% of the students preferred tests for 1 hour. Multiple choice question (MCQ type was preferred by 43%, which is not a routine question pattern. Only 7% preferred viva. Recall type of questions was preferred by 41% of the students. CONCLUSION In our institution, internal assessment is conducted as per the students’ mind setup. As the feedback has been the generally followed one, we will add MCQs in the forthcoming tests. Application type questions will be asked for more marks than Recall type of questions.

  18. Periodic Pattern Formation of Bacterial Colonies

    Science.gov (United States)

    Itoh, Hiroto; Wakita, Jun-ichi; Matsuyama, Tohey; Matsushita, Mitsugu

    1999-04-01

    We have experimentally investigated pattern formation of colonies ofbacterial species Proteus mirabilis, which is famous forforming concentric-ring-like colonies.The colony grows cyclically with the interface repeating an advance anda stop alternately on a surface of a solid agar medium.We distinguish three phases (initial lag phase, the followingmigration and consolidation phases that appear alternately) for the colony growth.When we cut a colony just behind a migrating front shortly after the migrationstarted, the migration ended earlier and the following consolidationlasted longer.However, the following cycles were not influenced by the cut, i.e., thephases of the migration and consolidation were not affected.Global chemical signals governing the colony formation from thecenter were not found to exist.We also quantitatively checked phase entrainment by letting two coloniescollide with each other and found that it does not take place in macroscopic scales.All these experimental results suggest that the most important factorfor the migration is the cell population density.

  19. Effects of patterned topography on biofilm formation

    Science.gov (United States)

    Vasudevan, Ravikumar

    2011-12-01

    Bacterial biofilms are a population of bacteria attached to each other and irreversibly to a surface, enclosed in a matrix of self-secreted polymers, among others polysaccharides, proteins, DNA. Biofilms cause persisting infections associated with implanted medical devices and hospital acquired (nosocomial) infections. Catheter-associated urinary tract infections (CAUTIs) are the most common type of nosocomial infections accounting for up to 40% of all hospital acquired infections. Several different strategies, including use of antibacterial agents and genetic cues, quorum sensing, have been adopted for inhibiting biofilm formation relevant to CAUTI surfaces. Each of these methods pertains to certain types of bacteria, processes and has shortcomings. Based on eukaryotic cell topography interaction studies and Ulva linza spore studies, topographical surfaces were suggested as a benign control method for biofilm formation. However, topographies tested so far have not included a systematic variation of size across basic topography shapes. In this study patterned topography was systematically varied in size and shape according to two approaches 1) confinement and 2) wetting. For the confinement approach, using scanning electron microscopy and confocal microscopy, orienting effects of tested topography based on staphylococcus aureus (s. aureus) (SH1000) and enterobacter cloacae (e. cloacae) (ATCC 700258) bacterial models were identified on features of up to 10 times the size of the bacterium. Psuedomonas aeruginosa (p. aeruginosa) (PAO1) did not show any orientational effects, under the test conditions. Another important factor in medical biofilms is the identification and quantification of phenotypic state which has not been discussed in the literature concerning bacteria topography characterizations. This was done based on antibiotic susceptibility evaluation and also based on gene expression analysis. Although orientational effects occur, phenotypically no difference

  20. Methodological Aspects of Formation of Chart of Accounts

    Directory of Open Access Journals (Sweden)

    Liliya Aleksandrovna Zimakova

    2015-03-01

    Full Text Available The article raises questions about the methodological aspects of the formation of the chart of accounts, which depend on the singularities of national accounting systems, the users' information needs, and the problems solved by the system. The study identified three types of charts of accounts: the chart of accounts oriented to financial accounting, which is based on the matrix method of building, classification of accounts is based on the principles of the balance sheet and the traditional definition of financial results; the chart of accounts, which assumes detailing the cost accounting and allocating additional classes of accounts to determine the financial results of the production; the chart of accounts of the integrated accounting, allowing the formation of multi-sector information and the data exchange between the accounted subsystems.

  1. Ecological aspects of the use of lost foam patterns

    Directory of Open Access Journals (Sweden)

    Z. Żółkiewicz

    2010-07-01

    Full Text Available The paper discusses some aspects of ecology in the use of lost foam patterns for piece production of large castings poured from ferrousalloys under the conditions of Metalodlew SA. Foundry. The technological processes used in the manufacture of castings are related with numerous hazards. Numerous problems requiring prompt solution occur also during the process of foundry mould pouring, to mention only various contaminants, air pollution, noise and other factors harmful to the human health and natural environment. Varioustechnological processes cause strenuous work conditions in foundry shops. Many of the publications that have appeared so far dealing withthe problems of environmental protection and hard work conditions in foundries [1, 2, 3, 4, 5, 6, 7, 8, 9] discuss in both general anddetailed way problems related with various pollutants, noise and other factors harmful to the human health and natural environment,responsible for hazards faced by foundry workers. Studies carried out by various R&D centres are mainly focussed on the problem of howto reduce the harmful effect of technological processes on the environment through modification of the already existing or development of new ecological and energy-saving materials and technologies. This paper shows the opportunities and threats resulting from the application of the Lost Foam Process in a foundry, which up to now has been using a more traditional technology.

  2. Pattern Formation in a Nonlocal Convective Fisher Equation

    International Nuclear Information System (INIS)

    We investigate the nonlocal convective Fisher equation and the conditions for pattern formation. We observe that the width of the influence function completely determines whether the pattern is present. (author)

  3. Turing pattern formation in the Brusselator system with nonlinear diffusion

    OpenAIRE

    Gambino, G.; Lombardo, M. C.; Sammartino, M.; Sciacca, V.

    2013-01-01

    In this work we investigate the effect of density dependent nonlinear diffusion on pattern formation in the Brusselator system. Through linear stability analysis of the basic solution we determine the Turing and the oscillatory instability boundaries. A comparison with the classical linear diffusion shows how nonlinear diffusion favors the occurrence of Turing pattern formation. We study the process of pattern formation both in 1D and 2D spatial domains. Through a weakly nonlinear multiple sc...

  4. Spontaneous pattern formation in an anti-ferromagnetic quantum gas

    OpenAIRE

    Kronjäger, Jochen; Becker, Christoph; Soltan-Panahi, Parvis; Bongs, Kai; Sengstock, Klaus

    2009-01-01

    Spontaneous pattern formation is a phenomenon ubiquitous in nature, examples ranging from Rayleigh-Benard convection to the emergence of complex organisms from a single cell. In physical systems, pattern formation is generally associated with the spontaneous breaking of translation symmetry and is closely related to other symmetry-breaking phenomena, of which (anti-)ferromagnetism is a prominent example. Indeed, magnetic pattern formation has been studied extensively in both solid-state mater...

  5. Word-formation aspects of proper names - Word-formation or name-formation?

    Czech Academy of Sciences Publication Activity Database

    Harvalík, Milan

    Cluj-Napoca: Mega, 2015 - (Felecan, O.), s. 37-43 ISBN 978-606-543-671-8. [Name and Naming /3./ Conventiona/Unconventional in Onomastics. Baia Mare (RO), 01.09.2015-03.09.2015] Institutional support: RVO:68378092 Keywords : proper names * common nouns * word-formation * name-formation * parasystemic formation Subject RIV: AI - Linguistics

  6. Features of the formation of the bodily aspect of gender identity in men

    Directory of Open Access Journals (Sweden)

    Harlanova M.M.

    2015-11-01

    Full Text Available The article examines the peculiarities of the bodily aspect of gender identity in men. The urgency of this work due to the fact that currently in Russia to study the influence of the bodily aspect to the whole structure of gender identity is given little attention. At the present time the problem of studying the physicality involved in domestic psychologists: Arina G. A., V. V. Nikolaev, A. S. Kostov, A. N. Borojevic, B. T. Sokolov, V. Yu., Baskakov, who agree in opinion on the necessity to study the influence of the morpho-biological patterns of gender identity, her social and personal "add-on" – of sex-role stereotypes, perceptions, behavior, preferences. However, studies supporting their interaction was not performed [7]. In the paper the following definitions: "gender identity", "gender", "differential socialization", "the Adonis complex". Produced comprehensive analysis of foreign sources for a detailed understanding of the studied phenomenon; analysis of the structural components and characteristics of the formation of the bodily aspect of gender identity in men with the help of specifically chosen tutorials. Discovered the distinctive features of the formation of the bodily aspect of gender identity in men and their reflection in sex-role behavior. We assume that men who are not satisfied with the perception of his own body, prone to distorted perceptions of sex-role images. The data obtained can provide the basis and prospects for development of programs of prevention, diagnostics and correction.

  7. Pattern formation by a moving morphogen source

    International Nuclear Information System (INIS)

    During Drosophila melanogaster oogenesis, the follicular epithelium that envelops the germline cyst gives rise to an elaborate eggshell, which houses the future embryo and mediates its interaction with the environment. A prominent feature of the eggshell is a pair of dorsal appendages, which are needed for embryo respiration. Morphogenesis of this structure depends on broad, a zinc-finger transcription factor, regulated by the EGFR pathway. While much has been learned about the mechanisms of broad regulation by EGFR, current understanding of processes that shape the spatial pattern of broad expression is incomplete. We propose that this pattern is defined by two different phases of EGFR activation: an early, posterior-to-anterior gradient of EGFR signaling sets the posterior boundary of broad expression, while the anterior boundary is set by a later phase of EGFR signaling, distributed in a dorsoventral gradient. This model can explain the wild-type pattern of broad in D. melanogaster, predicts how this pattern responds to genetic perturbations, and provides insight into the mechanisms driving diversification of eggshell patterning. The proposed model of the broad expression pattern can be used as a starting point for the quantitative analysis of a large number of gene expression patterns in Drosophila oogenesis

  8. Pattern formations in chaotic spatio-temporal systems

    Indian Academy of Sciences (India)

    Ying Zhang; Shihong Wang; Jinhua Xiao; Hilda A Cerdeira; S Chen; Gang Hu

    2005-06-01

    Pattern formations in chaotic spatio-temporal systems modelled by coupled chaotic oscillators are investigated. We focus on various symmetry breakings and different kinds of chaos synchronization–desynchronization transitions, which lead to certain types of spontaneous spatial orderings and the emergence of some typical ordered patterns, such as rotating wave patterns with splay phase ordering (orientational symmetry breaking) and partially synchronous standing wave patterns with in-phase ordering (translational symmetry breaking). General pictures of the global behaviors of pattern formations and transitions in coupled chaotic oscillators are provided.

  9. Pattern formation by vascular mesenchymal cells

    OpenAIRE

    Garfinkel, Alan; Tintut, Yin; Petrasek, Danny; Boström, Kristina; Demer, Linda L.

    2004-01-01

    In embryogenesis, immature mesenchymal cells aggregate and organize into patterned tissues. Later in life, a pathological recapitulation of this process takes place in atherosclerotic lesions, when vascular mesenchymal cells organize into trabecular bone tissue within the artery wall. Here we show that multipotential adult vascular mesenchymal cells self-organize in vitro into patterns that are predicted by a mathematical model based on molecular morphogens interacting in a reaction-diffusion...

  10. Pattern formation exhibited by biofilm formation within microfluidic chambers.

    Science.gov (United States)

    Cogan, N G; Donahue, M R; Whidden, Mark; De La Fuente, Leonardo

    2013-05-01

    This article investigates the dynamics of an important bacterial pathogen, Xylella fastidiosa, within artificial plant xylem. The bacterium is the causative agent of a variety of diseases that strike fruit-bearing plants including Pierce's disease of grapevine. Biofilm colonization within microfluidic chambers was visualized in a laboratory setting, showing robust, regular spatial patterning. We also develop a mathematical model, based on a multiphase approach that is able to capture the spacing of the pattern and points to the role of the exopolymeric substance as the main source of control of the pattern dynamics. We concentrate on estimating the attachment/detachment processes within the chamber because these are two mechanisms that have the potential to be engineered by applying various chemicals to prevent or treat the disease. PMID:23663829

  11. Pattern formation in inclined layer convection

    OpenAIRE

    Daniels, Karen E.; Bodenschatz, Eberhard

    1999-01-01

    We report experiments on thermally driven convection in an inclined layer of large aspect ratio in a fluid of Prandtl number $\\sigma \\approx 1$. We observed a number of new nonlinear, mostly spatio-temporally chaotic, states. At small angles of inclination we found longitudinal rolls, subharmonic oscillations, Busse oscillations, undulation chaos, and crawling rolls. At larger angles, in the vicinity of the transition from buoyancy- to shear-driven instability, we observed drifting transverse...

  12. Evolution of Web Applications with Aspect-Oriented Design Patterns

    DEFF Research Database (Denmark)

    Bebjak, Michal; Vranic, Valentino; Dolog, Peter

    2007-01-01

    It is more convenient to talk about changes in a domainspecific way than to formulate them at the programming construct level or-even worse-purely lexical level. Using aspect-oriented programming, changes can be modularized and made reapplicable. In this paper, selected change types in web applic...

  13. Pattern formation in arrays of chemical oscillators

    Indian Academy of Sciences (India)

    Neeraj Kumar Kamal

    2012-05-01

    We describe a simple model mimicking diffusively coupled chemical micro-oscillators. We characterize the rich variety of dynamical states emerging from the model under variation of time delay in coupling, coupling strength and boundary conditions. The spatiotemporal patterns obtained include clustering, mixed dynamics, inhomogeneous steady states and amplitude death. Further, under delay in coupling, the model yields transitions from phase to antiphase oscillations, reminiscent of that observed in experiments [M Toiya et al, J. Chem. Lett. 1, 1241 (2010)].

  14. Pattern formation in quantum Turing machines

    OpenAIRE

    Kim, ILki; Mahler, Guenter

    1999-01-01

    We investigate the iteration of a sequence of local and pair unitary transformations, which can be interpreted to result from a Turing-head (pseudo-spin $S$) rotating along a closed Turing-tape ($M$ additional pseudo-spins). The dynamical evolution of the Bloch-vector of $S$, which can be decomposed into $2^{M}$ primitive pure state Turing-head trajectories, gives rise to fascinating geometrical patterns reflecting the entanglement between head and tape. These machines thus provide intuitive ...

  15. Modulational instability and spontaneous pattern formation with incoherent white light

    International Nuclear Information System (INIS)

    Full Text:One of the most fundamentals phenomena in nonlinear dynamics is the spontaneous formation of ordered structures, known as pattern formation or Modulational instability. Essentially, modulational instability is a process in which a spatially homogeneous state of a nonlinear system is becoming unstable and small spatial perturbations with a specific periodicity are enhanced through the nonlinearity, until diffraction, dispersion or diffusion counterbalances the effect and a regular pattern is formed. In optics, modulational instability has been reported in many materials with diverse nonlinearities; however, until recently, pattern formation in nonlinear optical systems was studied with frilly coherent light. Several years ago a new concept was introduced, when spontaneous pattern formation was predicted and demonstrated to occur with quasi-monochromatic spatially incoherent beams. Here we report the first experimental observation of pattern formation with incoherent white light. We demonstrate that spatially and temporally incoherent beam, emanating from an incandescent light bulb and propagating in nonlinear medium, spontaneously break up to produce an ordered structure of 10-micron-thick filaments. We show that in this process, where all colors interact with each other, the whole temporal spectrum is collectively becoming unstable at a common threshold value of the nonlinearity and all wavelengths (temporal frequencies) ''lock'' to a single periodic pattern. Furthermore, we show that the spectrum of the pattern self-adjusts as the beam propagates in the nonlinear medium so that the contrast of the pattern is higher at shorter wavelengths, as predicted by our theoretical model

  16. Formation of colloidal semiconductor nanocrystals. The aspect of nucleation

    Energy Technology Data Exchange (ETDEWEB)

    Kudera, S.

    2007-08-17

    The present work describes different techniques to control some major parameters of colloidal nanocrystals. The individual techniques rely on the manipulation of the nucleation event. The sensitive control of the nanocrystals' size and shape is discussed. Furthermore the formation of hybrid nanocrystals composed of different materials is presented. The synthesis technique for the production of the different samples involves organic solvents and surfactants and reactions at elevated temperatures. The presence of magic size clusters offers a possibility to control the size of the nanocrystals even at very small dimensions. The clusters produced comprise ca. 100 atoms. In the case of CdSe, nanocrystals of this size emit a blue fluorescence and therefore extend the routinely accessible spectrum for this material over the whole visible range. Samples fluorescing in the spectral range from green to red are produced with standard recipes. In this work a reaction scheme for magic size clusters is presented and a theoretical model to explain the particular behaviour of their growth dynamics is discussed. The samples are investigated by optical spectroscopy, transmission electron microscopy, X-ray diffraction and elemental analysis. A method to form branched nanocrystals is discussed. The branching point is analysed by high resolution transmission electron microscopy and proves for the occurrence of a multiple twinned structure are strengthened by simulation of the observed patterns. Two different techniques to generate nanocrystals of this type are presented. The first relies on a seeded growth approach in which the nucleation of the second material is allowed only on de ned sites of the seeds. The second technique uses the tips of pre-formed nano-dumbbells as sacrificial domains. The material on the tips is replaced by gold. Hybrid materials are formed by a seeded-growth mechanism. Pre-formed nanocrystals provide the nucleation sites for the second material. (orig.)

  17. Lateral inhibition-induced pattern formation controlled by the size and geometry of the cell.

    Science.gov (United States)

    Seirin Lee, Sungrim

    2016-09-01

    Pattern formation in development biology is one of the fundamental processes by which cells change their functions. It is based on the communication of cells via intra- and intercellular dynamics of biochemicals. Thus, the cell is directly involved in biochemical interactions. However, many theoretical approaches describing biochemical pattern formation have usually neglected the cell's role or have simplified the subcellular process without considering cellular aspects despite the cell being the environment where biochemicals interact. On the other hand, recent experimental observations suggest that a change in the physical conditions of cell-to-cell contact can result in a change in cell fate and tissue patterning in a lateral inhibition system. Here we develop a mathematical model by which biochemical dynamics can be directly observed with explicitly expressed cell structure and geometry in higher dimensions, and reconsider pattern formation by lateral inhibition of the Notch-Delta signaling pathway. We explore how the physical characteristic of cell, such as cell geometry or size, influences the biochemical pattern formation in a multi-cellular system. Our results suggest that a property based on cell geometry can be a novel mechanism for symmetry breaking inducing cell asymmetry. We show that cell volume can critically influence cell fate determination and pattern formation at the tissue level, and the surface area of the cell-to-cell contact can directly affect the spatial range of patterning. PMID:27229622

  18. Pattern formation in quantum Turing machines

    CERN Document Server

    Kim, I; Kim, Ilki; Mahler, Guenter

    1999-01-01

    We investigate the iteration of a sequence of local and pair unitary transformations, which can be interpreted to result from a Turing-head (pseudo-spin $S$) rotating along a closed Turing-tape ($M$ additional pseudo-spins). The dynamical evolution of the Bloch-vector of $S$, which can be decomposed into $2^{M}$ primitive pure state Turing-head trajectories, gives rise to fascinating geometrical patterns reflecting the entanglement between head and tape. These machines thus provide intuitive examples for quantum parallelism and, at the same time, means for local testing of quantum network dynamics.

  19. Pattern formation in quantum Turing machines

    Science.gov (United States)

    Kim, Ilki; Mahler, Günter

    1999-07-01

    We investigate the iteration of a sequence of local and pair unitary transformations, which can be interpreted to result from a Turing-head (pseudospin S) rotating along a closed Turing tape (M additional pseudospins). The dynamical evolution of the Bloch vector of S, which can be decomposed into 2M primitive pure state Turing-head trajectories, gives rise to fascinating geometrical patterns reflecting the entanglement between head and tape. These machines thus provide intuitive examples for quantum parallelism and, at the same time, means for local testing of quantum network dynamics.

  20. Embryogenesis, a process of pattern formation

    Institute of Scientific and Technical Information of China (English)

    Meng-Xiang SUN

    2011-01-01

    @@ Plant embryogenesis is traditionally defined as a develop-mental process from zygote to mature embryo, which has the potential to form a complete plant (Bhojwani, 1974; Hu,2005).In dicotyledonous species, the fertilized egg or zygote usually divides according to a stereotyped pattern and gives rise to an embryo that consists of an embryonic shoot,cotyledons, hypocotyls, and an embryonic root.Thus, the basic body plan of the plant is established during the embryogenesis.Interestingly, the shoot-leaf-stem structure,not including the root, is repeatedly photocopied as a basic unit throughout plant vegetative growth (Wolpert et al.,2002).

  1. Formation of hexagonal pattern of ferrofluid in magnetic field

    International Nuclear Information System (INIS)

    Simulation of hexagonal pattern formation of ferrofluid in magnetic field has been performed using a finite element method. Based on simulation result, a new mechanism involving ‘active rings’ is proposed to explain the generation of new peaks. Hexagonal nature of the pattern is shown to be originated from the intersections of these active rings. Evidence of this active ring mechanism is demonstrated and visualized with patterns grown in strong magnetic field. Calculated single peak profile also agrees well with experimental measurements. - Highlights: • We use FEM to investigate ferrofluid pattern formation in real space and real time. • We study the behavior of ferrofluid in a large area instead of a single peak. • A consistent mechanism is proposed to explain the behavior of pattern formation

  2. Formation of hexagonal pattern of ferrofluid in magnetic field

    Energy Technology Data Exchange (ETDEWEB)

    Cao, Yuan; Ding, Z.J., E-mail: zjding@ustc.edu.cn

    2014-04-15

    Simulation of hexagonal pattern formation of ferrofluid in magnetic field has been performed using a finite element method. Based on simulation result, a new mechanism involving ‘active rings’ is proposed to explain the generation of new peaks. Hexagonal nature of the pattern is shown to be originated from the intersections of these active rings. Evidence of this active ring mechanism is demonstrated and visualized with patterns grown in strong magnetic field. Calculated single peak profile also agrees well with experimental measurements. - Highlights: • We use FEM to investigate ferrofluid pattern formation in real space and real time. • We study the behavior of ferrofluid in a large area instead of a single peak. • A consistent mechanism is proposed to explain the behavior of pattern formation.

  3. Pattern formation and coarsening in crystalline membranes

    Science.gov (United States)

    Vega, Daniel A.; Pezzutti, Aldo D.

    2011-03-01

    We study through a Brazovskii-Helfrich Hamiltonian the process of defect formation, annealing and coarsening of two dimensional crystalline membranes. In good agreement with the cosmological model of Kibble and Zurek, proposed to determine the density of topological defects at the onset of a symmetry breaking phase transition, we found that the collision of orientationally uncorrelated domains produces a structure of grains with an average density of topological defects controlled by the temperature of the quench. The strain field of the dislocations and disclinations generated during the phase separation process can induce the buckling of the membrane, slowing down the Lifshitz-Safran mechanism of coarsening observed in flat systems.

  4. Labyrinthine Instability and Pattern Formation in Ferrofluids

    CERN Document Server

    Harrison, Timothy J

    2012-01-01

    Ferrofluids suspended in liquids and constrained in quasi-two dimensional domains were exposed to transverse magnetic fields. The points of elliptical instability of nearly circular drops were measured and compared to the theoretical prediction using a fitting parameter. The data matched the predicted trend well for 3 different liquids used as suspensions; however, at extreme values of drop radius, there was a significant deviation from prediction. The angles at each node of the labyrinthine pattern, formed using high magnetic fields, were measured and compared with the prediction of 120 degrees. For the dense labyrinth the most common angles were between 135 degrees -144 degrees, suggesting interaction between arms were having a repelling effect causing angles to widen. For the less dense labyrinth the most frequent angle category decreased, supporting this hypothesis. In the experiments the area, which theoretically should be constant, was noticed to change and this encouraged an investigation into how the ...

  5. Pattern Formation and Quasicrystal Structure in Azobenzene Polymer Film

    Institute of Scientific and Technical Information of China (English)

    XU Ze-Da; CAI Zhi-Gang; ZHANG Ling-Zhi; LIU Yan-Fa; YANG Jie; SHE Wei-Long; ZHOU Jian-Ying

    2000-01-01

    Pattern formation in azobenzene polymer film by degenerate four-wave mixing is reported. Island arrays with specific patterns are analyzed with scanning electron microscopy and polarizing optical microscopy. It is demonstrated that the control of photo-induced nanostructure sized micropattern in the nonlinear organic film is possible by using properly polarized writing beams with the total incident power exceeding a certain threshold.

  6. The role of auxin signaling in early embryo pattern formation

    NARCIS (Netherlands)

    Smit, Margot E.; Weijers, Dolf

    2015-01-01

    Pattern formation of the early Arabidopsis embryo generates precursors to all major cell types, and is profoundly controlled by the signaling molecule auxin. Here we discuss recent milestones in our understanding of auxin-dependent embryo patterning. Auxin biosynthesis, transport and response mec

  7. [The physics of pattern formation at liquid interfaces

    International Nuclear Information System (INIS)

    This paper discusses pattern formation at liquid interfaces and interfaces within disordered materials. The particular topics discussed are: a racetrack for competing viscous fingers; an experimental realization of periodic boundary conditions; what sets the length scale for patterns between miscible liquids; the fractal dimension of radial Hele-Shaw patterns; detailed analyses of low-contrast Saffman-Taylor flows; and the wetting/absorption properties of polystyrene spheres in binary liquid mixtures

  8. Discrete Dynamical Models Showing Pattern Formation in Subaqueous Bedforms

    CERN Document Server

    Tufillaro, N B

    1993-01-01

    Abstract: A new class of ``toy models'' for subaqueous bedform formation are proposed and examined. These models all show a similar mechanism of wavelength selection via bedform unification, and they may have applications to bedform stratigraphy. The models are also useful for exploring general issues of pattern formation and complexity in stochastically driven far from equilibrium systems.

  9. Optical pattern formation with a 2-level nonlinearity

    CERN Document Server

    Camara, A; Labeyrie, G; Firth, W J; Oppo, G -L; Robb, G R M; Arnold, A S; Ackemann, T

    2015-01-01

    We present an experimental and theoretical investigation of spontaneous pattern formation in the transverse section of a single retro-reflected laser beam passing through a cloud of cold Rubidium atoms. In contrast to previously investigated systems, the nonlinearity at work here is that of a 2-level atom, which realizes the paradigmatic situation considered in many theoretical studies of optical pattern formation. In particular, we are able to observe the disappearance of the patterns at high intensity due to the intrinsic saturable character of 2-level atomic transitions.

  10. Neural pattern formation in networks with dendritic structure

    Science.gov (United States)

    Bressloff, P. C.; De Souza, B.

    1998-04-01

    We present a detailed analysis of a recently proposed model of neural pattern formation that is based on the combined effect of diffusion along a neuron's dendritic tree and recurrent interactions along axo-dendritic synaptic connections. For concreteness, we consider a one-dimensional array of analog neurons with the dendritic tree idealized as a one-dimensional cable. Linear stability analysis and bifurcation theory together with numerical simulations are used to establish conditions for the onset of a Turing instability leading to the formation of stable spatial patterns of network output activity. It is shown that the presence of dendritic structure can induce dynamic (time-periodic) spatial pattern formation. Moreover, correlations between the dendritic location of a synapse and the relative positions of neurons in the network are shown to result in spatially oscillating patterns of activity along the dendrites of each neuron.

  11. Pattern formation in a minimal model of continuum dislocation plasticity

    Science.gov (United States)

    Sandfeld, Stefan; Zaiser, Michael

    2015-09-01

    The spontaneous emergence of heterogeneous dislocation patterns is a conspicuous feature of plastic deformation and strain hardening of crystalline solids. Despite long-standing efforts in the materials science and physics of defect communities, there is no general consensus regarding the physical mechanism which leads to the formation of dislocation patterns. In order to establish the fundamental mechanism, we formulate an extremely simplified, minimal model to investigate the formation of patterns based on the continuum theory of fluxes of curved dislocations. We demonstrate that strain hardening as embodied in a Taylor-type dislocation density dependence of the flow stress, in conjunction with the structure of the kinematic equations that govern dislocation motion under the action of external stresses, is already sufficient for the formation of dislocation patterns that are consistent with the principle of similitude.

  12. Psychoacoustic aspects of speech pattern coding for the deaf.

    Science.gov (United States)

    Faulkner, A; Fourcin, A J; Moore, B C

    1990-01-01

    The SiVo aid, which provides a sinusoidal signal indicating voice fundamental frequency and voicing information, was compared as an aid to lipreading to a conventional hearing aid having extended low-frequency output. Speech perceptual measures of consonant confusions in lipreading and the identification of a simple intonation contrast were collected from a group of 8 profoundly deaf adults. Audiometric and psychoacoustic measures were also collected. In the intonation task, 6 of the 7 patients tested performed better with the SiVo aid and the seventh scored perfectly with both aids. Four patients (out of 8) preferred to use the SiVo aid rather than the conventional aid, and 2 of these showed a significant advantage with the SiVo aid in the aided lipreading of consonants. The remaining 4 patients preferred the conventional aid, although none of these patients showed a significant advantage with the conventional aid in the lipreading of consonants. The 4 patients who preferred the SiVo aid over the conventional aid had very profound hearing loss and minimal dynamic range at 500 Hz and above, and those receiving the greatest benefit showed no measurable frequency selectivity. In the 2 patients who preferred the SiVo aid, yet showed no significant advantage for the SiVo aid in consonant lipreading, consonant confusions were also measured for aided lipreading, using a prototype aid providing both voice fundamental frequency and voiceless excitation patterns. Both patients showed additional and significant benefit from inclusion of the voiceless pattern element. PMID:2356724

  13. Argon ion beam induced surface pattern formation on Si

    Energy Technology Data Exchange (ETDEWEB)

    Hofsäss, H.; Bobes, O.; Zhang, K. [2nd Institute of Physics, Faculty of Physics, University Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen (Germany)

    2016-01-21

    The development of self-organized surface patterns on Si due to noble gas ion irradiation has been studied extensively in the past. In particular, Ar ions are commonly used and the pattern formation was analyzed as function of ion incidence angle, ion fluence, and ion energies between 250 eV and 140 keV. Very few results exist for the energy regime between 1.5 keV and 10 keV and it appears that pattern formation is completely absent for these ion energies. In this work, we present experimental data on pattern formation for Ar ion irradiation between 1 keV and 10 keV and ion incidence angles between 50° and 75°. We confirm the absence of patterns at least for ion fluences up to 10{sup 18} ions/cm{sup 2}. Using the crater function formalism and Monte Carlo simulations, we calculate curvature coefficients of linear continuum models of pattern formation, taking into account contribution due to ion erosion and recoil redistribution. The calculations consider the recently introduced curvature dependence of the erosion crater function as well as the dynamic behavior of the thickness of the ion irradiated layer. Only when taking into account these additional contributions to the linear theory, our simulations clearly show that that pattern formation is strongly suppressed between about 1.5 keV and 10 keV, most pronounced at 3 keV. Furthermore, our simulations are now able to predict whether or not parallel oriented ripple patterns are formed, and in case of ripple formation the corresponding critical angles for the whole experimentally studied energies range between 250 eV and 140 keV.

  14. Argon ion beam induced surface pattern formation on Si

    Science.gov (United States)

    Hofsäss, H.; Bobes, O.; Zhang, K.

    2016-01-01

    The development of self-organized surface patterns on Si due to noble gas ion irradiation has been studied extensively in the past. In particular, Ar ions are commonly used and the pattern formation was analyzed as function of ion incidence angle, ion fluence, and ion energies between 250 eV and 140 keV. Very few results exist for the energy regime between 1.5 keV and 10 keV and it appears that pattern formation is completely absent for these ion energies. In this work, we present experimental data on pattern formation for Ar ion irradiation between 1 keV and 10 keV and ion incidence angles between 50° and 75°. We confirm the absence of patterns at least for ion fluences up to 1018 ions/cm2. Using the crater function formalism and Monte Carlo simulations, we calculate curvature coefficients of linear continuum models of pattern formation, taking into account contribution due to ion erosion and recoil redistribution. The calculations consider the recently introduced curvature dependence of the erosion crater function as well as the dynamic behavior of the thickness of the ion irradiated layer. Only when taking into account these additional contributions to the linear theory, our simulations clearly show that that pattern formation is strongly suppressed between about 1.5 keV and 10 keV, most pronounced at 3 keV. Furthermore, our simulations are now able to predict whether or not parallel oriented ripple patterns are formed, and in case of ripple formation the corresponding critical angles for the whole experimentally studied energies range between 250 eV and 140 keV.

  15. Argon ion beam induced surface pattern formation on Si

    International Nuclear Information System (INIS)

    The development of self-organized surface patterns on Si due to noble gas ion irradiation has been studied extensively in the past. In particular, Ar ions are commonly used and the pattern formation was analyzed as function of ion incidence angle, ion fluence, and ion energies between 250 eV and 140 keV. Very few results exist for the energy regime between 1.5 keV and 10 keV and it appears that pattern formation is completely absent for these ion energies. In this work, we present experimental data on pattern formation for Ar ion irradiation between 1 keV and 10 keV and ion incidence angles between 50° and 75°. We confirm the absence of patterns at least for ion fluences up to 1018 ions/cm2. Using the crater function formalism and Monte Carlo simulations, we calculate curvature coefficients of linear continuum models of pattern formation, taking into account contribution due to ion erosion and recoil redistribution. The calculations consider the recently introduced curvature dependence of the erosion crater function as well as the dynamic behavior of the thickness of the ion irradiated layer. Only when taking into account these additional contributions to the linear theory, our simulations clearly show that that pattern formation is strongly suppressed between about 1.5 keV and 10 keV, most pronounced at 3 keV. Furthermore, our simulations are now able to predict whether or not parallel oriented ripple patterns are formed, and in case of ripple formation the corresponding critical angles for the whole experimentally studied energies range between 250 eV and 140 keV

  16. Thermal recovery of bitumen from carbonate reservoirs: formation damage aspects

    Energy Technology Data Exchange (ETDEWEB)

    Thimm, H.F. [Thimm Petroleum Technologies Inc. (Canada)

    2011-07-01

    In Alberta, about a third of bitumen resources are located in carbonate reservoirs but none of it is considered as a reserve by the Alberta Energy Resources Conservation Board (ERCB). In fact no pilot has been successful in recovering bitumen from carbonate reservoirs due to formation damage problems. Carbonate rock is chemically active at the high temperatures reached in thermal recovery processes, carbon dioxide is generated and carbonate minerals are precipitated. The aim of this paper is to find methods to control the phenomenon. Kinetic and thermodynamic controls were used. Results showed that formation damage is due to aqueous carbon dioxide attacking the reservoir rock. They found that a reduction of the partial pressure of carbon dioxide could inhibit the initial dissolution of rock material by reducing the concentration of aqueous carbon dioxide. A method to overcome the formation damage problem was found and a co-injection of gas and steam process was developed to apply it.

  17. Phyllotactic pattern formation in early stages of cactus ontogeny

    Directory of Open Access Journals (Sweden)

    Edyta M. Gola

    2011-04-01

    Full Text Available Representatives of the family Cactaceae are characterized by a wide range of phyllotaxis. To assess the origin of this diversity, early stages of phyllotactic pattern formation were examined in seedlings. The analysis of the sequence of areole initiation revealed intertribal differences. In seedlings from the Trichocereeae (Gymnocalycium, Rebutia and Notocacteae (Parodia tribes, two opposite cotyledonal areoles developed as the first elements of a pattern. Usually, next pair of areoles was initiated perpendicularly to cotyledonal areoles, starting the decussate pattern. This pattern was subsequently transformed into bijugate or into simple spiral phyllotaxis. In seedlings from the Cacteae tribe (Mammillaria and Thelocactus, cotyledonal areoles were never observed and the first areoles always appeared in the space between cotyledons. It was either areole pair (mainly in Mammillaria, starting a decussate pattern, or a single areole (mainly in Thelocactus quickly followed by areoles spirally arranged, usually in accordance with the main Fibonacci phyllotaxis. Differences in the initial stages of pattern formation do not fully explain the phyllotaxis diversity in mature cacti. Only two, the most common phyllotactic patterns occurred in the early development of studied seedlings, i.e. the main Fibonacci and the decussate pattern. Discrepancy in the range of phyllotactic spectra in seedlings and in mature plants suggests that phyllotaxis diversity emerges during further plant growth. Initial phyllotactic transformations, occurring already in the very early stages, indicate great plasticity of cactus growth and seem to support the hypothesis of the ontogenetic increase of phyllotaxis diversity due to transformations.

  18. Write Pattern Format Algorithm for Reliable NAND-Based SSDs

    OpenAIRE

    Xu, Q.; Chen, T.; Hu, Y.; P. Gong

    2014-01-01

    This brief presents and evaluates a pre-coding algorithm to reduce power consumption and improve data retention in NAND-based solid-state drives. Compared to the state-of-the-art asymmetric coding and stripe pattern elimination algorithm, the proposed write pattern format algorithm (WPFA) achieves better data retention while consuming less power. The hardware for WPFA is simpler and requires less circuitry. The performance of WPFA is evaluated by both computer simulations and field-programmab...

  19. Spongiosa Primary Development: A Biochemical Hypothesis by Turing Patterns Formations

    Directory of Open Access Journals (Sweden)

    Oscar Rodrigo López-Vaca

    2012-01-01

    Full Text Available We propose a biochemical model describing the formation of primary spongiosa architecture through a bioregulatory model by metalloproteinase 13 (MMP13 and vascular endothelial growth factor (VEGF. It is assumed that MMP13 regulates cartilage degradation and the VEGF allows vascularization and advances in the ossification front through the presence of osteoblasts. The coupling of this set of molecules is represented by reaction-diffusion equations with parameters in the Turing space, creating a stable spatiotemporal pattern that leads to the formation of the trabeculae present in the spongy tissue. Experimental evidence has shown that the MMP13 regulates VEGF formation, and it is assumed that VEGF negatively regulates MMP13 formation. Thus, the patterns obtained by ossification may represent the primary spongiosa formation during endochondral ossification. Moreover, for the numerical solution, we used the finite element method with the Newton-Raphson method to approximate partial differential nonlinear equations. Ossification patterns obtained may represent the primary spongiosa formation during endochondral ossification.

  20. Temperature Controlled Lateral Pattern Formation in Confined Polymer Thin Films

    Institute of Scientific and Technical Information of China (English)

    ZHANG Hao-li; David G. Bucknall

    2004-01-01

    The thermal induced topography change in a model system consisting of a polymer film on a Si substrate capped by a thin metal layer has been studied by using AFM. Regular lateral patterns over large areas were observed on the surface when the system was heated to a sufficiently high temperature. 2D-FFT analysis to the AFM images indicates that the patterns are isotropic and have well defined periodicities. The periodicities of the characteristic patterns are found to depend strongly on the annealing temperature. The study of the kinetics of the formation reveals that such a topography forms almost instantaneously once the critical temperature is reached. It is suggested that this wave-like surface morphology is driven by the thermal expansion coefficient mismatch of the different layers. This method for generating regular wave-like patterns could be used as a general method for patterning various organic materials into micro/nanostructures.

  1. Mining Regular Patterns in Data Streams Using Vertical Format

    Directory of Open Access Journals (Sweden)

    G. Vijay Kumar

    2012-04-01

    Full Text Available The increasing prominence of data streams has been lead to the study of online mining in order to capture interesting trends, patterns and exceptions. Recently, temporal regularity in occurrence behavior of a pattern was treated as an emerging area in several online applications like network traffic, sensor networks, e-business and stock market analysis etc. A pattern is said to be regular in a data stream, if its occurrence behavior is not more than the user given regularity threshold. Although there has been some efforts done in finding regular patterns over stream data, no such method has been developed yet by using vertical data format. Therefore, in this paper we develop a new method called VDSRP-method to generate the complete set of regular patterns over a data stream at a user given regularity threshold. Our experimental results show that highly efficiency in terms of execution and memory consumption.

  2. Incremental Mining for Regular Frequent Patterns in Vertical Format

    Directory of Open Access Journals (Sweden)

    Vijay Kumar G

    2013-04-01

    Full Text Available In the real world database updates continuously in several online applications like super market, network monitoring, web administration, stock market etc. Frequent pattern mining is afundamental and essential area in data mining research. Not only occurrence frequency of a pattern but also occurrence behaviour of a pattern may be treated as important criteria to measure the interestingness of a pattern. A frequent pattern is said to be regular frequent if the occurrence behaviour is less than or equal to the user given regularity threshold. In incremental transactional databases the occurrence frequency and the occurrence behaviour of a pattern changes whenever a small set of new transactions are added to the database. It is undesirable to mine regular frequent patterns from the scratch. Thus proposes a new algorithm called RFPID (Regular Frequent Pattern Mining in Incremental Databases to mine regular frequent patterns in incremental transactional databases using vertical data format which requires only one database scan. The experimental results show our algorithm is efficient in both memory utilization and execution.

  3. Modelling Global Pattern Formations for Collaborative Learning Environments

    DEFF Research Database (Denmark)

    Grappiolo, Corrado; Cheong, Yun-Gyung; Khaled, Rilla;

    2012-01-01

    We present our research towards the design of a computational framework capable of modelling the formation and evolution of global patterns (i.e. group structures) in a population of social individuals. The framework is intended to be used in collaborative environments, e.g. social serious games...

  4. Nonequilibrium pattern formation and spatiotemporal chaos in fluid convection

    Energy Technology Data Exchange (ETDEWEB)

    Michael Cross

    2006-09-13

    The final report for grant number DE-FG03-98ER14891 summarizes the application of the unique simulation capabilities developed under DOE support to investigations of important issues in pattern formation and spatiotemporal chaos in Rayleigh-Benard convection, particularly emphasizing quantitative contact with the active experimental programs.

  5. Modification of pattern formation in doubly resonant second

    DEFF Research Database (Denmark)

    Lodahl, Peter; Bache, Morten; Saffmann, M.

    2000-01-01

    We analyze pattern formation in doubly resonant intracavity second-harmonic generation in the presence of competing nondegenerate parametric downconversion. We show that for positive cavity detuning of the fundamental frequency the threshold for parametric oscillation is lower than that of...

  6. How does tidal flow affect pattern formation in mussel beds?

    Science.gov (United States)

    Sherratt, Jonathan A; Mackenzie, Julia J

    2016-10-01

    In the Wadden Sea, mussel beds self-organise into spatial patterns consisting of bands parallel to the shore. A leading explanation for this phenomenon is that mussel aggregation reduces losses from dislodgement and predation, because of the adherence of mussels to one another. Previous mathematical modelling has shown that this can lead to spatial patterning when it is coupled to the advection from the open sea of algae-the main food source for mussels in the Wadden Sea. A complicating factor in this process is that the advection of algae will actually oscillate with the tidal flow. This has been excluded from previous modelling studies, and the present paper concerns the implications of this oscillation for pattern formation. The authors initially consider piecewise constant ("square-tooth") oscillations in advection, which enables analytical investigation of the conditions for pattern formation. They then build on this to study the more realistic case of sinusoidal oscillations. Their analysis shows that future research on the details of pattern formation in mussel beds will require an in-depth understanding of how the tides affect long-range inhibition among mussels. PMID:27343625

  7. Integration of IT-Security Aspects into Information Demand Analysis and Patterns

    OpenAIRE

    Sandkuhl, Kurt; Matulevicius, Raimundas; Kirikova, Marite; Ahmed, Naved

    2015-01-01

    Information logistics in general addresses demand-oriented information supply in organizations. IT-security has not received much attention in information logistics research. However, integration of security aspects into information logistics methods could be useful for application contexts with strong security requirements. As a contribution to this aspect, the paper investigates the possibility to extend information demand patterns (IDP) and information demand analysis (IDA) with security e...

  8. Formation of co-crystals: Kinetic and thermodynamic aspects

    Science.gov (United States)

    Gagnière, E.; Mangin, D.; Puel, F.; Rivoire, A.; Monnier, O.; Garcia, E.; Klein, J. P.

    2009-04-01

    Co-crystallisation is a recent method of great interest for the pharmaceutical industry, since pharmaceutical co-crystals represent useful materials for drug products. In this study, an active pharmaceutical ingredient (carbamazepine (CBZ)) co-crystallized with a vitamin (nicotinamide (NCT)) was chosen as a model substance. This work was focused on the construction of a phase diagram for the system CBZ/NCT, split in six domains for kinetic reasons (the different solid phases which might appear during the crystallisation) and in four domains according to thermodynamic aspects (the stable final phase obtained). Although co-crystals are not ionic compounds, the supersaturation of co-crystals can be evaluated by considering the solubility product. Batch crystallisation operations were carried out in a stirred vessel equipped with an in situ video probe. This latter device was a powerful analysis tool to monitor the CBZ/NCT co-crystals and single CBZ crystals since these two crystalline phases grown in ethanol exhibited needle and platelet habits. As concerns kinetics, the different solid phases which might appear during the experiments were observed and competed against each others. In accordance with thermodynamics, the stable solid form was obtained at the end of the operation. Finally some preliminary results indicate that the nucleation of co-crystals may be favoured by the presence of CBZ crystals. Epitaxial relationships between CBZ/NCT co-crystals and CBZ crystals were suspected.

  9. On the physical basis of pattern formation in nonlinear systems

    International Nuclear Information System (INIS)

    Spatial, respectively spatiotemporal patterns appear in a gaseous conductor (plasma) when an external constraint produces a local gradient of electron kinetic energy. Under such conditions, collective quantum effects related to the spatial separation of the excitation and ionization cross-sections determine the appearance of adjacent opposite space charges. The state of the resulting space charge configuration depends on the self-enhancement process of positive ions production, which destabilizes the system. Thus, a spatial pattern in the form of a stable double layer appears after self-organization when the above gradient is smaller than that for which the double layer transits into a moving phase (spatiotemporal pattern). The proposed explanation, based on investigations performed on self-organization phenomena observed in gaseous conductors, suggests a new possibility to clarify the challenging problems concerning the actual physical basis of pattern formation in semiconductors

  10. Mining Regular Patterns in Data Streams Using Vertical Format

    Directory of Open Access Journals (Sweden)

    G. Vijay Kumar

    2012-04-01

    Full Text Available The increasing prominence of data streams has been lead to the study of online mining in orderto capture interesting trends, patterns and exceptions. Recently, temporal regularity in occurrencebehavior of a pattern was treated as an emerging area in several online applications like networktraffic, sensor networks, e-business and stock market analysis etc. A pattern is said to be regularin a data stream, if its occurrence behavior is not more than the user given regularity threshold.Although there has been some efforts done in finding regular patterns over stream data, no suchmethod has been developed yet by using vertical data format. Therefore, in this paper wedevelop a new method called VDSRP-method to generate the complete set of regular patternsover a data stream at a user given regularity threshold. Our experimental results show that highlyefficiency in terms of execution and memory consumption.

  11. A new mechanism for dendritic pattern formation in dense systems

    Science.gov (United States)

    Oikawa, Noriko; Kurita, Rei

    2016-06-01

    Patterns are often formed when particles cluster: Since patterns reflect the connectivity of different types of material, the emergence of patterns affects the physical and chemical properties of systems and shares a close relationship to their macroscopic functions. A radial dendritic pattern (RDP) is observed in many systems such as snow crystals, polymer crystals and biological systems. Although most of these systems are considered as dense particle suspensions, the mechanism of RDP formation in dense particle systems is not yet understood. It should be noted that the diffusion limited aggregation model is not applicable to RDP formation in dense systems, but in dilute particle systems. Here, we propose a simple model that exhibits RDP formation in a dense particle system. The model potential for the inter-particle interaction is composed of two parts, a repulsive and an attractive force. The repulsive force is applied to all the particles all the time and the attractive force is exerted only among particles inside a circular domain, which expands at a certain speed as a wave front propagating from a preselected centre. It is found that an RDP is formed if the velocity of the wave front that triggers the attractive interaction is of the same order of magnitude as the time scale defined by the aggregation speed.

  12. Liesegang patterns: Complex formation of precipitate in an electric field

    Indian Academy of Sciences (India)

    István Lagzi

    2005-02-01

    Formation of 1D Liesegang patterns was studied numerically in precipitation and reversible complex formation of precipitate scenarios in an electric field. The Ostwald’s supersaturation model reported by Büki, Kárpáti-Smidróczki and Zrínyi (BKZ model) was extended further. In the presence of an electric field the position of the first and the last bands () measured from the junction point of the outer and the inner electrolytes can be described by the function = 1 $_{}^{1/2}$ + 2 + 3 , where is the time elapsed until the nth band formation, 1, 2 and 3 are constants. The variation of the total number of bands with different electric field strengths () has a maximum. For higher one can observe a moving precipitation zone that becomes wider due to precipitation and reversible complex formation.

  13. Wavenumber Locking And Pattern Formation In Spatially Forced Systems

    Energy Technology Data Exchange (ETDEWEB)

    Hagberg, Aric [Los Alamos National Laboratory; Meron, Ehud [BEN-GURION UNIV; Manor, Rotem [BEN-GURION UNIV

    2008-01-01

    We study wavenumber locking and pattern formation resulting from weak spatially periodic one-dimensional forcing of two-dimensional systems. We consider systems that support stationary or traveling stripe patterns in the absence of the forcing, and assume that the one-dimensional forcing is aligned with the direction of the stripe patterns. When the forcing wavenumber is about twice as large as the wavenumber of the unforced system we find that the forcing can either select or stabilize a resonant stripe solution at half the forcing wavenumber, or create a new resonant solution. When the wavenumber mismatch is high we find that the wave-vector component of the pattern in the direction of the forcing can stilI lock at half the forcing wavenumber, but a wave-vector component in the orthogonal direction develops to compensate for the total wavenumber. As a result stationary two-dimensional rectangular and oblique patterns form. When the unforced system supports traveling waves resonant rectangular patterns remain stationary but the oblique patterns travel in a direction orthogonal to the traveling-waves.

  14. Controlling Pattern Formation in Nanoparticle Assemblies via Directed Solvent Dewetting

    Science.gov (United States)

    Martin, Christopher P.; Blunt, Matthew O.; Pauliac-Vaujour, Emmanuelle; Stannard, Andrew; Moriarty, Philip; Vancea, Ioan; Thiele, Uwe

    2007-09-01

    We have achieved highly localized control of pattern formation in two-dimensional nanoparticle assemblies by direct modification of solvent dewetting dynamics. A striking dependence of nanoparticle organization on the size of atomic force microscope-generated surface heterogeneities is observed and reproduced in numerical simulations. Nanoscale features induce a rupture of the solvent-nanoparticle film, causing the local flow of solvent to carry nanoparticles into confinement. Microscale heterogeneities instead slow the evaporation of the solvent, producing a remarkably abrupt interface between different nanoparticle patterns.

  15. Dynamic Phases, Pinning, and Pattern Formation for Driven Dislocation Assemblies

    Science.gov (United States)

    Zhou, Caizhi; Reichhardt, Charles; Olson Reichhardt, Cynthia J.; Beyerlein, Irene J.

    2015-01-01

    We examine driven dislocation assemblies and show that they can exhibit a set of dynamical phases remarkably similar to those of driven systems with quenched disorder such as vortices in superconductors, magnetic domain walls, and charge density wave materials. These phases include pinned-jammed, fluctuating, and dynamically ordered states, and each produces distinct dislocation patterns as well as specific features in the noise fluctuations and transport properties. Our work suggests that many of the results established for systems with quenched disorder undergoing plastic depinning transitions can be applied to dislocation systems, providing a new approach for understanding pattern formation and dynamics in these systems.

  16. Molecular aspect of good eating quality formation in Japonica rice.

    Directory of Open Access Journals (Sweden)

    Ming-Mao Sun

    quality, but GBSS1 decreased eating quality. The results indicated the possibility of developing high palatability cultivars through modification of key genes related to japonica rice eating quality formation in starch biosynthesis.

  17. Patterns of Association among Multiple Motivations and Aspects of Achievement in Reading

    Science.gov (United States)

    Ho, Amy N.; Guthrie, John T.

    2013-01-01

    The present study investigated the multivariate relationships between several aspects of motivation and achievement in reading. Canonical correlation analysis was used to examine patterns of associations for reading information texts in Phase I and for reading literary texts in Phase II. The samples were 923 and 225 seventh graders, respectively.…

  18. On a New Mechanism of Pattern Formation in Population Dynamics

    OpenAIRE

    Génieys, Stéphane; Volpert, Vitaly; Auger, Pierre

    2005-01-01

    We study a reaction-diffusion equation with an integral term describing nonlocal consumption of resources. We show that a homogeneous equilibrium can lose its stability resulting in appearance of stationary spatial structures. It is a new mechanism of pattern formation in population dynamics that can explain emergence of biological species due to intra-specific competition and random mutations.Travelling waves connecting an unstable homogeneous equilibrium and a periodic in space stationary s...

  19. On pattern formation in the Gray-Scott model

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    In the paper, we investigate an elliptic system well-known as the Gray-Scott model and present some further results for positive solutions of this model. More precisely, we give the refined a priori estimates of positive solutions, and improve some previous results for the non-existence and existence of positive non-constant solutions as the parameters are varied, which imply some certain conditions where the pattern formation occurs or not.

  20. Inherent-opening-controlled pattern formation in carbon nanotube arrays

    OpenAIRE

    Huang, Xiao; Zhou, Jijie J.; Sansom, Elijah; Gharib, Morteza; Haur, Sow Chorng

    2007-01-01

    We have introduced inherent openings into densely packed carbon nanotube arrays to study self-organized pattern formation when the arrays undergo a wetting–dewetting treatment from nanotube tips. These inherent openings, made of circular or elongated hollows in nanotube mats, serve as dewetting centres, from where liquid recedes from. As the dewetting centres initiate dry zones and the dry zones expand, surrounding nanotubes are pulled away from the dewetting centres by liquid surface tension...

  1. Modeling cell-death patterning during biofilm formation

    International Nuclear Information System (INIS)

    Self-organization by bacterial cells often leads to the formation of a highly complex spatially-structured biofilm. In such a bacterial biofilm, cells adhere to each other and are embedded in a self-produced extracellular matrix (ECM). Bacillus substilis bacteria utilize localized cell-death patterns which focuses mechanical forces to form wrinkled sheet-like structures in three dimensions. A most intriguing feature underlying this biofilm formation is that vertical buckling and ridge location is biased to occur in region of high cell-death. Here we present a spatially extended model to investigate the role of the bacterial secreted ECM during the biofilm formation and the self-organization of cell-death. Using this reaction-diffusion model we show that the interaction between the cell's motion and the ECM concentration gives rise to a self-trapping instability, leading to variety of cell-death patterns. The resultant spot patterns generated by our model are shown to be in semi-quantitative agreement with recent experimental observation. (paper)

  2. Dynamics and pattern formation in a cancer network with diffusion

    Science.gov (United States)

    Zheng, Qianqian; Shen, Jianwei

    2015-10-01

    Diffusion is ubiquitous inside cells, and it is capable of inducing spontaneous pattern formation in reaction-diffusion systems on a spatially homogeneous domain. In this paper, we investigate the dynamics of a diffusive cancer network regulated by microRNA and obtain the condition that the network undergoes a Hopf bifurcation and a Turing pattern bifurcation. In addition, we also develop the amplitude equation of the network model by using Taylor series expansion, multi-scaling and further expansion in powers of a small parameter. As a result of these analyses, we obtain the explicit condition on how the dynamics of the diffusive cancer network evolve. These results reveal that this system has rich dynamics, such as spotted stripe and hexagon patterns. The bifurcation diagram helps us understand the biological mechanism in the cancer network. Finally, numerical simulations confirm our analytical results.

  3. Spontaneous Pattern Formation in an Antiferromagnetic Quantum Gas

    International Nuclear Information System (INIS)

    In this Letter we report on the spontaneous formation of surprisingly regular periodic magnetic patterns in an antiferromagnetic Bose-Einstein condensate (BEC). The structures evolve within a quasi-one-dimensional BEC of 87Rb atoms on length scales of a millimeter with typical periodicities of 20...30 μm, given by the spin healing length. We observe two sets of characteristic patterns which can be controlled by an external magnetic field. We identify these patterns as linearly unstable modes within a mean-field approach and calculate their mode structure as well as time and energy scales, which we find to be in good agreement with observations. These investigations open new prospects for controlled studies of symmetry breaking and complex quantum magnetism in bulk BEC.

  4. What drives the formation of global oil trade patterns?

    International Nuclear Information System (INIS)

    In this paper, the spatial characteristics of current global oil trade patterns are investigated by proposing a new indicator Moran-F. Meanwhile, the factors that influence the formation of oil trade patterns are identified by constructing four different kinds of spatial econometric models. The findings indicate that most oil exporters have an obvious export focus in North America and a relatively balanced export in Europe and the Asia-Pacific region. Besides supply and demand factors, technological progress and energy efficiency have also significantly influenced the oil trade. Moreover, there is a spillover effect of trade flow among different regions, but its impact is weak. In addition, oil importers in the same region have the potential to cooperate due to their similar import sources. Finally, promotion of oil importers' R&D investments can effectively reduce the demand for global oil trade. - Highlights: • A new spatial association Moran-F indicator that applies to trade flows is proposed. • Driving factors affecting the formation of oil trade patterns are identified. • Oil-exporting countries implement various export strategies in different regions. • Supply, demand and technological factors contribute to the oil trade patterns. • Spillover effect of each factor affecting oil trade flows does exist but is limited

  5. A Model of Filamentous Cyanobacteria Leading to Reticulate Pattern Formation

    Directory of Open Access Journals (Sweden)

    Carlos Tamulonis

    2014-09-01

    Full Text Available The filamentous cyanobacterium, Pseudanabaena, has been shown to produce reticulate patterns that are thought to be the result of its gliding motility. Similar fossilized structures found in the geological record constitute some of the earliest signs of life on Earth. It is difficult to tie these fossils, which are billions of years old, directly to the specific microorganisms that built them. Identifying the physicochemical conditions and microorganism properties that lead microbial mats to form macroscopic structures can lead to a better understanding of the conditions on Earth at the dawn of life. In this article, a cell-based model is used to simulate the formation of reticulate patterns in cultures of Pseudanabaena. A minimal system of long and flexible trichomes capable of gliding motility is shown to be sufficient to produce stable patterns consisting of a network of streams. Varying model parameters indicate that systems with little to no cohesion, high trichome density and persistent movement are conducive to reticulate pattern formation, in conformance with experimental observations.

  6. Arch-pattern based design and aspect-oriented implementation of Readers-Writers concurrent problem

    Directory of Open Access Journals (Sweden)

    Dumitru Ciorbă

    2007-11-01

    Full Text Available The classical problems of concurrent programming start from the design problems of operating systems in the 80-s. But today there are still proposed new solutions for these problems with the help of various design and programming approaches. The present article describes a solution which was designed according to some new object-oriented principles, based on design patterns and proposes two program solutions: firstly - an object-oriented implementation in Java language, the secondly – an aspect-oriented one in AspectJ language.

  7. Flow-driven instabilities during pattern formation of Dictyostelium discoideum

    Science.gov (United States)

    Gholami, A.; Steinbock, O.; Zykov, V.; Bodenschatz, E.

    2015-06-01

    The slime mold Dictyostelium discoideum is a well known model system for the study of biological pattern formation. In the natural environment, aggregating populations of starving Dictyostelium discoideum cells may experience fluid flows that can profoundly change the underlying wave generation process. Here we study the effect of advection on the pattern formation in a colony of homogeneously distributed Dictyostelium discoideum cells described by the standard Martiel-Goldbeter model. The external flow advects the signaling molecule cyclic adenosine monophosphate (cAMP) downstream, while the chemotactic cells attached to the solid substrate are not transported with the flow. The evolution of small perturbations in cAMP concentrations is studied analytically in the linear regime and by corresponding numerical simulations. We show that flow can significantly influence the dynamics of the system and lead to a flow-driven instability that initiate downstream traveling cAMP waves. We also show that boundary conditions have a significant effect on the observed patterns and can lead to a new kind of instability.

  8. The theory of pattern formation on directed networks.

    Science.gov (United States)

    Asllani, Malbor; Challenger, Joseph D; Pavone, Francesco Saverio; Sacconi, Leonardo; Fanelli, Duccio

    2014-01-01

    Dynamical processes on networks have generated widespread interest in recent years. The theory of pattern formation in reaction-diffusion systems defined on symmetric networks has often been investigated, due to its applications in a wide range of disciplines. Here we extend the theory to the case of directed networks, which are found in a number of different fields, such as neuroscience, computer networks and traffic systems. Owing to the structure of the network Laplacian, the dispersion relation has both real and imaginary parts, at variance with the case for a symmetric, undirected network. The homogeneous fixed point can become unstable due to the topology of the network, resulting in a new class of instabilities, which cannot be induced on undirected graphs. Results from a linear stability analysis allow the instability region to be analytically traced. Numerical simulations show travelling waves, or quasi-stationary patterns, depending on the characteristics of the underlying graph. PMID:25077521

  9. Building better oscillators using nonlinear dynamics and pattern formation

    Indian Academy of Sciences (India)

    M C Cross; Eyal Kenig; John-Mark A Allen

    2015-03-01

    Frequency and time references play an essential role in modern technology and in living systems. The precision of self-sustained oscillations is limited by the effects of noise, which becomes evermore important as the sizes of the devices become smaller. In this paper, we review our recent theoretical results on using nonlinear dynamics and pattern formation to reduce the effects of noise and improve the frequency precision of oscillators, with particular reference to ongoing experiments on oscillators based on nanomechanical resonators. We discuss using resonator nonlinearity, novel oscillator architectures and the synchronization of arrays of oscillators, to improve the frequency precision.

  10. The physics of pattern formation at liquid interfaces

    International Nuclear Information System (INIS)

    During the past year we have submitted six papers for publication, three related to the dynamics of macroscopic interfaces, and ultimately all related to solidification, and three related to the internal structure of disorderly materials, with possible applications to the processing of composite materials. In addition to completing all these projects during the past year, we have begun two new projects, one on pattern formation and one on aggregation within a composite system. A brief description is given of this research in this paper

  11. Pattern formation of frictional fingers in a gravitational potential

    CERN Document Server

    Eriksen, Jon Alm; Måløy, Knut Jørgen; Flekkøy, Eirik; Sandnes, Bjørnar

    2016-01-01

    Aligned finger structures, with a characteristic width, emerges during the slow drainage of a liquid/granular mixture in a tilted Hele-Shaw cell. A transition from vertical to horizontal alignment of the finger structures is observed as the tilting angle and the granular density are varied. An analytical model is presented, demonstrating that the alignment properties is the result of the competition between fluctuating granular stresses and the hydrostatic pressure. The dynamics is reproduced in simulations. We also show how the system explains patterns made during dyke formations.

  12. Pattern Recognition of Universal Mathematical Constants in Acheulean Biface Formats

    Directory of Open Access Journals (Sweden)

    Alan Edward Cannell

    2015-03-01

    Full Text Available The similar design formats of many Acheulean bifaces has prompted several studies into the use of ‘mental templates’, leading to controversial claims that there may be a relation between length and width equal to the Golden Ratio. To avoid subjectivity, these studies have used aggregate data from assemblages that, by definition, mask the individuality of each tool, its material, any retouching and the original imposed design. Visual pattern recognition is widely used in psychological research and some branches of engineering and a similar technique is presented to highlight the formats of two samples of the Boxgrove assemblage (one random and examine the presence of universal mathematical constants. A probabilistic analysis suggests that the repeated use of the numbers 2, Pi and Phi and the relationship between them could not have been produced by chance. These relationships appear to be constant over very long time periods and are still used today in modern gemstone design.  

  13. Formation of high aspect ratio polyamide-6 nanofibers via electrically induced double layer during electrospinning

    International Nuclear Information System (INIS)

    In the present study, the formation of high aspect ratio nanofibers in polyamide-6 was investigated as a function of applied voltage ranging from 15 to 25 kV using electrospinning technique. All other experimental parameters were kept constant. The electrospun polyamide-6 nanofibers were characterized by field-emission scanning electron microscopy (FE-SEM), transmission electron microscopy (TEM) and matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF). FE-SEM images of polyamide-6 nanofibers showed that the diameter of the electrospun fiber was decreased with increasing applied voltage. At the critical applied voltage, the polymer solution was completely ionized to form the dense high aspect ratio nanofibers in between the main nanofibers. The diameter of the polyamide-6 nanofibers was observed to be in the range of 75-110 nm, whereas the high aspect ratio structures consisted of regularly distributed very fine nanofibers with diameters of about 9-28 nm. Trends in fiber diameter and diameter distribution were discussed for the high aspect ratio nanofibers. TEM results revealed that the formation of double layers in polyamide-6 nanofibers and then split-up into ultrafine fibers. The electrically induced double layer in combination with the polyelectrolytic nature of solution is proposed as the suitable mechanisms for the formation of high aspect ratio nanofibers in polyamide-6.

  14. FORMATION MECHANISM AND SPATIAL PATTERN OF URBAN AGGLOMERATION IN CENTRAL JILIN OF CHINA

    Institute of Scientific and Technical Information of China (English)

    QIN Gan; ZHANG Ping-yu; JIAO Bin

    2006-01-01

    Urban agglomeration is made up of cities with different sizes to be linked by traffic network in a given area, and it is an inevitable result when urbanization reaches a certain level. Taking urban agglomerationin central Jilin(UACJ) as an example, this article analyzes the formation mechanism and spatial pattern of urban agglomeration in the less-developed area. First, the dynamics of UACJ has been analyzed from the aspects of geographical condition, economic foundation, policy background, and traffic condition. Then the development process is divided into three stages-single city, city group and city cluster. Secondly, the central cities are identified from the aspects of city centrality, and the development axes are classified based on economic communication capacity. Finally, the urban agglomeration is divided into five urban economic regions in order to establish the reasonable distribution of industries.

  15. Vortex formation and drag on low aspect ratio, normal flat plates

    Science.gov (United States)

    Ringuette, Matthew James

    Experiments were done to investigate the role of vortex formation in the drag force generation of low aspect ratio, normal flat plates starting from rest. This very simplified case is a first, fundamental step toward understanding the more complicated flow of hovering flight, which relies primarily on drag for propulsion. The relative importance of the plate's free end, or tip, with varying aspect ratio was also studied. Identifying the relationship among aspect ratio, vortex formation, and drag force can provide insight into the wing aspect ratios and kinematics found nature, with the eventual goal of designing man-made flapping wing micro air vehicles. The experiments were carried out using flat plate models in a towing tank at a moderate Reynolds number of 3000. Two aspect ratios, 6 and 2, were considered, the latter in order to have a highly tip-dominated case. A force balance measured the time-varying drag, and multiple, perpendicular sections of the flow velocity were measured quantitatively using digital particle image velocimetry. Vorticity fields were calculated from the velocity data, and features in the drag force for different aspect ratios were related to the vortex dynamics. Finally, since the flow is highly three-dimensional, dye flow visualization was done to characterize its structure and to augment the two-dimensional digital particle image velocimetry data.

  16. Structural and quantitative aspects of radical formation after heavy ion bombardment

    Energy Technology Data Exchange (ETDEWEB)

    Dusemund, B.; Hoffmann, A.K.; Weiland, B.; Huettermann, J. [Klinikum Homburg (Germany). Fachrichtung Biophysik

    1997-09-01

    In this report the authors present a summary of their recent attempts aiming at clarifying some basic structural and quantitative aspects of free radical formation in DNA constituents and in DNA as well as of product analysis from nucleotide model compounds. (orig./MG)

  17. Pattern formation mechanisms in motility mutants of Myxococcus xanthus

    CERN Document Server

    Starruss, Joern; Jakovljevic, Vladimir; Sogaard-Andersen, Lotte; Deutsch, Andreas; Baer, Markus

    2016-01-01

    Formation of spatial patterns of cells is a recurring theme in biology and often depends on regulated cell motility. Motility of M. xanthus depends on two motility machineries: the S-engine and A-engine. Moving M. xanthus cells can organize into spreading colonies or spore-filled fruiting bodies depending on their nutritional status. To understand these two pattern formation processes and the contributions by the two motility machineries, as well as cell reversal, we analyze spatial self-organization in 3 strains: i) a mutant that moves unidirectionally without reversing by the A-motility system only, ii) a unidirectional mutant that is also equipped with the S-motility system, and iii) the wild-type that, in addition to the two motility systems, reverses its direction of movement. The mutant moving by the A-engine illustrates that collective motion in the form of large moving clusters can arise in gliding bacteria due to steric interactions of the rod-shaped cells, without the need of invoking any biochemica...

  18. Chemical Pattern Formation in Far-From Systems.

    Science.gov (United States)

    Pearson, John Evan

    The diffusive instability was proposed as a mechanism for pattern formation in chemical systems, in the context of biological morphogenesis, by Alan Turing in 1952. The instability gives rise to a chemical pattern with an intrinsic "chemical wavelength" that is independent of the system size. Since 1952, the diffusive instability, or Turing bifurcation, has been invoked to explain pattern formation in a variety of fields. To date there has been no unambiguous observation of such an instability. Model studies of the instability are usually carried out on systems containing two variables. Such works do not address issues that are of fundamental importance in experimental studies. How does one go about finding Turing bifurcations in systems with many parameters and for which the chemical kinetics are only partially known? What is the chemical wavelength? Turing bifurcations cannot occur in systems with all diffusion coefficients exactly equal. How unequal must the diffusion coefficients be for a system to undergo a Turing bifurcation?. Reacting and diffusing systems obey a partial -differential equation which is a sum of a diffusion term and a reaction term. Dropping the diffusion term results in an ordinary differential equation describing the reaction kinetics in a well-mixed system. In this dissertation it is shown that, for systems with an arbitrary number of variables, Turing bifurcations can occur with diffusion coefficients arbitrarily close to equal, provided the corresponding well-mixed system is sufficiently close to a point of coalescence of Hopf and saddle-node bifurcations. Since the bifurcation set can be obtained directly from experiments, one does not need a detailed microscopic theory of the reaction kinetics. Similarly, the chemical wavelength can be estimated from experimental measurements without knowledge of the reaction kinetics.

  19. Localization and pattern formation in Wigner-Weyl framework

    International Nuclear Information System (INIS)

    Full text: We present the set of methods, analytical and numerical, which can illuminate the behaviour of quantum system, especially in the complex systems, e.g., where the standard 'coherent-states' approach cannot be applied. The key points demonstrating advantages of this approach are: effects of localization of possible quantum states, more proper than 'gaussian-like states'; effects of non-perturbative multiscales which cannot be calculated by means of perturbation approaches; effects of formation of complex quantum patterns from localized modes or classification and possible control of the full zoo of quantum states, including (meta) stable localized patterns (waveletons). We consider the applications of numerical-analytical technique based on local nonlinear harmonic analysis to quantum/quasiclassical description of nonlinear (polynomial/rational) dynamical problems which appear in many areas of physics. We'll consider calculations of Wigner functions W(p,q,t) as the solution of Wigner-Moyal-von Neumann equation(s) corresponding to polynomial Hamiltonians H(p,q,t). Modeling demonstrates the appearance of (meta) stable patterns generated by high-localized (coherent) structures or entangled/chaotic behaviour. We can control the type of behaviour on the level of reduced algebraical variational system. (author)

  20. Nonlinear pattern formation in bone growth and architecture

    Directory of Open Access Journals (Sweden)

    Phil eSalmon

    2015-01-01

    Full Text Available The 3D morphology of bone arises through adaptation to its required engineering performance. Genetically and adaptively bone travels along a complex spatio-temporal trajectory to acquire optimal architecture. On a cellular, micro-anatomical scale, what mechanisms coordinate the activity of osteoblasts and osteoclasts to produce complex and efficient bone architectures? One mechanism is examined here – chaotic nonlinear pattern formation (NPF – which underlies in a unifying way natural structures as disparate as trabecular bone, swarms of birds flying, island formation, fluid turbulence and others. At the heart of NPF is the fact that simple rules operating between interacting elements, and Turing-like interaction between global and local signals, lead to complex and structured patterns. The study of group intelligence exhibited by swarming birds or shoaling fish has led to an embodiment of NPF called particle swarm optimization (PSO. This theoretical model could be applicable to the behavior of osteoblasts osteoclasts and osteocytes, seeing them operating socially in response simultaneously to both global and local signals (endocrine, cytokine, mechanical resulting in their clustered activity at formation and resorption sites. This represents problem-solving by social intelligence, and could potentially add further realism to in-silico simulation of bone modeling.What insights has NPF provided to bone biology? One example concerns the genetic disorder Juvenile Pagets Disease (JPD or Idiopathic Hyperphosphatasia, where the anomalous parallel trabecular architecture characteristic of this pathology is consistent with an NPF paradigm by analogy with known experimental NPF systems. Here coupling or feedback between osteoblasts and osteoclasts is the critical element.This NPF paradigm implies a profound link between bone regulation and its architecture: in bone the architecture is the regulation. The former is the emergent consequence of the

  1. Stochastic influences on pattern formation in Rayleigh-Benard convection: Ramping experiments

    International Nuclear Information System (INIS)

    We report on computer-enhanced shadowgraph flow-visualization and heat-flux measurements of pattern formation in convective flows in a thin fluid layer of depth d that is heated from below. Most of the experiments were conducted in a cylindrical container of radius r and aspect ratio Γ==r/d=10. The temperature of the top plate of the container was held constant while the heat current through the fluid was linearly ramped in time, resulting in a temperature difference ΔT between the bottom and top plates. After initial transients ended, the reduced Rayleigh number ε==ΔT/ΔTc-1, where ΔTc is the critical temperature difference for the onset of convection, increased linearly with ramp rate β such that ε(t)=βt. When time was scaled by the vertical thermal diffusion time, our ramp rates were in the range 0.01≤β≤0.30. When the sidewalls of the cell were made of conventional plastic materials, a concentric pattern of convection rolls was always induced by dynamic sidewall forcing. When sidewalls were made of a gel that had virtually the same thermal diffusivity as the fluid, pattern formation occurred independent of cell geometry. In the earliest stages the patterns were then composed of irregularly arranged cells and varied randomly between experimental runs. The same random cellular flow was also observed in samples of square horizontal cross section. The results demonstrate the importance of stochastic effects on pattern formation in this system. However, an explanation of the measured convective heat current in terms of theoretical models requires that the noise source in these models have an intensity that is four orders of magnitude larger than that of thermal noise

  2. Topology-generating interfacial pattern formation during liquid metal dealloying

    Science.gov (United States)

    Geslin, Pierre-Antoine; McCue, Ian; Gaskey, Bernard; Erlebacher, Jonah; Karma, Alain

    2015-11-01

    Liquid metal dealloying has emerged as a novel technique to produce topologically complex nanoporous and nanocomposite structures with ultra-high interfacial area and other unique properties relevant for diverse material applications. This process is empirically known to require the selective dissolution of one element of a multicomponent solid alloy into a liquid metal to obtain desirable structures. However, how structures form is not known. Here we demonstrate, using mesoscale phase-field modelling and experiments, that nano/microstructural pattern formation during dealloying results from the interplay of (i) interfacial spinodal decomposition, forming compositional domain structures enriched in the immiscible element, and (ii) diffusion-coupled growth of the enriched solid phase and the liquid phase into the alloy. We highlight how those two basic mechanisms interact to yield a rich variety of topologically disconnected and connected structures. Moreover, we deduce scaling laws governing microstructural length scales and dealloying kinetics.

  3. Territorial pattern formation in the absence of an attractive potential.

    Science.gov (United States)

    Potts, Jonathan R; Lewis, Mark A

    2016-01-01

    Territoriality is a phenomenon exhibited throughout nature. On the individual level, it is the processes by which organisms exclude others of the same species from certain parts of space. On the population level, it is the segregation of space into separate areas, each used by subsections of the population. Proving mathematically that such individual-level processes can cause observed population-level patterns to form is necessary for linking these two levels of description in a non-speculative way. Previous mathematical analysis has relied upon assuming animals are attracted to a central area. This can either be a fixed geographical point, such as a den- or nest-site, or a region where they have previously visited. However, recent simulation-based studies suggest that this attractive potential is not necessary for territorial pattern formation. Here, we construct a partial differential equation (PDE) model of territorial interactions based on the individual-based model (IBM) from those simulation studies. The resulting PDE does not rely on attraction to spatial locations, but purely on conspecific avoidance, mediated via scent-marking. We show analytically that steady-state patterns can form, as long as (i) the scent does not decay faster than it takes the animal to traverse the terrain, and (ii) the spatial scale over which animals detect scent is incorporated into the PDE. As part of the analysis, we develop a general method for taking the PDE limit of an IBM that avoids destroying any intrinsic spatial scale in the underlying behavioral decisions. PMID:25822451

  4. Ternary eutectic dendrites: Pattern formation and scaling properties

    Energy Technology Data Exchange (ETDEWEB)

    Rátkai, László; Szállás, Attila; Pusztai, Tamás [Institute for Solid State Physics and Optics, Wigner Research Centre for Physics, P.O. Box 49, H-1525 Budapest (Hungary); Mohri, Tetsuo [Center for Computational Materials Science, Institute for Materials Research, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577 (Japan); Gránásy, László, E-mail: granasy.laszlo@wigner.mta.hu [Institute for Solid State Physics and Optics, Wigner Research Centre for Physics, P.O. Box 49, H-1525 Budapest (Hungary); Brunel University, Uxbridge, Middlesex UB8 3PH (United Kingdom)

    2015-04-21

    Extending previous work [Pusztai et al., Phys. Rev. E 87, 032401 (2013)], we have studied the formation of eutectic dendrites in a model ternary system within the framework of the phase-field theory. We have mapped out the domain in which two-phase dendritic structures grow. With increasing pulling velocity, the following sequence of growth morphologies is observed: flat front lamellae → eutectic colonies → eutectic dendrites → dendrites with target pattern → partitionless dendrites → partitionless flat front. We confirm that the two-phase and one-phase dendrites have similar forms and display a similar scaling of the dendrite tip radius with the interface free energy. It is also found that the possible eutectic patterns include the target pattern, and single- and multiarm spirals, of which the thermal fluctuations choose. The most probable number of spiral arms increases with increasing tip radius and with decreasing kinetic anisotropy. Our numerical simulations confirm that in agreement with the assumptions of a recent analysis of two-phase dendrites [Akamatsu et al., Phys. Rev. Lett. 112, 105502 (2014)], the Jackson-Hunt scaling of the eutectic wavelength with pulling velocity is obeyed in the parameter domain explored, and that the natural eutectic wavelength is proportional to the tip radius of the two-phase dendrites. Finally, we find that it is very difficult/virtually impossible to form spiraling two-phase dendrites without anisotropy, an observation that seems to contradict the expectations of Akamatsu et al. Yet, it cannot be excluded that in isotropic systems, two-phase dendrites are rare events difficult to observe in simulations.

  5. Ternary eutectic dendrites: Pattern formation and scaling properties

    International Nuclear Information System (INIS)

    Extending previous work [Pusztai et al., Phys. Rev. E 87, 032401 (2013)], we have studied the formation of eutectic dendrites in a model ternary system within the framework of the phase-field theory. We have mapped out the domain in which two-phase dendritic structures grow. With increasing pulling velocity, the following sequence of growth morphologies is observed: flat front lamellae → eutectic colonies → eutectic dendrites → dendrites with target pattern → partitionless dendrites → partitionless flat front. We confirm that the two-phase and one-phase dendrites have similar forms and display a similar scaling of the dendrite tip radius with the interface free energy. It is also found that the possible eutectic patterns include the target pattern, and single- and multiarm spirals, of which the thermal fluctuations choose. The most probable number of spiral arms increases with increasing tip radius and with decreasing kinetic anisotropy. Our numerical simulations confirm that in agreement with the assumptions of a recent analysis of two-phase dendrites [Akamatsu et al., Phys. Rev. Lett. 112, 105502 (2014)], the Jackson-Hunt scaling of the eutectic wavelength with pulling velocity is obeyed in the parameter domain explored, and that the natural eutectic wavelength is proportional to the tip radius of the two-phase dendrites. Finally, we find that it is very difficult/virtually impossible to form spiraling two-phase dendrites without anisotropy, an observation that seems to contradict the expectations of Akamatsu et al. Yet, it cannot be excluded that in isotropic systems, two-phase dendrites are rare events difficult to observe in simulations

  6. Cleavage pattern and mesentoblast formation in Acanthochiton crinitus (Polyplacophora, Mollusca).

    Science.gov (United States)

    van den Biggelaar, J A

    1996-03-15

    In characteristic spiralian embryos the mesentoblast is the stem cell of the mesodermal bands. It is a derivative of the dorsal quadrant. At least in gastropod molluscs, the ancestral form for the specification of the dorsal quadrant out of four initially equal quadrants is by centralization of one of the four macromeres after the separation of the presumptive ecto- and entoblast cells. Then this macromere is induced by the animal micromeres to produce the mesentoblast. In this paper it is shown that in the embryo of the polyplacophoran Acanthochiton crinitus, specification of the dorsal quadrant and formation of the mesentoblast exactly follow the same pattern. After deletion of the first quartet of micromeres none of the macromeres is centralized, no mesentoblast is formed, and the embryo remains radially symmetrical. Apparently, the mechanism for the specification of the dorsal quadrant and the formation of the mesentoblast has been conserved during the evolution of the main molluscan taxa. It has been discussed whether this mechanism might be a plesiomorphous property, characteristic of less derived spiralian phyla. PMID:8631512

  7. Geometrical Aspects During Formation of Compact Aggregates of Red Blood Cells

    Directory of Open Access Journals (Sweden)

    Cardoso A.V.

    2002-01-01

    Full Text Available In the past forty years considerable progress has been achieved on the knowledge of human blood as a non-Newtonian shear-thinning suspension, whose initial state, that is at rest (stasis or at very low shear rates, has a gel-like internal structure which is destroyed as shear stress increases. The main goal of this communication is to describe the role of geometrical aspects during RBC (red blood cell aggregate formation, growth and compaction on naturally aggregate (porcine blood and non-aggregate (bovine blood samples. We consider how these aspects coupled with tension equilibrium are decisive to transform red cell linear roleaux to three-dimensional aggregates or clusters. Geometrical aspects are also crucial on the compaction of red blood cell aggregates. These densely packed aggregates could precipitate out of blood- either as dangerous deposits on arterial walls, or as clots which travel in suspension until they block some crucial capillary.

  8. Spatial pattern formation facilitates eradication of infectious diseases.

    Science.gov (United States)

    Eisinger, Dirk; Thulke, Hans-Hermann

    2008-04-01

    Control of animal-born diseases is a major challenge faced by applied ecologists and public health managers. To improve cost-effectiveness, the effort required to control such pathogens needs to be predicted as accurately as possible. In this context, we reviewed the anti-rabies vaccination schemes applied around the world during the past 25 years.We contrasted predictions from classic approaches based on theoretical population ecology (which governs rabies control to date) with a newly developed individual-based model. Our spatially explicit approach allowed for the reproduction of pattern formation emerging from a pathogen's spread through its host population.We suggest that a much lower management effort could eliminate the disease than that currently in operation. This is supported by empirical evidence from historic field data. Adapting control measures to the new prediction would save one-third of resources in future control programmes.The reason for the lower prediction is the spatial structure formed by spreading infections in spatially arranged host populations. It is not the result of technical differences between models.Synthesis and applications. For diseases predominantly transmitted by neighbourhood interaction, our findings suggest that the emergence of spatial structures facilitates eradication. This may have substantial implications for the cost-effectiveness of existing disease management schemes, and suggests that when planning management strategies consideration must be given to methods that reflect the spatial nature of the pathogen-host system. PMID:18784795

  9. Pattern formation in dielectric barrier discharges with different dielectric materials

    International Nuclear Information System (INIS)

    The influence of dielectric material on the bifurcation and spatiotemporal dynamics of the patterns in dielectric barrier discharge in argon/air at atmospheric pressure is studied. It is found that pattern bifurcation sequences are different with different dielectric materials. The spatiotemporal dynamics of the hexagonal pattern in dielectric barrier discharge depends on the dielectric material. The hexagon pattern with glass dielectric is an interleaving of two rectangular sublattices appearing at different moments. The hexagon pattern with quartz dielectric is composed of one set of hexagonal lattice discharging twice in one half cycle of the applied voltage, one is at the rising edge and the other at the falling edge. It results in that the accumulation of wall charges in individual microdischarges in a hexagon pattern with quartz dielectric is greater than that with glass dielectric, which is in agreement with the electron density measurement by Stark broadening of Ar I 696.54 nm.

  10. Modeling of metal nanocluster growth on patterned substrates and surface pattern formation under ion bombardment

    Energy Technology Data Exchange (ETDEWEB)

    Numazawa, Satoshi

    2012-11-01

    This work addresses the metal nanocluster growth process on prepatterned substrates, the development of atomistic simulation method with respect to an acceleration of the atomistic transition states, and the continuum model of the ion-beam inducing semiconductor surface pattern formation mechanism. Experimentally, highly ordered Ag nanocluster structures have been grown on pre-patterned amorphous SiO{sub 2} surfaces by oblique angle physical vapor deposition at room temperature. Despite the small undulation of the rippled surface, the stripe-like Ag nanoclusters are very pronounced, reproducible and well-separated. The first topic is the investigation of this growth process with a continuum theoretical approach to the surface gas condensation as well as an atomistic cluster growth model. The atomistic simulation model is a lattice-based kinetic Monte-Carlo (KMC) method using a combination of a simplified inter-atomic potential and experimental transition barriers taken from the literature. An effective transition event classification method is introduced which allows a boost factor of several thousand compared to a traditional KMC approach, thus allowing experimental time scales to be modeled. The simulation predicts a low sticking probability for the arriving atoms, millisecond order lifetimes for single Ag monomers and {approx}1 nm square surface migration ranges of Ag monomers. The simulations give excellent reproduction of the experimentally observed nanocluster growth patterns. The second topic specifies the acceleration scheme utilized in the metallic cluster growth model. Concerning the atomistic movements, a classical harmonic transition state theory is considered and applied in discrete lattice cells with hierarchical transition levels. The model results in an effective reduction of KMC simulation steps by utilizing a classification scheme of transition levels for thermally activated atomistic diffusion processes. Thermally activated atomistic movements

  11. PATTERN FORMATION DURING DEVELOPMENT OF THE EMBRYONIC CEREBELLUM

    OpenAIRE

    Richard Hawkes

    2012-01-01

    The patterning of the embryonic cerebellum is vital to establish the elaborate zone and stripe architecture of the adult. This review considers early stages in cerebellar Purkinje cell patterning, from the organization of the ventricular zone to the development of Purkinje cell clusters – the precursors of the adult stripes.

  12. Pattern formation during development of the embryonic cerebellum

    OpenAIRE

    Dastjerdi, F. V.; Consalez, G G; Hawkes, R

    2012-01-01

    The patterning of the embryonic cerebellum is vital to establish the elaborate zone and stripe architecture of the adult. This review considers early stages in cerebellar Purkinje cell patterning, from the organization of the ventricular zone to the development of Purkinje cell clusters—the precursors of the adult stripes.

  13. Finger-like pattern formation in dilute surfactant pentaethylene glycol monododecyl ether solutions

    Science.gov (United States)

    Kubo, Yoshihide; Yokoyama, Yasuhiro; Tanaka, Shinpei

    2013-04-01

    We report here peculiar finger-like patterns observed during the phase separation process of dilute micellar pentaethylene glycol monododecyl ether solutions. The patterns were composed of parallel and periodic threads of micelle-rich domains. Prior to this pattern formation, the phase separation always started with the appearance of water-rich domains rimmed by the micelle-rich domains. It was found that these rims played a significant role in the pattern formation. We explain this pattern formation using a simple simulation model with disconnectable springs. The simulation results suggested that the spatially inhomogeneous elasticity or connectivity of a transient gel of worm-like micelles was responsible for the rim formation. The rims thus formed lead rim-induced nucleation, growth, and elongation of the domains owing to their small mobility and the elastic frustration around them. These rim-induced processes eventually produce the observed finger-like patterns.

  14. [A study on family pattern and psychological aspects of parent and child].

    Science.gov (United States)

    Seo, M H; Hong, M S

    1988-12-01

    This study reviews the relationship between family patterns and psychological aspects of the mother-child relationship. As the population increase in Korea will reach 50 million in 2020, population policy must deal with population quality. The data come from 118 5th and 6th grade students and their mothers. Survey results shows that the number of children and the family type are related to mothers' child rearing attitudes. Mothers in nuclear families tended to be warmer and freer towards their children than others. Family type was not related to the self-esteem of children, and the number of siblings showed a weak relationship. Children with siblings have stronger self-esteem. Birth order and younger sibling spacing had a stronger relationship with self-esteem. First borns and those who had younger siblings within a 2-year interval had the weakest self-esteem. Since families are becoming smaller, child quality is becoming more important. Not only family size but also family type, birth order, and spacing need to be considered for the psychological well-being of the population. PMID:12342280

  15. Dynamics of skeletal pattern formation in developing chick limb.

    Science.gov (United States)

    Newman, S A; Frisch, H L

    1979-08-17

    During development of the embryonic chick limb the skeletal pattern is laid out as cartilaginous primordia, which emerge in a proximodistal sequence over a period of 4 days. The differentiation of cartilage is preceded by changes in cellular contacts at specific locations in the precartilage mesenchyme. Under realistic assumptions, the biosynthesis and diffusion through the extracellular matrix of a cell surface protein, such as fibronectin, will lead to spatial patterns of this molecule that could be the basis of the emergent primordia. As cellular differentiation proceeds, the size of the mesenchymal diffusion chamber is reduced in descrete steps, leading to sequential reorganizations of the morphogen pattern. The successive patterns correspond to observed rows of skeletal elements, whose emergence, in theory and in practice, depends on the maintenance of a unique boundary condition at the limb bud apex. PMID:462174

  16. Endothelial cell motility, coordination and pattern formation during vasculogenesis.

    Science.gov (United States)

    Czirok, Andras

    2013-01-01

    How vascular networks assemble is a fundamental problem of developmental biology that also has medical importance. To explain the organizational principles behind vascular patterning, we must understand how can tissue level structures be controlled through cell behavior patterns like motility and adhesion that, in turn, are determined by biochemical signal transduction processes? We discuss the various ideas that have been proposed as mechanisms for vascular network assembly: cell motility guided by extracellular matrix alignment (contact guidance), chemotaxis guided by paracrine and autocrine morphogens, and multicellular sprouting guided by cell-cell contacts. All of these processes yield emergent patterns, thus endothelial cells can form an interconnected structure autonomously, without guidance from an external pre-pattern. PMID:23857825

  17. Pattern formation in a model of photochemical reaction

    OpenAIRE

    Sakaguchi, Hidetsugu; Kijima, Daishiro; Chatani, Shunsuke; Hattori, Toshiaki

    2012-01-01

    Stripe and columnar patterns were experimentally found in photopolymer films during irradiation of collimated UV light. We propose a mathematical model of photopolymerization, perform numerical simulation, and find a spatially periodic columnar structure.

  18. Resonant matter: pattern correlates of process-in-formation

    OpenAIRE

    Báez, Manuel Antonio

    2013-01-01

    Through the aid of ever advancing technology, the analysis of complex phenomena offers us more comprehensive insights regarding the intricate inner workings of Nature’s dynamic processes. Through such digital simulations (i.e., of fluid, aero, neuro and vibratory dynamics), the operations and flow of energy are revealed as highly patterned process-structures of activity. These vivid configurations often resemble and correlate with the patterns and motifs found at different scales throughout N...

  19. Endothelial cell motility, coordination and pattern formation during vasculogenesis

    OpenAIRE

    Czirok, Andras

    2013-01-01

    How vascular networks assemble is a fundamental problem of developmental biology that also has medical importance. To explain the organizational principles behind vascular patterning, we must understand how can tissue level structures be controlled through cell behavior patterns like motility and adhesion that, in turn, are determined by biochemical signal transduction processes? We discuss the various ideas that have been proposed as mechanisms for vascular network assembly: cell motility gu...

  20. Formation, dynamics and statistics of patterns, v.1

    CERN Document Server

    Kawasaki, K; Onuki, A

    1990-01-01

    Patterns are becoming the focal point of many areas of scientific endeavour in recent years owing to the progress of computer science, laboratory experiments and observations, and analytical tools. This book brings together articles by the leading experts in this field. The following topics are discussed in this volume: current status of pattern research with emphasis on real phenomena and new theoretical concepts; interdisciplinary subjects involving Statistical Physics, Condensed Matter Physics, Fluid Mechanics, Nonequilibrium and Nonlinear Phenomena.

  1. Pattern Formation in Mississippi Valley-Type Deposits

    Science.gov (United States)

    Kelka, Ulrich; Koehn, Daniel

    2015-04-01

    Alternating, monomineralic dark and white bands are common features of ore hosting dolostones which are generally termed Zebra textures. These structures consist of coarse grained light and fine grained dark layers and accompany ore bodies of the Mississippi Valley-Type (MVT) worldwide. These deposits frequently develop in large hydrothermal systems, located in the flanks of foreland basins or in fold and thrust belts. The microstructural- and microchemical analysis in this study were performed on samples which were collected in the San Vicente mine. This large MVT deposit is hosted in Triassic/Jurassic Platform Carbonates located in an east-vergent fold and thrust belt of the Peruvian Andes. The thin sections were analyzed with petrographic- and scanning electron microscope. It is observed that one common striking feature is the high density of second-phase particles in the dark bands, whereas the coarser grained layers are virtually particle free. Furthermore, the particle distribution is found to be non-random. The highest particle densities in the samples occur on grain boundaries in the dark bands implying that grain boundaries can capture particles. Based on recent theories and the additional analytical findings, we developed a numerical simulation to study the pattern formation. The modelling is performed in 2D at the scale of a thin section, using a boundary-model coupled with a lattice-particle-code. During the simulation two processes are active, first a reaction takes place that replaces calcite with dolomite driven by a fluid that infiltrates the model, followed by a grain growth processes with an average grain size increase as a function of surface energy reduction. Fluid infiltration in the rock is modelled assuming Darcy Flow and an advection-diffusion equation coupled with a reaction which is a function of concentration. The reaction increases permeability of the solid and thus enhances infiltration. The reaction front in the model shifts particles

  2. Pattern formation of underwater sand ripples with a skewed drive.

    Science.gov (United States)

    Bundgaard, F; Ellegaard, C; Scheibye-Knudsen, K; Bohr, T; Sams, T

    2004-12-01

    In this paper we present an experimental study of the dynamics of underwater sand ripples when a regular pattern of ripples is subjected to a skewed oscillatory flow, i.e., one not perpendicular to the direction of the ripple crests. Striking patterns with new, superposed ripples on top of the original ones occur very quickly with a characteristic angle, which is, in general, not perpendicular to the flow. A slower, more complex transition then follows, leading to the final state where the ripples are again perpendicular to the flow. We investigate the variation of the superposed pattern as a function of the direction, amplitude, and frequency of the drive, and as a function of the viscosity (by changing the temperature). We quantify the dynamics of the entire transition process and finally study the grain motion around idealized (solid) skewed ripples. This leads to a characteristic mean path of a single particle. The path has a shape close to a parallelogram, with no apparent connection to the pattern of real, superposed ripples. On the other hand, a thin layer of sand sprinkled on the solid ripples leads to qualitatively similar patterns. PMID:15697484

  3. Characteristics of pattern formation and evolution in approximations of Physarum transport networks.

    Science.gov (United States)

    Jones, Jeff

    2010-01-01

    Most studies of pattern formation place particular emphasis on its role in the development of complex multicellular body plans. In simpler organisms, however, pattern formation is intrinsic to growth and behavior. Inspired by one such organism, the true slime mold Physarum polycephalum, we present examples of complex emergent pattern formation and evolution formed by a population of simple particle-like agents. Using simple local behaviors based on chemotaxis, the mobile agent population spontaneously forms complex and dynamic transport networks. By adjusting simple model parameters, maps of characteristic patterning are obtained. Certain areas of the parameter mapping yield particularly complex long term behaviors, including the circular contraction of network lacunae and bifurcation of network paths to maintain network connectivity. We demonstrate the formation of irregular spots and labyrinthine and reticulated patterns by chemoattraction. Other Turing-like patterning schemes were obtained by using chemorepulsion behaviors, including the self-organization of regular periodic arrays of spots, and striped patterns. We show that complex pattern types can be produced without resorting to the hierarchical coupling of reaction-diffusion mechanisms. We also present network behaviors arising from simple pre-patterning cues, giving simple examples of how the emergent pattern formation processes evolve into networks with functional and quasi-physical properties including tensionlike effects, network minimization behavior, and repair to network damage. The results are interpreted in relation to classical theories of biological pattern formation in natural systems, and we suggest mechanisms by which emergent pattern formation processes may be used as a method for spatially represented unconventional computation. PMID:20067403

  4. Effect of gel network on pattern formation in the ferrocyanide-iodate-sulfite reaction.

    Science.gov (United States)

    Ueno, Tomonaga; Yoshida, Ryo

    2011-06-01

    Stationary patterns have been researched experimentally since the discovery of the Turing pattern in the chlorite-iodide-malonic acid (CIMA) reaction and the self-replicating spot pattern in the ferrocyanide-iodate-sulfite (FIS) reaction. In this study, we reproduced the pattern formation in the FIS reaction by using poly(acrylamide) gels. Gels with different swelling ratios were prepared to use as a medium. The effect of the swelling ratio was compared with the effect of thickness. It was found that the swelling ratio greatly influenced pattern formation. Oscillating spot patterns appeared at high swelling ratios, and lamellar patterns appeared at a low swelling ratio. Self-replicating spot patterns appeared in between the two areas. The front velocities, which were observed in the initial stage of pattern formation, depended on the swelling ratio. Furthermore, this dependence obeys the free volume theory of diffusion. These results provide evidence that the change in front velocities is caused by a change in diffusion. Pattern formation can be controlled not only by thickness but also by swelling ratio, which may be useful for creating novel pattern templates. PMID:21557556

  5. A Broad Dynamical Model for Pattern Formation by Lateral Inhibition

    CERN Document Server

    Arcak, Murat

    2012-01-01

    Many patterning events in multi-cellular organisms rely on cell-to-cell contact signaling, such as the Notch pathway in metazoans. A particularly interesting phenomenon in this form of communication is lateral inhibition where a cell that adopts a particular fate inhibits its immediate neighbors from doing the same. Dynamical models are of great interest for understanding the circuit topologies involved in lateral inhibition and for predicting the associated patterns. Several simplified models have been employed for Notch signalling pathways in the literature. The objective of this paper is to present an abstract dynamical model that captures the essential features of lateral inhibition and to demonstrate with dynamical systems techniques that these features indeed lead to patterning.

  6. Pattern formation in solutal convection: vermiculated rolls and isolated cells

    Science.gov (United States)

    Cartwright, Julyan H. E.; Piro, Oreste; Villacampa, Ana I.

    2002-11-01

    Observations of the peculiar behaviour of a drink of liqueur topped with cream led us to perform experiments showing that the instability is a convection phenomenon that arises through destabilizing surface-tension forces. The convection is solutal: driven by gradients of concentration of a solute, rather than by heat gradients as in the more commonly studied thermal convection. The convective patterns, vermiculated rolls and isolated cells, are quite unlike the usual planforms. They are associated with an elastic surface film, and the Marangoni number is high, characteristic of solutal convection. We have conducted further experiments that reproduce these patterns in simpler working fluids.

  7. LETTER: Self-organized pattern formation and noise-induced control based on particle computations

    Science.gov (United States)

    Rohlf, Thimo; Bornholdt, Stefan

    2005-12-01

    We propose a new non-equilibrium model for spatial pattern formation based on local information transfer. Unlike most standard models of pattern formation it is not based on the Turing instability or initially laid down morphogen gradients. Information is transmitted through the system via particle-like excitations whose collective dynamics results in pattern formation and control. Here, a simple problem of domain formation is addressed by means of this model in an implementation as stochastic cellular automata, and then generalized to a system of coupled dynamical networks. One observes stable pattern formation, even in the presence of noise and cell flow. Noise contributes through the production of quasi-particles to de novo pattern formation as well as to robust control of the domain boundary position. Pattern proportions are scale independent as regards system size. The dynamics of pattern formation is stable over large parameter ranges, with a discontinuity at vanishing noise and a second-order phase transition at increased cell flow.

  8. Pattern formation in the bistable Gray-Scott model

    DEFF Research Database (Denmark)

    Mazin, W.; Rasmussen, K.E.; Mosekilde, Erik;

    1996-01-01

    The paper presents a computer simulation study of a variety of far-from-equilibrium phenomena that can arise in a bistable chemical reaction-diffusion system which also displays Turing and Hopf instabilities. The Turing bifurcation curve and the wave number for the patterns of maximum linear growth...

  9. Pattern formation in the wake of triggered pushed fronts

    Science.gov (United States)

    Goh, Ryan; Scheel, Arnd

    2016-08-01

    Pattern-forming fronts are often controlled by an external stimulus which progresses through a stable medium at a fixed speed, rendering it unstable in its wake. By controlling the speed of excitation, such stimuli, or ‘triggers’, can mediate pattern forming fronts which freely invade an unstable equilibrium and control which pattern is selected. In this work, we analytically and numerically study when the trigger perturbs an oscillatory pushed free front. In such a situation, the resulting patterned front, which we call a pushed trigger front, exhibits a variety of phenomenon, including snaking, non-monotonic wave-number selection, and hysteresis. Assuming the existence of a generic oscillatory pushed free front, we use heteroclinic bifurcation techniques to prove the existence of trigger fronts in an abstract setting motivated by the spatial dynamics approach. We then derive a leading order expansion for the selected wave-number in terms of the trigger speed. Furthermore, we show that such a bifurcation curve is governed by the difference of certain strong-stable and weakly-stable spatial eigenvalues associated with the decay of the free pushed front. We also study prototypical examples of these phenomena in the cubic-quintic complex Ginzburg Landau equation and a modified Cahn–Hilliard equation.

  10. Pattern formation in the bistable Gray-Scott model

    DEFF Research Database (Denmark)

    Mazin, W.; Rasmussen, K.E.; Mosekilde, Erik; Borckmans, P.; Dewel, G.

    The paper presents a computer simulation study of a variety of far-from-equilibrium phenomena that can arise in a bistable chemical reaction-diffusion system which also displays Turing and Hopf instabilities. The Turing bifurcation curve and the wave number for the patterns of maximum linear growth...

  11. Spontaneous tunable Turing pattern formation for coherent high-power THz radiation

    CERN Document Server

    Huang, Shu-Wei; Yang, Shang-Hua; Yu, Mingbin; Kwong, Dim-Lee; Zelevinsky, T; Jarrahi, Mona; Wong, Chee Wei

    2016-01-01

    The spontaneous breaking of symmetry and homogeneity through dissipative pattern formation is a fundamental question in developmental biology, molecular biochemistry, mathematics and nonlinear physics. Self-organized patterns arise in nature, such as pigmentation in animals, tree branching fractals, Prigogine non-equilibrium chemical bifurcations, and are postulated by Turing to occur from diffusion-reaction driven instabilities. In spite of the spontaneous nature, these threshold-dependent patterns - when formed - can potentially be remarkably robust in the presence of noise. Here we report the spontaneous Turing pattern formation in chip-scale nonlinear oscillators, developing a precision frequency comb in the solid-state. The stationary Turing pattern is discretely tunable across 430 GHz on a THz carrier, with a sideband non-uniformity measured down to 1 part in 1.5x10^15. Local mode hybridizations in the nonlinear ring oscillator seeds the coherent pattern formation and phase matching, to obtain a record ...

  12. Pattern formation of cortical microtubules and cellulose microfibrils

    NARCIS (Netherlands)

    Lindeboom, J.J.

    2012-01-01

    In this thesis we study the roles of microtubules at the plasma membrane and the cellulose microfibrils in the cell wall and how they are organized. This topic is introduces in chapter 1. In chapter 2 we study the formation of the transverse cortical microtubule array that is characteristic for elon

  13. Fluctuation-Induced Pattern Formation in a Surface Reaction

    DEFF Research Database (Denmark)

    Starke, Jens; Reichert, Christian; Eiswirth, Markus;

    2006-01-01

    Spontaneous nucleation, pulse formation, and propagation failure have been observed experimentally in CO oxidation on Pt(110) at intermediate pressures ($\\approx 10^{-2}$mbar). This phenomenon can be reproduced with a stochastic model which includes temperature effects. Nucleation occurs randomly...

  14. Pattern Formation in Predator-Prey Model with Delay and Cross Diffusion

    Directory of Open Access Journals (Sweden)

    Xinze Lian

    2013-01-01

    Full Text Available We consider the effect of time delay and cross diffusion on the dynamics of a modified Leslie-Gower predator-prey model incorporating a prey refuge. Based on the stability analysis, we demonstrate that delayed feedback may generate Hopf and Turing instability under some conditions, resulting in spatial patterns. One of the most interesting findings is that the model exhibits complex pattern replication: the model dynamics exhibits a delay and diffusion controlled formation growth not only to spots, stripes, and holes, but also to spiral pattern self-replication. The results indicate that time delay and cross diffusion play important roles in pattern formation.

  15. Probabilistic Analysis of Pattern Formation in Monotonic Self-Assembly.

    Science.gov (United States)

    Moore, Tyler G; Garzon, Max H; Deaton, Russell J

    2015-01-01

    Inspired by biological systems, self-assembly aims to construct complex structures. It functions through piece-wise, local interactions among component parts and has the potential to produce novel materials and devices at the nanoscale. Algorithmic self-assembly models the product of self-assembly as the output of some computational process, and attempts to control the process of assembly algorithmically. Though providing fundamental insights, these computational models have yet to fully account for the randomness that is inherent in experimental realizations, which tend to be based on trial and error methods. In order to develop a method of analysis that addresses experimental parameters, such as error and yield, this work focuses on the capability of assembly systems to produce a pre-determined set of target patterns, either accurately or perhaps only approximately. Self-assembly systems that assemble patterns that are similar to the targets in a significant percentage are "strong" assemblers. In addition, assemblers should predominantly produce target patterns, with a small percentage of errors or junk. These definitions approximate notions of yield and purity in chemistry and manufacturing. By combining these definitions, a criterion for efficient assembly is developed that can be used to compare the ability of different assembly systems to produce a given target set. Efficiency is a composite measure of the accuracy and purity of an assembler. Typical examples in algorithmic assembly are assessed in the context of these metrics. In addition to validating the method, they also provide some insight that might be used to guide experimentation. Finally, some general results are established that, for efficient assembly, imply that every target pattern is guaranteed to be assembled with a minimum common positive probability, regardless of its size, and that a trichotomy exists to characterize the global behavior of typical efficient, monotonic self-assembly systems

  16. Dynamic array generation and pattern formation for optical tweezers

    DEFF Research Database (Denmark)

    Mogensen, P.C.; Glückstad, J.

    2000-01-01

    The generalised phase contrast approach is used for the generation of optical arrays of arbitrary beam shape, suitable for applications in optical tweezers for the manipulation of biological specimens. This approach offers numerous advantages over current techniques involving the use of computer-......-generated holograms or diffractive optical elements. We demonstrate a low-loss system for generating intensity patterns suitable for the trapping and manipulation of small particles or specimens....

  17. Miniaturized pattern formation in elastic films cast on sinusoidally patterned substrates.

    Science.gov (United States)

    Annepu, Hemalatha; Sarkar, Jayati

    2014-10-21

    The various morphologies that are formed when van der Waals forces or electric field is induced between film cast on a sinusoidal substrate and in contact proximity with a contactor or electrode are studied. Remarkably smaller length scales are achieved (λc Waals interactions, the patterns are uniformly formed throughout the film but are not regularly ordered. When electric field is used at critical voltage, more ordered, localized patterns are formed at the zones of large local interaction strengths. When these patterns are evolved by increasing the applied voltage, coexistence of all three phases-cavities, stripes, and columns-is observed throughout the film. The localized patterns that are initially formed vary with the voltage applied and strongly dictate the phases of evolution. A patterned substrate/patterned contactor assembly can be made to operate like its unpatterned counterpart by making the interaction strength same everywhere and yet yield uniform, regularly ordered, highly miniaturized patterns. Such patterns are very useful in various applications like microfluidics; they are formed with great ease and can be morphologically tuned by tuning the externally applied electric field. PMID:25238212

  18. Nanoparticles dynamics on a surface: fractal pattern formation and fragmentation

    DEFF Research Database (Denmark)

    Dick, Veronika V.; Solov'yov, Ilia; Solov'yov, Andrey V.

    2010-01-01

    In this paper we review our recent results on the formation and the post-growth relaxation processes of nanofractals on surface. For this study we developed a method which describes the internal dynamics of particles in a fractal and accounts for their diffusion and detachment. We demonstrate that...... these kinetic processes determine the final shape of the islands on surface after post-growth relaxation. We consider different scenarios of fractal relaxation and analyze the time evolution of the island's morphology....

  19. Patterns of partnership formation among lone mothers in Russia

    OpenAIRE

    Cordula Zabel

    2008-01-01

    This study examines the determinants of partnership formation among lone mothers in Russia, using data from the Russian Generations and Gender Survey (GGS) and the Education and Employment Survey (EES). The central research question is whether difficult economic circumstances pressure lone mothers to enter new partnerships sooner than they would under other circumstances, limiting their freedom of choice of type of living arrangement. The empirical results show that while occupation influence...

  20. A mechanistic description of the formation and evolution of vegetation patterns

    Directory of Open Access Journals (Sweden)

    R. Foti

    2012-07-01

    Full Text Available Vegetation patterns are a common and well-defined characteristic of many landscapes. In this paper we explore some of the physical mechanisms responsible for the establishment of self-organized, non-random vegetation patterns that arise at the hillslope scale in many areas of the world, especially in arid and semi-arid regions. In doing so, we provide a fundamental mechanistic understanding of the dynamics of vegetation pattern formation and development. Reciprocal effects of vegetation on the hillslope thermodynamics, runoff production and run-on infiltration, root density, surface albedo and soil moisture content are analyzed. In particular, we: (1 present a physically based mechanistic description of processes leading to vegetation pattern formation; (2 quantify the relative impact of each process on pattern formation; and (3 describe the relationships between vegetation patterns and the climatic, hydraulic and topographic characteristics of the system. We validate the model by comparing simulations with observed natural patterns in the areas of Niger near Niamey and Somalia near Garoowe. Our analyses suggest that the phenomenon of pattern formation is primarily driven by run-on infiltration and mechanisms of facilitation/inhibition among adjacent vegetation groups mediated by vegetation effects on soil properties and controls on soil moisture and albedo. Nonetheless, even in presence of those mechanisms, patterns arise only when the climatic conditions, particularly annual precipitation and net radiation, are favorable.

  1. A mechanistic description of the formation and evolution of vegetation patterns

    Directory of Open Access Journals (Sweden)

    R. Foti

    2013-01-01

    Full Text Available Vegetation patterns are a common and well-defined characteristic of many landscapes. In this paper we explore some of the physical mechanisms responsible for the establishment of self-organized, non-random vegetation patterns that arise at the hillslope scale in many areas of the world, especially in arid and semi-arid regions. In doing so, we provide a fundamental mechanistic understanding of the dynamics of vegetation pattern formation and development. Reciprocal effects of vegetation on the hillslope thermodynamics, runoff production and run-on infiltration, root density, surface albedo and soil moisture content are analyzed. In particular, we: (1 present a physically based mechanistic description of processes leading to vegetation pattern formation; (2 quantify the relative impact of each process on pattern formation; and (3 describe the relationships between vegetation patterns and the climatic, hydraulic and topographic characteristics of the system. We validate the model by comparing simulations with observed natural patterns in the areas of Niger near Niamey and Somalia near Garoowe. Our analyses suggest that the phenomenon of pattern formation is primarily driven by run-on infiltration and mechanisms of facilitation/inhibition among adjacent vegetation groups, mediated by vegetation effects on soil properties and controls on soil moisture and albedo. Nonetheless, even in presence of those mechanisms, patterns arise only when the climatic conditions, particularly annual precipitation and net radiation, are favorable.

  2. Pattern formation in semiconductors: control of spatio-temporal dynamics

    Energy Technology Data Exchange (ETDEWEB)

    Schoell, E. [Institut fuer Theoretische Physik, Technische Universitaet Berlin, Hardenbergstr. 36, 10623 Berlin (Germany)

    2004-08-01

    Semiconductors driven far from thermodynamic equilibrium by an applied dc voltage exhibit a variety of spatio-temporal electronic instabilities including complex and chaotic scenarios. We study stabilization of chaotic spatio-temporal patterns in spatially extended semiconductor models by time delayed feedback control. Different control schemes, e.g., a diagonal control matrix, or global control, or combinations of both, are compared. Specifically, we use two models of semiconductor nanostructures which are of particular current interest: (i) superlattice, (ii) double-barrier resonant-tunneling diode. (Abstract Copyright [2004], Wiley Periodicals, Inc.)

  3. Pattern Formation and Growth Kinetics in Eutectic Systems

    Energy Technology Data Exchange (ETDEWEB)

    Teng, Jing [Iowa State Univ., Ames, IA (United States)

    2007-01-01

    Growth patterns during liquid/solid phase transformation are governed by simultaneous effects of heat and mass transfer mechanisms, creation of new interfaces, jump of the crystallization units from liquid to solid and their rearrangement in the solid matrix. To examine how the above processes influence the scale of microstructure, two eutectic systems are chosen for the study: a polymeric system polyethylene glycol-p-dibromobenzene (PEG-DBBZ) and a simple molecular system succinonitrile (SCN)-camphor. The scaling law for SCN-camphor system is found to follow the classical Jackson-Hunt model of circular rod eutectic, where the diffusion in the liquid and the interface energy are the main physics governing the two-phase pattern. In contrast, a significantly different scaling law is observed for the polymer system. The interface kinetics of PEG phase and its solute concentration dependence thus have been critically investigated for the first time by directional solidification technique. A model is then proposed that shows that the two-phase pattern in polymers is governed by the interface diffusion and the interface kinetics. In SCN-camphor system, a new branch of eutectic, elliptical shape rodl, is found in thin samples where only one layer of camphor rods is present. It is found that the orientation of the ellipse can change from the major axis in the direction of the thickness to the direction of the width as the velocity and/or the sample thickness is decreased. A theoretical model is developed that predicts the spacing and orientation of the elliptical rods in a thin sample. The single phase growth patterns of SCN-camphor system were also examined with emphasis on the three-dimensional single cell and cell/dendrite transition. For the 3D single cell in a capillary tube, the entire cell shape ahead of the eutectic front can be described by the Saffmann-Taylor finger only at extremely low growth rate. A 3D directional solidification model is developed to

  4. Dynamics of Surfactants Spreading on Gel-like Materials: Cracking and Pattern Formation

    OpenAIRE

    Spandagos, Constantine; Luckham, Paul; Matar, Omar

    2010-01-01

    We study the dynamics of surfactants spreading on gels, paying particular attention to the pattern formation accompanying the flow. The latter results from gel-cracking, promoted by Marangoni stresses, and resemble starbursts.

  5. A survey on pattern formation of autonomous mobile robots: asynchrony, obliviousness and visibility

    International Nuclear Information System (INIS)

    A robot system consists of autonomous mobile robots each of which repeats Look-Compute-Move cycles, where the robot observes the positions of other robots (Look phase), computes the track to the next location (Compute phase), and moves along the track (Move phase). In this survey, we focus on self-organization of mobile robots, especially their power of forming patterns. The formation power of a robot system is the class of patterns that the robots can form, and existing results show that the robot system's formation power is determined by their asynchrony, obliviousness, and visibility. We briefly survey existing results, with impossibilities and pattern formation algorithms. Finally, we present several open problems related to the pattern formation problem of mobile robots

  6. Effects of exchange randomness on two-dimensional magnetic domain pattern formation

    International Nuclear Information System (INIS)

    Magnetic domain pattern formation is known to be influenced by structural disorder. We perform numerical simulations using a model of two-dimensional magnetic domain pattern formation focusing on effects of exchange randomness. The model is a scalar model with exchange and dipolar interactions, which includes disorder in the exchange interactions. Morphological change of the patterns with the increase in the disorder is observed. The distribution of the local magnetization becomes broader with the increase of the disorder. For a definite realization of the randomness, many patterns can appear. - Highlights: • Exchange randomness is introduced to the model of magnetic domain pattern formation. • Hysteretic behavior shows crossover as the randomness increases. • The crossover is observed also in the time evolution of the structure factor

  7. Pattern Formation of Bacterial Colonies by Escherichia coli

    Science.gov (United States)

    Tokita, Rie; Katoh, Takaki; Maeda, Yusuke; Wakita, Jun-ichi; Sano, Masaki; Matsuyama, Tohey; Matsushita, Mitsugu

    2009-07-01

    We have studied the morphological diversity and change in bacterial colonies, using the bacterial species Escherichia coli, as a function of both agar concentration Ca and nutrient concentration Cn. We observed various colony patterns, classified them into four types by pattern characteristics and established a morphological diagram by dividing it into four regions. They are regions A [diffusion-limited aggregation (DLA)-like], B (Eden-like), C (concentric-ring), and D (fluid-spreading). In particular, we have observed a concentric-ring colony growth for E. coli. We focused on the periodic growth in region C and obtained the following results: (i) A colony grows cyclically with the growing front repeating an advance (migration phase) and a momentary rest (consolidation phase) alternately. (ii) The growth width L and the bulge width W in one cycle decrease asymptotically to certain values, when Ca is increased. (iii) L does not depend on Cn, while W is an increasing function of Cn. Plausible mechanisms are proposed to explain the experimental results, by comparing them with those obtained for other bacterial species such as Proteus mirabilis and Bacillus subtilis.

  8. Ternary eutectic dendrites: Pattern formation and scaling properties

    OpenAIRE

    Rátkai, László; Szállás, Attila; Pusztai, Tamás; Mohri, Tetsuo; Gránásy, László

    2015-01-01

    Extending previous work [T. Pusztai, L. R\\'atkai, A. Sz\\'all\\'as, and L. Gr\\'an\\'asy, Phys. Rev. E {\\bf 87}, 032402 (2013)], we have studied the formation of eutectic dendrites in a model ternary system within the framework of the phase-field theory. We have mapped out the domain in which two-phase dendritic structures grow. With increasing pulling velocity, the following sequence of growth morphologies is observed: flat front lamellae $\\rightarrow$ eutectic colonies $\\rightarrow$ eutectic de...

  9. Reaction-diffusion-ODE systems: de-novo formation of irregular patterns and model reduction

    OpenAIRE

    Härting, Steffen Johannes

    2016-01-01

    Classical models of pattern formation in systems of reaction-diffusion equations are based on diffusion-driven instability (DDI) of constant stationary solutions. The destabilisation may lead to emergence of stable, regular Turing patterns formed around the destabilised equilibrium. In this thesis it is shown that coupling reaction-diffusion equations with ordinary differential equations may lead to de-novo formation of far from equilibrium steady states. In particular, conditions for so call...

  10. Pattern formation in the thiourea-iodate-sulfite system: Spatial bistability, waves, and stationary patterns

    Science.gov (United States)

    Horváth, Judit; Szalai, István; De Kepper, Patrick

    2010-06-01

    We present a detailed study of the reaction-diffusion patterns observed in the thiourea-iodate-sulfite (TuIS) reaction, operated in open one-side-fed reactors. Besides spatial bistability and spatio-temporal oscillatory dynamics, this proton autoactivated reaction shows stationary patterns, as a result of two back-to-back Turing bifurcations, in the presence of a low-mobility proton binding agent (sodium polyacrylate). This is the third aqueous solution system to produce stationary patterns and the second to do this through a Turing bifurcation. The stationary pattern forming capacities of the reaction are explored through a systematic design method, which is applicable to other bistable and oscillatory reactions. The spatio-temporal dynamics of this reaction is compared with that of the previous ferrocyanide-iodate-sulfite mixed Landolt system.

  11. Pattern formation in a gene network model with boundary shape dependence

    Science.gov (United States)

    Diambra, Luis; da Fontoura Costa, Luciano

    2006-03-01

    A fundamental task in developmental biology is to identify the mechanisms which drive morphogenesis. Traditionally pattern formation have been modeled mainly using Turing-type mechanisms, where complex patterns arise by symmetry breaking. However, there is a growing experimental evidence that the influence of signals derived from surrounding tissues can contribute to the patterning processes. In this paper, we show that the interplay between the shape of surrounding tissues and a hierarchically organized gene regulatory network can be able to induce stable complex patterns. The rise of these patterns depends strongly on the shape of the surrounding tissues.

  12. Pattern formation in particle systems driven by color field

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    The structural evolution of systems with two kinds of particles driven in opposite directions, i.e., driven by a color field, is investigated by molecular dynamics simulations. Gaussian thermostat,a common treatment to restrict the thermal velocity of the particles in the systems, has been used so as to account for the dissipation of heat and allow the system to reach a steady state. It has been found that with the increase of the strngth of driving force (F), the system undergoes an obvious structural transition from an initially random mixing state to a state characterized by separate lanes and in each lane only one kind of particles exists. The analysis shows that the reason for the formation of lane structure is not only the increase of F but also the variation of particle friction coefficient. While using Ganssian thermostat the particle friction coefficient becomes a function of F. Increasing F leads to high particle friction coefficient and inevitably results in lane formation for strong enough driving force. When lifting the effect of F on friction coefficient and choosing a constant friction coefficient,our results show that for a given F there always exists a critical value of friction coefficient higher than which the system will develop into lane structure.

  13. Pattern formation in crystal growth under parabolic shear flow.

    Science.gov (United States)

    Ueno, K

    2003-08-01

    Morphological instability of the solid-liquid interface occurring in a crystal growing from an undercooled thin liquid bounded on one side by a free surface and flowing down inclined plane, is investigated by a linear stability analysis under shear flow. It is found that restoring forces due to gravity and surface tension is an important factor for stabilization of the solid-liquid interface on long length scales. This is a stabilizing effect different from the Gibbs-Thomson effect. A particular long wavelength mode of about 1 cm of wavy pattern, observed on the surface of icicles covered with a thin layer of flowing water is obtained from the dispersion relation, including the effect of flow and restoring forces. PMID:14524982

  14. Chemistry aspects of the source term formation for a severe accident in a CANDU type reactor

    Energy Technology Data Exchange (ETDEWEB)

    Constantin, A.; Constantin, M. [Institute for Nuclear Research, Pitesti (Romania)

    2013-07-15

    The progression of a severe accident in a CANDU type reactor is slow because the core is surrounded by a large quantity of heavy and light water which acts as a heat sink to remove the decay heat. Therefore, the source term formation is a complex and long process involving fission products transport and releasing in the fuel matrix, thermal hydraulics of the transport fluid in the primary heat system and containment, deposition and transport of fission products, chemistry including the interaction with the dousing system, structural materials and paints, etc. The source term is strongly dependent on initial conditions and accident type. The paper presents chemistry aspects for a severe accident in a CANDU type reactor, in terms of the retention in the primary heat system. After releasing from the fuel elements, the fission products suffer a multitude of phenomena before they are partly transferred into the containment region. The most important species involved in the deposition were identified. At the same time, the influence of the break position in the transfer fractions from the primary heat system to the containment was investigated. (orig.)

  15. The formation of labyrinths, spots and stripe patterns in a biochemical approach to cardiovascular calcification

    Science.gov (United States)

    Yochelis, A.; Tintut, Y.; Demer, L. L.; Garfinkel, A.

    2008-05-01

    Calcification and mineralization are fundamental physiological processes, yet the mechanisms of calcification, in trabecular bone and in calcified lesions in atherosclerotic calcification, are unclear. Recently, it was shown in in vitro experiments that vascular-derived mesenchymal stem cells can display self-organized calcified patterns. These patterns were attributed to activator/inhibitor dynamics in the style of Turing, with bone morphogenetic protein 2 acting as an activator, and matrix GLA protein acting as an inhibitor. Motivated by this qualitative activator inhibitor dynamics, we employ a prototype Gierer Meinhardt model used in the context of activator inhibitor-based biological pattern formation. Through a detailed analysis in one and two spatial dimensions, we explore the pattern formation mechanisms of steady state patterns, including their dependence on initial conditions. These patterns range from localized holes to labyrinths and localized peaks, or in other words, from dense to sparse activator distributions (respectively). We believe that an understanding of the wide spectrum of activator inhibitor patterns discussed here is prerequisite to their biochemical control. The mechanisms of pattern formation suggest therapeutic strategies applicable to bone formation in atherosclerotic lesions in arteries (where it is pathological) and to the regeneration of trabecular bone (recapitulating normal physiological development).

  16. The formation of labyrinths, spots and stripe patterns in a biochemical approach to cardiovascular calcification

    Science.gov (United States)

    Yochelis, A.; Tintut, Y.; Demer, L. L.; Garfinkel, A.

    2008-05-01

    Calcification and mineralization are fundamental physiological processes, yet the mechanisms of calcification, in trabecular bone and in calcified lesions in atherosclerotic calcification, are unclear. Recently, it was shown in in vitro experiments that vascular-derived mesenchymal stem cells can display self-organized calcified patterns. These patterns were attributed to activator/inhibitor dynamics in the style of Turing, with bone morphogenetic protein 2 acting as an activator, and matrix GLA protein acting as an inhibitor. Motivated by this qualitative activator-inhibitor dynamics, we employ a prototype Gierer-Meinhardt model used in the context of activator-inhibitor-based biological pattern formation. Through a detailed analysis in one and two spatial dimensions, we explore the pattern formation mechanisms of steady state patterns, including their dependence on initial conditions. These patterns range from localized holes to labyrinths and localized peaks, or in other words, from dense to sparse activator distributions (respectively). We believe that an understanding of the wide spectrum of activator-inhibitor patterns discussed here is prerequisite to their biochemical control. The mechanisms of pattern formation suggest therapeutic strategies applicable to bone formation in atherosclerotic lesions in arteries (where it is pathological) and to the regeneration of trabecular bone (recapitulating normal physiological development).

  17. Genetic oscillations. A Doppler effect in embryonic pattern formation.

    Science.gov (United States)

    Soroldoni, Daniele; Jörg, David J; Morelli, Luis G; Richmond, David L; Schindelin, Johannes; Jülicher, Frank; Oates, Andrew C

    2014-07-11

    During embryonic development, temporal and spatial cues are coordinated to generate a segmented body axis. In sequentially segmenting animals, the rhythm of segmentation is reported to be controlled by the time scale of genetic oscillations that periodically trigger new segment formation. However, we present real-time measurements of genetic oscillations in zebrafish embryos showing that their time scale is not sufficient to explain the temporal period of segmentation. A second time scale, the rate of tissue shortening, contributes to the period of segmentation through a Doppler effect. This contribution is modulated by a gradual change in the oscillation profile across the tissue. We conclude that the rhythm of segmentation is an emergent property controlled by the time scale of genetic oscillations, the change of oscillation profile, and tissue shortening. PMID:25013078

  18. A mechanistic description of the formation and evolution of vegetation patterns

    OpenAIRE

    R. Foti; Ramírez, J. A.

    2013-01-01

    Vegetation patterns are a common and well-defined characteristic of many landscapes. In this paper we explore some of the physical mechanisms responsible for the establishment of self-organized, non-random vegetation patterns that arise at the hillslope scale in many areas of the world, especially in arid and semi-arid regions. In doing so, we provide a fundamental mechanistic understanding of the dynamics of vegetation pattern formation and development. Reciprocal effects of vegetation on th...

  19. Pattern formation triggered by rare events: lessons from the spread of rabies.

    OpenAIRE

    Jeltsch, F.; Müller, M S; Grimm, V; Wissel, C; Brandl, R.

    1997-01-01

    Understanding of large-scale spatial pattern formation is a key to successful management in ecology and epidemiology. Neighbourhood interactions between local units are known to contribute to large-scale patterns, but how much do they contribute and what is the role of regional interactions caused by long-distance processes? How much long-distance dispersal do we need to explain the patterns that we observe in nature? There seems to be no way to answer these questions empirically. Therefore, ...

  20. Structure Formation of Ultrathin PEO Films at Solid Interfaces—Complex Pattern Formation by Dewetting and Crystallization

    Directory of Open Access Journals (Sweden)

    Hans-Georg Braun

    2013-02-01

    Full Text Available The direct contact of ultrathin polymer films with a solid substrate may result in thin film rupture caused by dewetting. With crystallisable polymers such as polyethyleneoxide (PEO, molecular self-assembly into partial ordered lamella structures is studied as an additional source of pattern formation. Morphological features in ultrathin PEO films (thickness < 10 nm result from an interplay between dewetting patterns and diffusion limited growth pattern of ordered lamella growing within the dewetting areas. Besides structure formation of hydrophilic PEO molecules, n-alkylterminated (hydrophobic PEO oligomers are investigated with respect to self-organization in ultrathin films. Morphological features characteristic for pure PEO are not changed by the presence of the n-alkylgroups.

  1. Proceedings of the 9th Workshop on Aspects, Components, and Patterns for Infrastructure Software (ACP4IS '10)

    OpenAIRE

    2010-01-01

    Aspect-oriented programming, component models, and design patterns are modern and actively evolving techniques for improving the modularization of complex software. In particular, these techniques hold great promise for the development of "systems infrastructure" software, e.g., application servers, middleware, virtual machines, compilers, operating systems, and other software that provides general services for higher-level applications. The developers of infrastructure software are faced wit...

  2. Exploring formative e-assessment: using case stories and design patterns

    OpenAIRE

    Daly, Caroline; Pachler, Norbert; Mor, Yishay; Mellar, Harvey

    2010-01-01

    This article presents key findings from a Joint Information Systems Committee-funded project, which aimed to identify existing practices where technologies contribute to formative assessment and identify processes that take place around formative assessment where technologies play a significant role. Using a design pattern methodology, the project developed a range of cases of formative e-assessment with practitioners across a variety of settings through a series of participant workshops. Fro...

  3. One-dimensional pattern of Au nanodots by ion-beam sputtering: formation and mechanism

    Energy Technology Data Exchange (ETDEWEB)

    Kim, J-H; Ha, N-B; Kim, J-S [Department of Physics, Sook-Myung Women' s University, Seoul 140-742 (Korea, Republic of); Joe, M; Lee, K-R [Computational Science Center, Korea Institute of Science and Technology, Seoul 136-791 (Korea, Republic of); Cuerno, R, E-mail: jskim@sm.ac.kr [Departamento de Matematicas and Grupo Interdisciplinar de Sistemas Complejos (GISC), Universidad Carlos III de Madrid, Avenida de la Universidad 30, E-28911 Leganes (Spain)

    2011-07-15

    Highly ordered one-dimensional arrays of nanodots, or nanobeads, are fabricated by forming nanoripples and nanodots in sequence, entirely by ion-beam sputtering (IBS) of Au(001). This demonstrates the capability of IBS for the fabrication of sophisticated nanostructures via hierarchical self-assembly. The intricate nanobead pattern ideally serves to identify the governing mechanisms for the pattern formation: nonlinear effects, especially local redeposition and surface-confined transport, are essential both for the formation and the preservation of the one-dimensional order of the nanobead pattern.

  4. Spontaneous pattern formation in a thin film of bacteriorhodopsin with mixed absorptive-dispersive nonlinearity

    Science.gov (United States)

    Glückstad, J.; Saffman, M.

    1995-03-01

    We have observed the spontaneous formation of transverse spatial patterns in a thin film of bacteriorhodopsin with a feedback mirror. Bacteriorhodopsin has a mixed absorptive-dispersive nonlinearity at the wavelength used in the experiments (633 nm). Threshold values of the incident intensity for observation of pattern formation are found from a linear stability analysis of a model that describes bacteriorhodopsin as a sluggish saturable nonlinear medium with a complex Kerr coefficient. The calculated threshold intensity is in good agreement with the experimental observations, and the patterns are predicted to be frequency offset from the pump radiation.

  5. Pattern formation induced by cross-diffusion in a predator-prey system

    Institute of Scientific and Technical Information of China (English)

    Sun Gui-Quan; Jin Zhen; Liu Quan-Xing; Li Li

    2008-01-01

    This paper considers the Holling-Tanner model for predator-prey with self and cross-diffusion.From the Turing theory,it is believed that there is no Turing pattern formation for the equal self-diffusion coefficients.However,combined with cross-diffusion,it shows that the system will exhibit spotted pattern by both mathematical analysis and numerical simulations.Furthermore,nsynchrony of the predator and the prey in the space.The obtained results show that cross-diffusion plays an important role on the pattern formation of the predator-prey system.

  6. Analytic model for ring pattern formation by bacterial swarmers

    Science.gov (United States)

    Arouh, Scott

    2001-03-01

    We analyze a model proposed by Medvedev, Kaper, and Kopell (the MKK model) for ring formation in two-dimensional bacterial colonies of Proteus mirabilis. We correct the model to formally include a feature crucial of the ring generation mechanism: a bacterial density threshold to the nonlinear diffusivity of the MKK model. We numerically integrate the model equations, and observe the logarithmic profiles of the bacterial densities near the front. These lead us to define a consolidation front distinct from the colony radius. We find that this consolidation front propagates outward toward the colony radius with a nearly constant velocity. We then implement the corrected MKK equations in two dimensions and compare our results with biological experiment. Our numerical results indicate that the two-dimensional corrected MKK model yields smooth (rather than branched) rings, and that colliding colonies merge if grown in phase but not if grown out of phase. We also introduce a model, based on coupling the MKK model to a nutrient field, for simulating experimentally observed branched rings.

  7. Pattern Formation and Reaction Textures during Dunite Carbonation

    Science.gov (United States)

    Lisabeth, H. P.; Zhu, W.

    2015-12-01

    Alteration of olivine-bearing rocks by fluids is one of the most pervasive geochemical processes on the surface of the Earth. Serpentinized and/or carbonated ultramafic rocks often exhibit characteristic textures on many scales, from polygonal mesh textures on the grain-scale to onion-skin or kernel patterns on the outcrop scale. Strong disequilibrium between pristine ultramafic rocks and common geological fluids such as water and carbon dioxide leads to rapid reactions and coupled mechanical and chemical feedbacks that manifest as characteristic textures. Textural evolution during metasomatic reactions can control effective reaction rates by modulating dynamic porosity and therefore reactant supply and reactive surface area. We run hydrostatic experiments on thermally cracked dunites saturated with carbon dioxide bearing brine at 15 MPa confining pressure and 150°C to explore the evolution of physical properties and reaction textures as carbon mineralization takes place in the sample. Compaction and permeability reduction are observed throughout experiments. Rates of porosity and permeability changes are sensitive to pore fluid chemistry. After reaction, samples are imaged in 3-dimension (3D) using a dual-beam FIB-SEM. Analysis of the high resolution 3D microstructure shows that permeable, highly porous domains are created by olivine dissolution at a characteristic distance from pre-existing crack surfaces while precipitation of secondary minerals such as serpentine and magnesite is limited largely to the primary void space. The porous dissolution channels provide an avenue for fluid ingress, allow reactions to continue and could lead to progressive hierarchical fracturing. Initial modeling of the system indicates that this texture is the result of coupling between dissolution-precipitation reactions and the local stress state of the sample.

  8. Formation of Self-Organized Anode Patterns in Arc Discharge Simulations

    CERN Document Server

    Trelles, Juan Pablo

    2013-01-01

    Pattern formation and self-organization are phenomena commonly observed experimentally in diverse types of plasma systems, including atmospheric-pressure electric arc discharges. However, numerical simulations reproducing anode pattern formation in arc discharges have proven exceedingly elusive. Time-dependent three-dimensional thermodynamic nonequilibrium simulations reveal the spontaneous formation of self-organized patterns of anode attachment spots in the free-burning arc, a canonical thermal plasma flow established by a constant DC current between an axi-symmetric electrodes configuration in the absence of external forcing. The number of spots, their size, and distribution within the pattern depend on the applied total current and on the resolution of the spatial discretization, whereas the main properties of the plasma flow, such as maximum temperatures, velocity, and voltage drop, depend only on the former. The sensibility of the solution to the spatial discretization stresses the computational require...

  9. Ion-induced pattern formation on indium tin oxide for alignment of liquid crystals

    International Nuclear Information System (INIS)

    Indium tin oxide (ITO) is broadly used as a transparent conducting material for electrodes in optoelectronic devices. Irradiation of ITO with low energy ions can result in the formation of periodic surface nanopatterns which can serve as an alternative for the polymer alignment layer in liquid crystal devices. We investigated the formation of the ion-induced surface nanopatterns on ITO with focus on the influence of the crystalline structure of the material. We find that the crystallinity plays a crucial role in the pattern formation, with no pattern developing on an amorphous ITO surface. We discuss these findings in the context of the state-of-the-art theory for ion-induced patterning. We show that the ion-induced pattern plays a critical role in the liquid crystal alignment on ITO surfaces

  10. Ion-induced pattern formation on indium tin oxide for alignment of liquid crystals

    Energy Technology Data Exchange (ETDEWEB)

    Škereň, T., E-mail: tomas.skeren@fjfi.cvut.cz [Instituut voor Kern-en Stralingsfysica, KU Leuven, Celestijnenlaan 200D, B-3001 Leuven Belgium (Belgium); Czech Technical University in Prague, Faculty of Nuclear Sciences and Physical Engineering, Břehová 7, 115 19 Prague 1 (Czech Republic); Doornaert, D. [Laboratory for Acoustics and Thermal Physics, Department of Physics and Astronomy, KU Leuven, B-3001 Heverlee (Belgium); Wave Propagation and Signal Processing Research Group, KU Leuven Campus Kortrijk, E. Sabbelaan 53, B-8500 Kortrijk (Belgium); Glorieux, C. [Laboratory for Acoustics and Thermal Physics, Department of Physics and Astronomy, KU Leuven, B-3001 Heverlee (Belgium); Modarresi, H. [Instituut voor Kern-en Stralingsfysica, KU Leuven, Celestijnenlaan 200D, B-3001 Leuven Belgium (Belgium); Guan, T. [Departement Elektrotechniek ESAT-MICAS, KU Leuven, Kasteelpark Arenberg 10, B-3001 Leuven (Belgium); Temst, K. [Instituut voor Kern-en Stralingsfysica, KU Leuven, Celestijnenlaan 200D, B-3001 Leuven Belgium (Belgium); Vandervorst, W. [Instituut voor Kern-en Stralingsfysica, KU Leuven, Celestijnenlaan 200D, B-3001 Leuven Belgium (Belgium); IMEC, Kapeldreef 75, B-3001 Leuven (Belgium); Vantomme, A. [Instituut voor Kern-en Stralingsfysica, KU Leuven, Celestijnenlaan 200D, B-3001 Leuven Belgium (Belgium)

    2015-08-31

    Indium tin oxide (ITO) is broadly used as a transparent conducting material for electrodes in optoelectronic devices. Irradiation of ITO with low energy ions can result in the formation of periodic surface nanopatterns which can serve as an alternative for the polymer alignment layer in liquid crystal devices. We investigated the formation of the ion-induced surface nanopatterns on ITO with focus on the influence of the crystalline structure of the material. We find that the crystallinity plays a crucial role in the pattern formation, with no pattern developing on an amorphous ITO surface. We discuss these findings in the context of the state-of-the-art theory for ion-induced patterning. We show that the ion-induced pattern plays a critical role in the liquid crystal alignment on ITO surfaces.

  11. Pattern formation in vibrated beds of dry and wet granular materials

    Science.gov (United States)

    Chuan Lim, Eldin Wee

    2014-01-01

    The Discrete Element Method was coupled with a capillary liquid bridge force model for computational studies of pattern formation in vibrated granular beds containing dry or wet granular materials. Depending on the vibration conditions applied, hexagonal, stripes, or cellular pattern was observed in the dry vibrated granular bed. In each of these cases, the same hexagonal, stripes, or cellular pattern was also observed in the spatial distribution of the magnitudes of particle-particle collision forces prior to the formation of the corresponding actual pattern in physical distributions of the particles. This seemed to suggest that the pattern formation phenomenon of vibrated granular bed systems might be the result of a two-dimensional Newton's cradle effect. In the presence of a small amount of wetness, these patterns were no longer formed in the vibrated granular beds under the same corresponding set of vibration conditions. Despite the relatively much weaker capillary forces arising from the simulated liquid bridges between particles compared with particle-particle collision forces, the spatial distributions of these collision forces, physical distributions of particles, as well as time profiles of average collision forces were altered significantly in comparison with the corresponding distributions and profiles observed for the dry vibrated granular beds. This seemed to suggest the presence of a two-dimensional Stokes' cradle effect in these wet vibrated granular bed systems which disrupted the formation of patterns in the wet granular materials that would have been observed in their dry counterparts.

  12. Pattern formation during gastrulation in the sea urchin embryo.

    Science.gov (United States)

    McClay, D R; Armstrong, N A; Hardin, J

    1992-01-01

    The sea urchin embryo follows a relatively simple cell behavioral sequence in its gastrulation movements. To form the mesoderm, primary mesenchyme cells ingress from the vegetal plate and then migrate along the basal lamina lining the blastocoel. The presumptive secondary mesenchyme and endoderm then invaginate from the vegetal pole of the embryo. The archenteron elongates and extends across the blastocoel until the tip of the archenteron touches and attaches to the opposite side of the blastocoel. Secondary mesenchyme cells, originally at the tip of the archenteron, differentiate to form a variety of structures including coelomic pouches, esophageal muscles, pigment cells and other cell types. After migration of the secondary mesenchyme cells from their original position at the tip of the archenteron, the endoderm fuses with an invagination of the ventral ectoderm (the stomodaem), to form the mouth and complete the process of gastrulation. A larval skeleton is made by primary mesenchyme cells during the time of archenteron and mouth formation. A number of experiments have established that these morphogenetic movements involve a number of cell autonomous behaviors plus a series of cell interactions that provide spatial, temporal and scalar information to cells of the mesoderm and endoderm. The cell autonomous behaviors can be demonstrated by the ability of micromeres or endoderm to perform their morphogenetic functions if either is isolated and grown in culture. The requirement for cell interactions has been demonstrated by manipulative experiments where it has been shown that axial information, temporal information, spatial information and scalar information is obtained by mesoderm and endoderm from other embryonic cells.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:1299366

  13. Nanohole pattern formation on Ge by focused ion beam and broad beam

    International Nuclear Information System (INIS)

    The morphology of surfaces strongly influences optical, electrical, and magnetic properties of thin films. Using low energy ion beam sputtering different self-organized periodic patterns can be obtained. These are ripple patterns with periodicities in the nanometre range for oblique ion incidence and hexagonal dot patterns on compound materials for normal incidence. Low energy ion beam sputtering of Ge at normal incidence using a 5 keV Ga+ focused ion beam (FIB) produces periodic nanohole patterns. In this work we studied the flux dependence of nanohole formation using FIB technique and compared the results with patterns produced by broad Ga+ beam sputtering with a six orders of magnitude smaller ion flux. In both cases Ga+ ions with an energy of 5 keV at normal incidence were used. Obtaining the same results shows that nanohole formation is independent of flux over a few orders of magnitude and that rastering of the FIB does not add extra contributions.

  14. Longitudinal relations between personality traits and aspects of identity formation during adolescence.

    Science.gov (United States)

    Hill, Patrick L; Allemand, Mathias; Grob, Sabine Zehnder; Peng, Aristide; Morgenthaler, Christoph; Käppler, Christoph

    2013-04-01

    The current study focused on three aspects of identity development relevant to the adolescent years: being an authentic person, perceiving control over and consistency in one's environment, and having consistent expectations from close others. In a two-wave study of adolescents (n = 750), we examined how these aspects change over the course of a year, as well as whether these aspects correspond to the Big Five personality traits. Results indicated three important findings. First, all three aspects evidenced the capacity for change over a year, and appeared more malleable than personality traits. Second, youth higher on all aspects reported a more adaptive personality profile. Third, changes on these aspects coincide with those on personality traits over the year. Findings are discussed with respect to future directions for studying the interplay of identity and personality development. PMID:23415576

  15. Retinoic acid, local cell-cell interactions, and pattern formation in vertebrate limbs.

    Science.gov (United States)

    Bryant, S V; Gardiner, D M

    1992-07-01

    Retinoic acid (RA), a derivative of vitamin A, has remarkable effects on developing and regenerating limbs. These effects include teratogenesis, arising from RA's ability to inhibit growth and pattern formation. They also include pattern duplication, arising as a result of the stimulation of additional growth and pattern formation. In this review we present evidence that the diverse effects of RA are consistent with a singular, underlying explanation. We propose that in all cases exogenously applied RA causes the positional information of pattern formation-competent cells to be reset to a value that is posterior-ventral-proximal with respect to the limb. The diversity of outcomes can be seen as a product of the mode of application of exogenous RA (global versus local) coupled with the unifying concept that growth and pattern formation in both limb development and limb regeneration are controlled by local cell-cell interactions, as formulated in the polar coordinate model. We explore the possibility that the major role of endogenous RA in limb development is in the establishment of the limb field rather than as a diffusible morphogen that specifies graded positional information across the limb as previously proposed. Finally, we interpret the results of the recent finding that RA can turn tail regenerates into limbs, as evidence that intercalary interactions may also be involved in the formation of the primary body axis. PMID:1628749

  16. A bidimensional fluid system with competing interactions: spontaneous and induced pattern formation

    International Nuclear Information System (INIS)

    In this paper we present a study of pattern formation in bidimensional systems with competing short-range attractive and long-range repulsive interactions. The interaction parameters are chosen in such a way as to allow us to analyse two different situations: the spontaneous pattern formation due to the presence of strong competing interactions on different length scales and the pattern formation as a response to an external modulating potential when the system is close to its Lifshitz point. We compare different Monte Carlo techniques showing that the parallel tempering technique represents a promising approach for the study of such systems and we present detailed results for the specific heat and the structural properties. We also present random phase approximation predictions concerning spontaneous pattern formation (or microphase separation), as well as linear response theory predictions concerning the induced pattern formation due to the presence of an external modulating field. In particular we observe that the response of our systems to external fields is much stronger than the response of a Lennard-Jones fluid

  17. Longitudinal Relations between Personality Traits and Aspects of Identity Formation during Adolescence

    Science.gov (United States)

    Hill, Patrick L.; Allemand, Mathias; Grob, Sabine Zehnder; Peng, Aristide; Morgenthaler, Christoph; Kappler, Christoph

    2013-01-01

    The current study focused on three aspects of identity development relevant to the adolescent years: being an authentic person, perceiving control over and consistency in one's environment, and having consistent expectations from close others. In a two-wave study of adolescents (n = 750), we examined how these aspects change over the course of a…

  18. Pattern formation in the iodate-sulfite-thiosulfate reaction-diffusion system.

    Science.gov (United States)

    Liu, Haimiao; Pojman, John A; Zhao, Yuemin; Pan, Changwei; Zheng, Juhua; Yuan, Ling; Horváth, Attila K; Gao, Qingyu

    2012-01-01

    Sodium polyacrylate-induced pH pattern formation and starch-induced iodine pattern formation were investigated in the iodate-sulfite-thiosulfate (IST) reaction in a one-side fed disc gel reactor (OSFR). As binding agents of the autocatalyst of hydrogen ions or iodide ions, different content of sodium polyacrylate or starch has induced various types of pattern formation. We observed pH pulses, striped patterns, mixed spots and stripes, and hexagonal spots upon increasing the content of sodium polyacrylate and observed iodine pulses, branched patterns, and labyrinthine patterns upon increasing the starch content in the system. Coexistence of a pH front and an iodine front was also studied in a batch IST reaction-diffusion system. Both pH and iodine front instabilities were observed in the presence of sodium polyacrylate, i.e., cellular fronts and transient Turing structures resulting from the decrease in diffusion coefficients of activators. The mechanism of multiple feedback may explain the different patterns in the IST reaction-diffusion system. PMID:22068976

  19. Pattern formation in directional solidification under shear flow. I. Linear stability analysis and basic patterns

    International Nuclear Information System (INIS)

    An asymptotic interface equation for directional solidification near the absolute stabiliy limit is extended by a nonlocal term describing a shear flow parallel to the interface. In the long-wave limit considered, the flow acts destabilizing on a planar interface. Moreover, linear stability analysis suggests that the morphology diagram is modified by the flow near onset of the Mullins-Sekerka instability. Via numerical analysis, the bifurcation structure of the system is shown to change. Besides the known hexagonal cells, structures consisting of stripes arise. Due to its symmetry-breaking properties, the flow term induces a lateral drift of the whole pattern, once the instability has become active. The drift velocity is measured numerically and described analytically in the framework of a linear analysis. At large flow strength, the linear description breaks down, which is accompanied by a transition to flow-dominated morphologies which is described in the following paper. Small and intermediate flows lead to increased order in the lattice structure of the pattern, facilitating the elimination of defects. Locally oscillating structures appear closer to the instability threshold with flow than without

  20. Mechanisms of pattern formation in grazing-incidence ion bombardment of Pt(111)

    International Nuclear Information System (INIS)

    Ripple patterns forming on Pt(111) due to 5 keV Ar+ grazing-incidence ion bombardment were investigated by scanning tunneling microscopy in a broad temperature range from 100 to 720 K and for ion fluences up to 3x1020 ions/m2. A detailed morphological analysis together with molecular dynamics simulations of single ion impacts allow us to develop atomic scale models for the formation of these patterns. The large difference in step edge versus terrace damage is shown to be crucial for ripple formation under grazing incidence. The importance of distinct diffusion processes--step adatom generation at kinks and adatom lattice gas formation--for temperature dependent transitions in the surface morphology is highlighted. Surprisingly, ion bombardment effects like thermal spike induced adatom production and planar subsurface channeling are important for pattern ordering

  1. Bifurcation and spatial pattern formation in spreading of disease with incubation period in a phytoplankton dynamics

    Directory of Open Access Journals (Sweden)

    Randhir Singh Baghel

    2012-02-01

    Full Text Available In this article, we propose a three dimensional mathematical model of phytoplankton dynamics with the help of reaction-diffusion equations that studies the bifurcation and pattern formation mechanism. We provide an analytical explanation for understanding phytoplankton dynamics with three population classes: susceptible, incubated, and infected. This model has a Holling type II response function for the population transformation from susceptible to incubated class in an aquatic ecosystem. Our main goal is to provide a qualitative analysis of Hopf bifurcation mechanisms, taking death rate of infected phytoplankton as bifurcation parameter, and to study further spatial patterns formation due to spatial diffusion. Here analytical findings are supported by the results of numerical experiments. It is observed that the coexistence of all classes of population depends on the rate of diffusion. Also we obtained the time evaluation pattern formation of the spatial system.

  2. Pattern Formation in a Cross-Diffusive Holling-Tanner Model

    Directory of Open Access Journals (Sweden)

    Weiming Wang

    2012-01-01

    Full Text Available We present a theoretical analysis of the processes of pattern formation that involves organisms distribution and their interaction of spatially distributed population with self- as well as cross-diffusion in a Holling-Tanner predator-prey model; the sufficient conditions for the Turing instability with zero-flux boundary conditions are obtained; Hopf and Turing bifurcation in a spatial domain is presented, too. Furthermore, we present novel numerical evidence of time evolution of patterns controlled by self- as well as cross-diffusion in the model, and find that the model dynamics exhibits a cross-diffusion controlled formation growth not only to spots, but also to strips, holes, and stripes-spots replication. And the methods and results in the present paper may be useful for the research of the pattern formation in the cross-diffusive model.

  3. Aspects on the gas generation and migration in repositories for high level waste in salt formations

    International Nuclear Information System (INIS)

    In a deep geological repository for high-level waste, gases may be produced during the post-closure phase by several processes. The generated gases can potentially affect safety relevant features and processes of the repository, like the barrier integrity, the transport of liquids and gases in the repository and the release of gaseous radionuclides from the repository into the biosphere. German long-term safety assessments for repositories for high-level waste in salt which were performed prior 2010 did not explicitly consider gas transport and the consequences from release of volatile radionuclides. Selected aspects of the generation and migration of gases in repositories for high-level waste in a salt formation are studied in this report from the viewpoint of the performance assessment. The knowledge on the availability of water in the repository, in particular the migration of salt rock internal fluids in the temperature field of the radioactive waste repository towards the emplacement drifts, was compiled and the amount of water was roughly estimated. Two other processes studied in this report are on the one hand the release of gaseous radionuclides from the repository and their potential impact in the biosphere and on the other hand the transport of gases along the drifts and shafts of the repository and their interaction with the fluid flow. The results presented show that there is some gas production expected to occur in the repository due to corrosion of container material from water disposed of with the backfill and inflowing from the host rock during the thermal phase. If not dedicated gas storage areas are foreseen in the repository concept, these gases might exceed the storage capacity for gases in the repository. Consequently, an outflow of gases from the repository could occur. If there are failed containers for spent fuel, radioactive gases might be released from the containers into the gas space of the backfill and subsequently transported together

  4. Performance analysis and optimal design for well patterns in anisotropic formations

    Institute of Scientific and Technical Information of China (English)

    Liu Yuetian

    2008-01-01

    The mechanism of the effects of anisotropic permeability on well patterns and reservoir development are investigated by coordinate transformation,fluid flow analysis,and reservoir development concepts.Anisotropy of permeability has reconstructive effects on well patterns.The originally designed flooding units are broken up,and new pattern units are made up of the wells that belong to different original units.The behavior possesses strong randomness,and leads to a complicated relationship among the injection and production wells,and unpredictable productivity of the formations.To prevent the break-up of well patterns,well lines should be either parallel or perpendicular to the maximum principal direction of the anisotropic permeability(i.e.the fracture direction).To optimize the development effects of anisotropic formations,the latitudinal and longitudinal well spacing of the well network are calculated from the principal values of the anisotropic permeability.

  5. Induction of secondary axis in hydra revisited: New insights into pattern formation

    Science.gov (United States)

    Kadu, Vishal; S. Ghaskadbi, Saroj; Ghaskadbi, Surendra

    2012-01-01

    In 1909, several years before the famous `Organizer’ experiments of Spemann and Mangold, Ethel Browne demonstrated induction of a secondary axis in hydra by grafting a hypostome. Based on this and subsequent work, in the late sixties, Lewis Wolpert proposed the theory of morphogen gradients and positional information. We have studied secondary axis induction by hypostome and foot tissue using three species of hydra as well as transgenic, GFP-expressing lines of hydra. We have found that pieces of hypostome and complete foot of a donor hydra can induce a secondary axis all along (in upper, middle or lower parts of) the body column of a host hydra, both within and across species with comparable rates. Thus, contrary to the available literature, our results show that the host hypostome does not completely inhibit the induction of a secondary axis. The length of the induced axis though is determined by the position of the graft. By using GFP-expressing lines of hydra we have demonstrated that host ectodermal and endodermal cells actively contribute to the secondary axis. On comparison, the hypostome was found to be a stronger and dominant Organizer than the foot. Foot grafting experiments show a transient increase in the host length as well as the distance between the two Organizers. The length becomes normal once the grafted foot reaches the budding zone. Our work brings out several new aspects of the role of positional cues in pattern formation in hydra that can be now be explored at cellular and molecular levels. PMID:24551754

  6. Pattern Formation in a Vibrated Granular Layer on an Inclined Base

    Institute of Scientific and Technical Information of China (English)

    SHI Xiao-Dong; MIAO Guo-Qing

    2008-01-01

    We carry out the simulations of pattern formation in a two-dimensional vibrated granular layer on an inclined base by molecular dynamics.It is found that the maximum amplitude of the pattern is greater at the lower part than at the higher part of the base,and is proportional to the thickness of the layer.Meanwhile,the wavelength varies non-monotonically as the inclined angle of the base is increased.

  7. Pattern Formation in a Vibrated Granular Layer on an Inclined Base

    International Nuclear Information System (INIS)

    We carry out the simulations of pattern formation in a two-dimensional vibrated granular layer on an inclined base by molecular dynamics. It is found that the maximum amplitude of the pattern is greater at the lower part than at the higher part of the base, and is proportional to the thickness of the layer. Meanwhile, the wavelength varies non-monotonically as the inclined angle of the base is increased. (fundamental areas of phenomenology (including applications))

  8. Topological analysis of the formation of Jet-Wake flow pattern in centrifugal impeller channel

    Institute of Scientific and Technical Information of China (English)

    ZHENG Qun; LIU Shun-long

    2004-01-01

    Topological analyses are carried out for the numerical results of internal flow field in centrifugal impeller. Topological rules of the singular point characteristics of the limiting streamline are derived and used to determine three dimensional separation patterns in centrifugal impeller and to verify the numerical results. The results reveal that the wake is saddle to nodal closed separation and the formation, its onset point and its developing process of Jet-Wake Flow pattern in centrifugal impeller are presented in this paper.

  9. Polydisperse Adsorption: Pattern Formation Kinetics, Fractal Properties, and Transition to Order

    OpenAIRE

    Brilliantov, N. V.; Andrienko, Yu. A.; Krapivsky, P. L.; Kurths, J.

    1998-01-01

    We investigate the process of random sequential adsorption of polydisperse particles whose size distribution exhibits a power-law dependence in the small size limit, $P(R)\\sim R^{\\alpha-1}$. We reveal a relation between pattern formation kinetics and structural properties of arising patterns. We propose a mean-field theory which provides a fair description for sufficiently small $\\alpha$. When $\\alpha \\to \\infty$, highly ordered structures locally identical to the Apollonian packing are forme...

  10. Role of Convection Flow on the Pattern Formation in the Drying Process of Colloidal Suspension

    International Nuclear Information System (INIS)

    We study the macroscopic drying patterns of aqueous suspensions of colloidal silica spheres. It was found that convection strength can influence pattern formation. Uniformed films are obtained at weaker convection strength. In addition, we make clear that it is not reasonable to discuss individually the effect of temperature and humidity on the colloid self-assembly. The physical mechanism is that these factors have relationship with the evaporation rate, which can affect the convection strength

  11. Self-Assembly, Pattern Formation and Growth Phenomena in Nano-Systems

    Science.gov (United States)

    Golovin, Alexander A.; Nepomnyashchy, Alexander A.

    Nano-science and nano-technology are rapidly developing scientific and technological areas that deal with physical, chemical and biological processes that occur on nano-meter scale -- one millionth of a millimeter. Self-organization and pattern formation play crucial role on nano-scales and promise new, effective routes to control various nano-scales processes. This book contains lecture notes written by the lecturers of the NATO Advanced Study Institute "Self-Assembly, Pattern Formation and Growth Phenomena in Nano-Systems" that took place in St Etienne de Tinee, France, in the fall 2004.

  12. Discrete model of periodic pattern formation through a combined autocrine–juxtacrine cell signaling

    International Nuclear Information System (INIS)

    We model the formation of periodic patterns of gene expression in epithelial cell sheets driven by autocrine signaling coupled to juxtacrine lateral inhibition. The mathematical model is based on a continuous description of the extracellular matrix and a discrete cell-level description of the layer of cells, coupling the dynamics of diffusible ligands to the threshold-controlled cell-autonomous regulation with randomly fluctuating production rates. The results of numerical simulations indicate that propagating signaling waves emerge in a certain parametric domain, leading to the formation of a variety of either periodic or irregular patterns. For some selections of parameters, a propagating stripe of uniform expression leaves in its wake stationary periodic arrays. Coupling of autocrine and juxtacrine cell communication is essential for the pattern regularity and for the selection of expression patterns. Moreover, weak but non-vanishing noise levels are essential for the formation of regular patterns. Additional autocrine and cell-autonomous regulatory interactions can be introduced to increase the spacing of a periodic pattern. (paper)

  13. Formative e-Assessment: case stories, design patterns and future scenarios

    OpenAIRE

    Mor, Yishay; Mellar, Harvey; Pachler, Norbert; Daly, Caroline

    2010-01-01

    This chapter presents findings from the JISC funded project ‘Scoping a vision for formative e-assessment’ (FEASST). The project was motivated by the increasing recognition of the importance of formative assessment and the need to identify effective strategies for incorporating it into e-learning. This chapter is particularly interested in the human-centric, social dimensions of e-assessment. The project used the participatory pattern methodology to engage a group of practitioners in developin...

  14. Women in Politics: Some Historical and Cultural Aspects of Voting Patterns and Possible Influences on Education.

    Science.gov (United States)

    Smith, Peggy A.; Smith, Alan D.

    The early and formative years of women's involvement in the political structure of the United States was filled with high hopes, especially issues related to women and children. Educational reform was one of the major goals that women hoped to achieve. As demonstrated by an in-depth look at the 1920 National Convention of the Republican Party,…

  15. Pattern Formation in a Predator-Prey Model with Both Cross Diffusion and Time Delay

    Directory of Open Access Journals (Sweden)

    Boli Xie

    2014-01-01

    Full Text Available A predator-prey model with both cross diffusion and time delay is considered. We give the conditions for emerging Turing instability in detail. Furthermore, we illustrate the spatial patterns via numerical simulations, which show that the model dynamics exhibits a delay and diffusion controlled formation growth not only of spots and stripe-like patterns, but also of the two coexist. The obtained results show that this system has rich dynamics; these patterns show that it is useful for the diffusive predation model with a delay effect to reveal the spatial dynamics in the real model.

  16. Evaluating the formation mechanisms of the equatorial Pacific SST warming pattern in CMIP5 models

    Science.gov (United States)

    Ying, Jun; Huang, Ping; Huang, Ronghui

    2016-04-01

    Based on the historical and RCP8.5 runs of the multi-model ensemble of 32 models participating in CMIP5, the present study evaluates the formation mechanisms for the patterns of changes in equatorial Pacific SST under global warming. Two features with complex formation processes, the zonal El Ni˜no-like pattern and the meridional equatorial peak warming (EPW), are investigated. The climatological evaporation is the main contributor to the El Ni˜no-like pattern, while the ocean dynamical thermostat effect plays a comparable negative role. The cloud-shortwave-radiation-SST feedback and the weakened Walker circulation play a small positive role in the El Ni˜no-like pattern. The processes associated with ocean dynamics are confined to the equator. The climatological evaporation is also the dominant contributor to the EPW pattern, as suggested in previous studies. However, the effects of some processes are inconsistent with previous studies. For example, changes in the zonal heat advection due to the weakened Walker circulation have a remarkable positive contribution to the EPW pattern, and changes in the shortwave radiation play a negative role in the EPW pattern.

  17. Finite-span rotating wings: three-dimensional vortex formation and variations with aspect ratio

    Science.gov (United States)

    Carr, Z. R.; Chen, C.; Ringuette, M. J.

    2013-02-01

    We investigate experimentally the effect of aspect ratio ( [InlineMediaObject not available: see fulltext.] ) on the time-varying, three-dimensional flow structure of flat-plate wings rotating from rest at 45° angle of attack. Plates of [InlineMediaObject not available: see fulltext.] = 2 and 4 are tested in a 50 % by mass glycerin-water mixture, with a total rotation of ϕ = 120° and a matched tip Reynolds number of 5,000. The time-varying, three-component volumetric velocity field is reconstructed using phase-locked, phase-averaged stereoscopic digital particle image velocimetry in multiple, closely-spaced chordwise planes. The vortex structure is analyzed using the {Q}-criterion, helicity density, and spanwise quantities. For both [InlineMediaObject not available: see fulltext.] s, the flow initially consists of a connected and coherent leading-edge vortex (LEV), tip vortex (TV), and trailing-edge vortex (TEV) loop; the LEV increases in size with span and tilts aft. Smaller, discrete vortices are present in the separated shear layers at the trailing and tip edges, which wrap around the primary TEV and TV. After about ϕ = 20°, the outboard-span LEV lifts off the plate and becomes arch-like. A second, smaller LEV and the formation of corner vortex structures follow. For [InlineMediaObject not available: see fulltext.] = 4, the outboard LEV moves farther aft, multiple LEVs form ahead of it, and after about ϕ = 50° a breakdown of the lifted-off LEV and the TV occurs. However, for [InlineMediaObject not available: see fulltext.] = 2, the outboard LEV lift-off is not progressive, and the overall LEV-TV flow remains more coherent and closer to the plate, with evidence of breakdown late in the motion. Inboard of about 50 % span, the [InlineMediaObject not available: see fulltext.] = 4 LEV is stable for the motion duration. Up to approximately 60 % span, the [InlineMediaObject not available: see fulltext.] = 2 LEV is distinct from the TV and is similarly stable

  18. Pattern formation on networks with reactions: A continuous-time random-walk approach

    Science.gov (United States)

    Angstmann, C. N.; Donnelly, I. C.; Henry, B. I.

    2013-03-01

    We derive the generalized master equation for reaction-diffusion on networks from an underlying stochastic process, the continuous time random walk (CTRW). The nontrivial incorporation of the reaction process into the CTRW is achieved by splitting the derivation into two stages. The reactions are treated as birth-death processes and the first stage of the derivation is at the single particle level, taking into account the death process, while the second stage considers an ensemble of these particles including the birth process. Using this model we have investigated different types of pattern formation across the vertices on a range of networks. Importantly, the CTRW defines the Laplacian operator on the network in a non-ad hoc manner and the pattern formation depends on the structure of this Laplacian. Here we focus attention on CTRWs with exponential waiting times for two cases: one in which the rate parameter is constant for all vertices and the other where the rate parameter is proportional to the vertex degree. This results in nonsymmetric and symmetric CTRW Laplacians, respectively. In the case of symmetric Laplacians, pattern formation follows from the Turing instability. However in nonsymmetric Laplacians, pattern formation may be possible with or without a Turing instability.

  19. Transverse Mode Structure and Pattern Formation in Oxide Confined Vertical Cavity Semiconductor Lasers

    Energy Technology Data Exchange (ETDEWEB)

    Choquette, K.D.; Geib, K.M.; Hegarty, S.P.; Hou, H.Q.; Huyet, G.; McInerney, J.G.; Porta, P.

    1999-07-06

    We analyze the transverse profiles of oxide-confined vertical cavity laser diodes as a function of aperture size. For small apertures we demonstrate that thermal lensing can be the dominant effect in determining the transverse resonator properties. We also analyze pattern formation in lasers with large apertures where we observe the appearance of tilted waves.

  20. Asymptotic Analysis in a Gas-Solid Combustion Model with Pattern Formation

    Institute of Scientific and Technical Information of China (English)

    Claude-Michel BRAUNER; Lina HU; Luca LORENZI

    2013-01-01

    The authors consider a free interface problem which stems from a gas-solid model in combustion with pattern formation.A third-order,fully nonlinear,self-consistent equation for the flame front is derived.Asymptotic methods reveal that the interface approaches a solution to the Kuramoto-Sivashinsky equation.Numerical results which illustrate the dynamics are presented.

  1. Collective motion of cells mediates segregation and pattern formation in co-cultures.

    Directory of Open Access Journals (Sweden)

    Elod Méhes

    Full Text Available Pattern formation by segregation of cell types is an important process during embryonic development. We show that an experimentally yet unexplored mechanism based on collective motility of segregating cells enhances the effects of known pattern formation mechanisms such as differential adhesion, mechanochemical interactions or cell migration directed by morphogens. To study in vitro cell segregation we use time-lapse videomicroscopy and quantitative analysis of the main features of the motion of individual cells or groups. Our observations have been extensive, typically involving the investigation of the development of patterns containing up to 200,000 cells. By either comparing keratocyte types with different collective motility characteristics or increasing cells' directional persistence by the inhibition of Rac1 GTP-ase we demonstrate that enhanced collective cell motility results in faster cell segregation leading to the formation of more extensive patterns. The growth of the characteristic scale of patterns generally follows an algebraic scaling law with exponent values up to 0.74 in the presence of collective motion, compared to significantly smaller exponents in case of diffusive motion.

  2. Features of the formation of the bodily aspect of gender identity in men

    OpenAIRE

    Harlanova M.M.; Dvoryanchikov N.V.

    2015-01-01

    The article examines the peculiarities of the bodily aspect of gender identity in men. The urgency of this work due to the fact that currently in Russia to study the influence of the bodily aspect to the whole structure of gender identity is given little attention. At the present time the problem of studying the physicality involved in domestic psychologists: Arina G. A., V. V. Nikolaev, A. S. Kostov, A. N. Borojevic, B. T. Sokolov, V. Yu., Baskakov, who agree in opinion on the necessity to s...

  3. The effect of the signalling scheme on the robustness of pattern formation in development

    KAUST Repository

    Kang, H.-W.

    2012-03-21

    Pattern formation in development is a complex process which involves spatially distributed signals called morphogens that influence gene expression and thus the phenotypic identity of cells. Usually different cell types are spatially segregated, and the boundary between them may be determined by a threshold value of some state variable. The question arises as to how sensitive the location of such a boundary is to variations in properties, such as parameter values, that characterize the system. Here, we analyse both deterministic and stochastic reaction-diffusion models of pattern formation with a view towards understanding how the signalling scheme used for patterning affects the variability of boundary determination between cell types in a developing tissue.

  4. SIMULATION OF ELECTRICAL FIELD FOR THE FORMATION MECHANISM OF BIRD'S NEST PATTERNED STRUCTURES BY ELECTROSPINNING

    Institute of Scientific and Technical Information of China (English)

    Xiang-yu Ye; Yi-ning Jin; Xiao-jun Huang; Lei Luo; Zhi-kang Xu

    2013-01-01

    In our previous work,it was found that large Bird's Nest patterned nanofibrous membranes can be simply electrospun from chlorinated polypropylene solution doped with an ionic liquid,and a plausible formation mechanism of Bird's Nest patterned architectures was proposed.Here,we use Ansoft Maxwell version 12 software (3D,electrostatic solver) to simulate the electrical field distribution of the electrospirming setup,and to clarify the rationality of proposed formation mechanism.Calculation results clearly show that the introduction of charged nanofibrous bundles would produce a similar patterned electrical field distribution,which definitely confirms the important role of surface residual charges.The proposed mechanism can be well extended to other polymer systems including polystyrene,poly(acrylonitrile-co-acrylic acid) and chitosan/poly(ethvlene oxide).

  5. Block Co-Polymers for Nanolithography: Rapid Microwave Annealing for Pattern Formation on Substrates

    Directory of Open Access Journals (Sweden)

    Dipu Borah

    2015-03-01

    Full Text Available The integration of block copolymer (BCP self-assembled nanopattern formation as an alternative lithographic tool for nanoelectronic device fabrication faces a number of challenges such as defect densities, feature size, pattern transfer, etc. Key barriers are the nanopattern process times and pattern formation on current substrate stack layers such as hard masks (e.g., silicon nitride, Si3N4. We report a rapid microwave assisted solvothermal (in toluene environments self-assembly and directed self-assembly of a polystyrene-block-polydimethylsiloxane (PS-b-PDMS BCP thin films on planar and topographically patterned Si3N4 substrates. Hexagonally arranged, cylindrical structures were obtained and good pattern ordering was achieved. Factors affecting BCP self-assembly, notably anneal time and temperature, were studied and seen to have significant effects. Graphoepitaxy within the topographical structures provided long range, translational alignment of the patterns. The effect of surface topography feature size and spacing was investigated. The solvothermal microwave based technique used to provide periodic order in the BCP patterns showed significant promise and ordering was achieved in much shorter periods than more conventional thermal and solvent annealing methods. The implications of the work in terms of manufacturing technologies are discussed.

  6. Nanostructured diffusion-limited-aggregation crystal pattern formation in a reactive microemulsion system

    International Nuclear Information System (INIS)

    Nanostructured diffusion-limited-aggregation (DLA) crystal pattern formation in microemulsion consisting of water, styrene, cetyltrimethylammonium chloride (CTACl), potassium persulphate and an oscillating Belousov–Zhabotinsky (BZ) reactant is reported. A variety of spatiotemporal patterns like concentric wave, spatial (stripe) and chaotic patterns appear. A colloidal phase composed of numerous nano-sized particles has been observed. The solid phase nucleation has been found to occur in the colloidal phase and has been found to grow in a symmetric crystal pattern with the progress of the reaction finally exhibiting DLA structures. We show that the formation of a nanostructured DLA crystal pattern is governed by spatial structures emerging in the BZ microemulsion system. Without any spatial structure in the microemulsion system only hydrogel of high viscosity is formed. A nano-sized branched crystal pattern was formed with a particle diameter in the range of 60–100 nm, as evident by transmission electron microscope, powder x-ray diffraction and particle size analyser studies. (paper)

  7. Interlinked nonlinear subnetworks underlie the formation of robust cellular patterns in Arabidopsis epidermis: a dynamic spatial model

    Directory of Open Access Journals (Sweden)

    Padilla-Longoria Pablo

    2008-11-01

    Full Text Available Abstract Background Dynamical models are instrumental for exploring the way information required to generate robust developmental patterns arises from complex interactions among genetic and non-genetic factors. We address this fundamental issue of developmental biology studying the leaf and root epidermis of Arabidopsis. We propose an experimentally-grounded model of gene regulatory networks (GRNs that are coupled by protein diffusion and comprise a meta-GRN implemented on cellularised domains. Results Steady states of the meta-GRN model correspond to gene expression profiles typical of hair and non-hair epidermal cells. The simulations also render spatial patterns that match the cellular arrangements observed in root and leaf epidermis. As in actual plants, such patterns are robust in the face of diverse perturbations. We validated the model by checking that it also reproduced the patterns of reported mutants. The meta-GRN model shows that interlinked sub-networks contribute redundantly to the formation of robust hair patterns and permits to advance novel and testable predictions regarding the effect of cell shape, signalling pathways and additional gene interactions affecting spatial cell-patterning. Conclusion The spatial meta-GRN model integrates available experimental data and contributes to further understanding of the Arabidopsis epidermal system. It also provides a systems biology framework to explore the interplay among sub-networks of a GRN, cell-to-cell communication, cell shape and domain traits, which could help understanding of general aspects of patterning processes. For instance, our model suggests that the information needed for cell fate determination emerges from dynamic processes that depend upon molecular components inside and outside differentiating cells, suggesting that the classical distinction of lineage versus positional cell differentiation may be instrumental but rather artificial. It also suggests that interlinkage

  8. Techniques for analysing pattern formation in populations of stem cells and their progeny

    Directory of Open Access Journals (Sweden)

    Fozard John A

    2011-10-01

    Full Text Available Abstract Background To investigate how patterns of cell differentiation are related to underlying intra- and inter-cellular signalling pathways, we use a stochastic individual-based model to simulate pattern formation when stem cells and their progeny are cultured as a monolayer. We assume that the fate of an individual cell is regulated by the signals it receives from neighbouring cells via either diffusive or juxtacrine signalling. We analyse simulated patterns using two different spatial statistical measures that are suited to planar multicellular systems: pair correlation functions (PCFs and quadrat histograms (QHs. Results With a diffusive signalling mechanism, pattern size (revealed by PCFs is determined by both morphogen decay rate and a sensitivity parameter that determines the degree to which morphogen biases differentiation; high sensitivity and slow decay give rise to large-scale patterns. In contrast, with juxtacrine signalling, high sensitivity produces well-defined patterns over shorter lengthscales. QHs are simpler to compute than PCFs and allow us to distinguish between random differentiation at low sensitivities and patterned states generated at higher sensitivities. Conclusions PCFs and QHs together provide an effective means of characterising emergent patterns of differentiation in planar multicellular aggregates.

  9. USERS' PERCEPTION OF KOWLOON PARK, HONG KONG:VISITING PATTERNS AND SCENIC ASPECTS

    Institute of Scientific and Technical Information of China (English)

    WONG Koon-kwai; Manfred DOMROES

    2004-01-01

    Hong Kong is a hyper-dense city with 7×106 people living in an area of 1100km2.One way to improve the livability of compacted and congested cities like Hong Kong is through the provision of urban parks,an aspect that has largely been under-researched.This study focuses on how users perceive and utilize various facilities in the Kowloon Park.The findings revealed that the Kowloon Park is one of the most preferred parks in Hong Kong for both local residents and tourists.Users were quite satisfied with the park's facilities.Notably,the most important component of an urban park is its greenery.This is followed by water elements,seating places,and facilities for various recreational activities.The improvements users would like to see in urban parks include good design and management,meeting users' needs,overcoming barriers to use,and providing a high quality and varied experience for different groups in the community.The findings of this study provide a good basis to address park management issues from the users' perspective.In particular,parks should provide easy access,encourage optimum usage and enable complimentary improvements to the environment.

  10. PRACTICAL ASPECTS OF THE FORMATION OF YOUTH CIVIL POSITION IN THE PEDAGOGICAL PROCESS

    OpenAIRE

    Jurs, Pāvels; Samuseviča, Alīda

    2016-01-01

    Emphasizing the social value of the democratic state and civic society, the authors of the publication have updated the theoretical nuances of attitudes towards citizenship of young people as well as the formation of civic position and empirical findings in the field of civic engagement and promotion opportunities. The objective of publication is: basing on the theoretical understanding of the dimensions of the citizenship formation, to characterize the manifestations of civic attitudes of 9t...

  11. Chemical and rheological aspects of gel formation in the California Mastitis Test.

    Science.gov (United States)

    Whyte, David; Walmsley, Michael; Liew, Alvin; Claycomb, Rod; Mein, Graeme

    2005-02-01

    The rheological properties of the CMT gel were analysed. Data are presented to demonstrate that the gel is a non-homogenous, visco-elastic, non-Newtonian fluid with rheopectic, and rheodestructive behaviour. The fundamental chemistry of the CMT is reviewed and a modified theory of gel formation is presented. The implications of the rheological properties and modified theory of gel formation for an automatic sensor are discussed. PMID:15747739

  12. Formation mechanism of ordered stress-relief patterns in a free sustained Cu film system

    International Nuclear Information System (INIS)

    A nearly free sustained copper (Cu) film system has been successfully fabricated by thermal evaporation deposition of Cu atoms on silicone oil surfaces, and a characteristic ordered pattern has been systematically studied. The ordered pattern, namely, band, is composed of a large number of parallel key-formed domains with different width w but nearly uniform length L; its characteristic values of w and L are very susceptible to the growth period, deposition rate and nominal film thickness. The formation mechanism of the ordered patterns is well explained in terms of the relaxation of the internal stress in the films, which is related to the nearly zero adhesion of the solid-liquid interface. By using a two-time deposition method, it is confirmed that the ordered patterns really form in the vacuum chamber

  13. Formation mechanism of ordered stress-relief patterns in a free sustained Cu film system

    Institute of Scientific and Technical Information of China (English)

    Chen Miao-Gen; Xie Jian-Ping; Jin Jin-Sheng; Xia A-Gen; Ye Gao-Xiang

    2008-01-01

    A nearly free sustained copper (Cu) film system has been successfully fabricated by thermal evaporation deposition of Cu atoms on silicone oil surfaces,and a characteristic ordered pattern has been systematically studied.The ordered pattern,namely,band,is composed of a large number of parallel key-formed domains with different width w but nearly uniform length L;its characteristic values of ω and L are very susceptible to the growth period,deposition rate and nominal film thickness.The formation mechanism of the ordered patterns is well explained in terms of the relaxation of the internal stress in the films,which is related to the nearly zero adhesion of the solid-liquid interface.By using a two-time deposition method,it is confirmed that the ordered patterns really form in the vacuum chamber.

  14. THEORETICAL-METHODOLOGICAL ASPECTS OF BACKGROUNDS TO EDUCATIONAL ACTIVITY FORMATION OF PRESCHOOL AGED CHILDREN

    Directory of Open Access Journals (Sweden)

    Nadejda V. Babinova

    2015-06-01

    Full Text Available The purpose of the paper is selection and justification background components to teaching activity and indicators of its formedness among preschool children.Results. The alternatives of using project activity for forming backgrounds for learning activities of high preschool aged children are shown as a form of learning process organization. The concepts «learning activity» and «general learning activities» are considered. The conditions of project activity realization in preschool education organizations are determined.Scientific novelty. The concept «backgrounds for learning activities» is defined; it is proposed to consider it as necessary certain qualities for the emergence of personal, regulatory, cognitive and communicative aspects of learning activities that reflect different aspects of training activity.Practical significance. The research implementations can be used in the teacher’s practice at pre-school education, and in the family education.

  15. Formation and all-optical control of optical patterns in semiconductor microcavities

    Science.gov (United States)

    Binder, R.; Tsang, C. Y.; Tse, Y. C.; Luk, M. H.; Kwong, N. H.; Chan, Chris K. P.; Leung, P. T.; Lewandowski, P.; Schumacher, Stefan; Lafont, O.; Baudin, E.; Tignon, J.

    2016-05-01

    Semiconductor microcavities offer a unique way to combine transient all-optical manipulation of GaAs quantum wells with the benefits of structural advantages of microcavities. In these systems, exciton-polaritons have dispersion relations with very small effective masses. This has enabled prominent effects, for example polaritonic Bose condensation, but it can also be exploited for the design of all-optical communication devices. The latter involves non-equilibrium phase transitions in the spatial arrangement of exciton-polaritons. We consider the case of optical pumping with normal incidence, yielding a spatially homogeneous distribution of exciton-polaritons in optical cavities containing the quantum wells. Exciton-exciton interactions can trigger instabilities if certain threshold behavior requirements are met. Such instabilities can lead, for example, to the spontaneous formation of hexagonal polariton lattices (corresponding to six-spot patterns in the far field), or to rolls (corresponding to two-spot far field patterns). The competition among these patterns can be controlled to a certain degree by applying control beams. In this paper, we summarize the theory of pattern formation and election in microcavities and illustrate the switching between patterns via simulation results.

  16. The remodeling pattern of human mandibular alveolar bone during prenatal formation from 19 to 270mm CRL.

    Science.gov (United States)

    Radlanski, Ralf J; Renz, Herbert; Tsengelsaikhan, Nyamdorj; Schuster, Felix; Zimmermann, Camilla A

    2016-05-01

    The underlying mechanisms of human bone morphogenesis leading to a topologically specific shape remain unknown, despite increasing knowledge of the basic molecular aspects of bone formation and its regulation. The formation of the alveolar bone, which houses the dental primordia, and later the dental roots, may serve as a model to approach general questions of bone formation. Twenty-five heads of human embryos and fetuses (Radlanski-Collection, Berlin) ranging from 19mm to 270mm (crown-rump-length) CRL were prepared as histological serial sections. For each stage, virtual 3D-reconstructions were made in order to study the morphogenesis of the mandibular molar primordia with their surrounding bone. Special focus was given to recording the bone-remodeling pattern, as diagnosed from the histological sections. In early stages (19-31mm CRL) developing bone was characterized by appositional only. At 41, in the canine region, mm CRL bony extensions were found forming on the bottom of the trough. Besides general apposition, regions with resting surfaces were also found. At a fetal size of 53mm CRL, septa have developed and led to a compartment for canine development. Furthermore, one shared compartment for the incisor primordia and another shared compartment for the molars also developed. Moreover, the inner surfaces of the dental crypts showed resorption of bone. From this stage on, a general pattern became established such that the compartmentalizing ridges and septa between all of the dental primordia and the brims of the crypts were noted, and were due to appositional growth of bone, while the crypts enlarged on their inner surfaces by resorption. By 160mm CRL, the dental primordia were larger, and all of the bony septa had become reduced in size. The primordia for the permanent teeth became visible at 225mm CRL and shared the crypts of their corresponding deciduous primordia. PMID:26921449

  17. Spike Train Dynamics Underlying Pattern Formation in Integrate-and-Fire Oscillator Networks

    Science.gov (United States)

    Bressloff, P. C.; Coombes, S.

    1998-09-01

    A dynamical mechanism underlying pattern formation in a spatially extended network of integrate-and-fire oscillators with synaptic interactions is identified. It is shown how in the strong coupling regime the network undergoes a discrete Turing-Hopf bifurcation of the firing times from a synchronous state to a state with periodic or quasiperiodic variations of the interspike intervals on closed orbits. The separation of these orbits in phase space results in a spatially periodic pattern of mean firing rate across the network that is modulated by deterministic fluctuations of the instantaneous firing rate.

  18. Seasonal and temporal patterns of NDMA formation potentials in surface waters.

    Science.gov (United States)

    Uzun, Habibullah; Kim, Daekyun; Karanfil, Tanju

    2015-02-01

    The seasonal and temporal patterns of N-nitrosodimethylamine (NDMA) formation potentials (FPs) were examined with water samples collected monthly for 21 month period in 12 surface waters. This long term study allowed monitoring the patterns of NDMA FPs under dynamic weather conditions (e.g., rainy and dry periods) covering several seasons. Anthropogenically impacted waters which were determined by high sucralose levels (>100 ng/L) had higher NDMA FPs than limited impacted sources (sucralose yielded poor correlations with NDMA FP (R(2) sucralose] yielded a better correlation with NDMA FP (R(2) = 0.53). PMID:25481075

  19. Rhythmic pattern formations in gels and Matalon–Packter law: A fresh perspective

    Indian Academy of Sciences (India)

    Jacob George; Issac Paul; P A Varughese; George Varghese

    2003-06-01

    The periodic precipitation pattern formation in gelatinous media is interpreted as a moving boundary problem. The time law, spacing law and width law are revisited on the basis of the new scenario. The explicit dependence of the geometric structure on the initial concentrations of the reactants is derived. Matalon–Packter law, which relates the spacing coefficient with the initial concentrations is reformulated removing many ambiguities and impractical parameters. Experimental results are discussed to establish the significance of moving boundary concept in the diffusion controlled pattern forming systems.

  20. Formation of zebra pattern in low-frequency Jovian radio emission

    CERN Document Server

    Kuznetsov, A A

    2012-01-01

    We investigate the formation of zebra-like fine spectral structures (consisting of several parallel bands in the dynamic spectrum) in the Jovian broadband kilometric radiation; such radio bursts were observed by Cassini in 2000/2001. We assume that the emission is generated due to a plasma mechanism in the Io plasma torus. We have shown that the double plasma resonance effect (that was proposed earlier as a formation mechanism of the solar zebra patterns) is able to produce the observed spectral structures. The observed frequency drifts are caused, most likely, by the dynamics of the electron acceleration site. The required conditions in the emission source are discussed.

  1. Patterned Formation of Highly Coherent Nitrogen-Vacancy Centers Using a Focused Electron Irradiation Technique.

    Science.gov (United States)

    McLellan, Claire A; Myers, Bryan A; Kraemer, Stephan; Ohno, Kenichi; Awschalom, David D; Bleszynski Jayich, Ania C

    2016-04-13

    We demonstrate fully three-dimensional and patterned localization of nitrogen-vacancy (NV) centers in diamond with coherence times in excess of 1 ms. Nitrogen δ-doping during chemical vapor deposition diamond growth vertically confines nitrogen to 4 nm while electron irradiation with a transmission electron microscope laterally confines vacancies to less than 450 nm. We characterize the effects of electron energy and dose on NV formation. Importantly, our technique enables the formation of reliably high-quality NV centers inside diamond nanostructures with applications in quantum information and sensing. PMID:27010642

  2. Modeling Elevation and Aspect Controls on Emerging Ecohydrologic Processes and Ecosystem Patterns Using the Component-based Landlab Framework

    Science.gov (United States)

    Nudurupati, S. S.; Istanbulluoglu, E.; Adams, J. M.; Hobley, D. E. J.; Gasparini, N. M.; Tucker, G. E.; Hutton, E. W. H.

    2014-12-01

    Topography plays a commanding role on the organization of ecohydrologic processes and resulting vegetation patterns. In southwestern United States, climate conditions lead to terrain aspect- and elevation-controlled ecosystems, with mesic north-facing and xeric south-facing vegetation types; and changes in biodiversity as a function of elevation from shrublands in low desert elevations, to mixed grass/shrublands in mid elevations, and forests at high elevations and ridge tops. These observed patterns have been attributed to differences in topography-mediated local soil moisture availability, micro-climatology, and life history processes of plants that control chances of plant establishment and survival. While ecohydrologic models represent local vegetation dynamics in sufficient detail up to sub-hourly time scales, plant life history and competition for space and resources has not been adequately represented in models. In this study we develop an ecohydrologic cellular automata model within the Landlab component-based modeling framework. This model couples local vegetation dynamics (biomass production, death) and plant establishment and competition processes for resources and space. This model is used to study the vegetation organization in a semiarid New Mexico catchment where elevation and hillslope aspect play a defining role on plant types. Processes that lead to observed plant types across the landscape are examined by initializing the domain with randomly assigned plant types and systematically changing model parameters that couple plant response with soil moisture dynamics. Climate perturbation experiments are conducted to examine the plant response in space and time. Understanding the inherently transient ecohydrologic systems is critical to improve predictions of climate change impacts on ecosystems.

  3. Quantum properties of transverse pattern formation in second-harmonic generation

    DEFF Research Database (Denmark)

    Bache, Morten; Scotto, P.; Zambrini, R.;

    2002-01-01

    transverse wave number, which are not identified in a linearized analysis, are also described. The intensity differences between opposite points of the far fields are shown to exhibit sub-Poissonian statistics, revealing the quantum nature of the correlations. We observe twin beam correlations in both the......We investigate the spatial quantum noise properties of the one-dimensional transverse pattern formation instability in intracavity second-harmonic generation. The Q representation of a quasi-probability distribution is implemented in terms of nonlinear stochastic Langevin equations. We study these...... pattern formation, beams with opposite direction of the off-axis critical wave numbers are shown to be highly correlated. This is observed for the fundamental field, for the second-harmonic field, and also for the cross-correlation between the two fields. Nonlinear correlations involving the homogeneous...

  4. On the mechanism of pattern formation in glow dielectric barrier discharge

    Energy Technology Data Exchange (ETDEWEB)

    Qiao, Yajun; Li, Ben; Ouyang, Jiting, E-mail: jtouyang@bit.edu.cn [School of Physics, Beijing Institute of Technology, Beijing 100081 (China)

    2016-01-15

    The formation mechanism of pattern in glow dielectric barrier discharge is investigated by two-dimensional fluid modeling. Experimental results are shown for comparison. The simulation results show that the non-uniform distribution of space charges makes the discharge be enhanced in the high-density region but weakened in its neighborhood, which is considered as an activation-inhibition effect. This effect shows through during a current pulse (one discharge event) but also in a certain period of time after discharge that determines a driving frequency range for the non-uniformity of space charges to be enhanced. The effects of applied voltage, surface charge, electrode boundary, and external field are also discussed. All these factors affect the formation of dielectric-barrier-discharge pattern by changing the distribution or the dynamics of space charges and hence the activation-inhibition effect of non-uniform space charges.

  5. Pattern formation and dynamics of plasma filaments in dielectric barrier discharges

    International Nuclear Information System (INIS)

    Dielectric barrier discharges (DBDs) operating in a transient glow discharge regime offer a large variety of self-organized filamentary static or dynamical structures and constitute an excellent physical system for the study of nonlinear dynamics and pattern formation. The plasma filaments of DBDs can exhibit particle-like behavior, with motion, generation, annihilation, and scattering as well as collective effects leading to self-organized structures (hexagons, stripes, concentric rings, spirals, etc) that are typical of reaction–diffusion systems. The purpose of this paper is to analyze the detailed physics of pattern formation in DBDs on the basis of numerical fluid simulations and experiments in order to provide a deeper understanding of the nonlinear mechanisms responsible for the self-organization and dynamics of filaments. (paper)

  6. On the mechanism of pattern formation in glow dielectric barrier discharge

    International Nuclear Information System (INIS)

    The formation mechanism of pattern in glow dielectric barrier discharge is investigated by two-dimensional fluid modeling. Experimental results are shown for comparison. The simulation results show that the non-uniform distribution of space charges makes the discharge be enhanced in the high-density region but weakened in its neighborhood, which is considered as an activation-inhibition effect. This effect shows through during a current pulse (one discharge event) but also in a certain period of time after discharge that determines a driving frequency range for the non-uniformity of space charges to be enhanced. The effects of applied voltage, surface charge, electrode boundary, and external field are also discussed. All these factors affect the formation of dielectric-barrier-discharge pattern by changing the distribution or the dynamics of space charges and hence the activation-inhibition effect of non-uniform space charges

  7. Spatial Heterogeneity and Imperfect Mixing in Chemical Reactions: Visualization of Density-Driven Pattern Formation

    OpenAIRE

    2009-01-01

    Imperfect mixing is a concern in industrial processes, everyday processes (mixing paint, bread machines), and in understanding salt water-fresh water mixing in ecosystems. The effects of imperfect mixing become evident in the unstirred ferroin-catalyzed Belousov-Zhabotinsky reaction, the prototype for chemical pattern formation. Over time, waves of oxidation (high ferriin concentration, blue) propagate into a background of low ferriin concentration (red); their structure reflects in part the ...

  8. Pattern formation during de novo assembly of the Arabidopsis shoot meristem

    OpenAIRE

    Gordon, Sean P.; Heisler, Marcus G.; Reddy, G Venugopala; Ohno, Carolyn; Das, Pradeep; Meyerowitz, Elliot M.

    2007-01-01

    Most multicellular organisms have a capacity to regenerate tissue after wounding. Few, however, have the ability to regenerate an entire new body from adult tissue. Induction of new shoot meristems from cultured root explants is a widely used, but poorly understood, process in which apical plant tissues are regenerated from adult somatic tissue through the de novo formation of shoot meristems. We characterize early patterning during de novo development of the Arabidopsis shoot meristem using ...

  9. Lung adenocarcinoma with giant cyst formation showing a variety of histologic patterns: a case report

    OpenAIRE

    Kondo Takeshi

    2010-01-01

    Abstract Introduction Lung cancer with large cyst formation is relatively rare. This is a case report of a patient with lung cystic adenocarcinoma with multiple histologic patterns. This type of lung adenocarcinoma is believed to be the first reported case in English language medical literature. Case presentation A 60-year-old Japanese woman was admitted to hospital complaining of dyspnea and died of respiratory failure. She had been suffering from lung cancer with pleural effusion for five y...

  10. Mosaic-pattern vegetation formation and dynamics driven by the water-wind crisscross erosion

    Science.gov (United States)

    Wu, Gao-Lin; Wang, Dong; Liu, Yu; Hao, Hong-Min; Fang, Nu-Fang; Shi, Zhi-Hua

    2016-07-01

    Theoretical explanations for vegetation pattern dynamic emphasized on banded pattern-forming systems on the dynamics of the spot pattern. In this context, we explore the patch pattern forming and development in the desertification land. We hypothesized that spatial heterogeneity of microtopography and soil properties with different patch sizes would determine vegetation pattern dynamics theory. The spatial heterogeneity of microtopography and soil properties with different patch sizes were studied. Differences between the inside and outside of the canopy of soil carbon content and soil total nitrogen content were significantly increasing with patches sizes. Sampling location across vegetation patch was the main factor controlling soil properties. Soil nutrient content and saturated hydraulic conductivity were the largest, while bulk density and the coarse sand content were the lowest at the sampling location of half-way between taproot and downslope edge of the canopy. The height of the mound relative to the adjacent soil interspace between shrubs increased as patches diameter increased at the upslope of the taproot. Hydrological and aeolian processes resulted in spatial distributions of soil moisture, nutrition properties, which lead to patch migrated to downslope rather than upslope. A conceptual model was integrated hydrological and nutrient facilitation and competition effects among the plant-soil in mosaic-pattern patch formation and succession process.

  11. Thermodynamic aspects of nanostructured Ti5Si3 formation during mechanical alloying and its characterization

    Indian Academy of Sciences (India)

    S Sabooni; F Karimzadeh; M H Abbasi

    2012-06-01

    Mechanical alloying (MA) was used to produce Ti5Si3 intermetallic compound with nanocrystalline structure from elemental powders. The structural changes and characterization of powder particles during milling were studied by X-ray diffraction (XRD), scanning electron microscopy (SEM), transmission electron microscopy (TEM), particle size analyser (PSA) and microhardness measurements. MA resulted in gradual formation of disordered Ti5Si3 intermetallic compound with crystallite size of about 15 nm after 45 h of milling. Also a thermodynamic analysis of the process was carried out using Miedema model. The results showed that in the nominal composition of Ti5Si3 intermetallic phase (Si = 0.375), formation of an intermetallic compound has the lowest Gibbs free energy rather than solid solution or amorphous phases. So the MA product is the most stable phase in nominal composition of Ti5Si3. This intermetallic compound exhibits high microhardness value of about 1235 HV.

  12. Biofilm formation on materials into contact with water: hygienic and technical aspects

    International Nuclear Information System (INIS)

    Biofilm formation in man-made water systems has a hygienic concern when it is considered that the continuous detachment of this structure in the water flow, condition representing a potential source of contamination of plumbing and a risk for health, allows also pathogen microorganisms to reach consumers. The trend of biofilm formation was evaluated through series of microbiological analyses performed, under controlled conditions, on pipes made of materials that come into contact with drinking water according to the Decree of Ministry of Health n. 174. The investigation showed that, respect to the other materials, the reticulated polyethylene allows to sustain higher microorganisms concentrations. This characteristic was also observed in biofilms developed in condition of water stagnation compared to biofilm risen on surfaces of pipes under water flow

  13. Theoretical aspects of the formation and management of a environmentally oriented businesses portfolio in the region

    OpenAIRE

    O.V. Shkarupa; I.V. Burych

    2015-01-01

    The aim of the article. The aim of the article is to study the theoretical and methodological principles for environmentally oriented businesses formulating and portfolio management in the region. The results of the analysis. This paper studies the prospects for the formation and management of the environmentally oriented business projects business portfolio. The purpose of this is to create new clusters types which are based on the production capacity of environmental products and service...

  14. How memory of direct animal interactions can lead to territorial pattern formation.

    Science.gov (United States)

    Potts, Jonathan R; Lewis, Mark A

    2016-05-01

    Mechanistic home range analysis (MHRA) is a highly effective tool for understanding spacing patterns of animal populations. It has hitherto focused on populations where animals defend their territories by communicating indirectly, e.g. via scent marks. However, many animal populations defend their territories using direct interactions, such as ritualized aggression. To enable application of MHRA to such populations, we construct a model of direct territorial interactions, using linear stability analysis and energy methods to understand when territorial patterns may form. We show that spatial memory of past interactions is vital for pattern formation, as is memory of 'safe' places, where the animal has visited but not suffered recent territorial encounters. Additionally, the spatial range over which animals make decisions to move is key to understanding the size and shape of their resulting territories. Analysis using energy methods, on a simplified version of our system, shows that stability in the nonlinear system corresponds well to predictions of linear analysis. We also uncover a hysteresis in the process of territory formation, so that formation may depend crucially on initial space-use. Our analysis, in one dimension and two dimensions, provides mathematical groundwork required for extending MHRA to situations where territories are defended by direct encounters. PMID:27146687

  15. Formation of ordered polymer patterns from benzene vapors in a barrier discharge

    International Nuclear Information System (INIS)

    The experimental conditions are found under which the impact of the barrier discharge (BD) on a gas–vapor mixture of benzene, argon and helium results in a spontaneous formation of ordered polymer structures similar to the luminous BD patterns on the electrodes of the reactor. It is shown that the impact of a BD on a Ar–C6H6 mixture leads to the formation of two types of materials: black color column-structure materials (CSMs), measuring ∼100 µm in diameter and 2 mm in height and ∼4–6 mm honeycomb polymer patterns with a well-defined bead-like interface ∼50–100 µm in height. In a He–C6H6 mixture, the CSMs form dendrite-like structures on the dielectric barrier surface of the high-voltage electrode. The patterns formed on the grounded electrode have no clear boundaries. In this paper, the properties of the materials are investigated and the mechanism of their formation is discussed. (paper)

  16. Self-Assembly, Pattern Formation and Growth Phenomena in Nano-Systems

    CERN Document Server

    Nepomnyashchy, Alexander A

    2006-01-01

    Nano-science and nano-technology are rapidly developing scientific and technological areas that deal with physical, chemical and biological processes that occur on nano-meter scale – one millionth of a millimeter. Self-organization and pattern formation play crucial role on nano-scales and promise new, effective routes to control various nano-scales processes. This book contains lecture notes written by the lecturers of the NATO Advanced Study Institute "Self-Assembly, Pattern Formation and Growth Phenomena in Nano-Systems" that took place in St Etienne de Tinee, France, in the fall 2004. They give examples of self-organization phenomena on micro- and nano-scale as well as examples of the interplay between phenomena on nano- and macro-scales leading to complex behavior in various physical, chemical and biological systems. They discuss such fascinating nano-scale self-organization phenomena as self-assembly of quantum dots in thin solid films, pattern formation in liquid crystals caused by light, self-organi...

  17. Formation of ordered polymer patterns from benzene vapors in a barrier discharge

    Science.gov (United States)

    Kudryashov, S.; Ryabov, A.; Shchyogoleva, G.; Tsyro, L.

    2014-10-01

    The experimental conditions are found under which the impact of the barrier discharge (BD) on a gas-vapor mixture of benzene, argon and helium results in a spontaneous formation of ordered polymer structures similar to the luminous BD patterns on the electrodes of the reactor. It is shown that the impact of a BD on a Ar-C6H6 mixture leads to the formation of two types of materials: black color column-structure materials (CSMs), measuring ˜100 µm in diameter and 2 mm in height and ˜4-6 mm honeycomb polymer patterns with a well-defined bead-like interface ˜50-100 µm in height. In a He-C6H6 mixture, the CSMs form dendrite-like structures on the dielectric barrier surface of the high-voltage electrode. The patterns formed on the grounded electrode have no clear boundaries. In this paper, the properties of the materials are investigated and the mechanism of their formation is discussed.

  18. Pattern formation in liquid-vapor systems under periodic potential and shear.

    Science.gov (United States)

    Coclite, A; Gonnella, G; Lamura, A

    2014-06-01

    In this paper the phase behavior and pattern formation in a sheared nonideal fluid under a periodic potential is studied. An isothermal two-dimensional formulation of a lattice Boltzmann scheme for a liquid-vapor system with the van der Waals equation of state is presented and validated. Shear is applied by moving walls and the periodic potential varies along the flow direction. A region of the parameter space, where in the absence of flow a striped phase with oscillating density is stable, will be considered. At low shear rates the periodic patterns are preserved and slightly distorted by the flow. At high shear rates the striped phase loses its stability and traveling waves on the interface between the liquid and vapor regions are observed. These waves spread over the whole system with wavelength only depending on the length of the system. Velocity field patterns, characterized by a single vortex, will also be shown. PMID:25019908

  19. Localization and Pattern Formation in Quantum Physics. I. Phenomena of Localization

    CERN Document Server

    Fedorova, A N; Fedorova, Antonina N.; Zeitlin, Michael G.

    2005-01-01

    In these two related parts we present a set of methods, analytical and numerical, which can illuminate the behaviour of quantum system, especially in the complex systems. The key points demonstrating advantages of this approach are: (i) effects of localization of possible quantum states, more proper than "gaussian-like states"; (ii) effects of non-perturbative multiscales which cannot be calculated by means of perturbation approaches; (iii) effects of formation of complex quantum patterns from localized modes or classification and possible control of the full zoo of quantum states, including (meta) stable localized patterns (waveletons). We'll consider calculations of Wigner functions as the solution of Wigner-Moyal-von Neumann equation(s) corresponding to polynomial Hamiltonians. Modeling demonstrates the appearance of (meta) stable patterns generated by high-localized (coherent) structures or entangled/chaotic behaviour. We can control the type of behaviour on the level of reduced algebraical variational sy...

  20. Constructing universal pattern formation processes governed by reaction-diffusion systems

    Directory of Open Access Journals (Sweden)

    Sen-Zhong Huang

    2002-10-01

    Full Text Available For a given connected compact subset $K$ in $mathbb{R}^n$ we construct a smooth map $F$ on $mathbb{R}^{1+n}$ in such a way that the corresponding reaction-diffusion system $u_t=DDelta u+F(u$ of $n+1$ components $u=(u_0,u_1,dots ,u_n$, accompanying with the homogeneous Neumann boundary condition, has an attractor which is isomorphic to $K$. This implies the following universality: The make-up of a pattern with arbitrary complexity (e.g., a fractal pattern can be realized by a reaction-diffusion system once the vector supply term $F$ has been previously properly constructed. Submitted August 28, 2002. Published October 4, 2002. Math Subject Classifications: 35B40, 70G60, 35Q99 Key Words: Attractor; pattern formation.

  1. 耦合诱导TUring斑图的形成%Turing Pattern Formation Induced by Coupling

    Institute of Scientific and Technical Information of China (English)

    雷爱中; 徐卫国

    2007-01-01

    The coupling action of the CDIMA reaction system is investigated. Our results have shown that a reaction - diffusion equation pair with parameters outside the range for Turing pattern formation can form a stable Turing pattern when it is coupled to one with parameters that produce Turing patterns.%通过数值模拟的方法研究了耦合的CDIMA反应模型.结果显示:处于不能形成图林斑图区域的系统与另一个处于图林斑图区域的系统进行耦合,两系统都能形成图林斑图.

  2. Structural aspects of glass-formation in Ni-Nb melts

    International Nuclear Information System (INIS)

    We report on investigations of the static structure factors of glass-forming Ni59.5Nb40.5 alloy melts by combination of the containerless processing technique of electrostatic levitation with neutron diffraction. By application of the isotopic substitution method, the full set of partial structure factors was determined. The short-range order in liquid Ni59.5Nb40.5 is characterized by a large nearest neighbor coordination number of ZNN = 14.3 and a chemical short-range order with an affinity for the formation of heterogeneous Nb-Ni nearest neighbors. The structure factors observed here in the liquid state closely resemble those reported for amorphous Nb-Ni solids. The comparison with earlier results on the short-range structure in Zr-based glass-forming melts suggests that a large local density of packing, chemical order, and structural frustration are, amongst others, common structural properties of these metallic glass-forming systems, which favor glass-formation.

  3. Structural aspects of glass-formation in Ni-Nb melts

    Energy Technology Data Exchange (ETDEWEB)

    Holland-Moritz, D.; Yang, F.; Gegner, J.; Meyer, A. [Institut für Materialphysik im Weltraum, Deutsches Zentrum für Luft- und Raumfahrt (DLR), 51170 Köln (Germany); Hansen, T. [Institut Laue-Langevin (ILL), 38042 Grenoble (France); Ruiz-Martín, M. D. [Grup de Caracterització de Materials, Departament de Física i Enginyeria Nuclear, Universitat Politècnica de Catalunya, Barcelona (Spain); Institut für Materialphysik im Weltraum, Deutsches Zentrum für Luft- und Raumfahrt (DLR), 51170 Köln (Germany)

    2014-05-28

    We report on investigations of the static structure factors of glass-forming Ni{sub 59.5}Nb{sub 40.5} alloy melts by combination of the containerless processing technique of electrostatic levitation with neutron diffraction. By application of the isotopic substitution method, the full set of partial structure factors was determined. The short-range order in liquid Ni{sub 59.5}Nb{sub 40.5} is characterized by a large nearest neighbor coordination number of Z{sub NN} = 14.3 and a chemical short-range order with an affinity for the formation of heterogeneous Nb-Ni nearest neighbors. The structure factors observed here in the liquid state closely resemble those reported for amorphous Nb-Ni solids. The comparison with earlier results on the short-range structure in Zr-based glass-forming melts suggests that a large local density of packing, chemical order, and structural frustration are, amongst others, common structural properties of these metallic glass-forming systems, which favor glass-formation.

  4. On island landscape pattern of forests in Helan Mountain and its cause of formation

    Institute of Scientific and Technical Information of China (English)

    DENG Hongbing; WANG Yingming; ZHANG Qiaoxian; YAN Yan

    2006-01-01

    Based on the spatial information techniques such as RS, GIS, and GPS, the forest landscape patterns in the Helan Mountain, western China, were studied. The Landsat 5 TM data were used to classify the forest landscapes through RS digital cartography, and then, the landscape characteristics and landscape pattern were analyzed quantificationally. Furthermore, through spatial data collection and spatial analysis of the main disturbances in this area, the cause of landscape formation was studied. The results showed that the total 1177 forest landscape patches could be classified into 21 landscape types, and the forest landscape in the Helan Mountain was island pattern, which was encircled by deserta as matrix. The values of landscape diversity index and landscape fragmentation index were 2.61 and 0.43, respectively. In this area, the landscape pattern was clearly formed and continuously changed in response to geological processes, climate, activities of organisms, forest fire, desertification, human activities and so on. This landscape pattern had an obviously negative effect on the stability and ecosystem services of forests. So, scientific landscape planning and protection should be adopted to improve the sustainability of forest management in this area.

  5. Some aspects of double layer formation in a plasma constrained by a magnetic mirror

    International Nuclear Information System (INIS)

    The shift from wave-generated anomalous resistivity toward the more large-scale effects of magnetic confinement of current carrying plasmas was inspired by the more extensive data on auroral particle distribution functions that were made available, data that may often seem consistent with a dissipation-free acceleration of auroral electrons over an extended altitude range. Efforts to interpret these data have brought new vigor to the concept that a smooth and static electric field can be self-consistently generated by suitable pitch angle anisotropies among the high altitude particle populations, different for electrons and ions, and that such an electric field is both necessary and sufficient to maintain the plasma in a quasi-neutral steady state. Certain aspects of this concept are reviewed and criticized, both from a general theoretical standpoint and from the standpoint of what is known about the magnetospheric environment. It is argued that this concept has flaws and that the actual physical problem is considerably more complicated, requiring a more complex electric field, possibly including double layer structures

  6. Temporal patterns and behavioral characteristics of aggregation formation and spawning in the Bermuda chub ( Kyphosus sectatrix)

    Science.gov (United States)

    Nemeth, Richard S.; Kadison, Elizabeth

    2013-12-01

    Reef fish spawning aggregations are important life history events that occur at specific times and locations and represent the primary mode of reproduction for many species. This paper provides detailed descriptions of aggregation formation and mass spawning of the Bermuda chub ( Kyphosus sectatrix). Spawning coloration and gamete release of K. sectatrix were observed and filmed at the Grammanik Bank, a deep spawning aggregation site used by many different species located on the southern edge of the Puerto Rican shelf 10 km south of St. Thomas, US Virgin Islands. Underwater visual surveys using technical Nitrox and closed circuit re-breathers were conducted from December 2002 to March 2013 and documented spatial and temporal patterns of movement and aggregation formation along 1.5 km of mesophotic reef. The largest aggregations of K. sectatrix (>200 fish) were observed on the Grammanik Bank January to March from 0 to 11 d after the full moon with peak abundance from 60 to 80 d after the winter solstice across all survey years. Aggregation formation of K. sectatrix coincided with the spawning season of Nassau ( Epinephelus striatus) and yellowfin ( Mycteroperca venenosa) groupers. These spatial and temporal patterns of aggregation formation and spawning suggest that K. sectatrix, an herbivore, may also be a transient aggregating species. On several occasions, chubs were observed both pair spawning and mass spawning. Color patterns and behaviors associated with aggregation and spawning are described and compared to spawning characteristics observed in other species, many of which are similar but others that appear unique to K. sectatrix. This represents the first report of a kyphosid species aggregating to spawn and illuminates a portion of the poorly understood life history of the Bermuda chub.

  7. The gender aspect of the formation of values of physical training of students in higher education

    Directory of Open Access Journals (Sweden)

    Marchenko O. Iu.

    2013-09-01

    Full Text Available The analysis of the place of physical education in the hierarchy of values of university students. Addresses gender characteristics of the formation of values in physical education students. The study involved students in the amount of 419 people (206 boys, 213 girls and first-year students (35 girls, 16 boys. The findings suggest that a combination of slightly traditionally masculine and feminine qualities in one person. It was found that in the study of gender differences in the choice of human traits observed distinct gender stereotypes. Among the young men identified the following personality traits: the ability to achieve goals by any means, physical strength, sociability, communication skills. Girls are the following traits: sociability, communication skills, good looks, intelligence and a wide range of interests, the ability to behave in public, optimism and prudence.

  8. Mechanistic aspects of the nucleophilic substitution of pectin. On the formation of chloromethane.

    Science.gov (United States)

    Sailaukhanuly, Yerbolat; Sárossy, Zsuzsa; Carlsen, Lars; Egsgaard, Helge

    2014-09-01

    Chloromethane, accounting for approximately 16% of the tropospheric chlorine, is mainly coming from natural sources. However anthropogenic activities, such as combustion of biomass may contribute significantly as well. The present study focuses on the thermal solid state reaction between pectin, an important constituent of biomass, and chloride ions as found in alkali metal chlorides. The formation of chloromethane is evident with the amount formed being linear with respect to chloride if pectin is in great excess. Thus the reaction is explained as a pseudo first order SN2 reaction between the chloride ion and the methyl ester moiety in pectin. It is suggested that the polymeric nature of pectin plays an active role by an enhanced transport of halides along the carbohydrate chain. Optimal reaction temperature is around 210°C. At higher temperatures the yield of chloromethane decreases due to a thermal decomposition of the pectin. The possible influence of the type of cation is discussed. PMID:24997968

  9. Mechanistic aspects of the nucleophilic substitution of pectin. On the formation of chloromethane

    DEFF Research Database (Denmark)

    Sailaukhanuly, Yerbolat; Sárossy, Zsuzsa; Carlsen, Lars;

    2014-01-01

    Chloromethane, accounting for approximately 16% of the tropospheric chlorine, is mainly coming from natural sources. However anthropogenic activities, such as combustion of biomass may contribute significantly as well. The present study focuses on the thermal solid state reaction between pectin, an...... important constituent of biomass, and chloride ions as found in alkali metal chlorides. The formation of chloromethane is evident with the amount formed being linear with respect to chloride if pectin is in great excess. Thus the reaction is explained as a pseudo first order SN2 reaction between the...... chloride ion and the methyl ester moiety in pectin. It is suggested that the polymeric nature of pectin plays an active role by an enhanced transport of halides along the carbohydrate chain. Optimal reaction temperature is around 210 °C. At higher temperatures the yield of chloromethane decreases due to a...

  10. Theoretical aspects of the formation and management of a environmentally oriented businesses portfolio in the region

    Directory of Open Access Journals (Sweden)

    O.V. Shkarupa

    2015-03-01

    Full Text Available The aim of the article. The aim of the article is to study the theoretical and methodological principles for environmentally oriented businesses formulating and portfolio management in the region. The results of the analysis. This paper studies the prospects for the formation and management of the environmentally oriented business projects business portfolio. The purpose of this is to create new clusters types which are based on the production capacity of environmental products and services in the region. Considering strategic direction of the Ukraine’s Regional Development the authors concluded the necessity of common instrument forming. That would help to accumulate possibilities and priorities of the various innovative structures and business in general in the region. This study considered the theoretical and methodological bases of environmentally oriented projects business portfolio formation and management in the region. Today Ukrainian government system directs the efforts for regional policy funding, development priorities coordination and calls to focus on key projects that provide improvement of innovative infrastructure for economic growth stimulation, creating conditions for private sector development and public access to services. Preference is given to the issues of financial resources concentrating on the key tasks with long term impacts on regional development and national economy as a whole. Taking in account the provisions on strategic vision formation for regional development is evident for single instruments forming that would allow regional governments to manage this process. It would help to accumulate results of activity of various innovative structures and business in general. Environmentally oriented businesses portfolio is a «collection» of strategic business groups and individual businesses (projects, especially, innovative, which are formed within the same regional development strategy (strategy of sustainable

  11. Aspects of modeling regarding the contribution of nitrogen to the formation of grape yields

    Science.gov (United States)

    Blidariu, Cosmin; Boldea, Marius; Sala, Florin

    2013-10-01

    The research focused on determining the influence of organic fertilization equivalent to 150, 200 and 250 kg ha-1 nitrogen, on the productivity indices that participate in the formation of the grape yield: grape berry weight, number of grape berries, rachis weight. Quality indices of grapes were also analyzed: structure index, berry index, as well as yield quality, through dry matter. The distribution analysis of the experimental data revealed that production increase dy/dx increases dramatically with the total fertilizer dose (x + x0), it being proportional to the saturation deficit (a-y), where a is the biologically maximum yield (asymptote). Constants a, b and x0 for each parameter were determined by confrontation with the experimental data, through the least square method, and they were used in modeling the contribution of nitrogen to the formation of grape yields. Although the equivalent quantity of nitrogen in the soil is 150 units, its use is different in the proposed model, depending on the parameter under study. When the focus is on grape berry weight, the enhancement of this parameter is at the level of 97 units, whereas the enhancement of dry matter is 300 units. Analysis of the experimental data revealed that productive parameters are in positive correlation with different intensity levels. Regression analysis, Stuart, A., 1987, facilitated prediction models for the productive characters under study, with high to very high degree of certainty ((Gb = f(Nb):r2 = 0.880;p<0.01;Gs = f(NrB):r2 = 0.852;p<0.01).

  12. Structure and formation of the twisted plywood pattern of collagen fibrils in rat lamellar bone.

    Science.gov (United States)

    Yamamoto, Tsuneyuki; Hasegawa, Tomoka; Sasaki, Muneteru; Hongo, Hiromi; Tabata, Chihiro; Liu, Zhusheng; Li, Minqi; Amizuka, Norio

    2012-04-01

    This study was designed to elucidate details of the structure and formation process of the alternate lamellar pattern known to exist in lamellar bone. For this purpose, we examined basic internal lamellae in femurs of young rats by transmission and scanning electron microscopy, the latter employing two different macerations with NaOH at concentrations of 10 and 24%. Observations after the maceration with 10% NaOH showed that the regular and periodic rotation of collagen fibrils caused an alternation between two types of lamellae: one consisting of transversely and nearly transversely cut fibrils, and the other consisting of longitudinally and nearly longitudinally cut fibrils. This finding confirms the consistency of the twisted plywood model. The maceration method with 24% NaOH removed bone components other than cells, thus allowing for three-dimensional observations of osteoblast morphology. Osteoblasts extended finger-like processes paralleling the inner bone surface, and grouped in such a way that, within a group, the processes arranged in a similar direction. Transmission electron microscopy showed that newly deposited fibrils were arranged alongside these processes. For the formation of the alternating pattern, our findings suggest that: (1) osteoblasts control the collagen fibril arrangement through their finger-like process position; (2) osteoblasts behave similarly within a group; (3) osteoblasts move their processes synchronously and periodically to promote alternating different fibril orientation; and (4) this dynamic sequential deposition of fibrils results in the alternate lamellar (or twisted plywood) pattern. PMID:22362877

  13. NFI-C2 temporal-spatial expression and cellular localization pattern during tooth formation.

    Science.gov (United States)

    Lamani, Ejvis; Gluhak-Heinrich, Jelica; MacDougall, Mary

    2015-12-01

    Currently, little is known regarding critical signaling pathways during later stages of tooth development, especially those associated with root formation. Nfi-c null mice, lacking molar roots, have implicated the transcription factor NFI-C as having an essential role in root development. Previously, we identified three NFI-C isoforms expressed in dental tissues with NFI-C2 being the major transcript. However, the expression pattern of the NFI-C2 protein is not characterized. In this study we performed in situ hybridization and immunohistochemistry using isoform specific probes. We show the production of a NFI-C2 peptide antibody, its characterization, the temporal-spatial expression pattern of the NFI-C2 protein during odontogenesis and sub-cellular localization in dental cells. Moderate NFI-C2 staining, as early as bud stage, was detected mostly in the condensing dental ectomesenchyme. This staining intensified within the dental pulp at later stages culminating in high expression in the dentin producing odontoblasts. The dental epithelium showed slight staining until cytodifferentiation of enamel organ into ameloblasts and stratum intermedium. During root formation NFI-C2 expression was high in the Hertwig's epithelial root sheath and later was found in the fully developed root and its supporting tissues. NFI-C2 cellular staining was cytosolic, associated with the Golgi, and nuclear. These data suggest a broader role for NFI-C during tooth formation than limited to root and periodontal ligament development. PMID:26687982

  14. Ordered nano-scale dimple pattern formation on a titanium alloy (Ti-6Al-4V

    Directory of Open Access Journals (Sweden)

    Yue Wang

    2012-09-01

    Full Text Available Due to the many applications of nanostructured surfaces – including in biomaterials – there is a strong interest in cost- and time-efficient methods for their fabrication. Previously, our group established a simple electrochemical method generating nanoscale patterns on large areas of a number of different metal surfaces. They consist of dimples that are around 6-10 nm deep and hexagonally closed packed with a tunable periodicity of around 50 nm. Ordering requires careful tuning of the surface chemistry, which makes the translation of these findings to multi-component alloys non-obvious. Here, we demonstrate for the first time that such a pattern can also be achieved on the surface of an alloy, namely Ti-6Al-4V. This alloy is of particular interest for biomedical implants. While dimple formation on the main component metals titanium and aluminum has previously been reported (albeit under conditions that differ from each other, we now also report dimple formation on pure vanadium surfaces to occur under very different conditions. Dimple formation occurs preferentially on the (dominant α-phase grains of the alloy. The size of dimples of the alloy material is subject to the electropolishing potential, electrolyte concentration and surface chemical composition, which gives us the opportunity to control the surface features. Since a main application of this alloy are biomedical implants, this level of control will be an important tool for accommodating cell growth.

  15. Physical-geographical aspects of formation of artificial firn-ice massives

    Directory of Open Access Journals (Sweden)

    A. V. Sosnovsky

    2015-03-01

    Full Text Available The paper presents results of analysis of diurnal and potentially possible efficiency of water freezing aimed at construction of artificial infiltration (firn-ice masses on the Russia’s territory. A method of jet ice-formation (winter sprinkling developed in Institute of Geography of the Russian Academy of Sciences is used for freezing of the artificial firn-ice masses. The method applies far-reaching (long-distance sprinkler installations for spraying of water and formation of thick (more than 7 m for a day masses of artificial firn. In winter the sprinkler allows freezing of both the monolithic ice and artificial firn. A practical implementation of this method is licensed and realized for construction of ice passages, bridges, and winter automobile roads. Testing of the method demonstrated that the artificial firn can be used for desalination and purification of polluted salt waters with high efficiency. That is stipulated by both, the high productivity of the method (about 1500 tons of artificial firn for a day at the air temperature of −20°С, and low mineralization of the firn relative to initial salt water. Winter sprinkling is carried out when mean daily air temperature drops below –5 ∞С. Estimating of productivity of the artificial firn and monolithic ice under present-day climatic conditions was made over the Russia’s territory. Analysis of the climate conditions for periods 2001–2010 and 1961–2000 have shown that reduction of the firn productivity changed from 5-10% in Siberia up to 20–40% in central and southern regions of the European Russia. At the present time, a potentially possible volume of the artificial firn freezing being produced in cold seasons changes from 500 thousand tons in northern areas of Yakutia down to 10 thousand in center of European Russia. Productivity of the monolithic ice freezing by a method of thin-layer water pouring is twice lower in central areas of Yakutia than on the Arctic seashores

  16. Free radical formation in DNA: Some new aspects of an old problem

    International Nuclear Information System (INIS)

    Despite extensive efforts over the past three decades or more, there is a continuing debate about the number of different free radicals and their detailed chemical structure obtained from DNA irradiated under various conditions concerning, among others, hydration state, temperature of irradiation or measurement, base composition, and radiation dose or quality. The only proposal accepted unanimously is the 5-yl radical on the base thymine involving net H-gain at carbon C6 denoted T(C6 + H). Its octet spectrum which usually appears, after irradiation at e.g. 77 K, at elevated temperatures (ca. 200 K) provides for an unmistakable fingerprint in Electron Spin Resonance (ESR) spectroscopy, the method of choice for investigating free radicals in general. All other proposals of radical structures, nothing to say about details of their mechanism of formation or their subsequent reactions, have been challenged and are under debate. This apparently disturbing situation can, in the authors view, be traced back to several fundamental reasons which result from inherent limitations of both the sample itself and of the method of investigation

  17. Mathematical aspects of the kinetics of formation and degradation of linear peptide or protein aggregates.

    Science.gov (United States)

    Zhdanov, Vladimir P

    2016-08-01

    In cells, peptides and proteins are sometimes prone to aggregation. In neurons, for example, amyloid β peptides form plaques related to Alzheimer's disease (AD). The corresponding kinetic models either ignore or do not pay attention to degradation of these species. Here, the author proposes a generic kinetic model describing formation and degradation of linear aggregates. The process is assumed to occur via reversible association of monomers and attachment of monomers to or detachment from terminal parts of aggregates. Degradation of monomers is described as a first-order process. Degradation of aggregates is considered to occur at their terminal and internal parts with different rates and these steps are described by first-order equations as well. Irrespective of the choice of the values of the rate constants, the model predicts that eventually the system reaches a stable steady state with the aggregate populations rapidly decreasing with increasing size at large sizes. The corresponding steady-state size distributions of aggregates are illustrated in detail. The transient kinetics are also shown. The observation of AD appears, however, to indicate that the peptide production becomes eventually unstable, i.e., the growth of the peptide population is not properly limited. This is expected to be related to the specifics of the genetic networks controlling the peptide production. Following this line, two likely general networks with, respectively, global negative and positive feedbacks in the peptide production are briefly discussed. PMID:27132946

  18. Oxidatively generated damage to the guanine moiety of DNA: Mechanistic aspects and formation in cells

    International Nuclear Information System (INIS)

    Nuclear DNA and other molecules in living systems are continuously exposed to endogenously generated oxygen species. Such species range from the unreactive superoxide radical (O2.-)-the precursor of hydrogen peroxide (H2O2)-to the highly reactive hydroxyl radical (OH.). Exogenous chemical and physical agents, such as ionizing radiation and the UVA component of solar light, can also oxidatively damage both the bases and the 2-deoxyribose moieties of cellular DNA. Over the last two decades, researchers have made major progress in understanding the oxidation degradation pathways of DNA that are most likely to occur from either oxidative metabolism or exposure to various exogenous agents. In the first part of this Account, we describe the mechanistic features of one-electron oxidation reactions of the guanine base in isolated DNA and related model compounds. These reactions illustrate the complexity of the various degradation pathways involved. Then, we briefly survey the analytical methods that can detect low amounts of oxidized bases and nucleosides in cells as they are formed. Recent data on the formation of oxidized guanine residues in cellular DNA following exposure to UVA light, ionizing radiation, and high-intensity UV pulses are also provided. We discuss these chemical reactions in the context of (OH.) radical, singlet oxygen, and two-quantum photoionization processes. (authors)

  19. Psychomotor education, an aspect of general formation of pre-school children

    Directory of Open Access Journals (Sweden)

    Ardian Shingjergji

    2013-06-01

    Full Text Available Current developments of scientific thinking in the field of education are increasingly demanding in various disciplines for young people as a matter of urgency. It is already known that child development is conditioned by ancestry, socio-cultural environment, including interaction with peers and adults. Albanian institutions (kindergarten compared to contemporary experience in more developed countries have to deal with issues such as: (1 The development of a run or optimal acceleration enrichment motor for kindergarten children, seen as an important element of the formation of the human personality and its preparation to cope with various situations of life ; (2 The role of infrastructure in the natural development of the personality of children and the educational process as a whole; (3 Parental community involvement as a fundamental prerequisite of real development of the child; (4The qualification level of the teaching staff in the elementary education system and the preparation of students teacher. I hope to add my contribution through this paper, not only by identifying the problems above, but also in presenting alternatives of a development model of kindergarten children motors skills progress, compared to contemporary experience in more developed countries. Keywords: ; ; ; ;

  20. Depositional, diagenetic and stratigraphic aspects of microfacies from Riachuelo Formation, Albian, Sergipe Basin, Brazil

    Directory of Open Access Journals (Sweden)

    Caio Vinícius Gabrig Turbay

    2013-12-01

    Full Text Available The rocks of the Riachuelo Formation, Sergipe Basin, Brazil, represent an example of carbonate sedimentation related to the drift phase during the opening of the South Atlantic Ocean. The Carapeba and Brejo quarries exhibit the best onshore outcrops of the drift carbonate section along the Brazilian continental edge. Field studies and microfacies analysis of the outcropped sedimentary section showed six sedimentary deposits related to the physiography of a carbonate shelf. Proximal mixed deposits are represented by the rich-terrigenous dolostone. Levels with alternate layers of fine grained sandstones and siltstones are here related to distal facies of submarine fans deposits. Mudstones with miliolids and textularids represent a lagoonal environment in a semi-restricted middle shelf. Packstones, grainstones and occasionally wackestones with oncoids, intraclasts and peloids represent sedimentary deposits related to the back of shallow sandy bars and environments at the interface with the lagoon. Grainstones whit ooliths, oncoids, intraclasts and bioclasts, with trough cross-bedding, represent a shallower shoreface environment over the shallow carbonate back on outer shelf. Cements and other post- depositional features suggest four different diagenetic environments: a marine phreatic diagenetic environment with active water circulation; b marine phreatic diagenetic environment with stagnant water; c freshwater phreatic diagenetic environment; d burial diagenetic environment. The sedimentary succession is formed by shallowing upward cycles overlain by a possible transgressive surface, which may indicate the passage of a lowstand to a transgressive system tract.

  1. Pattern Formation in Populations with Density-Dependent Movement and Two Interaction Scales.

    Science.gov (United States)

    Martínez-García, Ricardo; Murgui, Clara; Hernández-García, Emilio; López, Cristóbal

    2015-01-01

    We study the spatial patterns formed by a system of interacting particles where the mobility of any individual is determined by the population crowding at two different spatial scales. In this way we model the behavior of some biological organisms (like mussels) that tend to cluster at short ranges as a defensive strategy, and strongly disperse if there is a high population pressure at large ranges for optimizing foraging. We perform stochastic simulations of a particle-level model of the system, and derive and analyze a continuous density description (a nonlinear diffusion equation). In both cases we show that this interplay of scale-dependent-behaviors gives rise to a rich formation of spatial patterns ranging from labyrinths to periodic cluster arrangements. In most cases these clusters have the very peculiar appearance of ring-like structures, i.e., organisms arranging in the perimeter of the clusters, which we discuss in detail. PMID:26147351

  2. Three dimensional simulations of pattern formation during high-pressure, freely localized microwave breakdown in air

    International Nuclear Information System (INIS)

    Recent experiments have demonstrated that a freely localized 100 GHz microwave discharge can propagate towards the microwave source with high speed, forming a complex pattern of self-organized filaments. We present three-dimensional simulations of the formation and propagation of such patterns that reveal more information on their nature and interaction with the electromagnetic waves. The developed three-dimensional Maxwell-plasma solver permits the study of different forms of incident field polarization. Results for linear and circular polarization of the wave are presented and comparisons with recent experiments show a good overall agreement. The three dimensional simulations provide a quantitative analysis of the parameters controlling the time and length scales of the strongly non-linear plasma dynamics and could be useful for potential microwave plasma applications such as aerodynamic flow and combustion control

  3. Pattern formation during the evaporation of a colloidal nanoliter drop: a numerical and experimental study

    CERN Document Server

    Bhardwaj, Rajneesh; Attinger, Daniel

    2010-01-01

    An efficient way to precisely pattern particles on solid surfaces is to dispense and evaporate colloidal drops, as for bioassays. The dried deposits often exhibit complex structures exemplified by the coffee ring pattern, where most particles have accumulated at the periphery of the deposit. In this work, the formation of deposits during the drying of nanoliter colloidal drops on a flat substrate is investigated numerically and experimentally. A finite-element numerical model is developed that solves the Navier-Stokes, heat and mass transport equations in a Lagrangian framework. The diffusion of vapor in the atmosphere is solved numerically, providing an exact boundary condition for the evaporative flux at the droplet-air interface. Laplace stresses and thermal Marangoni stresses are accounted for. The particle concentration is tracked by solving a continuum advection-diffusion equation. Wetting line motion and the interaction of the free surface of the drop with the growing deposit are modeled based on crite...

  4. Continuous fine pattern formation by screen-offset printing using a silicone blanket

    Science.gov (United States)

    Nomura, Ken-ichi; Kusaka, Yasuyuki; Ushijima, Hirobumi; Nagase, Kazuro; Ikedo, Hiroaki; Mitsui, Ryosuke; Takahashi, Seiya; Nakajima, Shin-ichiro; Iwata, Shiro

    2014-09-01

    Screen-offset printing combines screen-printing on a silicone blanket with transference of the print from the blanket to a substrate. The blanket absorbs organic solvents in the ink, and therefore, the ink does not disperse through the material. This prevents blurring and allows fine patterns with widths of a few tens of micrometres to be produced. However, continuous printing deteriorates the pattern’s shape, which may be a result of decay in the absorption abilities of the blanket. Thus, we have developed a new technique for refreshing the blanket by substituting high-boiling-point solvents present on the blanket surface with low-boiling-point solvents. We analyse the efficacy of this technique, and demonstrate continuous fine pattern formation for 100 screen-offset printing processes.

  5. Pattern Formation in Populations with Density-Dependent Movement and Two Interaction Scales.

    Directory of Open Access Journals (Sweden)

    Ricardo Martínez-García

    Full Text Available We study the spatial patterns formed by a system of interacting particles where the mobility of any individual is determined by the population crowding at two different spatial scales. In this way we model the behavior of some biological organisms (like mussels that tend to cluster at short ranges as a defensive strategy, and strongly disperse if there is a high population pressure at large ranges for optimizing foraging. We perform stochastic simulations of a particle-level model of the system, and derive and analyze a continuous density description (a nonlinear diffusion equation. In both cases we show that this interplay of scale-dependent-behaviors gives rise to a rich formation of spatial patterns ranging from labyrinths to periodic cluster arrangements. In most cases these clusters have the very peculiar appearance of ring-like structures, i.e., organisms arranging in the perimeter of the clusters, which we discuss in detail.

  6. Disappearing scales in carps: Re-visiting Kirpichnikov's model on the genetics of scale pattern formation

    KAUST Repository

    Casas, Laura

    2013-12-30

    The body of most fishes is fully covered by scales that typically form tight, partially overlapping rows. While some of the genes controlling the formation and growth of fish scales have been studied, very little is known about the genetic mechanisms regulating scale pattern formation. Although the existence of two genes with two pairs of alleles (S&s and N&n) regulating scale coverage in cyprinids has been predicted by Kirpichnikov and colleagues nearly eighty years ago, their identity was unknown until recently. In 2009, the \\'S\\' gene was found to be a paralog of fibroblast growth factor receptor 1, fgfr1a1, while the second gene called \\'N\\' has not yet been identified. We re-visited the original model of Kirpichnikov that proposed four major scale pattern types and observed a high degree of variation within the so-called scattered phenotype due to which this group was divided into two sub-types: classical mirror and irregular. We also analyzed the survival rates of offspring groups and found a distinct difference between Asian and European crosses. Whereas nude x nude crosses involving at least one parent of Asian origin or hybrid with Asian parent(s) showed the 25% early lethality predicted by Kirpichnikov (due to the lethality of the NN genotype), those with two Hungarian nude parents did not. We further extended Kirpichnikov\\'s work by correlating changes in phenotype (scale-pattern) to the deformations of fins and losses of pharyngeal teeth. We observed phenotypic changes which were not restricted to nudes, as described by Kirpichnikov, but were also present in mirrors (and presumably in linears as well; not analyzed in detail here). We propose that the gradation of phenotypes observed within the scattered group is caused by a gradually decreasing level of signaling (a dosedependent effect) probably due to a concerted action of multiple pathways involved in scale formation. 2013 Casas et al.

  7. WOX2 and polar auxin transport during spruce embryo pattern formation

    OpenAIRE

    Palovaara, Joakim; Hakman, Inger

    2009-01-01

    The WOX family of transcription factors and polar auxin transport (PAT) are both essential for embryonic patterning and thus normal embryo development in angiosperms. Recent analysis by us of WOX-related genes in Picea and Pinus suggests that they play fundamental roles during embryo development also in conifers.1 It has been proposed that there is a connection between the spatial separation of WOX2 and WOX8, and PAT in the formation of the apical-basal axis in Arabidopsis embryos and that bo...

  8. Selective formation of diamond-like carbon coating by surface catalyst patterning

    DEFF Research Database (Denmark)

    Palnichenko, A.V.; Mátéfi-Tempfli, M.; Mátéfi-Tempfli, Stefan;

    2004-01-01

    The selective formation of diamond-like carbon coating by surface catalyst patterning was studied. DLC films was deposited using plasma enhanced chemical vapor deposition, filtered vacuum arc deposition, laser ablation, magnetron sputtering and ion-beam lithography methods. The DLC coatings were...... obtained by means of a single short and intensive carbon plasma deposition pulse. The deposited DLC coating was characterized by micro-Raman spectroscopy measurements. The DLC coating process gave rise to wide potential possibilities in micro-devices manufacturing productions....

  9. DSA patterning options for FinFET formation at 7nm node

    Science.gov (United States)

    Liu, Chi-Chun C.; Franke, Elliott; Lie, Fee Li; Sieg, Stuart; Tsai, Hsinyu; Lai, Kafai; Truong, Hoa; Farrell, Richard; Somervell, Mark; Sanders, Daniel; Felix, Nelson; Guillorn, Michael; Burns, Sean; Hetzer, David; Ko, Akiteru; Arnold, John; Colburn, Matthew

    2016-03-01

    Several 27nm-pitch directed self-assembly (DSA) processes targeting fin formation for FinFET device fabrication are studied in a 300mm pilot line environment, including chemoepitaxy for a conventional Fin arrays, graphoepitaxy for a customization approach and a hybrid approach for self-aligned Fin cut. The trade-off between each DSA flow is discussed in terms of placement error, Fin CD/profile uniformity, and restricted design. Challenges in pattern transfer are observed and process optimization are discussed. Finally, silicon Fins with 100nm depth and on-target CD using different DSA options with either lithographic or self-aligned customization approach are demonstrated.

  10. Pattern formation in a complex Swift-Hohenberg equation with phase bistability

    CERN Document Server

    de Valcárcel, Manuel Martínez-Quesada Germán J

    2016-01-01

    We study pattern formation in a complex Swift Hohenberg equation with phase-sensitive (parametric) gain. Such an equation serves as a universal order parameter equation describing the onset of spontaneous oscillations in extended systems submitted to a kind of forcing dubbed rocking when the instability is towards long wavelengths. Applications include two-level lasers and photorefractive oscillators. Under rocking, the original continuous phase symmetry of the system is replaced by a discrete one, so that phase bistability emerges. This leads to the spontaneous formation of phase-locked spatial structures like phase domains and dark-ring (phase-) cavity solitons. Stability of the homogeneous solutions is studied and numerical simulations are made covering all the dynamical regimes of the model, which turn out to be very rich. Formal derivations of the rocked complex Swift-Hohenberg equation, using multiple scale techniques, are given for the two-level laser and the photorefractive oscillator.

  11. Pattern formation in polymerising actin flocks: spirals, spots and waves without nonlinear chemistry

    CERN Document Server

    Goff, Thomas Le; Marenduzzo, Davide

    2016-01-01

    We propose a model solely based on actin treadmilling and polymerisation which describes many characteristic states of actin wave formation: spots, spirals and travelling waves. In our model, as in experiments on cell recovering motility following actin depolymerisation, we choose an isotropic low density initial condition; polymerisation of actin filaments then raises the density towards the Onsager threshold where they align. We show that this alignment, in turn, destabilizes the isotropic phase and generically induces transient actin spots or spirals as part of the dynamical pathway towards a polarized phase which can either be uniform or consist of a series of actin-wave trains (flocks). Our results uncover a universal route to actin wave formation in the absence of any system specific nonlinear biochemistry, and it may help understand the mechanism underlying the observation of actin spots and waves in vivo. They also suggest a minimal setup to design similar patterns in vitro.

  12. Hydrologic Connectivity as a Window into Pattern Conditions and Formation Processes in Aquatic Ecosystems

    Science.gov (United States)

    Larsen, L. G.; Choi, J.; Nungesser, M. K.; Harvey, J. W.

    2011-12-01

    Patterned aquatic ecosystems exhibit different types and degrees of hydrologic connectivity, from isolated open-water patches in some inland marshes, to cross-slope strings and flarks of striped fens, to along-slope ridges and sloughs of low-gradient subtropical wetlands, to dendritic channels of coastal marshes. The nature and degree of this connectivity are closely linked to landscape function. For example, hydrologic connectivity perpendicular to river channel thalwegs relates to the exchange of sediment and nutrients between channels and floodplains, whereas connectivity parallel to a dominant flow direction affects fish migration or the likelihood of contaminant transport. Characteristics of hydrologic connectivity reflect not only the results of landscape pattern but also the mechanisms responsible for pattern creation. Quantifying those connectivity characteristics provides a robust means to identify landscapes likely formed under a consistent set of processes or to compare the output of landscape simulation models to actual landscapes in order to determine whether the models capture the most relevant landscape formation processes. However, established methods for quantifying isotropic patch connectivity are often ill suited for strongly patterned landscapes or hydroscapes in which directional flow is important. Using graph theory principles, we developed two alternative indices of directional hydrologic connectivity: the maximum flow index (MFI) and directional connectivity index (DCI), which quantify the connectivity of flow paths along a particular axis of interest. The MFI is sensitive to the existence of any hydrologic connection along the direction of interest, whereas the DCI is sensitive to the linearity of connections along that direction. Curves of directional connectivity over a range of angular bearings provide a quantitative, information-dense representation of landscape structure that can be related to subtle differences in the physical

  13. Formation of personnel corps of engineers in the Urals: sociological aspect

    Directory of Open Access Journals (Sweden)

    Boris Sergeevich Pavlov

    2012-03-01

    Full Text Available In terms of crisis economic development, one of priority goals for the technical institutes of higher education is to train engineers who are competitive on the regional labour markets. The main root of the problem of low prestige of the engineering profession in Russia, the slippage in the personnel training in technical universities lies in the depreciation of engineering work, and reduction of its social and economic attractiveness. The gap between science, education and industry leads to aging of engineering staff at the manufactures and to migration of the most talented engineers into other fields of activity. This paper analyzes current problems of engineers training organization in the Urals. The causes of sharp decline of the engineering profession social status in Russia, the fall of interest of secondary school graduates to continuation of their studies in technical institutes of higher education are reviewed. The authors show that the formation of engineering competence as a defining personal and vocational quality of a specialist involves actualization of the student's motivation, one's active and purposeful adaptation to the educational process, increasing one's responsibility for mastering the curriculum. Conclusions and suggestions of the authors are based on the results of a comprehensive sociological research conducted by them in 2011 in five high schools of the Urals (Yekaterinburg, Nizhnevartovsk and Chelyabinsk. The survey showed that during the stage of young specialists' preparation, cooperation in the «university - enterprise» system is actually shifted to the interaction, in fact, between institute of higher education and young professionals who act as the sellers of their labour. The authors believe that it makes sense to roll over (or rather - to stimulate the active engineering work of the most productive engineering professionals who have reached retirement age. Equally sharp and critical are the issues of

  14. Simple and non-toxic fabrication of poly(vinyl alcohol)-patterned polymer surface for the formation of cell patterns

    International Nuclear Information System (INIS)

    Graphical abstract: - Highlights: • Negative PVA patterns were formed on NPS substrates by selective ion irradiation. • The surface of PVA patterns was more hydrophilic than that of the NPS substrate. • Well-organized cell patterns were created on the PVA-patterned NPS substrates. • It can be due to the preferential adsorption of serum proteins on PVA patterns. - Abstract: In this study, a facile and non-toxic method for the formation of cell-adhesive poly(vinyl alcohol) (PVA) patterns on the surface of a non-biological polystyrene substrate (NPS) is developed to control cellular micro-organization. PVA thin films spin-coated onto the NPS are selectively irradiated with 150 keV H+ ions through a pattern mask and developed with deionized water to form negative-type PVA patterns. Well-defined stripe patterns of PVA with a width of 100 μm are created on the NPS at a higher fluence than 5 × 1015 ions/cm2, and their surface chemical compositions are changed by ion irradiation without any significant morphological change. Based on the results of the protein adsorption test and in vitro cell culture, cancer cells are preferentially adhered and proliferated onto the more hydrophilic PVA regions of the PVA-patterned NPS, resulting in well-defined cell patterns

  15. Simple and non-toxic fabrication of poly(vinyl alcohol)-patterned polymer surface for the formation of cell patterns

    Energy Technology Data Exchange (ETDEWEB)

    Hwang, In-Tae; Jin, Yu-Ran [Radiation Research Division for Industry and Environment, Advanced Radiation Technology Institute, Korea Atomic Energy Research Institute, Jeongeup-si, Jeollabuk-do 580-185 (Korea, Republic of); Oh, Min-Suk [POSCO Technical Research Laboratories, 699 Gumho-dong, Gwangyang, Jeonnam 545-090 (Korea, Republic of); Jung, Chan-Hee, E-mail: jch@kaeri.re.kr [Radiation Research Division for Industry and Environment, Advanced Radiation Technology Institute, Korea Atomic Energy Research Institute, Jeongeup-si, Jeollabuk-do 580-185 (Korea, Republic of); Choi, Jae-Hak, E-mail: jaehakchoi@cnu.ac.kr [Department of Polymer Science and Engineering, Chungnam National University, Yuseong-gu, Daejeon 305-764 (Korea, Republic of)

    2014-10-15

    Graphical abstract: - Highlights: • Negative PVA patterns were formed on NPS substrates by selective ion irradiation. • The surface of PVA patterns was more hydrophilic than that of the NPS substrate. • Well-organized cell patterns were created on the PVA-patterned NPS substrates. • It can be due to the preferential adsorption of serum proteins on PVA patterns. - Abstract: In this study, a facile and non-toxic method for the formation of cell-adhesive poly(vinyl alcohol) (PVA) patterns on the surface of a non-biological polystyrene substrate (NPS) is developed to control cellular micro-organization. PVA thin films spin-coated onto the NPS are selectively irradiated with 150 keV H{sup +} ions through a pattern mask and developed with deionized water to form negative-type PVA patterns. Well-defined stripe patterns of PVA with a width of 100 μm are created on the NPS at a higher fluence than 5 × 10{sup 15} ions/cm{sup 2}, and their surface chemical compositions are changed by ion irradiation without any significant morphological change. Based on the results of the protein adsorption test and in vitro cell culture, cancer cells are preferentially adhered and proliferated onto the more hydrophilic PVA regions of the PVA-patterned NPS, resulting in well-defined cell patterns.

  16. Theoretical approaches to holistic biological features: Pattern formation, neural networks and the brain-mind relation

    Indian Academy of Sciences (India)

    Alfred Gierer

    2002-06-01

    The topic of this article is the relation between bottom-up and top-down, reductionist and ``holistic” approaches to the solution of basic biological problems. While there is no doubt that the laws of physics apply to all events in space and time, including the domains of life, understanding biology depends not only on elucidating the role of the molecules involved, but, to an increasing extent, on systems theoretical approaches in diverse fields of the life sciences. Examples discussed in this article are the generation of spatial patterns in development by the interplay of autocatalysis and lateral inhibition; the evolution of integrating capabilities of the human brain, such as cognition-based empathy; and both neurobiological and epistemological aspects of scientific theories of consciousness and the mind.

  17. Turing instability and pattern formation in a two-population neuronal network model

    Science.gov (United States)

    Wyller, John; Blomquist, Patrick; Einevoll, Gaute T.

    2007-01-01

    A two-population firing-rate model describing the dynamics of excitatory and inhibitory neural activity in one spatial dimension is investigated with respect to formation of patterns, in particular stationary periodic patterns and spatiotemporal oscillations. Conditions for existence of spatially homogeneous equilibrium states are first determined, and the stability properties of these equilibria are investigated. It is shown that the nonlocal synaptic interactions may promote a finite bandwidth instability in a way analogous to diffusion effects in the classical Turing instability for reaction-diffusion equations and modulational instability in the theory of nonlinear waves in nonlocal defocusing Kerr media. Our analysis relies on the wave-number dependent invariants of the 2×2-matrix representing the spatially Fourier-transformed linearized evolution equations. The generic picture which emerges is an instability consisting of a finite set of well-separated unstable bands in wave-number space (gain bands). The case with symmetrical, exponentially decaying connectivity functions is investigated in detail, allowing for a more comprehensive analysis of the gain-band structure, and, in particular, conditions for the excitation of a single gain band through a Turing-Hopf bifurcation with the relative inhibition time constant as control parameter. Two typical situations emerge depending on the thresholds and inclinations of the sigmoidal firing-rate functions: (i) A single gain-band is excited through a Turing-Hopf bifurcation, and the resulting state is a spatiotemporally oscillating pattern, or (ii) the instability develops into a stationary periodic pattern, i.e. a set of equidistant bumps. The dependence of instability-type on the inclinations of the firing-rate function and the time constant are comprehensively investigated, demonstrating, for example, that only stationary patterns can be generated for sufficiently small inhibitory time constants. The nonlinear

  18. Dynamic Pattern Formation for Wings of Pterygota in an Eclosion ---Pattern Analysis for Wings with the Imago---

    Science.gov (United States)

    Seino, M.; Kakazu, Y.

    The vein and cell patterns for the fore and hind wing of Lepidoptera, Hemiptera, Orthoptera and Odonata are analyzed and discussed. For vein patterns of them, the fractal properties are shown and the inequality between four orders is obtained. The nature of wings observed by mass distributions for fractal dimensions of the vein pattern is presented.

  19. Influence of patterned topographic features on the formation of cardiac cell clusters and their rhythmic activities

    International Nuclear Information System (INIS)

    In conventional primary cultures, cardiac cells prepared from a newborn rat undergo spontaneous formation of cell clusters after several days. These cell clusters may be non-homogeneously distributed on a flat surface and show irregular beating which can be recorded by calcium ion imaging. In order to improve the cell cluster homogeneity and the beating regularity, patterned topographic features were used to guide the cellular growth and the cell layer formation. On the substrate with an array of broadly spaced cross features made of photoresist, cells grew on the places that were not occupied by the crosses and thus formed a cell layer with interconnected cell clusters. Accordingly, spatially coordinated regular beating could be recorded over the whole patterned area. In contrast, when cultured on the substrate with broadly spaced but inter-connected cross features, the cardiac cell layer showed beatings which were neither coordinated in space nor regular in time. Finally, when cultured on the substrate with narrowly spaced features, the cell beating became spatially coordinated but still remained irregular. Our results suggest a way to improve the rhythmic property of cultured cardiac cell layers which might be useful for further investigations. (paper)

  20. Pickering emulsions stabilized by oppositely charged colloids: Stability and pattern formation

    Science.gov (United States)

    Christdoss Pushpam, Sam David; Basavaraj, Madivala G.; Mani, Ethayaraja

    2015-11-01

    A binary mixture of oppositely charged colloids can be used to stabilize water-in-oil or oil-in-water emulsions. A Monte Carlo simulation study to address the effect of charge ratio of colloids on the stability of Pickering emulsions is presented. The colloidal particles at the interface are modeled as aligned dipolar hard spheres, with attractive interaction between unlike-charged and repulsive interaction between like-charged particles. The optimum composition (fraction of positively charged particles) required for the stabilization corresponds to a minimum in the interaction energy per particle. In addition, for each charge ratio, there is a range of compositions where emulsions can be stabilized. The structural arrangement of particles or the pattern formation at the emulsion interface is strongly influenced by the charge ratio. We find well-mixed isotropic, square, and hexagonal arrangements of particles on the emulsion surface for different compositions at a given charge ratio. The distribution of coordination numbers is calculated to characterize structural features. The simulation study is useful for the rational design of Pickering emulsifications wherein oppositely charged colloids are used, and for the control of pattern formation that can be useful for the synthesis of colloidosomes and porous shells derived thereof.

  1. The Influence of Gene Expression Time Delays on Gierer–Meinhardt Pattern Formation Systems

    KAUST Repository

    Seirin Lee, S.

    2010-03-23

    There are numerous examples of morphogen gradients controlling long range signalling in developmental and cellular systems. The prospect of two such interacting morphogens instigating long range self-organisation in biological systems via a Turing bifurcation has been explored, postulated, or implicated in the context of numerous developmental processes. However, modelling investigations of cellular systems typically neglect the influence of gene expression on such dynamics, even though transcription and translation are observed to be important in morphogenetic systems. In particular, the influence of gene expression on a large class of Turing bifurcation models, namely those with pure kinetics such as the Gierer-Meinhardt system, is unexplored. Our investigations demonstrate that the behaviour of the Gierer-Meinhardt model profoundly changes on the inclusion of gene expression dynamics and is sensitive to the sub-cellular details of gene expression. Features such as concentration blow up, morphogen oscillations and radical sensitivities to the duration of gene expression are observed and, at best, severely restrict the possible parameter spaces for feasible biological behaviour. These results also indicate that the behaviour of Turing pattern formation systems on the inclusion of gene expression time delays may provide a means of distinguishing between possible forms of interaction kinetics. Finally, this study also emphasises that sub-cellular and gene expression dynamics should not be simply neglected in models of long range biological pattern formation via morphogens. © 2010 Society for Mathematical Biology.

  2. Tissue growth controlled by geometric boundary conditions: a simple model recapitulating aspects of callus formation and bone healing.

    Science.gov (United States)

    Fischer, F Dieter; Zickler, Gerald A; Dunlop, John W C; Fratzl, Peter

    2015-06-01

    The shape of tissues arises from a subtle interplay between biochemical driving forces, leading to cell growth, division and extracellular matrix formation, and the physical constraints of the surrounding environment, giving rise to mechanical signals for the cells. Despite the inherent complexity of such systems, much can still be learnt by treating tissues that constantly remodel as simple fluids. In this approach, remodelling relaxes all internal stresses except for the pressure which is counterbalanced by the surface stress. Our model is used to investigate how wettable substrates influence the stability of tissue nodules. It turns out for a growing tissue nodule in free space, the model predicts only two states: either the tissue shrinks and disappears, or it keeps growing indefinitely. However, as soon as the tissue wets a substrate, stable equilibrium configurations become possible. Furthermore, by investigating more complex substrate geometries, such as tissue growing at the end of a hollow cylinder, we see features reminiscent of healing processes in long bones, such as the existence of a critical gap size above which healing does not occur. Despite its simplicity, the model may be useful in describing various aspects related to tissue growth, including biofilm formation and cancer metastases. PMID:26018964

  3. Dynamic coupling of pattern formation and morphogenesis in the developing vertebrate retina.

    Science.gov (United States)

    Picker, Alexander; Cavodeassi, Florencia; Machate, Anja; Bernauer, Sabine; Hans, Stefan; Abe, Gembu; Kawakami, Koichi; Wilson, Stephen W; Brand, Michael

    2009-10-01

    During embryonic development, pattern formation must be tightly synchronized with tissue morphogenesis to coordinate the establishment of the spatial identities of cells with their movements. In the vertebrate retina, patterning along the dorsal-ventral and nasal-temporal (anterior-posterior) axes is required for correct spatial representation in the retinotectal map. However, it is unknown how specification of axial cell positions in the retina occurs during the complex process of early eye morphogenesis. Studying zebrafish embryos, we show that morphogenetic tissue rearrangements during eye evagination result in progenitor cells in the nasal half of the retina primordium being brought into proximity to the sources of three fibroblast growth factors, Fgf8/3/24, outside the eye. Triple-mutant analysis shows that this combined Fgf signal fully controls nasal retina identity by regulating the nasal transcription factor Foxg1. Surprisingly, nasal-temporal axis specification occurs very early along the dorsal-ventral axis of the evaginating eye. By in vivo imaging GFP-tagged retinal progenitor cells, we find that subsequent eye morphogenesis requires gradual tissue compaction in the nasal half and directed cell movements into the temporal half of the retina. Balancing these processes drives the progressive alignment of the nasal-temporal retina axis with the anterior-posterior body axis and is controlled by a feed-forward effect of Fgf signaling on Foxg1-mediated cell cohesion. Thus, the mechanistic coupling and dynamic synchronization of tissue patterning with morphogenetic cell behavior through Fgf signaling leads to the graded allocation of cell positional identity in the eye, underlying retinotectal map formation. PMID:19823566

  4. Dynamic model based on voltage transfer curve for pattern formation in dielectric barrier glow discharge

    International Nuclear Information System (INIS)

    Simulation work is very important for understanding the formation of self-organized discharge patterns. Previous works have witnessed different models derived from other systems for simulation of discharge pattern, but most of these models are complicated and time-consuming. In this paper, we introduce a convenient phenomenological dynamic model based on the basic dynamic process of glow discharge and the voltage transfer curve (VTC) to study the dielectric barrier glow discharge (DBGD) pattern. VTC is an important characteristic of DBGD, which plots the change of wall voltage after a discharge as a function of the initial total gap voltage. In the modeling, the combined effect of the discharge conditions is included in VTC, and the activation-inhibition effect is expressed by a spatial interaction term. Besides, the model reduces the dimensionality of the system by just considering the integration effect of current flow. All these greatly facilitate the construction of this model. Numerical simulations turn out to be in good accordance with our previous fluid modeling and experimental result

  5. Mechanism Underlying the Spatial Pattern Formation of Dominant Tree Species in a Natural Secondary Forest.

    Directory of Open Access Journals (Sweden)

    Guodong Jia

    Full Text Available Studying the spatial pattern of plant species may provide significant insights into processes and mechanisms that maintain stand stability. To better understand the dynamics of naturally regenerated secondary forests, univariate and bivariate Ripley's L(r functions were employed to evaluate intra-/interspecific relationships of four dominant tree species (Populus davidiana, Betula platyphylla, Larix gmelinii and Acer mono and to distinguish the underlying mechanism of spatial distribution. The results showed that the distribution of soil, water and nutrients was not fragmented but presented clear gradients. An overall aggregated distribution existed at most distances. No correlation was found between the spatial pattern of soil conditions and that of trees. Both positive and negative intra- and interspecific relationships were found between different DBH classes at various distances. Large trees did not show systematic inhibition of the saplings. By contrast, the inhibition intensified as the height differences increased between the compared pairs. Except for Larix, universal inhibition of saplings by upper layer trees occurred among other species, and this reflected the vertical competition for light. Therefore, we believe that competition for light rather than soil nutrients underlies the mechanism driving the formation of stand spatial pattern in the rocky mountainous areas examined.

  6. Accelerated fluctuation analysis by graphic cards and complex pattern formation in financial markets

    International Nuclear Information System (INIS)

    The compute unified device architecture is an almost conventional programming approach for managing computations on a graphics processing unit (GPU) as a data-parallel computing device. With a maximum number of 240 cores in combination with a high memory bandwidth, a recent GPU offers resources for computational physics. We apply this technology to methods of fluctuation analysis, which includes determination of the scaling behavior of a stochastic process and the equilibrium autocorrelation function. Additionally, the recently introduced pattern formation conformity (Preis T et al 2008 Europhys. Lett. 82 68005), which quantifies pattern-based complex short-time correlations of a time series, is calculated on a GPU and analyzed in detail. Results are obtained up to 84 times faster than on a current central processing unit core. When we apply this method to high-frequency time series of the German BUND future, we find significant pattern-based correlations on short time scales. Furthermore, an anti-persistent behavior can be found on short time scales. Additionally, we compare the recent GPU generation, which provides a theoretical peak performance of up to roughly 1012 floating point operations per second with the previous one.

  7. Dynamic model based on voltage transfer curve for pattern formation in dielectric barrier glow discharge

    Science.gov (United States)

    Li, Ben; He, Feng; Duan, Xiaoxi; Ouyang, Jiting

    2015-12-01

    Simulation work is very important for understanding the formation of self-organized discharge patterns. Previous works have witnessed different models derived from other systems for simulation of discharge pattern, but most of these models are complicated and time-consuming. In this paper, we introduce a convenient phenomenological dynamic model based on the basic dynamic process of glow discharge and the voltage transfer curve (VTC) to study the dielectric barrier glow discharge (DBGD) pattern. VTC is an important characteristic of DBGD, which plots the change of wall voltage after a discharge as a function of the initial total gap voltage. In the modeling, the combined effect of the discharge conditions is included in VTC, and the activation-inhibition effect is expressed by a spatial interaction term. Besides, the model reduces the dimensionality of the system by just considering the integration effect of current flow. All these greatly facilitate the construction of this model. Numerical simulations turn out to be in good accordance with our previous fluid modeling and experimental result.

  8. Dynamic model based on voltage transfer curve for pattern formation in dielectric barrier glow discharge

    Energy Technology Data Exchange (ETDEWEB)

    Li, Ben; He, Feng; Ouyang, Jiting, E-mail: jtouyang@bit.edu.cn [School of Physics, Beijing Institute of Technology, Beijing 100081 (China); Duan, Xiaoxi [Research Center of Laser Fusion, CAEP, Mianyang 621900 (China)

    2015-12-15

    Simulation work is very important for understanding the formation of self-organized discharge patterns. Previous works have witnessed different models derived from other systems for simulation of discharge pattern, but most of these models are complicated and time-consuming. In this paper, we introduce a convenient phenomenological dynamic model based on the basic dynamic process of glow discharge and the voltage transfer curve (VTC) to study the dielectric barrier glow discharge (DBGD) pattern. VTC is an important characteristic of DBGD, which plots the change of wall voltage after a discharge as a function of the initial total gap voltage. In the modeling, the combined effect of the discharge conditions is included in VTC, and the activation-inhibition effect is expressed by a spatial interaction term. Besides, the model reduces the dimensionality of the system by just considering the integration effect of current flow. All these greatly facilitate the construction of this model. Numerical simulations turn out to be in good accordance with our previous fluid modeling and experimental result.

  9. Photo-induced self-organized pattern formation in bio-synthesized nanomaterials

    Science.gov (United States)

    Kukhtarev, Nickolai V.; Kukhtareva, Tatiana; Okafor, Florence; Johnson, Anita

    2011-09-01

    We have observed a dynamic self-organization of laser scattering from the biosynthesized nanofluids with silver and gold nanoparticles. Various procedures for nanofluid synthesis suitable for different applications are under constant investigation. In our present research the green biosynthesis process has been used for noble nanoparticles production. The aqueous solution of Magnolia Grandiflora leaves has been used as a reductant for silver and gold nanofluids.. We have applied the UV-visible spectroscopy method to control reaction process, fluorescent spectroscopy and nonlinear interferometric imaging experiments for characterization of nanofluids. From the number of laser-induced photothermal interferometric fringes it is possible to estimate the nonlinear refractive index coefficient changes. The kinetics observed in the pump-probe experiments with blue and red CW laser allowed us to estimate a timescale (~1s) of photothermal lens formation and dissipation. Moreover, we have observed the very exciting and unusual phenomena of self-organization of the laser scattering reflected from the fluid's surface. The diverse regular diffraction patterns (hexagons, rolls, squares etc), resembling diffraction of X-rays on crystal structures, were self-organized in biosynthesized solutions of nanoparticles. From the angular size of the observed hexagonal diffraction patterns it was possible to estimate the diameter of diffracting nanoclusters as 18 microns for silver and gold nanofluids and 9 microns for the Magnolia broth. The kinetics of the hexagonal scattering shows a quasiperiodic pattern, with a period of about 12 seconds with the slow build-up and sharp disappearance of scattering.

  10. Spermidine, but not spermine, is essential for pigment pattern formation in zebrafish

    Science.gov (United States)

    Frohnhöfer, Hans Georg; Geiger-Rudolph, Silke; Pattky, Martin; Meixner, Martin; Huhn, Carolin; Maischein, Hans-Martin; Geisler, Robert; Gehring, Ines; Maderspacher, Florian; Nüsslein-Volhard, Christiane

    2016-01-01

    ABSTRACT Polyamines are small poly-cations essential for all cellular life. The main polyamines present in metazoans are putrescine, spermidine and spermine. Their exact functions are still largely unclear; however, they are involved in a wide variety of processes affecting cell growth, proliferation, apoptosis and aging. Here we identify idefix, a mutation in the zebrafish gene encoding the enzyme spermidine synthase, leading to a severe reduction in spermidine levels as shown by capillary electrophoresis-mass spectrometry. We show that spermidine, but not spermine, is essential for early development, organogenesis and colour pattern formation. Whereas in other vertebrates spermidine deficiency leads to very early embryonic lethality, maternally provided spermidine synthase in zebrafish is sufficient to rescue the early developmental defects. This allows us to uncouple them from events occurring later during colour patterning. Factors involved in the cellular interactions essential for colour patterning, likely targets for spermidine, are the gap junction components Cx41.8, Cx39.4, and Kir7.1, an inwardly rectifying potassium channel, all known to be regulated by polyamines. Thus, zebrafish provide a vertebrate model to study the in vivo effects of polyamines. PMID:27215328

  11. In situ formation and photo patterning of emissive quantum dots in small organic molecules.

    Science.gov (United States)

    Bansal, Ashu K; Sajjad, Muhammad T; Antolini, Francesco; Stroea, Lenuta; Gečys, Paulius; Raciukaitis, Gediminas; André, Pascal; Hirzer, Andreas; Schmidt, Volker; Ortolani, Luca; Toffanin, Stefano; Allard, Sybille; Scherf, Ullrich; Samuel, Ifor D W

    2015-07-01

    Nanostructured composites of inorganic and organic materials are attracting extensive interest for electronic and optoelectronic device applications. Here we report a novel method for the fabrication and patterning of metal selenide nanoparticles in organic semiconductor films that is compatible with solution processable large area device manufacturing. Our approach is based upon the controlled in situ decomposition of a cadmium selenide precursor complex in a film of the electron transporting material 1,3,5-tris(N-phenyl-benzimidazol-2-yl)-benzene (TPBI) by thermal and optical methods. In particular, we show that the photoluminescence quantum yield (PLQY) of the thermally converted CdSe quantum dots (QDs) in the TPBI film is up to 15%. We also show that laser illumination can form the QDs from the precursor. This is an important result as it enables direct laser patterning (DLP) of the QDs. DLP was performed on these nanocomposites using a picosecond laser. Confocal microscopy shows the formation of emissive QDs after laser irradiation. The optical and structural properties of the QDs were also analysed by means of UV-Vis, PL spectroscopy and transmission electron microscopy (TEM). The results show that the QDs are well distributed across the film and their emission can be tuned over a wide range by varying the temperature or irradiated laser power on the blend films. Our findings provide a route to the low cost patterning of hybrid electroluminescent devices. PMID:26062105

  12. Mechanism Underlying the Spatial Pattern Formation of Dominant Tree Species in a Natural Secondary Forest.

    Science.gov (United States)

    Jia, Guodong; Yu, Xinxiao; Fan, Dengxing; Jia, Jianbo

    2016-01-01

    Studying the spatial pattern of plant species may provide significant insights into processes and mechanisms that maintain stand stability. To better understand the dynamics of naturally regenerated secondary forests, univariate and bivariate Ripley's L(r) functions were employed to evaluate intra-/interspecific relationships of four dominant tree species (Populus davidiana, Betula platyphylla, Larix gmelinii and Acer mono) and to distinguish the underlying mechanism of spatial distribution. The results showed that the distribution of soil, water and nutrients was not fragmented but presented clear gradients. An overall aggregated distribution existed at most distances. No correlation was found between the spatial pattern of soil conditions and that of trees. Both positive and negative intra- and interspecific relationships were found between different DBH classes at various distances. Large trees did not show systematic inhibition of the saplings. By contrast, the inhibition intensified as the height differences increased between the compared pairs. Except for Larix, universal inhibition of saplings by upper layer trees occurred among other species, and this reflected the vertical competition for light. Therefore, we believe that competition for light rather than soil nutrients underlies the mechanism driving the formation of stand spatial pattern in the rocky mountainous areas examined. PMID:27028757

  13. In vitro biofilm formation by uropathogenic Escherichia coliand their antimicrobial susceptibility pattern

    Institute of Scientific and Technical Information of China (English)

    Poovendran Ponnusamy; Vidhya Natarajan; Murugan Sevanan

    2012-01-01

    Objective:To detect in vitro biofilm formation of uropathogenic Escherichia coli(E. coli)(UPEC) strains isolated from urine specimens and also to determine their antimicrobial susceptibility pattern using 13 commonly used antibiotics.Methods: The present study comprised of166 urine specimens collected from tertiary care hospitals in and around Coimbatore, South India. All the specimens were subjected to gram staining, bacterial culture and theE. coli strains were screened for biofilm formation using Tube Method(TM), Congo Red Agar(CRA) and Tissue Culture Plate method(TCP) respectively. Subsequently, the antimicrobial susceptibility test was performed by Kirby Bauer-disk diffusion method for the biofilm and non-biofilm producingE. colistrains.Results: Of the100 (60.2 %)E. coli strains,72 strains displayed a biofilm positive phenotype under the optimized conditions in the Tube Method and the strains were classified as highly positive(17, 23.6%), moderate positive(19, 26.3 %) and weakly positive(36, 50.0 %), similarly under the optimized conditions on Congo Red agar medium, biofilm positive phenotype strains were classified as highly positive(23, 23 %), moderate positive(37, 37 %)and weakly positive (40, 40%). While inTCP method, the biofilm positive phenotype strains were also classified as highly positive(6, 6 %), moderate positive (80, 80 %)and weakly positive(14, 14 %), it didn’t not correlate well with the tube method for detecting biofilm formation in E. coli. The rates of antibiotic resistance of biofilm producingE. coliwere found to be 100 % for chloramphenicol and amoxyclav (amoxicillin and clavulanic acid),86% for gentamicin and cefotaxime,84% for ceftazidime,83% for cotrimoxazole and piperacillin/tazobactam,75% for tetracycline and70% for amikacin.Conclusions: This study reveals the prevalence and antimicrobial susceptibility pattern of biofilm and non-biofilm producing uropathogenic E. coli strains.

  14. Influence of temporal aspects and age-correlations on the process of opinion formation based on Polish contact survey

    CERN Document Server

    Grabowski, Andrzej

    2016-01-01

    On the basis of the experimental data concerning interactions between humans the process of Ising-based model of opinion formation in a social network was investigated. In the paper the data concerning human social activity, i.e. frequency and duration time of interpersonal interactions as well as age correlations - homophily are presented in comparison to base line homogeneous, static and uniform mixing. It is known from previous studies that number of contact and average age of nearest neighbors are highly correlated with age of an individual. Such real, assortative patterns usually speed up processes (like epidemic spread) on the networks, but here it only plays a role for small social temperature values (by reducing `freezing by heating' effect). A real structure of contacts affects processes in many various studies in different way, however here it causes stronger (dynamic) and smoother (durations) susceptibility on external field. Moreover, our research shows that the cross interactions between contact ...

  15. Direct observation of electric field induced pattern formation and particle aggregation in ferrofluids

    International Nuclear Information System (INIS)

    Ferrofluids typically respond to magnetic fields and can be manipulated by external magnetic fields. Here, we report on formation of visually observable patterns in a diluted low-polarity ferrofluid exposed to external electric fields. This presents a specific type of ferrofluid structure driven by a combined effect of electrohydrodynamics and electrical body forces. The free charge and permittivity variation are considered to play a key role in the observed phenomenon. The corresponding changes in the ferrofluid structure have been found at nanoscale as well. By small-angle neutron scattering (SANS), we show that the magnetic nanoparticles aggregate in direct current (dc) electric field with a strong dependence on the field intensity. The anisotropic aggregates preferably orient in the direction of the applied electric field. Conducting SANS experiments with alternating current (ac) electric fields of various frequencies, we found a critical frequency triggering the aggregation process. Our experimental study could open future applications of ferrofluids based on insulating liquids

  16. The non-equilibrium charge screening effects in diffusion-driven systems with pattern formation

    Science.gov (United States)

    Kuzovkov, V. N.; Kotomin, E. A.; de la Cruz, M. Olvera

    2011-07-01

    The effects of non-equilibrium charge screening in mixtures of oppositely charged interacting molecules on surfaces are analyzed in a closed system. The dynamics of charge screening and the strong deviation from the standard Debye-Hückel theory are demonstrated via a new formalism based on computing radial distribution functions suited for analyzing both short-range and long-range spacial ordering effects. At long distances the inhomogeneous molecular distribution is limited by diffusion, whereas at short distances (of the order of several coordination spheres) by a balance of short-range (Lennard-Jones) and long-range (Coulomb) interactions. The non-equilibrium charge screening effects in transient pattern formation are further quantified. It is demonstrated that the use of screened potentials, in the spirit of the Debye-Hückel theory, leads to qualitatively incorrect results.

  17. Pattern formation of a thin film is characteristically sensitive to chemical stimuli

    International Nuclear Information System (INIS)

    The surface structure of a soy milk skin, as a simple artificial film, was found to be characteristically sensitive to chemical stimuli. The surface structure of the film was imaged by AFM and the shape and size of concavities on the film were analyzed to characterize the chemical response. This characteristic pattern formation of the soy milk skin is discussed in relation to the surface aggregation, electronic charge and solubility of soy protein molecules around the air/water interface. We believe that the investigation of such an artificial film prepared under nonequilibrium conditions could lead to the creation of a novel artificial film that can variously form the spatial structure to the chemical environment

  18. A reaction diffusion model of pattern formation in clustering of adatoms on silicon surfaces

    Directory of Open Access Journals (Sweden)

    Trilochan Bagarti

    2012-12-01

    Full Text Available We study a reaction diffusion model which describes the formation of patterns on surfaces having defects. Through this model, the primary goal is to study the growth process of Ge on Si surface. We consider a two species reaction diffusion process where the reacting species are assumed to diffuse on the two dimensional surface with first order interconversion reaction occuring at various defect sites which we call reaction centers. Two models of defects, namely a ring defect and a point defect are considered separately. As reaction centers are assumed to be strongly localized in space, the proposed reaction-diffusion model is found to be exactly solvable. We use Green's function method to study the dynamics of reaction diffusion processes. Further we explore this model through Monte Carlo (MC simulations to study the growth processes in the presence of a large number of defects. The first passage time statistics has been studied numerically.

  19. From pattern formation to material computation multi-agent modelling of physarum polycephalum

    CERN Document Server

    Jones, Jeff

    2015-01-01

    This book addresses topics of mobile multi-agent systems, pattern formation, biological modelling, artificial life, unconventional computation, and robotics. The behaviour of a simple organism which is capable of remarkable biological and computational feats that seem to transcend its simple component parts is examined and modelled. In this book the following question is asked: How can something as simple as Physarum polycephalum - a giant amoeboid single-celled organism which does not possess any neural tissue, fixed skeleton or organised musculature - can approximate complex computational behaviour during its foraging, growth and adaptation of its amorphous body plan, and with such limited resources? To answer this question the same apparent limitations as faced by the organism are applied: using only simple components with local interactions. A synthesis approach is adopted and a mobile multi-agent system with very simple individual behaviours is employed. It is shown their interactions yield emergent beha...

  20. Direct observation of electric field induced pattern formation and particle aggregation in ferrofluids

    Science.gov (United States)

    Rajnak, Michal; Petrenko, Viktor I.; Avdeev, Mikhail V.; Ivankov, Olexandr I.; Feoktystov, Artem; Dolnik, Bystrik; Kurimsky, Juraj; Kopcansky, Peter; Timko, Milan

    2015-08-01

    Ferrofluids typically respond to magnetic fields and can be manipulated by external magnetic fields. Here, we report on formation of visually observable patterns in a diluted low-polarity ferrofluid exposed to external electric fields. This presents a specific type of ferrofluid structure driven by a combined effect of electrohydrodynamics and electrical body forces. The free charge and permittivity variation are considered to play a key role in the observed phenomenon. The corresponding changes in the ferrofluid structure have been found at nanoscale as well. By small-angle neutron scattering (SANS), we show that the magnetic nanoparticles aggregate in direct current (dc) electric field with a strong dependence on the field intensity. The anisotropic aggregates preferably orient in the direction of the applied electric field. Conducting SANS experiments with alternating current (ac) electric fields of various frequencies, we found a critical frequency triggering the aggregation process. Our experimental study could open future applications of ferrofluids based on insulating liquids.

  1. Direct observation of electric field induced pattern formation and particle aggregation in ferrofluids

    Energy Technology Data Exchange (ETDEWEB)

    Rajnak, Michal; Kopcansky, Peter; Timko, Milan [Institute of Experimental Physics SAS, Watsonova 47, 04001 Košice (Slovakia); Petrenko, Viktor I. [Joint Institute for Nuclear Research, Joliot-Curie 6, 141980 Dubna, Moscow Region (Russian Federation); Kyiv Taras Shevchenko National University, Volodymyrska Street 64, Kyiv 01033 (Ukraine); Avdeev, Mikhail V. [Joint Institute for Nuclear Research, Joliot-Curie 6, 141980 Dubna, Moscow Region (Russian Federation); Ivankov, Olexandr I. [Joint Institute for Nuclear Research, Joliot-Curie 6, 141980 Dubna, Moscow Region (Russian Federation); Kyiv Taras Shevchenko National University, Volodymyrska Street 64, Kyiv 01033 (Ukraine); Moscow Institute of Physics and Technology, Institutskiy per. 9, Dolgoprudniy 141700 (Russian Federation); Feoktystov, Artem [Jülich Centre for Neutron Science (JCNS) at Heinz Maier-Leibnitz Zentrum (MLZ), Forschungszentrum Jülich GmbH, Lichtenbergstr. 1, 85747 Garching (Germany); Dolnik, Bystrik; Kurimsky, Juraj [Faculty of Electrical Engineering and Informatics, Technical University of Košice, Letná 9, 04200 Košice (Slovakia)

    2015-08-17

    Ferrofluids typically respond to magnetic fields and can be manipulated by external magnetic fields. Here, we report on formation of visually observable patterns in a diluted low-polarity ferrofluid exposed to external electric fields. This presents a specific type of ferrofluid structure driven by a combined effect of electrohydrodynamics and electrical body forces. The free charge and permittivity variation are considered to play a key role in the observed phenomenon. The corresponding changes in the ferrofluid structure have been found at nanoscale as well. By small-angle neutron scattering (SANS), we show that the magnetic nanoparticles aggregate in direct current (dc) electric field with a strong dependence on the field intensity. The anisotropic aggregates preferably orient in the direction of the applied electric field. Conducting SANS experiments with alternating current (ac) electric fields of various frequencies, we found a critical frequency triggering the aggregation process. Our experimental study could open future applications of ferrofluids based on insulating liquids.

  2. The Fokker-Planck law of diffusion and pattern formation in heterogeneous environments.

    Science.gov (United States)

    Bengfort, Michael; Malchow, Horst; Hilker, Frank M

    2016-09-01

    We analyze the influence of spatially inhomogeneous diffusion on several common ecological problems. Diffusion is modeled with Fick's law and the Fokker-Planck law of diffusion. We discuss the differences between the two formalisms and when to use either the one or the other. In doing so, we start with a pure diffusion equation, then turn to a reaction-diffusion system with one logistically growing component which invades the spatial domain. We also look at systems of two reacting components, namely a trimolecular oscillating chemical model system and an excitable predator-prey model. Contrary to Fickian diffusion, spatial inhomogeneities promote spatial and spatiotemporal pattern formation in case of Fokker-Planck diffusion. PMID:26803768

  3. Delay-driven pattern formation in a reaction-diffusion predator-prey model incorporating a prey refuge

    Science.gov (United States)

    Lian, Xinze; Wang, Hailing; Wang, Weiming

    2013-04-01

    In this paper, we consider a diffusive predation model with a delay effect, which is based on a modified version of the Leslie-Gower scheme incorporating a prey refuge. We mainly investigate the effects of time delay on the stability of the homogeneous state point and the formation of spatial patterns. We give the conditions for diffusion-driven and delay-diffusion-driven instability in detail. Furthermore, we illustrate the spatial patterns via numerical simulations, which show that the model dynamics exhibits a delay and diffusion controlled formation growth not only of spots, stripes and holes, but also of self-replicating spiral patterns. The results indicate that the delay plays an important role in the pattern selection. This may enrich the pattern dynamics for a delay diffusive model.

  4. Delay-driven pattern formation in a reaction–diffusion predator–prey model incorporating a prey refuge

    International Nuclear Information System (INIS)

    In this paper, we consider a diffusive predation model with a delay effect, which is based on a modified version of the Leslie–Gower scheme incorporating a prey refuge. We mainly investigate the effects of time delay on the stability of the homogeneous state point and the formation of spatial patterns. We give the conditions for diffusion-driven and delay–diffusion-driven instability in detail. Furthermore, we illustrate the spatial patterns via numerical simulations, which show that the model dynamics exhibits a delay and diffusion controlled formation growth not only of spots, stripes and holes, but also of self-replicating spiral patterns. The results indicate that the delay plays an important role in the pattern selection. This may enrich the pattern dynamics for a delay diffusive model. (paper)

  5. Mathematics and biology: a Kantian view on the history of pattern formation theory.

    Science.gov (United States)

    Roth, Siegfried

    2011-12-01

    Driesch's statement, made around 1900, that the physics and chemistry of his day were unable to explain self-regulation during embryogenesis was correct and could be extended until the year 1972. The emergence of theories of self-organisation required progress in several areas including chemistry, physics, computing and cybernetics. Two parallel lines of development can be distinguished which both culminated in the early 1970s. Firstly, physicochemical theories of self-organisation arose from theoretical (Lotka 1910-1920) and experimental work (Bray 1920; Belousov 1951) on chemical oscillations. However, this research area gained broader acceptance only after thermodynamics was extended to systems far from equilibrium (1922-1967) and the mechanism of the prime example for a chemical oscillator, the Belousov-Zhabotinski reaction, was deciphered in the early 1970s. Secondly, biological theories of self-organisation were rooted in the intellectual environment of artificial intelligence and cybernetics. Turing wrote his The chemical basis of morphogenesis (1952) after working on the construction of one of the first electronic computers. Likewise, Gierer and Meinhardt's theory of local activation and lateral inhibition (1972) was influenced by ideas from cybernetics. The Gierer-Meinhardt theory provided an explanation for the first time of both spontaneous formation of spatial order and of self-regulation that proved to be extremely successful in elucidating a wide range of patterning processes. With the advent of developmental genetics in the 1980s, detailed molecular and functional data became available for complex developmental processes, allowing a new generation of data-driven theoretical approaches. Three examples of such approaches will be discussed. The successes and limitations of mathematical pattern formation theory throughout its history suggest a picture of the organism, which has structural similarity to views of the organic world held by the philosopher

  6. Nanoscale pattern formation at surfaces under ion-beam sputtering: A perspective from continuum models

    International Nuclear Information System (INIS)

    Although reports on surface nanostructuring of solid targets by low to medium energy ion irradiation date back to the 1960s, only with the advent of high resolution tools for surface/interface characterization has the high potential of this procedure been recognized as a method for efficient production of surface patterns. Such morphologies are made up of periodic arrangements of nanometric sized features, like ripples and dots, with interest for technological applications due to their electronic, magnetic, and optical properties. Thus, roughly for the last ten years large efforts have been directed towards harnessing this nanofabrication technique. However, and particularly in view of recent experimental developments, we can say that the basic mechanisms controlling these pattern formation processes remain poorly understood. The lack of nanostructuring at low angles of incidence on some pure monoelemental targets, the role of impurities in the surface dynamics and other recent observations are challenging the classic view on the phenomenon as the mere interplay between the curvature dependence of the sputtering yield and surface diffusion. We review the main attempts at a theoretical (continuum) description of these systems, with emphasis on recent developments. Strong hints already exist that the nature of the morphological instability has to be rethought as originating in the material flow that is induced by the ion beam.

  7. Network inference of AP pattern formation system in D.melanogaster by structural equation modeling

    International Nuclear Information System (INIS)

    Within the field of systems biology, revealing the control systems functioning during embryogenesis is an important task. To clarify the mechanisms controlling sequential events, the relationships between various factors and the expression of specific genes should be determined. In this study, we applied a method based on Structural Equation Modeling (SEM), combined with factor analysis. SEM can include the latent variables within the constructed model and infer the relationships among the latent and observed variables, as a network model. We improved a method for the construction of initial models for the SEM calculation, and applied our approach to estimate the regulatory network for Antero-Posterior (AP) pattern formation in D. melanogaster embryogenesis. In this new approach, we combined cross-correlation and partial correlation to summarize the temporal information and to extract the direct interactions from the gene expression profiles. In the inferred model, 18 transcription factor genes were regulated by not only the expression of other genes, but also the estimated factors. Since each factor regulated the same type of genes, these factors were considered to be involved in maternal effects or spatial morphogen distributions. The interpretation of the inferred network model allowed us to reveal the regulatory mechanism for the patterning along the head to tail axis in D. melanogaster

  8. The effect of brine salinity on fill fraction and formation pattern of methane hydrates in sandstone

    Energy Technology Data Exchange (ETDEWEB)

    Husebo, J.; Ersland, G.; Kvamme, B.; Graue, A. [Bergen Univ., Bergen (Norway). Dept. of Physics and Technology; Stevens, J. [ConocoPhillips, Bartlesville, OK (United States). Bartlesville Technology Center

    2008-07-01

    Methane hydrates were synthesized in sandstone cores partially saturated with brine at different salinity levels. The aim of the study was to investigate the effect of salinity on hydrate filling fractions. Magnetic resonance imaging (MRI) was used to study the in-situ formation pattern of the hydrates. Results of the experimental study showed that salinity levels lower than sea water composition did not have a significant impact on the fill fractions of methane hydrates in porous media. However, when salinity levels higher than sea water were used, a significant drop in the hydrate's fill fraction was noted. Results suggested that methane hydrate fill fraction is dominated by the total brine salinity as opposed to the brine distribution within the sediment core. The MRI analysis showed that hydrate growth patterns are influenced by the initial brine distribution rather than brine salinity levels. It was concluded that the available methane in hydrate reserves can be predicted by identifying the salinity levels of the adjacent aqueous zone. 9 refs., 7 figs.

  9. Formation of High Aspect Ratio TiO2 Nano tube Arrays by Anodization of Ti Foil in Organic Solution

    International Nuclear Information System (INIS)

    Titanium oxide (TiO2) nano tubes were successfully formed by anodization of pure titanium foil in a standard two-electrode bath consisting of ethylene glycol solution containing 5 wt % NH4F. The pH of the solution was ∼7 and the anodization voltage was 60 V. It was observed that such anodization condition results in ordered arrays of TiO2 nano tubes with smooth surface and a very high aspect ratio. It was observed that a minimum of 1 wt % water addition was required to form well ordered TiO2 nano tubes with length of approximately 18.5 μm. As-anodized sample, the self-organized TiO2 nano tubes have amorphous structure and annealing at 500 degree Celsius of the nano tubes promote formation of anatase and rutile phase. Photo catalytic activity of well ordered TiO2 nano tubes with two different lengths was evaluated by measuring the degradation of methyl orange (MO). The elaboration of this observation is described in detail in this paper. (author)

  10. Modeling the PbI2 formation in perovskite solar cells using XRD/XPS patterns

    Science.gov (United States)

    Sohrabpoor, Hamed; Elyasi, Majid; Aldosari, Marouf; Gorji, Nima E.

    2016-09-01

    The impact of prolonged irradiation and air humidity on the stability of perovskite solar cells is modeled using X-ray diffraction and X-ray photoelectron spectroscopy patterns reported in the literature. Light or air-moisture causes the formation of a thin PbI2 or oxide defective layers (in nanoscale) at the interface of perovskite/hole-transport-layer or at the junction with metallic back contact. This thin layer blocks the carrier transport/passivation at the interfaces and cause degradation of device parameters. Variation in thickness of defective layers, changes the XRD and XPS peaks. This allows detection and estimation of the type, crystallinity and thickness of the defective layer. A simple model is developed here to extract the thickness of such thin defective layers formed in nanometer scale at the back region of several perovskite devices. Based on this information, corrected energy band diagram of every device before and after degradation/aging is drawn and discussed in order to obtain insight into the carrier transport and charge collection at the barrier region. In addition, graphene contacted perovskite devices are investigated showing that honey-comb network of graphene contact reduces the effect of aging leading to formation of a thinner defective layer at the perovskite surface compared to perovskite devices with conventional inorganic contacts i.e. Au, Al.

  11. Formation of white-eye pattern with microdischarge in an air dielectric barrier discharge system

    OpenAIRE

    He, Yafeng; Dong, Lifang; Liu, Weili; Wang, Hongfang; Zhao, Zengchao; FAN, WEILI

    2011-01-01

    We report on the first observation of white-eye pattern in an air dielectric barrier discharge. The patterned discharges undergo a development as following: random spots - quasihexagonal pattern - hexagonal pattern (type I) - hexagonal pattern (type II) - white-eye pattern - chaos as the voltage is increased. The spatiotemporal characteristics of patterned discharges are investigated by using an optical method. Results show that the two discharge modes, uniform mode and filamentary mode, are ...

  12. X-ray photoemission spectromicroscopy of titanium silicide formation in patterned microstructures

    Energy Technology Data Exchange (ETDEWEB)

    Singh, S.; Solak, H.; Cerrina, F. [Univ. of Wisconsin-Madison, Stoughton, WI (United States)] [and others

    1997-04-01

    Titanium silicide has the lowest resistivity of all the refractory metal silicides and has good thermal stability as well as excellent compatibility with Al metallization. It is used as an intermediate buffer layer between W vias and the Si substrate to provide good electrical contact in ULSI technology, whose submicron patterned features form the basis of the integrated circuits of today and tomorrow, in the self aligned silicide (salicide) formation process. TiSi{sub 2} exists in two phases: a metastable C49 base-centered orthorhombic phase with specific resistivity of 60-90 {mu}{Omega}-cm that is formed at a lower temperature (formation anneal) and the stable 12-15 {mu}{Omega}-cm resistivity face-centered orthorhombic C54 phase into which C49 is transformed with a higher temperature (conversion anneal) step. C54 is clearly the target for low resistivity VLSI interconnects. However, it has been observed that when dimensions shrink below 1/mic (or when the Ti thickness drops below several hundred angstroms), the transformation of C49 into C54 is inhibited and agglomeration often occurs in fine lines at high temperatures. This results in a rise in resistivity due to incomplete transformation to C54 and because of discontinuities in the interconnect line resulting from agglomeration. Spectromicroscopy is an appropriate tool to study the evolution of the TiSi2 formation process because of its high resolution chemical imaging ability which can detect bonding changes even in the absence of changes in the relative amounts of species and because of the capability of studying thick {open_quotes}as is{close_quotes} industrial samples.

  13. A generic model of pattern formation in Mississippi Valley-Type deposits based on analytical findings

    Science.gov (United States)

    Kelka, Ulrich; Veveakis, Manolis; Beaudoin, Nicolas; Poulet, Thomas; Koehn, Daniel; Regenauer-Lieb, Klaus; Chung, Peter; Berndt, Jasper

    2016-04-01

    Rhythmically banded dolomites (zebra dolomite) are found worldwide, and are frequently associated with mineralization of the Mississippi Valley-Type (MVT). These rocks consist of dark fine grained and impurity-rich layers alternating with light coarse grained and virtually impurity-free layers. The texture of the light layers is similar to the one of tectonic syntaxial veins where crystals grow towards a median line. We present petrographic and chemical analysis of zebra dolomite samples from the San Vicente mine, Central Peru. The applied methods are petrographic microscopy, SEM, EBSD, EMP and LA-ICP-MS. The findings influence the development of a generic model of pattern formation. We found the density and the distribution of second-phase material to be one striking feature. The impurities are accumulated in the dark layers, which show an even higher density of second-phase material than the surrounding impurity-rich dolomite. With CL, it was possible to detect a luminescent structure in the center of the light bands which seems to be present independent of the thickness and spacing of the respective layers. This structure was analysed in more detail with EMP. We further found that the dolomite crystals in the dark and light layers are chemically similar but show a variation in some trace elements. Based on the analytical findings, we put forward a mathematical model of zebra dolomite formation based on Cnoidal waves. We believe that the light coarse grained layers represent hydromechanical instabilities arising during the diagenetic compaction of a fluid saturated, impurity-rich dolomite. Our approach is based on the extension of the classical compaction bands theory to a viscose, non-linear rheology. In the model, the spacing between two light coarse grained layers is linked to the compaction length during the pattern formation. With the formulation of a 1D steady-state solution we can relate the genesis of the structure to physical parameter, such as

  14. Aspects régionaux de la formation de la famille et de l'illégitimité en Autriche

    OpenAIRE

    France Prioux

    1993-01-01

    Prioux (France). - Aspects of Family Formation and Illegitimacy in the Regions of Austria In Austria, the frequency of extra-marital birth has traditionally been high, but large local and regional variations have persisted to the present day. However, when all pre-mari- tal conceptions are taken into account this variation is somewhat reduced, and two different models of family formation are found. In the Eastern parts of Austria, in Lower Austria, and especially in the Burgenland the rule is...

  15. Formation of white-eye pattern with microdischarge in an air dielectric barrier discharge system

    CERN Document Server

    He, Yafeng; Liu, Weili; Wang, Hongfang; Zhao, Zengchao; Fan, Weili

    2011-01-01

    We report on the first observation of white-eye pattern in an air dielectric barrier discharge. The patterned discharges undergo a development as following: random spots - quasihexagonal pattern - hexagonal pattern (type I) - hexagonal pattern (type II) - white-eye pattern - chaos as the voltage is increased. The spatiotemporal characteristics of patterned discharges are investigated by using an optical method. Results show that the two discharge modes, uniform mode and filamentary mode, are actually two different spatial presentations of the same origin: the microdischarge. From the viewpoint of pattern dynamics, the white-eye pattern results from a 3-wave resonance interaction.

  16. From dynamic expression patterns to boundary formation in the presomitic mesoderm.

    Directory of Open Access Journals (Sweden)

    Hendrik B Tiedemann

    Full Text Available The segmentation of the vertebrate body is laid down during early embryogenesis. The formation of signaling gradients, the periodic expression of genes of the Notch-, Fgf- and Wnt-pathways and their interplay in the unsegmented presomitic mesoderm (PSM precedes the rhythmic budding of nascent somites at its anterior end, which later develops into epithelialized structures, the somites. Although many in silico models describing partial aspects of somitogenesis already exist, simulations of a complete causal chain from gene expression in the growth zone via the interaction of multiple cells to segmentation are rare. Here, we present an enhanced gene regulatory network (GRN for mice in a simulation program that models the growing PSM by many virtual cells and integrates WNT3A and FGF8 gradient formation, periodic gene expression and Delta/Notch signaling. Assuming Hes7 as core of the somitogenesis clock and LFNG as modulator, we postulate a negative feedback of HES7 on Dll1 leading to an oscillating Dll1 expression as seen in vivo. Furthermore, we are able to simulate the experimentally observed wave of activated NOTCH (NICD as a result of the interactions in the GRN. We esteem our model as robust for a wide range of parameter values with the Hes7 mRNA and protein decays exerting a strong influence on the core oscillator. Moreover, our model predicts interference between Hes1 and HES7 oscillators when their intrinsic frequencies differ. In conclusion, we have built a comprehensive model of somitogenesis with HES7 as core oscillator that is able to reproduce many experimentally observed data in mice.

  17. Charge effects and nanoparticle pattern formation in electrohydrodynamic NanoDrip printing of colloids.

    Science.gov (United States)

    Richner, Patrizia; Kress, Stephan J P; Norris, David J; Poulikakos, Dimos

    2016-03-21

    Advancing open atmosphere printing technologies to produce features in the nanoscale range has important and broad applications ranging from electronics to photonics, plasmonics and biology. Recently an electrohydrodynamic printing regime has been demonstrated in a rapid dripping mode (termed NanoDrip), where the ejected colloidal droplets from nozzles of diameters of O (1 μm) can controllably reach sizes an order of magnitude smaller than the nozzle and can generate planar and out-of-plane structures of similar sizes. Despite the demonstrated capabilities, our fundamental understanding of important aspects of the physics of NanoDrip printing needs further improvement. Here we address the topics of charge content and transport in NanoDrip printing. We employ quantum dot and gold nanoparticle dispersions in combination with a specially designed, auxiliary, asymmetric electric field, targeting the understanding of charge locality (particles vs. solvent) and particle distribution in the deposits as indicated by the dried nanoparticle patterns (footprints) on the substrate. We show that droplets of alternating charge can be spatially separated when applying an ac field to the nozzle. The nanoparticles within a droplet are distributed asymmetrically under the influence of the auxiliary lateral electric field, indicating that they are the main carriers. We also show that the ligand length of the nanoparticles in the colloid affects their mobility after deposition (in the sessile droplet state). PMID:26928324

  18. Predicting the distribution of spiral waves from cell properties in a developmental-path model of Dictyostelium pattern formation.

    OpenAIRE

    Daniel Geberth; Marc-Thorsten Hütt

    2009-01-01

    The slime mold Dictyostelium discoideum is one of the model systems of biological pattern formation. One of the most successful answers to the challenge of establishing a spiral wave pattern in a colony of homogeneously distributed D. discoideum cells has been the suggestion of a developmental path the cells follow (Lauzeral and coworkers). This is a well-defined change in properties each cell undergoes on a longer time scale than the typical dynamics of the cell. Here we show that this conce...

  19. On the role of vegetation in the formation of river anabranching patterns

    Science.gov (United States)

    Crouzy, B.; D'Odorico, P.; Wütrich, D.; Perona, P.

    2012-04-01

    Part of studies on the couplings between the evolution of riparian vegetation and the river morphodynamics, we investigate the effect of spatial interactions between vegetation located at different positions within the channel. This work generalizes the experimental and theoretical results by Perona et al. and by Crouzy and Perona (both Advances in Water Resources, in Press) on colonization of riverbars by seedlings or large woody debris by relaxing the hypothesis made in those two works of the biomass growth and uprooting being independent on the presence of neighboring plants. While the hypothesis of independent vegetation growth and uprooting is justified for sparse vegetation cover or young seedlings, it fails as soon as the canopy significantly disturbs the flow or changes the sediment stability. Then, flow-mediated interactions between riparian vegetation located at different positions within the channel can be observed. Those interactions are either constructive or destructive. For example, a region favorable to the development of biomass appears on the lee side of a vegetated obstacle (with bleed flow) due to increased deposition of seeds and sediment (Schnauder and Moggridge, 2008) while conversely scouring can be increased laterally due to obstacle-induced flow diversion (Roulund et al., 2005; Melville and Sutherland, 1988; Zong and Nepf, 2008). We focus on the role of vegetation in the formation of the regular vegetated ridge patterns found in ephemeral rivers (see for example the work by Tooth and Nanson, 2004 on anabranching patterns) or as a succession of swales and ridges on the inside of meander bends (scroll bars). From the analysis of aerial images, we obtain the characteristic length scale of the patterns. We show how in the limit where the hydrological (interarrival time of floods) and the biological (germination and growth rates) timescales are comparable the combination between both positive and negative feedbacks between vegetation located at

  20. Charge effects and nanoparticle pattern formation in electrohydrodynamic NanoDrip printing of colloids

    Science.gov (United States)

    Richner, Patrizia; Kress, Stephan J. P.; Norris, David J.; Poulikakos, Dimos

    2016-03-01

    Advancing open atmosphere printing technologies to produce features in the nanoscale range has important and broad applications ranging from electronics to photonics, plasmonics and biology. Recently an electrohydrodynamic printing regime has been demonstrated in a rapid dripping mode (termed NanoDrip), where the ejected colloidal droplets from nozzles of diameters of O (1 μm) can controllably reach sizes an order of magnitude smaller than the nozzle and can generate planar and out-of-plane structures of similar sizes. Despite the demonstrated capabilities, our fundamental understanding of important aspects of the physics of NanoDrip printing needs further improvement. Here we address the topics of charge content and transport in NanoDrip printing. We employ quantum dot and gold nanoparticle dispersions in combination with a specially designed, auxiliary, asymmetric electric field, targeting the understanding of charge locality (particles vs. solvent) and particle distribution in the deposits as indicated by the dried nanoparticle patterns (footprints) on the substrate. We show that droplets of alternating charge can be spatially separated when applying an ac field to the nozzle. The nanoparticles within a droplet are distributed asymmetrically under the influence of the auxiliary lateral electric field, indicating that they are the main carriers. We also show that the ligand length of the nanoparticles in the colloid affects their mobility after deposition (in the sessile droplet state).Advancing open atmosphere printing technologies to produce features in the nanoscale range has important and broad applications ranging from electronics to photonics, plasmonics and biology. Recently an electrohydrodynamic printing regime has been demonstrated in a rapid dripping mode (termed NanoDrip), where the ejected colloidal droplets from nozzles of diameters of O (1 μm) can controllably reach sizes an order of magnitude smaller than the nozzle and can generate planar and

  1. Pattern formation during healing of fluid-filled cracks: an analog experiment

    International Nuclear Information System (INIS)

    The formation and subsequent healing of cracks and crack networks may control such diverse phenomena as the strengthening of fault zones between earthquakes, fluid migrations in the Earth's crust, or the transport of radioactive materials in nuclear waste disposal. An intriguing pattern-forming process can develop during healing of fluid-filled cracks, where pockets of fluid remain permanently trapped in the solid as the crack tip is displaced driven by surface energy. Here, we present the results of analog experiments in which a liquid was injected into a colloidal inorganic gel to obtain penny-shaped cracks that were subsequently allowed to close and heal under the driving effect of interfacial tension. Depending on the properties of the gel and the injected liquid, two modes of healing were obtained. In the first mode, the crack healed completely through a continuous process. The second mode of healing was discontinuous and was characterized by a 'zipper-like' closure of a front that moved along the crack perimeter, trapping fluid that may eventually form inclusions trapped in the solid. This instability occurred only when the velocity of the crack tip decreased to zero. Our experiments provide a cheap and simple analog to reveal how aligned arrays of fluid inclusions may be captured along preexisting fracture planes and how small amounts of fluids can be permanently trapped in solids, modifying irreversibly their material properties.

  2. Polar pattern formation in driven filament systems requires non-binary particle collisions

    Science.gov (United States)

    Suzuki, Ryo; Weber, Christoph A.; Frey, Erwin; Bausch, Andreas R.

    2015-10-01

    From the self-organization of the cytoskeleton to the synchronous motion of bird flocks, living matter has the extraordinary ability to behave in a concerted manner. The Boltzmann equation for self-propelled particles is frequently used in silico to link a system’s meso- or macroscopic behaviour to the microscopic dynamics of its constituents. But so far such studies have relied on an assumption of simplified binary collisions owing to a lack of experimental data suggesting otherwise. We report here experimentally determined binary-collision statistics by studying a recently introduced molecular system, the high-density actomyosin motility assay. We demonstrate that the alignment induced by binary collisions is too weak to account for the observed ordering transition. The transition density for polar pattern formation decreases quadratically with filament length, indicating that multi-filament collisions drive the observed ordering phenomenon and that a gas-like picture cannot explain the transition of the system to polar order. Our findings demonstrate that the unique properties of biological active-matter systems require a description that goes well beyond that developed in the framework of kinetic theories.

  3. Pattern Formation in Swarming Spacecrafts using Tersoff-Brenner Potential Field

    Directory of Open Access Journals (Sweden)

    Zhifeng Zeng

    2013-05-01

    Full Text Available We present a distributed control strategy that lets a swarm of spacecrafts autonomously form a lattice in orbit around a planet. The system, based on the artificial potential field approach, proposes a novel way to divide the artificial field into two main terms: a global artificial potential field mainly based on the famous C-W equations that gathers the spacecrafts around a predefined meeting point, and a local term exploited the well-known Tersoff-Brenner potential that allows a spacecraft to place itself in the correct position relative to its closest neighbors. Moreover, in order to obtain convergence from all initial distributions of the spacecrafts, a dissipation term depended on the velocity of agent is introduced. The new methodology is demonstrated in the problem of forming a hexagon lattice, the structure unit of graphite. It is shown that a pattern formation can operate around a planet. By slightly changing the scenario our method can be easily applied to shape other configurations, such as a regular tetrahedron (with central point, the structure unit, etc.

  4. Dynamical pattern formation in a low-concentration magnetorheological fluid under two orthogonal sinusoidal fields

    Science.gov (United States)

    Yépez, L. D.; Carrillo, J. L.; Donado, F.; Sausedo-Solorio, J. M.; Miranda-Romagnoli, P.

    2016-06-01

    The dynamical pattern formation of clusters of magnetic particles in a low-concentration magnetorheological fluid, under the influence of a superposition of two perpendicular sinusoidal fields, is studied experimentally. By varying the frequency and phase shift of the perpendicular fields, this configuration enables us to experimentally analyze a wide range of field configurations, including the case of a pure rotating field and the case of an oscillating unidirectional field. The fields are applied parallel to the horizontal plane where the fluid lies or in the vertical plane. For fields applied in the horizontal plane, we observed that, when the ratio of the frequencies increases, the average cluster size exhibits a kind of periodic resonances. When the phase shift between the fields is varied, the average chain length reaches maximal values for the cases of the rotating field and the unidirectional case. We analyze and discuss these results in terms of a weighted average of the time-dependent Mason number. In the case of a rotating field on the vertical plane, we also observe that the competition between the magnetic and the viscous forces determines the average cluster size. We show that this configuration generates a series of physically meaningful self-organization of clusters and transport phenomena.

  5. Peptide Induced Crystallization of Calcium Carbonate on Wrinkle Patterned Substrate: Implications for Chitin Formation in Molluscs

    Directory of Open Access Journals (Sweden)

    Ingrid M. Weiss

    2013-06-01

    Full Text Available We here present the nucleation and growth of calcium carbonate under the influence of synthetic peptides on topographically patterned poly(dimethylsiloxane (PDMS substrates, which have a controlled density of defects between the wrinkles. Experiments with two lysine-rich peptides derived from the extracellular conserved domain E22 of the mollusc chitin synthase Ar-CS1, AKKKKKAS (AS8 and EEKKKKKES (ES9 on these substrates showed their influence on the calcium carbonate morphology. A transition from polycrystalline composites to single crystalline phases was achieved with the peptide AS8 by changing the pH of the buffer solution. We analyzed three different pH values as previous experiments showed that E22 interacts with aragonite biominerals more strongly at pH 7.75 than at pH 9.0. At any given pH, crystals appeared in characteristic morphologies only on wrinkled substrates, and did not occur on the flat, wrinkle-free PDMS substrate. These results suggest that these wrinkled substrates could be useful for controlling the morphologies of other mineral/peptide and mineral/protein composites. In nature, these templates are formed enzymatically by glycosyltransferases containing pH-sensitive epitopes, similar to the peptides investigated here. Our in vitro test systems may be useful to gain understanding of the formation of distinct 3D morphologies in mollusc shells in response to local pH shifts during the mineralization of organic templates.

  6. Looking at the origin of phenotypic variation from pattern formation gene networks

    Indian Academy of Sciences (India)

    Isaac Salazar-Ciudad

    2009-10-01

    This article critically reviews some widespread views about the overall functioning of development. Special attention is devoted to views in developmental genetics about the superstructure of developmental gene networks. According to these views gene networks are hierarchic and multilayered. The highest layers partition the embryo in large coarse areas and control downstream genes that subsequently subdivide the embryo into smaller and smaller areas. These views are criticized on the bases of developmental and evolutionary arguments. First, these views, although detailed at the level of gene identities, do not incorporate morphogenetic mechanisms nor do they try to explain how morphology changes during development. Often, they assume that morphogenetic mechanisms are subordinate to cell signaling events. This is in contradiction to the evidence reviewed herein. Experimental evidence on pattern formation also contradicts the view that developmental gene networks are hierarchically multilayered and that their functioning is decodable from promoter analysis. Simple evolutionary arguments suggest that, indeed, developmental gene networks tend to be non-hierarchic. Re-use leads to extensive modularity in gene networks while developmental drift blurs this modularity. Evolutionary opportunism makes developmental gene networks very dependent on epigenetic factors.

  7. Biofilm formation over surface patterned with pico-liter oil micro-drop array

    Science.gov (United States)

    Jalali, Maryam; Sheng, Jian

    2015-11-01

    It has been suggested that biodegradation by microbes is an effective process in the cleansing of oil polluted marine environments. It has also been speculated that dispersants could further enhance processes amid no direct evidence. The studies in the relevant scales are severely hampered by lack of techniques to generate uniform micro-scale drops allowing in-situ monitoring of these processes. In this paper, we present a microfabrication technique allowing patterning microfluidic surfaces with arrays of micro oil drops. The array of oil drops was printed by micro transfer molding/printing with negative PDMS stamps. The printed micro-drops have dimensions ranging from 5 μm to 50 μm. Non-circular shapes, such as square and triangle, can also be printed and maintained for weeks. Atomic force microscopy is used to characterize the topology and interfacial structures of droplets. The results reveal that although the drop with different base shapes assumes dome like profile asymptotically, donut and top-hat shapes are also observed. Time evolution measurement elucidates that in the absences of inviscid mechanisms in comparison to a micro-liter drop, subtle interplays between interfacial forces and viscosity play crucial role in the shape of pico-liter drop. With the developed surfaces, the effects of oil drop sizes and interfacial structures on biofilm formation are studied and reported.

  8. PS-b-PDMS Block Copolymer Thin Film: Pattern Formation and Phase Behavior

    Science.gov (United States)

    Hsieh, I.-Fan; Cheng, Stephen Z. D.; Department of Polymer Science, The University of Akron Team

    2011-03-01

    Recently, block copolymer thin films attract great attention due to their potential applications in surface nano-lithography. In our work, PS- b -PDMS with cylinder morphology is chosen due to extremely large χ value between two blocks. Besides, PS- b -PDMS can be transformed into silicon oxide under UV/O3 exposure and a layer of silicon oxide with the self-assembled block copolymer patterns can be made. By utilizing the PGMEA as solvent, we can easily obtain sphere morphology in cylindrical composition block copolymer by preserved block copolymer solution morphology during film formation. Furthermore, in thermal annealing process, the phase behavior of the PS- b -PDMS thin film is strongly affects by molecular weight, film thickness and annealing temperature. In larger-molecular-weight PS- b -PDMS, we only observed spherical domains rearrangement and without morphology transition between sphere and cylinder due to high energy barrier, whereas, in the case of smaller-molecular-weight polymer, depending on the film thickness and annealing temperature, its thin film morphology transits between sphere and cylinder alternatively, which is similar to what we found in solvent annealing.

  9. Simple and non-toxic fabrication of poly(vinyl alcohol)-patterned polymer surface for the formation of cell patterns

    Science.gov (United States)

    Hwang, In-Tae; Jin, Yu-Ran; Oh, Min-Suk; Jung, Chan-Hee; Choi, Jae-Hak

    2014-10-01

    In this study, a facile and non-toxic method for the formation of cell-adhesive poly(vinyl alcohol) (PVA) patterns on the surface of a non-biological polystyrene substrate (NPS) is developed to control cellular micro-organization. PVA thin films spin-coated onto the NPS are selectively irradiated with 150 keV H+ ions through a pattern mask and developed with deionized water to form negative-type PVA patterns. Well-defined stripe patterns of PVA with a width of 100 μm are created on the NPS at a higher fluence than 5 × 1015 ions/cm2, and their surface chemical compositions are changed by ion irradiation without any significant morphological change. Based on the results of the protein adsorption test and in vitro cell culture, cancer cells are preferentially adhered and proliferated onto the more hydrophilic PVA regions of the PVA-patterned NPS, resulting in well-defined cell patterns.

  10. ORGANIZATIONAL ASPECTS OF TYPICAL PATTERNS OF CRIME MECHANISM IN THE SPHERE OF ILLEGAL WEAPON AND AMMUNITION TURNOVER

    Directory of Open Access Journals (Sweden)

    Ragulin I. Y.

    2015-11-01

    Full Text Available This article is important today because there is not enough attention in the contemporary law publications paid to the typical patterns of crime mechanism especially in the sphere of illegal weapon and ammunition turnover. Taking into account the opinions of such well-known forensic scientists as R.S. Belkin, V.D. Zelensky, G.M. Meretukov, M.V. Golovin, V.A. Obraztsov, J.G. Korukhov, V.Y. Koldin, O.V. Chelysheva, L.Y. Drapkin, V.N. Karagodin and others, the author comes to the conclusion that it’s necessary to develop typical patterns of crime mechanism for certain types of crime. The author has worked out some typical patterns of crime mechanism in the sphere of illegal weapon and ammunition turnover based upon major informative criminalistic elements, this particular article describes seven typical patterns of crime mechanism for the illegal storage, transportation, transfer, carry, purchase and sale, manufacture, repair or alteration, theft or extortion, careless storage or improper performance of duties on protection of weapon, its basic parts and ammunition. Each pattern is accompanied with the examples of judicial and investigative practice, followed by the necessary explanations and analysis of the activities of the subject of the investigation on the preparation, followup and final stages, which leads to the conclusion about the legitimacy of the proposed patterns

  11. Regulation of Pattern Formation and Gene Amplification During Drosophila Oogenesis by the miR-318 microRNA

    DEFF Research Database (Denmark)

    Ge, Wanzhong; Deng, Qiannan; Guo, Ting; Hong, Xin; Kugler, Jan-Michael; Yang, Xiaohang; Cohen, Stephen M

    2015-01-01

    Pattern formation during epithelial development requires the coordination of multiple signaling pathways. Here, we investigate the functions of an ovary-enriched miRNA, miR-318, in epithelial development during Drosophila oogenesis. miR-318 maternal loss-of-function mutants were female sterile and...

  12. Two tree-formation methods for fast pattern search using nearest-neighbour and nearest-centroid matching

    NARCIS (Netherlands)

    Schomaker, Lambertus; Mangalagiu, D.; Vuurpijl, Louis; Weinfeld, M.; Schomaker, Lambert; Vuurpijl, Louis

    2000-01-01

    This paper describes tree­based classification of character images, comparing two methods of tree formation and two methods of matching: nearest neighbor and nearest centroid. The first method, Preprocess Using Relative Distances (PURD) is a tree­based reorganization of a flat list of patterns, desi

  13. Analytical solutions of jam pattern formation on a ring for a class of optimal velocity traffic models

    DEFF Research Database (Denmark)

    Gaididei, Yuri Borisovich; Berkemer, Rainer; Caputo, Jean Guy;

    2009-01-01

    A follow-the-leader model of traffic flow on a closed loop is considered in the framework of the extended optimal velocity (OV) model where the driver reacts to both the following and the preceding car. Periodic wave train solutions that describe the formation of traffic congestion patterns are...

  14. Pattern formation of reaction-diffusion system having self-determined flow in the amoeboid organism of Physarum plasmodium

    CERN Document Server

    Yamada, H; Ito, M

    1998-01-01

    The amoeboid organism, the plasmodium of Physarum polycephalum, behaves on the basis of spatio-temporal pattern formation by local contraction-oscillators. This biological system can be regarded as a reaction-diffusion system which has spatial interaction by active flow of protoplasmic sol in the cell. Paying attention to the physiological evidence that the flow is determined by contraction pattern in the plasmodium, a reaction-diffusion system having self-determined flow arises. Such a coupling of reaction-diffusion-advection is a characteristic of the biological system, and is expected to relate with control mechanism of amoeboid behaviours. Hence, we have studied effects of the self-determined flow on pattern formation of simple reaction-diffusion systems. By weakly nonlinear analysis near a trivial solution, the envelope dynamics follows the complex Ginzburg-Landau type equation just after bifurcation occurs at finite wave number. The flow term affects the nonlinear term of the equation through the critic...

  15. Swarming and complex pattern formation in Paenibacillus vortex studied by imaging and tracking cells

    Directory of Open Access Journals (Sweden)

    Jacob Eshel

    2008-02-01

    Full Text Available Abstract Background Swarming motility allows microorganisms to move rapidly over surfaces. The Gram-positive bacterium Paenibacillus vortex exhibits advanced cooperative motility on agar plates resulting in intricate colonial patterns with geometries that are highly sensitive to the environment. The cellular mechanisms that underpin the complex multicellular organization of such a simple organism are not well understood. Results Swarming by P. vortex was studied by real-time light microscopy, by in situ scanning electron microscopy and by tracking the spread of antibiotic-resistant cells within antibiotic-sensitive colonies. When swarming, P. vortex was found to be peritrichously flagellated. Swarming by the curved cells of P. vortex occurred on an extremely wide range of media and agar concentrations (0.3 to 2.2% w/v. At high agar concentrations (> 1% w/v rotating colonies formed that could be detached from the main mass of cells by withdrawal of cells into the latter. On lower percentage agars, cells moved in an extended network composed of interconnected "snakes" with short-term collision avoidance and sensitivity to extracts from swarming cells. P. vortex formed single Petri dish-wide "supercolonies" with a colony-wide exchange of motile cells. Swarming cells were coupled by rapidly forming, reversible and non-rigid connections to form a loose raft, apparently connected via flagella. Inhibitors of swarming (p-Nitrophenylglycerol and Congo Red were identified. Mitomycin C was used to trigger filamentation without inhibiting growth or swarming; this facilitated dissection of the detail of swarming. Mitomycin C treatment resulted in malcoordinated swarming and abortive side branch formation and a strong tendency by a subpopulation of the cells to form minimal rotating aggregates of only a few cells. Conclusion P. vortex creates complex macroscopic colonies within which there is considerable reflux and movement and interaction of cells. Cell

  16. Kinetic trapping through coalescence and the formation of patterned Ag-Cu nanoparticles

    Science.gov (United States)

    Grammatikopoulos, Panagiotis; Kioseoglou, Joseph; Galea, Antony; Vernieres, Jerome; Benelmekki, Maria; Diaz, Rosa E.; Sowwan, Mukhles

    2016-05-01

    In recent years, due to its inherent flexibility, magnetron-sputtering has been widely used to synthesise bi-metallic nanoparticles (NPs) via subsequent inert-gas cooling and gas-phase condensation of the sputtered atomic vapour. Utilising two separate sputter targets allows for good control over composition. Simultaneously, it involves fast kinetics and non-equilibrium processes, which can trap the nascent NPs into metastable configurations. In this study, we observed such configurations in immiscible, bi-metallic Ag-Cu NPs by scanning transmission electron microscopy (S/TEM) and electron energy-loss spectroscopy (EELS), and noticed a marked difference in the shape of NPs belonging to Ag- and Cu-rich samples. We explained the formation of Janus or Ag@Cu core/shell metastable structures on the grounds of in-flight mixed NP coalescence. We utilised molecular dynamics (MD) and Monte Carlo (MC) computer simulations to demonstrate that such configurations cannot occur as a result of nanoalloy segregation. Instead, sintering at relatively low temperatures can give rise to metastable structures, which eventually can be stabilised by subsequent quenching. Furthermore, we compared the heteroepitaxial diffusivities along various surfaces of both Ag and Cu NPs, and emphasised the differences between the sintering mechanisms of Ag- and Cu-rich NP compositions: small Cu NPs deform as coherent objects on large Ag NPs, whereas small Ag NPs dissolve into large Cu NPs, with their atoms diffusing along specific directions. Taking advantage of this observation, we propose controlled NP coalescence as a method to engineer mixed NPs of a unique, patterned core@partial-shell structure, which we refer to as a ``glass-float'' (ukidama) structure.In recent years, due to its inherent flexibility, magnetron-sputtering has been widely used to synthesise bi-metallic nanoparticles (NPs) via subsequent inert-gas cooling and gas-phase condensation of the sputtered atomic vapour. Utilising two

  17. Low-temperature plasma etching of high aspect-ratio densely packed 15 to sub-10 nm silicon features derived from PS-PDMS block copolymer patterns.

    Science.gov (United States)

    Liu, Zuwei; Gu, Xiaodan; Hwu, Justin; Sassolini, Simone; Olynick, Deirdre L

    2014-07-18

    The combination of block copolymer (BCP) lithography and plasma etching offers a gateway to densely packed sub-10 nm features for advanced nanotechnology. Despite the advances in BCP lithography, plasma pattern transfer remains a major challenge. We use controlled and low substrate temperatures during plasma etching of a chromium hard mask and then the underlying substrate as a route to high aspect ratio sub-10 nm silicon features derived from BCP lithography. Siloxane masks were fabricated using poly(styrene-b-siloxane) (PS-PDMS) BCP to create either line-type masks or, with the addition of low molecular weight PS-OH homopolymer, dot-type masks. Temperature control was essential for preventing mask migration and controlling the etched feature's shape. Vertical silicon wire features (15 nm with feature-to-feature spacing of 26 nm) were etched with aspect ratios up to 17 : 1; higher aspect ratios were limited by the collapse of nanoscale silicon structures. Sub-10 nm fin structures were etched with aspect ratios greater than 10 : 1. Transmission electron microscopy images of the wires reveal a crystalline silicon core with an amorphous surface layer, just slightly thicker than a native oxide. PMID:24971641

  18. Low-temperature plasma etching of high aspect-ratio densely packed 15 to sub-10 nm silicon features derived from PS-PDMS block copolymer patterns

    International Nuclear Information System (INIS)

    The combination of block copolymer (BCP) lithography and plasma etching offers a gateway to densely packed sub-10 nm features for advanced nanotechnology. Despite the advances in BCP lithography, plasma pattern transfer remains a major challenge. We use controlled and low substrate temperatures during plasma etching of a chromium hard mask and then the underlying substrate as a route to high aspect ratio sub-10 nm silicon features derived from BCP lithography. Siloxane masks were fabricated using poly(styrene-b-siloxane) (PS-PDMS) BCP to create either line-type masks or, with the addition of low molecular weight PS-OH homopolymer, dot-type masks. Temperature control was essential for preventing mask migration and controlling the etched feature’s shape. Vertical silicon wire features (15 nm with feature-to-feature spacing of 26 nm) were etched with aspect ratios up to 17 : 1; higher aspect ratios were limited by the collapse of nanoscale silicon structures. Sub-10 nm fin structures were etched with aspect ratios greater than 10 : 1. Transmission electron microscopy images of the wires reveal a crystalline silicon core with an amorphous surface layer, just slightly thicker than a native oxide. (paper)

  19. Kinetic trapping through coalescence and the formation of patterned Ag-Cu nanoparticles.

    Science.gov (United States)

    Grammatikopoulos, Panagiotis; Kioseoglou, Joseph; Galea, Antony; Vernieres, Jerome; Benelmekki, Maria; Diaz, Rosa E; Sowwan, Mukhles

    2016-05-14

    In recent years, due to its inherent flexibility, magnetron-sputtering has been widely used to synthesise bi-metallic nanoparticles (NPs) via subsequent inert-gas cooling and gas-phase condensation of the sputtered atomic vapour. Utilising two separate sputter targets allows for good control over composition. Simultaneously, it involves fast kinetics and non-equilibrium processes, which can trap the nascent NPs into metastable configurations. In this study, we observed such configurations in immiscible, bi-metallic Ag-Cu NPs by scanning transmission electron microscopy (S/TEM) and electron energy-loss spectroscopy (EELS), and noticed a marked difference in the shape of NPs belonging to Ag- and Cu-rich samples. We explained the formation of Janus or Ag@Cu core/shell metastable structures on the grounds of in-flight mixed NP coalescence. We utilised molecular dynamics (MD) and Monte Carlo (MC) computer simulations to demonstrate that such configurations cannot occur as a result of nanoalloy segregation. Instead, sintering at relatively low temperatures can give rise to metastable structures, which eventually can be stabilised by subsequent quenching. Furthermore, we compared the heteroepitaxial diffusivities along various surfaces of both Ag and Cu NPs, and emphasised the differences between the sintering mechanisms of Ag- and Cu-rich NP compositions: small Cu NPs deform as coherent objects on large Ag NPs, whereas small Ag NPs dissolve into large Cu NPs, with their atoms diffusing along specific directions. Taking advantage of this observation, we propose controlled NP coalescence as a method to engineer mixed NPs of a unique, patterned core@partial-shell structure, which we refer to as a "glass-float" (ukidama) structure. PMID:27119383

  20. Aspects of seasonality and flood generating circulation patterns in a mountainous catchment in south-eastern Germany

    OpenAIRE

    Petrow, Th.; B. Merz; Lindenschmidt, K.-E.; Thieken, A. H.

    2007-01-01

    Analyses of discharge series, precipitation fields and flood producing atmospheric circulation patterns reveal that two governing flood regimes exist in the Mulde catchment in south-eastern Germany: frequent floods during the winter and less frequent but sometimes extreme floods during the summer. Differences in the statistical parameters of the discharge data can be found within the catchment from west to east. The discharges are compared to a number of landscape parameters that influence th...

  1. Pattern formation in a spatial plant-wrack model with tide effect on the wrack

    OpenAIRE

    Sun, Gui-Quan; Li, Li; Jin, Zhen; Li, Bai-Lian

    2009-01-01

    Spatial patterns are a subfield of spatial ecology, and these patterns modify the temporal dynamics and stability properties of population densities at a range of spatial scales. Localized ecological interactions can generate striking large-scale spatial patterns in ecosystems through spatial self-organization. Possible mechanisms include oscillating consumer–resource interactions, localized disturbance–recovery processes, and scale-dependent feedback. However, in this paper, our main aim is ...

  2. Formation of micro/nano-scale wrinkling patterns atop shape memory polymers

    International Nuclear Information System (INIS)

    Wrinkling patterns in shape memory polymer (SMP) sputter deposited with a thin layer (10 s nm in thickness) of gold atop are systematically investigated under various conditions. Depending on the surface condition, heating temperature and pre-straining, different patterns of micro/nano-scaled wrinkles are produced. Although elastic buckling of the gold layer is the mechanism behind all types of wrinkles, the shape memory effect (SME) and thermal expansion mismatch (TEM) are the driving force for different patterns after heating to different temperatures, i.e. the evolution of wrinkle pattern is due to the SME after heating to low temperatures and the TEM after heating to high temperatures. The flexibility and convenience in using SMP to achieve different wrinkling patterns is demonstrated. (technical note)

  3. Methodological aspects of an adaptive multidirectional pattern search to optimize speech perception using three hearing-aid algorithms

    Science.gov (United States)

    Franck, Bas A. M.; Dreschler, Wouter A.; Lyzenga, Johannes

    2004-12-01

    In this study we investigated the reliability and convergence characteristics of an adaptive multidirectional pattern search procedure, relative to a nonadaptive multidirectional pattern search procedure. The procedure was designed to optimize three speech-processing strategies. These comprise noise reduction, spectral enhancement, and spectral lift. The search is based on a paired-comparison paradigm, in which subjects evaluated the listening comfort of speech-in-noise fragments. The procedural and nonprocedural factors that influence the reliability and convergence of the procedure are studied using various test conditions. The test conditions combine different tests, initial settings, background noise types, and step size configurations. Seven normal hearing subjects participated in this study. The results indicate that the reliability of the optimization strategy may benefit from the use of an adaptive step size. Decreasing the step size increases accuracy, while increasing the step size can be beneficial to create clear perceptual differences in the comparisons. The reliability also depends on starting point, stop criterion, step size constraints, background noise, algorithms used, as well as the presence of drifting cues and suboptimal settings. There appears to be a trade-off between reliability and convergence, i.e., when the step size is enlarged the reliability improves, but the convergence deteriorates. .

  4. Physical mechanisms of self-organization and formation of current patterns in gas discharges of the Townsend and glow types

    Energy Technology Data Exchange (ETDEWEB)

    Raizer, Yu. P.; Mokrov, M. S. [Institute for Problems in Mechanics, Russian Academy of Sciences, Moscow 119526 (Russian Federation)

    2013-10-15

    The paper discusses current filamentation and formation of current structures (in particular, hexagonal current patterns) in discharges of the Townsend and glow types. The aim of the paper, which is in part a review, is to reveal basic reasons for formation of current patterns in different cases, namely, in dielectric barrier discharge, discharge with semiconductor cathode, and micro-discharge between metallic electrodes. Pursuing this goal, we give a very brief review of observations and discuss only those theoretical, computational, and experimental papers that shed light on the physical mechanisms involved. The mechanisms are under weak currents—the thermal expansion of the gas as a result of Joule heating; under enhanced currents—the electric field and ionization rate redistribution induced by space charge. Both mechanisms lead to instability of the homogeneous discharges. In addition, we present new results of numerical simulations of observed short-living current filaments which are chaotic in space and time.

  5. Physical mechanisms of self-organization and formation of current patterns in gas discharges of the Townsend and glow types

    International Nuclear Information System (INIS)

    The paper discusses current filamentation and formation of current structures (in particular, hexagonal current patterns) in discharges of the Townsend and glow types. The aim of the paper, which is in part a review, is to reveal basic reasons for formation of current patterns in different cases, namely, in dielectric barrier discharge, discharge with semiconductor cathode, and micro-discharge between metallic electrodes. Pursuing this goal, we give a very brief review of observations and discuss only those theoretical, computational, and experimental papers that shed light on the physical mechanisms involved. The mechanisms are under weak currents—the thermal expansion of the gas as a result of Joule heating; under enhanced currents—the electric field and ionization rate redistribution induced by space charge. Both mechanisms lead to instability of the homogeneous discharges. In addition, we present new results of numerical simulations of observed short-living current filaments which are chaotic in space and time

  6. Thrombus formation patterns in the HeartMate II ventricular assist device: clinical observations can be predicted by numerical simulations.

    Science.gov (United States)

    Chiu, Wei-Che; Slepian, Marvin J; Bluestein, Danny

    2014-01-01

    Postimplant device thrombosis remains a life-threatening complication and limitation of continuous-flow ventricular assist devices (VADs). Using advanced computational fluid dynamic (CFD) simulations, we successfully depicted various flow patterns, recirculation zones, and stagnant platelet trajectories which promote thrombus formation and observed that they matched actual thrombus formation patterns observed in Thoratec HeartMate II VADs explanted from patients with pump thrombosis. Previously, these small eddies could not be captured by either digital particle image velocimetry or CFD due to insufficient resolution. Our study successfully demonstrated the potential capability of advanced CFD to be adopted for device optimization, leading to enhanced safety and efficacy of VADs for long-term destination therapy. PMID:24399065

  7. Genetic Analysis of Two Female-Sterile Loci Affecting Eggshell Integrity and Embryonic Pattern Formation in Drosophila Melanogaster

    OpenAIRE

    Degelmann, A.; Hardy, P. A.; Mahowald, A. P.

    1990-01-01

    We have analyzed female-sterile mutations at the X-linked loci fs(1)Nas and fs(1)ph which show allele-specific effects on egg shell structure and embryonic pattern formation. The majority of mutant alleles at both loci lead to a collapsed egg phenotype. The maternal effect lethal phenotype is characterized by cuticle defects resembling those found in three autosomal mutants of the terminal class. We have analyzed the complementation behavior of various heteroallelic combinations at both loci ...

  8. Target morphology and cell memory: a model of regenerative pattern formation

    Directory of Open Access Journals (Sweden)

    Nikolai Bessonov

    2015-01-01

    Full Text Available Despite the growing body of work on molecular components required for regenerative repair, we still lack a deep understanding of the ability of some animal species to regenerate their appropriate complex anatomical structure following damage. A key question is how regenerating systems know when to stop growth and remodeling - what mechanisms implement recognition of correct morphology that signals a stop condition? In this work, we review two conceptual models of pattern regeneration that implement a kind of pattern memory. In the first one, all cells communicate with each other and keep the value of the total signal received from the other cells. If a part of the pattern is amputated, the signal distribution changes. The difference fromthe original signal distribution stimulates cell proliferation and leads to pattern regeneration, in effect implementing an error minimization process that uses signaling memory to achieve pattern correction. In the second model, we consider a more complex pattern organization with different cell types. Each tissue contains a central (coordinator cell that controls the tissue and communicates with the other central cells. Each of them keeps memory about the signals received from other central cells. The values of these signals depend on the mutual cell location, and the memory allows regeneration of the structure when it is modified. The purpose of these models is to suggest possible mechanisms of pattern regeneration operating on the basis of cell memory which are compatible with diverse molecular implementation mechanisms within specific organisms.

  9. A multimutation model for cancer based on age-time patterns of radiation effects. 1. Mathematical and epidemiological aspects

    International Nuclear Information System (INIS)

    An idealized mathematical model for carcinogenesis is proposed, based on age-time patterns of excess solid cancer risk seen in the Radiation Effects Research Foundation data on A-bomb survivors. The primary component is similar to the Armitage-Doll multistage model, with the interpretation that the events in that model are somatic mutations. The manner of extending this model to incorporate effects of a specific carcinogen, here an acute irradiation, is novel in the sense that the irradiation can cause any one of the mutations in the multi-event process. The motivation for this formulation is the observation that the excess solid cancer rate associated with radiation exposure appears largely to depend only on attained age, rather than on age at exposure and time since exposure. The model is fitted to the A-bomb survivor data on a class of cancers consisting of the major non-sex-specific types. (author)

  10. Manipulation, stabilization, and control of pattern formation using Fourier space filtering

    DEFF Research Database (Denmark)

    Juul Jensen, S.; Schwab, M.; Denz, C.

    1998-01-01

    -plane filtering, utilizing only a few percent of the system's intensity. We were able to stabilize desired but not predominantly excited patterns in parameter space regions where several patterns are present as underlying solutions. By positive (in-phase) and negative (out-of-phase) control, rolls could be......We present an experimental realization of an almost noninvasive stabilization and manipulation method of coexisting and underlying states of pattern forming systems. In a photorefractive single feedback system, a ring control path is used to realize amplitude and phase-sensitive Fourier...... excited in parameter regions where hexagonal structures are preferably stable....

  11. Self-assembly structure formation on patterned InP surfaces

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    Self-assembly of polystyrene spheres guided by patterned n-type InP substrates has been investigated. InP surfaces were patterned using a variety of methods including wet chemical etching,sputter coating,thermal evaporation,and photo lithography. The self-assembly of polystyrene spheres depended on the appearance of patterns and was affected by the deposition techniques (sputter coating and thermal evaporation) of Au micro-squares. SEM and AFM were used to characterize the surface morphologies.

  12. Measurements of pattern formation in a confocal optical parametrical oscillator with applications in quantum optics

    DEFF Research Database (Denmark)

    Lassen, Mikael Østergaard; Buchhave, Preben

    We describe simultaneous measurements of signal/idler near field and far field patterns of a 2nd order nonlinear multi-mode parametric downconverter. We also describe the use of auto- and cross correlation techniques to obtain statistical data....

  13. Swarming and complex pattern formation in Paenibacillus vortex studied by imaging and tracking cells

    NARCIS (Netherlands)

    Ingham, C.J.; Jacob, Ben E.

    2008-01-01

    Background: Swarming motility allows microorganisms to move rapidly over surfaces. The Grampositive bacterium Paenibacillus vortex exhibits advanced cooperative motility on agar plates resulting in intricate colonial patterns with geometries that are highly sensitive to the environment. The cellular

  14. Pattern formation in a cell based auxin transport model with numerical bifurcation analysis

    CERN Document Server

    Draelants, Delphine; Beemster, Gerrit T S; Vanroose, Wim

    2012-01-01

    Transport models of growth hormones can be used to reproduce the hormone accumulations that occur in plant organs. Mostly, these accumulation patterns are calculated using time step methods, even though only the resulting steady state patterns of the model are of interest. We examine the steady state solutions of the hormone transport model of Smith et al (2006) for a one-dimensional row of plant cells. We search for the steady state solutions as a function of three of the model parameters by using numerical continuation methods and bifurcation analysis. These methods are more adequate for solving steady state problems than time step methods. We discuss a trivial solution where the concentrations of hormones are equal in all cells and examine its stability region. We identify two generic bifurcation scenarios through which the trivial solution loses its stability. The trivial solution becomes either a steady state pattern with regular spaced peaks or a pattern where the concentration is periodic in time.

  15. A Review of Aspects of Oxidative Hair Dye Chemistry with Special Reference to N-Nitrosamine Formation

    OpenAIRE

    Jamie Hawkes; John Mama; David Lewis

    2013-01-01

    This review discusses a new aspect to the safety profile of oxidative hair dyes using data already in the public domain. These dyes contain secondary amines that are capable of forming potentially carcinogenic nitrosamine derivatives when exposed to atmospheric pollution. Numerous scientific articles confirm the existence of secondary amines in hair dyes (and their intermediates), the possibility of nitrosation by atmospheric NOx of secondary amines to give the N-nitrosamines, and the signifi...

  16. Numerical study of the dynamical aspects of pattern selection in the stochastic Swift-Hohenberg equation in one dimension

    International Nuclear Information System (INIS)

    We solve numerically both the deterministic stochastic Swift-Hohenberg equation [J. Swift and P. C. Hohenberg, Phys. Rev. A 15, 319 (1977)] in one spatial dimension. In the deterministic case we address the question of pattern selection by studying the temporal evolution away from a uniform, unstable solution. The asymptotic stationary solutions found are periodic in space with a range of wave numbers that is narrow, and consistent with earlier theoretical predictions on the range of allowable periodicities in a finite system. In the stochastic case, the power spectrum of the stationary solutions is very broad and typical configurations do not have a well-defined periodicity. A correlation length is defined that measures the extent over which a stationary solution is periodic. We find that the correlation length is finite, smaller than the size of the system studied and decreases with the amplitude of the stochastic contribution. We confirm these findings by performing a Monte Carlo heat-bath simulation that directly samples the stationary probability distribution function associated with the Lyapunov functional from which the Swift-Hohenberg equation is derived

  17. Fractures Patterns of Tight Carbonates of Upper Jurassic Arab-D Member and Upper Jubaila Formation Outcrops, Central Saudi Arabia

    Science.gov (United States)

    Abdullatif, Osman; Abdlmutalib, Ammar

    2015-04-01

    This study investigates the fracture patterns of the upper Jurassic Arab-D member and upper Jubaila Formation outcropping in central Saudi Arabia. These strata represent the outcrop equivalent for Arab-D reservoir. The upper Jubaila Formation was deposited in the lower to upper slope to ramp crest leading to deposition Stromatoporoid lithofacies association, while Arab-D member deposited under deep to shallow lagoonal settings including skeletal bank and tidal flat lithofacies associations. This study utilized high resolution outcrop scale integrated fracture analysis, sedimentological and stratigraphical approach and methods.The field data included lithofacies, stratigraphic hierarchy, cyclicity and fracture measurements of orientation, length, spacing, intensity, and aperture. The Arab-D member is affected by five fracture patterns: (a) regular large scale fractures NW striking, several meters widely spaced, vertically dipping and cutting through several beds; (b) regular medium scale fractures striking NE and vertically dipping, moderately spaced and extending from two to three meters in length and cut through two or three beds; (c) regular small scale fractures that are arrested near the bed boundary vertically dipping and having less than one meter length and spacing; (d) irregular fractures filled with chemically weathered materials; (e) large scale fractures oriented perpendicular to the first fracture pattern in (a) along the outcrop strike and also cut on the top of the resistive sandy grainstone lithofacies of Arab D member. In contrast, the Upper Jubaila Formation is characterized mostly by medium scale NW and NE striking fractures that near vertically dipping and extended within one or two beds. Irregular small scale fractures also occur within parts of the beds of this group.Fracture formation and development in the Arab D and Jubaila Formation are partially attributed to regional tectonics affected the study area and locally to stratigraphic and

  18. Heparan sulphation patterns generated by specific heparan sulfotransferase enzymes direct distinct aspects of retinal axon guidance at the optic chiasm.

    Science.gov (United States)

    Pratt, Thomas; Conway, Christopher D; Tian, Natasha M M-L; Price, David J; Mason, John O

    2006-06-28

    Retinal ganglion cell (RGC) axons from each eye execute a series of maneuvers as they converge on the ventral surface of the brain at the optic chiasm for sorting into the optic tracts. Heparan sulfate proteoglycans (HSPGs) are extracellular glycoproteins involved in cell-surface interactions. HSPGs exhibit massive structural diversity, conferred partly by extensive post-translational modification including differential sulfation. Here we examine the roles of HSPG sulfation in RGC axon guidance at the chiasm. We identified different axon navigation phenotypes in two heparan sulfate sulfotransferase (Hst) mutant embryos, Hs2st-/- and Hs6st1-/-, each lacking an enzyme that catalyzes a particular HSPG modification. Hs2st-/- embryos display axon disorganization at the chiasm. Hs6st1-/- embryos exhibit prolific inter-retinal innervation. We show that RGCs express Hs2st and Hs6st1 and that navigation errors made by their axons coincide with regions of high Hs2st and/or Hs6st1 expression at the chiasm. Slit proteins are expressed at particular locations in the retina and around the chiasm and are normally deployed to prevent axons entering inappropriate territories. We show that Hs2st and/or Hs6st1 expression coincides with Slit expression domains at locations where RGC axons make navigation errors in Hs2st-/- and Hs6st1-/- mutants and that Hs6st1-/- RGC axons are less sensitive to Slit2 repulsion than their wild-type counterparts in vitro. We suggest that (1) Hs2st and Hs6st1 are each deployed to generate distinct patterns of heparan sulfation on RGCs and at the optic chiasm and (2) this differential sulfation directs retinal axons through the chiasm, at least in part by modulating the response of the navigating growth cone to Slit proteins. PMID:16807321

  19. Pattern formation in directional solidification under shear flow. II. Morphologies and their characterization

    International Nuclear Information System (INIS)

    In the preceding paper, we have established an interface equation for directional solidification under the influence of a shear flow parallel to the interface. This equation is asymptotically valid near the absolute stability limit. The flow, described by a nonlocal term, induces a lateral drift of the whole pattern due to its symmetry-breaking properties. We find that at not-too-large flow strengths, the transcritical nature of the transition to hexagonal patterns shows up via a hexagonal modulation of the stripe pattern even when the linear instability threshold of the flowless case has not yet been attained. When the flow term is large, the linear description of the drift velocity breaks down and transitions to flow-dominated morphologies take place. The competition between flow-induced and diffusion-induced patterns (controlled by the temperature gradient) leads to new phenomena such as the transition to a different lattice structure in an array of hexagonal cells. Several methods to characterize the morphologies and their transitions are investigated and compared. In particular, we consider two different ways of defining topological defects useful in the description of patterns and we discuss how they are related to each other

  20. Formation of Polychlorinated Biphenyls on Secondary Copper Production Fly Ash: Mechanistic Aspects and Correlation to Other Persistent Organic Pollutants

    Science.gov (United States)

    Jiang, Xiaoxu; Liu, Guorui; Wang, Mei; Zheng, Minghui

    2015-09-01

    Emission of unintentionally formed polychlorinated biphenyls (PCBs) from industrial thermal processes is a global issue. Because the production and use of technical PCB mixtures has been banned, industrial thermal processes have become increasingly important sources of PCBs. Among these processes, secondary copper smelting is an important PCB source in China. In the present study, the potential for fly ash-mediated formation of PCBs in the secondary copper industry, and the mechanisms involved, were studied in laboratory thermochemical experiments. The total PCB concentrations were 37-70 times higher than the initial concentrations. Thermochemical reactions on the fly ash amplified the potential toxic equivalents of PCBs. The formation of PCBs over time and the effect of temperature were investigated. Based on analyses of PCB homologue profiles with different reaction conditions, a chlorination mechanism was proposed for forming PCBs in addition to a de novo synthesis mechanism. The chlorination pathway was supported by close correlations between each pair of adjacent homologue groups. Formation of PCBs and multiple persistent organic pollutants, including polychlorinated dibenzo-p-dioxins, polychlorinated dibenzofurans and polychlorinated naphthalenes, occurred during the tests, indicating that these compounds may share similar formation mechanisms.

  1. Concurrent formation of furan-2,5-and furan-2,4-dicarboxylic acid: unexpected aspects of the Henkel reaction

    NARCIS (Netherlands)

    Thiyagarajan, S.; Pukin, A.; Haveren, van J.; Lutz, M.; Es, van D.S.

    2013-01-01

    The concurrent formation of furan-2,5- and furan-2,4-dicarboxylic acid under solvent free conditions via a disproportionation reaction is described. By reacting potassium-2-furoate at 260 degrees C in the presence of 22 mol% of (Lewis acidic) catalysts like CdI2 or ZnCl2, potassium-2-furoate is disp

  2. A Review of Aspects of Oxidative Hair Dye Chemistry with Special Reference to N-Nitrosamine Formation

    Directory of Open Access Journals (Sweden)

    Jamie Hawkes

    2013-02-01

    Full Text Available This review discusses a new aspect to the safety profile of oxidative hair dyes using data already in the public domain. These dyes contain secondary amines that are capable of forming potentially carcinogenic nitrosamine derivatives when exposed to atmospheric pollution. Numerous scientific articles confirm the existence of secondary amines in hair dyes (and their intermediates, the possibility of nitrosation by atmospheric NOx of secondary amines to give the N-nitrosamines, and the significant safety risks on N-nitrosamines. It is believed that such nitrosamine derivatives should be investigated more fully in the interests of consumer safety.

  3. Pattern formation of cytochrome c by microcontact printing and dip-pen nanolithography

    International Nuclear Information System (INIS)

    We report the results of fabricating micrometer and submicrometer-scale patterns of cytochrome c on gold surfaces. We used direct micro-contact printing (μCP) and indirect dip-pen nanolithography (DPN) for fabricating cytochrome c arrays. The protein dots were formed in diameters of 2 μm by μCP and of ∼200 nm by DPN, respectively. We analyzed the pattern size and height of protein arrays with atomic force microscopy (AFM). We expect that these methods will be potentially useful for developing small-scale biosensors and protein chip microarrays

  4. Comparison of defect cluster accumulation and pattern formation in irradiated copper and nickel

    Energy Technology Data Exchange (ETDEWEB)

    Zinkle, S.J.; Snead, L.L. [Oak Ridge National Lab., TN (United States); Edwards, D.J. [Pacific Northwest Lab., Richland, WA (United States)] [and others

    1995-04-01

    The objective of this study is to compare the contrasting behavior of defect cluster formation in neutron-irradiated copper and nickel specimens. Transmission electron microscopy was used to examine the density and spatial distribution of defect clusters produced in copper and nickel as the result of fission neutron irradiation to damage levels of 0.01 to 0.25 displacements per atom (dpa) at irradiation temperature between 50 and 230{degrees}C. A comparison with published results in the literature indicates that defect cluster wall formation occurs in nickel irradiated at 0.2 to 0.4 T{sub M} in a wide variety of irradiation spectra. Defect cluster wall formation apparently only occurs in copper during low temperature irradiation with electrons and light ions. These results are discussed in terms of the thermal spike model for energetic displacement cascades.

  5. Pattern formation for a model of plankton allelopathy with cross-diffusion

    DEFF Research Database (Denmark)

    Tian, C.R.; Zhang, Lai; Lin, Z.G.

    2011-01-01

    In this paper, we develop a theoretical framework for investigating spatial patterns on plankton allelopathy with cross-diffusion. We show that under some conditions the cross-diffusion is able to induce the Turing instability, which is further confirmed by the numerical simulations. Moreover...

  6. Formation of ring calcium oxalate patterns induced by domains in DPPC Langmuir-Blodgett films

    Institute of Scientific and Technical Information of China (English)

    Yi Ming Liu; Sui Ping Deng; Hui Zheng; Jian Ming Ouyang

    2007-01-01

    The ring patterns of calcium oxalate crystals were induced by domains in Langmuir-Blodgett (LB) films of dipalmitoylpho-sphatidylcholine (DPPC). The result was explained by the defects at the ring boundaries of liquid condensed (LC) and liquid expanded (LE) phases of LB film. These boundaries could provide less free energy and much more nucleating sites for COM crystals.

  7. Czech alien flora and the historical pattern of its formation: what came first to Central Europe?

    Czech Academy of Sciences Publication Activity Database

    Pyšek, Petr; Sádlo, Jiří; Mandák, Bohumil; Jarošík, V.

    2003-01-01

    Roč. 135, - (2003), s. 122-130. ISSN 0029-8549 R&D Projects: GA AV ČR KSK6005114; GA ČR GA206/99/1239 Institutional research plan: CEZ:AV0Z6005908 Keywords : alien flora * immigration pattern * invasion history Subject RIV: EF - Botanics Impact factor: 3.128, year: 2003

  8. Biosilica-glass formation using enzymes from sponges [silicatein]: Basic aspects and application in biomedicine [bone reconstitution material and osteoporosis

    Science.gov (United States)

    Wang, Shun-Feng; Wang, Xiao-Hong; Gan, Lu; Wiens, Matthias; Schröder, Heinz C.; Müller, Werner E. G.

    2011-09-01

    In the last 15 years biomineralization, in particular biosilicification (i.e., the formation of biogenic silica, SiO2), has become an exciting source of inspiration for the development of novel bionic approaches, following "Nature as model". Among the silica forming organisms there are the sponges that have the unique property to catalyze their silica skeletons by a specific enzyme termed silicatein. In the present review we summarize the present state of knowledge on silicatein-mediated "biosilica" formation in marine sponges, the involvement of further molecules in silica metabolism and their potential application in biomedicine. Recent advancements in the production of bone replacement material and in the potential use as a component in the treatment of osteoporosis are highlighted.

  9. Formation of Polychlorinated Biphenyls on Secondary Copper Production Fly Ash: Mechanistic Aspects and Correlation to Other Persistent Organic Pollutants

    OpenAIRE

    Xiaoxu Jiang; Guorui Liu; Mei Wang; Minghui Zheng

    2015-01-01

    Emission of unintentionally formed polychlorinated biphenyls (PCBs) from industrial thermal processes is a global issue. Because the production and use of technical PCB mixtures has been banned, industrial thermal processes have become increasingly important sources of PCBs. Among these processes, secondary copper smelting is an important PCB source in China. In the present study, the potential for fly ash-mediated formation of PCBs in the secondary copper industry, and the mechanisms involve...

  10. Aspects of the microvertebrate fauna of the Early Cretaceous (Barremian) Wessex Formation of the Isle of Wight, southern England

    OpenAIRE

    Sweetman, Steve

    2007-01-01

    Until this study, the microvertebrate fauna of the Early Cretaceous (Barremian) Wessex Formation of the Isle of Wight, southern England,was virtually unknown. A comprehensive survey of potentially productive horizons was undertaken using bulk screening techniques and this yielded an unexpectedly diverse microvertebrate fauna together with fragmentary but significant remains of hitherto unknown elements of the associated macro-fauna. At least forty one previously unrecorded tetrapod taxa have ...

  11. First union formation in Estonia, Latvia and Lithuania: patterns across countries and gender

    Directory of Open Access Journals (Sweden)

    Luule Sakkeus

    2007-11-01

    Full Text Available This article examines the transformation of first union formation in the Baltic countries between the late 1960s and early 1990s, in the context of societal and family-level gender relations. The analyses employ microdata from the European Family and Fertility Surveys program. Our results on the trends indicate that in Estonia and Latvia the shift from direct marriage to cohabitation started well before the fall of socialist regime. Event-history models provide support for a hypothesised association between union formation and gender system, with Lithuania showing more traditional features in both respect, plausibly embedded in long-standing cultural differences between the countries.

  12. The splicing factor SRSF1 modulates pattern formation by inhibiting transcription of tissue specific genes during embryogenesis.

    Science.gov (United States)

    Lee, Soo-Ho; Lee, Hyun-Kyung; Kim, Chowon; Kim, Yoo-Kyung; Ismail, Tayaba; Jeong, Youngeun; Park, Kyeongyeon; Park, Jeen-Woo; Kwon, Oh-Shin; Kang, Beom Sik; Lee, Dong-Seok; Park, Mae-Ja; Park, Do-Sim; Lee, Hyun-Shik

    2016-09-01

    Alternative splicing is a major mechanism regulating pattern of gene expression through the production of multiple mRNAs from a single gene transcript. Any misregulation can cause various human diseases and also have severe effects on embryogenesis. SRSF1 is one of the critical factors regulating alternative splicing at many stages of vertebrate development and any disturbance in SRSF1 leads to serious consequences. In current study, we investigated the effects of loss of the SRSF1 gene using antisense morpholino oligonucleotides (MO) in Xenopus embryogenesis. It is evident from the results of RT-PCR and whole-mount in situ hybridization that SRSF1 is a maternal gene having strong expression in head, eyes and central nervous system. Moreover, SRSF1 morphants exhibited malformed phenotypes, including miscoiled guts, heart and cartilage formation, edema in the head and heart, and small eyes. Especially, in SRSF1 morphants, bone cartilage formation was reduced in the brain and Nkx-2.5 expression was dramatically reduced in the heart of SRSF1 morphants. In addition, a dramatic reduction in functional chordin RNA in SRSF1 morphants was observed suggesting that chordin is one of the targets of SRSF1. Thus, we concluded that SRSF1 is an essential factor for pattern formation including heart, cartilage and germ layers through the regulation of specific genes. PMID:27396620

  13. Patterns and sources of variation in pollen deposition and pollen tube formation in flowers of the endemic monoecious shrub Cnidoscolus souzae (Euphorbiaceae).

    Science.gov (United States)

    Arceo-Gómez, G; Alonso, C; Abdala-Roberts, L; Parra-Tabla, V

    2016-07-01

    Pollen deposition and pollen tube formation are key components of angiosperm reproduction but intraspecific variation in these has rarely been quantified. Documenting and partitioning (populations, plants and flowers) natural variation in these two aspects of plant reproduction can help uncover spatial mosaics of reproductive success and underlying causes. In this study, we assess variation in pollen deposition and pollen tube formation for the endemic monoecious shrub Cnidoscolus souzae throughout its distribution range in Mexico, and determine how this variation is structured among populations, plants and flowers. We also infer the relative importance of pollen quantity and quality in determining pollination success in this species. While we found no evidence suggesting that pollen receipt limits C. souzae reproduction across 19 populations, we did find extensive variation in pollen load size and pollen tube number per flower. Total variation in pollen receipt and pollen tube number was mostly explained by intra-individual and among-population variance. Furthermore, pollen load size had a stronger effect on the number of pollen tubes at the base of the style than pollen germination rate, suggesting that pollen quantity may be more important than quality for pollen tube success in C. souzae. Our results suggest that both small within-plant flower differences and broad-scale differences in community attributes can play an important role in determining pollination success. We emphasise the need to evaluate patterns and sources of variation in pollen deposition and pollen tube formation as a first step in understanding the causes of variation in pollination success over broad spatial scales. PMID:26916543

  14. The influence of projectile ion induced chemistry on surface pattern formation

    Science.gov (United States)

    Karmakar, Prasanta; Satpati, Biswarup

    2016-07-01

    We report the critical role of projectile induced chemical inhomogeneity on surface nanostructure formation. Experimental inconsistency is common for low energy ion beam induced nanostructure formation in the presence of uncontrolled and complex contamination. To explore the precise role of contamination on such structure formation during low energy ion bombardment, a simple and clean experimental study is performed by selecting mono-element semiconductors as the target and chemically inert or reactive ion beams as the projectile as well as the source of controlled contamination. It is shown by Atomic Force Microscopy, Cross-sectional Transmission Electron Microscopy, and Electron Energy Loss Spectroscopy measurements that bombardment of nitrogen-like reactive ions on Silicon and Germanium surfaces forms a chemical compound at impact zones. Continuous bombardment of the same ions generates surface instability due to unequal sputtering and non-uniform re-arrangement of the elemental atom and compound. This instability leads to ripple formation during ion bombardment. For Argon-like chemically inert ion bombardment, the chemical inhomogeneity induced boost is absent; as a result, no ripples are observed in the same ion energy and fluence.

  15. Patterned electrical conductance and electrode formation in ion-implanted diamond films

    International Nuclear Information System (INIS)

    Selective implantation of 140 keV Co ions into self-supporting diamond films converts the surface into a conductive region at which redox electron transfer and metal deposition have been accomplished. Simple masking allows precise definition of the area to be plated within the insulating diamond matrix. Formation and electrochemical characterization of a rotating disk electrode in this manner are demonstrated

  16. Studying the optical second-order interference pattern formation process with classical light in the photon counting regime.

    Science.gov (United States)

    He, Yuchen; Liu, Jianbin; Zhang, Songlin; Wang, Wentao; Bai, Bin; Le, Mingnan; Xu, Zhuo

    2015-12-01

    The formation process of the second-order interference pattern is studied experimentally in the photon counting regime by superposing two independent single-mode continuous-wave lasers. Two-photon interference based on the superposition principle in Feynman's path integral theory is employed to interpret the experimental results. The second-order interference pattern of classical light can be formulated when, with high probability, there are only two photons in the interferometer at one time. The studies are helpful in understanding the second-order interference of classical light in the language of photons. The method and conclusions can be generalized to the third- and higher-order interference of light and interference of massive particles. PMID:26831397

  17. Predicting the distribution of spiral waves from cell properties in a developmental-path model of Dictyostelium pattern formation.

    Directory of Open Access Journals (Sweden)

    Daniel Geberth

    2009-07-01

    Full Text Available The slime mold Dictyostelium discoideum is one of the model systems of biological pattern formation. One of the most successful answers to the challenge of establishing a spiral wave pattern in a colony of homogeneously distributed D. discoideum cells has been the suggestion of a developmental path the cells follow (Lauzeral and coworkers. This is a well-defined change in properties each cell undergoes on a longer time scale than the typical dynamics of the cell. Here we show that this concept leads to an inhomogeneous and systematic spatial distribution of spiral waves, which can be predicted from the distribution of cells on the developmental path. We propose specific experiments for checking whether such systematics are also found in data and thus, indirectly, provide evidence of a developmental path.

  18. Pattern Formation in the Turing-Hopf Codimension-2 Phase Space in a Reaction-Diffusion System

    Institute of Scientific and Technical Information of China (English)

    YUAN Xu-Jin; SHAO Xin; LIAO Hui-Min; OUYANG Qi

    2009-01-01

    We systematically investigate the behaviour of pattern formation in a reaction-diffusion system when the system is located near the Turing-Hopf codimension-2 point in phase space. The chloride-iodide-malonic acid (CIMA) reaction is used in this study. A phase diagram is obtained using the concentration of polyvinyl alcohol (PVA) and malonic acid (MA) as control parameters. It is found that the Turing-Hopf mixed state appears only in a small vicinity near the codimension-2 point, and has the form of hexagonal pattern overlapped with anti-target wave; the boundary line separating the Thring state and the wave state is independent of the concentration of MA, only relies on the concentration of PVA. The corresponding numerical simulation using the Lengyel-Epstein (LE) model gives a similar phase diagram as the experiment; it reproduces most patterns observed in the experiment. However, the mixed state we obtain in simulation only appears in the anti-wave tip area, implying that the 3-D effect in the experiments may change the pattern forming behaviour in the codimension-2 regime.

  19. Intramolecular vibrations and noise effects on pattern formation in a molecular helix.

    Science.gov (United States)

    Fouda, H P Ekobena; Tabi, C B; Mohamadou, A; Kofané, T C

    2011-09-21

    Modulational instability in a biexciton molecular chain is addressed. We show that the model can be reduced to a set of three coupled equations: two nonlinear Schrödinger equations and a Boussinesq equation. The linear stability analysis of continuous wave solutions of the coupled systems is performed and the growth rate of instability is found numerically. Simulations of the full discrete systems reveal some behaviors of modulational instability, since wave patterns are observed for the excitons and the phonon spectrum. We also take the effect of thermal fluctuations into account and we numerically study both the stability and the instability of the plane waves under 300 K. The plane wave is found to be stable under modulation, but displays a gradual increase of the wave amplitudes. Under modulation, the same behaviors are observed and wave patterns are found to resist thermal fluctuations, which is in agreement with earlier research on localized structure stability under thermal noise. PMID:21878712

  20. Quantum noise and spatio-temporal pattern formation in nonlinear optics

    DEFF Research Database (Denmark)

    Bache, Morten

    2002-01-01

    second-harmonic field, and the distinct peaks at the critical wave numbers reveal a quantum image. A microscopical model is suggested as a guide to understanding the processes involved in producing a classical pattern. Finally, the quantum nature of the correlations leads to spatial multimode...... rise to spatially modulated structures, patterns. The two main parts of the thesis are the classical model and the quantum mechanical model, the latter being an extension of the former by including the inherent quantum fluctuations of light. From a theoretical point of view the classical dynamics are...... the singly resonant cavity setup, where the first experimental observation of the fast oscillating self-pulsing solutions is shown. The IPOPO model confirms very well the oscillation frequencies as well as the regions of stability observed in the experiment. The quantum mechanical investigations...

  1. Intramolecular vibrations and noise effects on pattern formation in a molecular helix

    Energy Technology Data Exchange (ETDEWEB)

    Ekobena Fouda, H P; Tabi, C B [Laboratory of Biophysics, Department of Physics, Faculty of Science, University of Yaounde I, PO Box 812, Yaounde (Cameroon); Mohamadou, A [Condensed Matter Laboratory, Department of Physics, Faculty of Science, University of Douala, PO Box 24157, Douala (Cameroon); Kofane, T C, E-mail: hekobena@gmail.com, E-mail: contab408@hotmail.com, E-mail: mohdoufr@yahoo.fr, E-mail: tckofane@yahoo.com [Laboratory of Mechanics, Department of Physics, Faculty of Science, University of Yaoune I, PO Box 812, Yaounde (Cameroon)

    2011-09-21

    Modulational instability in a biexciton molecular chain is addressed. We show that the model can be reduced to a set of three coupled equations: two nonlinear Schroedinger equations and a Boussinesq equation. The linear stability analysis of continuous wave solutions of the coupled systems is performed and the growth rate of instability is found numerically. Simulations of the full discrete systems reveal some behaviors of modulational instability, since wave patterns are observed for the excitons and the phonon spectrum. We also take the effect of thermal fluctuations into account and we numerically study both the stability and the instability of the plane waves under 300 K. The plane wave is found to be stable under modulation, but displays a gradual increase of the wave amplitudes. Under modulation, the same behaviors are observed and wave patterns are found to resist thermal fluctuations, which is in agreement with earlier research on localized structure stability under thermal noise. (paper)

  2. Expression Patterns and Subcellular Localization of Carbonic Anhydrases Are Developmentally Regulated during Tooth Formation

    OpenAIRE

    Reibring, Claes-Göran; El Shahawy, Maha; Hallberg, Kristina; Kannius-Janson, Marie; Nilsson, Jeanette; Parkkila, Seppo; Sly, William S; Waheed, Abdul; Linde, Anders; Gritli-Linde, Amel

    2014-01-01

    Carbonic anhydrases (CAs) play fundamental roles in several physiological events, and emerging evidence points at their involvement in an array of disorders, including cancer. The expression of CAs in the different cells of teeth is unknown, let alone their expression patterns during odontogenesis. As a first step towards understanding the role of CAs during odontogenesis, we used immunohistochemistry, histochemistry and in situ hybridization to reveal hitherto unknown dynamic distribution pa...

  3. In situ formation and photo patterning of emissive quantum dots in organic small molecules

    OpenAIRE

    Bansal, Ashu K.; Sajjad, Muhammad Tariq; Antolini, Francesco; Stroea, Lenuta; Gecys, Paulius; Raciukaitis, Gediminas; Andre, Pascal; Hirzer, Andreas; Schmidt, Volker; Ortolani, Luca; Toffanin, Stefano; Allard, Sybille; Scherf, Ullrich; Samuel, Ifor

    2015-01-01

    We acknowledge financial support from FP7 LAMP project “Laser Induced Synthesis of Polymeric Nanocomposite Materials and Development of Micro-patterned Hybrid Light Emitting Diodes (LED) and Transistors (LET)” (Grant No. 247928). AKB and IDWS also acknowledge financial support from EPSRC Programme grant “Challenging the limits of photonics: Structured light” EP/J01771X/1. In addition IDWS acknowledges a Royal Society Wolfson Research Merit Award.

  4. Efficient formation of extended line intensity patterns using matched-filtering generalized phase contrast

    DEFF Research Database (Denmark)

    Bañas, Andrew Rafael; Palima, Darwin; Aabo, Thomas;

    2013-01-01

    We demonstrate the efficient generation of line patterns using matched-filtering Generalized Phase Contrast (mGPC). So far, the main emphasis of mGPC light addressing has been on the creation of rapidly reconfigurable focused spots. This has recently been extended to encoding extended line patter...... for structured light applications and advanced microscopy. © (2013) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE). Downloading of the abstract is permitted for personal use only....

  5. Adduct formation in LC-ESI-MS of nonylphenol ethoxylates: mass spectrometrical, theoretical and quantitative analytical aspects

    International Nuclear Information System (INIS)

    The analysis of nonylphenol ethoxylate (A9PEOn) surfactants with LC-ESI-MS was investigated in a detailed study of the formation of different types of adducts. Part of the observations was explained by calculating their relative stabilities using molecular dynamics techniques. Strong differences in adduct formation behaviour were found for different oligomers. Beside the common sodium adducts, surfactant dimer adducts [2 x A9PEO1,2 + Na]+, adducts including a solvent molecule [A9PEO1,2 + MeOH + Na]+ and doubly charged adducts [A9PEO>11 + 2 x Na]2+ were found. Molecular dynamics calculations showed that the A9PEOn molecule wraps itself around the complexing sodium ion in a way that negative electronic charges on oxygen have optimum electrostatic interaction with this ion. van der Waals interactions between alkyl chains are of less importance for the stability of these adducts. Both [2 x A9PEO2,5 + Na]+ dimer and [A9PEO2,5 + Na]+ monomer adducts turned out to be stable from an energetic point of view with adducts of A9PEO5 being more stable than adducts of A9PEO2. Only for the monomer adduct the latter is in accordance with experimental observations. Consequences of the formation of several adducts per A9PEOn oligomer for the quantitative analysis of environmental samples were evaluated. In clean samples, it was found that the presence of short-chain A9PEO1,2 can cause an overestimation of long-chain A9PEO>2. In real environmental extracts, other processes like matrix effects have a stronger influence on the quantitative result, and therefore no significant influence of adduct formation processes could be observed. However, inclusion of [A9PEO1,2 + MeOH + Na]+ adduct signals does improve the detection limits of the two short-chain oligomers. Correct quantitative results are obtained when A9PEO1 and A9PEO2 are quantified separately, and longer oligomers with a molar calibration followed by correction of the average molar weight of the A9PEO>2 in the sample

  6. Mechanistic Aspects of Monomer,Polymer Formation,and Synthesis of PQ-Alt-Dialkyl-fluorene Conjugated Copolymer

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Suzuki coupling reaction is widely used in the construction of conjugated polymers; however, there is still no report describing the mechanism and coupling of 9,10-phenanthrenequinone(PQ) building blocks via Suzuki reaction because PQ is sensitive to bases and light. Herein is reported the efficient Suzuki coupling of PQ with 9,10-dialkylfluorene with Na2CO3 as basic species and high molecular weight PQ-Alt-Dialkyl-Fluorene conjugated copolymer obtained in an yield of 42%. Based on the characterization data and well-accepted literature, we proposed a step-by-step mechanistic explanation for the formation of the PQ containing alternating conjugated copolymer.

  7. Fractal pattern formation in thermal grooving at grain boundaries in Ag films on Si(111) surfaces

    Energy Technology Data Exchange (ETDEWEB)

    Roy, A. [Department of Materials Science, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032 (India); Sundaravel, B. [Materials Science Group, Indira Gandhi Centre for Atomic Research, Kalpakkam 603102 (India); Batabyal, R. [Department of Materials Science, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032 (India); Dev, B.N., E-mail: msbnd@iacs.res.in [Department of Materials Science, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032 (India)

    2012-05-31

    Growth of Ag films on Br- and H-passivated Si(111) surfaces and the annealing behaviour have been investigated by Rutherford backscattering spectrometry, scanning electron microscopy and photoemission electron microscopy techniques. Upon annealing the phenomenon of thermal grooving was observed in the Ag films. Depending on the annealing temperature, at an intermediate annealing time Ag depletion (evaporation) from the grain boundaries produces fractal patterns of Ag-depleted regions. Continued annealing eventually produces a percolated network of Ag-depleted regions (thermal grooves) along the grain boundaries and isolated Ag grains appear as the depth of the grooves reaches the substrate. For the fractal structures produced by thermal grooving, the fractal dimension has been estimated to be 1.60 {+-} 0.04. Observation of a fractal pattern in thermal grooving was not hitherto reported. A thorough analysis of the experimental results has been carried out in the context of current theories. These theories are inadequate to describe the experimental results. - Highlights: Black-Right-Pointing-Pointer Thermal grooving in Ag films grown on Si(111) surfaces has been investigated. Black-Right-Pointing-Pointer At appropriate temperatures short annealing shows partly depleted grain boundaries. Black-Right-Pointing-Pointer Depleted grain boundaries reveal a fractal pattern with a fractal dimension of 1.60. Black-Right-Pointing-Pointer Long annealing produces percolated Ag-depleted regions with isolated Ag grains. Black-Right-Pointing-Pointer A thorough analysis shows that current theories are unable to explain the results.

  8. The definition of psychological aspects in the formation of student-centered motivation of students for classes in physical education

    Directory of Open Access Journals (Sweden)

    Gruzhevsky V.A.

    2013-10-01

    Full Text Available An analysis of the publications, which demonstrates the importance of the emotional state in the formation of motivation as a psychological phenomenon. Shows the impact of physical education on the state of mental and emotional stress. Presented scientific analysis of psycho-emotional states in the 3rd year students with the region of residence and ethnicity. The study used survey results found that the circumstances are displayed on the psycho-emotional state of students. In their view, were: irritability, lack of confidence, fatigue, concern, guilt, etc. These conditions are more common in women of ethnic groups and from rural areas. It should be noted that the girls are very carefully described their emotional state and chose the answer in the questionnaire (sometimes, this response was dominant. Young men in many positions were more restrained. It is established that the formation of student-centered motivation of students to physical education should be adjusted in their emotional state. In this strategy the learning process of physical education is built on individual, ethnic differences.

  9. ORGANIZATIONAL AND METHODICAL ASPECTS OF FINANCIAL RESULTS FORMATION IN THE SYSTEM OF MANAGEMENT ACCOUNTING OF AGRICULTURAL ORGANIZATIONS

    Directory of Open Access Journals (Sweden)

    Khromova I. N.

    2015-05-01

    Full Text Available The article deals with the essence of the financial results and the need for their operational accounting in economic activities by AIC agents. The authors studied the order of profit formation in agricultural organizations′ management accounting based on industry characteristics, industrial activity specificity, operating cycle duration and management personnel functions. The study proved the need for financial responsibility centers with a view to the most effective organization of business entity management: income centers, cost centers, profit centers. Business entities profit is characterized by its forms and types diversity. As a result of research the authors determined the main classification features according to which this category is considered with better understanding of its economic essence. The accounting financial results will be more objective in the case they timely and present the necessary information for analysis and making management solutions. The authors found that the restriction of income and expenses included in the profit from ordinary activities, determines the need of the development of the alternative accounting within the system of management accounting. The each participant of accounting and analysis provision of financial results formation has particular conditions which cannot be used in traditional accounting or for modern economics analysis. As a result, the authors have carried out an assessment of financial results of accounting with use of analytical procedures

  10. Influence of oxygen gas on characteristics of self-organized luminous pattern formation observed in an atmospheric dc glow discharge using a liquid electrode

    International Nuclear Information System (INIS)

    Self-organized luminous pattern formation is observed in the liquid surface of an atmospheric dc glow discharge using a liquid electrode with a miniature helium flow. The factors affecting pattern formation are the gap length, discharge current, helium mass flow rate and polarity. The pattern shape depends on the conductivity and temperature of the liquid electrode. A variety of patterns were observed by changing the conductivity and temperature of the liquid. We clarified that the self-organized pattern formation depends on the amount of electronegative gas, such as oxygen, in the gas in the electrode gap. When an oxygen gas flow was fed to the liquid surface from the outside in an obliquely downward direction, namely, the amount of oxygen gas on the liquid surface was increased locally, self-organized pattern formation was observed in the region with the increased amount of oxygen gas. When the amount of oxygen in the gas in the gap was changed by using a sheath flow system, the appearance of the pattern changed. The presence of oxygen gas strongly affected the self-organized pattern formation of the atmospheric dc discharge using a liquid anode. (paper)

  11. Reproducible formation of single magnetic bubbles in an array of patterned dots

    Science.gov (United States)

    Liu, T.; Puliafito, V.; Montaigne, F.; Petit, S.; Deranlot, C.; Andrieu, S.; Ozatay, O.; Finocchio, G.; Hauet, T.

    2016-06-01

    The formation conditions of single magnetic bubbles through in-plane field demagnetization are investigated in an array of Co/Ni circular dots by magnetic force microscopy and compared to micromagnetic calculations. We demonstrate high success rates in nucleating stable bubbles. The efficiency of single bubble formation is found to depend not only on the dot size, material thickness and intrinsic material parameters but also on the bubble nucleation path. Experimental phase diagrams and micromagnetic calculations highlight the influence of the starting in-plane field amplitude and dipolar interactions in stabilizing the bubble. The identification of a systematic procedure for controlling nucleation of single bubbles, multidomain states or a uniform state is important from a technological point of view, opening a path toward the realization of reprogrammable magnonic crystals for the control of spin-wave propagation.

  12. Pattern formation of scale cells in Lepidoptera by differential origin-dependent cell adhesion

    OpenAIRE

    Sekimura, T.; Zhu, M.; Cook, J.; Maini, P. K.

    1999-01-01

    We present a model for the formation of parallel rows of scale cells in the developing adult wing of moths and butterflies. Precursors of scale cells differentiate throughout each epithelial monolayer and migrate into rows that are roughly parallel to the body axis. Grafting experiments have revealed what appears to be a gradient of adhesivity along the wing. What is more, cell adhesivity character is maintained after grafting. Thus we suggest that it is a cell’s location prior to migration t...

  13. Trust, responsibility, and freedom: Focus-group research on contemporary patterns of union formation in Russia

    OpenAIRE

    Olga Isupova

    2015-01-01

    Background: While some studies directly address the issue of changes in union formation in Russia and Eastern Europe, few have focused on attitudes and norms regarding marriage and cohabitation. In Russia cohabitation has risen sharply in the last decades, but recently its level has stabilized and even decreased slightly. Objective: We intend to highlight gender and educational differences in perceptions of the advantages and disadvantages of cohabitation vs. marriage. Methods: We condu...

  14. Geochemical patterns and microbial contribution to iron plaque formation in the rice plant rhizosphere

    Science.gov (United States)

    Maisch, Markus; Murata, Chihiro; Unger, Julia; Kappler, Andreas; Schmidt, Caroline

    2015-04-01

    Rice is the major food source for more than half of the world population and 80 percent of the worldwide rice cultivation is performed on water logged paddy soils. The establishment of reducing conditions in the soil and across the soil-water interface not only stimulates the microbial production and release of the greenhouse gas methane. These settings also create optimal conditions for microbial iron(III) reduction and therefore saturate the system with reduced ferrous iron. Through the reduction and dissolution of ferric minerals that are characterized by their high surface activity, sorbed nutrients and contaminants (e.g. arsenic) will be mobilized and are thus available for uptake by plants. Rice plants have evolved a strategy to release oxygen from their roots in order to prevent iron toxification in highly ferrous environments. The release of oxygen to the reduced paddy soil causes ferric iron plaque formation on the rice roots and finally increases the sorption capacity for toxic metals. To this date the geochemical and microbiological processes that control the formation of iron plaque are not deciphered. It has been hypothesized that iron(II)-oxidizing bacteria play a potential role in the iron(III) mineral formation along the roots. However, not much is known about the actual processes, mineral products, and geochemical gradients that establish within the rhizosphere. In the present study we have developed a growth set-up that allows the co-cultivation of rice plants and iron(II)-oxidizing bacteria, as well as the visual observation and in situ measurement of geochemical parameters. Oxygen and dissolved iron(II) gradients have been measured using microelectrodes and show geochemical hot spots that offer optimal growth conditions for microaerophilic iron(II) oxidizers. First mineral identification attempts of iron plaque have been performed using Mössbauer spectroscopy and microscopy. The obtained results on mineraology and crystallinity have been

  15. Constraining the star formation histories of GRB Host Galaxies from their observed abundance patterns

    CERN Document Server

    Calura, F; Prochaska, J X; Matteucci, F

    2008-01-01

    Long-duration Gamma Ray Bursts (GRBs) are linked to the collapse of massive stars and their hosts are exclusively identified as active, star forming galaxies. Four long GRBs observed at high spectral resolution at redshift 1.5 formation history of the host galaxies of these GRBs from the study of the chemical abundances measured in their ISM. We are also able to provide constraints on the age and on the dust content of GRB hosts. Our results support the hypothesis that long duration GRBs occur preferentially in low metallicity, star forming galaxies. We compare the specific star formation rate, namely the star formation rate per unit stellar mass, predicted for the hosts of these GRBs with observational values for GRB hosts distributed across a lar...

  16. Radiographic evaluation and unusual bone formations in different genetic patterns in synpolydactyly

    International Nuclear Information System (INIS)

    To compare the radiological findings of heterozygous and homozygous subjects with synpolydactyly (SPD) and to discuss their unusual bone formations. Families with hand and foot SPD were examined. Genetic analysis was performed with blood samples and the pedigree was constructed. The affected individuals, especially those with distinctive phenotypic features, were invited to our orthopaedics clinic for further diagnostic studies. All participants underwent detailed clinical and X-ray examinations. Of the invited patients, 16 (five female and 11 male; age range 4-37 years, mean age 10.75 years) were included in our study, and hand and foot radiographs were obtained. All subjects had bilateral hand radiographs (32 hands), and 14 had bilateral foot radiographs (28 feet). Genetic analysis revealed 12 heterozygote (75%) and four (25%) homozygote phenotypes. Among patients enrolled into the study nine (three homozygotes, six heterozygotes) had SPD of both hands and feet bilaterally (tetrasynpolydactyly). Six unusual bone formations were observed in the hands and feet: delta phalanx, delta metacarpal/metatarsal, kissing delta phalanx, true double epiphysis, pseudoepiphysis and cone-shaped epiphysis. There were major differences in radiological and clinical manifestations of homozygote and heterozygote phenotypes. The homozygous SPD presented with very distinctive unusual bone formations. The existence and variety of unusual bones may indicate the severity of penetrance and expressivity of SPD. (orig.)

  17. Bifurcation and pattern formation in a coupled higher autocatalator reaction diffusion system

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Spatiotemporal structures arising in two identical cells, which are governed by higher autocatalator kinetics and coupled via diffusive interchange of autocatalyst,are discussed.The stability of the unique homogeneous steady state is obtained by the linearized theory.A necessary condition for bifurcations in spatially non-uniform solutions in uncoupled and coupled systems is given.Further information about Turing pattern solutions near bifurcation points is obtained by weakly nonlinear theory.Finally, the stability of equilibrium points of the amplitude equation is discussed by weakly nonlinear theory, with the bifurcation branches of the weakly coupled system.

  18. A model for gyrotactic pattern formation of motile micro-organisms in turbulence

    CERN Document Server

    Gustavsson, K; Jonsson, P R; Mehlig, B

    2015-01-01

    Recent studies show that the dynamics of motile organisms subject to gravitational torques in turbulence gives rise to patchiness. Spherical motile organisms gather in down-welling regions of the turbulent flow. We determine how shape affects preferential sampling and small-scale spatial clustering (determining local encounter rates) by analysing a statistical model in two and three spatial dimensions. By recursively refining approximations for the paths the organisms take through the flow we determine analytically how preferential sampling and small-scale clustering in the model depend upon the dimensionless parameters of the problem. We show that singularities ("caustics") occur in the dynamics and discuss how these singularities affect spatial patterns.

  19. Suppression of transient enhanced diffusion in sub-micron patterned silicon template by dislocation loops formation

    International Nuclear Information System (INIS)

    We investigate the evolution of two dimensional transient enhanced diffusion (TED) of phosphorus in sub-micron scale patterned silicon template. Samples doped with low dose phosphorus with and without high dose silicon self-implantation, were annealed for various durations. Dopant diffusion is probed with plane-view scanning capacitance microscopy. The measurement revealed two phases of TED. Significant suppression in the second phase TED is observed for samples with high dose self-implantation. Transmission electron microscopy suggests the suppressed TED is related to the evolution of end of range defect formed around ion implantation sidewalls

  20. The pattern of extreme star formation events in SDSS quasar hosts in Herschel fields

    Science.gov (United States)

    Pitchford, Lura Katherine; Hatziminaoglou, Evanthia; Feltre, Anna; Clarke, Charlotte; Farrah, Duncan; Harris, Kathryn Amy; Hurley, Peter; Oliver, Sebastian; Page, Mat; Wang, Lingyu

    2016-01-01

    Using a sample of ~500 quasars up to redshifts of ~4 detected by the Sloan Digital Sky Survey (SDSS) and the Spectral and Photometric Imaging Receiver (SPIRE) instrument of Herschel, we describe the behavior of intense starbursts in luminous quasars and how it correlates with the properties of the active galactic nuclei (AGN). We select our objects in the Herschel Stripe 82 Survey (HerS) and in the largest fields of the Herschel Multi-tiered Extragalactic Survey (HerMES), including the HerMES Large Mode Survey (HeLMS).The far-infrared (FIR) emission of our objects is quantified using a spectral energy distribution (SED) fitting technique. As our sources are individually detected in the SPIRE bands, they are bright in the FIR, exhibiting typical star formation rates (SFRs) of order of 1000 M⊙yr-1. We find the SFR to increase by a factor of nearly ten from z~0.5 to z~3, in line with the increasing comoving SFR density over a similar redshift range. The SFR, however, is shown to remain constant with increasing quasar luminosity for quasars with IR luminosities above 1012L⊙, indicating a self-regulating star formation process rather than a suppression effect due to the presence of powerful AGN. We find no further proof of a causal relation between star formation and accretion onto the central black hole, as the SFR and the Eddington ratio, λEdd, are found to be uncorrelated.We then compare the broad absorption line (BAL) quasars to the rest of the quasar population, as they are candidates for outflows in action from which shorter-term feedback effects could be sought. We find the accretion luminosities and λEdd values of BAL quasars to be drawn from the same population as those of the non-BAL quasars; further, the host SFRs are statistically similar among the two populations, all of which argue against feedback effects. These similarities also oppose an evolutionary scenario, as a different evolutionary stage would imply differences in either the accretion state

  1. Continuum model for pattern formation on ion-beam eroded surfaces under target rotation

    International Nuclear Information System (INIS)

    A recently proposed continuum model for the formation of nanostructures on semiconductor surfaces generated by low-energy ion-beam erosion under normal and oblique ion incidence is generalized to the case of additional target rotation. After transformation, this model takes on the form of a driven damped isotropic Kuramoto-Sivashinsky equation. Primary focus of our investigation is the theoretical analysis of the competition of flat, hexagonal and square-like surface structures as function of the external rotation rate and the sputtering time. As a major result, we find that target rotation stabilizes the occurence of flat surfaces. Comparison with recent experimental results is also given

  2. Regular pattern formation on surface of aromatic polymers and its cytocompatibility

    Science.gov (United States)

    Michaljaničová, I.; Slepička, P.; Rimpelová, S.; Slepičková Kasálková, N.; Švorčík, V.

    2016-05-01

    In this work, we describe ripple and dot nanopatterning of three different aromatic polymer substrates by KrF excimer laser treatment. The conditions for regular structures were established by laser fluence and number of pulses. Subsequently, the influence of the angle of incidence of a laser beam was investigated. We have chosen polyethersulfone (PES), polyetherimide (PEI) and polyetheretherketone (PEEK) as substrates for modification since they are thermally, chemically and mechanically resistant aromatic polymers with high absorption coefficients at excimer laser wavelength. As a tool of wettability investigation, we used contact angle measurement and for determination of the absorption edge, UV-vis spectroscopy was used. Material surface chemistry was analyzed using FTIR and the changes caused by modification were gained as differential spectra by subtraction of the spectra of non-modified material. Surface morphology was investigated by atomic force microscopy, also the roughness and surface area of modified samples were studied. The scans showed the formation of regular periodic structures, ripples and dots, after treatment by 8 and 16 mJ cm-2 and 6000 pulses. Further, initial in vitro cytocompatibility tests were performed using U-2 OS cell line growing on PES samples subjected to scanning electron microscopy analysis. The structure formation mapping contributes strongly to development of new applications using nanostructured polymers, e.g. in tissue engineering or in combination with metallization in selected electronics and metamaterials construction.

  3. Preliminary assessment of the radiological protection aspects of disposal of high-level waste in geologic formations

    International Nuclear Information System (INIS)

    The purpose of this study is to carry out a preliminary assessment of the potential radiological consequences of disposing of vitrified high-level radioactive waste in geologic formations. The events which could lead to the release of radioactivity from a geologic repository are reviewed and ingress of ground-water is identified as the principal mechanism by which radioactivity may be transported back to the biosphere. A mathematical model of radionuclide migration with ground-water is used to predict possible rates of release of radioactivity into fresh water from a hypothetical repository containing all the high-level waste which may be generated in the UK up to the year 2000. The individual and collective doses which could be received as a result of man's use of contaminated fresh water are evaluated. The numerical results of the study depend very much on the assumptions made and cannot be used to draw any detailed conclusions. The main result is the identification of areas where further studies are required in order to carry out a full evaluation of this disposal option. (author)

  4. Simple Model of Spreading of Two Epidemics: Phase Transition and Pattern Formation

    International Nuclear Information System (INIS)

    Spreading of two different diseases in small world network, with restriction that an individual can be ill only with one disease in the same time, is investigated in the frame of SIRS model. It was found that in the special range of control parameters the presence of the second disease can significantly decrease the number of individuals, who passed the first disease. The speed of propagation of the wave-front of the epidemic is calculated analytically and good agreement with numerical calculation is obtained. The influence of additional long range connections on epidemic spreading and phase transition is investigated. It is found that in special conditions spatio-temporal patterns, in particular spiral waves, can emerge in the system. Small number of additional long-range connections increases the probability of emerging of spiral waves. (author)

  5. The Formation, Movement and Evolution Pattern of Jurassic Terrestrial Deposit Basin in Daqingshan Region

    Institute of Scientific and Technical Information of China (English)

    PENG Xiangdong; XU Zhongyuan; LIU Zhenghong

    2001-01-01

    The authors have reconstructed the original shape of Jurassic basin in Daqingshan region and discussed the movement and evolution pattern of the basin. The basin developed between Paleozoic strata sliver and metamorphic rock sliver in late stage of Early Jurassic and extended in latitude direction. The palco - terrene of the basin is higher in north and west than south and east. The boundary of basin is largest in Changhangou stage of Middle Jurassic. After middle Jurassic, the region took place Yenshan movement, and then the basin changed obviously from weakly extending environment of Early and Middle Jurassic to extruding environment of late Jurassic, and the paleoclimate of the basin changed from warmth and wetness to dry. The basin finished the evolution history in the late stage of Late Jurassic with the development of thrust.

  6. The Rim101p/PacC pathway and alkaline pH regulate pattern formation in yeast colonies.

    Science.gov (United States)

    Piccirillo, Sarah; White, Melissa G; Murphy, Jeffrey C; Law, Douglas J; Honigberg, Saul M

    2010-03-01

    Multicellular organisms utilize cell-to-cell signals to build patterns of cell types within embryos, but the ability of fungi to form organized communities has been largely unexplored. Here we report that colonies of the yeast Saccharomyces cerevisiae formed sharply divided layers of sporulating and nonsporulating cells. Sporulation initiated in the colony's interior, and this region expanded upward as the colony matured. Two key activators of sporulation, IME1 and IME2, were initially transcribed in overlapping regions of the colony, and this overlap corresponded to the initial sporulation region. The development of colony sporulation patterns depended on cell-to-cell signals, as demonstrated by chimeric colonies, which contain a mixture of two strains. One such signal is alkaline pH, mediated through the Rim101p/PacC pathway. Meiotic-arrest mutants that increased alkali production stimulated expression of an early meiotic gene in neighboring cells, whereas a mutant that decreased alkali production (cit1Delta) decreased this expression. Addition of alkali to colonies accelerated the expansion of the interior region of sporulation, whereas inactivation of the Rim101p pathway inhibited this expansion. Thus, the Rim101 pathway mediates colony patterning by responding to cell-to-cell pH signals. Cell-to-cell signals coupled with nutrient gradients may allow efficient spore formation and spore dispersal in natural environments. PMID:20038633

  7. Effect of TMAH Etching Duration on the Formation of Silicon Nano wire Transistor Patterned by AFM Nano lithography

    International Nuclear Information System (INIS)

    Atomic force microscopy (AFM) lithography was applied to produce nano scale pattern for silicon nano wire transistor fabrication. This technique takes advantage of imaging facility of AFM and the ability of probe movement controlling over the sample surface to create nano patterns. A conductive AFM tip was used to grow the silicon oxide nano patterns on silicon on insulator (SOI) wafer. The applied tip-sample voltage and writing speed were well controlled in order to form pre-designed silicon oxide nano wire transistor structures. The effect of tetra methyl ammonium hydroxide (TMAH) etching duration on the oxide covered silicon nano wire transistor structure has been investigated. A completed silicon nano wire transistor was obtained by removing the oxide layer via hydrofluoric acid etching process. The fabricated silicon nano wire transistor consists of a silicon nano wire that acts as a channel with source and drain pads. A lateral gate pad with a nano wire head was fabricated very close to the channel in the formation of transistor structures. (author)

  8. Expression patterns and subcellular localization of carbonic anhydrases are developmentally regulated during tooth formation.

    Directory of Open Access Journals (Sweden)

    Claes-Göran Reibring

    Full Text Available Carbonic anhydrases (CAs play fundamental roles in several physiological events, and emerging evidence points at their involvement in an array of disorders, including cancer. The expression of CAs in the different cells of teeth is unknown, let alone their expression patterns during odontogenesis. As a first step towards understanding the role of CAs during odontogenesis, we used immunohistochemistry, histochemistry and in situ hybridization to reveal hitherto unknown dynamic distribution patterns of eight CAs in mice. The most salient findings include expression of CAII/Car2 not only in maturation-stage ameloblasts (MA but also in the papillary layer, dental papilla mesenchyme, odontoblasts and the epithelial rests of Malassez. We uncovered that the latter form lace-like networks around incisors; hitherto these have been known to occur only in molars. All CAs studied were produced by MA, however CAIV, CAIX and CARPXI proteins were distinctly enriched in the ruffled membrane of the ruffled MA but exhibited a homogeneous distribution in smooth-ended MA. While CAIV, CAVI/Car6, CAIX, CARPXI and CAXIV were produced by all odontoblasts, CAIII distribution displayed a striking asymmetry, in that it was virtually confined to odontoblasts in the root of molars and root analog of incisors. Remarkably, from initiation until near completion of odontogenesis and in several other tissues, CAXIII localized mainly in intracellular punctae/vesicles that we show to overlap with LAMP-1- and LAMP-2-positive vesicles, suggesting that CAXIII localizes within lysosomes. We showed that expression of CAs in developing teeth is not confined to cells involved in biomineralization, pointing at their participation in other biological events. Finally, we uncovered novel sites of CA expression, including the developing brain and eye, the olfactory epithelium, melanoblasts, tongue, notochord, nucleus pulposus and sebaceous glands. Our study provides important information for

  9. Three-dimensional pattern formation in suspensions of swimming micro-organisms

    CERN Document Server

    Saintillan, David

    2009-01-01

    Suspensions of self-propelled particles, such as swimming micro-organisms, are known to undergo complex dynamics as a result of hydrodynamic interactions. This fluid dynamics video presents a numerical simulation of such a suspension, based on a kinetic theory recently developed by Saintillan and Shelley (Physics of Fluids, 20, 123403, 2008). Starting from a nearly uniform and isotropic initial distribution, our simulations show the formation of strong density fluctuations, which merge and break up in time in a quasiperiodic fashion. These fluctuations are found to occur on the size of the simulation box, in agreement with a prediction from a linear stability analysis. In addition, the dynamics are characterized by complex chaotic flow fields, which result in efficient fluid mixing.

  10. Theoretical aspects of solid state reactions in a mixed particulate ensemble and kinetics of lead zirconate formation

    International Nuclear Information System (INIS)

    A theoretical analysis was carried out to estimate the quasi-steady-state external mass transport by lattice, surface and gaseous diffusion in terms of the stereologically measurable microstructural parameters of a mixed powder compact. It was shown that the gaseous transport can be described by a single dimensionless quantity termed sublimation transport modulus. Using these equations, the relative importance of the alternate external transport modes can be evaluated. Experimental work determined the reaction isotherms for the formation of lead zirconate from yellow PbO and monoclinic zirconia between 7100C to 8100C for two zirconia size distributions. The larger zirconia showed diffusion controlled shrinking core kinetics up to about 90 percent reaction while the smaller zirconia indicated a diffusion controlled spherical growth of up to 85 percent reaction after an instantaneous nucleation at a limited number of sites. The difference was attributed to the differences in the mixing time and not to the particulate sizes. It was observed that for the same size range, a longer mixing operation gave a better dispersion of reactants which resulted in a higher nucleation site density required for a shrinking core type of product morphology and faster kinetics. A microprobe profile analysis of partially reacted particles confirmed that for the shorter mixing period, reaction resultedin a nucleation-growth-impingement type of morphology. The activation energy as calculated from the nucleation-growth model fit to the data was 138 Kcal/mole which is close to 131 Kcal/mole reported for Pb2+ diffusion in PbZrO3. Approximate calculations show that the gaseous external mass flux of PbO was negligible compared to the lattice or surface diffusive flux

  11. Patterns of growth and tract formation during the early development of secondary lineages in the Drosophila larval brain.

    Science.gov (United States)

    Lovick, Jennifer K; Kong, Angel; Omoto, Jaison J; Ngo, Kathy T; Younossi-Hartenstein, Amelia; Hartenstein, Volker

    2016-04-01

    The Drosophila brain consists of a relatively small number of invariant, genetically determined lineages which provide a model to study the relationship between gene function and neuronal architecture. In following this long-term goal, we reconstruct the morphology (projection pattern and connectivity) and gene expression patterns of brain lineages throughout development. In this article, we focus on the secondary phase of lineage morphogenesis, from the reactivation of neuroblast proliferation in the first larval instar to the time when proliferation ends and secondary axon tracts have fully extended in the late third larval instar. We have reconstructed the location and projection of secondary lineages at close (4 h) intervals and produced a detailed map in the form of confocal z-projections and digital three-dimensional models of all lineages at successive larval stages. Based on these reconstructions, we could compare the spatio-temporal pattern of axon formation and morphogenetic movements of different lineages in normal brain development. In addition to wild type, we reconstructed lineage morphology in two mutant conditions. (1) Expressing the construct UAS-p35 which rescues programmed cell death we could systematically determine which lineages normally lose hemilineages to apoptosis. (2) so-Gal4-driven expression of dominant-negative EGFR ablated the optic lobe, which allowed us to conclude that the global centrifugal movement normally affecting the cell bodies of lateral lineages in the late larva is causally related to the expansion of the optic lobe, and that the central pattern of axonal projections of these lineages is independent of the presence or absence of the optic lobe. PMID:26178322

  12. Inactivation of the Huntington's disease gene (Hdh impairs anterior streak formation and early patterning of the mouse embryo

    Directory of Open Access Journals (Sweden)

    Conlon Ronald A

    2005-08-01

    Full Text Available Abstract Background Huntingtin, the HD gene encoded protein mutated by polyglutamine expansion in Huntington's disease, is required in extraembryonic tissues for proper gastrulation, implicating its activities in nutrition or patterning of the developing embryo. To test these possibilities, we have used whole mount in situ hybridization to examine embryonic patterning and morphogenesis in homozygous Hdhex4/5 huntingtin deficient embryos. Results In the absence of huntingtin, expression of nutritive genes appears normal but E7.0–7.5 embryos exhibit a unique combination of patterning defects. Notable are a shortened primitive streak, absence of a proper node and diminished production of anterior streak derivatives. Reduced Wnt3a, Tbx6 and Dll1 expression signify decreased paraxial mesoderm and reduced Otx2 expression and lack of headfolds denote a failure of head development. In addition, genes initially broadly expressed are not properly restricted to the posterior, as evidenced by the ectopic expression of Nodal, Fgf8 and Gsc in the epiblast and T (Brachyury and Evx1 in proximal mesoderm derivatives. Despite impaired posterior restriction and anterior streak deficits, overall anterior/posterior polarity is established. A single primitive streak forms and marker expression shows that the anterior epiblast and anterior visceral endoderm (AVE are specified. Conclusion Huntingtin is essential in the early patterning of the embryo for formation of the anterior region of the primitive streak, and for down-regulation of a subset of dynamic growth and transcription factor genes. These findings provide fundamental starting points for identifying the novel cellular and molecular activities of huntingtin in the extraembryonic tissues that govern normal anterior streak development. This knowledge may prove to be important for understanding the mechanism by which the dominant polyglutamine expansion in huntingtin determines the loss of neurons in

  13. Distinct patterns of notochord mineralization in zebrafish coincide with the localization of Osteocalcin isoform 1 during early vertebral centra formation

    Directory of Open Access Journals (Sweden)

    Bensimon-Brito Anabela

    2012-10-01

    Full Text Available Abstract Background In chondrichthyans, basal osteichthyans and tetrapods, vertebral bodies have cartilaginous anlagen that subsequently mineralize (chondrichthyans or ossify (osteichthyans. Chondrocytes that form the vertebral centra derive from somites. In teleost fish, vertebral centrum formation starts in the absence of cartilage, through direct mineralization of the notochord sheath. In a second step, the notochord is surrounded by somite-derived intramembranous bone. In several small teleost species, including zebrafish (Danio rerio, even haemal and neural arches form directly as intramembranous bone and only modified caudalmost arches remain cartilaginous. This study compares initial patterns of mineralization in different regions of the vertebral column in zebrafish. We ask if the absence or presence of cartilaginous arches influences the pattern of notochord sheath mineralization. Results To reveal which cells are involved in mineralization of the notochord sheath we identify proliferating cells, we trace mineralization on the histological level and we analyze cell ultrastructure by TEM. Moreover, we localize proteins and genes that are typically expressed by skeletogenic cells such as Collagen type II, Alkaline phosphatase (ALP and Osteocalcin (Oc. Mineralization of abdominal and caudal vertebrae starts with a complete ring within the notochord sheath and prior to the formation of the bony arches. In contrast, notochord mineralization of caudal fin centra starts with a broad ventral mineral deposition, associated with the bases of the modified cartilaginous arches. Similar, arch-related, patterns of mineralization occur in teleosts that maintain cartilaginous arches throughout the spine. Throughout the entire vertebral column, we were able to co-localize ALP-positive signal with chordacentrum mineralization sites, as well as Collagen II and Oc protein accumulation in the mineralizing notochord sheath. In the caudal fin region, ALP and

  14. Pattern formation in a growing bacterial colony facilitated by extra-cellular polymeric substances

    Science.gov (United States)

    Ghosh, Pushpita; Mondal, Jagannath; Ben-Jacob, Eshel; Levine, Herbert

    2015-03-01

    Self-organization in bacterial colony is quite pervasive and diverse phenomena. Bacteria are known to self-organize into multicellular communities, commonly known as biofilms, in which microbial cells live in close association with a solid surface and are embedded in a self-produced extracellular polymeric substances(EPS). In such dense systems mechanical interactions among the structural components can be expected to significantly contribute to the morphological properties. By a simple particle-based simulation model of nonmotile rod-shaped bacterial cells and EPS secreted in a growing colony, we investigate how the combined mechanical effects can give rise naturally spatial heterogeneity observed in a biofilm. In our individual-based simulation model all the components interact mechanically via repulsive forces by pushing each other away as bacterial cells grow and divide consuming diffusing nutrient and produce EPS. We show that mechanical interactions control the collective behavior of the system, particularly, we show that the presence of non-adsorbing EPS leads spontaneous aggregation of bacterial cells by depletion attraction and generates phase separated patterns in a nonequilibrium growing colony.

  15. Inherent structures of phase-separating binary mixtures: nucleation, spinodal decomposition, and pattern formation.

    Science.gov (United States)

    Sarkar, Sarmistha; Bagchi, Biman

    2011-03-01

    An energy landscape view of phase separation and nonideality in binary mixtures is developed by exploring their potential energy landscape (PEL) as functions of temperature and composition. We employ molecular dynamics simulations to study a model that promotes structure breaking in the solute-solvent parent binary liquid, at low temperatures. The PEL of the system captures the potential energy distribution of the inherent structures (IS) of the system and is obtained by removing the kinetic energy (including that of intermolecular vibrations). The broader distribution of the inherent structure energy for structure breaking liquid than that of the structure making liquid demonstrates the larger role of entropy in stabilizing the parent liquid of the structure breaking type of binary mixtures. At high temperature, although the parent structure of the structure breaking binary mixture is homogenous, the corresponding inherent structure is found to be always phase separated, with a density pattern that exhibits marked correlation with the energy of its inherent structure. Over a broad range of intermediate inherent structure energy, bicontinuous phase separation prevails with interpenetrating stripes as signatures of spinodal decomposition. At low inherent structure energy, the structure is largely phase separated with one interface where as at high inherent structure energy we find nucleation type growth. Interestingly, at low temperature, the average inherent structure energy () exhibits a drop with temperature which signals the onset of crystallization in one of the phases while the other remains in the liquid state. The nonideal composition dependence of viscosity is anticorrelated with average inherent structure energy. PMID:21517506

  16. Inherent structures of phase-separating binary mixtures: Nucleation, spinodal decomposition, and pattern formation

    Science.gov (United States)

    Sarkar, Sarmistha; Bagchi, Biman

    2011-03-01

    An energy landscape view of phase separation and nonideality in binary mixtures is developed by exploring their potential energy landscape (PEL) as functions of temperature and composition. We employ molecular dynamics simulations to study a model that promotes structure breaking in the solute-solvent parent binary liquid, at low temperatures. The PEL of the system captures the potential energy distribution of the inherent structures (IS) of the system and is obtained by removing the kinetic energy (including that of intermolecular vibrations). The broader distribution of the inherent structure energy for structure breaking liquid than that of the structure making liquid demonstrates the larger role of entropy in stabilizing the parent liquid of the structure breaking type of binary mixtures. At high temperature, although the parent structure of the structure breaking binary mixture is homogenous, the corresponding inherent structure is found to be always phase separated, with a density pattern that exhibits marked correlation with the energy of its inherent structure. Over a broad range of intermediate inherent structure energy, bicontinuous phase separation prevails with interpenetrating stripes as signatures of spinodal decomposition. At low inherent structure energy, the structure is largely phase separated with one interface where as at high inherent structure energy we find nucleation type growth. Interestingly, at low temperature, the average inherent structure energy () exhibits a drop with temperature which signals the onset of crystallization in one of the phases while the other remains in the liquid state. The nonideal composition dependence of viscosity is anticorrelated with average inherent structure energy.

  17. Dependence of crystallite formation and preferential backbone orientations on the side chain pattern in PBDTTPD polymers

    KAUST Repository

    El Labban, Abdulrahman

    2014-11-26

    (Figure Presented) Alkyl substituents appended to the π-conjugated main chain account for the solution-processability and film-forming properties of most π-conjugated polymers for organic electronic device applications, including field-effect transistors (FETs) and bulk-heterojunction (BHJ) solar cells. Beyond film-forming properties, recent work has emphasized the determining role that side-chain substituents play on polymer self-assembly and thin-film nanostructural order, and, in turn, on device performance. However, the factors that determine polymer crystallite orientation in thin-films, implying preferential backbone orientation relative to the device substrate, are a matter of some debate, and these structural changes remain difficult to anticipate. In this report, we show how systematic changes in the side-chain pattern of poly(benzo[1,2-b:4,5-b′]dithiophene-alt-thieno[3,4-c]pyrrole-4,6-dione) (PBDTTPD) polymers can (i) influence the propensity of the polymer to order in the π-stacking direction, and (ii) direct the preferential orientation of the polymer crystallites in thin films (e.g., "face-on" vs "edge-on"). Oriented crystallites, specifically crystallites that are well-ordered in the π-stacking direction, are believed to be a key contributor to improved thin-film device performance in both FETs and BHJ solar cells.

  18. Indium segregation during III–V quantum wire and quantum dot formation on patterned substrates

    International Nuclear Information System (INIS)

    We report a model for metalorganic vapor-phase epitaxy on non-planar substrates, specifically V-grooves and pyramidal recesses, which we apply to the growth of InGaAs nanostructures. This model—based on a set of coupled reaction-diffusion equations, one for each facet in the system—accounts for the facet-dependence of all kinetic processes (e.g., precursor decomposition, adatom diffusion, and adatom lifetimes) and has been previously applied to account for the temperature-, concentration-, and temporal-dependence of AlGaAs nanostructures on GaAs (111)B surfaces with V-grooves and pyramidal recesses. In the present study, the growth of In0.12Ga0.88As quantum wires at the bottom of V-grooves is used to determine a set of optimized kinetic parameters. Based on these parameters, we have modeled the growth of In0.25Ga0.75As nanostructures formed in pyramidal site-controlled quantum-dot systems, successfully producing a qualitative explanation for the temperature-dependence of their optical properties, which have been reported in previous studies. Finally, we present scanning electron and cross-sectional atomic force microscopy images which show previously unreported facetting at the bottom of the pyramidal recesses that allow quantum dot formation

  19. Indium segregation during III–V quantum wire and quantum dot formation on patterned substrates

    Energy Technology Data Exchange (ETDEWEB)

    Moroni, Stefano T.; Dimastrodonato, Valeria; Chung, Tung-Hsun; Juska, Gediminas; Gocalinska, Agnieszka; Pelucchi, Emanuele [Tyndall National Institute, “Lee Maltings,” University College Cork, Cork (Ireland); Vvedensky, Dimitri D. [The Blackett Laboratory, Imperial College London, London SW7 2AZ (United Kingdom)

    2015-04-28

    We report a model for metalorganic vapor-phase epitaxy on non-planar substrates, specifically V-grooves and pyramidal recesses, which we apply to the growth of InGaAs nanostructures. This model—based on a set of coupled reaction-diffusion equations, one for each facet in the system—accounts for the facet-dependence of all kinetic processes (e.g., precursor decomposition, adatom diffusion, and adatom lifetimes) and has been previously applied to account for the temperature-, concentration-, and temporal-dependence of AlGaAs nanostructures on GaAs (111)B surfaces with V-grooves and pyramidal recesses. In the present study, the growth of In{sub 0.12}Ga{sub 0.88}As quantum wires at the bottom of V-grooves is used to determine a set of optimized kinetic parameters. Based on these parameters, we have modeled the growth of In{sub 0.25}Ga{sub 0.75}As nanostructures formed in pyramidal site-controlled quantum-dot systems, successfully producing a qualitative explanation for the temperature-dependence of their optical properties, which have been reported in previous studies. Finally, we present scanning electron and cross-sectional atomic force microscopy images which show previously unreported facetting at the bottom of the pyramidal recesses that allow quantum dot formation.

  20. Czech alien flora and the historical pattern of its formation: what came first to Central Europe?

    Science.gov (United States)

    Pysek, Petr; Sádlo, Jirí; Mandák, Bohumil; Jarosík, Vojtech

    2003-03-01

    Temporal patterns of immigration to the country were analysed using 668 alien species in the flora of the Czech Republic for which the dates of the first record were available (64.8% of the total number of 1031 so-called neophytes, i.e. aliens introduced after the year 1500). After a period of initial slow increase lasting to the 1840s, the accumulation of neophytes over time could be best fitted by a linear model that explained 97% of the variance. The intensity of floristic research, which varied between periods, did not significantly affect the overall increase in the number of aliens. The effect of species traits on the year of introduction was evaluated, with continent of origin, introduction type (deliberate or accidental), life history, Grime's life strategy, onset of flowering, mode of dispersal and propagule size as explanatory variables. Species of European origin and CSR strategists arrived earlier than those with other origins and strategies. Deliberately introduced species appeared earlier than accidental arrivals, and those cultivated for utilitary reasons on average arrived earlier than ornamentals. Species capable of early flowering were remarkably more prevalent among early newcomers. A separate analysis of accidentally introduced American species also identified life history as a significant predictor of immigration time, with annuals being introduced earlier than biennials and perennials. The data contribute to an understanding of a crucial stage of the invasion process that has received little attention in the literature. The model "early alien" to Central Europe is a European species with a CSR strategy deliberately brought for cultivation as a utilitary plant. Once it escaped from cultivation, its establishment in the wild was favoured by its ability to flower early and, therefore, complete the life cycle. PMID:12647111

  1. A model for oscillations and pattern formation in protoplasmic droplets of Physarum polycephalum

    Science.gov (United States)

    Radszuweit, M.; Engel, H.; Bär, M.

    2010-12-01

    A mechano-chemical model for the spatiotemporal dynamics of free calcium and the thickness in protoplasmic droplets of the true slime mold Physarum polycephalum is derived starting from a physiologically detailed description of intracellular calcium oscillations proposed by Smith and Saldana (Biopys. J. 61, 368 (1992)). First, we have modified the Smith-Saldana model for the temporal calcium dynamics in order to reproduce the experimentally observed phase relation between calcium and mechanical tension oscillations. Then, we formulate a model for spatiotemporal dynamics by adding spatial coupling in the form of calcium diffusion and advection due to calcium-dependent mechanical contraction. In another step, the resulting reaction-diffusion model with mechanical coupling is simplified to a reaction-diffusion model with global coupling that approximates the mechanical part. We perform a bifurcation analysis of the local dynamics and observe a Hopf bifurcation upon increase of a biochemical activity parameter. The corresponding reaction-diffusion model with global coupling shows regular and chaotic spatiotemporal behaviour for parameters with oscillatory dynamics. In addition, we show that the global coupling leads to a long-wavelength instability even for parameters where the local dynamics possesses a stable spatially homogeneous steady state. This instability causes standing waves with a wavelength of twice the system size in one dimension. Simulations of the model in two dimensions are found to exhibit defect-mediated turbulence as well as various types of spiral wave patterns in qualitative agreement with earlier experimental observation by Takagi and Ueda (Physica D, 237, 420 (2008)).

  2. Leaching patterns and secondary phase formation during unsaturated leaching of UO2 at 90 degrees C

    International Nuclear Information System (INIS)

    Experiments are being conducted that examine the reaction of UO2 with dripping oxygenated ground water at 90 degrees C. The experiments are designed to identify secondary phases formed during UO2 alteration, evaluate parameters controlling U release, and act as scoping tests for studies with spent fuel. This study is the first of its kind that examines the alteration of UO2 under unsaturated conditions expected to exist at the proposed Yucca Mountain repository site. Results suggest the UO2 matrix will readily react within a few months after being exposed to simulated Yucca Mountain conditions. A pulse of rapid U release, combined with the formation of dehydrated schoepite on the UO2 surface, characterizes the reaction between one to two years. Rapid dissolution of intergrain boundaries and spallation of UO2 granules appears to be responsible for much of the U released. Differential release of the UO2 granules may be responsible for much of the variation observed between duplicate experiments. Less than 5 wt % of the released U remains in solution or in a suspended form, while the remaining settles out of solution as fine particles or is reprecipitated as secondary phases. Subsequent to the pulse period, U release rates decline and a more stable assemblage of uranyl silicate phases are formed by incorporating cations from the ground water leachant. Uranophane, boltwoodite, and sklodowskite appear as the final solubility limiting phases that form in these tests. This observed paragenetic sequence (from uraninite to schoepite-type phases to uranyl silicates) is identical to those observed in weathered zones of natural uraninite occurrences. The combined results indicate that the release of radionuclides from spent fuel may not be limited by U solubility constraints, but that spallation of particulate matter may be an important, if not the dominant release mechanism affecting release

  3. Nano-scale pattern formation on the surface of HgCdTe produced by ion bombardment

    Energy Technology Data Exchange (ETDEWEB)

    Smirnov, A.B.; Gudymenko, A.I.; Kladko, V.P.; Korchevyi, A.A.; Savkina, R.K.; Sizov, F.F.; Udovitska, R.S. [V. Lashkaryov Institute of Semiconductor Physics, NAS of Ukraine, Kiev (Ukraine)

    2015-08-15

    Presented in this work are the results concerning formation of nano-scale patterns on the surface of a ternary compound Hg{sub 1-x}Cd{sub x}Te (x ∝ 0.223). Modification of this ternary chalcogenide semiconductor compound was performed using the method of oblique-incidence ion bombardment with silver ions, which was followed by low-temperature treatment. The energy and dose of implanted ions were 140 keV and 4.8 x 10{sup 13} cm{sup -2}, respectively. Atomic force microscopy methods were used for the surface topography characterization. The structural properties of MCT-based structure was analyzed using double and triple crystal X-ray diffraction to monitor the disorder and strain of the implanted region as a function of processing conditions. (copyright 2015 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  4. Pattern formation and phase behavior in PS-B-Si containing block copolymer thin film

    Science.gov (United States)

    Hsieh, I.-Fan

    Since the top-down approaches, such as the extremely ultraviolet (EUV) technique and the high-index fluid-based immersion ArF lithography, may be cover one or two generations, these lithography technologies are getting more severe for the feature size scaling down to sub 10 nm. The directed self-assembly technology of block copolymers is one of the candidates for next generation lithography which can afford feature sizes that are dictated by the molecular weight of the block copolymer and are typically 15 to 30 nm. Directed self-assembly of block copolymers has attracted attention as a technology to extend photoresist-based lithography to smaller dimensions. It has been demonstrated that the directed self assembly of block copolymer offers a new route to perfect nanolithographic pattering at sub-50 nm length scale with molecular scale precision. For application in electronic media, it requires large-area, long-range ordered structures, which is both a kinetic and thermodynamic problem and requires subtle balance of various parameters and processing conditions. So far, block copolymer thin films have already achieved certain success, mainly with higher molecular weights and a feature size of ˜30 nm. Several challenges still remain, such as (a) the generation of long-range ordered structure with smaller feature sizes (domain size block copolymers have emerged as next generation block copolymers for nanolithography. Their films can be processed under dry conditions using oxygen plasma to produce inorganic, silica patterns which enables their integration into existing device fabrication. Also, the large thermodynamic incompatibility of silicon-containing polymers with other organic polymers is favorable for patterns with small domains sizes, large correlation lengths, and low interfacial roughness. In PS-b-PDMS system, a solvent-induced spherical structure was obtained and stabilized by preparing both the bulk and thin film from propylene glycol methyl ether acetate

  5. Patterns of methane-related carbonate formation in the black sea

    Science.gov (United States)

    Reitner, J.; Peckmann, J.; Reimer, A.; Thiel, V.

    2003-04-01

    Methane seeps on the northwestern Black Sea shelf were investigated during the GHOSTDABS expedition in 2001. Seep areas close to the Dniepr Canyon are sites of intense carbonate formation. In anoxic waters, at depths between 200 and 400 m, we found three different modes of seepage-induced carbonate precipitation. The most spectacular type comprises up to 4 m high Ca-carbonate towers flushed by methane gas (type 1). These buildups are constructed of cm to dm-scale calcified hollow spheres which are made and later surrounded by microbial mats. At the base of these microbial mats the spheres are stabilized by a continuous rim of carbonate cement. At a later stage, the fragile spheres are entirely cemented by fibrous aragonite and Mg calcite. The towers harbour a highly diverse microbial community, which are, at least in part, based on the anaerobic oxidation of methane (AOM). A second variety of methane-derived carbonates was observed in the vicinity of the large carbonate towers and consists of lenticular concretions growing within the sediment (type 2). The concretions are up to several decimeters in size and consist of Mg calcite crystal aggregates that progressively fuse together, thereby incorporating ambient sedimentary matter. Associated biofilms surrounding the concretions clearly show AOM related populations but exhibit a different community structure and a smaller microbial diversity than type 1 carbonates. Type 3 encompasses background sediments irregularly cemented with microcrystalline Mg-calcite (automicrite). These precipitates may show very thin internal biofilms, and are further characterized by small, “birds eye”-type cavities. These cavities appear to arise from ascending gas bubbles, and are partly cemented by granular to blocky Mg calcites. The internal surfaces are frequently coated by thin biofilms resembling those found associated with type 2 concretions. All studied Ca-carbonates have low d13C values (-25 to -35 permille vs. PDB) and show

  6. Neotectonic formation of drainage patterns and their palaeohydrological implications for the Okwa River catchment, Botswana

    Science.gov (United States)

    Hartmann, Kai; Schmidt, Mareike; Shemang, Elisha; Zhang, Shuping; Frank, Riedel

    2014-05-01

    Large inter- and intramontane endorheic basins provide long term archives of environmental change, often integrating regional to continental climate driven process dynamics of huge drainage systems. On one hand the large-scale integration can be regarded as an advantage by averaging small-scale variations of either local hydrological peculiarities or random triggered drainage behaviour (e.g. internal thresholds, tectonics, etc.) and thus just recording atmospheric circulation pattern up to hemispherical scales with millennial resolution. Otherwise, with increasing basin size the process dynamic and their response system along one or more sediment cascades often become a complexity resulting in crucial problems of sedimentological archive interpretations by e.g. signal interference, equifinality or even multiple reworking. Therefore, studies of geomorphological or hydrological response processes and ecological adaption can only be undertaken on sub-catchment scale considering process dynamics along pathways. For southern-hemispheric palaeoclimate reconstruction of land-ocean linkages, Makgadikgadi Basin - as the largest (c. 37,000 km2) and deepest depression in the middle Kalahari - provides a fluvio-lacustrine archive in high-continental position since at least 300 kyr BP. Recent studies suggest a mega-lake high-stand within the basin for the Last Glacial Maximum (LGM) For the hydrological persistence of the lake for about 6 kyrs, the since Heinrich Event 1 (17-16 ka) inactive Okwa River seems to play a key role indicating a northward-shift of the winter rainfall zone. However, beside some dating of exposed shell bearing sediments at the river mouth, a thorough investigation of the c. 129,000 km2 drainage system is missing. Our presentation aims to point out the linkages between neotectonic activity and sediment transport. The combination of adaptive DEM-filter and multispectral remote sensing data reveals obvious traps (of neotectonic origin) of small temporary

  7. Sp6 and Sp8 transcription factors control AER formation and dorsal-ventral patterning in limb development.

    Directory of Open Access Journals (Sweden)

    Endika Haro

    2014-08-01

    Full Text Available The formation and maintenance of the apical ectodermal ridge (AER is critical for the outgrowth and patterning of the vertebrate limb. The induction of the AER is a complex process that relies on integrated interactions among the Fgf, Wnt, and Bmp signaling pathways that operate within the ectoderm and between the ectoderm and the mesoderm of the early limb bud. The transcription factors Sp6 and Sp8 are expressed in the limb ectoderm and AER during limb development. Sp6 mutant mice display a mild syndactyly phenotype while Sp8 mutants exhibit severe limb truncations. Both mutants show defects in AER maturation and in dorsal-ventral patterning. To gain further insights into the role Sp6 and Sp8 play in limb development, we have produced mice lacking both Sp6 and Sp8 activity in the limb ectoderm. Remarkably, the elimination or significant reduction in Sp6;Sp8 gene dosage leads to tetra-amelia; initial budding occurs, but neither Fgf8 nor En1 are activated. Mutants bearing a single functional allele of Sp8 (Sp6-/-;Sp8+/- exhibit a split-hand/foot malformation phenotype with double dorsal digit tips probably due to an irregular and immature AER that is not maintained in the center of the bud and on the abnormal expansion of Wnt7a expression to the ventral ectoderm. Our data are compatible with Sp6 and Sp8 working together and in a dose-dependent manner as indispensable mediators of Wnt/βcatenin and Bmp signaling in the limb ectoderm. We suggest that the function of these factors links proximal-distal and dorsal-ventral patterning.

  8. Nominal aspect

    DEFF Research Database (Denmark)

    Rijkhoff, Jan

    1991-01-01

    In a general way the notion 'aspect' can be defined as the way in which a property or relation is represented in some dimension. Two kinds of aspect can be distinguished: verbal and nominal aspect. The study of verbal aspect has a long tradition, but nominal aspect has only been introduced recent......' (which will be analysed as nominal aspect markers below), (ii) noun-incorporation, and (iii) predicate nouns....

  9. Facies pattern of the middle Permian Barren Measures Formation, Jharia basin, India: The sedimentary response to basin tectonics

    Indian Academy of Sciences (India)

    Prabir Dasgupta

    2005-06-01

    In the Lower Gondwana succession of the Jharia basin of eastern India, the Barren Measures Formation is characterized by the cyclic disposition of fine-grained lacustrine deposits and relatively coarse-grained fluvial deposits. The cyclic variation in the rate of coarse clastic input is attributed to the sedimentary response to basin tectonics. The sandstone–shale alternations of the Barren Measures succession can be correlated with the tectonic cyclothems developed on the hangingwall dip-slope and adjoining trough in a continental half-graben setting. Enhancement of the gradient of the hangingwall dip-slope during reactivation of the basin margin faults led to progradation of the existing fluvial system towards the half-graben trough and deposition of the coarser clastics on the fine-grained lacustrine deposits of the trough. Peneplanation of the hangingwall slope and slow increase in the lake level caused lacustrine transgression and retrogration of the fluvial system on the hangingwall block. The fluvial sediments were onlapped by the fine-grained lacustrine deposits. Episodic rejuvenation of the basin margin faults thus caused development of tectonic cyclothem on the hangingwall block. The paleocurrent pattern indicates that a persistent northward paleoslope was maintained during Barren Measures sedimentation. The inferred depositional settings were much more extensive than the present limit of the outcrop. The faults, presently defining the northern limit of the Barren Measures Formation, were possibly emplaced after Barren Measures sedimentation. The final movement along these fault planes caused preservation of the downthrown hangingwall block and the Barren Measures sediments on the footwall block were eroded during subsequent denudation. The Southern Boundary Fault came into existence after the deposition of the Barren Measures sediments.

  10. Methodological aspects of a pattern-scaling approach to produce global fields of monthly means of daily maximum and minimum temperature

    Directory of Open Access Journals (Sweden)

    S. Kremser

    2013-09-01

    Full Text Available A Climate Pattern-Scaling Model (CPSM that simulates global patterns of climate change, for a prescribed emissions scenario, is described. A CPSM works by quantitatively establishing the statistical relationship between a climate variable at a specific location (e.g. daily maximum surface temperature, Tmax and one or more predictor time series (e.g. global mean surface temperature, Tglobal – referred to as the "training" of the CPSM. This training uses a regression model to derive fit-coefficients that describe the statistical relationship between the predictor time series and the target climate variable time series. Once that relationship has been determined, and given the predictor time series for any greenhouse gas (GHG emissions scenario, the change in the climate variable of interest can be reconstructed – referred to as the "application" of the CPSM. The advantage of using a CPSM rather than a typical atmosphere-ocean global climate model (AOGCM is that the predictor time series required by the CPSM can usually be generated quickly using a simple climate model (SCM for any prescribed GHG emissions scenario and then applied to generate global fields of the climate variable of interest. The training can be performed either on historical measurements or on output from an AOGCM. Using model output from 21st century simulations has the advantage that the climate change signal is more pronounced than in historical data and therefore a more robust statistical relationship is obtained. The disadvantage of using AOGCM output is that the CPSM training might be compromised by any AOGCM inadequacies. For the purposes of exploring the various methodological aspects of the CPSM approach, AOGCM output was used in this study to train the CPSM. These investigations of the CPSM methodology focus on monthly mean fields of daily temperature extremes (Tmax and Tmin. Key conclusions are: (1 overall, the CPSM trained on simulations based on the

  11. Connecting Local Environmental Sequences to Global Climate Patterns: Evidence From the Hominin-Bearing Hadar Formation, Ethiopia.

    Science.gov (United States)

    Campisano, C. J.; Feibel, C. S.

    2004-12-01

    Central to the debate surrounding global climate change and Plio-Pleistocene hominin evolution is the degree to which large-scale climate patterns influence low-latitude continental ecosystems and how these global influences can be distinguished from regional tectono-volcanic events and local environmental effects. These isolated factors must then be compared to trends or events in the hominin fossil or archaeological record. The Pliocene Hadar Formation preserves a high-resolution record of hominin paleoenvironments from roughly 3.5 to 2.3 Ma. The chronostratigraphic framework at Hadar, often divisible into sub-50,000 year intervals, provides temporal resolution relevant to evolutionary change within hominins and other taxa. Combined with a high sedimentation rate and abundant faunal remains, this tightly controlled stratigraphic framework allows Hadar to be compared to detailed climate proxies such as marine core isotope, dust, and sapropel records. Preliminary analyses from Hadar suggest that these comparisons can be used to distinguish local versus regional and global environmental change, determine the overall sensitivity of the Hadar system and its fauna to such change, and how this level of sensitively compares to other East African localities. Consistent cycling observed both between and within fluvial and lacustrine depositional environments prior to 2.9 Ma at Hadar appears to be dominantly climatic in nature. However, a significant change in depositional facies after 2.9 Ma to sequences dominated by conglomerate cut-and-fill cycles indicates a strong tectonic signature related to regional developments in the Main Ethiopian Rift (MER). While specific events seen in marine proxy records may have parallels in the Hadar environmental archive, their overall patterns of high versus low variability may be even more relevant. For example, periods of relatively high amplitude climate oscillations between 3.15 and 2.95 Ma may be linked to noted morphological

  12. Fabrication and characterization of high aspect ratio perpendicular patterned information storage media in an Al2O3/GaAs substrate

    OpenAIRE

    Wong, Joyce; Scherer, Axel; Todorovic, Mladen; Schultz, Sheldon

    1999-01-01

    In a new approach, we have fabricated 6:1 aspect ratio magnetic nanocolumns, 60–250 nm in diameter, embedded in a hard aluminum-oxide/gallium-arsenide (Al2O3/GaAs) substrate. The fabrication technique uses the highly selective etching properties of GaAs and AlAs, and highly efficient masking properties of Al2O3 to create small diameter, high aspect ratio holes. Nickel (Ni) is subsequently electroplated into the holes, followed by polishing, which creates a smooth and hard surface appropriate ...

  13. Effect of solvents on the pattern formation in a Belousov-Zhabotinsky reaction embedded into a microemulsion

    Science.gov (United States)

    Dähmlow, Patricia; Vanag, Vladimir K.; Müller, Stefan C.

    2014-01-01

    Using the ferroin- and the bathoferroin-catalyzed Belousov-Zhabotinsky (BZ) reaction embedded in the sodium-bis (2-ethylhexyl) sulfosuccinate (AOT) water-in-oil microemulsion, we observed different patterns occurring in two different solvents, hexane and octane. Turing patterns were found in both solvents with ferroin. They differ in their interaction with coexisting bulk oscillations, such that a new excitation front was formed around the evolving Turing patterns in hexane. However, in octane, the bulk oscillation merged with the evolving patterns, forming a new excitation front, which propagated into two directions: towards the existing patterns and away from them. For the bathoferroin-catalyzed BZ reaction, patterns like dash waves, jumping waves, and bubble waves were found in both solvents having different wavelengths. A curvature dependence of the splitting and merging of dashes was found.

  14. Methodological aspects of a pattern-scaling approach to produce global fields of monthly means of daily maximum and minimum temperature

    OpenAIRE

    S. Kremser; Bodeker, G. E.; Lewis, J.

    2014-01-01

    A Climate Pattern-Scaling Model (CPSM) that simulates global patterns of climate change, for a prescribed emissions scenario, is described. A CPSM works by quantitatively establishing the statistical relationship between a climate variable at a specific location (e.g. daily maximum surface temperature, Tmax) and one or more predictor time series (e.g. global mean surface temperature, Tglobal) – referred to as the "training" of the CPSM. This training uses a regression model ...

  15. Methodological aspects of a pattern-scaling approach to produce global fields of monthly means of daily maximum and minimum temperature

    OpenAIRE

    S. Kremser; Bodeker, G. E.; Lewis, J.

    2013-01-01

    A Climate Pattern-Scaling Model (CPSM) that simulates global patterns of climate change, for a prescribed emissions scenario, is described. A CPSM works by quantitatively establishing the statistical relationship between a climate variable at a specific location (e.g. daily maximum surface temperature, Tmax) and one or more predictor time series (e.g. global mean surface temperature, Tglobal) – referred to as the "training" of the CPSM. This training uses a regression model to derive fit-coef...

  16. Formation of molecular doping patterns in organic-inorganic hybrid films by a capillary electrophoresis doping technique

    International Nuclear Information System (INIS)

    A new technique is proposed for the fabrication of fine patterns of molecular doping in organic-inorganic hybrid materials by the combination of capillary electrophoresis doping (CED) and photolithography. The UV-induced polymerization of - -- C=C - -- bonds in organic groups yields a fine contrast of structures with the desired pattern in organic-inorganic hybrid films, and CED treatment introduces functional molecules only into unirradiated regions to form the doping patterns of molecules inside the films. The fine patterning of rhodamine-6G doping with from 2 to 4 μm resolution is demonstrated in hybrid films of 10 μm thickness.

  17. Higher safety on the job as a result of object formation and behaviour control. Psychological aspects of industrial safety in everyday situations. Mehr Sicherheit im Betrieb durch Objektgestaltung und Verhaltenssteuerung. Zur Psychologie der Arbeitssicherheit im betrieblichen Alltag

    Energy Technology Data Exchange (ETDEWEB)

    Schroeder, O.E.

    1986-01-01

    The study outlines the development of the systems 'man/environment' and 'man/technology' and the human patterns of action. The findings on human patterns of action are then applied to the working environment, especially to objects and behaviour. Standards and habits are named as basic elements of safety at work. Particular interest is taken in the criteria required for the formation of patterns of behaviour, learning processes for acquiring 'safe' habits, and the application of the latter in the field of industrial health. The role of groups as carriers and formers of habits is stressed, and improvisation at work is briefly mentioned. (HSCH).

  18. AspectJ in action practical aspect-oriented programming

    CERN Document Server

    Laddad, Ramnivas

    2003-01-01

    A guide to aspect-oriented programming and the AspectJ language, this book provides code examples that enable quick implementation of functionality in a system. Thorough introductions to AOP and AspectJ will help developers learn or advance their knowledge of AspectJ. Examples of everyday situations in which AspectJ solutions can be applied, such as logging, policy enforcement, resource pooling, business logic, thread-safety, authentication and authorization, and transaction management are provided. In addition, design patterns and idioms are covered, as is business rule implementation. The latest technologies, such as JEES, JAAS, and log4j, are explained and connected with AspectJ.

  19. Pattern Formation and Chaotic Dynamics in a Cross-Flow Catalytic Converter with Kinetics of Detoxification of Exhaust Gases

    OpenAIRE

    Kohout, M.

    2012-01-01

    In this contribution, the range of patterns occurring due to interaction of transport and reactions characteristic of the three-way catalytic converter (TWC) have been explored. We examined whether and how spatiotemporal structures such as spatially nonhomogeneous steady states and travelling waves are produced. Furthermore we found that the system displays a wide variety of chaotic spatiotemporal patterns, which were examined in detail.

  20. Dune field pattern formation and recent transporting winds in the Olympia Undae Dune Field, north polar region of Mars

    Science.gov (United States)

    Ewing, Ryan C.; Peyret, Aymeric-Pierre B.; Kocurek, Gary; Bourke, Mary

    2010-08-01

    High-Resolution Imaging Science Experiment (HiRISE) imagery of the central Olympia Undae Dune Field in the north polar region of Mars shows a reticulate dune pattern consisting of two sets of nearly orthogonal dune crestlines, with apparent slipfaces on the primary crests, ubiquitous wind ripples, areas of coarse-grained wind ripples, and deflated interdune areas. Geomorphic evidence and dune field pattern analysis of dune crest length, spacing, defect density, and orientation indicates that the pattern is complex, representing two constructional generations of dunes. The oldest and best-organized generation forms the primary crestlines and is transverse to circumpolar easterly winds. Gross bed form-normal analysis of the younger pattern of crestlines indicates that it emerged with both circumpolar easterly winds and NE winds and is reworking the older pattern. Mapping of secondary flow fields over the dunes indicates that the most recent transporting winds were from the NE. The younger pattern appears to represent an influx of sediment to the dune field associated with the development of the Olympia Cavi reentrant, with NE katabatic winds channeling through the reentrant. A model of the pattern reformation based upon the reconstructed primary winds and resulting secondary flow fields shows that the development of the secondary pattern is controlled by the boundary condition of the older dune topography.

  1. Temperature control of pattern formation in the Ru(bpy)(3)(2+)-catalyzed BZ-AOT system.

    Science.gov (United States)

    McIlwaine, Rachel; Vanag, Vladimir K; Epstein, Irving R

    2009-03-14

    Using temperature as a control parameter, we observe a transition from stationary Turing patterns at T = 15-20 degrees C to traveling waves at T = 50 degrees C (and above) in the Ru(bpy)(3)(2+)-catalyzed Belousov-Zhabotinsky (BZ) reaction incorporated into the water nanodroplets of a water-in-oil aerosol OT (AOT) microemulsion. At constant chemical composition, molar ratio and droplet fraction, the transition takes place via a series of stable patterns, including oscillatory Turing patterns (at 35-40 degrees C) and reversed oscillatory Turing patterns (at 50 degrees C). We attribute the pattern transitions to a temperature-induced percolation transition of the BZ-AOT microemulsion, implying a change from isolated water nanodroplets to a system-spanning network of water channels. PMID:19240935

  2. Self-organized pattern formation of an atmospheric-pressure, ac glow discharge with an electrolyte electrode

    International Nuclear Information System (INIS)

    An atmospheric-pressure plasma sustained by an ac power supply was generated using electrolyte solution as one of the electrodes. By altering the power supply, ring-like patterns, double-ring patterns and plasma-spot patterns were observed at the electrolyte–electrode surface. Synchronous current–voltage characteristics and time-resolved images were measured. Important factors for the self-organized patterns, including the electrode gap, power, frequency and electrolyte concentration, were explored. The optical spectrum characteristics of the device were investigated. The pH of the solution after discharge was also explored and the results show that the pH of the solution is evidently reduced after the discharge, implying that acidic components are produced in the solution. This study provides an alternative discharge method for producing patterns on a water surface. (paper)

  3. Laser-induced pattern formation in liquid sulfur. An indication of laser-induced phase transition to ordered polymer

    Science.gov (United States)

    Sakaguchi, Y.; Tamura, K.

    2007-04-01

    Liquid sulfur is a well-known liquid which exhibits a polymerization transition at T_p=159 °C. Recently, it was found from our experiments that such a transition can be induced below Tp through laser illumination and that an iridescent pattern appears under strong illumination with a pulsed laser of more than 60 mJ/cm2 pulse. It is proposed that the visible change in iridescence is due to a macroscopic reconstruction of laser-generated polymers and that a laser-induced phase transition takes place from a freely expanded polymer phase to an ordered polymer phase when increasing the laser illumination. To further examine this possibility, the time variation of the iridescent pattern has been fully investigated using a macro lens, a polarized microscope and an optical microscope. In an analysis of the iridescent pattern, a rapid decrease in the area was observed after an initial slow decrease, suggesting a type of phase transition. Results from the observation of a quenched sulfur sample with a polarized microscope gave evidence that the iridescent region consists of polymers. Through observation of the liquid with a microscope, a striped pattern with micrometer sized spacing was noted in the iridescent pattern. A drastic color change was observed in the pattern from its generation to its disappearance. Sample thickness dependence of the pattern was also observed. These results were well explained by assuming the self-arrangement of laser-generated colloidal polymers.

  4. Multistability, local pattern formation, and global collective firing in a small-world network of non-leaky integrate-and-fire neurons

    CERN Document Server

    Rothkegel, Alexander; 10.1063/1.3087432

    2012-01-01

    We investigate numerically the collective dynamical behavior of pulse-coupled non-leaky integrate-and-fire-neurons that are arranged on a two-dimensional small-world network. To ensure ongoing activity, we impose a probability for spontaneous firing for each neuron. We study network dynamics evolving from different sets of initial conditions in dependence on coupling strength and rewiring probability. Beside a homogeneous equilibrium state for low coupling strength, we observe different local patterns including cyclic waves, spiral waves, and turbulent-like patterns, which -- depending on network parameters -- interfere with the global collective firing of the neurons. We attribute the various network dynamics to distinct regimes in the parameter space. For the same network parameters different network dynamics can be observed depending on the set of initial conditions only. Such a multistable behavior and the interplay between local pattern formation and global collective firing may be attributable to the sp...

  5. Evolution-development congruence in pattern formation dynamics: Bifurcations in gene expression and regulation of networks structures.

    Science.gov (United States)

    Kohsokabe, Takahiro; Kaneko, Kunihiko

    2016-01-01

    Search for possible relationships between phylogeny and ontogeny is important in evolutionary-developmental biology. Here we uncover such relationships by numerical evolution and unveil their origin in terms of dynamical systems theory. By representing developmental dynamics of spatially located cells with gene expression dynamics with cell-to-cell interaction under external morphogen gradient, gene regulation networks are evolved under mutation and selection with the fitness to approach a prescribed spatial pattern of expressed genes. For most numerical evolution experiments, evolution of pattern over generations and development of pattern by an evolved network exhibit remarkable congruence. Both in the evolution and development pattern changes consist of several epochs where stripes are formed in a short time, while for other temporal regimes, pattern hardly changes. In evolution, these quasi-stationary regimes are generations needed to hit relevant mutations, while in development, they are due to some gene expression that varies slowly and controls the pattern change. The morphogenesis is regulated by combinations of feedback or feedforward regulations, where the upstream feedforward network reads the external morphogen gradient, and generates a pattern used as a boundary condition for the later patterns. The ordering from up to downstream is common in evolution and development, while the successive epochal changes in development and evolution are represented as common bifurcations in dynamical-systems theory, which lead to the evolution-development congruence. Mechanism of exceptional violation of the congruence is also unveiled. Our results provide a new look on developmental stages, punctuated equilibrium, developmental bottlenecks, and evolutionary acquisition of novelty in morphogenesis. PMID:26678220

  6. Mechanical Model of Geometric Cell and Topological Algorithm for Cell Dynamics from Single-Cell to Formation of Monolayered Tissues with Pattern

    KAUST Repository

    Kachalo, Sëma

    2015-05-14

    Geometric and mechanical properties of individual cells and interactions among neighboring cells are the basis of formation of tissue patterns. Understanding the complex interplay of cells is essential for gaining insight into embryogenesis, tissue development, and other emerging behavior. Here we describe a cell model and an efficient geometric algorithm for studying the dynamic process of tissue formation in 2D (e.g. epithelial tissues). Our approach improves upon previous methods by incorporating properties of individual cells as well as detailed description of the dynamic growth process, with all topological changes accounted for. Cell size, shape, and division plane orientation are modeled realistically. In addition, cell birth, cell growth, cell shrinkage, cell death, cell division, cell collision, and cell rearrangements are now fully accounted for. Different models of cell-cell interactions, such as lateral inhibition during the process of growth, can be studied in detail. Cellular pattern formation for monolayered tissues from arbitrary initial conditions, including that of a single cell, can also be studied in detail. Computational efficiency is achieved through the employment of a special data structure that ensures access to neighboring cells in constant time, without additional space requirement. We have successfully generated tissues consisting of more than 20,000 cells starting from 2 cells within 1 hour. We show that our model can be used to study embryogenesis, tissue fusion, and cell apoptosis. We give detailed study of the classical developmental process of bristle formation on the epidermis of D. melanogaster and the fundamental problem of homeostatic size control in epithelial tissues. Simulation results reveal significant roles of solubility of secreted factors in both the bristle formation and the homeostatic control of tissue size. Our method can be used to study broad problems in monolayered tissue formation. Our software is publicly

  7. Spatial pattern formation of microbes at the soil microscale affect soil C and N turnover in an individual-based microbial community model

    Science.gov (United States)

    Kaiser, Christina; Evans, Sarah; Dieckmann, Ulf; Widder, Stefanie

    2016-04-01

    At the μm-scale, soil is a highly structured and complex environment, both in physical as well as in biological terms, characterized by non-linear interactions between microbes, substrates and minerals. As known from mathematics and theoretical ecology, spatial structure significantly affects the system's behaviour by enabling synergistic dynamics, facilitating diversity, and leading to emergent phenomena such as self-organisation and self-regulation. Such phenomena, however, are rarely considered when investigating mechanisms of microbial soil organic matter turnover. Soil organic matter is the largest terrestrial reservoir for organic carbon (C) and nitrogen (N) and plays a pivotal role in global biogeochemical cycles. Still, the underlying mechanisms of microbial soil organic matter buildup and turnover remain elusive. We explored mechanisms of microbial soil organic matter turnover using an individual-based, stoichiometrically and spatially explicit computer model, which simulates the microbial de-composer system at the soil microscale (i.e. on a grid of 100 x 100 soil microsites). Soil organic matter dynamics in our model emerge as the result of interactions among individual microbes with certain functional traits (f.e. enzyme production rates, growth rates, cell stoichiometry) at the microscale. By degrading complex substrates, and releasing labile substances microbes in our model continusly shape their environment, which in turn feeds back to spatiotemporal dynamics of the microbial community. In order to test the effect of microbial functional traits and organic matter input rate on soil organic matter turnover and C and N storage, we ran the model into steady state using continuous inputs of fresh organic material. Surprisingly, certain parameter settings that induce resource limitation of microbes lead to regular spatial pattern formation (f.e. moving spiral waves) of microbes and substrate at the μm-scale at steady-state. The occurrence of these

  8. Pattern formation in soft elastic films cast on periodically corrugated surfaces—a linear stability and finite element analysis

    International Nuclear Information System (INIS)

    Length scales of instabilities exhibited by soft, thin elastic films cast on smooth and sharp corrugated surfaces and in adhesive contact with an external contactor are investigated by means of linear stability analysis (LSA) and non-linear finite element analysis. The instability length scales are found to decrease with either an increase in the amplitude β or a decrease in the wavelength λp of the substrate pattern. For same substrate parameters, a step-patterned surface with higher RMS roughness is generally found to engender smaller length scales. The linear stability analysis with sinusoidally patterned substrates shows a reduced scaling of critical wavelength with substrate amplitude: λc = 2.96(1 − β)h, where h is the mean film thickness. The largest substrate amplitudes explored with finite element analysis are limited to β = 0.7, which is found to beget instability length scales of 0.89h, that are much smaller than the 3h length scale that is obtained with flat substrates. This suggests that an increase in substrate roughness via patterning can prove to be an attractive route for the production of miniaturized patterns. (paper)

  9. Pattern Formation and Dynamics in Rayleigh-B\\'{e}nard Convection: Numerical Simulations of Experimentally Realistic Geometries

    OpenAIRE

    Paul, M. R.; Chiam, K.-H.; Cross, M. C.; Fischer, P. F.; Greenside, H. S.

    2002-01-01

    Rayleigh-B\\'{e}nard convection is studied and quantitative comparisons are made, where possible, between theory and experiment by performing numerical simulations of the Boussinesq equations for a variety of experimentally realistic situations. Rectangular and cylindrical geometries of varying aspect ratios for experimental boundary conditions, including fins and spatial ramps in plate separation, are examined with particular attention paid to the role of the mean flow. A small cylindrical co...

  10. Preventing aspartimide formation in Fmoc SPPS of Asp-Gly containing peptides--practical aspects of new trialkylcarbinol based protecting groups.

    Science.gov (United States)

    Behrendt, Raymond; Huber, Simon; White, Peter

    2016-02-01

    In our efforts to develop a universal solution to the problem of aspartimide formation in Fmoc SPPS, we investigated the application of our new β-trialkylmethyl protected aspartic acid building blocks to the synthesis of peptides containing the Asp-Gly motif. The N(α)-Fmoc aspartic acid β-tri-(ethyl/propyl/butyl)methyl esters were used in the synthesis of the classic model peptide scorpion toxin II (VKDGYI), and their effectiveness in minimising aspartimide formation during extended piperidine treatments was evaluated. Furthermore, we compared their efficacy against that of the commonly used approach of adding acids to the Fmoc deprotection solution. Finally, we applied our aspartic acid building blocks to the stepwise Fmoc SPPS of teduglutide, a human GLP-2 analogue, whose synthesis is made challenging by extensive aspartimide formation. In all experiments, our approach led to almost complete reduction of aspartimide formation with accompanied suppression of aspartic acid epimerisation. PMID:26751703

  11. Nano-stenciled RGD-gold patterns that inhibit focal contact maturation induce lamellipodia formation in fibroblasts.

    Science.gov (United States)

    Lutz, Roman; Pataky, Kristopher; Gadhari, Neha; Marelli, Mattia; Brugger, Juergen; Chiquet, Matthias

    2011-01-01

    Cultured fibroblasts adhere to extracellular substrates by means of cell-matrix adhesions that are assembled in a hierarchical way, thereby gaining in protein complexity and size. Here we asked how restricting the size of cell-matrix adhesions affects cell morphology and behavior. Using a nanostencil technique, culture substrates were patterned with gold squares of a width and spacing between 250 nm and 2 µm. The gold was functionalized with RGD peptide as ligand for cellular integrins, and mouse embryo fibroblasts were plated. Limiting the length of cell-matrix adhesions to 500 nm or less disturbed the maturation of vinculin-positive focal complexes into focal contacts and fibrillar adhesions, as indicated by poor recruitment of α5-integrin. We found that on sub-micrometer patterns, fibroblasts spread extensively, but did not polarize. Instead, they formed excessive numbers of lamellipodia and a fine actin meshwork without stress fibers. Moreover, these cells showed aberrant fibronectin fibrillogenesis, and their speed of directed migration was reduced significantly compared to fibroblasts on 2 µm square patterns. Interference with RhoA/ROCK signaling eliminated the pattern-dependent differences in cell morphology. Our results indicate that manipulating the maturation of cell-matrix adhesions by nanopatterned surfaces allows to influence morphology, actin dynamics, migration and ECM assembly of adhering fibroblasts. PMID:21980465

  12. Spatial pattern formation and intraspecific competition of anabasis aphylla l. population in the diluvial fan of junggar basin, nw china

    International Nuclear Information System (INIS)

    Using conventional nearest neighbour analysis and Ripley's L-function, the goal of this study was to analyze spatial patterns of Anabasis aphylla plants in order to investigate underlying competitive processes that shape the population spatial structure from diluvial fan in Junggar Basin, NW China. We found that the spatial patterns of all growth stages were aggregated in the three study plots, and seedling and juvenile plants were more aggregated than expected by chance. Positive associations among growth stages of A. aphylla population were found at a small scale while negative associations of seedling and juvenile relative to adult plants were shown at a larger scale. The processes such as dispersal, seedling establishment, environmental heterogeneity, plant interactions and disturbance may have acted individually or in concert with other processes to produce the aggregated patterns and competitive relationship. Moreover, these findings suggested that the aggregated distribution and the competitive interaction between A. aphylla plants in the diluvial fan reflected not only in mortality, but also in decreased performance (smaller canopy) that was an important characteristic of drought-enduring plant, thus preventing a regular distribution pattern. (author)

  13. A CANDELS-3D-HST synergy: Resolved star formation patterns at 0.7 < z < 1.5

    International Nuclear Information System (INIS)

    We analyze the resolved stellar populations of 473 massive star-forming galaxies at 0.7 < z < 1.5, with multi-wavelength broadband imaging from CANDELS and Hα surface brightness profiles at the same kiloparsec resolution from 3D-HST. Together, this unique data set sheds light on how the assembled stellar mass is distributed within galaxies, and where new stars are being formed. We find the Hα morphologies to resemble more closely those observed in the ACS I band than in the WFC3 H band, especially for the larger systems. We next derive a novel prescription for Hα dust corrections, which accounts for extra extinction toward H II regions. The prescription leads to consistent star formation rate (SFR) estimates and reproduces the observed relation between the Hα/UV luminosity ratio and visual extinction, on both a pixel-by-pixel and a galaxy-integrated level. We find the surface density of star formation to correlate with the surface density of assembled stellar mass for spatially resolved regions within galaxies, akin to the so-called 'main sequence of star formation' established on a galaxy-integrated level. Deviations from this relation toward lower equivalent widths are found in the inner regions of galaxies. Clumps and spiral features, on the other hand, are associated with enhanced Hα equivalent widths, bluer colors, and higher specific SFRs compared to the underlying disk. Their Hα/UV luminosity ratio is lower than that of the underlying disk, suggesting that the ACS clump selection preferentially picks up those regions of elevated star formation activity that are the least obscured by dust. Our analysis emphasizes that monochromatic studies of galaxy structure can be severely limited by mass-to-light ratio variations due to dust and spatially inhomogeneous star formation histories.

  14. Epidemiological aspects of bovine trypanosomosis in an endemic focus of eastern Zambia: The role of trypanosome strain variability in disease pattern

    Directory of Open Access Journals (Sweden)

    Justin Masumu

    2012-06-01

    Full Text Available Bovine trypanosomosis displays various epidemiological aspects in various areas. In some instances the disease has a high prevalence in animals with high impact on production whereas in other cases the disease has a low impact on production despite a high level of infection in animals. In addition epidemiological changes are frequently observed in various areas and are related to many factors including the vectors, the host, the parasites, the environment as well as the livestock management. However the implication of these factors in these changes is not fully elucidated. In eastern Zambia, factors predicting the establishment of severe infection in cattle are all present. However trypanosomosis occurring in cattle in this area has a low impact on livestock production. Several studies on the characterisation of trypanosome strains circulating in domestic and wild animals have been conducted in order to clarify the epidemiology of this disease in this area. These studies aimed at evaluating genetic and biological characteristics of these strains including their virulence profiles, their transmissibility by tsetse flies, their resistance to drugs and interference between different strains. In this review these findings are analysed in order to elucidate the implication of trypanosome strain variability in the distribution and the expression of this disease in the study area. The evolutionary trends of the situation occurring in this study area are also explained. Use of these findings is the context of disease control in the study area is further discussed.

  15. Instability and Pattern Formation in Three-Species Food Chain Model via Holling Type II Functional Response on a Circular Domain

    Science.gov (United States)

    Abid, Walid; Yafia, R.; Aziz Alaoui, M. A.; Bouhafa, H.; Abichou, A.

    2015-06-01

    This paper is devoted to the study of food chain predator-prey model. This model is given by a reaction-diffusion system defined on a circular spatial domain, which includes three-state variables namely, prey and intermediate predator and top predator and incorporates the Holling type II and a modified Leslie-Gower functional response. The aim of this paper is to investigate theoretically and numerically the asymptotic behavior of the interior equilibrium of the model. The local and global stabilities of the positive steady-state solution and the conditions that enable the occurrence of Hopf bifurcation and Turing instability in the circular spatial domain are proved. In the end, we carry out numerical simulations to illustrate how biological processes can affect spatiotemporal pattern formation in a disc spatial domain and different types of spatial patterns with respect to different time steps and diffusion coefficients are obtained.

  16. Formation of dot arrays with a pitch of 20 nm x 20 nm for patterned media using 30 keV EB drawing on thin calixarene resist

    Energy Technology Data Exchange (ETDEWEB)

    Mohamad, Zulfakri bin [Department of Nano-Material System, Graduate School of Engineering, Gunma University, 1-5-1 Tenjin-cho, Kiryu, Gunma 376-8515 (Japan); Shirai, Masumi [Department of Nano-Material System, Graduate School of Engineering, Gunma University, 1-5-1 Tenjin-cho, Kiryu, Gunma 376-8515 (Japan); Sone, Hayato [Department of Production Science and Technology, Graduate School of Engineering, Gunma University, 1-5-1 Tenjin-cho, Kiryu, Gunma 376-8515 (Japan); Hosaka, Sumio [Department of Production Science and Technology, Graduate School of Engineering, Gunma University, 1-5-1 Tenjin-cho, Kiryu, Gunma 376-8515 (Japan); Kodera, Masatoshi [Department of Electronics, Information and Communication Engineering, Osaka Institute of Technology, 5-16-1 Omiya, Asahi-ku, Osaka 535-8585 (Japan)

    2008-01-16

    We studied the possibility of achieving very fine-pitch dot arrays with a pitch of 20 nm x 20 nm using 30 keV electron beam (EB) drawing on negative calixarene resist. In order to form such patterns, we studied the dependence on resist thickness of the dot size and the packing. We propose EB drawing on an extremely thin film for very highly packed dot-array formation. Our experimental results demonstrate the possibility of forming highly packed dot-array patterns with a pitch of 20 nm x 20 nm and a resist thickness of about 13 nm, which corresponds to about 1.6 Tbits in{sup -2}.

  17. The impact of alcohol consumption on patterns of union formation in Russia 1998-2010: an assessment using longitudinal data.

    Science.gov (United States)

    Keenan, Katherine; Kenward, Michael G; Grundy, Emily; Leon, David A

    2014-01-01

    Using data from the Russian Longitudinal Monitoring Survey, 1998-2010, we investigated the extent to which patterns of alcohol consumption in Russia are associated with the subsequent likelihood of entry into cohabitation and marriage. Using discrete-time event history analysis we estimated for 16-50 year olds the extent to which the probabilities of entry into the two types of union were affected by the amount of alcohol drunk and the pattern of drinking, adjusted to allow for social and demographic factors including income, employment, and health. The results show that individuals who did not drink alcohol were less likely to embark on either cohabitation or marriage, that frequent consumption of alcohol was associated with a greater chance of entering unmarried cohabitation than of entering into a marriage, and that heavy drinkers were less likely to convert their relationship from cohabitation to marriage. PMID:25320843

  18. In situ analysis of negative-tone resist pattern formation using organic-solvent-based developer process

    Science.gov (United States)

    Santillan, Julius Joseph; Yamada, Keisaku; Itani, Toshiro

    2014-01-01

    In situ resist “pattern formation” analysis during the development process using high-speed atomic force microscopy has been improved for application not only for conventional aqueous 0.26 N tetramethylammonium hydroxide (aq. TMAH), but also organic solvent n-butyl acetate (nBA) developers. Comparative investigations of resist dissolution in these developers, using the same resist material (hybrid of polyhydroxystyrene and methacrylate), showed a grainlike, uniform dissolution of the “unexposed resist film” in nBA development and uneven dissolution of the “exposed resist film” in aq. TMAH development. These results suggest the importance of dissolution uniformity in further improving the resulting pattern line width roughness.

  19. Pattern formation on polymer resist by solvent-assisted nanoimprinting with PDMS mold as a solvent transport medium

    International Nuclear Information System (INIS)

    Solvent-vapor-assisted imprinting lithography (SVAIL) using a 1 mm thick flexible polydimethylsiloxane (PDMS) membrane mold as a solvent transport medium in a vapor environment is demonstrated. By adjusting the solvent vapor pressure, this transport mechanism provides a sufficient amount of solvent to soften the thin polystyrene resist (<100 nm) and avoids the deformation of imprinted nanopatterns due to excess solvent that is problematic with other methods. The results show that SVAIL has potential for large-area patterning because the molding of the softened polymer can be performed without external loading. Localized molding and conformal contact with a curved surface allow multiple imprinting to be performed to obtain more complex, two-dimensional hierarchical structures using simple stripe-patterned stamps

  20. The Rim101p/PacC Pathway and Alkaline pH Regulate Pattern Formation in Yeast Colonies

    OpenAIRE

    Piccirillo, Sarah; White, Melissa G.; Murphy, Jeffrey C; Law, Douglas J.; Honigberg, Saul M.

    2010-01-01

    Multicellular organisms utilize cell-to-cell signals to build patterns of cell types within embryos, but the ability of fungi to form organized communities has been largely unexplored. Here we report that colonies of the yeast Saccharomyces cerevisiae formed sharply divided layers of sporulating and nonsporulating cells. Sporulation initiated in the colony's interior, and this region expanded upward as the colony matured. Two key activators of sporulation, IME1 and IME2, were initially transc...

  1. Formation of submicron scale periodic ripple pattern on Si surface using medium keV Ar-ion beam

    International Nuclear Information System (INIS)

    This paper deals with the effect of beam scanning on the wavelength of the ripples and present our recent results of Ar+ bombarded Si in the energy range 50-140 keV. Systematic atomic force microscopy (AFM) characterization of the morphology of the ripple pattern in the above studies shows that with beam scanning the ripple wavelength increases with ion energy and decreases with energy for bombardment without ion beam scanning

  2. Discharge competence and pattern formation in peatlands: a meta-ecosystem model of the Everglades ridge-slough landscape.

    Science.gov (United States)

    Heffernan, James B; Watts, Danielle L; Cohen, Matthew J

    2013-01-01

    Regular landscape patterning arises from spatially-dependent feedbacks, and can undergo catastrophic loss in response to changing landscape drivers. The central Everglades (Florida, USA) historically exhibited regular, linear, flow-parallel orientation of high-elevation sawgrass ridges and low-elevation sloughs that has degraded due to hydrologic modification. In this study, we use a meta-ecosystem approach to model a mechanism for the establishment, persistence, and loss of this landscape. The discharge competence (or self-organizing canal) hypothesis assumes non-linear relationships between peat accretion and water depth, and describes flow-dependent feedbacks of microtopography on water depth. Closed-form model solutions demonstrate that 1) this mechanism can produce spontaneous divergence of local elevation; 2) divergent and homogenous states can exhibit global bi-stability; and 3) feedbacks that produce divergence act anisotropically. Thus, discharge competence and non-linear peat accretion dynamics may explain the establishment, persistence, and loss of landscape pattern, even in the absence of other spatial feedbacks. Our model provides specific, testable predictions that may allow discrimination between the self-organizing canal hypotheses and competing explanations. The potential for global bi-stability suggested by our model suggests that hydrologic restoration may not re-initiate spontaneous pattern establishment, particularly where distinct soil elevation modes have been lost. As a result, we recommend that management efforts should prioritize maintenance of historic hydroperiods in areas of conserved pattern over restoration of hydrologic regimes in degraded regions. This study illustrates the value of simple meta-ecosystem models for investigation of spatial processes. PMID:23671708

  3. Discharge Competence and Pattern Formation in Peatlands: A Meta-Ecosystem Model of the Everglades Ridge-Slough Landscape

    OpenAIRE

    Heffernan, James B.; Danielle L Watts; Cohen, Matthew J.

    2013-01-01

    Regular landscape patterning arises from spatially-dependent feedbacks, and can undergo catastrophic loss in response to changing landscape drivers. The central Everglades (Florida, USA) historically exhibited regular, linear, flow-parallel orientation of high-elevation sawgrass ridges and low-elevation sloughs that has degraded due to hydrologic modification. In this study, we use a meta-ecosystem approach to model a mechanism for the establishment, persistence, and loss of this landscape. T...

  4. Discharge competence and pattern formation in peatlands: a meta-ecosystem model of the Everglades ridge-slough landscape.

    Directory of Open Access Journals (Sweden)

    James B Heffernan

    Full Text Available Regular landscape patterning arises from spatially-dependent feedbacks, and can undergo catastrophic loss in response to changing landscape drivers. The central Everglades (Florida, USA historically exhibited regular, linear, flow-parallel orientation of high-elevation sawgrass ridges and low-elevation sloughs that has degraded due to hydrologic modification. In this study, we use a meta-ecosystem approach to model a mechanism for the establishment, persistence, and loss of this landscape. The discharge competence (or self-organizing canal hypothesis assumes non-linear relationships between peat accretion and water depth, and describes flow-dependent feedbacks of microtopography on water depth. Closed-form model solutions demonstrate that 1 this mechanism can produce spontaneous divergence of local elevation; 2 divergent and homogenous states can exhibit global bi-stability; and 3 feedbacks that produce divergence act anisotropically. Thus, discharge competence and non-linear peat accretion dynamics may explain the establishment, persistence, and loss of landscape pattern, even in the absence of other spatial feedbacks. Our model provides specific, testable predictions that may allow discrimination between the self-organizing canal hypotheses and competing explanations. The potential for global bi-stability suggested by our model suggests that hydrologic restoration may not re-initiate spontaneous pattern establishment, particularly where distinct soil elevation modes have been lost. As a result, we recommend that management efforts should prioritize maintenance of historic hydroperiods in areas of conserved pattern over restoration of hydrologic regimes in degraded regions. This study illustrates the value of simple meta-ecosystem models for investigation of spatial processes.

  5. The formation of various multi-soliton patterns and noise-like pulse in a fiber laser passively mode-locked by a topological insulator based saturable absorber

    International Nuclear Information System (INIS)

    We experimentally investigated the formation of various multi-soliton patterns and noise-like (NL) pulses in an erbium-doped fiber laser passively mode-locked by a new type of saturable absorber: topological insulator. With the increase of pump power, various multi-soliton operation states—ordered, chaotic and bunched multiple-soliton—were subsequently obtained. Once the pump power exceeds 401 mW, an NL pulse state emerged, with a maximum 3 dB bandwidth of about 9.3 nm. This systematic study clearly demonstrated that a topological insulator could be an effective saturable absorber for the formation of various soliton operation states in a fiber laser cavity

  6. The formation of various multi-soliton patterns and noise-like pulse in a fiber laser passively mode-locked by a topological insulator based saturable absorber

    Science.gov (United States)

    Chen, Yu; Wu, Man; Tang, Pinghua; Chen, Shuqing; Du, Juan; Jiang, Guobao; Li, Ying; Zhao, Chujun; Zhang, Han; Wen, Shuangchun

    2014-05-01

    We experimentally investigated the formation of various multi-soliton patterns and noise-like (NL) pulses in an erbium-doped fiber laser passively mode-locked by a new type of saturable absorber: topological insulator. With the increase of pump power, various multi-soliton operation states—ordered, chaotic and bunched multiple-soliton—were subsequently obtained. Once the pump power exceeds 401 mW, an NL pulse state emerged, with a maximum 3 dB bandwidth of about 9.3 nm. This systematic study clearly demonstrated that a topological insulator could be an effective saturable absorber for the formation of various soliton operation states in a fiber laser cavity.

  7. The possible role of oxides and/or elements in the transformation of PCDDs in us ball clay exhibiting. The 'Natural Formation' pattern

    Energy Technology Data Exchange (ETDEWEB)

    Gadomski, D.; Irvine, R. [Notre Dame Univ., IN (United States); Tysklind, M.; Andersson, R. [Umeaa Univ. (Sweden)

    2004-09-15

    At Dioxin 2003, we reported the 2,3,7,8-substituted PCDD/F results from the analysis of a ball clay core exhibiting the ''natural formation'' pattern from Kentucky, USA. In general, all 8 samples contained elevated levels of 2,3,7,8-PCDDs, with increasing PCDD concentrations with increasing chlorine substitution. Moreover, furans were only detected in two of the samples at extremely low concentrations. WHO-TEQs ranged from 180 to 2,500 pg WHO-TEQ/g dm, with 1,2,3,7,8- PeCDD and 1,2,3,7,8,9-HxCDD contributing most to the TEQ. The results from that study were the first to provide information on the vertical changes in both PCDD congener profile and concentrations within a clay core exhibiting this unique ''natural formation'' pattern. In addition, it confirmed the pattern found by others in ball clay and kaolin samples from different regions of the United States, Germany, and Spain. Although all samples from that study exhibit the ''natural formation'' pattern, one noticeable difference was the heptaCDD ratio. 1,2,3,4,6,7,8-HpCDD was on average 2.1 times greater than 1,2,3,4,6,7,9-HpCDD. This is in direct contrast to what others have reported for ball clay, kaolin, and even sediment samples displaying this unique PCDD/F congener profile. Ferrario et al., reported a mean 1,2,3,4,6,7,8-HpCDD/1,2,3,4,6,7,9-HpCDD ratio of 0.67.2 Prange et al., found that this ratio ranged from 0.36 to 0.83 in kaolin samples from Queensland, Australia. In this study, we report isomer specific PCDD results from the analysis of the ball clay core samples from Kentucky to determine if the dechlorination pattern observed is similar to what Gaus et al. found. Also, Principal Component Analysis (PCA) was used to evaluate the isomer specific data along with the bulk mineralogical, elemental and oxide analyses. The possible role of oxides and/or elements aiding in the dechlorination is discussed.

  8. In-situ observation of pattern formation during the catalytic CO-oxidation on Pt{110} using Low Energy Electron Microscopy

    International Nuclear Information System (INIS)

    This study describes the spatio-temporal pattern formation in the catalytic oxidation of carbon monoxide on Pt(110) observed by Low Energy Electron Microscopy (LEEM) and Mirror Electron Microscopy (MEM). Compared to Photo Emission Electron Microscopy (PEEM), LEEM has a superior resolution and a contrast mechanism based on diffraction. This enables us to observe the properties and dynamics of the substrate like reconstruction, steps and roughening of the surface. The experimental setup has been enhanced by mounting a new electron gun, a feedback controlled gas inlet and a current controlled radiative heating device. This improved considerably the operability, the resolution, the electron intensity and the precision of the parameter settings (p(CO), p(O2), T). Thus it was possible to study the dynamic processes on the surface with a lateral resolution of 50um and a time resolution of 1/25s having a pressure of 10-5mbar. As a result of strong CO-gasphase coupling in the CO+O2/Pt{110} system the surface can undergo spatially uniform oscillations. Changes in the surface reflectivity for low energy electrons have been observed at numerous incident electron energies. These measurements have been interpreted in terms of adsorbate coverage and the degree of 1x2 reconstruction. It is then possible to arrive at a complete description of such an oscillatory cycle. Due to the mass balance in the reactor the ratio of the partialpressures p(O2) and p(CO) is changed differently in the high rate and low rate branch. Therfore gas phase coupling has a strong influence on the pattern formation, and oscillations in the CO2-rate change the pattern formation oscillatory. Taking advantage of the diffraction contrast mechanism and the superior resolution of the LEEM it is possible to investigate the fine structure of reaction diffusion fronts during propagation. The dynamics of changes in the adsorbate coverage (CO und O2) is significantly faster than that of the changes in substrate

  9. WBC27, an Adenosine Tri-phosphate-binding Cassette Protein, Controls Pollen Wall Formation and Patterning in Arabidopsis

    Institute of Scientific and Technical Information of China (English)

    Xiao-Ying Dou; Ke-Zhen Yang; Yi Zhang; Wei Wang; Xiao-Lei Liu; Li-Qun Chen; Xue-Qin Zhang; De Ye

    2011-01-01

    In flowering plants, the exine components are derived from tapetum. Despite its importance to sexual plant reproduction, little is known about the translocation of exine materials from tapetum to developing microspores. Here we report functional characterization of the arabidopsis WBC27 gene. WBC27 encodes an adenosine tri-phosphate binding cassette (ABC) transporter and is expressed preferentially in tapetum. Mutation of WBC27 disrupted the exine formation. The wbc27 mutant microspores began to degenerate once released from tetrads and most of the microspores collapsed at the uninucleate stage. Only a small number of wbc27-1 microspores could develop into tricellular pollen grains. These survival pollen grains lacked exine and germinated in the anther before anthesis. All of these results suggest that the ABC transporter, WBC27 plays important roles in the formation of arabidopsis exine, possibly by translocation of lipidic precursors of sporopollenin from tapetum to developing microspores.

  10. SEDIMENTARY PATTERN OF PROTOTYPE BASIN IN THE DEPOSITION PERIOD OF LAIYANG FORMATION AND THE ADVANTAGEOUS AREAS FOR OIL AND GAS EXPLORATION OF JIAOLAI BASIN

    Institute of Scientific and Technical Information of China (English)

    WU Zhiping; LI Ling; LI Wei; ZHOU Yaoqi

    2004-01-01

    Laiyang formation of Jiaolai Basin is the target stratum for oil and gas exploration. By measuring several field sections, the authors find that Laiyang formation reveals the whole processes from development to death of the lake basin and its sedimentary facies differ in different structural locations.Analyses about sedimentary facies and paleocurrent orientations in association with researches about the positive tectonic units such as Dayetou horseback and Chaigou horst indicate that Laiyang sag is a relatively independent sedimentary unit that shows great water depth typical of deep lake or semideep lake and was controlled by Wulongcun fault during the deposition period of Laiyang formation. Its sediments mainly originated from Jiaobei uplift area and Dayetou horseback. Gaomi-Zhucheng sag was a fast-filled basin controlled by Wurong fault and Yishu fault zone, being high in the northeast and low in the northwest and characterized by the development of pluvial facies and fluvial facies in most areas, and with the development of lake facies being limited to local low-lying regions. Selection of advantageous hydrocarbon reservoir areas for exploration purpose mainly relies on the sedimentation pattern of prototype basin and conservation conditions. The central-west area of Laiyang sag covered by overlying Laiyang formation is the most advantageous exploration area.

  11. In vitro megakaryocyte differentiation and proplatelet formation in Ph-negative classical myeloproliferative neoplasms: distinct patterns in the different clinical phenotypes.

    Directory of Open Access Journals (Sweden)

    Alessandra Balduini

    Full Text Available BACKGROUND: Ph-negative myeloproliferative neoplasms (MPNs are clonal disorders that include primary myelofibrosis (PMF, polycythemia vera (PV and essential thrombocythemia (ET. Although the pathogenesis of MPNs is still incompletely understood, an involvement of the megakaryocyte lineage is a distinctive feature. METHODOLOGY/PRINCIPAL FINDINGS: We analyzed the in vitro megakaryocyte differentiation and proplatelet formation in 30 PMF, 8 ET, 8 PV patients, and 17 healthy controls (CTRL. Megakaryocytes were differentiated from peripheral blood CD34(+ or CD45(+ cells in the presence of thrombopoietin. Megakaryocyte output was higher in MPN patients than in CTRL with no correlation with the JAK2 V617F mutation. PMF-derived megakaryocytes displayed nuclei with a bulbous appearance, were smaller than ET- or PV-derived megakaryocytes and formed proplatelets that presented several structural alterations. In contrast, ET- and PV-derived megakaryocytes produced more proplatelets with a striking increase in bifurcations and tips compared to both control and PMF. Proplatelets formation was correlated with platelet counts in patient peripheral blood. Patients with pre-fibrotic PMF had a pattern of megakaryocyte proliferation and proplatelet formation that was similar to that of fibrotic PMF and different from that of ET. CONCLUSIONS/SIGNIFICANCE: In conclusion, MPNs are associated with high megakaryocyte proliferative potential. Profound differences in megakaryocyte morphology and proplatelet formation distinguish PMF, both fibrotic and prefibrotic, from ET and PV.

  12. Distinct patterns of notochord mineralization in zebrafish coincide with the localization of Osteocalcin isoform 1 during early vertebral centra formation

    OpenAIRE

    Bensimon-Brito Anabela; Cardeira João; Cancela Maria; Huysseune Ann; Witten Paul

    2012-01-01

    Abstract Background In chondrichthyans, basal osteichthyans and tetrapods, vertebral bodies have cartilaginous anlagen that subsequently mineralize (chondrichthyans) or ossify (osteichthyans). Chondrocytes that form the vertebral centra derive from somites. In teleost fish, vertebral centrum formation starts in the absence of cartilage, through direct mineralization of the notochord sheath. In a second step, the notochord is surrounded by somite-derived intramembranous bone. In several small ...

  13. Disentangling endogenous versus exogenous pattern formation in spatial ecology: a case study of the ant Azteca sericeasur in southern Mexico

    Science.gov (United States)

    Li, Kevin; Vandermeer, John H.; Perfecto, Ivette

    2016-01-01

    Spatial patterns in ecology can be described as reflective of environmental heterogeneity (exogenous), or emergent from dynamic relationships between interacting species (endogenous), but few empirical studies focus on the combination. The spatial distribution of the nests of Azteca sericeasur, a keystone tropical arboreal ant, is thought to form endogenous spatial patterns among the shade trees of a coffee plantation through self-regulating interactions with controlling agents (i.e. natural enemies). Using inhomogeneous point process models, we found evidence for both types of processes in the spatial distribution of A. sericeasur. Each year's nest distribution was determined mainly by a density-dependent relationship with the previous year's lagged nest density; but using a novel application of a Thomas cluster process to account for the effects of nest clustering, we found that nest distribution also correlated significantly with tree density in the later years of the study. This coincided with the initiation of agricultural intensification and tree felling on the coffee farm. The emergence of this significant exogenous effect, along with the changing character of the density-dependent effect of lagged nest density, provides clues to the mechanism behind a unique phenomenon observed in the plot, that of an increase in nest population despite resource limitation in nest sites. Our results have implications in coffee agroecological management, as this system provides important biocontrol ecosystem services. Further research is needed, however, to understand the effective scales at which these relationships occur. PMID:27293786

  14. Spine formation pattern of adult-born neurons is differentially modulated by the induction timing and location of hippocampal plasticity.

    Directory of Open Access Journals (Sweden)

    Noriaki Ohkawa

    Full Text Available In the adult hippocampus dentate gyrus (DG, newly born neurons are functionally integrated into existing circuits and play important roles in hippocampus-dependent memory. However, it remains unclear how neural plasticity regulates the integration pattern of new neurons into preexisting circuits. Because dendritic spines are major postsynaptic sites for excitatory inputs, spines of new neurons were visualized by retrovirus-mediated labeling to evaluate integration. Long-term potentiation (LTP was induced at 12, 16, or 21 days postinfection (dpi, at which time new neurons have no, few, or many spines, respectively. The spine expression patterns were investigated at one or two weeks after LTP induction. Induction at 12 dpi increased later spinogenesis, although the new neurons at 12 dpi didn't respond to the stimulus for LTP induction. Induction at 21 dpi transiently mediated spine enlargement. Surprisingly, LTP induction at 16 dpi reduced the spine density of new neurons. All LTP-mediated changes specifically appeared within the LTP-induced layer. Therefore, neural plasticity differentially regulates the integration of new neurons into the activated circuit, dependent on their developmental stage. Consequently, new neurons at different developmental stages may play distinct roles in processing the acquired information by modulating the connectivity of activated circuits via their integration.

  15. Disentangling endogenous versus exogenous pattern formation in spatial ecology: a case study of the ant Azteca sericeasur in southern Mexico.

    Science.gov (United States)

    Li, Kevin; Vandermeer, John H; Perfecto, Ivette

    2016-05-01

    Spatial patterns in ecology can be described as reflective of environmental heterogeneity (exogenous), or emergent from dynamic relationships between interacting species (endogenous), but few empirical studies focus on the combination. The spatial distribution of the nests of Azteca sericeasur, a keystone tropical arboreal ant, is thought to form endogenous spatial patterns among the shade trees of a coffee plantation through self-regulating interactions with controlling agents (i.e. natural enemies). Using inhomogeneous point process models, we found evidence for both types of processes in the spatial distribution of A. sericeasur. Each year's nest distribution was determined mainly by a density-dependent relationship with the previous year's lagged nest density; but using a novel application of a Thomas cluster process to account for the effects of nest clustering, we found that nest distribution also correlated significantly with tree density in the later years of the study. This coincided with the initiation of agricultural intensification and tree felling on the coffee farm. The emergence of this significant exogenous effect, along with the changing character of the density-dependent effect of lagged nest density, provides clues to the mechanism behind a unique phenomenon observed in the plot, that of an increase in nest population despite resource limitation in nest sites. Our results have implications in coffee agroecological management, as this system provides important biocontrol ecosystem services. Further research is needed, however, to understand the effective scales at which these relationships occur. PMID:27293786

  16. Patterns of superficial fibre formation in the European pearlfish (Rutilus frisii meidingeri) provide a general template for slow muscle development in teleost fish.

    Science.gov (United States)

    Stoiber, W; Haslett, J R; Goldschmid, A; Sänger, A M

    1998-06-01

    The debate about the pattern of muscle formation in teleost fish has recently been heightened in the literature. Here we examine superficial muscle development in the pearlfish, a cyprinid endemic to a small area of Central Europe, and uninfluenced by economic interest and breeding. Using light and electron microscopy, histochemistry and immunohistochemistry techniques, we report that: (1) Superficial fibre precursors originate close to the notochord, are part of the same cell population as the so-called muscle pioneer cells, and are transferred laterally to end up at the surface of the myotome. (2) Superficial fibre maturation is exceptionally rapid. Structural and enzymatic functionality is attained at a time when prospective deep fibres have not passed beyond the early myotube state. This strong contrast weakens as the embryo develops. (3) Apart from the muscle pioneers, the superficial fibres appear to be capable of functioning before they receive any direct innervation, implying that signals are transferred to these fibres via cell-to-cell junctions. We suggest that the capability of rapid superficial fibre maturation is a rather general feature among teleosts and may aid pre-hatch survival under a variable environment. Our results indicate that muscle formation in teleost fish may follow a common basic pattern that is open to considerable ontogenetic and phylogenetic modification in response to habitat conditions. PMID:9682979

  17. Excitation and Adaptation in Bacteria–a Model Signal Transduction System that Controls Taxis and Spatial Pattern Formation

    Directory of Open Access Journals (Sweden)

    Chuan Xue

    2013-04-01

    Full Text Available The machinery for transduction of chemotactic stimuli in the bacterium E. coli is one of the most completely characterized signal transduction systems, and because of its relative simplicity, quantitative analysis of this system is possible. Here we discuss models which reproduce many of the important behaviors of the system. The important characteristics of the signal transduction system are excitation and adaptation, and the latter implies that the transduction system can function as a “derivative sensor” with respect to the ligand concentration in that the DC component of a signal is ultimately ignored if it is not too large. This temporal sensing mechanism provides the bacterium with a memory of its passage through spatially- or temporally-varying signal fields, and adaptation is essential for successful chemotaxis. We also discuss some of the spatial patterns observed in populations and indicate how cell-level behavior can be embedded in population-level descriptions.

  18. Patterns beyond Faraday waves: observation of parametric crossover from Faraday instabilities to the formation of vortex lattices in open dual fluid strata

    Science.gov (United States)

    Ohlin, Kjell; Berggren, Karl Fredrik

    2016-07-01

    Faraday first characterised the behaviour of a fluid in a container subjected to vertical periodic oscillations. His study pertaining to hydrodynamic instability, the ‘Faraday instability’, has catalysed a myriad of experimental, theoretical, and numerical studies shedding light on the mechanisms responsible for the transition of a system at rest to a new state of well-ordered vibrational patterns at fixed frequencies. Here we study dual strata in a shallow vessel containing distilled water and high-viscosity lubrication oil on top of it. At elevated driving power, beyond the Faraday instability, the top stratum is found to ‘freeze’ into a rigid pattern with maxima and minima. At the same time there is a dynamic crossover into a new state in the form of a lattice of recirculating vortices in the lower layer containing the water. Instrumentation and the physics behind are analysed in a phenomenological way together with a basic heuristic modelling of the wave field. The study, which is based on relatively low-budget equipment, stems from related art projects that have evolved over the years. The study is of value within basic research as well as in education, especially as more advanced collective project work in e.g. engineering physics, where it invites further studies of pattern formation, the emergence of vortex lattices and complexity.

  19. Structural Evolution During Formation and Filling of Self-patterned Nanoholes on GaAs (100 Surfaces

    Directory of Open Access Journals (Sweden)

    Zhou Lin

    2008-01-01

    Full Text Available Abstract Nanohole formation on an AlAs/GaAs superlattice gives insight to both the “drilling” effect of Ga droplets on AlAs as compared to GaAs and the hole-filling process. The shape and depth of the nanoholes formed on GaAs (100 substrates has been studied by the cross-section transmission electron microscopy. The Ga droplets “drill” through the AlAs layer at a much slower rate than through GaAs due to differences in activation energy. Refill of the nanohole results in elongated GaAs mounds along the [01−1] direction. As a result of capillarity-induced diffusion, GaAs favors growth inside the nanoholes, which provides the possibility to fabricate GaAs and AlAs nanostructures.

  20. The distribution pattern of trace elements in Pedra do Fogo formation, permian of Maranhao Basin and it application as an environment indicator of sedimentation

    International Nuclear Information System (INIS)

    The present investigation consisted of a geochemical study of the medium and upper layers of the Pedra do Fogo Formation aiming at correlating its elemental distribution pattern with the sedimentary environment where that formation was deposited. Pelitic material with carbonate content below 30% was sampled in the three different outcrops of the Pedra do Fogo Formation for mineralogical and chemical analyses. Illite and dolomite, with subordinate amounts of smectite, calcite, quartz and K-feldspar were determined by X-ray diffraction techniques as the constituents of the mineral assemblages. Trace element (B, Ba, Co, Cr, Cu, Ga, Li, Mn, Ni, P, V, Pb, Sr, Rb and Zn), CO sub(2) and K concentrations were determined by emission spectrography, atomic absorption spectrometry and colorimetry. The interpretation of the chemical data based on B-V, Ga-B, B-K sub(2) O and B-Ga-Rb diagrams and on B content indicates a wite range of variation for the medium salinity during the deposition of the Pedra do Fogo rocks. Accordingly, the observed sequence is composed of intercalations of marine and fresh water sediments, the latter being dominant. The marine intercalations are more frequent in the bottom of the sampled stratigraphic section and become progressively rarer towards the top layers which were deposited in a typically fresh water environment. (author)