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Sample records for aspect pattern formation

  1. Mathematical aspects of pattern formation in biological systems

    CERN Document Server

    Wei, Juncheng

    2013-01-01

    This monograph is concerned with the mathematical analysis of patterns which are encountered in biological systems. It summarises, expands and relates results obtained in the field during the last fifteen years. It also links the results to biological applications and highlights their relevance to phenomena in nature. Of particular concern are large-amplitude patterns far from equilibrium in biologically relevant models.The approach adopted in the monograph is based on the following paradigms:• Examine the existence of spiky steady states in reaction-diffusion systems and select as observabl

  2. Pattern Formation in Materials

    Science.gov (United States)

    Karma, Alain

    2011-04-01

    Pattern formation is ubiquitous in nature, from sand ripples formed by wind to the development of a complex biological organism with different organs and a central nervous system. In the realm of materials, patterns are formed invariably when matter is transformed between different solid, liquid or gaseous states far from thermodynamic equilibrium. Material failure is itself mediated by the propagation of cracks that form intricate patterns. Understanding how patterns form and evolve is key to design materials with desired properties and to optimize their performance and safety. This talk will discuss recent progress made to understand three distinct class of patterns including the highly branched snow-flake-like dendritic patterns formed during the solidification process, polycrystalline patterns shaped by grain boundaries, and crack patterns.

  3. Pattern formation today.

    Science.gov (United States)

    Chuong, Cheng-Ming; Richardson, Michael K

    2009-01-01

    Patterns are orders embedded in randomness. They may appear as spatial arrangements or temporal series, and the elements may appear identical or with variations. Patterns exist in the physical world as well as in living systems. In the biological world, patterns can range from simple to complex, forming the basic building blocks of life. The process which generates this ordering in the biological world was termed pattern formation. Since Wolpert promoted this concept four decades ago, scientists from molecular biology, developmental biology, stem cell biology, tissue engineering, theoretical modeling and other disciplines have made remarkable progress towards understanding its mechanisms. It is time to review and re-integrate our understanding. Here, we explore the origin of pattern formation, how the genetic code is translated into biological form, and how complex phenotypes are selected over evolutionary time. We present four topics: Principles, Evolution, Development, and Stem Cells and Regeneration. We have interviewed several leaders in the field to gain insight into how their research and the field of pattern formation have shaped each other. We have learned that both molecular process and physico-chemical principles are important for biological pattern formation. New understanding will emerge through integration of the analytical approach of molecular-genetic manipulation and the systemic approach of model simulation. We regret that we could not include every major investigator in the field, but hope that this Special Issue of the Int. J. Dev. Biol. represents a sample of our knowledge of pattern formation today, which will help to stimulate more research on this fundamental process.

  4. Theoretical Aspects of Enterprise Business Strategy Formation

    OpenAIRE

    Valentinavičius, Stasys

    2009-01-01

    The paper presents interpretations of business strategy concept and analyses strategy planning and formation, models. The concept of business strategy is revised and formulated considering various authors approaches. Analysis of business strategy formation process – steps of development and management, selection of strategy type – is based on presented strategy planning models. The aspects of enterprise business and investment strategy formation, coordination and valuation are analysed. The s...

  5. Pattern formations and oscillatory phenomena

    CERN Document Server

    Kinoshita, Shuichi

    2013-01-01

    Patterns and their formations appear throughout nature, and are studied to analyze different problems in science and make predictions across a wide range of disciplines including biology, physics, mathematics, chemistry, material science, and nanoscience. With the emergence of nanoscience and the ability for researchers and scientists to study living systems at the biological level, pattern formation research has become even more essential. This book is an accessible first of its kind guide for scientists, researchers, engineers, and students who require a general introduction to thi

  6. Pattern formation in the geosciences.

    Science.gov (United States)

    Goehring, Lucas

    2013-01-01

    Pattern formation is a natural property of nonlinear and non-equilibrium dynamical systems. Geophysical examples of such systems span practically all observable length scales, from rhythmic banding of chemical species within a single mineral crystal, to the morphology of cusps and spits along hundreds of kilometres of coastlines. This article briefly introduces the general principles of pattern formation and argues how they can be applied to open problems in the Earth sciences. Particular examples are then discussed, which summarize the contents of the rest of this Theme Issue.

  7. Pattern Formation and Infinite Sets

    Science.gov (United States)

    Berezin, Alexander A.

    2002-03-01

    In polynomial simulations of pattern formation and self-organization (e.g., bifurcational cascades, fractal structures of Julia sets, cosmogenesis, bioevolution), starting from rational points and coefficients leaves all subsequent iterations rational. While rational points have zero Lebesgue measure, they are dense everywhere in any N-dimensional space and hence any iteration trail or fractal structure at any level of resolution can be constructed with arbitrary precision using subset of only rational points. Any geometrical object or pattern can be spanned over rational points (pixels) with arbitrary precision. Since all rationals can be one-to-one counted by set of all integers, or any infinite subset of them (e.g., by primes), any pattern spanned over rationals can be translated into pattern spanned over, say, only (counting) primes. Since counting rationals by any set of integers always forms jumpwise mapping (nonmonotonic bijectivity), resulting translation of connected pattern (say, 3D Euclidean, or 4D Einsteinian) appears chaotic, but can always be finitely descrambled (Arnold's Cat analogy). Simplest model when all rational points on x-axis are Cantor-counted by set of all primes results in infinitude of never-repeating primes on any arbitrary small epsilon-interval (fractal hologram with infinite depth). This potential "Platonic Library written in primes" provides infinite "reference" resource for pattern formation dynamics.

  8. Stability on Adaptive NN Formation Control with Variant Formation Patterns and Interaction Topologies

    Directory of Open Access Journals (Sweden)

    Xin Chen

    2008-03-01

    Full Text Available The formation task achieved by multiple robots is a tough issue in practice, because of the limitations of the sensing abilities and communicating functions among them. This paper investigates the decentralized formation control in case of parameter uncertainties, bounded disturbances, and variant interactions among robots. To design decentralized controller, a formation description is firstly proposed, which consists of two aspects in terms of formation pattern and interaction topology. Then the formation control using adaptive neural network (ANN is proposed based on the relative error derived from formation description. From the analysis on stability of the formation control under invariant/variant formation pattern and interaction topology, it is concluded that if formation pattern is of class Ck, k ≥1, and interaction graph is connected and changed with finite times, the convergence of the formation control is guaranteed, so that robots must form the formation described by the formation pattern.

  9. Magnetic Assisted Colloidal Pattern Formation

    Science.gov (United States)

    Yang, Ye

    Pattern formation is a mysterious phenomenon occurring at all scales in nature. The beauty of the resulting structures and myriad of resulting properties occurring in naturally forming patterns have attracted great interest from scientists and engineers. One of the most convenient experimental models for studying pattern formation are colloidal particle suspensions, which can be used both to explore condensed matter phenomena and as a powerful fabrication technique for forming advanced materials. In my thesis, I have focused on the study of colloidal patterns, which can be conveniently tracked in an optical microscope yet can also be thermally equilibrated on experimentally relevant time scales, allowing for ground states and transitions between them to be studied with optical tracking algorithms. In particular, I have focused on systems that spontaneously organize due to particle-surface and particle-particle interactions, paying close attention to systems that can be dynamically adjusted with an externally applied magnetic or acoustic field. In the early stages of my doctoral studies, I developed a magnetic field manipulation technique to quantify the adhesion force between particles and surfaces. This manipulation technique is based on the magnetic dipolar interactions between colloidal particles and their "image dipoles" that appear within planar substrate. Since the particles interact with their own images, this system enables massively parallel surface force measurements (>100 measurements) in a single experiment, and allows statistical properties of particle-surface adhesion energies to be extracted as a function of loading rate. With this approach, I was able to probe sub-picoNewton surface interactions between colloidal particles and several substrates at the lowest force loading rates ever achieved. In the later stages of my doctoral studies, I focused on studying patterns formed from particle-particle interaction, which serve as an experimental model of

  10. Thermodynamic Aspects of Tropical Cyclone Formation

    Science.gov (United States)

    Wang, Z.

    2012-12-01

    The thermodynamic aspects of tropical cyclone (TC) formation near the center of the wave pouch, a region of approximately closed Lagrangian circulation within the wave critical layer, are examined through diagnoses of a high-resolution numerical simulation and dropsonde data from a recent field campaign. It is found that the meso-β area near the pouch center is characterized by high saturation fraction, small difference in equivalent potential temperature (θe) between the surface and the middle troposphere, and a short incubation time scale. Updrafts tend to be more vigorous in this region, presumably due to reduced dry air entrainment, while downdrafts are not suppressed. The thermodynamic conditions near the pouch center are thus critically important for TC formation. The balanced responses to convective and stratiform heating at the pre-genesis stage are examined using the Sawyer-Eliassen equation. Deep convection is concentrated near the pouch center. The strong radial and vertical gradients of latent heat release effectively force the transverse circulation and spin up a surface proto-vortex near the pouch center. Stratiform heating induces modest mid-level inflow and very weak low-level outflow, which contributes to the mid-level spin-up without substantially spinning down the low-level circulation. The analysis of dropsonde data shows that the mid-level θe increases significantly near the pouch center one to two days prior to genesis but changes little away from the pouch center. This may indicate convective organization and the impending TC genesis. It also suggests that the critical information of TC genesis near the pouch center may be masked out if a spatial average is taken over the pouch scale. Time-radius plots of (a) saturation fraction (SF; units: %), (b) θe difference between 950 mb and 700 mb (950 mb "minus" 700 hPa; units: K), and (c) χm in the numerical model simulation of Felix.

  11. Separation vortices and pattern formation

    DEFF Research Database (Denmark)

    Andersen, Anders Peter; Bohr, Tomas; Schnipper, Teis

    2010-01-01

    -time evolution of the sand ripple pattern, which has the surprising features that it breaks the local sand conservation and has long-range interaction, features that can be underpinned by experiments. Very similar vortex dynamics takes place around oscillating structures such as wings and fins. Here, we present...

  12. Pattern Formation in Vertebrate Limbs

    Science.gov (United States)

    1995-05-08

    embryological systems was sporadic. A resurgence of interest occurred in the 1960 ’ s. It was at this time that Wolpert presented his concept of positional...as are changes in receptors on the plasma membrane (Hood, Huang, & Dreyer, 1977) . 11 DEVELOPMENT AND PATTERNS IN THE EMBRYONIC CHICKEN LIMB The...Development i. Stages 1 to 6 The period of gestation for the chicken is 20 to 21 days and is divided into a series of stages identified by

  13. Pattern Formation in Active Nematics

    Science.gov (United States)

    Mishra, Prashant

    This thesis presents analytical and numerical studies of the nonequilibrium dynamics of active nematic liquid crystals. Active nematics are a new class of liquid crystals consisting of elongated rod-like units that convert energy into motion and spontaneously organize in large-scale structures with orientational order and self-sustained flows. Examples include suspensions of cytoskeletal filaments and associated motor proteins, monolayers of epithelial cells plated on a substrate, and bacteria swimming in a nematic liquid crystal. In these systems activity drives the continuous generation and annihilation of topological defects and streaming flows, resulting in spatio-temporal chaotic dynamics akin to fluid turbulence, but that occurs in a regime of flow of vanishing Reynolds number, where inertia is negligible. Quantifying the origin of this nonequilibrium dynamics has implications for understanding phenomena ranging from bacterial swarming to cytoplasmic flows in living cells. After a brief review (Chapter 2) of the properties of equilibrium or passive nematic liquid crystals, in Chapter 3 we discuss how the hydrodynamic equations of nematic liquid crystals can be modified to account for the effect of activity. We then use these equations of active nemato-hydrodynamics to characterize analytically the nonequilibrium steady states of the system and their stability. We supplement the analytical work with numerical solution of the full nonlinear equations for the active suspension and construct a phase diagram that identifies the various emergent patterns as a function of activity and nematic stiffness. In Chapter 4 we compare results obtained with two distinct hydrodynamic models that have been employed in previous studies. In both models we find that the chaotic spatio-temporal dynamics in the regime of fully developed active turbulence is controlled by a single active scale determined by the balance of active and elastic stresses. This work provides a unified

  14. Blood drop patterns: Formation and applications.

    Science.gov (United States)

    Chen, Ruoyang; Zhang, Liyuan; Zang, Duyang; Shen, Wei

    2016-05-01

    The drying of a drop of blood or plasma on a solid substrate leads to the formation of interesting and complex patterns. Inter- and intra-cellular and macromolecular interactions in the drying plasma or blood drop are responsible for the final morphologies of the dried patterns. Changes in these cellular and macromolecular components in blood caused by diseases have been suspected to cause changes in the dried drop patterns of plasma and whole blood, which could be used as simple diagnostic tools to identify the health of humans and livestock. However, complex physicochemical driving forces involved in the pattern formation are not fully understood. This review focuses on the scientific development in microscopic observations and pattern interpretation of dried plasma and whole blood samples, as well as the diagnostic applications of pattern analysis. Dried drop patterns of plasma consist of intricate visible cracks in the outer region and fine structures in the central region, which are mainly influenced by the presence and concentration of inorganic salts and proteins during drying. The shrinkage of macromolecular gel and its adhesion to the substrate surface have been thought to be responsible for the formation of the cracks. Dried drop patterns of whole blood have three characteristic zones; their formation as functions of drying time has been reported in the literature. Some research works have applied engineering treatment to the evaporation process of whole blood samples. The sensitivities of the resultant patterns to the relative humidity of the environment, the wettability of the substrates, and the size of the drop have been reported. These research works shed light on the mechanisms of spreading, evaporation, gelation, and crack formation of the blood drops on solid substrates, as well as on the potential applications of dried drop patterns of plasma and whole blood in diagnosis. Crown Copyright © 2016. Published by Elsevier B.V. All rights reserved.

  15. METHODOLOGICAL ASPECTS OF THE INTERNAL CONTROL SYSTEM FORMATION

    Directory of Open Access Journals (Sweden)

    Larisa I. Egorova

    2014-01-01

    Full Text Available The methodological aspects of the internal control system formation are stated in the article. The great attention is focused on the problems of financial statements misrepresentation. The basic principles and structure of the internal control system are discussed in this article.

  16. Pattern Formation in a Bacterial Colony Model

    Directory of Open Access Journals (Sweden)

    Xinze Lian

    2014-01-01

    Full Text Available We investigate the spatiotemporal dynamics of a bacterial colony model. Based on the stability analysis, we derive the conditions for Hopf and Turing bifurcations. Furthermore, we present novel numerical evidence of time evolution of patterns controlled by parameters in the model and find that the model dynamics exhibit a diffusion controlled formation growth to spots, holes and stripes pattern replication, which show that the bacterial colony model is useful in revealing the spatial predation dynamics in the real world.

  17. Evolution of Web Applications with Aspect-Oriented Design Patterns

    DEFF Research Database (Denmark)

    2007-01-01

    It is more convenient to talk about changes in a domainspecific way than to formulate them at the programming construct level or-even worse-purely lexical level. Using aspect-oriented programming, changes can be modularized and made reapplicable. In this paper, selected change types in web...... applications are analyzed. They are expressed in terms of general change types which, in turn, are implemented using aspect-oriented programming. Some of general change types match aspect-oriented design patterns or their combinations....

  18. Lysozyme pattern formation in evaporating droplets

    Science.gov (United States)

    Gorr, Heather Meloy

    Liquid droplets containing suspended particles deposited on a solid, flat surface generally form ring-like structures due to the redistribution of solute during evaporation (the "coffee ring effect"). The forms of the deposited patterns depend on complex interactions between solute(s), solvent, and substrate in a rapidly changing, far from equilibrium system. Solute self-organization during evaporation of colloidal sessile droplets has attracted the attention of researchers over the past few decades due to a variety of technological applications. Recently, pattern formation during evaporation of various biofluids has been studied due to potential applications in medical screening and diagnosis. Due to the complexity of 'real' biological fluids and other multicomponent systems, a comprehensive understanding of pattern formation during droplet evaporation of these fluids is lacking. In this PhD dissertation, the morphology of the patterns remaining after evaporation of droplets of a simplified model biological fluid (aqueous lysozyme solutions + NaCl) are examined by atomic force microscopy (AFM) and optical microscopy. Lysozyme is a globular protein found in high concentration, for example, in human tears and saliva. The drop diameters, D, studied range from the micro- to the macro- scale (1 microm -- 2 mm). In this work, the effect of evaporation conditions, solution chemistry, and heat transfer within the droplet on pattern formation is examined. In micro-scale deposits of aqueous lysozyme solutions (1 microm < D < 50 microm), the protein motion and the resulting dried residue morphology are highly influenced by the decreased evaporation time of the drop. The effect of electrolytes on pattern formation is also investigated by adding varying concentrations NaCl to the lysozyme solutions. Finally, a novel pattern recognition program is described and implemented which classifies deposit images by their solution chemistries. The results presented in this Ph

  19. Pattern formation in Pseudomonas aeruginosa biofilms

    DEFF Research Database (Denmark)

    Parsek, Matthew R.; Tolker-Nielsen, Tim

    2008-01-01

    Bacteria are capable of forming elaborate multicellular communities called biofilms. Pattern formation in biofilms depends on cell proliferation and cellular migration in response to the available nutrients and other external cues, as well as on self-generated intercellular signal molecules and t...

  20. Taming contact line instability for pattern formation

    Science.gov (United States)

    Deblais, A.; Harich, R.; Colin, A.; Kellay, H.

    2016-08-01

    Coating surfaces with different fluids is prone to instability producing inhomogeneous films and patterns. The contact line between the coating fluid and the surface to be coated is host to different instabilities, limiting the use of a variety of coating techniques. Here we take advantage of the instability of a receding contact line towards cusp and droplet formation to produce linear patterns of variable spacings. We stabilize the instability of the cusps towards droplet formation by using polymer solutions that inhibit this secondary instability and give rise to long slender cylindrical filaments. We vary the speed of deposition to change the spacing between these filaments. The combination of the two gives rise to linear patterns into which different colloidal particles can be embedded, long DNA molecules can be stretched and particles filtered by size. The technique is therefore suitable to prepare anisotropic structures with variable properties.

  1. Emergent pattern formation in an interstitial biofilm

    Science.gov (United States)

    Zachreson, Cameron; Wolff, Christian; Whitchurch, Cynthia B.; Toth, Milos

    2017-01-01

    Collective behavior of bacterial colonies plays critical roles in adaptability, survivability, biofilm expansion and infection. We employ an individual-based model of an interstitial biofilm to study emergent pattern formation based on the assumptions that rod-shaped bacteria furrow through a viscous environment and excrete extracellular polymeric substances which bias their rate of motion. Because the bacteria furrow through their environment, the substratum stiffness is a key control parameter behind the formation of distinct morphological patterns. By systematically varying this property (which we quantify with a stiffness coefficient γ ), we show that subtle changes in the substratum stiffness can give rise to a stable state characterized by a high degree of local order and long-range pattern formation. The ordered state exhibits characteristics typically associated with bacterial fitness advantages, even though it is induced by changes in environmental conditions rather than changes in biological parameters. Our findings are applicable to a broad range of biofilms and provide insights into the relationship between bacterial movement and their environment, and basic mechanisms behind self-organization of biophysical systems.

  2. Morphogenesis and pattern formation in biological systems experiments and models

    CERN Document Server

    Noji, Sumihare; Ueno, Naoto; Maini, Philip

    2003-01-01

    A central goal of current biology is to decode the mechanisms that underlie the processes of morphogenesis and pattern formation. Concerned with the analysis of those phenomena, this book covers a broad range of research fields, including developmental biology, molecular biology, plant morphogenesis, ecology, epidemiology, medicine, paleontology, evolutionary biology, mathematical biology, and computational biology. In Morphogenesis and Pattern Formation in Biological Systems: Experiments and Models, experimental and theoretical aspects of biology are integrated for the construction and investigation of models of complex processes. This collection of articles on the latest advances by leading researchers not only brings together work from a wide spectrum of disciplines, but also provides a stepping-stone to the creation of new areas of discovery.

  3. Geometry-induced protein pattern formation.

    Science.gov (United States)

    Thalmeier, Dominik; Halatek, Jacob; Frey, Erwin

    2016-01-19

    Protein patterns are known to adapt to cell shape and serve as spatial templates that choreograph downstream processes like cell polarity or cell division. However, how can pattern-forming proteins sense and respond to the geometry of a cell, and what mechanistic principles underlie pattern formation? Current models invoke mechanisms based on dynamic instabilities arising from nonlinear interactions between proteins but neglect the influence of the spatial geometry itself. Here, we show that patterns can emerge as a direct result of adaptation to cell geometry, in the absence of dynamical instability. We present a generic reaction module that allows protein densities robustly to adapt to the symmetry of the spatial geometry. The key component is an NTPase protein that cycles between nucleotide-dependent membrane-bound and cytosolic states. For elongated cells, we find that the protein dynamics generically leads to a bipolar pattern, which vanishes as the geometry becomes spherically symmetrical. We show that such a reaction module facilitates universal adaptation to cell geometry by sensing the local ratio of membrane area to cytosolic volume. This sensing mechanism is controlled by the membrane affinities of the different states. We apply the theory to explain AtMinD bipolar patterns in [Formula: see text] EcMinDE Escherichia coli. Due to its generic nature, the mechanism could also serve as a hitherto-unrecognized spatial template in many other bacterial systems. Moreover, the robustness of the mechanism enables self-organized optimization of protein patterns by evolutionary processes. Finally, the proposed module can be used to establish geometry-sensitive protein gradients in synthetic biological systems.

  4. Pattern Formation on Networks: from Localised Activity to Turing Patterns

    Science.gov (United States)

    McCullen, Nick; Wagenknecht, Thomas

    2016-06-01

    Networks of interactions between competing species are used to model many complex systems, such as in genetics, evolutionary biology or sociology and knowledge of the patterns of activity they can exhibit is important for understanding their behaviour. The emergence of patterns on complex networks with reaction-diffusion dynamics is studied here, where node dynamics interact via diffusion via the network edges. Through the application of a generalisation of dynamical systems analysis this work reveals a fundamental connection between small-scale modes of activity on networks and localised pattern formation seen throughout science, such as solitons, breathers and localised buckling. The connection between solutions with a single and small numbers of activated nodes and the fully developed system-scale patterns are investigated computationally using numerical continuation methods. These techniques are also used to help reveal a much larger portion of of the full number of solutions that exist in the system at different parameter values. The importance of network structure is also highlighted, with a key role being played by nodes with a certain so-called optimal degree, on which the interaction between the reaction kinetics and the network structure organise the behaviour of the system.

  5. Electrically induced structure formation and pattern transfer

    Science.gov (United States)

    Schäffer, Erik; Thurn-Albrecht, Thomas; Russell, Thomas P.; Steiner, Ullrich

    2000-02-01

    The wavelength of light represents a fundamental technological barrier to the production of increasingly smaller features on integrated circuits. New technologies that allow the replication of patterns on scales less than 100nm need to be developed if increases in computing power are to continue at the present rate. Here we report a simple electrostatic technique that creates and replicates lateral structures in polymer films on a submicrometre length scale. Our method is based on the fact that dielectric media experience a force in an electric field gradient. Strong field gradients can produce forces that overcome the surface tension in thin liquid films, inducing an instability that features a characteristic hexagonal order. In our experiments, pattern formation takes place in polymer films at elevated temperatures, and is fixed by cooling the sample to room temperature. The application of a laterally varying electric field causes the instability to be focused in the direction of the highest electric field. This results in the replication of a topographically structured electrode. We report patterns with lateral dimensions of 140nm, but the extension of the technique to pattern replication on scales smaller than 100nm seems feasible.

  6. MEDICAL STUDENTS’ FEEDBACK ABOUT FORMATIVE ASSESSMENT PATTERN

    Directory of Open Access Journals (Sweden)

    Navajothi

    2016-03-01

    Full Text Available BACKGROUND Pharmacology is the toughest subject in the II MBBS syllabus. Students have to memorise a lot about the drugs’ name and classification. We are conducting internal assessment exams after completion of each system. Number of failures will be more than 60% in the internal assessments conducted during first six months of II MBBS course. AIM To assess the formative assessment pattern followed in our institution with the students’ feedback and modify the pattern according to the students’ feedback. SETTINGS & DESIGN Prospective Observational Study conducted at Department of Pharmacology, Government Sivagangai Medical College, Sivagangai, Tamil Nadu. MATERIALS AND METHODS Questionnaire was prepared and distributed to the 300 students of Government Sivagangai Medical College and feedback was collected. Data collected was analysed in Microsoft Excel 2007 version. RESULTS Received feedback from 274 students. Most (80% of the students wanted to attend the tests in all systems. Monthly assessment test was preferred by 47% of the students. Students who preferred to finish tests before holidays was 57%. Most (56% of the students preferred tests for 1 hour. Multiple choice question (MCQ type was preferred by 43%, which is not a routine question pattern. Only 7% preferred viva. Recall type of questions was preferred by 41% of the students. CONCLUSION In our institution, internal assessment is conducted as per the students’ mind setup. As the feedback has been the generally followed one, we will add MCQs in the forthcoming tests. Application type questions will be asked for more marks than Recall type of questions.

  7. A new mathematical model for pattern formation by cranial sutures.

    Science.gov (United States)

    Yoshimura, Kenji; Kobayashi, Ryo; Ohmura, Tomohisa; Kajimoto, Yoshinaga; Miura, Takashi

    2016-11-07

    Cranial sutures are narrow mesenchymal tissues that connect skull bones to each other. Given that they serve as growth centers in the skull, these undifferentiated tissues play crucial roles in skull development. Cranial sutures are also of clinical importance, because the premature fusion of skull bones results in a pathological condition called craniosynostosis. In newborns, skull sutures are wide and straight; during adolescence, they become thinner and start winding to form an interdigitating pattern. From a functional aspect, as the degree of interdigitation becomes larger, the strength of the connection between bones increases. However, the mechanisms underlying the maintenance of mesenchymal narrow bands or formation of interdigitation remain poorly understood. In the present study, we presented a new mathematical model that can reproduce the suture width maintenance and interdigitation formation. We can predict the width of the mesenchyme bands and wavelengths of suture interdigitations from the model. Copyright © 2016 Elsevier Ltd. All rights reserved.

  8. Pattern formation in confined chemical gardens

    Science.gov (United States)

    De Wit, Anne; Haudin, Florence; Brau, Fabian; Cartwright, Julyan

    2014-05-01

    Chemical gardens are plant-like mineral structures first described in the seventeenth century and popularly known from chemistry sets for children. They are classically grown in three-dimensional containers by placing a solid metal-salt seed into a silicate solution. When the metal salt starts dissolving in the silicate solution, a semi-permeable membrane forms by precipitation across which water is pumped by osmosis from the silicate solution into the metal salt solution, further dissolving the salt. Above a given pressure, the membrane breaks. The dissolved metal salt solution being generally less dense than the reservoir silicate solution, it rises as a buoyant jet through the broken membrane and further precipitates in contact with the silicate solution, producing a collection of mineral forms that resemble a garden. Such gardens are the subject of increased interest as a model system to understand pattern formation in sea-ice brinicles and hydrothermal vents on the seafloor, among others. All these self-organized precipitation structures at the interface between chemistry, fluid dynamics and mechanics share indeed common chemical, mechanical and electrical properties. In this framework, we study experimentally spatial patterns resulting from the growth of chemical gardens in confined quasi-two-dimensional (2D) geometries upon radial injection of a metallic salt solution into a silicate solution in a horizontal Hele-Shaw cell. We find a large variety of patterns including spirals, fingers, worms, filiform tubes, and flower-like patterns. By exploring the phase space of reactant concentrations and injection flow rates, we observe transitions between these spatio-temporal structures resulting from a coupling between the precipitation reaction, mechanical effects and hydrodynamic instabilities.

  9. Dynamic membrane structure induces temporal pattern formation.

    Science.gov (United States)

    Lippoldt, J; Händel, C; Dietrich, U; Käs, J A

    2014-10-01

    The understanding of temporal pattern formation in biological systems is essential for insights into regulatory processes of cells. Concerning this problem, the present work introduces a model to explain the attachment/detachment cycle of MARCKS and PKC at the cell membrane, which is crucial for signal transduction processes. Our model is novel with regard to its driving mechanism: Structural changes within the membrane fuel an activator-inhibitor based global density oscillation of membrane related proteins. Based on simulated results of our model, phase diagrams were generated to illustrate the interplay of MARCKS and PKC. They predict the oscillatory behavior in the form of the number of peaks, the periodic time, and the damping constant depending on the amounts of MARCKS and PKC, respectively. The investigation of the phase space also revealed an unexpected intermediate state prior to the oscillations for high amounts of MARCKS in the system. The validation of the obtained results was carried out by stability analysis, which also accounts for further enhanced understanding of the studied system. It was shown, that the occurrence of the oscillating behavior is independent of the diffusion and the consumption of the reactants. The diffusion terms in the used reaction-diffusion equations only act as modulating terms and are not required for the oscillation. The hypothesis of our work suggests a new mechanism of temporal pattern formation in biological systems. This mechanism includes a classical activator-inhibitor system, but is based on the modifications of the membrane structure, rather than a reaction-diffusion system. Copyright © 2014 Elsevier B.V. All rights reserved.

  10. The LLE, pattern formation and a novel coherent source

    Science.gov (United States)

    Castelli, Fabrizio; Brambilla, Massimo; Gatti, Alessandra; Prati, Franco; Lugiato, Luigi A.

    2017-04-01

    The LLE was introduced in order to provide a paradigmatic model for spontaneous spatial pattern formation in the field of nonlinear optics. In the first part of this paper we describe in details its historical evolution. We underline, first of all, that the multimode instability of optical bistability represents an important precursor of the LLE. Next, we illustrate how the original LLE was conceived in order to describe pattern formation in the planes transverse with respect to the longitudinal direction of propagation of light in the nonlinear medium contained in the optical cavity. We emphasize, in particular, the crucial role of the low transmission limit (also called mean field limit or uniform field limit in the literature) in determining the simplicity of the equation. In discussing transverse pattern formation in the LLE, we underline incidentally the presence of very important quantum aspects related to squeezing of quantum fluctuations and to quantum imaging. We consider not only the case of global patterns but also localized structures (cavity solitons and their control). Then we turn to the temporal/longitudinal version of the LLE, formulated by Haelterman et al. [H. Haelterman, S. Trillo, S. Wabnitz, Opt. Commun. 91, 401 (1992)], and to its equivalence with the transverse LLE in 1D, discussing especially the phenomenon of temporal cavity solitons, their experimental observation and their control. Finally for the first part we turn to the very recent topic of broadband frequency combs, observed in a versatile multiwavelength coherent source (driven Kerr microcavity), which is raising a lot of interest and of research activities because of its very favourable physical characteristics, which support quite promising applicative perspectives. Kerr microcavities realize in an ideal manner the basic assumptions of the LLE, and the spontaneous formation of travelling patterns along the microcavity is the crucial mechanism which creates the combs and governs

  11. Effects of patterned topography on biofilm formation

    Science.gov (United States)

    Vasudevan, Ravikumar

    2011-12-01

    Bacterial biofilms are a population of bacteria attached to each other and irreversibly to a surface, enclosed in a matrix of self-secreted polymers, among others polysaccharides, proteins, DNA. Biofilms cause persisting infections associated with implanted medical devices and hospital acquired (nosocomial) infections. Catheter-associated urinary tract infections (CAUTIs) are the most common type of nosocomial infections accounting for up to 40% of all hospital acquired infections. Several different strategies, including use of antibacterial agents and genetic cues, quorum sensing, have been adopted for inhibiting biofilm formation relevant to CAUTI surfaces. Each of these methods pertains to certain types of bacteria, processes and has shortcomings. Based on eukaryotic cell topography interaction studies and Ulva linza spore studies, topographical surfaces were suggested as a benign control method for biofilm formation. However, topographies tested so far have not included a systematic variation of size across basic topography shapes. In this study patterned topography was systematically varied in size and shape according to two approaches 1) confinement and 2) wetting. For the confinement approach, using scanning electron microscopy and confocal microscopy, orienting effects of tested topography based on staphylococcus aureus (s. aureus) (SH1000) and enterobacter cloacae (e. cloacae) (ATCC 700258) bacterial models were identified on features of up to 10 times the size of the bacterium. Psuedomonas aeruginosa (p. aeruginosa) (PAO1) did not show any orientational effects, under the test conditions. Another important factor in medical biofilms is the identification and quantification of phenotypic state which has not been discussed in the literature concerning bacteria topography characterizations. This was done based on antibiotic susceptibility evaluation and also based on gene expression analysis. Although orientational effects occur, phenotypically no difference

  12. Features of the formation of the bodily aspect of gender identity in men

    Directory of Open Access Journals (Sweden)

    Harlanova M.M.

    2015-11-01

    Full Text Available The article examines the peculiarities of the bodily aspect of gender identity in men. The urgency of this work due to the fact that currently in Russia to study the influence of the bodily aspect to the whole structure of gender identity is given little attention. At the present time the problem of studying the physicality involved in domestic psychologists: Arina G. A., V. V. Nikolaev, A. S. Kostov, A. N. Borojevic, B. T. Sokolov, V. Yu., Baskakov, who agree in opinion on the necessity to study the influence of the morpho-biological patterns of gender identity, her social and personal "add-on" – of sex-role stereotypes, perceptions, behavior, preferences. However, studies supporting their interaction was not performed [7]. In the paper the following definitions: "gender identity", "gender", "differential socialization", "the Adonis complex". Produced comprehensive analysis of foreign sources for a detailed understanding of the studied phenomenon; analysis of the structural components and characteristics of the formation of the bodily aspect of gender identity in men with the help of specifically chosen tutorials. Discovered the distinctive features of the formation of the bodily aspect of gender identity in men and their reflection in sex-role behavior. We assume that men who are not satisfied with the perception of his own body, prone to distorted perceptions of sex-role images. The data obtained can provide the basis and prospects for development of programs of prevention, diagnostics and correction.

  13. Ecological aspects of the use of lost foam patterns

    Directory of Open Access Journals (Sweden)

    Z. Żółkiewicz

    2010-07-01

    Full Text Available The paper discusses some aspects of ecology in the use of lost foam patterns for piece production of large castings poured from ferrousalloys under the conditions of Metalodlew SA. Foundry. The technological processes used in the manufacture of castings are related with numerous hazards. Numerous problems requiring prompt solution occur also during the process of foundry mould pouring, to mention only various contaminants, air pollution, noise and other factors harmful to the human health and natural environment. Varioustechnological processes cause strenuous work conditions in foundry shops. Many of the publications that have appeared so far dealing withthe problems of environmental protection and hard work conditions in foundries [1, 2, 3, 4, 5, 6, 7, 8, 9] discuss in both general anddetailed way problems related with various pollutants, noise and other factors harmful to the human health and natural environment,responsible for hazards faced by foundry workers. Studies carried out by various R&D centres are mainly focussed on the problem of howto reduce the harmful effect of technological processes on the environment through modification of the already existing or development of new ecological and energy-saving materials and technologies. This paper shows the opportunities and threats resulting from the application of the Lost Foam Process in a foundry, which up to now has been using a more traditional technology.

  14. Formation of colloidal semiconductor nanocrystals. The aspect of nucleation

    Energy Technology Data Exchange (ETDEWEB)

    Kudera, S.

    2007-08-17

    The present work describes different techniques to control some major parameters of colloidal nanocrystals. The individual techniques rely on the manipulation of the nucleation event. The sensitive control of the nanocrystals' size and shape is discussed. Furthermore the formation of hybrid nanocrystals composed of different materials is presented. The synthesis technique for the production of the different samples involves organic solvents and surfactants and reactions at elevated temperatures. The presence of magic size clusters offers a possibility to control the size of the nanocrystals even at very small dimensions. The clusters produced comprise ca. 100 atoms. In the case of CdSe, nanocrystals of this size emit a blue fluorescence and therefore extend the routinely accessible spectrum for this material over the whole visible range. Samples fluorescing in the spectral range from green to red are produced with standard recipes. In this work a reaction scheme for magic size clusters is presented and a theoretical model to explain the particular behaviour of their growth dynamics is discussed. The samples are investigated by optical spectroscopy, transmission electron microscopy, X-ray diffraction and elemental analysis. A method to form branched nanocrystals is discussed. The branching point is analysed by high resolution transmission electron microscopy and proves for the occurrence of a multiple twinned structure are strengthened by simulation of the observed patterns. Two different techniques to generate nanocrystals of this type are presented. The first relies on a seeded growth approach in which the nucleation of the second material is allowed only on de ned sites of the seeds. The second technique uses the tips of pre-formed nano-dumbbells as sacrificial domains. The material on the tips is replaced by gold. Hybrid materials are formed by a seeded-growth mechanism. Pre-formed nanocrystals provide the nucleation sites for the second material. (orig.)

  15. Pattern formation by dewetting and evaporating sedimenting suspensions

    NARCIS (Netherlands)

    Habibi, M.; Moller, P.; Fall, A.; Rafaï, S.; Bonn, D.

    2012-01-01

    Pattern formation from drying droplets containing sedimenting particles and dewetting of thin films of such suspensions was studied. The dewetting causes the formation of finger-like patterns near the contact line which leave behind a deposit of branches. We find that the strikingly low speed of

  16. Mathematical study on robust tissue pattern formation in growing epididymal tubule.

    Science.gov (United States)

    Hirashima, Tsuyoshi

    2016-10-21

    Tissue pattern formation during development is a reproducible morphogenetic process organized by a series of kinetic cellular activities, leading to the building of functional and stable organs. Recent studies focusing on mechanical aspects have revealed physical mechanisms on how the cellular activities contribute to the formation of reproducible tissue patterns; however, the understanding for what factors achieve the reproducibility of such patterning and how it occurs is far from complete. Here, I focus on a tube pattern formation during murine epididymal development, and show that two factors influencing physical design for the patterning, the proliferative zone within the tubule and the viscosity of tissues surrounding to the tubule, control the reproducibility of epididymal tubule pattern, using a mathematical model based on experimental data. Extensive numerical simulation of the simple mathematical model revealed that a spatially localized proliferative zone within the tubule, observed in experiments, results in more reproducible tubule pattern. Moreover, I found that the viscosity of tissues surrounding to the tubule imposes a trade-off regarding pattern reproducibility and spatial accuracy relating to the region where the tubule pattern is formed. This indicates an existence of optimality in material properties of tissues for the robust patterning of epididymal tubule. The results obtained by numerical analysis based on experimental observations provide a general insight on how physical design realizes robust tissue pattern formation. Copyright © 2016 Elsevier Ltd. All rights reserved.

  17. Pattern formation by a moving morphogen source

    Science.gov (United States)

    Zartman, Jeremiah J.; Cheung, Lily S.; Niepielko, Matthew G.; Bonini, Christine; Haley, Benjamin; Yakoby, Nir; Shvartsman, Stanislav Y.

    2011-08-01

    During Drosophila melanogaster oogenesis, the follicular epithelium that envelops the germline cyst gives rise to an elaborate eggshell, which houses the future embryo and mediates its interaction with the environment. A prominent feature of the eggshell is a pair of dorsal appendages, which are needed for embryo respiration. Morphogenesis of this structure depends on broad, a zinc-finger transcription factor, regulated by the EGFR pathway. While much has been learned about the mechanisms of broad regulation by EGFR, current understanding of processes that shape the spatial pattern of broad expression is incomplete. We propose that this pattern is defined by two different phases of EGFR activation: an early, posterior-to-anterior gradient of EGFR signaling sets the posterior boundary of broad expression, while the anterior boundary is set by a later phase of EGFR signaling, distributed in a dorsoventral gradient. This model can explain the wild-type pattern of broad in D. melanogaster, predicts how this pattern responds to genetic perturbations, and provides insight into the mechanisms driving diversification of eggshell patterning. The proposed model of the broad expression pattern can be used as a starting point for the quantitative analysis of a large number of gene expression patterns in Drosophila oogenesis.

  18. Sequential pattern formation governed by signaling gradients

    CERN Document Server

    Jörg, David J; Jülicher, Frank

    2016-01-01

    Rhythmic and sequential segmentation of the embryonic body plan is a vital developmental patterning process in all vertebrate species. However, a theoretical framework capturing the emergence of dynamic patterns of gene expression from the interplay of cell oscillations with tissue elongation and shortening and with signaling gradients, is still missing. Here we show that a set of coupled genetic oscillators in an elongating tissue that is regulated by diffusing and advected signaling molecules can account for segmentation as a self-organized patterning process. This system can form a finite number of segments and the dynamics of segmentation and the total number of segments formed depend strongly on kinetic parameters describing tissue elongation and signaling molecules. The model accounts for existing experimental perturbations to signaling gradients, and makes testable predictions about novel perturbations. The variety of different patterns formed in our model can account for the variability of segmentatio...

  19. Regular pattern formation in real ecosystems

    NARCIS (Netherlands)

    Rietkerk, M.; Van de Koppel, J.

    2008-01-01

    Localized ecological interactions can generate striking large-scale spatial patterns in ecosystems through spatial self-organization. Possible mechanisms include oscillating consumer–resource interactions, localized disturbance-recovery processes and scale-dependent feedback. Despite abundant

  20. Pattern formation - Instabilities in sand ripples

    DEFF Research Database (Denmark)

    Hansen, J. L.; v. Hecke, M.; Haaning, A.

    2001-01-01

    Sand ripples are seen below shallow wavy water and are formed whenever water oscillates over a bed of sand. Here we analyse the instabilities that can upset this perfect patterning when the ripples are subjected to large changes in driving amplitude or frequency, causing them to deform both...

  1. Pattern formation in arrays of chemical oscillators

    Indian Academy of Sciences (India)

    The spatiotemporal patterns obtained include clustering, mixed dynamics, inhomogeneous steady states and amplitude death. ... Amplitude death (AD) results in a homogeneous steady state, where all oscillators go to identical steady states ..... Barring the boundary cells, one observes near phase flip and near synchrony ...

  2. Satisfaction with job aspects: Do patterns change over time?

    National Research Council Canada - National Science Library

    Spagnoli, Paola; Caetano, Antonio; Santos, Susana Correia

    2012-01-01

    ...). The predicted model was tested using multi-group confirmatory factor analysis and a series of ANOVA was carried out to test differences regarding the job satisfaction aspects across the three waves...

  3. Aspect oriented implementation of design patterns using metadata ...

    African Journals Online (AJOL)

    Design patterns are assumed as the general solutions for Object-Oriented matters. They assist in software complexity management and serve as a bridge among software designers as well. These properties have led the patterns to be introduced as a choice in order to prove new technologies. Successful implementations ...

  4. Modern Aspects of Healthy Lifestyle Formation in Preschool Children

    Directory of Open Access Journals (Sweden)

    Natalya V. Mirza

    2013-01-01

    Full Text Available The article considers topical issues of healthy lifestyle formation in preschool children. Physical training socializes children. Solving the problems of physical training contributes to the comprehensive education of a child, aimed at physical, intellectual, spiritual and emotional development, as well as psychophysical preparedness for work and study at school.

  5. Thermodynamic aspects of nanostructured Ti5Si3 formation during ...

    Indian Academy of Sciences (India)

    Also a thermodynamic analysis of the process was carried out using Miedema model. The results showed that in the nominal composition of Ti5Si3 intermetallic phase (Si = 0.375), formation of an intermetallic compound has the lowest Gibbs free energy rather than solid solution or amorphous phases. So the MA product ...

  6. SOCIO-EDUCATIONAL ASPECTS OF THE WORKING MAN FORMATION.

    Directory of Open Access Journals (Sweden)

    Y. F. Zeyer

    2013-01-01

    Full Text Available The paper analyzes a new for the Russian anthropology concept of the «working man», introduced in the Urals along with the propagation of a social and political movement «For the Working Man Protection»; the semantic content of the «man» and «labor» notions being observed as well as the process and problems of the working man formation in the modern world.The author emphasizes the asymmetry of the socio-economic and vocational educational infrastructure, along with the contradictions between the labor market demands for the technical and technological profile workers and the existing educational qualification structure of vocational schools.In author's opinion, the disorganization of labor training in comprehensive school and deficiencies of vocational education hinder the process of the industrial working man formation. The professional orientation system is criticized for being unable to meet the demands of modern economy and provide the young people with the adequate concept of the working career.For overcoming the above problems affecting the working man formation, the paper recommends modernization of the labor training system in comprehensive schools, reformation of vocational training, and renovation of professional orientation system. The special emphasis is given to the continuing training of the working man. 

  7. Liesegang patterns: Complex formation of precipitate in an electric ...

    Indian Academy of Sciences (India)

    Formation of 1D Liesegang patterns was studied numerically in precipitation and reversible complex formation of precipitate scenarios in an electric field. The Ostwald's supersaturation model reported by Büki, Kárpáti-Smidróczki and Zrínyi (BKZ model) was extended further. In the presence of an electric field the position of ...

  8. Patterns of Swahili Verbal Derivatives: An Analysis of their Formation

    African Journals Online (AJOL)

    This paper examines Swahili verbal derived forms in order to find out the formative suffixes which they can take and try to establish their pattern. Of interest to us here is to look at the rule governing the formation of Swahili verbal derivatives, and the extent to which such words have been activated by the speakers of the ...

  9. The role of auxin signaling in early embryo pattern formation

    NARCIS (Netherlands)

    Smit, Margot E.; Weijers, Dolf

    2015-01-01

    Pattern formation of the early Arabidopsis embryo generates precursors to all major cell types, and is profoundly controlled by the signaling molecule auxin. Here we discuss recent milestones in our understanding of auxin-dependent embryo patterning. Auxin biosynthesis, transport and response

  10. (The physics of pattern formation at liquid interfaces)

    Energy Technology Data Exchange (ETDEWEB)

    1990-01-01

    This paper discusses pattern formation at liquid interfaces and interfaces within disordered materials. The particular topics discussed are: a racetrack for competing viscous fingers; an experimental realization of periodic boundary conditions; what sets the length scale for patterns between miscible liquids; the fractal dimension of radial Hele-Shaw patterns; detailed analyses of low-contrast Saffman-Taylor flows; and the wetting/absorption properties of polystyrene spheres in binary liquid mixtures. (LSP)

  11. Polariton Pattern Formation and Photon Statistics of the Associated Emission

    Directory of Open Access Journals (Sweden)

    C. E. Whittaker

    2017-08-01

    Full Text Available We report on the formation of a diverse family of transverse spatial polygon patterns in a microcavity polariton fluid under coherent driving by a blue-detuned pump. Patterns emerge spontaneously as a result of energy-degenerate polariton-polariton scattering from the pump state to interfering high-order vortex and antivortex modes, breaking azimuthal symmetry. The interplay between a multimode parametric instability and intrinsic optical bistability leads to a sharp spike in the value of second-order coherence g^{(2}(0 of the emitted light, which we attribute to the strongly superlinear kinetics of the underlying scattering processes driving the formation of patterns. We show numerically by means of a linear stability analysis how the growth of parametric instabilities in our system can lead to spontaneous symmetry breaking, predicting the formation and competition of different pattern states in good agreement with experimental observations.

  12. Kinetic and structural aspects of tantalum hydride formation

    Directory of Open Access Journals (Sweden)

    R. DIMITRIJEVIC

    2003-09-01

    Full Text Available Tantalum hydrides of various composition were synthesized by equilibrating tantalum with hydrogen at six different temperatures from 573 to 823 K, under a constant hydrogen pressure of 1 bar. Both the exact Ta/H mole ratios and the kinetic parameters of hydriding were determined on the basis of the dependence of the H/Ta mole ratio on time. The influence of stoichiometry on the appearance of X-ray powder diffractograms at room temperature was studied. As a consequence of hydriding, for ratios H/Ta > 0.2, the original bcc Ta-lattice undergoes distortion, manifesting itself as both a shift and a splitting of the X-ray patterns in the X-ray diffractograms. For samples with H/Ta < 0.2, the appearance of some superstructure reflections at low Bragg angles was noted, which suggests a long range ordering of hydrogen with orthorhombic symmetry.

  13. Molecular aspect of good eating quality formation in Japonica rice.

    Directory of Open Access Journals (Sweden)

    Ming-Mao Sun

    quality, but GBSS1 decreased eating quality. The results indicated the possibility of developing high palatability cultivars through modification of key genes related to japonica rice eating quality formation in starch biosynthesis.

  14. Pattern formation via intermittence from microscopic deterministic dynamics.

    Science.gov (United States)

    Hernández, Marco; Escaff, Daniel; Finger, Ricardo

    2012-05-01

    We propose a one-dimensional lattice model, inspired by population dynamics interaction. The model combines a variable coupling range with the Allee effect. The system is capable of exhibiting pattern formation that is similar to what occurs in similar continuous models for population dynamics. However, the formation features are quite different; in this case the pattern emerges from a disorder state via intermittence. We analytically estimated the selected wavelength of the formed pattern and numerically studied fluctuations around the mean wavelength. We also comment on the relationship between intermittence and the edge of chaos as well as sensitivity to initial conditions. Next, we present an analytical prediction of the influence of the world size on the intermittent regime which is in good agreement with the numerical observations. Moreover, the last calculation provided us an alternative way to compute the pattern wavelength. Finally, we discuss the continuous limit of our lattice model.

  15. Dynamic aspects of the ozone anomalies formation in the Antarctic region

    Science.gov (United States)

    Lapo, Palina; Svetashev, Alexander; Krasouski, Alexander; Barodka, Siarhei

    2013-04-01

    The ozone layer is a unique shield protecting all living creatures on our planet. However, it has become subject of active research only after the first ozone hole was discovered over Antarctica. Ozone layer depletion over Antarctica is an even more acute problem, since Antarctica is the only continent having a very endemic, rich nature with least human impact. It has been shown that extreme temperature conditions in polar stratosphere and polar stratospheric clouds formation in addition to photochemical reactions involving ozone and ozone-depleting substances act as a primary cause of ozone-layer depletion. In the present study we review the dynamic aspects of ozone anomalies formation in the Antarctic region by numerical simulation. For that purpose we consider the ozone hole which formed over Antarctica in the period of September-October 2011. Using the WRF modelling system and its PolarWRF modification, we simulate meteorological situation over Antarctica in the time periods of ozone hole formation and destruction, and also in the time period when the ozone hole is absent. Based on the modelling results, we argue that a cold air mass (anticyclone) formed over the territory of Antarctica during the formation of the ozone hole. Absence of solar irradiation and strong cooling of the atmosphere contribute to formation of such meteorological conditions during the Antarctic winter. In the stratosphere there is a region of low atmospheric pressure, which is clearly visible on a pressure topography map. Under the effect of the tropospheric and the stratospheric vortices, air patches movement leads to ozone concentration decrease and formation of the ozone anomalies. From the WRF system modelling results we calculate several basic meteorological characteristics and analyze surface maps and aerological (skew-T) diagrams for atmospheric variables with the NCL scripting language. We conclude that atmospheric dynamics has an impact on ozone depression. Also, we evaluate the

  16. Fluctuation-Induced Pattern Formation in a Surface Reaction

    DEFF Research Database (Denmark)

    Starke, Jens; Reichert, Christian; Eiswirth, Markus

    2006-01-01

    Spontaneous nucleation, pulse formation, and propagation failure have been observed experimentally in CO oxidation on Pt(110) at intermediate pressures ($\\approx 10^{-2}$mbar). This phenomenon can be reproduced with a stochastic model which includes temperature effects. Nucleation occurs randomly...... due to fluctuations in the reaction processes, whereas the subsequent damping out essentially follows the deterministic path. Conditions for the occurence of stochastic effects in the pattern formation during CO oxidation on Pt are discussed....

  17. Phyllotactic pattern formation in early stages of cactus ontogeny

    Directory of Open Access Journals (Sweden)

    Edyta M. Gola

    2011-01-01

    Full Text Available Representatives of the family Cactaceae are characterized by a wide range of phyllotaxis. To assess the origin of this diversity, early stages of phyllotactic pattern formation were examined in seedlings. The analysis of the sequence of areole initiation revealed intertribal differences. In seedlings from the Trichocereeae (Gymnocalycium, Rebutia and Notocacteae (Parodia tribes, two opposite cotyledonal areoles developed as the first elements of a pattern. Usually, next pair of areoles was initiated perpendicularly to cotyledonal areoles, starting the decussate pattern. This pattern was subsequently transformed into bijugate or into simple spiral phyllotaxis. In seedlings from the Cacteae tribe (Mammillaria and Thelocactus, cotyledonal areoles were never observed and the first areoles always appeared in the space between cotyledons. It was either areole pair (mainly in Mammillaria, starting a decussate pattern, or a single areole (mainly in Thelocactus quickly followed by areoles spirally arranged, usually in accordance with the main Fibonacci phyllotaxis. Differences in the initial stages of pattern formation do not fully explain the phyllotaxis diversity in mature cacti. Only two, the most common phyllotactic patterns occurred in the early development of studied seedlings, i.e. the main Fibonacci and the decussate pattern. Discrepancy in the range of phyllotactic spectra in seedlings and in mature plants suggests that phyllotaxis diversity emerges during further plant growth. Initial phyllotactic transformations, occurring already in the very early stages, indicate great plasticity of cactus growth and seem to support the hypothesis of the ontogenetic increase of phyllotaxis diversity due to transformations.

  18. Spongiosa Primary Development: A Biochemical Hypothesis by Turing Patterns Formations

    Directory of Open Access Journals (Sweden)

    Oscar Rodrigo López-Vaca

    2012-01-01

    Full Text Available We propose a biochemical model describing the formation of primary spongiosa architecture through a bioregulatory model by metalloproteinase 13 (MMP13 and vascular endothelial growth factor (VEGF. It is assumed that MMP13 regulates cartilage degradation and the VEGF allows vascularization and advances in the ossification front through the presence of osteoblasts. The coupling of this set of molecules is represented by reaction-diffusion equations with parameters in the Turing space, creating a stable spatiotemporal pattern that leads to the formation of the trabeculae present in the spongy tissue. Experimental evidence has shown that the MMP13 regulates VEGF formation, and it is assumed that VEGF negatively regulates MMP13 formation. Thus, the patterns obtained by ossification may represent the primary spongiosa formation during endochondral ossification. Moreover, for the numerical solution, we used the finite element method with the Newton-Raphson method to approximate partial differential nonlinear equations. Ossification patterns obtained may represent the primary spongiosa formation during endochondral ossification.

  19. Spongiosa Primary Development: A Biochemical Hypothesis by Turing Patterns Formations

    Science.gov (United States)

    López-Vaca, Oscar Rodrigo; Garzón-Alvarado, Diego Alexander

    2012-01-01

    We propose a biochemical model describing the formation of primary spongiosa architecture through a bioregulatory model by metalloproteinase 13 (MMP13) and vascular endothelial growth factor (VEGF). It is assumed that MMP13 regulates cartilage degradation and the VEGF allows vascularization and advances in the ossification front through the presence of osteoblasts. The coupling of this set of molecules is represented by reaction-diffusion equations with parameters in the Turing space, creating a stable spatiotemporal pattern that leads to the formation of the trabeculae present in the spongy tissue. Experimental evidence has shown that the MMP13 regulates VEGF formation, and it is assumed that VEGF negatively regulates MMP13 formation. Thus, the patterns obtained by ossification may represent the primary spongiosa formation during endochondral ossification. Moreover, for the numerical solution, we used the finite element method with the Newton-Raphson method to approximate partial differential nonlinear equations. Ossification patterns obtained may represent the primary spongiosa formation during endochondral ossification. PMID:23193429

  20. Vegetation pattern formation in semi-arid grazing systems

    NARCIS (Netherlands)

    HillerisLambers, R.; Rietkerk, M.G.; Bosch, F. van den; Prins, H.H.T.; Kroon, H. de

    2001-01-01

    Hypotheses about the origin of vegetation pattern formation in semi-arid areas around the world almost all include a common feature of semi-arid areas: the presence of a positive feedback between plant density and water infiltration. We investigate whether this positive feedback and the spatial

  1. Anomalous patterns of formation and distribution of the brachial ...

    African Journals Online (AJOL)

    block Background: Structural variations in the patterns of formation and distribution of the brachial plexus have drawn attentions both in anatomy and anaesthesia. Method: An observational study. Results: The brachial plexus was carefully inspected in both the right and left arms in 90 Nigerian cadavers, comprising of 74 ...

  2. Modelling Global Pattern Formations for Collaborative Learning Environments

    DEFF Research Database (Denmark)

    Grappiolo, Corrado; Cheong, Yun-Gyung; Khaled, Rilla

    2012-01-01

    We present our research towards the design of a computational framework capable of modelling the formation and evolution of global patterns (i.e. group structures) in a population of social individuals. The framework is intended to be used in collaborative environments, e.g. social serious games...

  3. Pattern formations in chaotic spatio-temporal systems

    Indian Academy of Sciences (India)

    4Institute of Applied Physics and Computational Mathematics, Beijing 100088, China. 5Beijing–Hong Kong–Singapore Joint Center of Nonlinear and Complex Systems,. Beijing Normal University Branch, Beijing, China. *Corresponding author. E-mail: ganghu@bnu.edu.cn. Abstract. Pattern formations in chaotic ...

  4. How does tidal flow affect pattern formation in mussel beds?

    Science.gov (United States)

    Sherratt, Jonathan A; Mackenzie, Julia J

    2016-10-07

    In the Wadden Sea, mussel beds self-organise into spatial patterns consisting of bands parallel to the shore. A leading explanation for this phenomenon is that mussel aggregation reduces losses from dislodgement and predation, because of the adherence of mussels to one another. Previous mathematical modelling has shown that this can lead to spatial patterning when it is coupled to the advection from the open sea of algae-the main food source for mussels in the Wadden Sea. A complicating factor in this process is that the advection of algae will actually oscillate with the tidal flow. This has been excluded from previous modelling studies, and the present paper concerns the implications of this oscillation for pattern formation. The authors initially consider piecewise constant ("square-tooth") oscillations in advection, which enables analytical investigation of the conditions for pattern formation. They then build on this to study the more realistic case of sinusoidal oscillations. Their analysis shows that future research on the details of pattern formation in mussel beds will require an in-depth understanding of how the tides affect long-range inhibition among mussels. Copyright © 2016 Elsevier Ltd. All rights reserved.

  5. Dewetting-mediated pattern formation inside the coffee ring

    Science.gov (United States)

    Li, Weibin; Lan, Ding; Wang, Yuren

    2017-04-01

    The rearrangement of particles in the final stage of droplet evaporation has been investigated by utilizing differential interference contrast microscopy and the formation mechanism of a network pattern inside a coffee ring has been revealed. A tailored substrate with a circular hydrophilic domain is prepared to obtain thin liquid film containing monolayer particles. Real-time bottom-view images show that the evolution of a dry patch could be divided into three stages: rupture initiation, dry patch expansion, and drying of the residual liquid. A growing number of dry patches will repeat these stages to form the network patterns inside the ringlike stain. It can be shown that the suction effect promotes the rupture of the liquid film and the formation of the dry patch. The particle-assembling process is totally controlled by the liquid film dewetting and dominated by the surface tension of the liquid film, which eventually determine the ultimate deposition patterns.

  6. Noise induced pattern formation of oscillation growth in traffic flow

    CERN Document Server

    Tian, Junfang; Treiber, Martin

    2016-01-01

    Noise is able to induce diverse patterns in physical and interdisciplinary extended systems. This Letter investigates the role of noise in pattern formation of traffic flow, which is a typical self-driven system far from equilibrium. We demonstrate that noise is necessary to correctly describe the observed spatiotemporal dynamics of growing traffic oscillation in the car following process. A heuristic analysis qualitatively explains the concave growth of the oscillation amplitude along the vehicles of a platoon. Based on this analysis, we propose a simple car-following model containing indifference regions and acceleration noise described by Brownian motion which reproduces well the experimental and empirical observations. Our study indicates that noise might also play an important role in pattern formation in other biological or socio-economic systems that are subject to stochasticity.

  7. Pattern formation of stationary transcellular ionic currents in Fucus

    Science.gov (United States)

    Léonetti, M.; Dubois-Violette, E.; Homblé, F.

    2004-01-01

    Stationary and nonstationary spatiotemporal pattern formations emerging from the cellular electric activity are a common feature of biological cells and tissues. The nonstationary ones are well explained in the framework of the cable model. Inversely, the formation of the widespread self-organized stationary patterns of transcellular ionic currents remains elusive, despite their importance in cell polarization, apical growth, and morphogenesis. For example, the nature of the breaking symmetry in the Fucus zygote, a model organism for the experimental investigation of embryonic pattern formation, is still an open question. Using an electrodiffusive model, we report here an unexpected property of the cellular electric activity: a phase-space domain that gives rise to stationary patterns of transcellular ionic currents at finite wavelength. The cable model cannot predict this instability. In agreement with experiments, the characteristic time is an ionic diffusive one (<2 min). The critical radius is of the same order of magnitude as the cell radius (30 μm). The generic salient features are a global positive differential conductance, a negative differential conductance for one ion, and a difference between the diffusive coefficients. Although different, this mechanism is reminiscent of Turing instability. PMID:15232004

  8. Wavenumber Locking And Pattern Formation In Spatially Forced Systems

    Energy Technology Data Exchange (ETDEWEB)

    Hagberg, Aric [Los Alamos National Laboratory; Meron, Ehud [BEN-GURION UNIV; Manor, Rotem [BEN-GURION UNIV

    2008-01-01

    We study wavenumber locking and pattern formation resulting from weak spatially periodic one-dimensional forcing of two-dimensional systems. We consider systems that support stationary or traveling stripe patterns in the absence of the forcing, and assume that the one-dimensional forcing is aligned with the direction of the stripe patterns. When the forcing wavenumber is about twice as large as the wavenumber of the unforced system we find that the forcing can either select or stabilize a resonant stripe solution at half the forcing wavenumber, or create a new resonant solution. When the wavenumber mismatch is high we find that the wave-vector component of the pattern in the direction of the forcing can stilI lock at half the forcing wavenumber, but a wave-vector component in the orthogonal direction develops to compensate for the total wavenumber. As a result stationary two-dimensional rectangular and oblique patterns form. When the unforced system supports traveling waves resonant rectangular patterns remain stationary but the oblique patterns travel in a direction orthogonal to the traveling-waves.

  9. Clustering and Pattern Formation in Chemorepulsive Active Colloids

    Science.gov (United States)

    Liebchen, Benno; Marenduzzo, Davide; Pagonabarraga, Ignacio; Cates, Michael E.

    2015-12-01

    We demonstrate that migration away from self-produced chemicals (chemorepulsion) generates a generic route to clustering and pattern formation among self-propelled colloids. The clustering instability can be caused either by anisotropic chemical production, or by a delayed orientational response to changes of the chemical environment. In each case, chemorepulsion creates clusters of a self-limiting area which grows linearly with self-propulsion speed. This agrees with recent observations of dynamic clusters in Janus colloids (albeit not yet known to be chemorepulsive). More generally, our results could inform design principles for the self-assembly of chemorepulsive synthetic swimmers and/or bacteria into nonequilibrium patterns.

  10. Clustering and Pattern Formation in Chemorepulsive Active Colloids.

    Science.gov (United States)

    Liebchen, Benno; Marenduzzo, Davide; Pagonabarraga, Ignacio; Cates, Michael E

    2015-12-18

    We demonstrate that migration away from self-produced chemicals (chemorepulsion) generates a generic route to clustering and pattern formation among self-propelled colloids. The clustering instability can be caused either by anisotropic chemical production, or by a delayed orientational response to changes of the chemical environment. In each case, chemorepulsion creates clusters of a self-limiting area which grows linearly with self-propulsion speed. This agrees with recent observations of dynamic clusters in Janus colloids (albeit not yet known to be chemorepulsive). More generally, our results could inform design principles for the self-assembly of chemorepulsive synthetic swimmers and/or bacteria into nonequilibrium patterns.

  11. Pattern formation and coexistence domains for a nonlocal population dynamics

    CERN Document Server

    da Cunha, J A R; Oliveira, F A

    2011-01-01

    In this communication we propose a most general equation to study pattern formation for one-species population and their limit domains in systems of length L. To accomplish this we include non-locality in the growth and competition terms where the integral kernels are now depend on characteristic length parameters alpha and beta. Therefore, we derived a parameter space (alpha,beta) where it is possible to analyze a coexistence curve alpha*=alpha*(\\beta) which delimits domains for the existence (or not) of pattern formation in population dynamics systems. We show that this curve has an analogy with coexistence curve in classical thermodynamics and critical phenomena physics. We have successfully compared this model with experimental data for diffusion of Escherichia coli populations.

  12. Dynamics of transient pattern formation in nematic liquid crystals

    OpenAIRE

    San Miguel Ruibal, Maximino; Sagués i Mestre, Francesc

    1987-01-01

    We analyze the dynamics of a transient pattern formation in the Fréedericksz transition corresponding to a twist geometry. We present a calculation of the time-dependent structure factor based on a dynamical model which incorporates consistently the coupling of the director field with the velocity flow and also the effect of fluctuations. The appearance and development of a characteristic periodicity is described in terms of the time dependence of the maximum of the structure factor. We find ...

  13. Liesegang patterns: Complex formation of precipitate in an electric ...

    Indian Academy of Sciences (India)

    formed precipitate Co(OH)2(s) dissolves due to complex formation in excess ammo- nia. Zrınyi et al [26], Sultan and Panjarian [17] and Hilal and Sultan [27] observed and studied experimentally similar patterns in NaOH/Cr(NO3)3, while Das et al. [28] performed it in KI/HgCl2 system. The aim of this paper is to continue ...

  14. Drying bacterial biosaline patterns capable of vital reanimation upon rehydration: novel hibernating biomineralogical life formations.

    Science.gov (United States)

    Gómez Gómez, José María; Medina, Jesús; Hochberg, David; Mateo-Martí, Eva; Martínez-Frías, Jesús; Rull, Fernando

    2014-07-01

    Water is the fundamental molecule for life on Earth. Thus, the search for hibernating life-forms in waterless environments is an important research topic for astrobiology. To date, however, the organizational patterns containing microbial life in extremely dry places, such as the deserts of Earth, the Dry Valleys of Antarctica, or Mars analog regolith, have been poorly characterized. Here, we report on the formation of bacterial biosaline self-organized drying patterns formed over plastic surfaces. These emerge during the evaporation of sessile droplets of aqueous NaCl salt 0.15 M solutions containing Escherichia coli cells. In the present study, scanning electron microscopy (SEM) and energy dispersive X-ray spectrometry (EDS) analyses indicated that the bacterial cells and the NaCl in these biosaline formations are organized in a two-layered characteristic 3-D architectural morphology. A thin filmlike top layer formed by NaCl conjugated to, and intermingled with, "mineralized" bacterial cells covers a bottom layer constructed by the bulk of the nonmineralized bacterial cells; both layers have the same morphological pattern. In addition, optical microscopic time-lapsed movies show that the formation of these patterns is a kinetically fast process that requires the coupled interaction between the salt and the bacterial cells. Apparently, this mutual interaction drives the generative process of self-assembly that underlies the drying pattern formation. Most notably, the bacterial cells inside these drying self-assembled patterns enter into a quiescent suspended anhydrobiotic state resistant to complete desiccation and capable of vital reanimation upon rehydration. We propose that these E. coli biosaline drying patterns represent an excellent experimental model for understanding different aspects of anhydrobiosis phenomena in bacteria as well as for revealing the mechanisms of bacterially induced biomineralization, both highly relevant topics for the search of life in

  15. Studies of formation and content of the term ‘logistics activities’: theoretical aspects

    OpenAIRE

    IVANOVA M.І.

    2015-01-01

    The investigation of theoretical aspects of formation and content of the term ‘logistics activities’ allowed clarifying the goals, objectives, objects, subjects and components of logistics activities. The paper has shown a system decomposition of the logistics activities at an industrial enterprise and the author’s definition of the term ‘logistics activities’.

  16. Structural and quantitative aspects of radical formation after heavy ion bombardment

    Energy Technology Data Exchange (ETDEWEB)

    Dusemund, B.; Hoffmann, A.K.; Weiland, B.; Huettermann, J. [Klinikum Homburg (Germany). Fachrichtung Biophysik

    1997-09-01

    In this report the authors present a summary of their recent attempts aiming at clarifying some basic structural and quantitative aspects of free radical formation in DNA constituents and in DNA as well as of product analysis from nucleotide model compounds. (orig./MG)

  17. A Model of Filamentous Cyanobacteria Leading to Reticulate Pattern Formation

    Directory of Open Access Journals (Sweden)

    Carlos Tamulonis

    2014-09-01

    Full Text Available The filamentous cyanobacterium, Pseudanabaena, has been shown to produce reticulate patterns that are thought to be the result of its gliding motility. Similar fossilized structures found in the geological record constitute some of the earliest signs of life on Earth. It is difficult to tie these fossils, which are billions of years old, directly to the specific microorganisms that built them. Identifying the physicochemical conditions and microorganism properties that lead microbial mats to form macroscopic structures can lead to a better understanding of the conditions on Earth at the dawn of life. In this article, a cell-based model is used to simulate the formation of reticulate patterns in cultures of Pseudanabaena. A minimal system of long and flexible trichomes capable of gliding motility is shown to be sufficient to produce stable patterns consisting of a network of streams. Varying model parameters indicate that systems with little to no cohesion, high trichome density and persistent movement are conducive to reticulate pattern formation, in conformance with experimental observations.

  18. Numerical approaches to model perturbation fire in turing pattern formations

    Science.gov (United States)

    Campagna, R.; Brancaccio, M.; Cuomo, S.; Mazzoleni, S.; Russo, L.; Siettos, K.; Giannino, F.

    2017-11-01

    Turing patterns were observed in chemical, physical and biological systems described by coupled reaction-diffusion equations. Several models have been formulated proposing the water as the causal mechanism of vegetation pattern formation, but this isn't an exhaustive hypothesis in some natural environments. An alternative explanation has been related to the plant-soil negative feedback. In Marasco et al. [1] the authors explored the hypothesis that both mechanisms contribute in the formation of regular and irregular vegetation patterns. The mathematical model consists in three partial differential equations (PDEs) that take into account for a dynamic balance between biomass, water and toxic compounds. A numerical approach is mandatory also to investigate on the predictions of this kind of models. In this paper we start from the mathematical model described in [1], set the model parameters such that the biomass reaches a stable spatial pattern (spots) and present preliminary studies about the occurrence of perturbing events, such as wildfire, that can affect the regularity of the biomass configuration.

  19. Pattern formation of a nonlocal, anisotropic interaction model

    KAUST Repository

    Burger, Martin

    2017-11-24

    We consider a class of interacting particle models with anisotropic, repulsive–attractive interaction forces whose orientations depend on an underlying tensor field. An example of this class of models is the so-called Kücken–Champod model describing the formation of fingerprint patterns. This class of models can be regarded as a generalization of a gradient flow of a nonlocal interaction potential which has a local repulsion and a long-range attraction structure. In contrast to isotropic interaction models the anisotropic forces in our class of models cannot be derived from a potential. The underlying tensor field introduces an anisotropy leading to complex patterns which do not occur in isotropic models. This anisotropy is characterized by one parameter in the model. We study the variation of this parameter, describing the transition between the isotropic and the anisotropic model, analytically and numerically. We analyze the equilibria of the corresponding mean-field partial differential equation and investigate pattern formation numerically in two dimensions by studying the dependence of the parameters in the model on the resulting patterns.

  20. Nonlinear dynamics of pattern formation and pattern recognition in the rabbit olfactory bulb

    Science.gov (United States)

    Baird, Bill

    1986-10-01

    A mathematical model of the process of pattern recognition in the first olfactory sensory cortex of the rabbit is presented. It explains the formation and alteration of spatial patterns in neural activity observed experimentally during classical Pavlovian conditioning. On each inspiration of the animal, a surge of receptor input enters the olfactory bulb. EEG activity recorded at the surface of the bulb undergoes a transition from a low amplitude background state of temporal disorder to coherent oscillation. There is a distinctive spatial pattern of rms amplitude in this oscillation which changes reliably to a second pattern during each successful recognition by the animal of a conditioned stimulus odor. When a new odor is paired as conditioned stimulus, these patterns are replaced by new patterns that stabilize as the animal adapts to the new environment. I will argue that a unification of the theories of pattern formation and associative memory is required to account for these observations. This is achieved in a model of the bulb as a discrete excitable medium with spatially inhomogeneous coupling expressed by a connection matrix. The theory of multiple Hopf bifurcations is employed to find coupled equations for the amplitudes of competing unstable oscillatory modes. These may be created in the system by proper coupling and selectively evoked by specific classes of inputs. This allows a view of limit cycle attractors as “stored” fixed points of a gradient vector field and thereby recovers the more familiar dynamical systems picture of associative memory.

  1. A model for rouleaux pattern formation of red blood cells.

    Science.gov (United States)

    Kobuchi, Y; Ito, T; Ogiwara, A

    1988-01-21

    Human red blood cells (RBCs) in a solution form rouleaux patterns under various conditions. The degree of rouleaux formation depends on, for example, the concentration and molecular weight of added large molecules. We present a two-dimensional discrete cellular space model in which an RBC is represented by a rectangle and differential adhesion is assumed among the longer (a-site), the shorter (b-site) sides of the rectangle and the solvent. The total sum of the adhesion energy is assumed to guide the step-by-step change of the model cell configuration and also define absolutely stable patterns. We compare the set of absolutely stable patterns and cell aggregate patterns for both actual and computer-simulated cases to obtain the basic validity of our framework. Then we proceed to assess the effects of added high polymers to the adhesion parameters. We first note that under suitable conditions, decrease in a-site-solvent affinity is necessary to have complex patterns rather than increase of a-a affinity. The hypothesis that addition of high polymers reduce the a-site-solvent affinity is concomitant with a newly proposed osmotic stress theory. The parameter fitting results for the experimental phase change curves can also be interpreted as supporting more the new theory than existing traditional explanations.

  2. Dynamics of laser induced metal nanoparticle and pattern formation

    Energy Technology Data Exchange (ETDEWEB)

    Peláez, R. J., E-mail: rpelaez@io.cfmac.csic.es; Kuhn, T.; Rodríguez, C. E.; Afonso, C. N. [Laser Processing Group, Instituto de Óptica, CSIC, Serrano 121, 28006 Madrid (Spain)

    2015-02-09

    Discontinuous metal films are converted into either almost round, isolated, and randomly distributed nanoparticles (NPs) or fringed patterns of alternate non transformed film and NPs by exposure to single pulses (20 ns pulse duration and 193 nm wavelength) of homogeneous or modulated laser beam intensity. The dynamics of NPs and pattern formation is studied by measuring in real time the transmission and reflectivity of the sample upon homogeneous beam exposure and the intensity of the diffraction orders 0 and 1 in transmission configuration upon modulated beam exposure. The results show that laser irradiation induces melting of the metal either completely or at regions around intensity maxima sites for homogeneous and modulated beam exposure, respectively, within ≤10 ns. The aggregation and/or coalescence of the initially irregular metal nanostructures is triggered upon melting and continues after solidification (estimated to occur at ≤80 ns) for more than 1 μs. The present results demonstrate that real time transmission rather than reflectivity measurements is a valuable and easy-to-use tool for following the dynamics of NPs and pattern formation. They provide insights on the heat-driven processes occurring both in liquid and solid phases and allow controlling in-situ the process through the fluence. They also evidence that there is negligible lateral heat release in discontinuous films upon laser irradiation.

  3. On Pattern Formation Mechanisms for Lepidopteran Wing Patterns and Mammalian Coat Markings

    Science.gov (United States)

    Murray, J. D.

    1981-10-01

    The patterns on wings of Lepidoptera can be generated with a few pattern elements, but no mechanism has been suggested for producing them. I consider two of the basic patterns, namely, central symmetry and dependent patterns. A biochemically plausible model mechanism is proposed for generating major aspects of these patterns, based on a diffusing morphogen that activates a gene or colour-specific enzyme in a threshold manner to generate a stable heterogeneous spatial pattern. The model is applied to the determination stream hypothesis of Kuhn & von Engelhardt (Wilhelm Roux Arch. Entw Mech. Org. 130, 660 (1933)), and results from the model compared with their microcautery experiments on the pupal wing of Ephestia kuhniella. In the case of dependent patterns, results are compared with patterns on specific Papilionidae. For the same mechanism and a fixed set of parameters I demonstrate the important roles of geometry and scale on the spatial patterns obtained. The results and evidence presented here suggest the existence of diffusion fields of the order of several millimetres, which are very much larger than most embryonic fields. The existence of zones of polarizing activity is also indicated. Colour patterns on animals are considered to be genetically determined, but the mechanism is not known. I have previously suggested that a single mechanism that can exhibit an infinite variety of patterns is a candidate for that mechanism, and proposed that a reaction-diffusion system that can be diffusively driven unstable could be responsible for the laying down of the spacing patterns that generates the prepattern for animal coat markings. For illustrative purposes I consider a practical reaction mechanism, which exhibits substrate inhibition, and show that the geometry and scale of the domain (part of the epidermis) play a crucial role in the structural patterns that result. Patterns are obtained for a selection of geometries, and general features are related to the coat

  4. Competition between randomizing impacts and inelastic collisions in granular pattern formation

    Science.gov (United States)

    Shinbrot, Troy

    1997-10-01

    The flow and mixing of granular materials occur during handling of a wide variety of substances, from pharmaceuticals to cement to cereal grains. The understanding of such flows is, however, considerably more limited than it is for fluids; even basic processes such as tumbling, simple shear and shaking give rise to unexpected results. A case in point is granular pattern formation. A rich variety of patterns, including stripes, squares, hexagons and solitary structures, has been observed in vertically shaken, shallow granular beds. The vertical dynamics responsible for these patterns have been explored, but the role of horizontal motions of the grains is less well understood. Here I present a model of these motions that identifies two aspects as central to pattern formation: the randomization of horizontal velocities by shaking, and the inelastic nature of grain collisions. These two elements alone, even without the influence of gravity, are sufficient to produce organized patterns in the horizontal plane - both those observed and others not yet seen experimentally.

  5. Pattern formation in diffusive excitable systems under magnetic flow effects

    Science.gov (United States)

    Mvogo, Alain; Takembo, Clovis N.; Ekobena Fouda, H. P.; Kofané, Timoléon C.

    2017-07-01

    We study the spatiotemporal formation of patterns in a diffusive FitzHugh-Nagumo network where the effect of electromagnetic induction has been introduced in the standard mathematical model by using magnetic flux, and the modulation of magnetic flux on membrane potential is realized by using memristor coupling. We use the multi-scale expansion to show that the system equations can be reduced to a single differential-difference nonlinear equation. The linear stability analysis is performed and discussed with emphasis on the impact of magnetic flux. It is observed that the effect of memristor coupling importantly modifies the features of modulational instability. Our analytical results are supported by the numerical experiments, which reveal that the improved model can lead to nonlinear quasi-periodic spatiotemporal patterns with some features of synchronization. It is observed also the generation of pulses and rhythmics behaviors like breathing or swimming which are important in brain researches.

  6. Formation mechanisms and characteristics of transition patterns in oblique detonations

    Science.gov (United States)

    Miao, Shikun; Zhou, Jin; Liu, Shijie; Cai, Xiaodong

    2018-01-01

    The transition structures of wedge-induced oblique detonation waves (ODWs) in high-enthalpy supersonic combustible mixtures are studied with two-dimensional reactive Euler simulations based on the open-source program AMROC (Adaptive Mesh Refinement in Object-oriented C++). The formation mechanisms of different transition patterns are investigated through theoretical analysis and numerical simulations. Results show that transition patterns of ODWs depend on the pressure ratio Pd/Ps, (Pd, Ps are the pressure behind the ODW and the pressure behind the induced shock, respectively). When Pd/Ps > 1.3, an abrupt transition occurs, while when Pd/Ps 1.02Φ∗ (Φ∗ is the critical velocity ratio calculated with an empirical formula).

  7. The theory of pattern formation on directed networks.

    Science.gov (United States)

    Asllani, Malbor; Challenger, Joseph D; Pavone, Francesco Saverio; Sacconi, Leonardo; Fanelli, Duccio

    2014-07-31

    Dynamical processes on networks have generated widespread interest in recent years. The theory of pattern formation in reaction-diffusion systems defined on symmetric networks has often been investigated, due to its applications in a wide range of disciplines. Here we extend the theory to the case of directed networks, which are found in a number of different fields, such as neuroscience, computer networks and traffic systems. Owing to the structure of the network Laplacian, the dispersion relation has both real and imaginary parts, at variance with the case for a symmetric, undirected network. The homogeneous fixed point can become unstable due to the topology of the network, resulting in a new class of instabilities, which cannot be induced on undirected graphs. Results from a linear stability analysis allow the instability region to be analytically traced. Numerical simulations show travelling waves, or quasi-stationary patterns, depending on the characteristics of the underlying graph.

  8. Flow-Induced Control of Pattern Formation in Chemical Systems

    Science.gov (United States)

    Berenstein, Igal; Beta, Carsten

    Since Alan Turing's seminal paper in 1952, the study of spatio-temporal patterns that arise in systems of reacting and diffusing components has grown into an immense and vibrant realm of scientific research. This field includes not only chemical systems but spans many areas of science as diverse as cell and developmental biology, ecology, geosciences, or semiconductor physics. For several decades research in this field has concentrated on the vast variety of patterns that can emerge in reaction-diffusion systems and on the underlying instabilities. In the 1990s, stimulated by the pioneering work of Ott, Grebogi and Yorke, control of pattern formation arose as a new topical focus and gradually developed into an entire new field of research. On the one hand, research interests concentrated on control and suppression of undesired dynamical states, in particular on control of chaos. On the other hand, the design and engineering of particular space-time patterns became a major focus in this field that motivates ongoing scientific effort until today...

  9. Geometrical Aspects During Formation of Compact Aggregates of Red Blood Cells

    Directory of Open Access Journals (Sweden)

    Cardoso A.V.

    2002-01-01

    Full Text Available In the past forty years considerable progress has been achieved on the knowledge of human blood as a non-Newtonian shear-thinning suspension, whose initial state, that is at rest (stasis or at very low shear rates, has a gel-like internal structure which is destroyed as shear stress increases. The main goal of this communication is to describe the role of geometrical aspects during RBC (red blood cell aggregate formation, growth and compaction on naturally aggregate (porcine blood and non-aggregate (bovine blood samples. We consider how these aspects coupled with tension equilibrium are decisive to transform red cell linear roleaux to three-dimensional aggregates or clusters. Geometrical aspects are also crucial on the compaction of red blood cell aggregates. These densely packed aggregates could precipitate out of blood- either as dangerous deposits on arterial walls, or as clots which travel in suspension until they block some crucial capillary.

  10. Pattern formation mechanisms in motility mutants of Myxococcus xanthus

    CERN Document Server

    Starruss, Joern; Jakovljevic, Vladimir; Sogaard-Andersen, Lotte; Deutsch, Andreas; Baer, Markus

    2016-01-01

    Formation of spatial patterns of cells is a recurring theme in biology and often depends on regulated cell motility. Motility of M. xanthus depends on two motility machineries: the S-engine and A-engine. Moving M. xanthus cells can organize into spreading colonies or spore-filled fruiting bodies depending on their nutritional status. To understand these two pattern formation processes and the contributions by the two motility machineries, as well as cell reversal, we analyze spatial self-organization in 3 strains: i) a mutant that moves unidirectionally without reversing by the A-motility system only, ii) a unidirectional mutant that is also equipped with the S-motility system, and iii) the wild-type that, in addition to the two motility systems, reverses its direction of movement. The mutant moving by the A-engine illustrates that collective motion in the form of large moving clusters can arise in gliding bacteria due to steric interactions of the rod-shaped cells, without the need of invoking any biochemica...

  11. Auxiliary drying to prevent pattern collapse in high aspect ratio nanostructures

    Energy Technology Data Exchange (ETDEWEB)

    Liu Gang; Zhou Jie; Xiong Ying; Zhang Xiaobo; Tian Yangchao, E-mail: liugang@ustc.edu.cn [National Synchrotron Radiation Laboratory (NSRL), University of Science and Technology of China, Hefei, Anhui 230029 (China)

    2011-07-29

    Many defects are generated in densely packed high aspect ratio structures during nanofabrication. Pattern collapse is one of the serious problems that may arise, mainly due to the capillary force during drying after the rinsing process. In this paper, a method of auxiliary drying is presented to prevent pattern collapse in high aspect ratio nanostructures by adding an auxiliary substrate as a reinforcing rib to restrict deformation and to balance the capillary force. The principle of the method is presented based on the analysis of pattern collapse. A finite element method is then applied to analyze the deformation of the resist beams caused by the surface tension using the ANSYS software, and the effect of the nanostructure's length to width ratio simulated and analyzed. Finally, the possible range of applications based on the proposed method is discussed. Our results show that the aspect ratio may be increased 2.6 times without pattern collapse; furthermore, this method can be widely used in the removal of solvents in micro- and nanofabrication.

  12. Arch-pattern based design and aspect-oriented implementation of Readers-Writers concurrent problem

    Directory of Open Access Journals (Sweden)

    Dumitru Ciorbă

    2007-11-01

    Full Text Available The classical problems of concurrent programming start from the design problems of operating systems in the 80-s. But today there are still proposed new solutions for these problems with the help of various design and programming approaches. The present article describes a solution which was designed according to some new object-oriented principles, based on design patterns and proposes two program solutions: firstly - an object-oriented implementation in Java language, the secondly – an aspect-oriented one in AspectJ language.

  13. Non-linear pattern formation in bone growth and architecture.

    Science.gov (United States)

    Salmon, Phil

    2014-01-01

    The three-dimensional morphology of bone arises through adaptation to its required engineering performance. Genetically and adaptively bone travels along a complex spatiotemporal trajectory to acquire optimal architecture. On a cellular, micro-anatomical scale, what mechanisms coordinate the activity of osteoblasts and osteoclasts to produce complex and efficient bone architectures? One mechanism is examined here - chaotic non-linear pattern formation (NPF) - which underlies in a unifying way natural structures as disparate as trabecular bone, swarms of birds flying, island formation, fluid turbulence, and others. At the heart of NPF is the fact that simple rules operating between interacting elements, and Turing-like interaction between global and local signals, lead to complex and structured patterns. The study of "group intelligence" exhibited by swarming birds or shoaling fish has led to an embodiment of NPF called "particle swarm optimization" (PSO). This theoretical model could be applicable to the behavior of osteoblasts, osteoclasts, and osteocytes, seeing them operating "socially" in response simultaneously to both global and local signals (endocrine, cytokine, mechanical), resulting in their clustered activity at formation and resorption sites. This represents problem-solving by social intelligence, and could potentially add further realism to in silico computer simulation of bone modeling. What insights has NPF provided to bone biology? One example concerns the genetic disorder juvenile Pagets disease or idiopathic hyperphosphatasia, where the anomalous parallel trabecular architecture characteristic of this pathology is consistent with an NPF paradigm by analogy with known experimental NPF systems. Here, coupling or "feedback" between osteoblasts and osteoclasts is the critical element. This NPF paradigm implies a profound link between bone regulation and its architecture: in bone the architecture is the regulation. The former is the emergent

  14. Chemical Pattern Formation in Far-From Systems.

    Science.gov (United States)

    Pearson, John Evan

    The diffusive instability was proposed as a mechanism for pattern formation in chemical systems, in the context of biological morphogenesis, by Alan Turing in 1952. The instability gives rise to a chemical pattern with an intrinsic "chemical wavelength" that is independent of the system size. Since 1952, the diffusive instability, or Turing bifurcation, has been invoked to explain pattern formation in a variety of fields. To date there has been no unambiguous observation of such an instability. Model studies of the instability are usually carried out on systems containing two variables. Such works do not address issues that are of fundamental importance in experimental studies. How does one go about finding Turing bifurcations in systems with many parameters and for which the chemical kinetics are only partially known? What is the chemical wavelength? Turing bifurcations cannot occur in systems with all diffusion coefficients exactly equal. How unequal must the diffusion coefficients be for a system to undergo a Turing bifurcation?. Reacting and diffusing systems obey a partial -differential equation which is a sum of a diffusion term and a reaction term. Dropping the diffusion term results in an ordinary differential equation describing the reaction kinetics in a well-mixed system. In this dissertation it is shown that, for systems with an arbitrary number of variables, Turing bifurcations can occur with diffusion coefficients arbitrarily close to equal, provided the corresponding well-mixed system is sufficiently close to a point of coalescence of Hopf and saddle-node bifurcations. Since the bifurcation set can be obtained directly from experiments, one does not need a detailed microscopic theory of the reaction kinetics. Similarly, the chemical wavelength can be estimated from experimental measurements without knowledge of the reaction kinetics.

  15. Hydrodynamic approach to surface pattern formation by ion beams

    Energy Technology Data Exchange (ETDEWEB)

    Castro, Mario, E-mail: marioc@upcomillas.es [Grupo Interdisciplinar de Sistemas Complejos (GISC) and Grupo de Dinamica No Lineal (DNL), Escuela Tecnica Superior de Ingenieri a - ICAI, Universidad Pontificia Comillas, E-28015 Madrid (Spain); Cuerno, Rodolfo [Departamento de Matematicas and GISC, Universidad Carlos III de Madrid, Avenida de la Universidad 30, E-28911 Leganes (Spain)

    2012-02-15

    On the proper timescale, amorphous solids can flow. Solid flow can be observed macroscopically in glaciers or lead pipes, but it can also be artificially enhanced by creating defects. Ion Beam Sputtering (IBS) is a technique in which ions with energies in the 0.110 keV range impact against a solid target inducing defect creation and dynamics, and eroding its surface leading to formation of ordered nanostructures. Despite its technological interest, a basic understanding of nanopattern formation processes occurring under IBS of amorphizable targets has not been clearly established, recent experiments on Si having largely questioned knowledge accumulated during the last two decades. A number of interfacial equations have been proposed in the past to describe these phenomena, typically by adding together different contributions coming from surface diffusion, ion sputtering or mass redistribution, etc. in a non-systematic way. Here, we exploit the general idea of solids flowing due to ion impacts in order to establish a general framework into which different mechanisms (such as viscous flow, stress, diffusion, or sputtering) can be incorporated, under generic physical conservation laws. As opposed to formulating phenomenological interfacial equations, this approach allows to assess systematically the relevance and interplay of different physical mechanisms influencing surface pattern formation by IBS.

  16. Catalysis on microstructured surfaces: Pattern formation during CO oxidation in complex Pt domains

    Science.gov (United States)

    Graham, M. D.; Bär, M.; Kevrekidis, I. G.; Asakura, K.; Lauterbach, J.; Rotermund, H.-H.; Ertl, G.

    1995-07-01

    The exploration of pattern formation by reaction-diffusion systems in complex bounded domains has begun only recently. While theoretical and numerical information points to a strong interaction between patterns and boundaries, experiments are rare and for heterogeneous catalytic reactions practically nonexistent. By constructing (using microlithography) catalytic surfaces of arbitrary shape and size, we are able to study this interaction for the catalytic oxidation of CO on Pt(110). Experiments along these lines shed light on issues such as anisotropic diffusion and the behavior of individual defects. In addition, certain geometries give rise to patterns that have not been observed on the untreated catalyst and bring to light surface mechanisms that have no analog in homogeneous reaction-diffusion systems. Simple domains of controlled size constitute paradigms that make the comparisons between theory and experiment more fruitful, as we demonstrate through modeling and simulation of such examples. This approach opens the way for systematically probing certain aspects of pattern formation unique to heterogeneous catalysis.

  17. Spontaneous Pattern Formation on Ion Bombarded Si(001)

    Energy Technology Data Exchange (ETDEWEB)

    Chason, Eric; Erlebacher, Jonah, Aziz, Michael J.; Floro, Jerrold A.; Sinclair, Michael B.

    1999-04-26

    Pattern formation on surfaces undergoing low-energy ion bombardment is a common phenomenon. Here, a recently developed in situ spectroscopic light scattering technique was used to monitor periodic ripple evolution on Si(001) during Ar(+) sputtering. Analysis of the rippling kinetics indicated that under high flux sputtering at low temperatures the concentration of mobile species on the surface is saturated, and, surprisingly, is both temperature and ion flux independent. This is due to an effect of ion collision cascades on the concentration of mobile species. This new understanding of surface dynamics during sputtering allowed us to measure straighforwardly the activation energy for atomic migration on the surface to be 1.2+0.1 eV. The technique is generalizable to any material, including high temperature and insulating materials for which surface migration energies are notoriously difficult to measure.

  18. Topology-generating interfacial pattern formation during liquid metal dealloying

    Science.gov (United States)

    Geslin, Pierre-Antoine; McCue, Ian; Gaskey, Bernard; Erlebacher, Jonah; Karma, Alain

    2015-11-01

    Liquid metal dealloying has emerged as a novel technique to produce topologically complex nanoporous and nanocomposite structures with ultra-high interfacial area and other unique properties relevant for diverse material applications. This process is empirically known to require the selective dissolution of one element of a multicomponent solid alloy into a liquid metal to obtain desirable structures. However, how structures form is not known. Here we demonstrate, using mesoscale phase-field modelling and experiments, that nano/microstructural pattern formation during dealloying results from the interplay of (i) interfacial spinodal decomposition, forming compositional domain structures enriched in the immiscible element, and (ii) diffusion-coupled growth of the enriched solid phase and the liquid phase into the alloy. We highlight how those two basic mechanisms interact to yield a rich variety of topologically disconnected and connected structures. Moreover, we deduce scaling laws governing microstructural length scales and dealloying kinetics.

  19. Segment formation in Annelids: patterns, processes and evolution.

    Science.gov (United States)

    Balavoine, Guillaume

    2014-01-01

    The debate on the origin of segmentation is a central question in the study of body plan evolution in metazoans. Annelids are the most conspicuously metameric animals as most of the trunk is formed of identical anatomical units. In this paper, I summarize the various patterns of evolution of the metameric body plan in annelids, showing the remarkable evolvability of this trait, similar to what is also found in arthropods. I then review the different modes of segment formation in the annelid tree, taking into account the various processes taking place in the life histories of these animals, including embryogenesis, post-embryonic development, regeneration and asexual reproduction. As an example of the variations that occur at the cellular and genetic level in annelid segment formation, I discuss the processes of teloblastic growth or posterior addition in key groups in the annelid tree. I propose a comprehensive definition for the teloblasts, stem cells that are responsible for sequential segment addition. There are a diversity of different mechanisms used in annelids to produce segments depending on the species, the developmental time and also the life history processes of the worm. A major goal for the future will be to reconstitute an ancestral process (or several ancestral processes) in the ancestor of the whole clade. This in turn will provide key insights in the current debate on ancestral bilaterian segmentation.

  20. Cleavage pattern and mesentoblast formation in Acanthochiton crinitus (Polyplacophora, Mollusca).

    Science.gov (United States)

    van den Biggelaar, J A

    1996-03-15

    In characteristic spiralian embryos the mesentoblast is the stem cell of the mesodermal bands. It is a derivative of the dorsal quadrant. At least in gastropod molluscs, the ancestral form for the specification of the dorsal quadrant out of four initially equal quadrants is by centralization of one of the four macromeres after the separation of the presumptive ecto- and entoblast cells. Then this macromere is induced by the animal micromeres to produce the mesentoblast. In this paper it is shown that in the embryo of the polyplacophoran Acanthochiton crinitus, specification of the dorsal quadrant and formation of the mesentoblast exactly follow the same pattern. After deletion of the first quartet of micromeres none of the macromeres is centralized, no mesentoblast is formed, and the embryo remains radially symmetrical. Apparently, the mechanism for the specification of the dorsal quadrant and the formation of the mesentoblast has been conserved during the evolution of the main molluscan taxa. It has been discussed whether this mechanism might be a plesiomorphous property, characteristic of less derived spiralian phyla.

  1. Tree island pattern formation in the Florida Everglades

    Science.gov (United States)

    Carr, Joel; D'Odorico, P.; Engel, Victor C.; Redwine, Jed

    2016-01-01

    The Florida Everglades freshwater landscape exhibits a distribution of islands covered by woody vegetation and bordered by marshes and wet prairies. Known as “tree islands”, these ecogeomorphic features can be found in few other low gradient, nutrient limited freshwater wetlands. In the last few decades, however, a large percentage of tree islands have either shrank or disappeared in apparent response to altered water depths and other stressors associated with human impacts on the Everglades. Because the processes determining the formation and spatial organization of tree islands remain poorly understood, it is still unclear what controls the sensitivity of these landscapes to altered conditions. We hypothesize that positive feedbacks between woody plants and soil accretion are crucial to emergence and decline of tree islands. Likewise, positive feedbacks between phosphorus (P) accumulation and trees explain the P enrichment commonly observed in tree island soils. Here, we develop a spatially-explicit model of tree island formation and evolution, which accounts for these positive feedbacks (facilitation) as well as for long range competition and fire dynamics. It is found that tree island patterns form within a range of parameter values consistent with field data. Simulated impacts of reduced water levels, increased intensity of drought, and increased frequency of dry season/soil consuming fires on these feedback mechanisms result in the decline and disappearance of tree islands on the landscape.

  2. Ternary eutectic dendrites: Pattern formation and scaling properties

    Science.gov (United States)

    Rátkai, László; Szállás, Attila; Pusztai, Tamás; Mohri, Tetsuo; Gránásy, László

    2015-04-01

    Extending previous work [Pusztai et al., Phys. Rev. E 87, 032401 (2013)], we have studied the formation of eutectic dendrites in a model ternary system within the framework of the phase-field theory. We have mapped out the domain in which two-phase dendritic structures grow. With increasing pulling velocity, the following sequence of growth morphologies is observed: flat front lamellae → eutectic colonies → eutectic dendrites → dendrites with target pattern → partitionless dendrites → partitionless flat front. We confirm that the two-phase and one-phase dendrites have similar forms and display a similar scaling of the dendrite tip radius with the interface free energy. It is also found that the possible eutectic patterns include the target pattern, and single- and multiarm spirals, of which the thermal fluctuations choose. The most probable number of spiral arms increases with increasing tip radius and with decreasing kinetic anisotropy. Our numerical simulations confirm that in agreement with the assumptions of a recent analysis of two-phase dendrites [Akamatsu et al., Phys. Rev. Lett. 112, 105502 (2014)], the Jackson-Hunt scaling of the eutectic wavelength with pulling velocity is obeyed in the parameter domain explored, and that the natural eutectic wavelength is proportional to the tip radius of the two-phase dendrites. Finally, we find that it is very difficult/virtually impossible to form spiraling two-phase dendrites without anisotropy, an observation that seems to contradict the expectations of Akamatsu et al. Yet, it cannot be excluded that in isotropic systems, two-phase dendrites are rare events difficult to observe in simulations.

  3. Gender aspects of formation of value potential of students’ physical training

    Directory of Open Access Journals (Sweden)

    Marchenko O. Iu.

    2014-11-01

    Full Text Available Purpose: study of gender peculiarities of formation of valuable orientations of students in physical education and sport. Material: in research students of 3 - 11 classes of secondary schools (419, with which the survey was conducted, were involved. Results : the absence of students' understanding of the necessity of motor activity to human health. Also development of adolescents values of physical culture and sports. Showing psychosocial characteristics to form a stable interest in the physical self. It was found that 15% of girls wish to play hockey on grass, athletic gymnastics, football and boxing. Conclusions: for the formation of valuable orientations of physical culture among students it is necessary to consider not only the physiological, morphological and psychological aspects, but also gender peculiarities of personality.

  4. Morphological and quantitative aspects of nodule formation in hemolymph of the blowfly Chrysomya megacephala (Fabricius, 1794).

    Science.gov (United States)

    Faraldo, A C; Gregório, E A; Lello, E

    2008-03-01

    Insects manifest effective immune responses that include both cellular and humoral components. Morphological and quantitative aspects of cellular and humoral cooperation during nodule formation in Chrysomya megacephala hemolymph against Saccharomyces cerevisae yeast cells were demonstrated for the first time. The analyses were performed in non-injected larvae (NIL), saline-injected larvae (SIL) and yeast-injected larvae (YIL). The hemolymph of injected groups was collected 0.5, 1, 2, 4, 12, 24, 36, or 48-h post-injection. Morphological aspects of YIL nodulation were investigated using transmission electron microscopy (TEM). Quantitative analyses consisted of total (THC) and differential hemocyte counts (DHC) in all the groups and total yeast count (TYC) in YIL, which were performed in an improved Neubauer chamber. Nodule formation was initiated at approximately 2-h post-injection. Twelve hours after the injection, TEM revealed the presence of an amorphous membrane, at the same time that circulating hemocyte number decreased significantly contrasting the increase of yeast number. Our results showed the ability of C. megacephala hemolymph to perform humoral encapsulation when hemocyte population is insufficient to eliminate the microorganisms, warranting consideration in future investigations on the relative roles played by cellular and humoral elements of innate immunity of this calliphorid.

  5. Reptile scale paradigm: Evo-Devo, pattern formation and regeneration

    Science.gov (United States)

    Chang, Cheng; Wu, Ping; Baker, Ruth E.; Maini, Philip K.; Alibardi, Lorenzo; Chuong, Cheng-Ming

    2010-01-01

    The purpose of this perspective is to highlight the merit of the reptile integument as an experimental model. Reptiles represent the first amniotes. From stem reptiles, extant reptiles, birds and mammals have evolved. Mammal hairs and feathers evolved from Therapsid and Sauropsid reptiles, respectively. The early reptilian integument had to adapt to the challenges of terrestrial life, developing a multi-layered stratum corneum capable of barrier function and ultraviolet protection. For better mechanical protection, diverse reptilian scale types have evolved. The evolution of endothermy has driven the convergent evolution of hair and feather follicles: both form multiple localized growth units with stem cells and transient amplifying cells protected in the proximal follicle. This topological arrangement allows them to elongate, molt and regenerate without structural constraints. Another unique feature of reptile skin is the exquisite arrangement of scales and pigment patterns, making them testable models for mechanisms of pattern formation. Since they face the constant threat of damage on land, different strategies were developed to accommodate skin homeostasis and regeneration. Temporally, they can be under continuous renewal or sloughing cycles. Spatially, they can be diffuse or form discrete localized growth units (follicles). To understand how gene regulatory networks evolved to produce increasingly complex ectodermal organs, we have to study how prototypic scale-forming pathways in reptiles are modulated to produce appendage novelties. Despite the fact that there are numerous studies of reptile scales, molecular analyses have lagged behind. Here, we underscore how further development of this novel experimental model will be valuable in filling the gaps of our understanding of the Evo-Devo of amniote integuments. PMID:19557687

  6. Pattern dynamics of the Benard-Marangoni instability in a medium aspect ratio container

    Energy Technology Data Exchange (ETDEWEB)

    Cerisier, P [IUSTI - CNRS UMR 6595, Polytech' Marseille, Technopole de Chateau-Gombert, 5 rue Enrico Fermi, 13453, Marseille Cedex 13 (France); Rahal, S [Department of Mechanical Engineering, University of Batna, Rue Boukhlouf Mohamed el Hadi, 05000 Batna (Algeria); Azuma, H [Department of Aerospace Engineering, Osaka Prefecture University, Gakuen-cho 1-1, Sakai, Osaka 599-8531 (Japan)

    2007-04-15

    This study is an experimental work devoted to Benard-Marangoni instability in a medium vessel. The free surface deformation is visualised by interferometry and the free surface temperature field by infrared thermography. These two techniques are complementary, since each method provides specific information, which may allow the detection of peculiar phenomena such as the spatial resonance, which is a situation in which the interfacial deformation does not conform to the flow pattern. The influences of the aspect ratio, Rayleigh, Biot and Prandtl numbers, are considered. More dynamics are induced by increasing the Biot number. Conversely, increasing the Prandtl number reduces the dynamics. The deformation magnitude and the wavenumber increase as functions of the gradient of temperature. Two behaviours of the deformation, as a function of Prandtl and Biot numbers, were observed, depending on the value of the applied gradient of temperature. The obtained results are discussed with previous experimental, theoretical and numerical studies. Results of other authors were confirmed concerning the evolution as functions of the gradient of temperature and the aspect ratio and new results were obtained concerning the behaviour of the pattern as functions of Pr and Biot numbers.

  7. Psychosocial aspects of Costa Rican adolescents' eating and physical activity patterns.

    Science.gov (United States)

    Monge-Rojas, Rafael; Nuñez, Hilda P; Garita, Carlos; Chen-Mok, Mario

    2002-08-01

    To determine the importance of some psychosocial aspects on the eating and physical activity patterns of Costa Rican adolescents. A total of 1200 adolescents were included in the study. Data were collected using a self-administered instrument containing the following elements: questions to elicit demographic information and five sections with several items (stated as positive or negative behaviors) to study the influence of peers, parents, social environment, body image, and self-efficacy on five target behaviors, intake of foods rich in saturated fats, calcium, and iron, along with consumption of fruits and vegetables and physical activity practices. Data were analyzed using a factor analysis with main component extraction and varimax rotation, along with multiple regression analyses. Social environment and peer influence were the major factors that predict behaviors associated with the intake of foods rich in saturated fat. Meanwhile, parental and social environment influences were the main factors in explaining the fruit and vegetable intake-related behaviors. Self-efficacy was a significant predictor of behaviors associated with physical activity. Body image influence was an important variable associated with all the behaviors analyzed. Multiple regression analyses suggest that the fathers' educational level, the adolescents' age, being female, and living in a rural area may have positive influence on the behaviors studied; however, the overall R(2) for all regression models was quite small (<.03). Most of the variability in adolescents' food intake and physical activity-related behaviors remained unexplained by the demographic variables included in the study. Nevertheless, the results suggest that promotion of health programs built on the influence of social environment, peers and family members, and self-efficacy may have a positive impact on the adolescents' food and physical activity patterns. However, the clear definition of which psychosocial aspect(s

  8. Blastocyst elongation, trophoblastic differentiation, and embryonic pattern formation.

    Science.gov (United States)

    Blomberg, Leann; Hashizume, Kazuyoshi; Viebahn, Christoph

    2008-02-01

    The molecular basis of ungulate and non-rodent conceptus elongation and gastrulation remains poorly understood; however, use of state-of-the-art genomic technologies is beginning to elucidate the mechanisms regulating these complicated processes. For instance, transcriptome analysis of elongating porcine concepti indicates that protein synthesis and trafficking, cell growth and proliferation, and cellular morphology are major regulated processes. Furthermore, potential autocrine roles of estrogen and interleukin-1-beta in regulating porcine conceptus growth and remodeling and metabolism have become evident. The importance of estrogen in pig is emphasized by the altered expression of essential steroidogenic and trophoblast factors in lagging ovoid concepti. In ruminants, the characteristic mononucleate trophoblast cells differentiate into a second lineage important for implantation, the binucleate trophoblast, and transcriptome profiling of bovine concepti has revealed a gene cluster associated with rapid trophoblast proliferation and differentiation. Gene cluster analysis has also provided evidence of correlated spatiotemporal expression and emphasized the significance of the bovine trophoblast cell lineage and the regulatory mechanism of trophoblast function. As a part of the gastrulation process in the mammalian conceptus, specification of the germ layers and hence definitive body axes occur in advance of primitive streak formation. Processing of the transforming growth factor-beta-signaling molecules nodal and BMP4 by specific proteases is emerging as a decisive step in the initial patterning of the pre-gastrulation embryo. The topography of expression of these and other secreted molecules with reference to embryonic and extraembryonic tissues determines their local interaction potential. Their ensuing signaling leads to the specification of axial epiblast and hypoblast compartments through cellular migration and differentiation and, in particular, the

  9. Instabilities and pattern formation on the pore scale

    Science.gov (United States)

    Juel, Anne

    What links a baby's first breath to adhesive debonding, enhanced oil recovery, or even drop-on-demand devices? All these processes involve moving or expanding bubbles displacing fluid in a confined space, bounded by either rigid or elastic walls. In this talk, we show how spatial confinement may either induce or suppress interfacial instabilities and pattern formation in such flows. We demonstrate that a simple change in the bounding geometry can radically alter the behaviour of a fluid-displacing air finger both in rigid and elastic vessels. A rich array of propagation modes, including steady and oscillatory fingers, is uncovered when air displaces oil from axially uniform tubes that have local variations in flow resistance within their cross-sections. Moreover, we show that the experimentally observed states can all be captured by a two-dimensional depth-averaged model for bubble propagation through wide channels. Viscous fingering in Hele-Shaw cells is a classical and widely studied fluid-mechanical instability: when air is injected into the narrow, liquid-filled gap between parallel rigid plates, the axisymmetrically expanding air-liquid interface tends to be unstable to non-axisymmetric disturbances. We show how the introduction of wall elasticity (via the replacement of the upper bounding plate by an elastic membrane) can weaken or even suppress the fingering instability by allowing changes in cell confinement through the flow-induced deflection of the boundary. The presence of a deformable boundary also makes the system prone to additional solid-mechanical instabilities, and these wrinkling instabilities can in turn enhance viscous fingering. The financial support of EPSRC and the Leverhulme Trust is gratefully acknowledged.

  10. Looking at the origin of phenotypic variation from pattern formation ...

    Indian Academy of Sciences (India)

    Prakash

    developmental mechanism acts, the environment, epigenetic factors originating from regions of the embryo outside the pattern under transformation, genetic variation affecting the intensity by which genes in the network interact (for example how strongly a gene product inhibits or activates another one). The range of pattern ...

  11. Modeling of metal nanocluster growth on patterned substrates and surface pattern formation under ion bombardment

    Energy Technology Data Exchange (ETDEWEB)

    Numazawa, Satoshi

    2012-11-01

    This work addresses the metal nanocluster growth process on prepatterned substrates, the development of atomistic simulation method with respect to an acceleration of the atomistic transition states, and the continuum model of the ion-beam inducing semiconductor surface pattern formation mechanism. Experimentally, highly ordered Ag nanocluster structures have been grown on pre-patterned amorphous SiO{sub 2} surfaces by oblique angle physical vapor deposition at room temperature. Despite the small undulation of the rippled surface, the stripe-like Ag nanoclusters are very pronounced, reproducible and well-separated. The first topic is the investigation of this growth process with a continuum theoretical approach to the surface gas condensation as well as an atomistic cluster growth model. The atomistic simulation model is a lattice-based kinetic Monte-Carlo (KMC) method using a combination of a simplified inter-atomic potential and experimental transition barriers taken from the literature. An effective transition event classification method is introduced which allows a boost factor of several thousand compared to a traditional KMC approach, thus allowing experimental time scales to be modeled. The simulation predicts a low sticking probability for the arriving atoms, millisecond order lifetimes for single Ag monomers and {approx}1 nm square surface migration ranges of Ag monomers. The simulations give excellent reproduction of the experimentally observed nanocluster growth patterns. The second topic specifies the acceleration scheme utilized in the metallic cluster growth model. Concerning the atomistic movements, a classical harmonic transition state theory is considered and applied in discrete lattice cells with hierarchical transition levels. The model results in an effective reduction of KMC simulation steps by utilizing a classification scheme of transition levels for thermally activated atomistic diffusion processes. Thermally activated atomistic movements

  12. METHODOLOGICAL ASPECTS OF RATIONAL DESIGN FORMATION OF INFRASTRUCTURE OF AGRARIAN SECTOR OF UKRAINE

    Directory of Open Access Journals (Sweden)

    Ivan Korchynskyy

    2016-11-01

    Full Text Available Methodological aspects of formation of rational design of infrastructure of agrarian sector of Ukraine on the basis of the institutional approach and laws of architectonics are examined. It is shown that the agrarian sector of Ukraine is a complex socio-economic system, the formation and development of which is in the process of market transformation what is caused by institutional influences. In general the process of relations institutionalization imply their formalization and standardization, in other case the subject of public life could not predict the actions of other entities associated with him and ensure their cooperation. One of the specific characteristic of human society is formed institutional system that regulates behaviour. In the article the factors of influence on the conduct of being in charge subjects are considered in the conditions of development of market economy. The special attention is spared the institutional factors of the economy growing. Methodology. The meaning of “agricultural field” and “infrastructure” and their mutual consistency is classified. As the scientific method, the institutional approach of principles of architectonics has been used, which allowed to justify the creation of a rational approach to the design of infrastructure in agrarian sector as a whole on the basis, relation and interdependence of its elements, based on the fundamental laws of architectonics (law of equilibrium, law of the golden mean structuring. The article demonstrates a necessary of the choice of a theory of institutionalism as the main methodological basis for the study of the process of innovation development of economic system of Ukraine. It is determined that the inefficient activities of institutions in Ukraine are the main cause of the low level of innovation, which has a negative impact on the development of the economy as a whole. Results. Research points on new aspects of infrastructure as a part of the entire

  13. Effects of growth and mutation on pattern formation in tissues.

    Directory of Open Access Journals (Sweden)

    Benedicte Mengel Pers

    Full Text Available In many developing tissues, neighboring cells enter different developmental pathways, resulting in a fine-grained pattern of different cell states. The most common mechanism that generates such patterns is lateral inhibition, for example through Delta-Notch coupling. In this work, we simulate growth of tissues consisting of a hexagonal arrangement of cells laterally inhibiting their neighbors. We find that tissue growth by cell division and cell migration tends to produce ordered patterns, whereas lateral growth leads to disordered, patchy patterns. Ordered patterns are very robust to mutations (gene silencing or activation in single cells. In contrast, mutation in a cell of a disordered tissue can produce a larger and more widespread perturbation of the pattern. In tissues where ordered and disordered patches coexist, the perturbations spread mostly at boundaries between patches. If cell division occurs on time scales faster than the degradation time, disordered patches will appear. Our work suggests that careful experimental characterization of the disorder in tissues could pinpoint where and how the tissue is susceptible to large-scale damage even from single cell mutations.

  14. Beyond Turing: mechanochemical pattern formation in biological tissues.

    Science.gov (United States)

    Mercker, Moritz; Brinkmann, Felix; Marciniak-Czochra, Anna; Richter, Thomas

    2016-05-04

    During embryogenesis, chemical (morphogen) and mechanical patterns develop within tissues in a self-organized way. More than 60 years ago, Turing proposed his famous reaction-diffusion model for such processes, assuming chemical interactions as the main driving force in tissue patterning. However, experimental identification of corresponding molecular candidates is still incomplete. Recent results suggest that beside morphogens, also tissue mechanics play a significant role in these patterning processes. Combining continuous finite strain with discrete cellular tissue models, we present and numerically investigate mechanochemical processes, in which morphogen dynamics and tissue mechanics are coupled by feedback loops. We consider three different mechanical cues involved in such feedbacks: strain, stress, and compression. Based on experimental results, for each case, we present a feedback loop spontaneously creating robust mechanochemical patterns. In contrast to Turing-type models, simple mechanochemical interaction terms are sufficient to create de novo patterns. Our results emphasize mechanochemical processes as possible candidates controlling different steps of embryogenesis. To motivate further experimental research discovering related mechanisms in living tissues, we also present predictive in silicio experiments. Reviewer 1 - Marek Kimmel; Reviewer 2 - Konstantin Doubrovinski (nominated by Ned Wingreen); Reviewer 3 - Jun Allard (nominated by William Hlavacek).

  15. Viscoelasticity and pattern formations in stock market indices

    Science.gov (United States)

    Gündüz, Güngör; Gündüz, Aydın

    2017-06-01

    The viscoelastic and thermodynamic properties of four stock indices, namely, DJI, Nasdaq-100, Nasdaq-Composite, and S&P were analyzed for a period of 30 years from 1986 to 2015. The asset values (or index) can be placed into Aristotelian `potentiality-actuality' framework by using scattering diagram. Thus, the index values can be transformed into vectorial forms in a scattering diagram, and each vector can be split into its horizontal and vertical components. According to viscoelastic theory, the horizontal component represents the conservative, and the vertical component represents the dissipative behavior. The related storage and the loss modulus of these components are determined and then work-like and heat-like terms are calculated. It is found that the change of storage and loss modulus with Wiener noise (W) exhibit interesting patterns. The loss modulus shows a featherlike pattern, whereas the storage modulus shows figurative man-like pattern. These patterns are formed due to branchings in the system and imply that stock indices do have a kind of `fine-order' which can be detected when the change of modulus values are plotted with respect to Wiener noise. In theoretical calculations it is shown that the tips of the featherlike patterns stay at negative W values, but get closer to W = 0 as the drift in the system increases. The shift of the tip point from W = 0 indicates that the price change involves higher number of positive Wiener number corrections than the negative Wiener. The work-like and heat-like terms also exhibit patterns but with different appearance than modulus patterns. The decisional changes of people are reflected as the arrows in the scattering diagram and the propagation path of these vectors resemble the path of crack propagation. The distribution of the angle between two subsequent vectors shows a peak at 90°, indicating that the path mostly obeys the crack path occurring in hard objects. Entropy mimics the Wiener noise in the evolution

  16. Nanoparticles dynamics on a surface: fractal pattern formation and fragmentation

    DEFF Research Database (Denmark)

    Dick, Veronika V.; Solov'yov, Ilia; Solov'yov, Andrey V.

    2010-01-01

    In this paper we review our recent results on the formation and the post-growth relaxation processes of nanofractals on surface. For this study we developed a method which describes the internal dynamics of particles in a fractal and accounts for their diffusion and detachment. We demonstrate tha...

  17. Spontaneous tunable Turing pattern formation for coherent high-power THz radiation

    CERN Document Server

    Huang, Shu-Wei; Yang, Shang-Hua; Yu, Mingbin; Kwong, Dim-Lee; Zelevinsky, T; Jarrahi, Mona; Wong, Chee Wei

    2016-01-01

    The spontaneous breaking of symmetry and homogeneity through dissipative pattern formation is a fundamental question in developmental biology, molecular biochemistry, mathematics and nonlinear physics. Self-organized patterns arise in nature, such as pigmentation in animals, tree branching fractals, Prigogine non-equilibrium chemical bifurcations, and are postulated by Turing to occur from diffusion-reaction driven instabilities. In spite of the spontaneous nature, these threshold-dependent patterns - when formed - can potentially be remarkably robust in the presence of noise. Here we report the spontaneous Turing pattern formation in chip-scale nonlinear oscillators, developing a precision frequency comb in the solid-state. The stationary Turing pattern is discretely tunable across 430 GHz on a THz carrier, with a sideband non-uniformity measured down to 1 part in 1.5x10^15. Local mode hybridizations in the nonlinear ring oscillator seeds the coherent pattern formation and phase matching, to obtain a record ...

  18. THEORETICAL ASPECTS OF FORMATION OF SOCIO-PROFESSIONAL SELF-DETERMINATION OF LEARNERS AT EDUCATION ESTABLISHMENTS

    Directory of Open Access Journals (Sweden)

    Alla Ya. Zhurkina

    2016-03-01

    Full Text Available Introduction: the article reveals the theoretical aspects in formation of socio-professional self-determination of learners in education institutions. The emphasis is on interdisciplinary links, integration approaches in the study of problems of self-determination. Materials and Methods: the article was written using a number of methods of theoretical pedagogical study, allowing mental penetration into the essence of the phenomenon under study teacher: analysis, synthesis, comparison, generalization method of investigating causal relationships. Results: the authors reveal the essence of the socio-professional self-determination and present grounds for separation of this concept out from the pyramid of the terms that characterise the description of the career choice process. The article substantiates the social orientation of the act of choosing a profession. It argues that career choice affects the future social position. Knowledge of theoretical bases of process of socioprofessional self-determination is very important for preparation of children for conscious career choices. Special attention is paid to the regularities, principles and f actors of this process. Discussion and Conclusions: giving a thorough account of internal and external factors of socio-professional self-determination, the authors propose to consider them solely in the system, with its inherent dynamics and the inextricable connection with the environment, suggest that changes in the social environment always entail changes in the system of factors. The article is concerned with the problem of contradictions of the process of formation of socio-professional self-determination. The authors highlight the leading role of pedagogical support in the process of socio-professional self-determination of a student’s personality, analyse modern approaches to the concept of pedagogical support. The authors characterize the educational support system as a professional educator focused

  19. Versatile pattern generation of periodic, high aspect ratio Si nanostructure arrays with sub-50-nm resolution on a wafer scale.

    Science.gov (United States)

    Ho, Jian-Wei; Wee, Qixun; Dumond, Jarrett; Tay, Andrew; Chua, Soo-Jin

    2013-12-01

    We report on a method of fabricating variable patterns of periodic, high aspect ratio silicon nanostructures with sub-50-nm resolution on a wafer scale. The approach marries step-and-repeat nanoimprint lithography (NIL) and metal-catalyzed electroless etching (MCEE), enabling near perfectly ordered Si nanostructure arrays of user-defined patterns to be controllably and rapidly generated on a wafer scale. Periodic features possessing circular, hexagonal, and rectangular cross-sections with lateral dimensions down to sub-50 nm, in hexagonal or square array configurations and high array packing densities up to 5.13 × 107 structures/mm2 not achievable by conventional UV photolithography are fabricated using this top-down approach. By suitably tuning the duration of catalytic etching, variable aspect ratio Si nanostructures can be formed. As the etched Si pattern depends largely on the NIL mould which is patterned by electron beam lithography (EBL), the technique can be used to form patterns not possible with self-assembly methods, nanosphere, and interference lithography for replication on a wafer scale. Good chemical resistance of the nanoimprinted mask and adhesion to the Si substrate facilitate good pattern transfer and preserve the smooth top surface morphology of the Si nanostructures as shown in TEM. This approach is suitable for generating Si nanostructures of controlled dimensions and patterns, with high aspect ratio on a wafer level suitable for semiconductor device production.

  20. Pattern and clinical aspects of congenital heart diseases and their management in Cameroon.

    Science.gov (United States)

    Tantchou Tchoumi, J C; Ambassa, J C; Chelo, D; Djimegne, F Kamdem; Giamberti, A; Cirri, S; Kingue, S; Butera, G

    2011-02-01

    The aim of the study was to investigate the occurrence, pattern and clinical aspects of congenital heart diseases and their management in Cameroon. In this multicentred retrospective study from January 2006 till November 2009, out of 51,636 consulting in three referral centres, 505 were recruited. All the patients presented with the following symptoms: cyanosis, clubbing, frequent respiratory tract infections, failure to thrive, growth retardation, precordial murmur and dyspnoea. Patients were sent for the screening of congenital heart disease. After the comprehensive Doppler echocardiography, the recruited patients were diagnosed with congenital (67.2%) and in few, acquired heart disease. Heart murmur, dyspnoea and growth retardation was the triad mostly encountered. The occurrence of congenital heart diseases in Cameroon is 9.87%. In Douala, isolated ventricular septal defect, interatrial septal defect and isolated pulmonary valve stenosis were more diagnosed than in Shisong (P abroad; 9% in the cardiac centre. Our data show that congenital heart diseases are represented in Cameroon as in the literature; isolated ventricular septal defect is the predominant pathology.

  1. Direct numerical simulation of pattern formation in subaqueous sediment

    CERN Document Server

    Kidanemariam, Aman G

    2014-01-01

    We present results of direct numerical simulation of incompressible fluid flow over a thick bed of mobile, spherically-shaped particles. The algorithm is based upon the immersed boundary technique for fluid-solid coupling and uses a soft-sphere model for the solid-solid contact. Two parameter points in the laminar flow regime are chosen, leading to the emergence of sediment patterns classified as `small dunes', while one case under turbulent flow conditions leads to `vortex dunes' with significant flow separation on the lee side. Wavelength, amplitude and propagation speed of the patterns extracted from the spanwise-averaged fluid-bed interface are found to be consistent with available experimental data. The particle transport rates are well represented by available empirical models for flow over a plane sediment bed in both the laminar and the turbulent regimes.

  2. Pattern Formation in Predator-Prey Model with Delay and Cross Diffusion

    Directory of Open Access Journals (Sweden)

    Xinze Lian

    2013-01-01

    Full Text Available We consider the effect of time delay and cross diffusion on the dynamics of a modified Leslie-Gower predator-prey model incorporating a prey refuge. Based on the stability analysis, we demonstrate that delayed feedback may generate Hopf and Turing instability under some conditions, resulting in spatial patterns. One of the most interesting findings is that the model exhibits complex pattern replication: the model dynamics exhibits a delay and diffusion controlled formation growth not only to spots, stripes, and holes, but also to spiral pattern self-replication. The results indicate that time delay and cross diffusion play important roles in pattern formation.

  3. Signal Processing, Pattern Formation and Adaptation in Neural Oscillators

    Science.gov (United States)

    2016-11-29

    be. Humans recognize complex acoustic patterns under challenging listening conditions, such as a voice in a crowded room or on a city street. We...double limit cycle regime. Filled circles indicate stable fixed points (attractors) and empty circles unstable fixed points (repellers). Arrows...plotted over time for a trajectory in panel C (phase locking). Filled circles in panels B and C indicate stable fixed points. DISTRIBUTION A

  4. High order numerical methods for myxobacteria pattern formation

    OpenAIRE

    Glavan, Ana Maria

    2015-01-01

    Rippling patterns of myxobacteria appear in starving colonies before they aggregate to form fruiting bodies. These periodic traveling cell density waves arise from the coordination of individual cell reversals, resulting from an internal clock regulating them, and from contact signaling during bacterial collisions. Our main interest in this research is the numerical approximation with high order accuracy in space of the solutions of mathematical models proposed for myxobacteria rippling. We r...

  5. Multiscale Random-Walk Algorithm for Simulating Interfacial Pattern Formation

    Energy Technology Data Exchange (ETDEWEB)

    Plapp, Mathis; Karma, Alain

    2000-02-21

    We present a novel computational method to simulate accurately a wide range of interfacial patterns whose growth is limited by a large-scale diffusion field. To illustrate the computational power of this method, we demonstrate that it can be used to simulate three-dimensional dendritic growth in a previously unreachable range of low undercoolings that is of direct experimental relevance. (c) 2000 The American Physical Society.

  6. Dynamic array generation and pattern formation for optical tweezers

    DEFF Research Database (Denmark)

    Mogensen, P.C.; Glückstad, J.

    2000-01-01

    The generalised phase contrast approach is used for the generation of optical arrays of arbitrary beam shape, suitable for applications in optical tweezers for the manipulation of biological specimens. This approach offers numerous advantages over current techniques involving the use of computer-......-generated holograms or diffractive optical elements. We demonstrate a low-loss system for generating intensity patterns suitable for the trapping and manipulation of small particles or specimens....

  7. Longitudinal relations between personality traits and aspects of identity formation during adolescence.

    Science.gov (United States)

    Hill, Patrick L; Allemand, Mathias; Grob, Sabine Zehnder; Peng, Aristide; Morgenthaler, Christoph; Käppler, Christoph

    2013-04-01

    The current study focused on three aspects of identity development relevant to the adolescent years: being an authentic person, perceiving control over and consistency in one's environment, and having consistent expectations from close others. In a two-wave study of adolescents (n = 750), we examined how these aspects change over the course of a year, as well as whether these aspects correspond to the Big Five personality traits. Results indicated three important findings. First, all three aspects evidenced the capacity for change over a year, and appeared more malleable than personality traits. Second, youth higher on all aspects reported a more adaptive personality profile. Third, changes on these aspects coincide with those on personality traits over the year. Findings are discussed with respect to future directions for studying the interplay of identity and personality development. Copyright © 2013 The Foundation for Professionals in Services for Adolescents. Published by Elsevier Ltd. All rights reserved.

  8. Determination of density pattern of fracture in Asmari Formation in Marun oilfield

    National Research Council Canada - National Science Library

    Kheyrollah Noraeinezhad; Hassan Amiri Bakhtiar; Heidar Basiri; Mehdi Khoshnodkia

    2015-01-01

    .... Given the important role of fracture characteristics for improving production, so the aim of this research is to investigate the density pattern of fracture in Asmari formation in Marun oilfield...

  9. Automated numerical simulation of biological pattern formation based on visual feedback simulation framework

    Science.gov (United States)

    Sun, Mingzhu; Xu, Hui; Zeng, Xingjuan; Zhao, Xin

    2017-01-01

    There are various fantastic biological phenomena in biological pattern formation. Mathematical modeling using reaction-diffusion partial differential equation systems is employed to study the mechanism of pattern formation. However, model parameter selection is both difficult and time consuming. In this paper, a visual feedback simulation framework is proposed to calculate the parameters of a mathematical model automatically based on the basic principle of feedback control. In the simulation framework, the simulation results are visualized, and the image features are extracted as the system feedback. Then, the unknown model parameters are obtained by comparing the image features of the simulation image and the target biological pattern. Considering two typical applications, the visual feedback simulation framework is applied to fulfill pattern formation simulations for vascular mesenchymal cells and lung development. In the simulation framework, the spot, stripe, labyrinthine patterns of vascular mesenchymal cells, the normal branching pattern and the branching pattern lacking side branching for lung branching are obtained in a finite number of iterations. The simulation results indicate that it is easy to achieve the simulation targets, especially when the simulation patterns are sensitive to the model parameters. Moreover, this simulation framework can expand to other types of biological pattern formation. PMID:28225811

  10. Pattern Formation and Growth Kinetics in Eutectic Systems

    Energy Technology Data Exchange (ETDEWEB)

    Teng, Jing [Iowa State Univ., Ames, IA (United States)

    2007-01-01

    Growth patterns during liquid/solid phase transformation are governed by simultaneous effects of heat and mass transfer mechanisms, creation of new interfaces, jump of the crystallization units from liquid to solid and their rearrangement in the solid matrix. To examine how the above processes influence the scale of microstructure, two eutectic systems are chosen for the study: a polymeric system polyethylene glycol-p-dibromobenzene (PEG-DBBZ) and a simple molecular system succinonitrile (SCN)-camphor. The scaling law for SCN-camphor system is found to follow the classical Jackson-Hunt model of circular rod eutectic, where the diffusion in the liquid and the interface energy are the main physics governing the two-phase pattern. In contrast, a significantly different scaling law is observed for the polymer system. The interface kinetics of PEG phase and its solute concentration dependence thus have been critically investigated for the first time by directional solidification technique. A model is then proposed that shows that the two-phase pattern in polymers is governed by the interface diffusion and the interface kinetics. In SCN-camphor system, a new branch of eutectic, elliptical shape rodl, is found in thin samples where only one layer of camphor rods is present. It is found that the orientation of the ellipse can change from the major axis in the direction of the thickness to the direction of the width as the velocity and/or the sample thickness is decreased. A theoretical model is developed that predicts the spacing and orientation of the elliptical rods in a thin sample. The single phase growth patterns of SCN-camphor system were also examined with emphasis on the three-dimensional single cell and cell/dendrite transition. For the 3D single cell in a capillary tube, the entire cell shape ahead of the eutectic front can be described by the Saffmann-Taylor finger only at extremely low growth rate. A 3D directional solidification model is developed to

  11. Theoretical and methodological aspects of the formation of economic sustainability of agricultural enterprises

    OpenAIRE

    Dyachenko, V.

    2014-01-01

    The features of the economic sustainability of agricultural enterprises have been determined. The factors of its formation have been identified. Algorithm research of economic stability and recommendations for its formation have been suggested.

  12. Pattern formation in snow during temperature gradient metamorphism

    Science.gov (United States)

    Pinzer, B.; Schneebeli, M.

    2008-12-01

    Temperature gradient metamorphism causes sublimation and growth of crystals. This process causes a dramatic change in thermal and geometrical properties. Using a time-series of snow evolution, we simulated the evolution of the thermal conductivity parallel and perpendicular to the temperature gradient direction. Thermal conductivity changed within a few days from an isotropic property to a strongly anisotropic property. Surprisingly, these changes are only marginally reflected in the geometrical anisotropy of the full snow microstructure. We also observed that the heat flux in the microstructure is concentrated in a small part of the ice matrix, which causes a high tortuosity. The percentage of the ice matrix involved in high heat fluxes was almost constant over time. However, the connectivity of these heat-conducting ice structures increased. The formation of an anisotropic temperature conductivity could have important consequences in terrain where temperature gradients are not perpendicular to the surface, as in shallow snowpacks over hummocky terrain or in boulder areas, or where the snowpack has a strong surface topography, e.g. due to sastrugi formation.

  13. Longitudinal Relations between Personality Traits and Aspects of Identity Formation during Adolescence

    Science.gov (United States)

    Hill, Patrick L.; Allemand, Mathias; Grob, Sabine Zehnder; Peng, Aristide; Morgenthaler, Christoph; Kappler, Christoph

    2013-01-01

    The current study focused on three aspects of identity development relevant to the adolescent years: being an authentic person, perceiving control over and consistency in one's environment, and having consistent expectations from close others. In a two-wave study of adolescents (n = 750), we examined how these aspects change over the course of a…

  14. Physical-chemical mechanisms of pattern formation during gastrulation

    Science.gov (United States)

    Bozorgui, Behnaz; Kolomeisky, Anatoly B.; Teimouri, Hamid

    2018-03-01

    Gastrulation is a fundamental phase during the biological development of most animals when a single layer of identical embryo cells is transformed into a three-layer structure, from which the organs start to develop. Despite a remarkable progress in quantifying the gastrulation processes, molecular mechanisms of these processes remain not well understood. Here we theoretically investigate early spatial patterning in a geometrically confined colony of embryonic stem cells. Using a reaction-diffusion model, a role of Bone-Morphogenetic Protein 4 (BMP4) signaling pathway in gastrulation is specifically analyzed. Our results show that for slow diffusion rates of BMP4 molecules, a new length scale appears, which is independent of the size of the system. This length scale separates the central region of the colony with uniform low concentrations of BMP molecules from the region near the colony edge where the concentration of signaling molecules is elevated. The roles of different components of the signaling pathway are also explained. Theoretical results are consistent with recent in vitro experiments, providing microscopic explanations for some features of early embryonic spatial patterning. Physical-chemical mechanisms of these processes are discussed.

  15. Structure Formation of Ultrathin PEO Films at Solid Interfaces—Complex Pattern Formation by Dewetting and Crystallization

    Directory of Open Access Journals (Sweden)

    Hans-Georg Braun

    2013-02-01

    Full Text Available The direct contact of ultrathin polymer films with a solid substrate may result in thin film rupture caused by dewetting. With crystallisable polymers such as polyethyleneoxide (PEO, molecular self-assembly into partial ordered lamella structures is studied as an additional source of pattern formation. Morphological features in ultrathin PEO films (thickness < 10 nm result from an interplay between dewetting patterns and diffusion limited growth pattern of ordered lamella growing within the dewetting areas. Besides structure formation of hydrophilic PEO molecules, n-alkylterminated (hydrophobic PEO oligomers are investigated with respect to self-organization in ultrathin films. Morphological features characteristic for pure PEO are not changed by the presence of the n-alkylgroups.

  16. Pattern formation in stromatolites: insights from mathematical modelling.

    Science.gov (United States)

    Cuerno, R; Escudero, C; García-Ruiz, J M; Herrero, M A

    2012-05-07

    To this day, computer models for stromatolite formation have made substantial use of the Kardar-Parisi-Zhang (KPZ) equation. Oddly enough, these studies yielded mutually exclusive conclusions about the biotic or abiotic origin of such structures. We show in this paper that, at our current state of knowledge, a purely biotic origin for stromatolites can neither be proved nor disproved by means of a KPZ-based model. What can be shown, however, is that whatever their (biotic or abiotic) origin might be, some morphologies found in actual stromatolite structures (e.g. overhangs) cannot be formed as a consequence of a process modelled exclusively in terms of the KPZ equation and acting over sufficiently large times. This suggests the need to search for alternative mathematical approaches to model these structures, some of which are discussed in this paper.

  17. Morphology-Induced Collective Behaviors: Dynamic Pattern Formation in Water-Floating Elements

    Science.gov (United States)

    Nakajima, Kohei; Ngouabeu, Aubery Marchel Tientcheu; Miyashita, Shuhei; Göldi, Maurice; Füchslin, Rudolf Marcel; Pfeifer, Rolf

    2012-01-01

    Complex systems involving many interacting elements often organize into patterns. Two types of pattern formation can be distinguished, static and dynamic. Static pattern formation means that the resulting structure constitutes a thermodynamic equilibrium whose pattern formation can be understood in terms of the minimization of free energy, while dynamic pattern formation indicates that the system is permanently dissipating energy and not in equilibrium. In this paper, we report experimental results showing that the morphology of elements plays a significant role in dynamic pattern formation. We prepared three different shapes of elements (circles, squares, and triangles) floating in a water-filled container, in which each of the shapes has two types: active elements that were capable of self-agitation with vibration motors, and passive elements that were mere floating tiles. The system was purely decentralized: that is, elements interacted locally, and subsequently elicited global patterns in a process called self-organized segregation. We showed that, according to the morphology of the selected elements, a different type of segregation occurs. Also, we quantitatively characterized both the local interaction regime and the resulting global behavior for each type of segregation by means of information theoretic quantities, and showed the difference for each case in detail, while offering speculation on the mechanism causing this phenomenon. PMID:22715370

  18. Time rescaling and pattern formation in biological evolution.

    Science.gov (United States)

    Igamberdiev, Abir U

    2014-09-01

    Biological evolution is analyzed as a process of continuous measurement in which biosystems interpret themselves in the environment resulting in changes of both. This leads to rescaling of internal time (heterochrony) followed by spatial reconstructions of morphology (heterotopy). The logical precondition of evolution is the incompleteness of biosystem's internal description, while the physical precondition is the uncertainty of quantum measurement. The process of evolution is based on perpetual changes in interpretation of information in the changing world. In this interpretation the external biospheric gradients are used for establishment of new features of organization. It is concluded that biological evolution involves the anticipatory epigenetic changes in the interpretation of genetic symbolism which cannot generally be forecasted but can provide canalization of structural transformations defined by the existing organization and leading to predictable patterns of form generation. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

  19. Estimating dew formation in rice, using seasonally averaged diel patterns of weather variables

    NARCIS (Netherlands)

    Luo, W.; Goudriaan, J.

    2004-01-01

    If dew formation cannot be measured it has to be estimated. Available simulation models for estimating dew formation require hourly weather data as input. However, such data are not available for places without an automatic weather station. In such cases the diel pattern of weather variables might

  20. Pattern formation and self-organization in a simple precipitation system

    NARCIS (Netherlands)

    Volford, Andras; Izsak, F.; Ripzam, Matyas; Lagzi, Istvan

    Various types of pattern formation and self-organization phenomena can be observed in biological, chemical, and geochemical systems due to the interaction of reaction with diffusion. The appearance of static precipitation patterns was reported first by Liesegang in 1896. Traveling waves and

  1. Formation of reciprocal appreciation patterns in small groups: an agent-based model

    OpenAIRE

    Koponen, Ismo T; Nousiainen, Maija

    2016-01-01

    Abstract Purpose In small cooperative and collaborative groups, patterns of interaction, discourse and dialogue are often strongly bidirectional; ties are reciprocal and reciprocated. This reciprocation of ties leads to the formation of interaction patterns that are reciprocated dyads (two individuals connected reciprocally) and triads (three individuals connected reciprocally). In this study, we use an agent-based model to explore how s...

  2. Integration of growth and patterning during vascular tissue formation in Arabidopsis

    NARCIS (Netherlands)

    Rybel, De B.; Adibi, M.; Breda, A.S.; Wendrich, J.R.; Smit, M.E.; Novák, O.; Yamaguchi, N.; Yoshida, S.; Isterdael, van G.; Palovaara, J.; Nijsse, B.; Boekschoten, M.V.; Hooiveld, G.J.E.J.; Beeckman, T.; Wagner, D.; Ljung, K.; Fleck, C.; Weijers, D.

    2014-01-01

    Coordination of cell division and pattern formation is central to tissue and organ development, particularly in plants where walls prevent cell migration. Auxin and cytokinin are both critical for division and patterning, but it is unknown how these hormones converge upon tissue development. We

  3. Formation of bromate in sulfate radical based oxidation: mechanistic aspects and suppression by dissolved organic matter.

    Science.gov (United States)

    Lutze, Holger V; Bakkour, Rani; Kerlin, Nils; von Sonntag, Clemens; Schmidt, Torsten C

    2014-04-15

    Sulfate radical based oxidation is discussed being a potential alternative to hydroxyl radical based oxidation for pollutant control in water treatment. However, formation of undesired by-products, has hardly been addressed in the current literature, which is an issue in other oxidative processes such as bromate formation in ozonation of bromide containing water (US-EPA and EU drinking water standard of bromate: 10 μg L(-1)). Sulfate radicals react fast with bromide (k = 3.5 × 10(9) M(-1) s(-1)) which could also yield bromate as final product. The mechanism of bromate formation in aqueous solution in presence of sulfate radicals has been investigated in the present paper. Further experiments were performed in presence of humic acids and in surface water for investigating the relevance of bromate formation in context of pollutant control. The formation of bromate by sulfate radicals resembles the well described mechanism of the hydroxyl radical based bromate formation. In both cases hypobromous acid is a requisite intermediate. In presence of organic matter formation of bromate is effectively suppressed. That can be explained by formation of superoxide formed in the reaction of sulfate radicals plus aromatic moieties of organic matter, since superoxide reduces hypobromous acid yielding bromine atoms and bromide. Hence formation of bromate can be neglected in sulfate radical based oxidation at typical conditions of water treatment. Copyright © 2014. Published by Elsevier Ltd.

  4. Pattern formation in the thiourea-iodate-sulfite system: Spatial bistability, waves, and stationary patterns

    Science.gov (United States)

    Horváth, Judit; Szalai, István; De Kepper, Patrick

    2010-06-01

    We present a detailed study of the reaction-diffusion patterns observed in the thiourea-iodate-sulfite (TuIS) reaction, operated in open one-side-fed reactors. Besides spatial bistability and spatio-temporal oscillatory dynamics, this proton autoactivated reaction shows stationary patterns, as a result of two back-to-back Turing bifurcations, in the presence of a low-mobility proton binding agent (sodium polyacrylate). This is the third aqueous solution system to produce stationary patterns and the second to do this through a Turing bifurcation. The stationary pattern forming capacities of the reaction are explored through a systematic design method, which is applicable to other bistable and oscillatory reactions. The spatio-temporal dynamics of this reaction is compared with that of the previous ferrocyanide-iodate-sulfite mixed Landolt system.

  5. Modeling and numerical investigations for hierarchical pattern formation in desiccation cracking

    Science.gov (United States)

    Hirobe, Sayako; Oguni, Kenji

    2017-11-01

    Desiccation cracking and its pattern formation are widely observed in nature. The network of the surface cracks forms polygonal cells with typical size. This crack pattern is not formed in a simultaneous manner, instead, formed in a sequential and hierarchical manner. The strain energy accumulated by the heterogeneous drying shrinkage strain is systematically released by the cracks. In this sense, desiccation cracking phenomenon can be regarded as a typical example of the pattern formation in the dynamical system with dissipation. We propose a mathematical model for the pattern formation in desiccation cracking with emphasis on the emergence of the typical length scale with the typical geometry resulting from the hierarchical cell tessellation. The desiccation crack phenomenon is modeled as the coupling of desiccation, deformation, and fracture. This coupling model is numerically solved by weakly coupled analysis of the desiccation process and the deformation/fracture process. The basic features of the desiccation crack pattern and its formation process reproduced by the numerical analysis show reasonable agreement with experimental observations. This agreement implies that the proposed coupling model properly addresses the fundamental mechanism for the hierarchical pattern formation in desiccation cracking.

  6. Morphological and physiological aspects of the early phases of flower bud formation of apple

    NARCIS (Netherlands)

    Verheij, F.A.

    1996-01-01


    For consistent yields in apple fruit production, knowledge of the factors affecting flower bud formation is required. The aim of this study was to gain more insight in the role of endogenous factors in flower bud formation of apple. The effects of temperature, applied gibberellin (GA

  7. FORMATION OF EMOTIONAL INTELLIGENCE AS A PREREQUISITE FOR SUCCESSFUL ACTIVITY OF FUTURE TEACHERS: THEORETICAL ASPECT

    Directory of Open Access Journals (Sweden)

    Наталія Петрова

    2015-09-01

    Full Text Available The essence of the “emotional intelligence” concept as cognitive and personal formation is revealed on the basis of psychological and educational literature. Its structural components, functionality and possibility of formation are also determined. The necessity of goal-oriented formation of emotional intelligence of future teachers in the training, which will contribute to their effective cognitive activity, emotions’ regulation, transformation of emotional experiences in a constructive direction, overcoming negative psycho-emotional outbreaks, avoiding stressful situations as a prerequisite for professional success is pointed out.

  8. Physical-geographical aspects of formation of artificial firn-ice massives

    OpenAIRE

    A. V. Sosnovsky; P. R. Nakalov; S. V. Nenashev

    2014-01-01

    The paper presents results of analysis of diurnal and potentially possible efficiency of water freezing aimed at construction of artificial infiltration (firn-ice) masses on the Russia’s territory. A method of jet ice-formation (winter sprinkling) developed in Institute of Geography of the Russian Academy of Sciences is used for freezing of the artificial firn-ice masses. The method applies far-reaching (long-distance) sprinkler installations for spraying of water and formation of thick (more...

  9. Survey on Road-Tyre Contact Patch Pattern and Wear Related Aspects

    Directory of Open Access Journals (Sweden)

    Azodo Adinife Patrick

    2017-11-01

    Full Text Available Motor vehicle end-users approaches to tyre safety issues in automobiles translate to a number of tyre failure risk factors. This study basically assessed tread wear pattern of tyres in passenger cars used on Nigeria roads. The result obtained showed that 75.4% of the assessed tyres showed uneven wear pattern resulting from incorrect tyre-road contact effects. This observed high proportion of uneven tyre tread wear pattern implies high rate of inconsequential regard for tyre safety.

  10. Pattern formation in the iodate-sulfite-thiosulfate reaction-diffusion system.

    Science.gov (United States)

    Liu, Haimiao; Pojman, John A; Zhao, Yuemin; Pan, Changwei; Zheng, Juhua; Yuan, Ling; Horváth, Attila K; Gao, Qingyu

    2012-01-07

    Sodium polyacrylate-induced pH pattern formation and starch-induced iodine pattern formation were investigated in the iodate-sulfite-thiosulfate (IST) reaction in a one-side fed disc gel reactor (OSFR). As binding agents of the autocatalyst of hydrogen ions or iodide ions, different content of sodium polyacrylate or starch has induced various types of pattern formation. We observed pH pulses, striped patterns, mixed spots and stripes, and hexagonal spots upon increasing the content of sodium polyacrylate and observed iodine pulses, branched patterns, and labyrinthine patterns upon increasing the starch content in the system. Coexistence of a pH front and an iodine front was also studied in a batch IST reaction-diffusion system. Both pH and iodine front instabilities were observed in the presence of sodium polyacrylate, i.e., cellular fronts and transient Turing structures resulting from the decrease in diffusion coefficients of activators. The mechanism of multiple feedback may explain the different patterns in the IST reaction-diffusion system.

  11. Pattern formation in single-phase FAC. A stability analysis of an oxide layer

    Energy Technology Data Exchange (ETDEWEB)

    Zinemanas, Daniel [The Israel Electric Corp., Haifa (Israel). Dept. of Chemistry; Herszage, Amiel [The Israel Electric Corp., Haifa (Israel). Dept. of Energy Technologies Development

    2013-03-15

    Pattern formation is a salient characteristic of the flow-accelerated corrosion process, particularly in single-phase flow, where a typical ''orange peel'' surface texture is normally formed. The process of such pattern formation is, however, not well understood. In order to gain some insight into the role of the various processes and parameters involved in this process, a linear stability analysis of an oxide layer based on the Sanchez-Caldera model was performed. According to the results obtained in this study, it follows that the oxide layer is stable regarding perturbations of the oxide thickness or the reaction constant, but it is unstable in respect to perturbations of the mass transfer coefficient. These results suggest therefore that the flow, and not local surface in homogeneities, plays a central role in the pattern formation process. (orig.)

  12. Pattern Formation in a Cross-Diffusive Holling-Tanner Model

    Directory of Open Access Journals (Sweden)

    Weiming Wang

    2012-01-01

    Full Text Available We present a theoretical analysis of the processes of pattern formation that involves organisms distribution and their interaction of spatially distributed population with self- as well as cross-diffusion in a Holling-Tanner predator-prey model; the sufficient conditions for the Turing instability with zero-flux boundary conditions are obtained; Hopf and Turing bifurcation in a spatial domain is presented, too. Furthermore, we present novel numerical evidence of time evolution of patterns controlled by self- as well as cross-diffusion in the model, and find that the model dynamics exhibits a cross-diffusion controlled formation growth not only to spots, but also to strips, holes, and stripes-spots replication. And the methods and results in the present paper may be useful for the research of the pattern formation in the cross-diffusive model.

  13. Interfacial wave theory of pattern formation in solidification dendrites, fingers, cells and free boundaries

    CERN Document Server

    Xu, Jian-Jun

    2017-01-01

    This comprehensive work explores interfacial instability and pattern formation in dynamic systems away from the equilibrium state in solidification and crystal growth. Further, this significantly expanded 2nd edition introduces and reviews the progress made during the last two decades. In particular, it describes the most prominent pattern formation phenomena commonly observed in material processing and crystal growth in the framework of the previously established interfacial wave theory, including free dendritic growth from undercooled melt, cellular growth and eutectic growth in directional solidification, as well as viscous fingering in Hele-Shaw flow. It elucidates the key problems, systematically derives their mathematical solutions by pursuing a unified, asymptotic approach, and finally carefully examines these results by comparing them with the available experimental results. The asymptotic approach described here will be useful for the investigation of pattern formation phenomena occurring in a much b...

  14. THEORETICAL-METHODOLOGICAL ASPECTS OF BACKGROUNDS TO EDUCATIONAL ACTIVITY FORMATION OF PRESCHOOL AGED CHILDREN

    Directory of Open Access Journals (Sweden)

    Nadejda V. Babinova

    2015-01-01

    Full Text Available The purpose of the paper is selection and justification background components to teaching activity and indicators of its formedness among preschool children.Results. The alternatives of using project activity for forming backgrounds for learning activities of high preschool aged children are shown as a form of learning process organization. The concepts «learning activity» and «general learning activities» are considered. The conditions of project activity realization in preschool education organizations are determined.Scientific novelty. The concept «backgrounds for learning activities» is defined; it is proposed to consider it as necessary certain qualities for the emergence of personal, regulatory, cognitive and communicative aspects of learning activities that reflect different aspects of training activity.Practical significance. The research implementations can be used in the teacher’s practice at pre-school education, and in the family education.

  15. CLINICAL ASPECTS AND BIOCHEMICAL MARKERS OF BONE FORMATION AFTER LIVER TRANSPLANTATION

    Directory of Open Access Journals (Sweden)

    V.P. Buzulina

    2012-01-01

    Full Text Available Biochemical markers of bone formation [osteocalcin (OC, N-terminal propeptid of type 1 procollagen (P1NP, bone isoferment of alkaline phosphatase (BALP] were estimated in 34 recipients after liver transplantation. Three types of deviation have been demonstrated: combination elevated circulating levels OC and P1NP with normal levels BALP in recipients without clinical postoperative complication; combination lower levels OC and BALP with normal levels P1NP in recipients as a result of corticosteroid therapy prior/ following transplantation; superior levels P1NP with normal levels OC and BALP which results excessive accumulation hepatic collagen formation in recipients with postoperative clinical complication. 

  16. Nanoscale E-Cadherin ligand patterns show threshold size for cellular adhesion and adherence junction formation

    DEFF Research Database (Denmark)

    Kristensen, Stine H; Pedersen, Gitte Albinus; Nejsum, Lene Niemann

    2012-01-01

    of adherence junctions in epithelial cells. Cells at 100 nm patterns show poor adhesion, while larger pattern sizes show both good adhesion, significant spreading and defined cortical actin. We estimate a threshold of 0.03μm2 for epithelial cellular attachment via E-Cadherin......The role of ligand spatial distribution on the formation of cadherin mediated cell-cell contacts is studied utilizing nanopatterns of E-cadherin ligands. Protein patches ranging in size from 100 nm to 800 nm prepared by colloidal lithography critically influence adhesion, spreading and formation...

  17. Quantum properties of transverse pattern formation in second-harmonic generation

    DEFF Research Database (Denmark)

    Bache, Morten; Scotto, P.; Zambrini, R.

    2002-01-01

    these equations through extensive numerical simulations and analytically in the linearized limit. Our study, made below and above the threshold of pattern formation, is guided by a microscopic scheme of photon interaction underlying pattern formation in second-harmonic generation. Close to the threshold...... transverse wave number, which are not identified in a linearized analysis, are also described. The intensity differences between opposite points of the far fields are shown to exhibit sub-Poissonian statistics, revealing the quantum nature of the correlations. We observe twin beam correlations in both...

  18. Insular dentin formation pattern in human odontogenesis in relation to the scalloped dentino-enamel junction.

    Science.gov (United States)

    Radlanski, Ralf J; Renz, Herbert

    2007-01-01

    This study is a first report on the modality of early dentin formation in respect to the scalloped pattern of the dentino-enamel junction (DEJ). We applied scanning electron microscopy (SEM), transmission electron microscopy (TEM), histological serial sections, and three-dimensional (3D) reconstructions. TEM and SEM showed scallops and secondary scallops on the DEJ of deciduous dental primordia and on deciduous teeth with the enamel cap removed. This peculiar outline of the DEJ requires a specific dentin formation pattern; histological sections showed that dentin formation began at the brims of the scallops, seen as triangular spikes in serial sections. The dentin formation front was not uniform; instead, it was characterized by multiple, insular forming centers, as revealed by our 3D reconstructions. As thicker dentin layers formed, the islands became confluent. Factors are discussed, which may lead to crimpling of the inner enamel epithelium, and maintained as the scalloped pattern of the DEJ develops. Signaling patterns in accordance with the insular dentin formation are unknown so far.

  19. Hardware format pattern banks for the Associative memory boards in the ATLAS Fast Tracker Trigger System

    CERN Document Server

    Grewcoe, Clay James

    2014-01-01

    The aim of this project is to streamline and update the process of encoding the pattern bank to hardware format in the Associative memory board (AM) of the Fast Tracker (FTK) for the ATLAS detector. The encoding is also adapted to Gray code to eliminate possible misreadings in high frequency devices such as this one, ROOT files are used to store the pattern banks because of the compression utilized in ROOT.

  20. PLANT DEVELOPMENT Integration of growth and patterning during vascular tissue formation in Arabidopsis

    OpenAIRE

    De Rybel, B; Adibi, M.; Breda, A.S.; Wendrich, J.R.; Smit, M.E.; Novák, O.; Yamaguchi, N.; Weijers, D.

    2014-01-01

    Coordination of cell division and pattern formation is central to tissue and organ development, particularly in plants where walls prevent cell migration. Auxin and cytokinin are both critical for division and patterning, but it is unknown how these hormones converge upon tissue development. We identify a genetic network that reinforces an early embryonic bias in auxin distribution to create a local, nonresponding cytokinin source within the root vascular tissue. Experimental and theoretical ...

  1. Delineation of the key aspects in the regulation of epithelial monolayer formation

    NARCIS (Netherlands)

    Aschauer, Lydia; Gruber, Leonhard N; Pfaller, Walter; Limonciel, Alice; Athersuch, Toby J; Cavill, Rachel; Khan, Abdulhameed; Gstraunthaler, Gerhard; Grillari, Johannes; Grillari-Voglauer, Regina; Hewitt, Philip; Leonard, Martin O; Wilmes, Anja; Jennings, Paul

    The formation, maintenance, and repair of epithelial barriers are of critical importance for whole-body homeostasis. However, the molecular events involved in epithelial tissue maturation are not fully established. To this end, we investigated the molecular processes involved in renal epithelial

  2. Pattern Formation inside a Rotating Cylinder Partially Filled with Liquid and Granular Medium

    Directory of Open Access Journals (Sweden)

    Veronika Dyakova

    2014-01-01

    Full Text Available The paper focuses on the experimental study of the dynamics of liquid and granular medium in a rapidly rotating horizontal cylinder. In the cavity frame gravity field performs rotation and produces oscillatory liquid flow, which is responsible for the series of novel effects; the problem corresponds to “vibrational mechanics”—generation of steady flows and patterns by oscillating force field. The paper presents the initial results of experimental study of a novel pattern formation effect which is observed at the interface between fluid and sand and which takes the form of ripples extended along the axis of rotation. The initial results of experimental research of a novel effect of pattern formation at the interface between fluid and sand in the form of ripples extended along the axis of rotation are presented. The spatial period of the patterns is studied in dependence on liquid volume, viscosity, and rotation rate. The experimental study of long time dynamics of pattern formation manifests that regular ripples transform into a series of dunes within a few minutes or dozens of minutes. The variety of patterns is determined by the interaction of two types of liquid flows induced by gravity: oscillatory and steady azimuthal flows near the sand surface.

  3. Pattern formation in directional solidification under shear flow. I. Linear stability analysis and basic patterns.

    Science.gov (United States)

    Marietti, Y; Debierre, J M; Bock, T M; Kassner, K

    2001-06-01

    An asymptotic interface equation for directional solidification near the absolute stability limit is extended by a nonlocal term describing a shear flow parallel to the interface. In the long-wave limit considered, the flow acts destabilizing on a planar interface. Moreover, linear stability analysis suggests that the morphology diagram is modified by the flow near onset of the Mullins-Sekerka instability. Via numerical analysis, the bifurcation structure of the system is shown to change. Besides the known hexagonal cells, structures consisting of stripes arise. Due to its symmetry-breaking properties, the flow term induces a lateral drift of the whole pattern, once the instability has become active. The drift velocity is measured numerically and described analytically in the framework of a linear analysis. At large flow strength, the linear description breaks down, which is accompanied by a transition to flow-dominated morphologies which is described in the following paper. Small and intermediate flows lead to increased order in the lattice structure of the pattern, facilitating the elimination of defects. Locally oscillating structures appear closer to the instability threshold with flow than without.

  4. CMOS patterning over high-aspect ratio topographies for N10/N7 using spin-on carbon hardmasks

    Science.gov (United States)

    Hopf, Toby; Ercken, Monique; Mannaert, Geert; Kunnen, Eddy; Tao, Zheng; Vandenbroeck, Nadia; Sebaai, Farid; Kikuchi, Yoshiaki; Mertens, Hans; Kubicek, Stefan; Demuynck, Steven; Horiguchi, Naoto

    2017-03-01

    In this paper proof-of-principle demonstrations of spin-on carbon (SOC)/spin-on glass (SOG)-based lithography processes which could replace standard patterning stacks within the FEOL for upcoming advanced nodes like N10/N7 are presented. At these dimensions the standard lithography approaches that have been utilized within the previous nodes will begin to run into fundamental limitations as a result of the extremely high aspect ratios of the device topography, requiring both new materials as well as new patterning flows in order to allow for continued device scaling. Here, novel SOC/SOG-based patterning flows have been demonstrated which could be applied to implement Source Drain Extension implantations and epitaxial growth processes for CMOS FinFET device architectures even down at N10/N7 dimensions.

  5. Pattern Formation in a Predator-Prey Model with Both Cross Diffusion and Time Delay

    Directory of Open Access Journals (Sweden)

    Boli Xie

    2014-01-01

    Full Text Available A predator-prey model with both cross diffusion and time delay is considered. We give the conditions for emerging Turing instability in detail. Furthermore, we illustrate the spatial patterns via numerical simulations, which show that the model dynamics exhibits a delay and diffusion controlled formation growth not only of spots and stripe-like patterns, but also of the two coexist. The obtained results show that this system has rich dynamics; these patterns show that it is useful for the diffusive predation model with a delay effect to reveal the spatial dynamics in the real model.

  6. Synergetic aspects of gas-discharge: lateral patterns in dc systems with a high ohmic barrier

    Science.gov (United States)

    Purwins, H.-G.; Stollenwerk, L.

    2014-12-01

    The understanding of self-organized patterns in spatially extended nonlinear dissipative systems is one of the most challenging subjects in modern natural sciences. Such patterns are also referred to as dissipative structures. We review this phenomenon in planar low temperature dc gas-discharge devices with a high ohmic barrier. It is demonstrated that for these systems a deep qualitative understanding of dissipative structures can be obtained from the point of view of synergetics. At the same time, a major contribution can be made to the general understanding of dissipative structures. The discharge spaces of the experimentally investigated systems, to good approximation, have translational and rotational symmetry by contraction. Nevertheless, a given system may exhibit stable current density distributions and related patterns that break these symmetries. Among the experimentally observed fundamental patterns one finds homogeneous isotropic states, fronts, periodic patterns, labyrinth structures, rotating spirals, target patterns and localized filaments. In addition, structures are observed that have the former as elementary building blocks. Finally, defect structures as well as irregular patterns are common phenomena. Such structures have been detected in numerous other driven nonlinear dissipative systems, as there are ac gas-discharge devices, semiconductors, chemical solutions, electrical networks and biological systems. Therefore, from the experimental observations it is concluded that the patterns in planar low temperature dc gas-discharge devices exhibit universal behavior. From the theoretical point of view, dissipative structures of the aforementioned kind are also referred to as attractors. The possible sets of attractors are an important characteristic of the system. The number and/or qualitative nature of attractors may change when changing parameters. The related bifurcation behavior is a central issue of the synergetic approach chosen in the present

  7. Some Aspects of Formation of Cracks in FRC with Main Reinforcement

    DEFF Research Database (Denmark)

    Brincker, Rune; Simonsen, J.; Hansen, W.

    1997-01-01

    hardening. a simple model is presented which takes into account the debonding between the reinforcement and the fiber reinforced matrix as well as the crack opening relation of the fiber reinforced matrix. The fracture process is described from the un-cracked state and formation of the first crack till...... behaviour of the fibre reinforced matrix. The model is compaired with experiments, and reasonable aggreement is achieved....

  8. Structure Formation of Ultrathin PEO Films at Solid Interfaces—Complex Pattern Formation by Dewetting and Crystallization

    Science.gov (United States)

    Braun, Hans-Georg; Meyer, Evelyn

    2013-01-01

    The direct contact of ultrathin polymer films with a solid substrate may result in thin film rupture caused by dewetting. With crystallisable polymers such as polyethyleneoxide (PEO), molecular self-assembly into partial ordered lamella structures is studied as an additional source of pattern formation. Morphological features in ultrathin PEO films (thickness PEO molecules, n-alkylterminated (hydrophobic) PEO oligomers are investigated with respect to self-organization in ultrathin films. Morphological features characteristic for pure PEO are not changed by the presence of the n-alkylgroups. PMID:23385233

  9. INTEGRATION PATTERNS OF ROMANIAN IMMIGRANTS IN THE ISRAELI SOCIETY: SOCIOPOLITICAL ASPECTS

    Directory of Open Access Journals (Sweden)

    Adina BABEŞ

    2013-06-01

    Full Text Available This paper comprises parts of the theoretical and empirical research that I have conducted for my PhD studies. The theoretical structure focuses on the evaluative framework of capabilities, as it has been developed by Martha Nussbaum and the social and political aspects of Thomas Janoski’s operationalization of citizenship. The analytical framework that I came up with was further applied on the interviews that I have conducted with Romanian olim in Israel. This allowed me to come up with significant results concerning their integration within the Israeli society. These results cover aspects that belong to areas of one’s social, political, cultural life. The empirical research itself was a qualitative one with semi-structured interviews, while the results were further analyzed using the discourse analysis method.

  10. Rhythmic pattern formations in gels and Matalon–Packter law: A ...

    Indian Academy of Sciences (India)

    The periodic precipitation pattern formation in gelatinous media is interpreted as a moving boundary problem. The time law, spacing law and width law are revisited on the basis of the new scenario. The explicit dependence of the geometric structure on the initial concentrations of the reactants is derived. Matalon–Packter ...

  11. Spatial Heterogeneity and Imperfect Mixing in Chemical Reactions: Visualization of Density-Driven Pattern Formation

    Directory of Open Access Journals (Sweden)

    Sabrina G. Sobel

    2009-01-01

    Full Text Available Imperfect mixing is a concern in industrial processes, everyday processes (mixing paint, bread machines, and in understanding salt water-fresh water mixing in ecosystems. The effects of imperfect mixing become evident in the unstirred ferroin-catalyzed Belousov-Zhabotinsky reaction, the prototype for chemical pattern formation. Over time, waves of oxidation (high ferriin concentration, blue propagate into a background of low ferriin concentration (red; their structure reflects in part the history of mixing in the reaction vessel. However, it may be difficult to separate mixing effects from reaction effects. We describe a simpler model system for visualizing density-driven pattern formation in an essentially unmixed chemical system: the reaction of pale yellow Fe3+ with colorless SCN− to form the blood-red Fe(SCN2+ complex ion in aqueous solution. Careful addition of one drop of Fe(NO33 to KSCN yields striped patterns after several minutes. The patterns appear reminiscent of Rayleigh-Taylor instabilities and convection rolls, arguing that pattern formation is caused by density-driven mixing.

  12. Collective motion of cells mediates segregation and pattern formation in co-cultures.

    Directory of Open Access Journals (Sweden)

    Elod Méhes

    Full Text Available Pattern formation by segregation of cell types is an important process during embryonic development. We show that an experimentally yet unexplored mechanism based on collective motility of segregating cells enhances the effects of known pattern formation mechanisms such as differential adhesion, mechanochemical interactions or cell migration directed by morphogens. To study in vitro cell segregation we use time-lapse videomicroscopy and quantitative analysis of the main features of the motion of individual cells or groups. Our observations have been extensive, typically involving the investigation of the development of patterns containing up to 200,000 cells. By either comparing keratocyte types with different collective motility characteristics or increasing cells' directional persistence by the inhibition of Rac1 GTP-ase we demonstrate that enhanced collective cell motility results in faster cell segregation leading to the formation of more extensive patterns. The growth of the characteristic scale of patterns generally follows an algebraic scaling law with exponent values up to 0.74 in the presence of collective motion, compared to significantly smaller exponents in case of diffusive motion.

  13. [Assessment of teaching quality: from normative aspects to the relapse of the formative project].

    Science.gov (United States)

    Binetti, P; Petitti, T

    2001-01-01

    To base the medical student's education on scientific evidence, we need to applied to medical education the same evidence-based methods characteristics of scientific research. Our goal is to change curricula, educational methods, teaching of clinical skills, in order to improve professional training of medical and nursing students. Our work highlights the student's point of view relative to changes of educational project, that is a constitutive aspect of best evidence medical education. Every year, an evaluation test is submitted to all medical, nursing and nutritionist students of Università "Campus Bio-Medico". This test worked out by both teachers and students, is designed to explore student's perception of all aspects, educational and relational, related to the university. Data are been processed using explorative analysis of principal elements, and then using factorial analysis with "Varimax", data orthogonal rotation. A specific database in Microsoft Access, is been used for data entry, while statistical analysis is been performed using didactic software STATA (Stata Corporation). According to data, we can claim that our students evaluate their teachers and tutors depending on two principal factors: on one hand educational skills, that include personal competence on teaching and getting in touch with the students; on the other hand managing and planning skills. These are very important to overcome the dangers related to integrated courses, composed by many different scientific matters and planned by many teachers: without a very good planning, students may not be allowed to achieve clear, synthetic and well-structured knowledge. Students want to be regarded as adult learners, they wish to achieve a well structured knowledge, both composed by theoretical and practical skills and personal relations, in order to think of every activity according to an organic knowledge.

  14. The effect of the signalling scheme on the robustness of pattern formation in development

    KAUST Repository

    Kang, H.-W.

    2012-03-21

    Pattern formation in development is a complex process which involves spatially distributed signals called morphogens that influence gene expression and thus the phenotypic identity of cells. Usually different cell types are spatially segregated, and the boundary between them may be determined by a threshold value of some state variable. The question arises as to how sensitive the location of such a boundary is to variations in properties, such as parameter values, that characterize the system. Here, we analyse both deterministic and stochastic reaction-diffusion models of pattern formation with a view towards understanding how the signalling scheme used for patterning affects the variability of boundary determination between cell types in a developing tissue.

  15. Formation of locomotor patterns in decerebrate cats in conditions of epidural stimulation of the spinal cord.

    Science.gov (United States)

    Gerasimenko, Yu P; Lavrov, I A; Bogacheva, I N; Shcherbakova, N A; Kucher, V I; Musienko, P E

    2005-03-01

    Acute experiments on decerebrate cats were performed to study the mechanism of formation of the locomotor pattern in conditions of epidural stimulation of the spinal cord. These studies showed that only segments L3-L5 contributed to generating the stepping pattern in the hindlimbs. At the optimum frequency (5-10 Hz) of stimulation of these segments, formation of electromyographic burst activity in the flexor muscles was mainly due to polysynaptic reflex responses with latencies of 80-110 msec. In the extensor muscles, this process involved the interaction of a monosynaptic reflex and polysynaptic activity. In epidural stimulation, the stepping pattern was specified by spinal structures, while peripheral feedback had modulatory influences.

  16. The Effective Surface Roughness Scaling of the Gelation Surface Pattern Formation

    Science.gov (United States)

    Mizoue, T.; Tokita, M.; Honjo, H.; Barraza, H. J.; Katsuragi, H.

    The surface pattern formation on a gelation surface is analyzed using an effective surface roughness. The spontaneous surface deformation on DiMethylAcrylAmide (DMAA) gelation surface is controlled by temperature, initiator concentration, and ambient oxygen. The effective surface roughness is defined using 2-dimensional photo data to characterize the surface deformation. Parameter dependence of the effective surface roughness is systematically investigated. We find that decrease of ambient oxygen, increase of initiator concentration, and high temperature tend to suppress the surface deformation in almost similar manner. That trend allows us to collapse all the data to a unified master curve. As a result, we finally obtain an empirical scaling form of the effective surface roughness. This scaling is useful to control the degree of surface patterning. However, the actual dynamics of this pattern formation is not still uncovered.

  17. Formation of Au nanoparticle arrays on hydrogel two-dimensional patterns based on poly(vinylpyrrolidone)

    Science.gov (United States)

    Tsukuda, Satoshi; Okamoto, Kazumasa; Yamamoto, Hiroki; Kozawa, Takahiro; Omata, Takahisa

    2017-06-01

    In this study, we demonstrated the formation of Au nanoparticle (NP) arrays on two-dimensional gel patterns based on poly(vinylpyrrolidone) (PVP), which were fabricated by electron beam (EB) lithography. Au NPs were preferentially formed on PVP patterns by photoreduction in HAuCl4-containing MeOH solutions without any surface treatment. The number density of the Au NPs was highly controlled by changing the UV irradiation time; therefore, increasing the UV irradiation time produced Au NP arrays with highly packed Au NPs on the PVP patterns. The size of the cross-linking networks of PVP, which depended on the cross-linking density induced by EB irradiation, plays a very important role in the formation of Au NPs in the Au ion-containing solution under UV irradiation. We discussed the difference in the fabricated Au NP arrays at different EB exposure doses in terms of the interaction between the gel networks and the Au NPs formed.

  18. Preliminary observations on isotretinoin-induced ear malformations and pattern formation of the external ear.

    Science.gov (United States)

    Lammer, E

    1991-01-01

    Retinoic acid is a morphogenic substance capable of inducing a variety of limb malformations, including duplications and reduction-type defects. Whether retinoic acid plays a similar role in controlling pattern formation of other vertebrate structures is unclear. Many fetuses and infants exposed to isotretinoin (13-cis-retinoic acid) in utero have a characteristic pattern of anomalies, chiefly involving brain, craniofacial, and thymic morphogenesis. Among the craniofacial anomalies, external ear malformations are common and the specific types of auricular malformations include partial duplications, and tissue reductions and displacements. These similarities to the types of limb malformations that retinoic acid can induce suggest that retinoic acid may play an important role in controlling pattern formation of facial structures.

  19. Migration Aspect in the Oil-Bearing Capacity of the Domanic Formation in Tatarstan

    Directory of Open Access Journals (Sweden)

    I.N. Plotnikova

    2017-11-01

    Full Text Available The article highlights the problem of oil bearing of the Domanic Formation on the territory of the Republic of Tatarstan. Comparing the geochemical characteristics of bitumen of the Semilukskian horizon and oils of the Eifelian-Frasnian terrigenous complex, it was concluded that in the Semilukskian horizon, mobile bitumen are present along with the syngenetic dispersed matter, which, according to gas-liquid chromatography, are identical to the oil of the underlying terrigenous deposits of the Pashian and Timanian horizons. These bitumens are migratory and reflect the process of upward vertical oil migration, which is responsible for the formation of industrial deposits in the Semilukskian, Sargaevskian, and Rechitskian horizons in those areas where the lithological features of the rocks and the development of superficial fracturing in them make it possible to create a collecting space. The rocks of the Domanic facies should be considered as accumulation or accumulation-generation system, oil deposits of which were formed due to oil systems generated in other sources. New methods of search are needed that allow us to quickly assess the content of migratory hydrocarbons and syngenetic organic matter. This is possible on the basis of a rapid study of the sludge, which will allow to assess the presence of mobile hydrocarbons and their quantity during drilling. An analysis of the spatial distribution of migratory hydrocarbons will allow localizing oil migration channels.

  20. Structural aspects of glass-formation in Ni-Nb melts

    Energy Technology Data Exchange (ETDEWEB)

    Holland-Moritz, D.; Yang, F.; Gegner, J.; Meyer, A. [Institut für Materialphysik im Weltraum, Deutsches Zentrum für Luft- und Raumfahrt (DLR), 51170 Köln (Germany); Hansen, T. [Institut Laue-Langevin (ILL), 38042 Grenoble (France); Ruiz-Martín, M. D. [Grup de Caracterització de Materials, Departament de Física i Enginyeria Nuclear, Universitat Politècnica de Catalunya, Barcelona (Spain); Institut für Materialphysik im Weltraum, Deutsches Zentrum für Luft- und Raumfahrt (DLR), 51170 Köln (Germany)

    2014-05-28

    We report on investigations of the static structure factors of glass-forming Ni{sub 59.5}Nb{sub 40.5} alloy melts by combination of the containerless processing technique of electrostatic levitation with neutron diffraction. By application of the isotopic substitution method, the full set of partial structure factors was determined. The short-range order in liquid Ni{sub 59.5}Nb{sub 40.5} is characterized by a large nearest neighbor coordination number of Z{sub NN} = 14.3 and a chemical short-range order with an affinity for the formation of heterogeneous Nb-Ni nearest neighbors. The structure factors observed here in the liquid state closely resemble those reported for amorphous Nb-Ni solids. The comparison with earlier results on the short-range structure in Zr-based glass-forming melts suggests that a large local density of packing, chemical order, and structural frustration are, amongst others, common structural properties of these metallic glass-forming systems, which favor glass-formation.

  1. The gender aspect of the formation of values of physical training of students in higher education

    Directory of Open Access Journals (Sweden)

    Marchenko O. Iu.

    2013-09-01

    Full Text Available The analysis of the place of physical education in the hierarchy of values of university students. Addresses gender characteristics of the formation of values in physical education students. The study involved students in the amount of 419 people (206 boys, 213 girls and first-year students (35 girls, 16 boys. The findings suggest that a combination of slightly traditionally masculine and feminine qualities in one person. It was found that in the study of gender differences in the choice of human traits observed distinct gender stereotypes. Among the young men identified the following personality traits: the ability to achieve goals by any means, physical strength, sociability, communication skills. Girls are the following traits: sociability, communication skills, good looks, intelligence and a wide range of interests, the ability to behave in public, optimism and prudence.

  2. Interlinked nonlinear subnetworks underlie the formation of robust cellular patterns in Arabidopsis epidermis: a dynamic spatial model

    Directory of Open Access Journals (Sweden)

    Padilla-Longoria Pablo

    2008-11-01

    Full Text Available Abstract Background Dynamical models are instrumental for exploring the way information required to generate robust developmental patterns arises from complex interactions among genetic and non-genetic factors. We address this fundamental issue of developmental biology studying the leaf and root epidermis of Arabidopsis. We propose an experimentally-grounded model of gene regulatory networks (GRNs that are coupled by protein diffusion and comprise a meta-GRN implemented on cellularised domains. Results Steady states of the meta-GRN model correspond to gene expression profiles typical of hair and non-hair epidermal cells. The simulations also render spatial patterns that match the cellular arrangements observed in root and leaf epidermis. As in actual plants, such patterns are robust in the face of diverse perturbations. We validated the model by checking that it also reproduced the patterns of reported mutants. The meta-GRN model shows that interlinked sub-networks contribute redundantly to the formation of robust hair patterns and permits to advance novel and testable predictions regarding the effect of cell shape, signalling pathways and additional gene interactions affecting spatial cell-patterning. Conclusion The spatial meta-GRN model integrates available experimental data and contributes to further understanding of the Arabidopsis epidermal system. It also provides a systems biology framework to explore the interplay among sub-networks of a GRN, cell-to-cell communication, cell shape and domain traits, which could help understanding of general aspects of patterning processes. For instance, our model suggests that the information needed for cell fate determination emerges from dynamic processes that depend upon molecular components inside and outside differentiating cells, suggesting that the classical distinction of lineage versus positional cell differentiation may be instrumental but rather artificial. It also suggests that interlinkage

  3. New aspects of firing pattern autocontrol in oxytocin and vasopressin neurones.

    Science.gov (United States)

    Moos, F; Gouzènes, L; Brown, D; Dayanithi, G; Sabatier, N; Boissin, L; Rabié, A; Richard, P

    1998-01-01

    In the rat, oxytocin (OT) and vasopressin (AVP) neurones exhibit specific electrical activities which are controlled by OT and AVP released from soma and dendrites within the magnocellular hypothalamic nuclei. OT enhances amplitude and frequency of suckling-induced bursts, and changes basal firing characteristics: spike patterning becomes very irregular (spike clusters separated by long silences), firing rate is highly variable, oscillating before facilitated bursts. This unstable behaviour which markedly decreases during hyperosmotic stimulation (interrupting bursting) could be a prerequisite for bursting. The effects of AVP depend on the initial phasic pattern of AVP neurones: AVP excites weakly active neurones (increasing burst duration, decreasing silences) and inhibits highly active neurones; neurones with intermediate phasic activity are unaffected. Thus, AVP ensures all AVP neurones discharge with moderate phasic activity (bursts and silences lasting 20-40 s), known to optimise systemic AVP release. V1a-type receptors are involved in AVP actions. In conclusion, OT and AVP control their respective neurones in a complex manner to favour the patterns of activity which are the best suited for an efficient systemic hormone release.

  4. DNA damage and radical reactions: Mechanistic aspects, formation in cells and repair studies

    Energy Technology Data Exchange (ETDEWEB)

    Cadet, J.; Ravanat, J.L. [CEA Grenoble, Inst Nanosci and Cryogenie, SCIB-UMR-E 3, Lab Les Acides Nucl, UJF, F-38054 Grenoble 9 (France); Carell, T. [Univ Munich, Dept Chem and Biochem, Ctr Integrat Prot Sci, D-81377 Munich (Germany); Cellai, L. [CNR, Ist Cristalog, Monterotondo Stn, I-00016 Rome (Italy); Chatgilialoglu, Ch. [CNR, ISOF, I-40129 Bologna, (Italy); Gimisis, Th. [Univ Athens, Dept Chem, Organ Chem Lab, Athens 15784, (Greece); Miranda, M. [Univ Politecn Valencia, Inst Technol Quim, Dept Quim, Valencia 46022 (Spain); O' Neill, P. [Univ Oxford, Oxford OX3 7DQ (United Kingdom); Robert, M. [Univ Paris 07, CNRS, UMR 7591, Electrochim Mol Lab, F-75251 Paris 05 (France)

    2008-07-01

    Several examples of oxidative and reductive reactions of DNA components that lead to single and tandem modifications are discussed in this review. These include nucleophilic addition reactions of the one-electron oxidation-mediated guanine radical cation and the one-electron reduced intermediate of 8-bromo-purine 2'-de-oxy-ribo-nucleosides that give rise to either an oxidizing guanine radical or related 5',8-cyclo-purine nucleosides. In addition, mechanistic insights into the reductive pathways involved in the photolyase induced reversal of cyclo-buta-cli-pyrimidine and pyrimidine (6-4) pyrimidone photoproducts are provided. Evidence for the occurrence and validation in cellular DNA of (OH){sup {center_dot}} radical degradation pathways of guanine that have been established in model systems has been gained from the accurate measurement of degradation products. Relevant information on biochemical aspects of the repair of single and clustered oxidatively generated damage to DNA has been gained from detailed investigations that rely on the synthesis of suitable modified probes. Thus the preparation of stable carbocyclic derivatives of purine nucleoside containing defined sequence oligonucleotides has allowed detailed crystallographic studies of the recognition step of the base damage by enzymes implicated in the base excision repair (BER) pathway. Detailed insights are provided on the BER processing of non-double strand break bi-stranded clustered damage that may consist of base lesions, a single strand break or abasic sites and represent one of the main deleterious classes of radiation-induced DNA damage. (authors)

  5. Physical-geographical aspects of formation of artificial firn-ice massives

    Directory of Open Access Journals (Sweden)

    A. V. Sosnovsky

    2014-01-01

    Full Text Available The paper presents results of analysis of diurnal and potentially possible efficiency of water freezing aimed at construction of artificial infiltration (firn-ice masses on the Russia’s territory. A method of jet ice-formation (winter sprinkling developed in Institute of Geography of the Russian Academy of Sciences is used for freezing of the artificial firn-ice masses. The method applies far-reaching (long-distance sprinkler installations for spraying of water and formation of thick (more than 7 m for a day masses of artificial firn. In winter the sprinkler allows freezing of both the monolithic ice and artificial firn. A practical implementation of this method is licensed and realized for construction of ice passages, bridges, and winter automobile roads. Testing of the method demonstrated that the artificial firn can be used for desalination and purification of polluted salt waters with high efficiency. That is stipulated by both, the high productivity of the method (about 1500 tons of artificial firn for a day at the air temperature of −20°С, and low mineralization of the firn relative to initial salt water. Winter sprinkling is carried out when mean daily air temperature drops below –5 ∞С. Estimating of productivity of the artificial firn and monolithic ice under present-day climatic conditions was made over the Russia’s territory. Analysis of the climate conditions for periods 2001–2010 and 1961–2000 have shown that reduction of the firn productivity changed from 5-10% in Siberia up to 20–40% in central and southern regions of the European Russia. At the present time, a potentially possible volume of the artificial firn freezing being produced in cold seasons changes from 500 thousand tons in northern areas of Yakutia down to 10 thousand in center of European Russia. Productivity of the monolithic ice freezing by a method of thin-layer water pouring is twice lower in central areas of Yakutia than on the Arctic seashores

  6. Psychomotor education, an aspect of general formation of pre-school children

    Directory of Open Access Journals (Sweden)

    Ardian Shingjergji

    2013-06-01

    Full Text Available Current developments of scientific thinking in the field of education are increasingly demanding in various disciplines for young people as a matter of urgency. It is already known that child development is conditioned by ancestry, socio-cultural environment, including interaction with peers and adults. Albanian institutions (kindergarten compared to contemporary experience in more developed countries have to deal with issues such as: (1 The development of a run or optimal acceleration enrichment motor for kindergarten children, seen as an important element of the formation of the human personality and its preparation to cope with various situations of life ; (2 The role of infrastructure in the natural development of the personality of children and the educational process as a whole; (3 Parental community involvement as a fundamental prerequisite of real development of the child; (4The qualification level of the teaching staff in the elementary education system and the preparation of students teacher. I hope to add my contribution through this paper, not only by identifying the problems above, but also in presenting alternatives of a development model of kindergarten children motors skills progress, compared to contemporary experience in more developed countries. Keywords: ; ; ; ;

  7. Formation and evolution of target patterns in Cahn-Hilliard flows

    Science.gov (United States)

    Fan, Xiang; Diamond, P. H.; Chacón, L.

    2017-10-01

    We study the evolution of the concentration field in a single eddy in the two-dimensional (2D) Cahn-Hilliard system to better understand scalar mixing processes in that system. This study extends investigations of the classic studies of flux expulsion in 2D magnetohydrodynamics and homogenization of potential vorticity in 2D fluids. Simulation results show that there are three stages in the evolution: (A) formation of a "jelly roll" pattern, for which the concentration field is constant along spirals; (B) a change in isoconcentration contour topology; and (C) formation of a target pattern, for which the isoconcentration contours follow concentric annuli. In the final target pattern stage, the isoconcentration bands align with stream lines. The results indicate that the target pattern is a metastable state. The band merger process continues on a time scale exponentially long relative to the eddy turnover time. The band merger process resembles step merger in drift-ZF staircases; this is characteristic of the long-time evolution of phase-separated patterns described by the Cahn-Hilliard equation.

  8. Consumer in the innovation economy: sociocultural aspects of formation and functioning

    Directory of Open Access Journals (Sweden)

    Nataliya Nikolaevna Malakhova

    2015-01-01

    Full Text Available The functioning of the innovation economy presents the society with a number of social and cultural issues. One of them concerns the formation of an innovative personality, which is regarded by the majority of researchers as a personality open to experiments, innovation and change, a personality that has creative skills and is able not only to create but also to commercialize new scientific and technological developments, that is, a personality capable of producing innovation in the first place. Meanwhile, of equal importance for the functioning of the innovation economy is a personality that is ready to use innovative goods and services; that is why many countries carry out the research into the innovativeness of producers and consumers . The research findings help identify a group of innovator consumers, which is a key group for producers. Analyzing the innovator consumers’ behavior in the market provides an opportunity to define their inherent personal qualities and to formulate their standard of consumption, the main characteristics of which are the absolutization of the value of the new, positive attitude to risk, dominance of the emotional component in consumption to the detriment of the rational component. Modern manufacturers follow the path of modeling and further targeted promotion of consumption standards to ensure stable and predictable demand for their products; therefore, it is logical to assume that the innovators’ consumption standard that meets the interests of innovative products’ manufacturers will be actively promoted in society through the purposeful change of individual and collective psychology. The article forecasts the directions of such change and analyses its possible negative consequences both for society in general and for innovation economy in particular

  9. Evolutionary and developmental aspects of avian-specific traits in limb skeletal pattern.

    Science.gov (United States)

    Seki, Ryohei; Kamiyama, Namiko; Tadokoro, Ayumi; Nomura, Naoki; Tsuihiji, Takanobu; Manabe, Makoto; Tamura, Koji

    2012-10-01

    The two sets of paired appendages, called limbs, are locomotory organs in tetrapods that are used for various functions (e.g., walking, running, crawling, digging, climbing, diving, swimming, and flying). Unlike such organs as the eye, which contain specialized tissues such as the lens and photoreceptor, the limb does not have any specialized cells or tissues, but consists of common tissues, such as bone, cartilage, muscle, blood vessels, and dermis. However, limb morphology is highly specialized and varies to provide species-specific modes of locomotion. As do the vertebrae and skull, the limb skeleton varies in morphology among species. The diversity of limb skeletal morphology provides examples of material for studies on morphogenesis. Avian forelimbs have evolved into wings for flight. The skeletal pattern in the avian limb has many traits that are unique among extant species of vertebrates; some of such traits are avian-specific, others are shared with more basal members of Theropoda, to which Aves belongs. Since such avian traits generally form during ontogenic development, determining when and how they appear in the developing embryonic limbs or limb buds provides important insights into the mechanisms underlying the generation of vertebrate morphological diversity. Here, we present an overview of several features of the skeletal pattern in the avian limb and discuss the developmental mechanisms responsible for their unique and lineage-specific traits.

  10. Formation of personnel corps of engineers in the Urals: sociological aspect

    Directory of Open Access Journals (Sweden)

    Boris Sergeevich Pavlov

    2012-03-01

    Full Text Available In terms of crisis economic development, one of priority goals for the technical institutes of higher education is to train engineers who are competitive on the regional labour markets. The main root of the problem of low prestige of the engineering profession in Russia, the slippage in the personnel training in technical universities lies in the depreciation of engineering work, and reduction of its social and economic attractiveness. The gap between science, education and industry leads to aging of engineering staff at the manufactures and to migration of the most talented engineers into other fields of activity. This paper analyzes current problems of engineers training organization in the Urals. The causes of sharp decline of the engineering profession social status in Russia, the fall of interest of secondary school graduates to continuation of their studies in technical institutes of higher education are reviewed. The authors show that the formation of engineering competence as a defining personal and vocational quality of a specialist involves actualization of the student's motivation, one's active and purposeful adaptation to the educational process, increasing one's responsibility for mastering the curriculum. Conclusions and suggestions of the authors are based on the results of a comprehensive sociological research conducted by them in 2011 in five high schools of the Urals (Yekaterinburg, Nizhnevartovsk and Chelyabinsk. The survey showed that during the stage of young specialists' preparation, cooperation in the «university - enterprise» system is actually shifted to the interaction, in fact, between institute of higher education and young professionals who act as the sellers of their labour. The authors believe that it makes sense to roll over (or rather - to stimulate the active engineering work of the most productive engineering professionals who have reached retirement age. Equally sharp and critical are the issues of

  11. Turing Bifurcation and Pattern Formation of Stochastic Reaction-Diffusion System

    Directory of Open Access Journals (Sweden)

    Qianiqian Zheng

    2017-01-01

    Full Text Available Noise is ubiquitous in a system and can induce some spontaneous pattern formations on a spatially homogeneous domain. In comparison to the Reaction-Diffusion System (RDS, Stochastic Reaction-Diffusion System (SRDS is more complex and it is very difficult to deal with the noise function. In this paper, we have presented a method to solve it and obtained the conditions of how the Turing bifurcation and Hopf bifurcation arise through linear stability analysis of local equilibrium. In addition, we have developed the amplitude equation with a pair of wave vector by using Taylor series expansion, multiscaling, and further expansion in powers of small parameter. Our analysis facilitates finding regions of bifurcations and understanding the pattern formation mechanism of SRDS. Finally, the simulation shows that the analytical results agree with numerical simulation.

  12. Collective Behavior of Chiral Active Matter: Pattern Formation and Enhanced Flocking

    Science.gov (United States)

    Liebchen, Benno; Levis, Demian

    2017-08-01

    We generalize the Vicsek model to describe the collective behavior of polar circle swimmers with local alignment interactions. While the phase transition leading to collective motion in 2D (flocking) occurs at the same interaction to noise ratio as for linear swimmers, as we show, circular motion enhances the polarization in the ordered phase (enhanced flocking) and induces secondary instabilities leading to structure formation. Slow rotations promote macroscopic droplets with late time sizes proportional to the system size (indicating phase separation) whereas fast rotations generate patterns consisting of phase synchronized microflocks with a controllable characteristic size proportional to the average single-particle swimming radius. Our results defy the viewpoint that monofrequent rotations form a vapid extension of the Vicsek model and establish a generic route to pattern formation in chiral active matter with possible applications for understanding and designing rotating microflocks.

  13. Topology regulates pattern formation capacity of binary cellular automata on graphs

    Science.gov (United States)

    Marr, Carsten; Hütt, Marc-Thorsten

    2005-08-01

    We study the effect of topology variation on the dynamic behavior of a system with local update rules. We implement one-dimensional binary cellular automata on graphs with various topologies by formulating two sets of degree-dependent rules, each containing a single parameter. We observe that changes in graph topology induce transitions between different dynamic domains (Wolfram classes) without a formal change in the update rule. Along with topological variations, we study the pattern formation capacities of regular, random, small-world and scale-free graphs. Pattern formation capacity is quantified in terms of two entropy measures, which for standard cellular automata allow a qualitative distinction between the four Wolfram classes. A mean-field model explains the dynamic behavior of random graphs. Implications for our understanding of information transport through complex, network-based systems are discussed.

  14. Drinking pattern and socio-cultural aspects on immune response: an overview.

    Science.gov (United States)

    Romeo, Javier; Wärnberg, Julia; Marcos, Ascensión

    2010-08-01

    Social acceptance of drinking involves social and cultural roles and has important implications for public health. Since extensive evidence indicates that alcohol possesses immunomodulatory properties, scientists have recently debated the influence of alcohol consumption on the immune response, particularly in countries where drinking in a social setting is a part of cultural identity. Experimental and clinical data support the conclusion that alcohol is a potent immunomodulator. While high alcohol consumption suppresses a wide range of immune responses, leading to an increased incidence of a number of infectious diseases, moderate alcohol consumption may have a beneficial impact on the immune system, compared to alcohol abuse or abstinence, most likely due to the multiple components of polyphenol-rich alcoholic contributing to the protective effect seen for moderate alcohol consumption on CVD and the immune system. Despite this, the scientific literature appears to be concerned about the diseases associated with excessive drinking in some societies and cultures. Thus, the present review recognizes the importance to consider social and cultural aspects of drinking when examining the whole dimension of alcohol consumption (amount, beverage type, frequency and variability), in order to estimate global risk of consequences on host defence to better understand alcohol-related harm or benefit.

  15. Determination of density pattern of fracture in Asmari Formation in Marun oilfield

    OpenAIRE

    Mehdi Khoshnodkia; Heidar Basiri; Hassan Amiri Bakhtiar; Kheyrollah Noraeinezhad

    2015-01-01

    Marun oilfield is located in the middle part of Dezful Embayment and is situated along the Aghajari, Ahvaz and Ramin anticline. Given the important role of fracture characteristics for improving production, so the aim of this research is to investigate the density pattern of fracture in Asmari formation in Marun oilfield. For this purpose, results of image log, core data, graphic well log, methods of inscribed circle analysis and curvature changes geometry of anticline were analyzed. Asmari f...

  16. Nonmonotonic Pattern Formation in Three Species Lotka-Volterra System with Colored Noise

    OpenAIRE

    Fiasconaro, A.; Valenti, D.; Spagnolo, B.

    2005-01-01

    A coupled map lattice of generalized Lotka-Volterra equations in the presence of colored multiplicative noise is used to analyze the spatiotemporal evolution of three interacting species: one predator and two preys symmetrically competing each other. The correlation of the species concentration over the grid as a function of time and of the noise intensity is investigated. The presence of noise induces pattern formation, whose dimensions show a nonmonotonic behavior as a function of the noise...

  17. Topology regulates pattern formation capacity of binary cellular automata on graphs

    OpenAIRE

    Marr, Carsten; Huett, Marc-Thorsten

    2005-01-01

    We study the effect of topology variation on the dynamic behavior of a system with local update rules. We implement one-dimensional binary cellular automata on graphs with various topologies by formulating two sets of degree-dependent rules, each containing a single parameter. We observe that changes in graph topology induce transitions between different dynamic domains (Wolfram classes) without a formal change in the update rule. Along with topological variations, we study the pattern format...

  18. Antibiotic Resistance Pattern and Biofilm Formation Ability of Clinically Isolates of Salmonella enterica Serotype typhimurium

    Directory of Open Access Journals (Sweden)

    Hadi Ghasemmahdi

    2015-05-01

    Full Text Available Background: The emergence of antimicrobial-resistant bacteria with biofilm formation ability may be a major threat to public health and food safety and sanitation. Objectives: The aim of this study was to determine antibiotic resistance patterns and biofilm production characteristics of Salmonella typhimurium isolated from different species of birds. Materials and Methods: The antibiotic resistance patterns of 38 pre-identified isolates were screened by standard Kirby-Bauer disc-diffusion method performed on Mueller–Hinton agar to a panel of 17 antibiotics. The extent of biofilm formation was measured by Microtiter plate (MTP-based systems. Results: The highest antimicrobial resistance was detected against nalidixic acid (97%, followed by doxycycline (86%, colistin (84%, streptomycin (84% and tetracycline (84%. All isolates were sensitive to amikacin (100% and 97% and 95% of the isolates were sensitive to ceftazidime and ceftriaxone, respectively. Twenty one different antibiotic resistance patterns were observed among S. typhimurium isolates. According to the results of the microtitre plate biofilm assay, there was a wide variation in biofilm forming ability among S. typhimurium isolates. Most of the isolates (60.52% were not capable of producing biofilm, while 26.31%, 7.89%, and 5.26% isolates were weak, strong and moderate biofilm producers, respectively. Conclusions: It was concluded that nearly all S. typhimurium isolates revealed a high multiple antibiotic resistant with low biofilm forming capabilities which proposed low association between biofilm formation and antibiotic resistance of a major food important pathogen.

  19. Density of founder cells affects spatial pattern formation and cooperation in Bacillus subtilis biofilms

    Science.gov (United States)

    van Gestel, Jordi; Weissing, Franz J; Kuipers, Oscar P; Kovács, Ákos T

    2014-01-01

    In nature, most bacteria live in surface-attached sedentary communities known as biofilms. Biofilms are often studied with respect to bacterial interactions. Many cells inhabiting biofilms are assumed to express ‘cooperative traits', like the secretion of extracellular polysaccharides (EPS). These traits can enhance biofilm-related properties, such as stress resilience or colony expansion, while being costly to the cells that express them. In well-mixed populations cooperation is difficult to achieve, because non-cooperative individuals can reap the benefits of cooperation without having to pay the costs. The physical process of biofilm growth can, however, result in the spatial segregation of cooperative from non-cooperative individuals. This segregation can prevent non-cooperative cells from exploiting cooperative neighbors. Here we examine the interaction between spatial pattern formation and cooperation in Bacillus subtilis biofilms. We show, experimentally and by mathematical modeling, that the density of cells at the onset of biofilm growth affects pattern formation during biofilm growth. At low initial cell densities, co-cultured strains strongly segregate in space, whereas spatial segregation does not occur at high initial cell densities. As a consequence, EPS-producing cells have a competitive advantage over non-cooperative mutants when biofilms are initiated at a low density of founder cells, whereas EPS-deficient cells have an advantage at high cell densities. These results underline the importance of spatial pattern formation for competition among bacterial strains and the evolution of microbial cooperation. PMID:24694715

  20. Coarsening and pattern formation during true morphological phase separation in unstable thin films under gravity

    Science.gov (United States)

    Kumar, Avanish; Narayanam, Chaitanya; Khanna, Rajesh; Puri, Sanjay

    2017-12-01

    We address in detail the problem of true morphological phase separation (MPS) in three-dimensional or (2 +1 )-dimensional unstable thin liquid films (>100 nm) under the influence of gravity. The free-energy functionals of these films are asymmetric and show two points of common tangency, which facilitates the formation of two equilibrium phases. Three distinct patterns formed by relative preponderance of these phases are clearly identified in "true MPS". Asymmetricity induces two different pathways of pattern formation, viz., defect and direct pathway for true MPS. The pattern formation and phase-ordering dynamics have been studied using statistical measures such as structure factor, correlation function, and growth laws. In the late stage of coarsening, the system reaches into a scaling regime for both pathways, and the characteristic domain size follows the Lifshitz-Slyozov growth law [L (t ) ˜t1 /3] . However, for the defect pathway, there is a crossover of domain growth behavior from L (t ) ˜t1 /4→t1 /3 in the dynamical scaling regime. We also underline the analogies and differences behind the mechanisms of MPS and true MPS in thin liquid films and generic spinodal phase separation in binary mixtures.

  1. Self-Assembly, Pattern Formation and Growth Phenomena in Nano-Systems

    CERN Document Server

    Nepomnyashchy, Alexander A

    2006-01-01

    Nano-science and nano-technology are rapidly developing scientific and technological areas that deal with physical, chemical and biological processes that occur on nano-meter scale – one millionth of a millimeter. Self-organization and pattern formation play crucial role on nano-scales and promise new, effective routes to control various nano-scales processes. This book contains lecture notes written by the lecturers of the NATO Advanced Study Institute "Self-Assembly, Pattern Formation and Growth Phenomena in Nano-Systems" that took place in St Etienne de Tinee, France, in the fall 2004. They give examples of self-organization phenomena on micro- and nano-scale as well as examples of the interplay between phenomena on nano- and macro-scales leading to complex behavior in various physical, chemical and biological systems. They discuss such fascinating nano-scale self-organization phenomena as self-assembly of quantum dots in thin solid films, pattern formation in liquid crystals caused by light, self-organi...

  2. Ultra-high aspect ratio poly-Si FinFET using an improved spacer formation technique

    Science.gov (United States)

    Liu, Libin; Liang, Renrong; Wang, Jing; Xu, Jun

    2017-04-01

    An improved spacer formation technique was proposed and developed to fabricate poly-Si fin field-effect transistors (FinFETs) with an ultra-high aspect ratio. The as-demonstrated FinFETs have a fin channel with a width and height of 22 nm and 230 nm, respectively, corresponding to an aspect ratio of 10.5. The electrical and temperature properties of the FinFETs are described in detail in this paper. The poly-Si FinFETs exhibit a steep subthreshold swing (196 mV/dec), a low leakage current (∼10-14 A), a high on/off current ratio (2.2 × 107 at VDS = 0.1 V), and a low drain-induced barrier lowering effect (0.28 V). The excellent switching characteristics are attributed to the ultrathin channel body and the multi-gate structure combined with high-k Al2O3 dielectric. Furthermore, the electron field-effective mobility increases as the temperature increases. An analytical fitting model was derived and was utilized to account for this phenomenon. The fitting results indicate that the positive temperature coefficient originates from the grain boundary-controlled mechanism in the low gate voltage regime.

  3. Temporal patterns of ant diversity across a mountain with climatically contrasting aspects in the tropics of Africa.

    Directory of Open Access Journals (Sweden)

    Thinandavha Caswell Munyai

    Full Text Available Factors that drive species richness over space and time are still poorly understood and are often context specific. Identifying these drivers for ant diversity has become particularly relevant within the context of contemporary global change events. We report on a long-term bi-annual (wet and dry seasons, standardized sampling of epigeal ants over a five year period on the mesic and arid aspects of an inselberg (Soutpansberg Mountain Range in the tropics of Africa. We detail seasonal, annual and long-term trends of species density, test the relative contribution of geometric constraints, energy, available area, climate, local environmental variables, time, and space in explaining ant species density patterns through Generalized Linear Mixed Models (GLMM where replicates were included as random factors to account for temporal pseudo-replication. Seasonal patterns were very variable and we found evidence of decreased seasonal variation in species density with increased elevation. The extent and significance of a decrease in species density with increased elevation varied with season. Annual patterns point to an increase in ant diversity over time. Ant density patterns were positively correlated with mean monthly temperature but geometric constraints dominated model performance while soil characteristics were minor correlates. These drivers and correlates accounted for all the spatio-temporal variability in the database. Ant diversity was therefore mainly determined by geometric constraints and temperature while soil characteristics (clay and carbon content accounted for smaller but significant amounts of variation. This study documents the role of season, elevation and their interaction in affecting ant species densities while highlighting the importance of neutral processes and temperature in driving these patterns.

  4. Temporal patterns of ant diversity across a mountain with climatically contrasting aspects in the tropics of Africa.

    Science.gov (United States)

    Munyai, Thinandavha Caswell; Foord, Stefan Hendrik

    2015-01-01

    Factors that drive species richness over space and time are still poorly understood and are often context specific. Identifying these drivers for ant diversity has become particularly relevant within the context of contemporary global change events. We report on a long-term bi-annual (wet and dry seasons), standardized sampling of epigeal ants over a five year period on the mesic and arid aspects of an inselberg (Soutpansberg Mountain Range) in the tropics of Africa. We detail seasonal, annual and long-term trends of species density, test the relative contribution of geometric constraints, energy, available area, climate, local environmental variables, time, and space in explaining ant species density patterns through Generalized Linear Mixed Models (GLMM) where replicates were included as random factors to account for temporal pseudo-replication. Seasonal patterns were very variable and we found evidence of decreased seasonal variation in species density with increased elevation. The extent and significance of a decrease in species density with increased elevation varied with season. Annual patterns point to an increase in ant diversity over time. Ant density patterns were positively correlated with mean monthly temperature but geometric constraints dominated model performance while soil characteristics were minor correlates. These drivers and correlates accounted for all the spatio-temporal variability in the database. Ant diversity was therefore mainly determined by geometric constraints and temperature while soil characteristics (clay and carbon content) accounted for smaller but significant amounts of variation. This study documents the role of season, elevation and their interaction in affecting ant species densities while highlighting the importance of neutral processes and temperature in driving these patterns.

  5. Crossover between Spatially Confined Precipitation and Periodic Pattern Formation in Reaction Diffusion Systems

    Science.gov (United States)

    López Cabarcos, E.; Kuo, Chein-Shiu; Scala, A.; Bansil, R.

    1996-09-01

    We have observed a crossover between a spatially confined precipitation regime and periodic pattern formation regime. This unusual behavior was observed when electrolyte solutions of Na2HPO4 and CaCl2 were allowed to diffuse into an agarose gel from opposite ends. The formation of the confined precipitate occurs when the electrolyte flux J is the same at both sides of the gel. The time of formation and the width of the precipitate are a function of J and both follow the scaling relation ω~\\(J/D\\)-β with β = 0.40+/-0.2 and D the diffusion coefficient. The growth of periodic bands of precipitate was observed when J was different at both gel ends.

  6. An Integrative Approach for Modeling and Simulation of Heterocyst Pattern Formation in Cyanobacteria Filaments

    Science.gov (United States)

    Torres-Sánchez, Alejandro; Gómez-Gardeñes, Jesús; Falo, Fernando

    2015-01-01

    Heterocyst differentiation in cyanobacteria filaments is one of the simplest examples of cellular differentiation and pattern formation in multicellular organisms. Despite of the many experimental studies addressing the evolution and sustainment of heterocyst patterns and the knowledge of the genetic circuit underlying the behavior of single cyanobacterium under nitrogen deprivation, there is still a theoretical gap connecting these two macroscopic and microscopic processes. As an attempt to shed light on this issue, here we explore heterocyst differentiation under the paradigm of systems biology. This framework allows us to formulate the essential dynamical ingredients of the genetic circuit of a single cyanobacterium into a set of differential equations describing the time evolution of the concentrations of the relevant molecular products. As a result, we are able to study the behavior of a single cyanobacterium under different external conditions, emulating nitrogen deprivation, and simulate the dynamics of cyanobacteria filaments by coupling their respective genetic circuits via molecular diffusion. These two ingredients allow us to understand the principles by which heterocyst patterns can be generated and sustained. In particular, our results point out that, by including both diffusion and noisy external conditions in the computational model, it is possible to reproduce the main features of the formation and sustainment of heterocyst patterns in cyanobacteria filaments as observed experimentally. Finally, we discuss the validity and possible improvements of the model. PMID:25816286

  7. Stress-driven pattern formation in living and non-living matter

    DEFF Research Database (Denmark)

    Christensen, Amalie

    Spatial pattern formation is abundant in nature and occurs in both living and non-living matter. Familiar examples include sand ripples, river deltas, zebra fur and snail shells. In this thesis, we focus on patterns induced by mechanical stress, and develop continuum theories for three systems...... and cooling conditions. On the scale of micrometers, we model breast cancer tissue as a viscoelastic active fluid. The model captures experimentally observed statistical characteristics as well as the cell division process, and hints at substrate friction being important for cell speed distributions....... On the smallest scale of nanometers, we study thin films of block copolymers, which have potential applications as self-organizing templates for microelectronics. By performing a thin-shell expansion of a well-known model for block copolymers, we develop an effective model for the impact of curvature on pattern...

  8. Sagittal and vertical aspects of Class II division 1 subjects according to the respiratory pattern

    Directory of Open Access Journals (Sweden)

    Laura de Castro Cabrera

    2013-04-01

    Full Text Available INTRODUCTION: The teeth position, specially maxillary and mandibular incisors, in relation to basal bone and surrounding soft tissues must be considered in the elaboration of diagnosis, treatment planning and execution to obtain alignment, leveling, intercuspation, facial balance and harmony with stability of results. OBJECTIVES: To evaluate the modifications in the positioning of incisors in individuals with Angle Class II, division 1 malocclusion in two distinct moments of dentocraniofacial development, with mean interval of 2 years and 5 months. METHODS: The measures were obtained by means of lateral cephalograms of 40 individuals, being 23 nasal breathers (NB and 17 mouth breathers (MB. The analyzed measures were overjet, overbite, UCI-NA, LCI-NB, UCI.NA, LCI.NB, UCI.SN, LCI.GoGn, UCI.LCI, ANB, GoGn.SN, and OccPl.SN. Statistical analysis (2-way repeated-measures ANOVA was applied to verify intergroups differences. RESULTS: Overjet, UCI-NA, LCI-NB, ANB, GoGn.SN, and OccPl.SN demonstrated statistically significant difference (p < 0.05 when observed the moment or the respiratory method. CONCLUSION: There is alteration in the positioning of incisors during growth with interference of the respiratory pattern.

  9. Sagittal and vertical aspects of Class II division 1 subjects according to the respiratory pattern.

    Science.gov (United States)

    Cabrera, Laura de Castro; Retamoso, Luciana Borges; Mei, Raul Magnoler Sampaio; Tanaka, Orlando

    2013-01-01

    The teeth position, specially maxillary and mandibular incisors, in relation to basal bone and surrounding soft tissues must be considered in the elaboration of diagnosis, treatment planning and execution to obtain alignment, leveling, intercuspation, facial balance and harmony with stability of results. To evaluate the modifications in the positioning of incisors in individuals with Angle Class II, division 1 malocclusion in two distinct moments of dentocraniofacial development, with mean interval of 2 years and 5 months. The measures were obtained by means of lateral cephalograms of 40 individuals, being 23 nasal breathers (NB) and 17 mouth breathers (MB). The analyzed measures were overjet, overbite, UCI-NA, LCI-NB, UCI.NA, LCI.NB, UCI.SN, LCI.GoGn, UCI.LCI, ANB, GoGn.SN, and OccPl.SN. Statistical analysis (2-way repeated-measures ANOVA) was applied to verify intergroups differences. Overjet, UCI-NA, LCI-NB, ANB, GoGn.SN, and OccPl.SN demonstrated statistically significant difference (p < 0.05) when observed the moment or the respiratory method. There is alteration in the positioning of incisors during growth with interference of the respiratory pattern.

  10. Dynamics of fast pattern formation in porous silicon by laser interference

    Energy Technology Data Exchange (ETDEWEB)

    Peláez, Ramón J.; Kuhn, Timo; Afonso, Carmen N. [Laser Processing Group, Instituto de Óptica, CSIC, Serrano 121, 28006 Madrid (Spain); Vega, Fidel [Departament d' Òptica i Optometria, UPC, Violinista Vellsolà 37, 08222 Terrasa (Spain)

    2014-10-20

    Patterns are fabricated on 290 nm thick nanostructured porous silicon layers by phase-mask laser interference using single pulses of an excimer laser (193 nm, 20 ns pulse duration). The dynamics of pattern formation is studied by measuring in real time the intensity of the diffraction orders 0 and 1 at 633 nm. The results show that a transient pattern is formed upon melting at intensity maxima sites within a time <30 ns leading to a permanent pattern in a time <100 ns upon solidification at these sites. This fast process is compared to the longer one (>1 μs) upon melting induced by homogeneous beam exposure and related to the different scenario for releasing the heat from hot regions. The diffraction efficiency of the pattern is finally controlled by a combination of laser fluence and initial thickness of the nanostructured porous silicon layer and the present results open perspectives on heat release management upon laser exposure as well as have potential for alternative routes for switching applications.

  11. How the Propagation of Heat-Flux Modulations Triggers E × B Flow Pattern Formation

    Science.gov (United States)

    Kosuga, Yusuke

    2013-10-01

    Recently, a new class of E × B flow pattern, called an `` E × B staircase,'' was observed in a simulation study using the full- f flux driven GYSELA code. Here, E × B staircases are quasi-regular steady patterns of localized shear layers and temperature profile corrugations. The shear layers are interspaced between regions of turbulent avalanching of the size of several correlation length (~ 10Δc). In this work, a theory to describe the formation of such E × B staircases from a bath of stochastic avalanches is presented, based on analogy of staircase formation to jam formation in traffic flow. Namely, staircase formation is viewed as a heat flux ``jam'' that causes profile corrugation, which is analogous to a traffic jam that causes corrugations in the local car density in a traffic flow. To model such an effect in plasmas, a finite response time τ is introduced, during which instantaneous heat flux relaxes to the mean heat flux, determined by symmetry constraints. The response time introduced here is an analogue of drivers' response time in traffic flow dynamics. It is shown that the extended model describes a heat flux ``jam'' and profile corrugation, which appears as an instability, in analogy to the way a clustering instability leads to a traffic jam. Such local amplification of heat and profile corrugations can lead to the formation of E × B staircases. The scale length that gives the maximum growth rate falls in the mesoscale range and is comparable to the staircase step spacing. Present address: IAS and RIAM, Kyushu University, Japan.

  12. Modeling Elevation and Aspect Controls on Emerging Ecohydrologic Processes and Ecosystem Patterns Using the Component-based Landlab Framework

    Science.gov (United States)

    Nudurupati, S. S.; Istanbulluoglu, E.; Adams, J. M.; Hobley, D. E. J.; Gasparini, N. M.; Tucker, G. E.; Hutton, E. W. H.

    2014-12-01

    Topography plays a commanding role on the organization of ecohydrologic processes and resulting vegetation patterns. In southwestern United States, climate conditions lead to terrain aspect- and elevation-controlled ecosystems, with mesic north-facing and xeric south-facing vegetation types; and changes in biodiversity as a function of elevation from shrublands in low desert elevations, to mixed grass/shrublands in mid elevations, and forests at high elevations and ridge tops. These observed patterns have been attributed to differences in topography-mediated local soil moisture availability, micro-climatology, and life history processes of plants that control chances of plant establishment and survival. While ecohydrologic models represent local vegetation dynamics in sufficient detail up to sub-hourly time scales, plant life history and competition for space and resources has not been adequately represented in models. In this study we develop an ecohydrologic cellular automata model within the Landlab component-based modeling framework. This model couples local vegetation dynamics (biomass production, death) and plant establishment and competition processes for resources and space. This model is used to study the vegetation organization in a semiarid New Mexico catchment where elevation and hillslope aspect play a defining role on plant types. Processes that lead to observed plant types across the landscape are examined by initializing the domain with randomly assigned plant types and systematically changing model parameters that couple plant response with soil moisture dynamics. Climate perturbation experiments are conducted to examine the plant response in space and time. Understanding the inherently transient ecohydrologic systems is critical to improve predictions of climate change impacts on ecosystems.

  13. Formation and laser patterning of perovskite-type KNbO3 crystals in aluminoborate glasses

    Science.gov (United States)

    Kioka, K.; Honma, T.; Komatsu, T.

    2011-01-01

    Perovskite-type nonlinear optical KNbO3 (KN) crystals are synthesized from 40K2O-25Nb2O5-35B2O3 (KNB) and 40K2O-25Nb2O5-25B2O3-10Al2O3 (KNBA) (mol%) glasses by using a conventional glass-ceramics method. It is found from X-ray diffraction analyses and Raman scattering spectrum measurements that the addition of Al2O3 to glass is effective for the formation of perovskite-type KN crystals. A continuous wave Yb:YVO4 fiber laser (wavelength: 1080 nm) is irradiated onto the surface of CuO-doped (2 mol%) KNB and KNBA glasses, and in particular, perovskite-type KN crystals are patterned in the condition of the laser power of 0.9 W and laser scanning speed of 8 μm/s for KNBA glass containing Al2O3. The formation of metastable (not perovskite-type) KN crystals is also confirmed in the samples crystallized in an electric furnace and in laser-patterned lines. The formation behavior of KN crystals in the glasses is discussed from the point of view of glass composition.

  14. Ordered nano-scale dimple pattern formation on a titanium alloy (Ti-6Al-4V

    Directory of Open Access Journals (Sweden)

    Yue Wang

    2012-09-01

    Full Text Available Due to the many applications of nanostructured surfaces – including in biomaterials – there is a strong interest in cost- and time-efficient methods for their fabrication. Previously, our group established a simple electrochemical method generating nanoscale patterns on large areas of a number of different metal surfaces. They consist of dimples that are around 6-10 nm deep and hexagonally closed packed with a tunable periodicity of around 50 nm. Ordering requires careful tuning of the surface chemistry, which makes the translation of these findings to multi-component alloys non-obvious. Here, we demonstrate for the first time that such a pattern can also be achieved on the surface of an alloy, namely Ti-6Al-4V. This alloy is of particular interest for biomedical implants. While dimple formation on the main component metals titanium and aluminum has previously been reported (albeit under conditions that differ from each other, we now also report dimple formation on pure vanadium surfaces to occur under very different conditions. Dimple formation occurs preferentially on the (dominant α-phase grains of the alloy. The size of dimples of the alloy material is subject to the electropolishing potential, electrolyte concentration and surface chemical composition, which gives us the opportunity to control the surface features. Since a main application of this alloy are biomedical implants, this level of control will be an important tool for accommodating cell growth.

  15. Formation of mixed and patterned self-assembled films of alkylphosphonates on commercially pure titanium surfaces

    Energy Technology Data Exchange (ETDEWEB)

    Rudzka, Katarzyna; Sanchez Treviño, Alda Y.; Rodríguez-Valverde, Miguel A., E-mail: marodri@ugr.es; Cabrerizo-Vílchez, Miguel A.

    2016-12-15

    Highlights: • Chemically-tailored titanium surfaces were prepared by self-assembly of alkylphosphonates. • Mixed self-assembled films were prepared with aqueous mixtures of two alkylphosphonates. • Single self-assembled films were altered by laser abrasion. • Mixed and patterned self-assembled films on titanium may guide the bone-like formation. - Abstract: Titanium is extensively employed in biomedical devices, in particular as implant. The self-assembly of alkylphosphonates on titanium surfaces enable the specific adsorption of biomolecules to adapt the implant response against external stimuli. In this work, chemically-tailored cpTi surfaces were prepared by self-assembly of alkylphosphonate molecules. By bringing together attributes of two grafting molecules, aqueous mixtures of two alkylphosphonates were used to obtain mixed self-assembled films. Single self-assembled films were also altered by laser abrasion to produce chemically patterned cpTi surfaces. Both mixed and patterned self-assembled films were confirmed by AFM, ESEM and X-ray photoelectron spectroscopy. Water contact angle measurements also revealed the composition of the self-assembly films. Chemical functionalization with two grafting phosphonate molecules and laser surface engineering may be combined to guide the bone-like formation on cpTi, and the future biological response in the host.

  16. Structure and formation of the twisted plywood pattern of collagen fibrils in rat lamellar bone.

    Science.gov (United States)

    Yamamoto, Tsuneyuki; Hasegawa, Tomoka; Sasaki, Muneteru; Hongo, Hiromi; Tabata, Chihiro; Liu, Zhusheng; Li, Minqi; Amizuka, Norio

    2012-04-01

    This study was designed to elucidate details of the structure and formation process of the alternate lamellar pattern known to exist in lamellar bone. For this purpose, we examined basic internal lamellae in femurs of young rats by transmission and scanning electron microscopy, the latter employing two different macerations with NaOH at concentrations of 10 and 24%. Observations after the maceration with 10% NaOH showed that the regular and periodic rotation of collagen fibrils caused an alternation between two types of lamellae: one consisting of transversely and nearly transversely cut fibrils, and the other consisting of longitudinally and nearly longitudinally cut fibrils. This finding confirms the consistency of the twisted plywood model. The maceration method with 24% NaOH removed bone components other than cells, thus allowing for three-dimensional observations of osteoblast morphology. Osteoblasts extended finger-like processes paralleling the inner bone surface, and grouped in such a way that, within a group, the processes arranged in a similar direction. Transmission electron microscopy showed that newly deposited fibrils were arranged alongside these processes. For the formation of the alternating pattern, our findings suggest that: (1) osteoblasts control the collagen fibril arrangement through their finger-like process position; (2) osteoblasts behave similarly within a group; (3) osteoblasts move their processes synchronously and periodically to promote alternating different fibril orientation; and (4) this dynamic sequential deposition of fibrils results in the alternate lamellar (or twisted plywood) pattern.

  17. Clastic patterned ground in Lomonosov crater, Mars: examining fracture controlled formation mechanisms

    Science.gov (United States)

    Barrett, Alexander M.; Balme, Matthew R.; Patel, Manish R.; Hagermann, Axel

    2017-10-01

    The area surrounding Lomonosov crater on Mars has a high density of seemingly organised boulder patterns. These form seemingly sorted polygons and stripes within kilometre scale blockfields, patches of boulder strewn ground which are common across the Martian high latitudes. Several hypotheses have been suggested to explain the formation of clastic patterned ground on Mars. It has been proposed that these structures could have formed through freeze-thaw sorting, or conversely by the interaction of boulders with underlying fracture polygons. In this investigation a series of sites were examined to evaluate whether boulder patterns appear to be controlled by the distribution of underlying fractures and test the fracture control hypotheses for their formation. It was decided to focus on this suite of mechanisms as they are characterised by a clear morphological relationship, namely the presence of an underlying fracture network which can easily be evaluated over a large area. It was found that in the majority of examples at these sites did not exhibit fracture control. Although fractures were present at many sites there were very few sites where the fracture network appeared to be controlling the boulder distribution. In general these were not the sites with the best examples of organization, suggesting that the fracture control mechanisms are not the dominant geomorphic process organising the boulders in this area.

  18. Disappearing scales in carps: Re-visiting Kirpichnikov's model on the genetics of scale pattern formation

    KAUST Repository

    Casas, Laura

    2013-12-30

    The body of most fishes is fully covered by scales that typically form tight, partially overlapping rows. While some of the genes controlling the formation and growth of fish scales have been studied, very little is known about the genetic mechanisms regulating scale pattern formation. Although the existence of two genes with two pairs of alleles (S&s and N&n) regulating scale coverage in cyprinids has been predicted by Kirpichnikov and colleagues nearly eighty years ago, their identity was unknown until recently. In 2009, the \\'S\\' gene was found to be a paralog of fibroblast growth factor receptor 1, fgfr1a1, while the second gene called \\'N\\' has not yet been identified. We re-visited the original model of Kirpichnikov that proposed four major scale pattern types and observed a high degree of variation within the so-called scattered phenotype due to which this group was divided into two sub-types: classical mirror and irregular. We also analyzed the survival rates of offspring groups and found a distinct difference between Asian and European crosses. Whereas nude x nude crosses involving at least one parent of Asian origin or hybrid with Asian parent(s) showed the 25% early lethality predicted by Kirpichnikov (due to the lethality of the NN genotype), those with two Hungarian nude parents did not. We further extended Kirpichnikov\\'s work by correlating changes in phenotype (scale-pattern) to the deformations of fins and losses of pharyngeal teeth. We observed phenotypic changes which were not restricted to nudes, as described by Kirpichnikov, but were also present in mirrors (and presumably in linears as well; not analyzed in detail here). We propose that the gradation of phenotypes observed within the scattered group is caused by a gradually decreasing level of signaling (a dosedependent effect) probably due to a concerted action of multiple pathways involved in scale formation. 2013 Casas et al.

  19. Disappearing scales in carps: re-visiting Kirpichnikov's model on the genetics of scale pattern formation.

    Directory of Open Access Journals (Sweden)

    Laura Casas

    Full Text Available The body of most fishes is fully covered by scales that typically form tight, partially overlapping rows. While some of the genes controlling the formation and growth of fish scales have been studied, very little is known about the genetic mechanisms regulating scale pattern formation. Although the existence of two genes with two pairs of alleles (S&s and N&n regulating scale coverage in cyprinids has been predicted by Kirpichnikov and colleagues nearly eighty years ago, their identity was unknown until recently. In 2009, the 'S' gene was found to be a paralog of fibroblast growth factor receptor 1, fgfr1a1, while the second gene called 'N' has not yet been identified. We re-visited the original model of Kirpichnikov that proposed four major scale pattern types and observed a high degree of variation within the so-called scattered phenotype due to which this group was divided into two sub-types: classical mirror and irregular. We also analyzed the survival rates of offspring groups and found a distinct difference between Asian and European crosses. Whereas nude × nude crosses involving at least one parent of Asian origin or hybrid with Asian parent(s showed the 25% early lethality predicted by Kirpichnikov (due to the lethality of the NN genotype, those with two Hungarian nude parents did not. We further extended Kirpichnikov's work by correlating changes in phenotype (scale-pattern to the deformations of fins and losses of pharyngeal teeth. We observed phenotypic changes which were not restricted to nudes, as described by Kirpichnikov, but were also present in mirrors (and presumably in linears as well; not analyzed in detail here. We propose that the gradation of phenotypes observed within the scattered group is caused by a gradually decreasing level of signaling (a dose-dependent effect probably due to a concerted action of multiple pathways involved in scale formation.

  20. Pattern formation in polymerising actin flocks: spirals, spots and waves without nonlinear chemistry

    CERN Document Server

    Goff, Thomas Le; Marenduzzo, Davide

    2016-01-01

    We propose a model solely based on actin treadmilling and polymerisation which describes many characteristic states of actin wave formation: spots, spirals and travelling waves. In our model, as in experiments on cell recovering motility following actin depolymerisation, we choose an isotropic low density initial condition; polymerisation of actin filaments then raises the density towards the Onsager threshold where they align. We show that this alignment, in turn, destabilizes the isotropic phase and generically induces transient actin spots or spirals as part of the dynamical pathway towards a polarized phase which can either be uniform or consist of a series of actin-wave trains (flocks). Our results uncover a universal route to actin wave formation in the absence of any system specific nonlinear biochemistry, and it may help understand the mechanism underlying the observation of actin spots and waves in vivo. They also suggest a minimal setup to design similar patterns in vitro.

  1. E × B shear pattern formation by radial propagation of heat flux wavesa)

    Science.gov (United States)

    Kosuga, Y.; Diamond, P. H.; Dif-Pradalier, G.; Gürcan, Ã.-. D.

    2014-05-01

    A novel theory to describe the formation of E ×B flow patterns by radially propagating heat flux waves is presented. A model for heat avalanche dynamics is extended to include a finite delay time between the instantaneous heat flux and the mean flux, based on an analogy between heat avalanche dynamics and traffic flow dynamics. The response time introduced here is an analogue of the drivers' response time in traffic dynamics. The microscopic foundation for the time delay is the time for mixing of the phase space density. The inclusion of the finite response time changes the model equation for avalanche dynamics from Burgers equation to a nonlinear telegraph equation. Based on the telegraph equation, the formation of heat flux jams is predicted. The growth rate and typical interval of jams are calculated. The connection of the jam interval to the typical step size of the E ×B staircase is discussed.

  2. DSA patterning options for FinFET formation at 7nm node

    Science.gov (United States)

    Liu, Chi-Chun C.; Franke, Elliott; Lie, Fee Li; Sieg, Stuart; Tsai, Hsinyu; Lai, Kafai; Truong, Hoa; Farrell, Richard; Somervell, Mark; Sanders, Daniel; Felix, Nelson; Guillorn, Michael; Burns, Sean; Hetzer, David; Ko, Akiteru; Arnold, John; Colburn, Matthew

    2016-03-01

    Several 27nm-pitch directed self-assembly (DSA) processes targeting fin formation for FinFET device fabrication are studied in a 300mm pilot line environment, including chemoepitaxy for a conventional Fin arrays, graphoepitaxy for a customization approach and a hybrid approach for self-aligned Fin cut. The trade-off between each DSA flow is discussed in terms of placement error, Fin CD/profile uniformity, and restricted design. Challenges in pattern transfer are observed and process optimization are discussed. Finally, silicon Fins with 100nm depth and on-target CD using different DSA options with either lithographic or self-aligned customization approach are demonstrated.

  3. Movement of the cambial domain pattern and mechanism of formation of interlocked grain in Platanus

    Directory of Open Access Journals (Sweden)

    J. Krawczyszyn

    2015-01-01

    Full Text Available The orientation of splitting and uniting of rays, which served as an indicator of the orientation of morphogenic events occurring in cambium, was determined on series of veneers covering large tangential faces of Platanus trunks. It has been shown that cambium consists of orientational domains of Z- and S-type. They are perpendicular to, or slightly inclined with respect to, the trunk axis. Axial dimensions of domains are 8-28 cm. They move upward along the trunk, at a rate 6,5—12 mm, per radial mm of xylem porduced. Migration domain patterns are responsible for the formation of the interlocked grain.

  4. Selective formation of diamond-like carbon coating by surface catalyst patterning

    DEFF Research Database (Denmark)

    Palnichenko, A.V.; Mátéfi-Tempfli, M.; Mátéfi-Tempfli, Stefan

    2004-01-01

    The selective formation of diamond-like carbon coating by surface catalyst patterning was studied. DLC films was deposited using plasma enhanced chemical vapor deposition, filtered vacuum arc deposition, laser ablation, magnetron sputtering and ion-beam lithography methods. The DLC coatings were...... obtained by means of a single short and intensive carbon plasma deposition pulse. The deposited DLC coating was characterized by micro-Raman spectroscopy measurements. The DLC coating process gave rise to wide potential possibilities in micro-devices manufacturing productions....

  5. Zonal Flow as Pattern Formation: Merging Jets and the Ultimate Jet Length Scale

    Energy Technology Data Exchange (ETDEWEB)

    Jeffrey B. Parker and John A. Krommes

    2013-01-30

    Zonal flows are well known to arise spontaneously out of turbulence. It is shown that for statisti- cally averaged equations of quasigeostrophic turbulence on a beta plane, zonal flows and inhomoge- neous turbulence fit into the framework of pattern formation. There are many implications. First, the zonal flow wavelength is not unique. Indeed, in an idealized, infinite system, any wavelength within a certain continuous band corresponds to a solution. Second, of these wavelengths, only those within a smaller subband are linearly stable. Unstable wavelengths must evolve to reach a stable wavelength; this process manifests as merging jets.

  6. Embryonic requirements for ErbB signaling in neural crest development and adult pigment pattern formation

    Science.gov (United States)

    Budi, Erine H.; Patterson, Larissa B.; Parichy, David M.

    2009-01-01

    SUMMARY Vertebrate pigment cells are derived from neural crest cells and are a useful system for studying neural crest-derived traits during post-embryonic development. In zebrafish, neural crest-derived melanophores differentiate during embryogenesis to produce stripes in the early larva. Dramatic changes to the pigment pattern occur subsequently during the larva-to-adult transformation, or metamorphosis. At this time, embryonic melanophores are replaced by newly differentiating metamorphic melanophores that form the adult stripes. Mutants with normal embryonic/early larval pigment patterns but defective adult patterns identify factors required uniquely to establish, maintain, or recruit the latent precursors to metamorphic melanophores. We show that one such mutant, picasso, lacks most metamorphic melanophores and results from mutations in the ErbB gene erbb3b, encoding an EGFR-like receptor tyrosine kinase. To identify critical periods for ErbB activities, we treated fish with pharmacological ErbB inhibitors and also knocked-down erbb3b by morpholino injection. These analyses reveal an embryonic critical period for ErbB signaling in promoting later pigment pattern metamorphosis, despite the normal patterning of embryonic/early larval melanophores. We further demonstrate a peak requirement during neural crest migration that correlates with early defects in neural crest pathfinding and peripheral ganglion formation. Finally, we show that erbb3b activities are both autonomous and non-autonomous to the metamorphic melanophore lineage. These data identify a very early, embryonic, requirement for erbb3b in the development of much later metamorphic melanophores, and suggest complex modes by which ErbB signals promote adult pigment pattern development. PMID:18508863

  7. A Design Principle for an Autonomous Post-translational Pattern Formation

    Directory of Open Access Journals (Sweden)

    Shuhei S. Sugai

    2017-04-01

    Full Text Available Previous autonomous pattern-formation models often assumed complex molecular and cellular networks. This theoretical study, however, shows that a system composed of one substrate with multisite phosphorylation and a pair of kinase and phosphatase can generate autonomous spatial information, including complex stripe patterns. All (de-phosphorylation reactions are described with a generic Michaelis-Menten scheme, and all species freely diffuse without pre-existing gradients. Computational simulation upon >23,000,000 randomly generated parameter sets revealed the design motifs of cyclic reaction and enzyme sequestration by slow-diffusing substrates. These motifs constitute short-range positive and long-range negative feedback loops to induce Turing instability. The width and height of spatial patterns can be controlled independently by distinct reaction-diffusion processes. Therefore, multisite reversible post-translational modification can be a ubiquitous source for various patterns without requiring other complex regulations such as autocatalytic regulation of enzymes and is applicable to molecular mechanisms for inducing subcellular localization of proteins driven by post-translational modifications.

  8. Spatiotemporal pattern formation in a prey-predator model under environmental driving forces

    Science.gov (United States)

    Sirohi, Anuj Kumar; Banerjee, Malay; Chakraborti, Anirban

    2015-09-01

    Many existing studies on pattern formation in the reaction-diffusion systems rely on deterministic models. However, environmental noise is often a major factor which leads to significant changes in the spatiotemporal dynamics. In this paper, we focus on the spatiotemporal patterns produced by the predator-prey model with ratio-dependent functional response and density dependent death rate of predator. We get the reaction-diffusion equations incorporating the self-diffusion terms, corresponding to random movement of the individuals within two dimensional habitats, into the growth equations for the prey and predator population. In order to have the noise added model, small amplitude heterogeneous perturbations to the linear intrinsic growth rates are introduced using uncorrelated Gaussian white noise terms. For the noise added system, we then observe spatial patterns for the parameter values lying outside the Turing instability region. With thorough numerical simulations we characterize the patterns corresponding to Turing and Turing-Hopf domain and study their dependence on different system parameters like noise-intensity, etc.

  9. Moran's I quantifies spatio-temporal pattern formation in neural imaging data.

    Science.gov (United States)

    Schmal, Christoph; Myung, Jihwan; Herzel, Hanspeter; Bordyugov, Grigory

    2017-10-01

    Neural activities of the brain occur through the formation of spatio-temporal patterns. In recent years, macroscopic neural imaging techniques have produced a large body of data on these patterned activities, yet a numerical measure of spatio-temporal coherence has often been reduced to the global order parameter, which does not uncover the degree of spatial correlation. Here, we propose to use the spatial autocorrelation measure Moran's I, which can be applied to capture dynamic signatures of spatial organization. We demonstrate the application of this technique to collective cellular circadian clock activities measured in the small network of the suprachiasmatic nucleus (SCN) in the hypothalamus. We found that Moran's I is a practical quantitative measure of the degree of spatial coherence in neural imaging data. Initially developed with a geographical context in mind, Moran's I accounts for the spatial organization of any interacting units. Moran's I can be modified in accordance with the characteristic length scale of a neural activity pattern. It allows a quantification of statistical significance levels for the observed patterns. We describe the technique applied to synthetic datasets and various experimental imaging time-series from cultured SCN explants. It is demonstrated that major characteristics of the collective state can be described by Moran's I and the traditional Kuramoto order parameter R in a complementary fashion. Python 2.7 code of illustrative examples can be found in the Supplementary Material. christoph.schmal@charite.de or grigory.bordyugov@hu-berlin.de. Supplementary data are available at Bioinformatics online.

  10. Stretch force guides finger-like pattern of bone formation in suture

    Science.gov (United States)

    Kou, Xiao-Xing; Zhang, Ci; Zhang, Yi-Mei; Cui, Zhen; Wang, Xue-Dong; Liu, Yan; Liu, Da-Wei; Zhou, Yan-Heng

    2017-01-01

    Mechanical tension is widely applied on the suture to modulate the growth of craniofacial bones. Deeply understanding the features of bone formation in expanding sutures could help us to improve the outcomes of clinical treatment and avoid some side effects. Although there are reports that have uncovered some biological characteristics, the regular pattern of sutural bone formation in response to expansion forces is still unknown. Our study was to investigate the shape, arrangement and orientation of new bone formation in expanding sutures and explore related clinical implications. The premaxillary sutures of rat, which histologically resembles the sutures of human beings, became wider progressively under stretch force. Micro-CT detected new bones at day 3. Morphologically, these bones were forming in a finger-like pattern, projecting from the maxillae into the expanded sutures. There were about 4 finger-like bones appearing on the selected micro-CT sections at day 3 and this number increased to about 18 at day 7. The average length of these projections increased from 0.14 mm at day 3 to 0.81 mm at day 7. The volume of these bony protuberances increased to the highest level of 0.12 mm3 at day 7. HE staining demonstrated that these finger-like bones had thick bases connecting with the maxillae and thin fronts stretching into the expanded suture. Nasal sections had a higher frequency of finger-like bones occuring than the oral sections at day 3 and day 5. Masson-stained sections showed stretched fibers embedding into maxillary margins. Osteocalcin-positive osteoblasts changed their shapes from cuboidal to spindle and covered the surfaces of finger-like bones continuously. Alizarin red S and calcein deposited in the inner and outer layers of finger-like bones respectively, which showed that longer and larger bones formed on the nasal side of expanded sutures compared with the oral side. Interestingly, these finger-like bones were almost paralleling with the direction

  11. Stretch force guides finger-like pattern of bone formation in suture.

    Directory of Open Access Journals (Sweden)

    Bo-Hai Wu

    Full Text Available Mechanical tension is widely applied on the suture to modulate the growth of craniofacial bones. Deeply understanding the features of bone formation in expanding sutures could help us to improve the outcomes of clinical treatment and avoid some side effects. Although there are reports that have uncovered some biological characteristics, the regular pattern of sutural bone formation in response to expansion forces is still unknown. Our study was to investigate the shape, arrangement and orientation of new bone formation in expanding sutures and explore related clinical implications. The premaxillary sutures of rat, which histologically resembles the sutures of human beings, became wider progressively under stretch force. Micro-CT detected new bones at day 3. Morphologically, these bones were forming in a finger-like pattern, projecting from the maxillae into the expanded sutures. There were about 4 finger-like bones appearing on the selected micro-CT sections at day 3 and this number increased to about 18 at day 7. The average length of these projections increased from 0.14 mm at day 3 to 0.81 mm at day 7. The volume of these bony protuberances increased to the highest level of 0.12 mm3 at day 7. HE staining demonstrated that these finger-like bones had thick bases connecting with the maxillae and thin fronts stretching into the expanded suture. Nasal sections had a higher frequency of finger-like bones occuring than the oral sections at day 3 and day 5. Masson-stained sections showed stretched fibers embedding into maxillary margins. Osteocalcin-positive osteoblasts changed their shapes from cuboidal to spindle and covered the surfaces of finger-like bones continuously. Alizarin red S and calcein deposited in the inner and outer layers of finger-like bones respectively, which showed that longer and larger bones formed on the nasal side of expanded sutures compared with the oral side. Interestingly, these finger-like bones were almost paralleling

  12. Turing pattern formation on the sphere for a morphochemical reaction-diffusion model for electrodeposition

    Science.gov (United States)

    Lacitignola, Deborah; Bozzini, Benedetto; Frittelli, Massimo; Sgura, Ivonne

    2017-07-01

    The present paper deals with the pattern formation properties of a specific morpho-electrochemical reaction-diffusion model on a sphere. The physico-chemical background to this study is the morphological control of material electrodeposited onto spherical particles. The particular experimental case of interest refers to the optimization of novel metal-air flow batteries and addresses the electrodeposition of zinc onto inert spherical supports. Morphological control in this step of the high-energy battery operation is crucial to the energetic efficiency of the recharge process and to the durability of the whole energy-storage device. To rationalise this technological challenge within a mathematical modeling perspective, we consider the reaction-diffusion system for metal electrodeposition introduced in [Bozzini et al., J. Solid State Electr.17, 467-479 (2013)] and extend its study to spherical domains. Conditions are derived for the occurrence of the Turing instability phenomenon and the steady patterns emerging at the onset of Turing instability are investigated. The reaction-diffusion system on spherical domains is solved numerically by means of the Lumped Surface Finite Element Method (LSFEM) in space combined with the IMEX Euler method in time. The effect on pattern formation of variations in the domain size is investigated both qualitatively, by means of systematic numerical simulations, and quantitatively by introducing suitable indicators that allow to assign each pattern to a given morphological class. An experimental validation of the obtained results is finally presented for the case of zinc electrodeposition from alkaline zincate solutions onto copper spheres.

  13. Effects of confinement on pattern formation in two dimensional systems with competing interactions.

    Science.gov (United States)

    Almarza, N G; Pe Combining Cedilla Kalski, J; Ciach, A

    2016-09-28

    Template-assisted pattern formation in monolayers of particles with competing short-range attraction and long-range repulsion interactions (SALR) is studied by Monte Carlo simulations in a simple generic model [N. G. Almarza et al., J. Chem. Phys., 2014, 140, 164708]. We focus on densities corresponding to formation of parallel stripes of particles and on monolayers laterally confined between straight parallel walls. We analyze both the morphology of the developed structures and the thermodynamic functions for broad ranges of temperature T and the separation L2 between the walls. At low temperature stripes parallel to the boundaries appear, with some corrugation when the distance between the walls does not match the bulk periodicity of the striped structure. The stripes integrity, however, is rarely broken for any L2. This structural order is lost at T = TK(L2) depending on L2 according to a Kelvin-like equation. Above the Kelvin temperature TK(L2) many topological defects such as breaking or branching of the stripes appear, but a certain anisotropy in the orientation of the stripes persists. Finally, at high temperature and away from the walls, the system behaves as an isotropic fluid of elongated clusters of various lengths and with various numbers of branches. For L2 optimal for the stripe pattern the heat capacity as a function of temperature takes the maximum at T = TK(L2).

  14. NF2/Merlin is required for the axial pattern formation in the Xenopus laevis embryo.

    Science.gov (United States)

    Zhu, Xuechen; Min, Zheying; Tan, Renbo; Tao, Qinghua

    2015-11-01

    The NF2 gene product Merlin is a FERM-domain protein possessing a broad tumor-suppressing function. NF2/Merlin has been implicated in regulating multiple signaling pathways critical for cell growth and survival. However, it remains unknown whether NF2/Merlin regulates Wnt/β-catenin signaling during vertebrate embryogenesis. Here we demonstrate that NF2/Merlin is required for body pattern formation in the Xenopus laevis embryo. Depletion of the maternal NF2/Merlin enhances organizer gene expression dependent on the presence of β-catenin, and causes dorsanteriorized development; Morpholino antisense oligo-mediated knockdown of the zygotic NF2/Merlin shifts posterior genes anteriorwards and reduces the anterior development. We further demonstrate that targeted depletion of NF2 in the presumptive dorsal tissues increases the levels of nuclear β-catenin in the neural epithelial cells. Biochemical analyses reveal that NF2 depletion promotes the production of active β-catenin and concurrently decreases the level of N-terminally phosphorylated β-catenin under the stimulation of the endogenous Wnt signaling. Our findings suggest that NF2/Merlin negatively regulates the Wnt/β-catenin signaling activity during the pattern formation in early X. laevis embryos. Copyright © 2015. Published by Elsevier Ireland Ltd.

  15. Granular hydrodynamics and pattern formation in vertically oscillated granular disk layers

    Science.gov (United States)

    Carrillo, Jos? A.; P?Schel, Thorsten; Salue?A, Clara

    The goal of this study is to demonstrate numerically that certain hydrodynamic systems, derived from inelastic kinetic theory, give fairly good descriptions of rapid granular flows even if they are way beyond their supposed validity limits. A numerical hydrodynamic solver is presented for a vibrated granular bed in two dimensions. It is based on a highly accurate shock capturing state-of-the-art numerical scheme applied to a compressible Navier-Stokes system for granular flow. The hydrodynamic simulation of granular flows is challenging, particularly in systems where dilute and dense regions occur at the same time and interact with each other. As a benchmark experiment, we investigate the formation of Faraday waves in a two-dimensional thin layer exposed to vertical vibration in the presence of gravity. The results of the hydrodynamic simulations are compared with those of event-driven molecular dynamics and the overall quantitative agreement is good at the level of the formation and structure of periodic patterns. The accurate numerical scheme for the hydrodynamic description improves the reproduction of the primary onset of patterns compared to previous literature. To our knowledge, these are the first hydrodynamic results for Faraday waves in two-dimensional granular beds that accurately predict the wavelengths of the two-dimensional standing waves as a function of the perturbation's amplitude. Movies are available with the online version of the paper.

  16. The Influence of Gene Expression Time Delays on Gierer–Meinhardt Pattern Formation Systems

    KAUST Repository

    Seirin Lee, S.

    2010-03-23

    There are numerous examples of morphogen gradients controlling long range signalling in developmental and cellular systems. The prospect of two such interacting morphogens instigating long range self-organisation in biological systems via a Turing bifurcation has been explored, postulated, or implicated in the context of numerous developmental processes. However, modelling investigations of cellular systems typically neglect the influence of gene expression on such dynamics, even though transcription and translation are observed to be important in morphogenetic systems. In particular, the influence of gene expression on a large class of Turing bifurcation models, namely those with pure kinetics such as the Gierer-Meinhardt system, is unexplored. Our investigations demonstrate that the behaviour of the Gierer-Meinhardt model profoundly changes on the inclusion of gene expression dynamics and is sensitive to the sub-cellular details of gene expression. Features such as concentration blow up, morphogen oscillations and radical sensitivities to the duration of gene expression are observed and, at best, severely restrict the possible parameter spaces for feasible biological behaviour. These results also indicate that the behaviour of Turing pattern formation systems on the inclusion of gene expression time delays may provide a means of distinguishing between possible forms of interaction kinetics. Finally, this study also emphasises that sub-cellular and gene expression dynamics should not be simply neglected in models of long range biological pattern formation via morphogens. © 2010 Society for Mathematical Biology.

  17. Patterned biofilm formation reveals a mechanism for structural heterogeneity in bacterial biofilms.

    Science.gov (United States)

    Gu, Huan; Hou, Shuyu; Yongyat, Chanokpon; De Tore, Suzanne; Ren, Dacheng

    2013-09-03

    Bacterial biofilms are ubiquitous and are the major cause of chronic infections in humans and persistent biofouling in industry. Despite the significance of bacterial biofilms, the mechanism of biofilm formation and associated drug tolerance is still not fully understood. A major challenge in biofilm research is the intrinsic heterogeneity in the biofilm structure, which leads to temporal and spatial variation in cell density and gene expression. To understand and control such structural heterogeneity, surfaces with patterned functional alkanthiols were used in this study to obtain Escherichia coli cell clusters with systematically varied cluster size and distance between clusters. The results from quantitative imaging analysis revealed an interesting phenomenon in which multicellular connections can be formed between cell clusters depending on the size of interacting clusters and the distance between them. In addition, significant differences in patterned biofilm formation were observed between wild-type E. coli RP437 and some of its isogenic mutants, indicating that certain cellular and genetic factors are involved in interactions among cell clusters. In particular, autoinducer-2-mediated quorum sensing was found to be important. Collectively, these results provide missing information that links cell-to-cell signaling and interaction among cell clusters to the structural organization of bacterial biofilms.

  18. Metamorphic pattern of the Cretaceous Celica Formation, SW Ecuador, and its geodynamic implications

    Science.gov (United States)

    Aguirre, Luis

    1992-04-01

    The volcanic rocks of the Cretaceous Celica Formation of southern Ecuador are affected by a weak although widespread alteration. The chemical study of the secondary chemical phases present in andesitic and basaltic lava flows reveals that this alteration corresponds to very low-grade metamorphism comprising the zeolite and the prehnite-pumpellyite facies. Main features of this metamorphism are: weak lithostatic pressure, moderate to steep thermal gradient, high ƒ O2, low value of the seawater/rock ratio and total absence of deformation. These characteristics are typically present in other volcanic suites of similar age and composition along the Andes and correspond to the pattern of metamorphism developed in extensional settings (diastathermal metamorphism) linked to various degrees of thinning of the continental crust. Based on this metamorphic pattern, a geodynamic model is proposed in which the Celica Formation is interpreted as an ensialic, aborted, marginal basin developed on strongly attenuated continental crust at the border of the South American plate. The relationship between the Ecuadorian and Colombian volcanic suites of Cretaceous age present along the Western Cordillera is discussed in the light of the model suggested.

  19. Theoretical approaches to holistic biological features: Pattern formation, neural networks and the brain-mind relation.

    Science.gov (United States)

    Gierer, Alfred

    2002-06-01

    The topic of this article is the relation between bottom-up and top-down, reductionist and holistic approaches to the solution of basic biological problems. While there is no doubt that the laws of physics apply to all events in space and time, including the domains of life, understanding biology depends not only on elucidating the role of the molecules involved, but, to an increasing extent, on systems theoretical approaches in diverse fields of the life sciences. Examples discussed in this article are the generation of spatial patterns in development by the interplay of autocatalysis and lateral inhibition; the evolution of integrating capabilities of the human brain, such as cognition-based empathy; and both neurobiological and epistemological aspects of scientific theories of consciousness and the mind.

  20. Nanoscale topographic pattern formation on Kr{sup +}-bombarded germanium surfaces

    Energy Technology Data Exchange (ETDEWEB)

    Perkinson, Joy C.; Madi, Charbel S.; Aziz, Michael J. [Harvard School of Engineering and Applied Sciences, 9 Oxford Street, Cambridge, Massachusetts 02138 (United States)

    2013-03-15

    The nanoscale pattern formation of Ge surfaces uniformly irradiated by Kr{sup +} ions was studied in a low-contamination environment at ion energies of 250 and 500 eV and at angles of 0 Degree-Sign through 80 Degree-Sign . The authors present a phase diagram of domains of pattern formation occurring as these two control parameters are varied. The results are insensitive to ion energy over the range covered by the experiments. Flat surfaces are stable from normal incidence up to an incidence angle of {theta} = 55 Degree-Sign from normal. At higher angles, the surface is linearly unstable to the formation of parallel-mode ripples, in which the wave vector is parallel to the projection of the ion beam on the surface. For {theta} {>=} 75 Degree-Sign the authors observe perpendicular-mode ripples, in which the wave vector is perpendicular to the ion beam. This behavior is qualitatively similar to those of Madi et al. for Ar{sup +}-irradiated Si but is inconsistent with those of Ziberi et al. for Kr{sup +}-irradiated Ge. The existence of a window of stability is qualitatively inconsistent with a theory based on sputter erosion [R. M. Bradley and J. M. Harper, J. Vac. Sci. Technol. A 6, 2390 (1988)] and qualitatively consistent with a model of ion impact-induced mass redistribution [G. Carter and V. Vishnyakov, Phys. Rev. B 54, 17647 (1996)] as well as a crater function theory incorporating both effects [S. A. Norris et al., Nat. Commun. 2, 276 (2011)]. The critical transition angle between stable and rippled surfaces occurs 10 Degree-Sign -15 Degree-Sign above the value of 45 Degree-Sign predicted by the mass redistribution model.

  1. Photo-induced Nanopattern Formation on Polarity Patterned Lithium Niobate with ZnO-Modified Surfaces

    Science.gov (United States)

    Kaur, Manpuneet; Wang, Xingye; Eller, Brianna; Nemanich, Robert

    2015-03-01

    This research is focused on modifying the surface of polarity patterned lithium niobate (PPLN) templates with ultra thin layers of ZnO. Photo-induced nanopattern formation is employed to discern the effects of thin ZnO on PPLN. The spontaneous polarization of ZnO is intended to be used to enhance the photo-induced transport of electrons to the surface to reduce Ag + to Ag nanoparticles. The ZnO thin films were deposited by plasma enhanced atomic layer deposition (PEALD) at 150 C with 0.2 nm/cycle. Photo-induced Ag nanopatterns were deposited on bare PPLN and 1, 2, 3 and 10 nm ZnO-PPLN heterostructures, immersed on an aqueous AgNO3 solution and illumination with 254 nm UV light. The photo-induced deposition of 1nm ZnO/PPLN results in enhanced Ag nanoparticle formation at domain boundaries. The positive domain selectivity is not observed on 2nm ZnO/PPLN templates, and the deposition becomes the same on both domains. The nanoparticle patterns were not evident for ZnO films thicker than 3nm. The amorphous structure of thick ZnO on PPLN tends to reduce the effect of the ZnO polarization. The effect of polarity patterned thin PEALD ZnO films is discussed to understand photo-induced electron transfer and AgNO3 reduction on ZnO-PPLN heterostructures. This research is supported by the NSF through Grant DMR-1206935.

  2. Secretion pattern, ultrastructural localization and function of extracellular matrix molecules involved in eggshell formation.

    Science.gov (United States)

    Soledad Fernandez, M; Moya, A; Lopez, L; Arias, J L

    2001-01-01

    The chicken eggshell is a composite bioceramic containing organic and inorganic phases. The organic phase contains, among other constituents, type X collagen and proteoglycans (mammillan, a keratan sulfate proteoglycan, and ovoglycan, a dermatan sulfate proteoglycan), whose localization depends on a topographically defined and temporally regulated deposition. Although the distribution of these macromolecules in the eggshell has been well established, little is known about their precise localization within eggshell substructures and oviduct cells or their pattern of production and function during eggshell formation. By using immunofluorescent and immuno-ultrastructural analyses, we examined the distribution of these macromolecules in oviduct cells at different post-oviposition times. To understand the role of proteoglycan sulfation on eggshell formation, we studied the effects of inhibition of proteoglycan sulfation by treatment with sodium chlorate. We showed that these macromolecules are produced by particular oviduct cell populations and at precise post-oviposition times. Based on the precise ultrastructural localization of these macromolecules in eggshell substructures, the timing of the secretion of these macromolecules by oviduct cells and the effects on eggshell formation caused by the inhibition of proteoglycan sulfation, the putative role of mammillan is in the nucleation of the first calcite crystals, while that of ovoglycan is to regulate the growth and orientation of the later forming crystals of the chicken eggshell.

  3. Oblique incidence ion impact pattern formation on Cu(001) along the[100] and [110] azimuthal directions

    Energy Technology Data Exchange (ETDEWEB)

    Everts, Frank; Wormeester, Herbert; Poelsema, Bene [Solid State Physics, MESA, Institute for Nanotechnology, University of Twente, Enschede (Netherlands)

    2010-07-01

    Oblique incidence sputtering is a versatile tool for nanopattern creation on different types of surfaces. Often ripple patterns are observed as a result of an erosion instability. The orientation of the ripples is governed by the polar angle of incidence of the ion beam. High resolution low energy electron diffraction reveal an unanticipated azimuth dependence for Cu(001) at 200 K. Near normal incidence sputtering along[110] gives rise to a diffraction pattern showing a fourfold symmetry of the etch structures. Surprisingly, a further increase of the polar angle shows that this surface imposed fourfold symmetry is preserved up to grazing incidence. In marked contrast are the results for sputtering along the[010] azimuth. Already for near normal incidence the fourfold symmetry in the diffraction pattern is broken, reflecting ripple formation. The orientation of these ripples changes with more oblique incidence sputtering. The explanation for this strong azimuth sensitivity is found by varying the ion energy, showing a strong dependence on the details of the ion substrate interaction.

  4. An updated kernel-based Turing model for studying the mechanisms of biological pattern formation.

    Science.gov (United States)

    Kondo, Shigeru

    2017-02-07

    The reaction-diffusion model presented by Alan Turing has recently been supported by experimental data and accepted by most biologists. However, scientists have recognized shortcomings when the model is used as the working hypothesis in biological experiments, particularly in studies in which the underlying molecular network is not fully understood. To address some such problems, this report proposes a new version of the Turing model. This alternative model is not represented by partial differential equations, but rather by the shape of an activation-inhibition kernel. Therefore, it is named the kernel-based Turing model (KT model). Simulation of the KT model with kernels of various shapes showed that it can generate all standard variations of the stable 2D patterns (spot, stripes and network), as well as some complex patterns that are difficult to generate with conventional mathematical models. The KT model can be used even when the detailed mechanism is poorly known, as the interaction kernel can often be detected by a simple experiment and the KT model simulation can be performed based on that experimental data. These properties of the KT model complement the shortcomings of conventional models and will contribute to the understanding of biological pattern formation. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

  5. Mechanism Underlying the Spatial Pattern Formation of Dominant Tree Species in a Natural Secondary Forest.

    Directory of Open Access Journals (Sweden)

    Guodong Jia

    Full Text Available Studying the spatial pattern of plant species may provide significant insights into processes and mechanisms that maintain stand stability. To better understand the dynamics of naturally regenerated secondary forests, univariate and bivariate Ripley's L(r functions were employed to evaluate intra-/interspecific relationships of four dominant tree species (Populus davidiana, Betula platyphylla, Larix gmelinii and Acer mono and to distinguish the underlying mechanism of spatial distribution. The results showed that the distribution of soil, water and nutrients was not fragmented but presented clear gradients. An overall aggregated distribution existed at most distances. No correlation was found between the spatial pattern of soil conditions and that of trees. Both positive and negative intra- and interspecific relationships were found between different DBH classes at various distances. Large trees did not show systematic inhibition of the saplings. By contrast, the inhibition intensified as the height differences increased between the compared pairs. Except for Larix, universal inhibition of saplings by upper layer trees occurred among other species, and this reflected the vertical competition for light. Therefore, we believe that competition for light rather than soil nutrients underlies the mechanism driving the formation of stand spatial pattern in the rocky mountainous areas examined.

  6. Mapping elementary school students' creativity in science process skills of life aspects viewed from their divergent thinking patterns

    Directory of Open Access Journals (Sweden)

    Bambang Subali

    2017-08-01

    Full Text Available The purpose of this study was to map elementary school students’ creativity in science process skills (SPS of life aspects in science subjects viewed from their divergent thinking patterns using written tests whose items were fitted with Partial Credit Model (PCM. The measurement used a test validated using the IRT approach published in JEE journal in 2015. The trials employed four sets of test, each comprising 20 items completed with anchor items which were fitted referring to PCM. The measurements were performed with larger scale on 14 regional technical implementation unit (RTIU in Yogyakarta Special Province in five regencies/cities to students of grades IV, V, and VI. The findings showed that the higher the grade level, the higher of the testees’ scores would be. There were some testees who did not have divergent thinking ability and they obtained a score of 0 The divergent thinking ability of the students was not related to the regency/city where an RTIU was located.

  7. Pattern formation and non-equilibrium processes on crystalline surfaces induced by energetic ions

    Science.gov (United States)

    Chan, Wai Lun

    Low energy ion bombardment can create self-assembly patterns on a surface through the competition of various ion-induced and surface relaxation processes. Different morphologies (e.g. ripples, mounds, and smoothing) can be formed on the surface depending on the sputtering conditions. In this work, we study how the observation of different kind of morphologies can be explained by the interplay between different microscopic processes on the surface. Copper surfaces are mainly used to investigate these questions. A kinetic phase diagram is proposed to delineate different pattern formation regimes. In addition, by measuring the temperature and flux dependence of the pattern wavelength, we investigate non-equilibrium processes such as ion-induced defect creation, which are otherwise difficult to observe directly. We find that during sputtering, the surface relaxation is primarily enhanced by the defects created by the bombardment process. Another part of the work is devoted to understand the relaxation kinetics of these nano-scale patterns on crystalline surfaces. Relaxations under thermal annealing and with a deposition flux are considered. Our results show that the relaxation under a deposition flux is fundamentally different from the thermal relaxation. Finally, we measure the surface stress created during the ion bombardment process. Stress as high as a few GPa can be induced in the ion-implanted layer and the creation of this stress is explained by the kinetics of ion-induced point defects. The works presented in this dissertation include a combination of experiments, simulations and continuum models. Each of the questions investigated is at least supported by two of these methods.

  8. Globally Stable Microresonator Turing Pattern Formation for Coherent High-Power THz Radiation On-Chip

    Science.gov (United States)

    Huang, Shu-Wei; Yang, Jinghui; Yang, Shang-Hua; Yu, Mingbin; Kwong, Dim-Lee; Zelevinsky, T.; Jarrahi, Mona; Wong, Chee Wei

    2017-10-01

    In nonlinear microresonators driven by continuous-wave (cw) lasers, Turing patterns have been studied in the formalism of the Lugiato-Lefever equation with emphasis on their high coherence and exceptional robustness against perturbations. Destabilization of Turing patterns and the transition to spatiotemporal chaos, however, limit the available energy carried in the Turing rolls and prevent further harvest of their high coherence and robustness to noise. Here, we report a novel scheme to circumvent such destabilization, by incorporating the effect of local mode hybridizations, and we attain globally stable Turing pattern formation in chip-scale nonlinear oscillators with significantly enlarged parameter space, achieving a record-high power-conversion efficiency of 45% and an elevated peak-to-valley contrast of 100. The stationary Turing pattern is discretely tunable across 430 GHz on a THz carrier, with a fractional frequency sideband nonuniformity measured at 7.3 ×10-14 . We demonstrate the simultaneous microwave and optical coherence of the Turing rolls at different evolution stages through ultrafast optical correlation techniques. The free-running Turing-roll coherence, 9 kHz in 200 ms and 160 kHz in 20 minutes, is transferred onto a plasmonic photomixer for one of the highest-power THz coherent generations at room temperature, with 1.1% optical-to-THz power conversion. Its long-term stability can be further improved by more than 2 orders of magnitude, reaching an Allan deviation of 6 ×10-10 at 100 s, with a simple computer-aided slow feedback control. The demonstrated on-chip coherent high-power Turing-THz system is promising to find applications in astrophysics, medical imaging, and wireless communications.

  9. Globally Stable Microresonator Turing Pattern Formation for Coherent High-Power THz Radiation On-Chip

    Directory of Open Access Journals (Sweden)

    Shu-Wei Huang

    2017-10-01

    Full Text Available In nonlinear microresonators driven by continuous-wave (cw lasers, Turing patterns have been studied in the formalism of the Lugiato-Lefever equation with emphasis on their high coherence and exceptional robustness against perturbations. Destabilization of Turing patterns and the transition to spatiotemporal chaos, however, limit the available energy carried in the Turing rolls and prevent further harvest of their high coherence and robustness to noise. Here, we report a novel scheme to circumvent such destabilization, by incorporating the effect of local mode hybridizations, and we attain globally stable Turing pattern formation in chip-scale nonlinear oscillators with significantly enlarged parameter space, achieving a record-high power-conversion efficiency of 45% and an elevated peak-to-valley contrast of 100. The stationary Turing pattern is discretely tunable across 430 GHz on a THz carrier, with a fractional frequency sideband nonuniformity measured at 7.3×10^{−14}. We demonstrate the simultaneous microwave and optical coherence of the Turing rolls at different evolution stages through ultrafast optical correlation techniques. The free-running Turing-roll coherence, 9 kHz in 200 ms and 160 kHz in 20 minutes, is transferred onto a plasmonic photomixer for one of the highest-power THz coherent generations at room temperature, with 1.1% optical-to-THz power conversion. Its long-term stability can be further improved by more than 2 orders of magnitude, reaching an Allan deviation of 6×10^{−10} at 100 s, with a simple computer-aided slow feedback control. The demonstrated on-chip coherent high-power Turing-THz system is promising to find applications in astrophysics, medical imaging, and wireless communications.

  10. Dynamic Pattern Formation for Wings of Pterygota in an Eclosion ---Pattern Analysis for Wings with the Imago---

    Science.gov (United States)

    Seino, M.; Kakazu, Y.

    The vein and cell patterns for the fore and hind wing of Lepidoptera, Hemiptera, Orthoptera and Odonata are analyzed and discussed. For vein patterns of them, the fractal properties are shown and the inequality between four orders is obtained. The nature of wings observed by mass distributions for fractal dimensions of the vein pattern is presented.

  11. From pattern formation to material computation multi-agent modelling of physarum polycephalum

    CERN Document Server

    Jones, Jeff

    2015-01-01

    This book addresses topics of mobile multi-agent systems, pattern formation, biological modelling, artificial life, unconventional computation, and robotics. The behaviour of a simple organism which is capable of remarkable biological and computational feats that seem to transcend its simple component parts is examined and modelled. In this book the following question is asked: How can something as simple as Physarum polycephalum - a giant amoeboid single-celled organism which does not possess any neural tissue, fixed skeleton or organised musculature - can approximate complex computational behaviour during its foraging, growth and adaptation of its amorphous body plan, and with such limited resources? To answer this question the same apparent limitations as faced by the organism are applied: using only simple components with local interactions. A synthesis approach is adopted and a mobile multi-agent system with very simple individual behaviours is employed. It is shown their interactions yield emergent beha...

  12. Self-organized control in cooperative robots using a pattern formation principle

    Energy Technology Data Exchange (ETDEWEB)

    Starke, Jens, E-mail: j.starke@mat.dtu.d [Department of Mathematics, Technical University of Denmark, Matematiktorvet, Building 303 S, DK-2800 Kongens Lyngby (Denmark); Ellsaesser, Carmen [Institute of Applied Mathematics and Interdisciplinary Center for Scientific Computing, University of Heidelberg, Im Neuenheimer Feld 294, D-69120 Heidelberg (Germany); Fukuda, Toshio [Center for Cooperative Research in Advanced Science and Technology, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8603 (Japan)

    2011-05-23

    Self-organized modular approaches proved in nature to be robust and optimal and are a promising strategy to control future concepts of flexible and modular manufacturing processes. We show how this can be applied to a model of flexible manufacturing based on time-dependent robot-target assignment problems where robot teams have to serve manufacturing targets such that an objective function is optimized. Feasibility of the self-organized solutions can be guaranteed even for unpredictable situations like sudden changes in the demands or breakdowns of robots. As example an uncrewed space mission is visualized in a simulation where robots build a space station. - Highlights: Adapting a pattern formation principle to control cooperative robots in a robust way. Flexible manufacturing systems are modelled by time-dependent assignment problems. Coupled selection equations guarantee feasibility of solutions. Solution structure (permutations) is not destroyed by inhomogeneous growth rates. Example of an uncrewed space mission shows effectivity and robustness.

  13. A reaction diffusion model of pattern formation in clustering of adatoms on silicon surfaces

    Directory of Open Access Journals (Sweden)

    Trilochan Bagarti

    2012-12-01

    Full Text Available We study a reaction diffusion model which describes the formation of patterns on surfaces having defects. Through this model, the primary goal is to study the growth process of Ge on Si surface. We consider a two species reaction diffusion process where the reacting species are assumed to diffuse on the two dimensional surface with first order interconversion reaction occuring at various defect sites which we call reaction centers. Two models of defects, namely a ring defect and a point defect are considered separately. As reaction centers are assumed to be strongly localized in space, the proposed reaction-diffusion model is found to be exactly solvable. We use Green's function method to study the dynamics of reaction diffusion processes. Further we explore this model through Monte Carlo (MC simulations to study the growth processes in the presence of a large number of defects. The first passage time statistics has been studied numerically.

  14. Ion beam induced surface pattern formation and stable travelling wave solutions.

    Science.gov (United States)

    Numazawa, Satoshi; Smith, Roger

    2013-03-06

    The formation of ripple structures on ion bombarded semiconductor surfaces is examined theoretically. Previous models are discussed and a new nonlinear model is formulated, based on the infinitesimal local atomic relocation induced by elastic nuclear collisions in the early stages of collision cascades and an associated density change in the near surface region. Within this framework ripple structures are shown to form without the necessity to invoke surface diffusion or large sputtering as important mechanisms. The model can also be extended to the case where sputtering is important, and it is shown that in this case certain 'magic' angles can occur at which the ripple patterns are most clearly defined. The results are in very good agreement with experimental observations.

  15. Direct observation of electric field induced pattern formation and particle aggregation in ferrofluids

    Energy Technology Data Exchange (ETDEWEB)

    Rajnak, Michal; Kopcansky, Peter; Timko, Milan [Institute of Experimental Physics SAS, Watsonova 47, 04001 Košice (Slovakia); Petrenko, Viktor I. [Joint Institute for Nuclear Research, Joliot-Curie 6, 141980 Dubna, Moscow Region (Russian Federation); Kyiv Taras Shevchenko National University, Volodymyrska Street 64, Kyiv 01033 (Ukraine); Avdeev, Mikhail V. [Joint Institute for Nuclear Research, Joliot-Curie 6, 141980 Dubna, Moscow Region (Russian Federation); Ivankov, Olexandr I. [Joint Institute for Nuclear Research, Joliot-Curie 6, 141980 Dubna, Moscow Region (Russian Federation); Kyiv Taras Shevchenko National University, Volodymyrska Street 64, Kyiv 01033 (Ukraine); Moscow Institute of Physics and Technology, Institutskiy per. 9, Dolgoprudniy 141700 (Russian Federation); Feoktystov, Artem [Jülich Centre for Neutron Science (JCNS) at Heinz Maier-Leibnitz Zentrum (MLZ), Forschungszentrum Jülich GmbH, Lichtenbergstr. 1, 85747 Garching (Germany); Dolnik, Bystrik; Kurimsky, Juraj [Faculty of Electrical Engineering and Informatics, Technical University of Košice, Letná 9, 04200 Košice (Slovakia)

    2015-08-17

    Ferrofluids typically respond to magnetic fields and can be manipulated by external magnetic fields. Here, we report on formation of visually observable patterns in a diluted low-polarity ferrofluid exposed to external electric fields. This presents a specific type of ferrofluid structure driven by a combined effect of electrohydrodynamics and electrical body forces. The free charge and permittivity variation are considered to play a key role in the observed phenomenon. The corresponding changes in the ferrofluid structure have been found at nanoscale as well. By small-angle neutron scattering (SANS), we show that the magnetic nanoparticles aggregate in direct current (dc) electric field with a strong dependence on the field intensity. The anisotropic aggregates preferably orient in the direction of the applied electric field. Conducting SANS experiments with alternating current (ac) electric fields of various frequencies, we found a critical frequency triggering the aggregation process. Our experimental study could open future applications of ferrofluids based on insulating liquids.

  16. Trends in ice formation at Lake Neusiedl since 1931 and large-scale oscillation patterns

    Science.gov (United States)

    Soja, Anna-Maria; Maracek, Karl; Soja, Gerhard

    2013-04-01

    Ice formation at Lake Neusiedl (Neusiedler See, Fertitó), a shallow steppe lake (area 320 km2, mean depth 1.2 m) at the border of Austria/Hungary, is of ecological and economic importance. Ice sailing and skating help to keep a touristic off-season alive. Reed harvest to maintain the ecological function of the reed belt (178 km2) is facilitated when lake surface is frozen. Changes in ice formation were analysed in the frame of the EULAKES-project (European Lakes under Environmental Stressors, www.eulakes.eu), financed by the Central Europe Programme of the EU. Data records of ice-on, ice duration and ice-off at Lake Neusiedl starting with the year 1931, and air temperature (nearby monitoring station Eisenstadt - Sopron (HISTALP database and ZAMG)) were used to investigate nearly 80 winters. Additionally, influences of 8 teleconnection patterns, i.e. the Atlantic Multidecadal Oscillation (AMO), the East Atlantic pattern (EAP), the East Atlantic/West Russia pattern (EA/WR), the Eastern Mediterranean Pattern (EMP), the Mediterranean Oscillation (MO) for Algiers and Cairo, and for Israel and Gibraltar, resp., the North Atlantic Oscillation (NAO) and the Scandinavia pattern (SCA) were assessed. Ice cover of Lake Neusiedl showed a high variability between the years (mean duration 71±27 days). Significant trends for later ice-on (p=0.02), shorter ice duration (p=0.07) and earlier ice-off (p=0.02) for the period 1931-2011 were found by regression analysis and trend analysis tests. On an average, freezing of Lake Neusiedl started 2 days later per decade and ice melting began 2 days earlier per decade. Close relationships between mean air temperature and ice formation could be found: ice-on showed a dependency on summer (R=+0.28) and autumn air temperatures (R=+0.51), ice duration and ice off was related to autumn (R=-0.36 and -0.24), winter (R=-0.73 and -0.61) and concurrent spring air temperatures (R=-0.44). Increases of air temperature by 1° C caused an 8.4 days later

  17. Mathematics and biology: a Kantian view on the history of pattern formation theory.

    Science.gov (United States)

    Roth, Siegfried

    2011-12-01

    Driesch's statement, made around 1900, that the physics and chemistry of his day were unable to explain self-regulation during embryogenesis was correct and could be extended until the year 1972. The emergence of theories of self-organisation required progress in several areas including chemistry, physics, computing and cybernetics. Two parallel lines of development can be distinguished which both culminated in the early 1970s. Firstly, physicochemical theories of self-organisation arose from theoretical (Lotka 1910-1920) and experimental work (Bray 1920; Belousov 1951) on chemical oscillations. However, this research area gained broader acceptance only after thermodynamics was extended to systems far from equilibrium (1922-1967) and the mechanism of the prime example for a chemical oscillator, the Belousov-Zhabotinski reaction, was deciphered in the early 1970s. Secondly, biological theories of self-organisation were rooted in the intellectual environment of artificial intelligence and cybernetics. Turing wrote his The chemical basis of morphogenesis (1952) after working on the construction of one of the first electronic computers. Likewise, Gierer and Meinhardt's theory of local activation and lateral inhibition (1972) was influenced by ideas from cybernetics. The Gierer-Meinhardt theory provided an explanation for the first time of both spontaneous formation of spatial order and of self-regulation that proved to be extremely successful in elucidating a wide range of patterning processes. With the advent of developmental genetics in the 1980s, detailed molecular and functional data became available for complex developmental processes, allowing a new generation of data-driven theoretical approaches. Three examples of such approaches will be discussed. The successes and limitations of mathematical pattern formation theory throughout its history suggest a picture of the organism, which has structural similarity to views of the organic world held by the philosopher

  18. Nonconstant Positive Steady States and Pattern Formation of 1D Prey-Taxis Systems

    Science.gov (United States)

    Wang, Qi; Song, Yang; Shao, Lingjie

    2017-02-01

    Prey-taxis is the process that predators move preferentially toward patches with highest density of prey. It is well known to have an important role in biological control and the maintenance of biodiversity. To model the coexistence and spatial distributions of predator and prey species, this paper concerns nonconstant positive steady states of a wide class of prey-taxis systems with general functional responses over 1D domain. Linearized stability of the positive equilibrium is analyzed to show that prey-taxis destabilizes prey-predator homogeneity when prey repulsion (e.g., due to volume-filling effect in predator species or group defense in prey species) is present, and prey-taxis stabilizes the homogeneity otherwise. Then, we investigate the existence and stability of nonconstant positive steady states to the system through rigorous bifurcation analysis. Moreover, we provide detailed and thorough calculations to determine properties such as pitchfork and turning direction of the local branches. Our stability results also provide a stable wave mode selection mechanism for thee reaction-advection-diffusion systems including prey-taxis models considered in this paper. Finally, we provide numerical studies of prey-taxis systems with Holling-Tanner kinetics to illustrate and support our theoretical findings. Our numerical simulations demonstrate that the 2× 2 prey-taxis system is able to model the formation and evolution of various striking patterns, such as spikes, periodic oscillations, and coarsening even when the domain is one-dimensional. These dynamics can model the coexistence and spatial distributions of interacting prey and predator species. We also give some insights on how system parameters influence pattern formation in these models.

  19. [Characteristics of psychosexual development of married couples with epilepsy in the husband in aspect of sexual disharmony formation].

    Science.gov (United States)

    Shynder, V V

    2014-01-01

    Features of formation of sexual disharmony of married couples with epilepsy at the husband are studied. The role of psychosexual development in formation of sexual violations and a matrimonial disadaptation is defined.

  20. Determination of density pattern of fracture in Asmari Formation in Marun oilfield

    Directory of Open Access Journals (Sweden)

    Kheyrollah Noraeinezhad

    2015-05-01

    Full Text Available Marun oilfield is located in the middle part of Dezful Embayment and is situated along the Aghajari, Ahvaz and Ramin anticline. Given the important role of fracture characteristics for improving production, so the aim of this research is to investigate the density pattern of fracture in Asmari formation in Marun oilfield. For this purpose, results of image log, core data, graphic well log, methods of inscribed circle analysis and curvature changes geometry of anticline were analyzed. Asmari formation is the main reservoir rock in Marun oilfield that divided into five zones. Limestone and dolomite are the main lithology of zones 1, 2 and 3 which has a high density of fractures (especially in zones with 90% dolomite. Also there is less fracture density (micro fracture in the 4 and 5 Asmari zone due to an increase of shale and marl layers and due to less break ablity has a less distribution of fractures. The result show that there are a good conformity existed between the results of inscribed circle analysis, image log, core data, curvature and the presence of fractures in Marun anticline. The data indicate that highest density of fracture density concentrates in the southern limb in the central region of anticline and also in the north limb in the northeast region of the anticline. So, finally using these parameters, it is recommended that further development and production wells be drilled in the north eastern part of the oil filed as well as center part of southern flank of the anticline.

  1. Determination of density pattern of fracture in Asmari Formation in Marun oilfield

    Directory of Open Access Journals (Sweden)

    Mehdi Khoshnodkia

    2015-04-01

    Full Text Available Marun oilfield is located in the middle part of Dezful Embayment and is situated along the Aghajari, Ahvaz and Ramin anticline. Given the important role of fracture characteristics for improving production, so the aim of this research is to investigate the density pattern of fracture in Asmari formation in Marun oilfield. For this purpose, results of image log, core data, graphic well log, methods of inscribed circle analysis and curvature changes geometry of anticline were analyzed. Asmari formation is the main reservoir rock in Marun oilfield that divided into five zones. Limestone and dolomite are the main lithology of zones 1, 2 and 3 which has a high density of fractures (especially in zones with 90% dolomite. Also there is less fracture density (micro fracture in the 4 and 5 Asmari zone due to an increase of shale and marl layers and due to less break ablity has a less distribution of fractures. The result show that there are a good conformity existed between the results of inscribed circle analysis, image log, core data, curvature and the presence of fractures in Marun anticline. The data indicate that highest density of fracture density concentrates in the southern limb in the central region of anticline and also in the north limb in the northeast region of the anticline. So, finally using these parameters, it is recommended that further development and production wells be drilled in the north eastern part of the oil filed as well as center part of southern flank of the anticline.

  2. Modeling the PbI2 formation in perovskite solar cells using XRD/XPS patterns

    Science.gov (United States)

    Sohrabpoor, Hamed; Elyasi, Majid; Aldosari, Marouf; Gorji, Nima E.

    2016-09-01

    The impact of prolonged irradiation and air humidity on the stability of perovskite solar cells is modeled using X-ray diffraction and X-ray photoelectron spectroscopy patterns reported in the literature. Light or air-moisture causes the formation of a thin PbI2 or oxide defective layers (in nanoscale) at the interface of perovskite/hole-transport-layer or at the junction with metallic back contact. This thin layer blocks the carrier transport/passivation at the interfaces and cause degradation of device parameters. Variation in thickness of defective layers, changes the XRD and XPS peaks. This allows detection and estimation of the type, crystallinity and thickness of the defective layer. A simple model is developed here to extract the thickness of such thin defective layers formed in nanometer scale at the back region of several perovskite devices. Based on this information, corrected energy band diagram of every device before and after degradation/aging is drawn and discussed in order to obtain insight into the carrier transport and charge collection at the barrier region. In addition, graphene contacted perovskite devices are investigated showing that honey-comb network of graphene contact reduces the effect of aging leading to formation of a thinner defective layer at the perovskite surface compared to perovskite devices with conventional inorganic contacts i.e. Au, Al.

  3. Efficient surface patterning of oligonucleotides inside a glass capillary through oxime bond formation.

    Science.gov (United States)

    Dendane, Nabil; Hoang, Antoine; Guillard, Ludovic; Defrancq, Eric; Vinet, Françoise; Dumy, Pascal

    2007-01-01

    The efficient surface patterning of oligonucleotides was accomplished onto the inner wall of fused-silica capillary tubes as well as on the surface of glass slides through oxime bond formation. The robustness of the method was demonstrated by achieving the surface immobilization of up to three different oligonucleotide sequences inside the same capillary tube. The method involves the preparation of surfaces grafted with reactive aminooxy functionalities masked with the photocleavable protecting group, 2-(2-nitrophenyl) propyloxycarbonyl group (NPPOC). Briefly, NPPOC-aminooxy silane 1 was prepared and used to silanize the glass surfaces. The NPPOC group was cleaved under brief irradiation to unmask the reactive aminooxy group on surfaces. These reactive aminooxy groups were allowed to react with aldehyde-containing oligonucleotides to achieve an efficient surface immobilization. The advantage associated with the present approach is that it combines the high-coupling efficiency of oxime bond formation with the convenience associated with the use of photolabile groups. The present strategy thus offers an alternative approach for the immobilization of biomolecules in the microchannels of "labs on a chip" devices.

  4. Nanoscale pattern formation at surfaces under ion-beam sputtering: A perspective from continuum models

    Energy Technology Data Exchange (ETDEWEB)

    Cuerno, Rodolfo, E-mail: cuerno@math.uc3m.e [Departamento de Matematicas and Grupo Interdisciplinar de Sistemas Complejos (GISC), Universidad Carlos III de Madrid, Avenida de la Universidad 30, E-28911 Leganes, Madrid (Spain); Castro, Mario [GISC and Grupo de Dinamica No Lineal (DNL), Escuela Tecnica Superior de Ingenieria (ICAI), Universidad Pontificia Comillas, E-28015 Madrid (Spain); Munoz-Garcia, Javier [Systems Biology Ireland and GISC, University College Dublin, Belfield, Dublin 4 (Ireland); Gago, Raul; Vazquez, Luis [Instituto de Ciencia de Materiales de Madrid, Consejo Superior de Investigaciones Cientificas, E-28049 Madrid (Spain)

    2011-05-01

    Although reports on surface nanostructuring of solid targets by low to medium energy ion irradiation date back to the 1960s, only with the advent of high resolution tools for surface/interface characterization has the high potential of this procedure been recognized as a method for efficient production of surface patterns. Such morphologies are made up of periodic arrangements of nanometric sized features, like ripples and dots, with interest for technological applications due to their electronic, magnetic, and optical properties. Thus, roughly for the last ten years large efforts have been directed towards harnessing this nanofabrication technique. However, and particularly in view of recent experimental developments, we can say that the basic mechanisms controlling these pattern formation processes remain poorly understood. The lack of nanostructuring at low angles of incidence on some pure monoelemental targets, the role of impurities in the surface dynamics and other recent observations are challenging the classic view on the phenomenon as the mere interplay between the curvature dependence of the sputtering yield and surface diffusion. We review the main attempts at a theoretical (continuum) description of these systems, with emphasis on recent developments. Strong hints already exist that the nature of the morphological instability has to be rethought as originating in the material flow that is induced by the ion beam.

  5. Pattern formation, synchronization, and outbreak of biodiversity in cyclically competing games

    Science.gov (United States)

    Wang, Wen-Xu; Ni, Xuan; Lai, Ying-Cheng; Grebogi, Celso

    2011-01-01

    Species in nature are typically mobile over diverse distance scales, examples of which range from bacteria run to long-distance animal migrations. These behaviors can have a significant impact on biodiversity. Addressing the role of migration in biodiversity microscopically is fundamental but remains a challenging problem in interdisciplinary science. We incorporate both intra- and inter-patch migrations in stochastic games of cyclic competitions and find that the interplay between the migrations at the local and global scales can lead to robust species coexistence characterized dynamically by the occurrence of remarkable target-wave patterns in the absence of any external control. The waves can emerge from either mixed populations or isolated species in different patches, regardless of the size and the location of the migration target. We also find that, even in a single-species system, target waves can arise from rare mutations, leading to an outbreak of biodiversity. A surprising phenomenon is that target waves in different patches can exhibit synchronization and time-delayed synchronization, where the latter potentially enables the prediction of future evolutionary dynamics. We provide a physical theory based on the spatiotemporal organization of the target waves to explain the synchronization phenomena. We also investigate the basins of coexistence and extinction to establish the robustness of biodiversity through migrations. Our results are relevant to issues of general and broader interest such as pattern formation, control in excitable systems, and the origin of order arising from self-organization in social and natural systems.

  6. Line-defect spiral pattern formation during unstable spiral wave propagation in cardiac tissue

    Science.gov (United States)

    Restrepo, Juan; Karma, Alain

    2008-03-01

    Spiral waves of voltage signaling in cardiac tissue are widely recognized to play an important role in the genesis of lethal heart rhythm disorders. Previous modeling studies have shown that the breakup of such waves, which has been proposed as a mechanism for heart fibrillation, can be mediated by a generic period doubling bifurcation. This bifurcation leads to beat-to-beat changes of action potential duration, and hence cellular refractoriness, known as alternans. Here we study the spatial pattern of the period two dynamics before spiral breakup. We find numerically that the line defects, the locus of all points where the dynamics has period one, can form either as a one- or a three-arm spiral pattern where each arm corresponds to a line defect emanating from the spiral core. Three-arm spirals form even when the spiral tip is meandering and lead to a greater dispersion of cellular refractoriness that is proarrhythmic. Analytical results are presented that shed light on the conditions for the formation of one- and three-arm line-defect spirals in the absence of meander.

  7. X-ray photoemission spectromicroscopy of titanium silicide formation in patterned microstructures

    Energy Technology Data Exchange (ETDEWEB)

    Singh, S.; Solak, H.; Cerrina, F. [Univ. of Wisconsin-Madison, Stoughton, WI (United States)] [and others

    1997-04-01

    Titanium silicide has the lowest resistivity of all the refractory metal silicides and has good thermal stability as well as excellent compatibility with Al metallization. It is used as an intermediate buffer layer between W vias and the Si substrate to provide good electrical contact in ULSI technology, whose submicron patterned features form the basis of the integrated circuits of today and tomorrow, in the self aligned silicide (salicide) formation process. TiSi{sub 2} exists in two phases: a metastable C49 base-centered orthorhombic phase with specific resistivity of 60-90 {mu}{Omega}-cm that is formed at a lower temperature (formation anneal) and the stable 12-15 {mu}{Omega}-cm resistivity face-centered orthorhombic C54 phase into which C49 is transformed with a higher temperature (conversion anneal) step. C54 is clearly the target for low resistivity VLSI interconnects. However, it has been observed that when dimensions shrink below 1/mic (or when the Ti thickness drops below several hundred angstroms), the transformation of C49 into C54 is inhibited and agglomeration often occurs in fine lines at high temperatures. This results in a rise in resistivity due to incomplete transformation to C54 and because of discontinuities in the interconnect line resulting from agglomeration. Spectromicroscopy is an appropriate tool to study the evolution of the TiSi2 formation process because of its high resolution chemical imaging ability which can detect bonding changes even in the absence of changes in the relative amounts of species and because of the capability of studying thick {open_quotes}as is{close_quotes} industrial samples.

  8. Geologically Controlled Isotope-Time Patterns Reveal Early Differentiation and Crust Formation Processes

    Science.gov (United States)

    Bennett, V. C.; Nutman, A. P.

    2014-12-01

    The mechanisms of continental crust production and evolution in the early Earth remain controversial, as are questions of the relative roles of early differentiation versus subsequent tectonic procssing in creating Earth's chemical signatures. Here we present geologic observations integrated with whole rock major, trace element and Sm-Nd isotopic signatures and combined with U-Pb and Lu-Hf isotopic compositions of zircon populations from the same rocks, from the most extensive early rock record comprising the 3.9 Ga to 3.6 Ga terranes of southwest Greenland. These data reveal repeated patterns of formation of juvenile TTG crust and associated mafic and ultramafic rocks in convergent margin settings followed by formation of more evolved granites [1]. Our new zircon Lu-Hf data from rare 3.6-3.7 Ga tonalites within the Itsaq Gneiss Complex, obtained from single component, non-migmatitic gneisses with simple zircon populations, limited within sample Hf isotopic variability and accurate U-Pb ages, now document extraction of juvenile tonalites from a near chondritic mantle source between 3.9 Ga and 3.6 Ga. The more evolved, granitic rocks in each area show slightly negative initial ɛHf in accord with crustal reworking of the older (3.8-3.9 Ga) gniesses. There is no evidence for Hadean material in the sources of the granitoids. The Hf isotope-time patterns are consistent with juvenile crust production from a mantle source that experienced only modest amounts of prior crustal extraction. They are distinct from those predicted by reprocessing of an enriched Hadean mafic crust, as has been proposed for this region [2] and for the source of the Hadean Jack Hills zircons [3]. The well-documented, time decreasing, positive 142Nd anomalies [e.g., 4] from these rocks are further evidence of crustal derivation from a convecting mantle source, rather than reworking of an enriched mafic lithosphere. The 143Nd isotopic -time patterns are more complex, reflecting the interplay

  9. Pattern formation and coarse-graining in two-dimensional colloids driven by multiaxial magnetic fields.

    Science.gov (United States)

    Müller, Kathrin; Osterman, Natan; Babič, Dušan; Likos, Christos N; Dobnikar, Jure; Nikoubashman, Arash

    2014-05-13

    We study the pattern formation in a two-dimensional system of superparamagnetic colloids interacting via spatially coherent induced interactions driven by an external precessing magnetic field. On the pair level, upon changing the opening angle of the external field, the interactions smoothly vary from purely repulsive (opening angle equal to zero) to purely attractive (time-averaged pair interactions at an opening angle of 90°). In the experiments, we observed ordered hexagonal crystals at the repulsive end and coarsening frothlike structures for purely attractive interactions. In both of these limiting cases, the dense colloidal systems can be sufficiently accurately described by assuming pairwise additivity of the interaction potentials. However, for a range of intermediate angles, pronounced many-body depolarization effects compete with the direct induced interactions, resulting in inherently anisotropic effective interactions. Under such conditions, we observed the decay of hexagonal order with the concomitant formation of short chains and percolated networks of chains coexisting with free colloids. In order to describe and investigate these systems theoretically, we developed a coarse-grained model of a binary mixture of patchy and nonpatchy particles with the ratio of patchy and nonpatchy colloids as the order parameter. Combining genetic algorithms with Monte Carlo simulations, we optimized the model parameters and quantitatively reproduced the experimentally observed sequence of colloidal structures. The results offer new insight into the anisotropy induced by the many-body effects. At the same time, they allow for a very efficient description of the system by means of a pairwise-additive Hamiltonian, whereupon the original, one-component system features a two-component mixture of isotropic and patchy colloids.

  10. Fibroblast-fibronectin patterning and network formation in 3D fibrin matrices.

    Science.gov (United States)

    Miron-Mendoza, Miguel; Graham, Eric; Manohar, Sujal; Petroll, W Matthew

    2017-06-07

    We previously reported that fibroblasts migrating within 3-D collagen matrices move independently, whereas fibroblasts within 3-D fibrin matrices form an interconnected network. Similar networks have been identified previously during in vivo corneal wound healing. In this study, we investigate the role of fibronectin in mediating this mechanism of collective cell spreading, migration and patterning. To assess cell spreading, corneal fibroblasts were plated within fibrillar collagen or fibrin matrices. To assess migration, compacted cell-populated collagen matrices were nested inside cell-free fibrin matrices. Constructs were cultured in serum-free media containing PDGF, with or without RGD peptide, anti-α5 or anti-fibronectin blocking antibodies. In some experiments, LifeAct and fluorescent fibronectin were used to allow dynamic assessment of cell-induced fibronectin reorganization. 3-D and 4-D imaging were used to assess cell mechanical behavior, connectivity, F-actin, α5 integrin and fibronectin organization. Corneal fibroblasts within 3-D fibrin matrices formed an interconnected network that was lined with cell-secreted fibronectin. Live cell imaging demonstrated that fibronectin tracks were formed at the leading edge of spreading and migrating cells. Furthermore, fibroblasts preferentially migrated through fibronectin tracks laid down by other cells. Interfering with cell-fibronectin binding with RGD, anti α5 integrin or anti fibronectin antibodies inhibited cell spreading and migration through fibrin, but did not affect cell behavior in collagen. In this study, a novel mode of cell patterning was identified in which corneal fibroblasts secrete and attach to fibronectin via α5β1 integrin to facilitate spreading and migration within 3-D fibrin matrices, resulting in the formation of localized fibronectin tracks. Other cells use these fibronectin tracks as conduits, resulting in an interconnected cell-fibronectin network. Copyright © 2017 International

  11. Mechanistic aspects of the formation of carbon-nanofibers on the surface of Ni foam: A new microstructured catalyst support

    NARCIS (Netherlands)

    Jarrah, Nabeel A.; van Ommen, J.G.; Lefferts, Leonardus

    2006-01-01

    This paper describes the catalytic formation of a layer of carbon nanofibers (CNFs) on Ni foam, resulting in a new catalytic route for preparing thin, highly macroporous layers. The effect of morphology and surface properties (i.e., grain size and presence of NiO) on the rate formation and

  12. The shock-induced star formation sequence resulting from a constant spiral pattern speed

    Energy Technology Data Exchange (ETDEWEB)

    Martínez-García, Eric E.; Puerari, Ivânio, E-mail: ericmartinez@inaoep.mx, E-mail: puerari@inaoep.mx [Instituto Nacional de Astrofísica, Óptica y Electrónica (INAOE), Aptdo. Postal 51 y 216, 72000 Puebla, Puebla (Mexico)

    2014-08-01

    We utilize a suite of multiwavelength data of nine nearby spirals to analyze the shock-induced star formation sequence that may result from a constant spiral pattern speed. The sequence involves tracers as the H I, CO 24 μm, and FUV, where the spiral arms were analyzed with Fourier techniques in order to obtain their azimuthal phases as a function of radius. It was found that only two of the objects, NGC 628 and NGC 5194, present coherent phases resembling the theoretical expectations, as indicated by the phase shifts of CO- 24 μm. The evidence is more clear for NGC 5194 and moderate for NGC 628. It was also found that the phase shifts are different for the two spiral arms. With the exception on NGC 3627, a two-dimensional Fourier analysis showed that the rest of the objects do not exhibit bi-symmetric spiral structures of stellar mass, i.e., grand-design spirals. A phase order inversion indicates a corotation radius of ∼89'' for NGC 628 and ∼202'' for NGC 5194. For these two objects, the CO-Hα phase shifts corroborate the CO-24 μm azimuthal offsets. Also for NGC 5194, the CO-70 μm, CO-140 μm, and CO-250 μm phase shifts indicate a corotation region.

  13. Magneto-optic spatial light modulator with one-step pattern formation

    Science.gov (United States)

    Park, Jae-Hyuk; Cho, Jae-Kyeong; Nishimura, Kazuhiro; Uchida, Hironaga; Inoue, Mitsuteru

    2004-06-01

    We demonstrated a magneto-optic spatial light modulator with one-step pattern formation of iron-garnet films on ion-milled substrates by LPE. The one-step pixel growth is based on the combination of a single-crystal epitaxial film growth (pixel area) by LPE and a impeded film growth (pixel gap area) on a substrate whose surface has been locally damaged and milled by ion bombardment before film deposition. This method overcomes the disadvantages associated with groove etching of the conventional MOSLM. The fabricated prototype MOSLM is switched by applying driving currents of 40 mA for the bottom conductor line and 80 mA for the top conductor line under external bias field of 20 Oe, which is over 2 times smaller than that of the conventional MOSLM. These results strongly suggest that the novel MOSLM can provide higher resolution, simpler fabrication process, more compact systems and lower driving current. Also, the selective-area LPE method offers new possibilities for the fabrication of integrated magneto-optic light switch arrays, magnetic waveguides and similar devices.

  14. Peptide induced crystallization of calcium carbonate on wrinkle patterned substrate: implications for chitin formation in molluscs.

    Science.gov (United States)

    Ghatak, Anindita Sengupta; Koch, Marcus; Guth, Christina; Weiss, Ingrid M

    2013-06-04

    We here present the nucleation and growth of calcium carbonate under the influence of synthetic peptides on topographically patterned poly(dimethylsiloxane) (PDMS) substrates, which have a controlled density of defects between the wrinkles. Experiments with two lysine-rich peptides derived from the extracellular conserved domain E22 of the mollusc chitin synthase Ar-CS1, AKKKKKAS (AS8) and EEKKKKKES (ES9) on these substrates showed their influence on the calcium carbonate morphology. A transition from polycrystalline composites to single crystalline phases was achieved with the peptide AS8 by changing the pH of the buffer solution. We analyzed three different pH values as previous experiments showed that E22 interacts with aragonite biominerals more strongly at pH 7.75 than at pH 9.0. At any given pH, crystals appeared in characteristic morphologies only on wrinkled substrates, and did not occur on the flat, wrinkle-free PDMS substrate. These results suggest that these wrinkled substrates could be useful for controlling the morphologies of other mineral/peptide and mineral/protein composites. In nature, these templates are formed enzymatically by glycosyltransferases containing pH-sensitive epitopes, similar to the peptides investigated here. Our in vitro test systems may be useful to gain understanding of the formation of distinct 3D morphologies in mollusc shells in response to local pH shifts during the mineralization of organic templates.

  15. Refinement and Pattern Formation in Neural Circuits by the Interaction of Traveling Waves with Spike-Timing Dependent Plasticity

    Science.gov (United States)

    Bennett, James E. M.; Bair, Wyeth

    2015-01-01

    Traveling waves in the developing brain are a prominent source of highly correlated spiking activity that may instruct the refinement of neural circuits. A candidate mechanism for mediating such refinement is spike-timing dependent plasticity (STDP), which translates correlated activity patterns into changes in synaptic strength. To assess the potential of these phenomena to build useful structure in developing neural circuits, we examined the interaction of wave activity with STDP rules in simple, biologically plausible models of spiking neurons. We derive an expression for the synaptic strength dynamics showing that, by mapping the time dependence of STDP into spatial interactions, traveling waves can build periodic synaptic connectivity patterns into feedforward circuits with a broad class of experimentally observed STDP rules. The spatial scale of the connectivity patterns increases with wave speed and STDP time constants. We verify these results with simulations and demonstrate their robustness to likely sources of noise. We show how this pattern formation ability, which is analogous to solutions of reaction-diffusion systems that have been widely applied to biological pattern formation, can be harnessed to instruct the refinement of postsynaptic receptive fields. Our results hold for rich, complex wave patterns in two dimensions and over several orders of magnitude in wave speeds and STDP time constants, and they provide predictions that can be tested under existing experimental paradigms. Our model generalizes across brain areas and STDP rules, allowing broad application to the ubiquitous occurrence of traveling waves and to wave-like activity patterns induced by moving stimuli. PMID:26308406

  16. Aspects of seasonality and flood generating circulation patterns in a mountainous catchment in south-eastern Germany

    National Research Council Canada - National Science Library

    Petrow, Th; Merz, B; Lindenschmidt, K.-E; Thieken, A. H

    2007-01-01

    Analyses of discharge series, precipitation fields and flood producing atmospheric circulation patterns reveal that two governing flood regimes exist in the Mulde catchment in south-eastern Germany...

  17. Swarming and complex pattern formation in Paenibacillus vortex studied by imaging and tracking cells

    Directory of Open Access Journals (Sweden)

    Jacob Eshel

    2008-02-01

    Full Text Available Abstract Background Swarming motility allows microorganisms to move rapidly over surfaces. The Gram-positive bacterium Paenibacillus vortex exhibits advanced cooperative motility on agar plates resulting in intricate colonial patterns with geometries that are highly sensitive to the environment. The cellular mechanisms that underpin the complex multicellular organization of such a simple organism are not well understood. Results Swarming by P. vortex was studied by real-time light microscopy, by in situ scanning electron microscopy and by tracking the spread of antibiotic-resistant cells within antibiotic-sensitive colonies. When swarming, P. vortex was found to be peritrichously flagellated. Swarming by the curved cells of P. vortex occurred on an extremely wide range of media and agar concentrations (0.3 to 2.2% w/v. At high agar concentrations (> 1% w/v rotating colonies formed that could be detached from the main mass of cells by withdrawal of cells into the latter. On lower percentage agars, cells moved in an extended network composed of interconnected "snakes" with short-term collision avoidance and sensitivity to extracts from swarming cells. P. vortex formed single Petri dish-wide "supercolonies" with a colony-wide exchange of motile cells. Swarming cells were coupled by rapidly forming, reversible and non-rigid connections to form a loose raft, apparently connected via flagella. Inhibitors of swarming (p-Nitrophenylglycerol and Congo Red were identified. Mitomycin C was used to trigger filamentation without inhibiting growth or swarming; this facilitated dissection of the detail of swarming. Mitomycin C treatment resulted in malcoordinated swarming and abortive side branch formation and a strong tendency by a subpopulation of the cells to form minimal rotating aggregates of only a few cells. Conclusion P. vortex creates complex macroscopic colonies within which there is considerable reflux and movement and interaction of cells. Cell

  18. LAWS OF FORMATION MOVEMENT PATTERNS MANAGEMENT BODY IN PHASE OF FLIGHT IN ATHLETES

    Directory of Open Access Journals (Sweden)

    A. V. Razuvanova

    2016-01-01

    Full Text Available Materials and methods. Regularities of movement patterns in the body control the flight phase of the athletes on the example of the long jump were studied by methods of Motion Tracking and electromyography. The findings suggest that a significant difference of motor stereotypes underlying the performance of motor actions – the long jump – in different skill athletes.Results. In the initial phase (phase jumping differences between the groups are small - repulsion athletes perform in a similar manner, a core group of athletes with a more efficient use of the reserve of the work of the knee. The nature of the work the leg muscles in athletes of both groups in this phase is also not different. However, the further execution of motor actions in athletes of both groups occurs in different ways. Athletes of the control group did not perform virtually control the body in flight phase. This is evidenced primarily high tone muscles in the arms, back and neck throughout the flight phase. Movements are performed only in the knee and hip joints, and already in the phase of “hang-up” – the highest point of the flight path - these movements have focused on the preparation for landing.Conclusions. Athletes of the main group in the flight phase involve the full range of movements - flexion and extension are performed as in the shoulder and elbow joints, as well as in the neck and spine joints. All these movements are designed to increase the range of jumps - this contributes to the removal of the legs forward, and giving the body angular acceleration by the movement of legs and head. Preparation for landing is made directly before contact with the surface, but the very nature of the phase of flight allows the athlete to use the inertia of motion of the body as much as possible to lengthen the jump and thus facilitate shock absorption and retention of balance upon landing.Formation movement patterns in the body control the flight phase of the athletes

  19. Dynamic expression reveals a two-step patterning of WUS and CLV3 during axillary shoot meristem formation in Arabidopsis.

    Science.gov (United States)

    Xin, Wei; Wang, Zhicai; Liang, Yan; Wang, Yonghong; Hu, Yuxin

    2017-07-01

    Seed plants have a remarkable capability to produce axillary meristems (AM) in the leaf axils, however, the dynamic establishment of a stem cell niche in AM is largely uncharacterized. We comprehensively examined the dynamic patterning of WUSCHEL (WUS) and CLAVATA3 (CLV3), the two key marker genes defining the shoot stem cell niches, during AM formation in Arabidopsis, and we found that a two-step patterning of WUS and CLV3 occurred during AM stem cell niche establishment. Our further work on the wus and clv3 mutants implicates that such two-step patterning is likely critical for the maintenance of AM progenitor cells and the specification of AM stem cell niche. These data provide a cytological frame for how a stem cell niche is established during AM formation. Copyright © 2017 Elsevier GmbH. All rights reserved.

  20. Dynamical pattern formation in a low-concentration magnetorheological fluid under two orthogonal sinusoidal fields

    Energy Technology Data Exchange (ETDEWEB)

    Yépez, L.D.; Carrillo, J.L. [Instituto de Física de la Universidad Autónoma de Puebla, Ciudad Universitaria, Edif. 110 A, Puebla 72570 (Mexico); Donado, F.; Sausedo-Solorio, J.M.; Miranda-Romagnoli, P. [Instituto de Ciencias Básicas e Ingeniería Universidad Autónoma del Estado de Hidalgo, Pachuca 42090, Pachuca (Mexico)

    2016-06-15

    The dynamical pattern formation of clusters of magnetic particles in a low-concentration magnetorheological fluid, under the influence of a superposition of two perpendicular sinusoidal fields, is studied experimentally. By varying the frequency and phase shift of the perpendicular fields, this configuration enables us to experimentally analyze a wide range of field configurations, including the case of a pure rotating field and the case of an oscillating unidirectional field. The fields are applied parallel to the horizontal plane where the fluid lies or in the vertical plane. For fields applied in the horizontal plane, we observed that, when the ratio of the frequencies increases, the average cluster size exhibits a kind of periodic resonances. When the phase shift between the fields is varied, the average chain length reaches maximal values for the cases of the rotating field and the unidirectional case. We analyze and discuss these results in terms of a weighted average of the time-dependent Mason number. In the case of a rotating field on the vertical plane, we also observe that the competition between the magnetic and the viscous forces determines the average cluster size. We show that this configuration generates a series of physically meaningful self-organization of clusters and transport phenomena. - Highlights: • A weighted average of the time-dependent Mason number is proposed. • The self-propelling clusters appear when a vertical rotating magnetic field is applied. • The largest average chain lengths are reached when frequencies are multiples one another. • Rotating and unidirectional alternating fields produce the largest average chain length values.

  1. Cross-correlation patterns in social opinion formation with sequential data

    Science.gov (United States)

    Chakrabarti, Anindya S.

    2016-11-01

    Recent research on large-scale internet data suggests existence of patterns in the collective behavior of billions of people even though each of them may pursue own activities. In this paper, we interpret online rating activity as a process of forming social opinion about individual items, where people sequentially choose a rating based on the current information set comprising all previous ratings and own preferences. We construct an opinion index from the sequence of ratings and we show that (1) movie-specific opinion converges much slower than an independent and identically distributed (i.i.d.) sequence of ratings, (2) rating sequence for individual movies shows lesser variation compared to an i.i.d. sequence of ratings, (3) the probability density function of the asymptotic opinions has more spread than that defined over opinion arising from i.i.d. sequence of ratings, (4) opinion sequences across movies are correlated with significantly higher and lower correlation compared to opinion constructed from i.i.d. sequence of ratings, creating a bimodal cross-correlation structure. By decomposing the temporal correlation structures from panel data of movie ratings, we show that the social effects are very prominent whereas group effects cannot be differentiated from those of surrogate data and individual effects are quite small. The former explains a large part of extreme positive or negative correlations between sequences of opinions. In general, this method can be applied to any rating data to extract social or group-specific effects in correlation structures. We conclude that in this particular case, social effects are important in opinion formation process.

  2. Pigment Pattern Formation in the Guppy, Poecilia reticulata, Involves the Kita and Csf1ra Receptor Tyrosine Kinases

    Science.gov (United States)

    Kottler, Verena A.; Fadeev, Andrey; Weigel, Detlef; Dreyer, Christine

    2013-01-01

    Males of the guppy (Poecilia reticulata) vary tremendously in their ornamental patterns, which are thought to have evolved in response to a complex interplay between natural and sexual selection. Although the selection pressures acting on the color patterns of the guppy have been extensively studied, little is known about the genes that control their ontogeny. Over 50 years ago, two autosomal color loci, blue and golden, were described, both of which play a decisive role in the formation of the guppy color pattern. Orange pigmentation is absent in the skin of guppies with a lesion in blue, suggesting a defect in xanthophore development. In golden mutants, the development of the melanophore pattern during embryogenesis and after birth is affected. Here, we show that blue and golden correspond to guppy orthologs of colony-stimulating factor 1 receptor a (csf1ra; previously called fms) and kita. Most excitingly, we found that both genes are required for the development of the black ornaments of guppy males, which in the case of csf1ra might be mediated by xanthophore–melanophore interactions. Furthermore, we provide evidence that two temporally and genetically distinct melanophore populations contribute to the adult camouflage pattern expressed in both sexes: one early appearing and kita-dependent and the other late-developing and kita-independent. The identification of csf1ra and kita mutants provides the first molecular insights into pigment pattern formation in this important model species for ecological and evolutionary genetics. PMID:23666934

  3. Psychological Aspects of the Formation of an Individual's Secondary Linguistic Identity in the Professional Training of Linguists

    Science.gov (United States)

    Nechaev, Nikolai Nikolaevich

    2016-01-01

    The article is devoted to one of the major problems of educational psychology: the professional training of specialists in intercultural communication. The proposed approach allows us to uncover the significance of the concept of "linguistic consciousness" and methods governing its application to the process of the formation of the…

  4. Formation of Polychlorinated Biphenyls on Secondary Copper Production Fly Ash: Mechanistic Aspects and Correlation to Other Persistent Organic Pollutants

    Science.gov (United States)

    Jiang, Xiaoxu; Liu, Guorui; Wang, Mei; Zheng, Minghui

    2015-09-01

    Emission of unintentionally formed polychlorinated biphenyls (PCBs) from industrial thermal processes is a global issue. Because the production and use of technical PCB mixtures has been banned, industrial thermal processes have become increasingly important sources of PCBs. Among these processes, secondary copper smelting is an important PCB source in China. In the present study, the potential for fly ash-mediated formation of PCBs in the secondary copper industry, and the mechanisms involved, were studied in laboratory thermochemical experiments. The total PCB concentrations were 37-70 times higher than the initial concentrations. Thermochemical reactions on the fly ash amplified the potential toxic equivalents of PCBs. The formation of PCBs over time and the effect of temperature were investigated. Based on analyses of PCB homologue profiles with different reaction conditions, a chlorination mechanism was proposed for forming PCBs in addition to a de novo synthesis mechanism. The chlorination pathway was supported by close correlations between each pair of adjacent homologue groups. Formation of PCBs and multiple persistent organic pollutants, including polychlorinated dibenzo-p-dioxins, polychlorinated dibenzofurans and polychlorinated naphthalenes, occurred during the tests, indicating that these compounds may share similar formation mechanisms.

  5. A Review of Aspects of Oxidative Hair Dye Chemistry with Special Reference toN-Nitrosamine Formation.

    Science.gov (United States)

    Lewis, David; Mama, John; Hawkes, Jamie

    2013-02-13

    This review discusses a new aspect to the safety profile of oxidative hair dyes using data already in the public domain. These dyes contain secondary amines that are capable of forming potentially carcinogenic nitrosamine derivatives when exposed to atmospheric pollution. Numerous scientific articles confirm the existence of secondary amines in hair dyes (and their intermediates), the possibility of nitrosation by atmospheric NO x of secondary amines to give the N- nitrosamines, and the significant safety risks on N -nitrosamines. It is believed that such nitrosamine derivatives should be investigated more fully in the interests of consumer safety.

  6. A Review of Aspects of Oxidative Hair Dye Chemistry with Special Reference to N-Nitrosamine Formation

    Directory of Open Access Journals (Sweden)

    Jamie Hawkes

    2013-02-01

    Full Text Available This review discusses a new aspect to the safety profile of oxidative hair dyes using data already in the public domain. These dyes contain secondary amines that are capable of forming potentially carcinogenic nitrosamine derivatives when exposed to atmospheric pollution. Numerous scientific articles confirm the existence of secondary amines in hair dyes (and their intermediates, the possibility of nitrosation by atmospheric NOx of secondary amines to give the N-nitrosamines, and the significant safety risks on N-nitrosamines. It is believed that such nitrosamine derivatives should be investigated more fully in the interests of consumer safety.

  7. Formats

    Directory of Open Access Journals (Sweden)

    Gehmann, Ulrich

    2012-03-01

    Full Text Available In the following, a new conceptual framework for investigating nowadays’ “technical” phenomena shall be introduced, that of formats. The thesis is that processes of formatting account for our recent conditions of life, and will do so in the very next future. It are processes whose foundations have been laid in modernity and which will further unfold for the time being. These processes are embedded in the format of the value chain, a circumstance making them resilient to change. In addition, they are resilient in themselves since forming interconnected systems of reciprocal causal circuits.Which leads to an overall situation that our entire “Lebenswelt” became formatted to an extent we don’t fully realize, even influencing our very percep-tion of it.

  8. Formation of Polychlorinated Biphenyls on Secondary Copper Production Fly Ash: Mechanistic Aspects and Correlation to Other Persistent Organic Pollutants

    OpenAIRE

    Xiaoxu Jiang; Guorui Liu; Mei Wang; Minghui Zheng

    2015-01-01

    Emission of unintentionally formed polychlorinated biphenyls (PCBs) from industrial thermal processes is a global issue. Because the production and use of technical PCB mixtures has been banned, industrial thermal processes have become increasingly important sources of PCBs. Among these processes, secondary copper smelting is an important PCB source in China. In the present study, the potential for fly ash-mediated formation of PCBs in the secondary copper industry, and the mechanisms involve...

  9. Some aspects of the formation of nitric oxide during the combustion of biomass fuels in a laboratory furnace

    Energy Technology Data Exchange (ETDEWEB)

    Olanders, Birgitta (Chalmers Univ. of Technology, Goeteborg (Sweden). Dept. of Inorganic Chemistry); Gunners, N.-E. (National Defence Research Establishment, Tumba (Sweden))

    1994-01-01

    The influence of bed-region stoichiometric ratio and fuel nitrogen content on the formation of gaseous species formed during grate combustion of biomass fuels is reported based on gas measurements made within the fuel bed. Three fuels were studied: two mixtures of pelletized bark and wood chips and one of pelletized straw. Experiments were performed in a vertical, cylindrical, laboratory-scale grate-furnace with 0.245 m i.d. and 1.8 m height. Results were compared with values calculated using a computer program for thermochemical equilibrium conditions. The measured contents of O[sub 2], CO[sub 2] CO and H[sub 2] show good agreement with calculated equilibrium conditions at all bed region stoichiometries. A higher formation of NO was found for the straw fuel than for the bark/wood chip fuels. This is not in accordance with the thermochemical equilibrium calculations indicating that the formation of nitric oxide does not attain thermochemical equilibrium and that the nitrogen content of the fuel has an influence on the amount of NO that is formed. (author)

  10. SCIENTIFIC AND METHODICAL ASPECTS OF FORMATION OF SUBJECT CONTENT OF TRAINING COURSESFOR INVERSE PROBLEMS FOR DIFFERENTIAL EQUATIONS

    Directory of Open Access Journals (Sweden)

    В С Корнилов

    2016-12-01

    Full Text Available The article presents scientific and methodical aspects of forming the content of education inverse problems for differential equations for students of higher educational institutions of physical, mathematical and natural science training areas. The goals are formulated and the principles of training are the content of learning inverse problems for differential equations. Attention is drawn to the particular issues of teaching courses inverse problems. Describes the classification criteria and target modules that play the role of tools to create and analyze the model and curriculum, forming learning content inverse problems for differential equations. The content classification features and target modules. Formulate conclusions that learning the inverse problems for differential equations has scientific, educational and humanitarian potential of students and as a result of this training they gain the fundamental knowledge in the applied and computational mathematics, and also develop scientific worldview, applied, environmental, information thinking.

  11. Expression pattern of odontogenic ameloblast-associated and amelotin during formation and regeneration of the junctional epithelium

    OpenAIRE

    Kuroda, S.; Moffatt, P; Nanci, A.; R Wazen; C Nishio

    2010-01-01

    The junctional epithelium (JE) adheres to the tooth surface, and seals off periodontal tissues from the oral environment. This incompletely differentiated epithelium is formed initially by the fusion of the reduced enamel organ with the oral epithelium (OE). Two proteins, odontogenic ameloblast-associated (ODAM) and amelotin (AMTN), have been identified in the JE. The objective of this study was to evaluate their expression pattern during formation and regeneration of the JE. Cytokeratin 14 w...

  12. The definition of psychological aspects in the formation of student-centered motivation of students for classes in physical education

    Directory of Open Access Journals (Sweden)

    V.A. Gruzhevsky

    2013-10-01

    Full Text Available An analysis of the publications, which demonstrates the importance of the emotional state in the formation of motivation as a psychological phenomenon. Shows the impact of physical education on the state of mental and emotional stress. Presented scientific analysis of psycho-emotional states in the 3rd year students with the region of residence and ethnicity. The study used survey results found that the circumstances are displayed on the psycho-emotional state of students. In their view, were: irritability, lack of confidence, fatigue, concern, guilt, etc. These conditions are more common in women of ethnic groups and from rural areas. It should be noted that the girls are very carefully described their emotional state and chose the answer in the questionnaire (sometimes, this response was dominant. Young men in many positions were more restrained. It is established that the formation of student-centered motivation of students to physical education should be adjusted in their emotional state. In this strategy the learning process of physical education is built on individual, ethnic differences.

  13. A new mechanism for spatial pattern formation via lateral and protrusion-mediated lateral signalling.

    Science.gov (United States)

    Hadjivasiliou, Zena; Hunter, Ginger L; Baum, Buzz

    2016-11-01

    Tissue organization and patterning are critical during development when genetically identical cells take on different fates. Lateral signalling plays an important role in this process by helping to generate self-organized spatial patterns in an otherwise uniform collection of cells. Recent data suggest that lateral signalling can be mediated both by junctional contacts between neighbouring cells and via cellular protrusions that allow non-neighbouring cells to interact with one another at a distance. However, it remains unclear precisely how signalling mediated by these distinct types of cell-cell contact can physically contribute to the generation of complex patterns without the assistance of diffusible morphogens or pre-patterns. To explore this question, in this work we develop a model of lateral signalling based on a single receptor/ligand pair as exemplified by Notch and Delta. We show that allowing the signalling kinetics to differ at junctional versus protrusion-mediated contacts, an assumption inspired by recent data which show that the cleavage of Notch in several systems requires both Delta binding and the application of mechanical force, permits individual cells to act to promote both lateral activation and lateral inhibition. Strikingly, under this model, in which Delta can sequester Notch, a variety of patterns resembling those typical of reaction-diffusion systems is observed, together with more unusual patterns that arise when we consider changes in signalling kinetics, and in the length and distribution of protrusions. Importantly, these patterns are self-organizing-so that local interactions drive tissue-scale patterning. Together, these data show that protrusions can, in principle, generate different types of patterns in addition to contributing to long-range signalling and to pattern refinement. © 2016 The Authors.

  14. Electrochemical CO2 reduction on Au surfaces: mechanistic aspects regarding the formation of major and minor products.

    Science.gov (United States)

    Cave, Etosha R; Montoya, Joseph H; Kuhl, Kendra P; Abram, David N; Hatsukade, Toru; Shi, Chuan; Hahn, Christopher; Nørskov, Jens K; Jaramillo, Thomas F

    2017-06-21

    In the future, industrial CO2 electroreduction using renewable energy sources could be a sustainable means to convert CO2 and water into commodity chemicals at room temperature and atmospheric pressure. This study focuses on the electrocatalytic reduction of CO2 on polycrystalline Au surfaces, which have high activity and selectivity for CO evolution. We explore the catalytic behavior of polycrystalline Au surfaces by coupling potentiostatic CO2 electrolysis experiments in an aqueous bicarbonate solution with high sensitivity product detection methods. We observed the production of methanol, in addition to detecting the known products of CO2 electroreduction on Au: CO, H2 and formate. We suggest a mechanism that explains Au's evolution of methanol. Specifically, the Au surface does not favor C-O scission, and thus is more selective towards methanol than methane. These insights could aid in the design of electrocatalysts that are selective for CO2 electroreduction to oxygenates over hydrocarbons.

  15. Formation and Evolution of Target Patterns in Cahn-Hilliard Flows: An Extension of the Flux Expulsion Studies in MHD

    Science.gov (United States)

    Fan, Xiang; P H Diamond Collaboration; Luis Chacon Collaboration

    2017-10-01

    Spinodal decomposition is a second order phase transition for a binary liquid mixture to evolve from a miscible phase (e.g., water + alcohol) to two co-existing phases (e.g., water + oil). The Cahn-Hilliard model for spinodal decomposition is analogous to 2D MHD. We study the evolution of the concentration field in a single eddy in the 2D Cahn-Hilliard system to better understand scalar mixing processes in that system. This study extends investigations of the classic studies of flux expulsion in 2D MHD and homogenization of potential vorticity in 2D fluids. Simulation results show that there are three stages in the evolution: (A) formation of a ``jelly roll'' pattern, for which the concentration field is constant along spirals; (B) a change in isoconcentration contour topology; and (C) formation of a target pattern, for which the isoconcentration contours follow concentric annuli. In the final target pattern stage, the isoconcentration bands align with stream lines. The results indicate that the target pattern is a metastable state. Band merger process continues on a time scale exponentially long relative to the eddy turnover time. The band merger process resembles step merger in drift-ZF staircases. This material is based upon work supported by the U.S. Department of Energy, Office of Science, Office of Fusion Energy Sciences, under Award Number DE-FG02-04ER54738.

  16. Formation of Innovative Consciousness as One of the Key Aspects of Ensuring the Innovative Scenario of Economic Development

    Directory of Open Access Journals (Sweden)

    Aleksey Zhanovich Yakushev

    2015-12-01

    Full Text Available The present article is devoted to questions of formation of consciousness of decision-making persons, and consciousness roles at management of innovative development which is considered as a necessary condition of steady growth, especially in the conditions of the current crisis. Ensuring development of Russia as social and economic system, demands wide use of technical, organizational and administrative, and social innovations that can’t be reached without distribution of innovative consciousness. The consciousness determines character of decisions on an exit from a crisis situation, in particular by overcoming “a raw damnation”. Innovative consciousness allows to identify challenges adequately and to realize effective system of actions on the basis of the systematized threats. In these circumstances the consciousness becomes economic factor, one of the most important drivers of growth. Using the system and systemic-functional analysis, as well as the theory of crisis management, the author reveals a role of innovative consciousness in overcoming crisis situations, and also the factors defining formation of innovative consciousness in Russia. In this article the model according to which any consciousness, including innovative, is defined by cumulative influence of ideology, outlook, the social and economic stimulation given to the system corresponding to national model of management is offered. It is shown that in Russia, distribution of innovative consciousness as dominating for the persons making the decision can be reached at correction of the most mobile factors forming consciousness, ideologies, and socio-economic stimulation. Results of the work are intended for federal and regional authorities of Russia, managing directors of innovation development of economics.

  17. Measurements of pattern formation in a confocal optical parametrical oscillator with applications in quantum optics

    DEFF Research Database (Denmark)

    Lassen, Mikael Østergaard; Buchhave, Preben

    We describe simultaneous measurements of signal/idler near field and far field patterns of a 2nd order nonlinear multi-mode parametric downconverter. We also describe the use of auto- and cross correlation techniques to obtain statistical data....

  18. Swarming and complex pattern formation in Paenibacillus vortex studied by imaging and tracking cells

    NARCIS (Netherlands)

    Ingham, C.J.; Jacob, Ben E.

    2008-01-01

    Background: Swarming motility allows microorganisms to move rapidly over surfaces. The Grampositive bacterium Paenibacillus vortex exhibits advanced cooperative motility on agar plates resulting in intricate colonial patterns with geometries that are highly sensitive to the environment. The cellular

  19. Efficient formation of extended line intensity patterns using matched-filtering generalized phase contrast

    DEFF Research Database (Denmark)

    Bañas, Andrew Rafael; Palima, Darwin; Aabo, Thomas

    2013-01-01

    We demonstrate the efficient generation of line patterns using matched-filtering Generalized Phase Contrast (mGPC). So far, the main emphasis of mGPC light addressing has been on the creation of rapidly reconfigurable focused spots. This has recently been extended to encoding extended line patterns...... for structured light applications and advanced microscopy. © (2013) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE). Downloading of the abstract is permitted for personal use only....

  20. Investigation on long-term safety aspects of a radioactive waste repository in a diagenic clay formation. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Jobmann, M.; Gazul, R. [DBE Technology GmbH, Peine (Germany); Fluegge, J. [Gesellschaft fuer Anlagen- und Reaktorsicherheit (GRS) gGmbH, Braunschweig (Germany); and others

    2017-03-28

    The report presents the sealing concept developed for a Russian near surface low/intermediate level (LILW) waste repository at the ''radon site'' in the lower Cambrian ''blue clay'' formation. The radioactive wastes will be transported to the repository through a tunnel that will connect the underground disposal areas with the surface facilities. Two ventilation shafts for fresh and exhaust air will also connect the underground facilities with the surface. Specific characteristics of the flow regime in the studied area have been simulated. For the construction of a potential repository site it is necessary to know the possible contaminant transport paths to the surface and the biosphere. Due to the lack of sufficient data the calculation can only indicate tendencies that can trigger future explorations. Simulations of the radionuclide (C-14, Cl-36, Se-79, I-129) release from the repository in the liquid phase show a similar behavior as for other repositories in clay. Probabilistic simulations show a large variation of obtained results as a result of the parameter uncertainty.

  1. Generation of lycopene-overproducing strains of the fungus Mucor circinelloides reveals important aspects of lycopene formation and accumulation.

    Science.gov (United States)

    Zhang, Yingtong; Chen, Haiqin; Navarro, Eusebio; López-García, Sergio; Chen, Yong Q; Zhang, Hao; Chen, Wei; Garre, Victoriano

    2017-03-01

    To generate lycopene-overproducing strains of the fungus Mucor circinelloides with interest for industrial production and to gain insight into the catalytic mechanism of lycopene cyclase and regulatory process during lycopene overaccumulation. Three lycopene-overproducing mutants were generated by classic mutagenesis techniques from a β-carotene-overproducing strain. They carried distinct mutations in the carRP gene encoding lycopene cyclase that produced loss of enzymatic activity to different extents. In one mutant (MU616), the lycopene cyclase was completely destroyed, and a 43.8% (1.1 mg/g dry mass) increase in lycopene production was observed in comparison to that by the previously existing lycopene overproducer. In addition, feedback regulation of the end product was suggested in lycopene-overproducing strains. A lycopene-overaccumulating strain of the fungus M. circinelloides was generated that could be an alternative for the industrial production of lycopene. Vital catalytic residues for lycopene cyclase activity and the potential mechanism of lycopene formation and accumulation were identified.

  2. Deep phylogenomics of a tandem-repeat galectin regulating appendicular skeletal pattern formation.

    Science.gov (United States)

    Bhat, Ramray; Chakraborty, Mahul; Glimm, Tilmann; Stewart, Thomas A; Newman, Stuart A

    2016-08-18

    A multiscale network of two galectins Galectin-1 (Gal-1) and Galectin-8 (Gal-8) patterns the avian limb skeleton. Among vertebrates with paired appendages, chondrichthyan fins typically have one or more cartilage plates and many repeating parallel endoskeletal elements, actinopterygian fins have more varied patterns of nodules, bars and plates, while tetrapod limbs exhibit tandem arrays of few, proximodistally increasing numbers of elements. We applied a comparative genomic and protein evolution approach to understand the origin of the galectin patterning network. Having previously observed a phylogenetic constraint on Gal-1 structure across vertebrates, we asked whether evolutionary changes of Gal-8 could have critically contributed to the origin of the tetrapod pattern. Translocations, duplications, and losses of Gal-8 genes in Actinopterygii established them in different genomic locations from those that the Sarcopterygii (including the tetrapods) share with chondrichthyans. The sarcopterygian Gal-8 genes acquired a potentially regulatory non-coding motif and underwent purifying selection. The actinopterygian Gal-8 genes, in contrast, did not acquire the non-coding motif and underwent positive selection. These observations interpreted through the lens of a reaction-diffusion-adhesion model based on avian experimental findings can account for the distinct endoskeletal patterns of cartilaginous, ray-finned, and lobe-finned fishes, and the stereotypical limb skeletons of tetrapods.

  3. Theoretical aspects of solid state reactions in a mixed particulate ensemble and kinetics of lead zirconate formation

    Energy Technology Data Exchange (ETDEWEB)

    Chandratreya, S.S.

    1979-09-01

    A theoretical analysis was carried out to estimate the quasi-steady-state external mass transport by lattice, surface and gaseous diffusion in terms of the stereologically measurable microstructural parameters of a mixed powder compact. It was shown that the gaseous transport can be described by a single dimensionless quantity termed sublimation transport modulus. Using these equations, the relative importance of the alternate external transport modes can be evaluated. Experimental work determined the reaction isotherms for the formation of lead zirconate from yellow PbO and monoclinic zirconia between 710/sup 0/C to 810/sup 0/C for two zirconia size distributions. The larger zirconia showed diffusion controlled shrinking core kinetics up to about 90 percent reaction while the smaller zirconia indicated a diffusion controlled spherical growth of up to 85 percent reaction after an instantaneous nucleation at a limited number of sites. The difference was attributed to the differences in the mixing time and not to the particulate sizes. It was observed that for the same size range, a longer mixing operation gave a better dispersion of reactants which resulted in a higher nucleation site density required for a shrinking core type of product morphology and faster kinetics. A microprobe profile analysis of partially reacted particles confirmed that for the shorter mixing period, reaction resultedin a nucleation-growth-impingement type of morphology. The activation energy as calculated from the nucleation-growth model fit to the data was 138 Kcal/mole which is close to 131 Kcal/mole reported for Pb/sup 2 +/ diffusion in PbZrO/sub 3/. Approximate calculations show that the gaseous external mass flux of PbO was negligible compared to the lattice or surface diffusive flux.

  4. Gain-of-function mutations in Aqp3a influence zebrafish pigment pattern formation through the tissue environment.

    Science.gov (United States)

    Eskova, Anastasia; Chauvigné, Francois; Maischein, Hans-Martin; Ammelburg, Moritz; Cerdà, Joan; Nüsslein-Volhard, Christiane; Irion, Uwe

    2017-06-01

    The development of the pigmentation pattern in zebrafish is a tightly regulated process that depends on both the self-organizing properties of pigment cells and extrinsic cues from other tissues. Many of the known mutations that alter the pattern act cell-autonomously in pigment cells, and our knowledge about external regulators is limited. Here, we describe novel zebrafish mau mutants, which encompass several dominant missense mutations in Aquaporin 3a (Aqp3a) that lead to broken stripes and short fins. A loss-of-function aqp3a allele, generated by CRISPR-Cas9, has no phenotypic consequences, demonstrating that Aqp3a is dispensable for normal development. Strikingly, the pigment cells from dominant mau mutants are capable of forming a wild-type pattern when developing in a wild-type environment, but the surrounding tissues in the mutants influence pigment cell behaviour and interfere with the patterning process. The mutated amino acid residues in the dominant alleles line the pore surface of Aqp3a and influence pore permeability. These results demonstrate an important effect of the tissue environment on pigment cell behaviour and, thereby, on pattern formation. © 2017. Published by The Company of Biologists Ltd.

  5. First union formation in Estonia, Latvia and Lithuania: patterns across countries and gender

    Directory of Open Access Journals (Sweden)

    Luule Sakkeus

    2007-11-01

    Full Text Available This article examines the transformation of first union formation in the Baltic countries between the late 1960s and early 1990s, in the context of societal and family-level gender relations. The analyses employ microdata from the European Family and Fertility Surveys program. Our results on the trends indicate that in Estonia and Latvia the shift from direct marriage to cohabitation started well before the fall of socialist regime. Event-history models provide support for a hypothesised association between union formation and gender system, with Lithuania showing more traditional features in both respect, plausibly embedded in long-standing cultural differences between the countries.

  6. Linking Pattern Formation and Alternative Stable States: Ecohydrologic Thresholds and Critical Transitions in the Everglades Peatlands

    Science.gov (United States)

    Heffernan, J. B.; Ross, M. S.; Sah, J. P.; Isherwood, E.; Cohen, M. J.

    2015-12-01

    Spatial patterning occurs in a variety of ecosystems, and is important for the functional properties of landscapes; for testing spatial models of ecological processes; and as an indicator of landscape condition and resilience. Theory suggests that regular patterns arise from coupled local- and landscape-scale feedbacks that can also create multiple stable landscape states. In the Florida Everglades, hydrologic modification has degraded much of the historically-extensive ridge-slough landscape, a patterned peatland mosaic with distinct, flow-parallel patches. However, in the Everglades and in general, the hypothesis that patterned landscapes have homogeneous alternative states has little direct empirical support. Here we use microtopographic and vegetative heterogeneity, and their relation to hydrologic conditions, to infer the existence of multiple landscape equilibria and identify the hydrologic thresholds for critical transitions between these states. Dual relationships between elevation variance and water depth, and bi-modal distributions of both elevation variance and plant community distinctness, are consistent with generic predictions of multiple states, and covariation between these measures suggests that microtopography is the leading indicator of landscape degradation. Furthermore, a simple ecohydrologic multiple-state model correctly predicts the hydrologic thresholds for persistence of distinct ridges and sloughs. Predicted ridge-slough elevation differences and their relation to water depth are much greater than observed in the contemporary Everglades, but correspond closely with historical observations of pre-drainage conditions. These multiple lines of evidence represent the broadest and most direct support for the link between regular spatial pattern and landscape-scale alternative states in any ecosystem, and suggest that other patterned landscapes could undergo sudden collapse in response to changing environmental conditions. Hydrologic thresholds

  7. Quantum noise and spatio-temporal pattern formation in nonlinear optics

    DEFF Research Database (Denmark)

    Bache, Morten

    2002-01-01

    rise to spatially modulated structures, patterns. The two main parts of the thesis are the classical model and the quantum mechanical model, the latter being an extension of the former by including the inherent quantum fluctuations of light. From a theoretical point of view the classical dynamics......-harmonic field, and the distinct peaks at the critical wave numbers reveal a quantum image. A microscopical model is suggested as a guide to understanding the processes involved in producing a classical pattern. Finally, the quantum nature of the correlations leads to spatial multimode nonclassical light, which...

  8. Protein-DNA interactions define the mechanistic aspects of circle formation and insertion reactions in IS2 transposition

    Directory of Open Access Journals (Sweden)

    Lewis Leslie A

    2012-01-01

    Full Text Available Abstract Background Transposition in IS3, IS30, IS21 and IS256 insertion sequence (IS families utilizes an unconventional two-step pathway. A figure-of-eight intermediate in Step I, from asymmetric single-strand cleavage and joining reactions, is converted into a double-stranded minicircle whose junction (the abutted left and right ends is the substrate for symmetrical transesterification attacks on target DNA in Step II, suggesting intrinsically different synaptic complexes (SC for each step. Transposases of these ISs bind poorly to cognate DNA and comparative biophysical analyses of SC I and SC II have proven elusive. We have prepared a native, soluble, active, GFP-tagged fusion derivative of the IS2 transposase that creates fully formed complexes with single-end and minicircle junction (MCJ substrates and used these successfully in hydroxyl radical footprinting experiments. Results In IS2, Step I reactions are physically and chemically asymmetric; the left imperfect, inverted repeat (IRL, the exclusive recipient end, lacks donor function. In SC I, different protection patterns of the cleavage domains (CDs of the right imperfect inverted repeat (IRR; extensive in cis and IRL (selective in trans at the single active cognate IRR catalytic center (CC are related to their donor and recipient functions. In SC II, extensive binding of the IRL CD in trans and of the abutted IRR CD in cis at this CC represents the first phase of the complex. An MCJ substrate precleaved at the 3' end of IRR revealed a temporary transition state with the IRL CD disengaged from the protein. We propose that in SC II, sequential 3' cleavages at the bound abutted CDs trigger a conformational change, allowing the IRL CD to complex to its cognate CC, producing the second phase. Corroborating data from enhanced residues and curvature propensity plots suggest that CD to CD interactions in SC I and SC II require IRL to assume a bent structure, to facilitate binding in trans

  9. Protein-DNA interactions define the mechanistic aspects of circle formation and insertion reactions in IS2 transposition

    Science.gov (United States)

    2012-01-01

    Background Transposition in IS3, IS30, IS21 and IS256 insertion sequence (IS) families utilizes an unconventional two-step pathway. A figure-of-eight intermediate in Step I, from asymmetric single-strand cleavage and joining reactions, is converted into a double-stranded minicircle whose junction (the abutted left and right ends) is the substrate for symmetrical transesterification attacks on target DNA in Step II, suggesting intrinsically different synaptic complexes (SC) for each step. Transposases of these ISs bind poorly to cognate DNA and comparative biophysical analyses of SC I and SC II have proven elusive. We have prepared a native, soluble, active, GFP-tagged fusion derivative of the IS2 transposase that creates fully formed complexes with single-end and minicircle junction (MCJ) substrates and used these successfully in hydroxyl radical footprinting experiments. Results In IS2, Step I reactions are physically and chemically asymmetric; the left imperfect, inverted repeat (IRL), the exclusive recipient end, lacks donor function. In SC I, different protection patterns of the cleavage domains (CDs) of the right imperfect inverted repeat (IRR; extensive in cis) and IRL (selective in trans) at the single active cognate IRR catalytic center (CC) are related to their donor and recipient functions. In SC II, extensive binding of the IRL CD in trans and of the abutted IRR CD in cis at this CC represents the first phase of the complex. An MCJ substrate precleaved at the 3' end of IRR revealed a temporary transition state with the IRL CD disengaged from the protein. We propose that in SC II, sequential 3' cleavages at the bound abutted CDs trigger a conformational change, allowing the IRL CD to complex to its cognate CC, producing the second phase. Corroborating data from enhanced residues and curvature propensity plots suggest that CD to CD interactions in SC I and SC II require IRL to assume a bent structure, to facilitate binding in trans. Conclusions Different

  10. Reproductive and post-embryonic daily rhythm patterns of the malaria vector Anopheles (Kerteszia) cruzii: aspects of the life cycle.

    Science.gov (United States)

    Chahad-Ehlers, Samira; Lozovei, Ana Leuch; Marques, Mirian David

    2007-01-01

    Females of Anopheles (Kerteszia) cruzii, a sporadic malaria vector in some areas of the Atlantic Forest in south and southeastern Brazil, were captured and studied under controlled conditions. In the laboratory, daily observations were conducted in natural light-dark cycles at 25.1+/-0.6 degrees C and relative humidity 57-81%. Post-embryonic development, which comprises four larval instars and the pupa, was continuously observed, and its cycles, as well as temporal components of reproduction, were registered. A preliminary study on female longevity was also performed. Oviposition, ecdysis from the third and fourth instars larvae, and pupation were visually monitored over three consecutive days and the emergence of adults over four consecutive days. Results were analyzed by circular statistics, and the null hypothesis of the absence of rhythm was assessed by Rayleigh's test at the 5% significance level. From a total of 141 females captured, 113 (80.14%) survived and 79 (69.91%) were successfully fed on blood, offered at one of two time intervals, 09:00-10:30 h (morning) or 18:30-20:00 h (evening). A total of 36 females laid 1063 eggs in 65 oviposition episodes, and 18 females presented fragmented oviposition. The average duration from egg-laying until adult emergence was 30.71+/-3.57 days, the larval stage being the longest in the post-embryonic development. Egg-laying showed a daily rhythm, with a peak at 23:24+/-3:47 h, 2 to 5 h after sunset. The time of the blood meal did not shift the phase of the egg-laying rhythm. The last larval ecdysis, pupation, and adult emergence did not follow a 24 h rhythmic pattern. A description of temporal patterns of post-embryonic development, particularly in the case of vectors, can be an important tool in research to determine methods of control.

  11. Correlation between ability of biofilm formation with their responsible genes and MDR patterns in clinical and environmental Acinetobacter baumannii isolates.

    Science.gov (United States)

    Bardbari, Ali Mohammadi; Arabestani, Mohammad Reza; Karami, Manoochehr; Keramat, Fariba; Alikhani, Mohammad Yousef; Bagheri, Kamran Pooshang

    2017-07-01

    Acinetobacter baumannii potential to form biofilm and exhibit multiple antibiotic resistances may be responsible in its survival in hospital environment. Accordingly, our study was aimed to determine the correlation between ability of biofilm formation and the frequency of biofilm related genes with antibiotic resistance phenotypes, and also the categorization of their patterns in clinical and environmental isolates. A total of 75 clinical and 32 environmental strains of the A. baumannii were collected and identified via API 20NE. Antibiotic susceptibility was evaluated by disk diffusion and microdilution broth methods. Biofilm formation assay was performed by microtiter plate method. OXA types and biofilm related genes including BlaOXA-51, BlaOXA-23, BlaOXA-24, BlaOXA-58, bap, blaPER-1, and ompA were amplified by PCR. The rate of MDR A. baumannii in clinical isolates (100%) was higher than environmental (81.2%) isolates (p biofilm producers in clinical and environmental isolates were 31.2%-58.7%, respectively. In the clinical and environmental isolates, the frequencies of ompA, blaRER-1 and bap genes were 100%, 53.3%, 82.7% and 100%, 37.5%, 84.4% respectively. Statistical analysis revealed a significant correlation between the frequency of MDR isolates and biofilm formation ability (p = 0.008). The high frequency of antibiotype I would be indicated that an outbreak has been happened earlier and an endemic strain is currently being settled in the hospital environment. It would be suggested that if there was no difference in the frequency of pattern I and biofilm formation ability between clinical and environmental isolates, it is a critical point representing the higher risk of bacterial transmission from environment to the patients. The resulting data would be assisted in the improvement of disinfection strategies to better control of nosocomial infections. One dominant resistance pattern has shown among clinical and environmental isolates. The frequency of

  12. Influence of cell-to-cell variability on spatial pattern formation

    NARCIS (Netherlands)

    Greese, B.; Wester, K.; Bensch, R.; Ronneberger, O.; Timmer, J.; Huulskamp, M.; Fleck, C.

    2012-01-01

    Many spatial patterns in biology arise through differentiation of selected cells within a tissue, which is regulated by a genetic network. This is specified by its structure, parameterisation and the noise on its components and reactions. The latter, in particular, is not well examined because it is

  13. Pattern formation for a model of plankton allelopathy with cross-diffusion

    DEFF Research Database (Denmark)

    Tian, C.R.; Zhang, Lai; Lin, Z.G.

    2011-01-01

    In this paper, we develop a theoretical framework for investigating spatial patterns on plankton allelopathy with cross-diffusion. We show that under some conditions the cross-diffusion is able to induce the Turing instability, which is further confirmed by the numerical simulations. Moreover...

  14. Rhythmic pattern formations in gels and Matalon–Packter law: A ...

    Indian Academy of Sciences (India)

    Matalon–Packter law, which relates the spacing coefficient with the initial concentrations is reformulated removing many ambiguities and impractical parameters. Experimen- tal results are discussed to establish the significance of moving boundary concept in the diffusion controlled pattern forming systems. Keywords.

  15. Pattern Formation by Staphylococcus epidermidis via Droplet Evaporation on Micropillars Arrays at a Surface

    NARCIS (Netherlands)

    Susarrey Arce, A.; Gomez Marin, Alvaro; Massey, A.; Oknianska, A.; Diaz-Fernandez, Y.; Hernandez Sanchez, J.F.; Griffiths, E.; Gardeniers, Johannes G.E.; Snoeijer, Jacobus Hendrikus; Lohse, Detlef; Raval, R.

    2016-01-01

    We evaluate the effect of epoxy surface structuring on the evaporation of water droplets containing Staphylococcus epidermidis (S. epidermidis). During evaporation, droplets with S. epidermidis cells yield to complex wetting patterns such as the zipping-wetting1−3 and the coffee-stain effects.

  16. How pattern formation in ring networks of excitatory and inhibitory spiking neurons depends on the input current regime

    Science.gov (United States)

    Kriener, Birgit; Helias, Moritz; Rotter, Stefan; Diesmann, Markus; Einevoll, Gaute T.

    2014-01-01

    Pattern formation, i.e., the generation of an inhomogeneous spatial activity distribution in a dynamical system with translation invariant structure, is a well-studied phenomenon in neuronal network dynamics, specifically in neural field models. These are population models to describe the spatio-temporal dynamics of large groups of neurons in terms of macroscopic variables such as population firing rates. Though neural field models are often deduced from and equipped with biophysically meaningful properties, a direct mapping to simulations of individual spiking neuron populations is rarely considered. Neurons have a distinct identity defined by their action on their postsynaptic targets. In its simplest form they act either excitatorily or inhibitorily. When the distribution of neuron identities is assumed to be periodic, pattern formation can be observed, given the coupling strength is supracritical, i.e., larger than a critical weight. We find that this critical weight is strongly dependent on the characteristics of the neuronal input, i.e., depends on whether neurons are mean- or fluctuation driven, and different limits in linearizing the full non-linear system apply in order to assess stability. In particular, if neurons are mean-driven, the linearization has a very simple form and becomes independent of both the fixed point firing rate and the variance of the input current, while in the very strongly fluctuation-driven regime the fixed point rate, as well as the input mean and variance are important parameters in the determination of the critical weight. We demonstrate that interestingly even in “intermediate” regimes, when the system is technically fluctuation-driven, the simple linearization neglecting the variance of the input can yield the better prediction of the critical coupling strength. We moreover analyze the effects of structural randomness by rewiring individual synapses or redistributing weights, as well as coarse-graining on the formation of

  17. How pattern formation in ring networks of excitatory and inhibitoryspiking neurons depends on the input current regime

    Directory of Open Access Journals (Sweden)

    Birgit eKriener

    2014-01-01

    Full Text Available Pattern formation, i.e., the generation of an inhomogeneous spatial activity distribution in a dynamical system with translation invariant structure, is a well-studied phenomenon in neuronal network dynamics,specifically in neural field models. These are population models to describe the spatio-temporal dynamics of large groups of neurons in terms of macroscopic variables such as population firing rates. Though neural field models are often deduced from and equipped with biophysically meaningfulproperties, a direct mapping to simulations of individual spiking neuron populations is rarely considered. Neurons have a distinct identity defined by their action on their postsynaptic targets. In its simplest form they act either excitatorily or inhibitorily.When the distribution of neuron identities is assumed to be periodic, pattern formation can be observed, given the coupling strength is supercritical, i.e., larger than a critical weight. We find that this critical weight is strongly dependent on the characteristics of the neuronal input, i.e., depends on whether neurons are mean- orfluctuation driven, and different limits in linearizing the full non-linear system apply in order to assess stability.In particular, if neurons are mean-driven, the linearization has a very simple form and becomesindependent of both the fixed point firing rate and the variance of the input current, while in the very strongly fluctuation-driven regime the fixed point rate, as well as the input mean and variance areimportant parameters in the determination of the critical weight.We demonstrate that interestingly even in ``intermediate'' regimes, when the system is technically fluctuation-driven, the simple linearization neglecting the variance of the input can yield the better prediction of the critical couplingstrength. We moreover analyze the effects of structural randomness by rewiring individualsynapses or redistributing weights, as well as coarse-graining on pattern

  18. Phytoplankton aggregate formation: observations of patterns and mechanisms of cell sticking and the significance of exopolymeric material

    DEFF Research Database (Denmark)

    Kiørboe, Thomas; Hansen, Jorgen L. S.

    1993-01-01

    the potential for aggregate formation. In the laboratory, we examined variation in stickiness in five species of diatoms and two species of flagellates grown in batch cultures. We also investigated the production of particulate mucus by phytoplankton cells and its role in aggregate formation, and we studied...... the effects of solute exudates on cell stickiness. Four of the five diatoms investigated were significantly sticky, while one diatom and both of the flagellates were not sticky. Stickiness varied considerably within species. In the diatom Skeletonema costatum, the typical but not entirely consistent pattern...... was that stickiness decreased with age of the batch cultures. We were otherwise unable to establish consistent relationships between cell stickiness and the growth stage of the algae, environmental concentrations of inorganic nutrients, and abundances of suspended and epiphytic bacteria. We showed that the diatom S...

  19. Geochemical patterns and microbial contribution to iron plaque formation in the rice plant rhizosphere

    Science.gov (United States)

    Maisch, Markus; Murata, Chihiro; Unger, Julia; Kappler, Andreas; Schmidt, Caroline

    2015-04-01

    Rice is the major food source for more than half of the world population and 80 percent of the worldwide rice cultivation is performed on water logged paddy soils. The establishment of reducing conditions in the soil and across the soil-water interface not only stimulates the microbial production and release of the greenhouse gas methane. These settings also create optimal conditions for microbial iron(III) reduction and therefore saturate the system with reduced ferrous iron. Through the reduction and dissolution of ferric minerals that are characterized by their high surface activity, sorbed nutrients and contaminants (e.g. arsenic) will be mobilized and are thus available for uptake by plants. Rice plants have evolved a strategy to release oxygen from their roots in order to prevent iron toxification in highly ferrous environments. The release of oxygen to the reduced paddy soil causes ferric iron plaque formation on the rice roots and finally increases the sorption capacity for toxic metals. To this date the geochemical and microbiological processes that control the formation of iron plaque are not deciphered. It has been hypothesized that iron(II)-oxidizing bacteria play a potential role in the iron(III) mineral formation along the roots. However, not much is known about the actual processes, mineral products, and geochemical gradients that establish within the rhizosphere. In the present study we have developed a growth set-up that allows the co-cultivation of rice plants and iron(II)-oxidizing bacteria, as well as the visual observation and in situ measurement of geochemical parameters. Oxygen and dissolved iron(II) gradients have been measured using microelectrodes and show geochemical hot spots that offer optimal growth conditions for microaerophilic iron(II) oxidizers. First mineral identification attempts of iron plaque have been performed using Mössbauer spectroscopy and microscopy. The obtained results on mineraology and crystallinity have been

  20. From crater functions to partial differential equations: a new approach to ion bombardment induced nonequilibrium pattern formation.

    Science.gov (United States)

    Norris, Scott A; Brenner, Michael P; Aziz, Michael J

    2009-06-03

    We develop a methodology for deriving continuum partial differential equations for the evolution of large-scale surface morphology directly from molecular dynamics simulations of the craters formed from individual ion impacts. Our formalism relies on the separation between the length scale of ion impact and the characteristic scale of pattern formation, and expresses the surface evolution in terms of the moments of the crater function. We demonstrate that the formalism reproduces the classical Bradley-Harper results, as well as ballistic atomic drift, under the appropriate simplifying assumptions. Given an actual set of converged molecular dynamics moments and their derivatives with respect to the incidence angle, our approach can be applied directly to predict the presence and absence of surface morphological instabilities. This analysis represents the first work systematically connecting molecular dynamics simulations of ion bombardment to partial differential equations that govern topographic pattern-forming instabilities.

  1. Predicting the distribution of spiral waves from cell properties in a developmental-path model of Dictyostelium pattern formation.

    Directory of Open Access Journals (Sweden)

    Daniel Geberth

    2009-07-01

    Full Text Available The slime mold Dictyostelium discoideum is one of the model systems of biological pattern formation. One of the most successful answers to the challenge of establishing a spiral wave pattern in a colony of homogeneously distributed D. discoideum cells has been the suggestion of a developmental path the cells follow (Lauzeral and coworkers. This is a well-defined change in properties each cell undergoes on a longer time scale than the typical dynamics of the cell. Here we show that this concept leads to an inhomogeneous and systematic spatial distribution of spiral waves, which can be predicted from the distribution of cells on the developmental path. We propose specific experiments for checking whether such systematics are also found in data and thus, indirectly, provide evidence of a developmental path.

  2. Studying the optical second-order interference pattern formation process with classical light in the photon counting regime.

    Science.gov (United States)

    He, Yuchen; Liu, Jianbin; Zhang, Songlin; Wang, Wentao; Bai, Bin; Le, Mingnan; Xu, Zhuo

    2015-12-01

    The formation process of the second-order interference pattern is studied experimentally in the photon counting regime by superposing two independent single-mode continuous-wave lasers. Two-photon interference based on the superposition principle in Feynman's path integral theory is employed to interpret the experimental results. The second-order interference pattern of classical light can be formulated when, with high probability, there are only two photons in the interferometer at one time. The studies are helpful in understanding the second-order interference of classical light in the language of photons. The method and conclusions can be generalized to the third- and higher-order interference of light and interference of massive particles.

  3. Radiographic evaluation and unusual bone formations in different genetic patterns in synpolydactyly

    Energy Technology Data Exchange (ETDEWEB)

    Yucel, Aylin; Acar, Murat [Afyon Kocatepe University School of Medicine, Department of Radiology, Afyon (Turkey); Kuru, Ilhami; Bozan, M. Eray [Afyon Kocatepe University School of Medicine, Department of Orthopaedics, Afyon (Turkey); Solak, Mustafa [Afyon Kocatepe University School of Medicine, Department of Genetics, Afyon (Turkey)

    2005-08-01

    To compare the radiological findings of heterozygous and homozygous subjects with synpolydactyly (SPD) and to discuss their unusual bone formations. Families with hand and foot SPD were examined. Genetic analysis was performed with blood samples and the pedigree was constructed. The affected individuals, especially those with distinctive phenotypic features, were invited to our orthopaedics clinic for further diagnostic studies. All participants underwent detailed clinical and X-ray examinations. Of the invited patients, 16 (five female and 11 male; age range 4-37 years, mean age 10.75 years) were included in our study, and hand and foot radiographs were obtained. All subjects had bilateral hand radiographs (32 hands), and 14 had bilateral foot radiographs (28 feet). Genetic analysis revealed 12 heterozygote (75%) and four (25%) homozygote phenotypes. Among patients enrolled into the study nine (three homozygotes, six heterozygotes) had SPD of both hands and feet bilaterally (tetrasynpolydactyly). Six unusual bone formations were observed in the hands and feet: delta phalanx, delta metacarpal/metatarsal, kissing delta phalanx, true double epiphysis, pseudoepiphysis and cone-shaped epiphysis. There were major differences in radiological and clinical manifestations of homozygote and heterozygote phenotypes. The homozygous SPD presented with very distinctive unusual bone formations. The existence and variety of unusual bones may indicate the severity of penetrance and expressivity of SPD. (orig.)

  4. Regulation of Pattern Formation and Gene Amplification During Drosophila Oogenesis by the miR-318 microRNA

    DEFF Research Database (Denmark)

    Ge, Wanzhong; Deng, Qiannan; Guo, Ting

    2015-01-01

    Pattern formation during epithelial development requires the coordination of multiple signaling pathways. Here, we investigate the functions of an ovary-enriched miRNA, miR-318, in epithelial development during Drosophila oogenesis. miR-318 maternal loss-of-function mutants were female sterile...... signaling pathway activates expression of miR-318 and that miR-318 cooperates with Tramtrack69 (Ttk69) to control the switch from endocycling to chorion gene amplification during differentiation of the follicular epithelium. The multiple functions of miR-318 in oogenesis illustrate the importance of mi...

  5. First-passage times for pattern formation in nonlocal partial differential equations.

    Science.gov (United States)

    Cáceres, Manuel O; Fuentes, Miguel A

    2015-10-01

    We describe the lifetimes associated with the stochastic evolution from an unstable uniform state to a patterned one when the time evolution of the field is controlled by a nonlocal Fisher equation. A small noise is added to the evolution equation to define the lifetimes and to calculate the mean first-passage time of the stochastic field through a given threshold value, before the patterned steady state is reached. In order to obtain analytical results we introduce a stochastic multiscale perturbation expansion. This multiscale expansion can also be used to tackle multiplicative stochastic partial differential equations. A critical slowing down is predicted for the marginal case when the Fourier phase of the unstable initial condition is null. We carry out Monte Carlo simulations to show the agreement with our theoretical predictions. Analytic results for the bifurcation point and asymptotic analysis of traveling wave-front solutions are included to get insight into the noise-induced transition phenomena mediated by invading fronts.

  6. Formation of coffee-stain patterns at the nanoscale: The role of nanoparticle solubility and solvent evaporation rate

    Science.gov (United States)

    Zhang, Jianguo; Milzetti, Jasmin; Leroy, Frédéric; Müller-Plathe, Florian

    2017-03-01

    When droplets of nanoparticle suspension evaporate from surfaces, they leave behind a deposit of nanoparticles. The mechanism of evaporation-induced pattern formation in the deposit is studied by molecular dynamics simulations for sessile nanodroplets. The influence of the interaction between nanoparticles and liquid molecules and the influence of the evaporation rate on the final deposition pattern are addressed. When the nanoparticle-liquid interaction is weaker than the liquid-liquid interaction, an interaction-driven or evaporation-induced layer of nanoparticles appears at the liquid-vapor interface and eventually collapses onto the solid surface to form a uniform deposit independently of the evaporation rate. When the nanoparticle-liquid and liquid-liquid interactions are comparable, the nanoparticles are dispersed inside the droplet and evaporation takes place with the contact line pinned at a surface defect. In such a case, a pattern with an approximate ring-like shape is found with fast evaporation, while a more uniform distribution is observed with slower evaporation. When the liquid-nanoparticle interaction is stronger than the liquid-liquid interaction, evaporation always occurs with receding contact line. The final deposition pattern changes from volcano-like to pancake-like with decreasing evaporation rate. These findings might help to design nanoscale structures like nanopatterns or nanowires on surface through controlled solvent evaporation.

  7. Superhydrophobic Microporous Substrates via Photocuring: Coupling Optical Pattern Formation to Phase Separation for Process-Tunable Pore Architectures.

    Science.gov (United States)

    Biria, Saeid; Hosein, Ian D

    2018-01-24

    We present a new approach to synthesize microporous surfaces through the combination of photopolymerization-induced phase separation and light pattern formation in photopolymer-solvent mixtures. The mixtures are irradiated with a wide-area light pattern consisting of high and low intensity regions. This light pattern undergoes self-focusing and filamentation, thereby preserving its spatial profile through the mixture. Over the course of irradiation, the mixture undergoes phase separation, with the polymer and solvent located in the bright and dark regions of the light profile, respectively, to produce a binary phase morphology with a congruent arrangement as the optical pattern. A congruently arranged microporous structure is attained upon solvent removal. The microporous surface structure can be varied by changing the irradiating light profile via photomask design. The porous architecture can be further tuned through the relative weight fractions of photopolymer and solvent in the mixture, resulting in porosities ranging from those with discrete and uniform pore sizes to hierarchical pore distributions. All surfaces become superhydrophobic (water contact angles >150°) when spray-coated with a thin layer of polytetrafluoroethylene nanoparticles. The water contact angles can be enhanced by changing the surface porosity via the processing conditions. This is a scalable and tunable approach to precisely control microporous surface structure in thin films to create functional surfaces and antiwetting coatings.

  8. Pattern formation at multiple spatial scales drives the resilience of mussel bed ecosystems.

    Science.gov (United States)

    Liu, Quan-Xing; Herman, Peter M J; Mooij, Wolf M; Huisman, Jef; Scheffer, Marten; Olff, Han; van de Koppel, Johan

    2014-10-22

    Self-organized complexity at multiple spatial scales is a distinctive characteristic of biological systems. Yet, little is known about how different self-organizing processes operating at different spatial scales interact to determine ecosystem functioning. Here we show that the interplay between self-organizing processes at individual and ecosystem level is a key determinant of the functioning and resilience of mussel beds. In mussel beds, self-organization generates spatial patterns at two characteristic spatial scales: small-scale net-shaped patterns due to behavioural aggregation of individuals, and large-scale banded patterns due to the interplay of between-mussel facilitation and resource depletion. Model analysis reveals that the interaction between these behavioural and ecosystem-level mechanisms increases mussel bed resilience, enables persistence under deteriorating conditions and makes them less prone to catastrophic collapse. Our analysis highlights that interactions between different forms of self-organization at multiple spatial scales may enhance the intrinsic ability of ecosystems to withstand both natural and human-induced disturbances.

  9. Ecological aspects study of replacement intercropping patterns of Soybean (Glycine max L. and Millet (Panicum miliaceum L.

    Directory of Open Access Journals (Sweden)

    Goudarz Ahmadvand

    2016-03-01

    Full Text Available Intercropping is considered for increasing and stability of yield in per unit. In order to study the effects of soybean (Glycine max L. and millet (Panicum miliaceum L. replacement intercropping on agronomic traits, diversity of weeds and soil biological activity, an experiment was conducted at the Research Station of Agricultural Faculty, of Bu-Ali Sina University, in 2014. The experiment was carried out as a randomized complete block design with three replications. The replacement intercropping series consisted of monoculture of soybean, monoculture of millet, 75% soybean+ 25% millet, 50% soybean+ 50% millet and 25% soybean+ 75% millet. The results showed that the highest seed yield of 219.8 and 171.9 gm-2 belonged to monoculture of soybean and monoculture of millet, respectively. Intercropping reduced maximum leaf area index of soybean and millet but leaf chlorophyll content of soybean and millet were increased. The highest number of pods per plant, number of seeds per plant in soybean and panicle number per plant in millet were obtained in 50S:50M ratio. Mean soil respiration rate in intercropping treatments was 4 and 8 % higher than the monoculture of soybean and millet, respectively. Intercropping patterns of 50S:50M and 25S:75M were successful in reducing weed plant density and diversity in comparison with soybean monoculture. Results showed that in all intercropping treatments, land equivalent ratio was more than one. Maximum value of land equivalent ratio (2.20 was achieved in 50S:50M treatment. Soybean and millet intercropping at different levels of replacement, didn’t have actual yield loss. Calculating the aggressivity showed that millet was more dominate than soybean. The maximum relative crowding coefficient of soybean was observed in 75S:25M, however that of millet was obtained in 25S:75M and 50S:50M intercroppings indicating that millet is more competitor than soybean.

  10. Inside-out flowers of Lacandonia brasiliana (Triuridaceae) provide new insights into fundamental aspects of floral patterning.

    Science.gov (United States)

    Rudall, Paula J; Alves, Marccus; Sajo, Maria das Graças

    2016-01-01

    Background and Aims. A recently described Brazilian species, Lacandonia brasiliana, shares with its longer established putative sister species from Mexico, L. schismatica, inverted floral patterning (carpels surrounding stamens) that is almost unique among angiosperms. We present a detailed ontogenetic study of L. brasiliana for comparison with other members of the tribe Triurideae (Triuridaceae) to explore the possible evolutionary origins of "inside-out" flowers. Methods. Wild-source populations of L. brasiliana were compared morphologically and ontogenetically with related species of Triurideae, using light and scanning electron microscopy. Key Results. Relatively few morphological differences separate flowers of L. brasiliana and L. schismatica. Both species have tepals with late-developing subapical appendages. In both species, the three central (almost sessile) anthers develop precociously with respect to the carpels; the anthers remain closed, and fertilization is achieved via pollen-tube growth from germinating pollen grains of the same cleistogamous flower. Carpels are initiated on fascicles. Conclusions. The close similarity between the two Lacandonia species makes it unlikely that they arose independently from two separate homeotic transformation events; they could either represent sister species or two populations of a single disjunct species. Our study underlines the problematic generic and species boundaries within Triurideae. We present an evolutionary scenario of character evolution in Triuridaceae. The inside-out Lacandonia flower could have resulted from a stabilized homeotic transformation; this hypothesis is not in conflict with constrasting theories of the origin of the Triuridaceae flower, which coincided with a shift to unisexuality. The unisexual yet highly plastic flowers that are typical of Triuridaceae could have pre-adapted the origin of the extraordinary Lacandonia morphology.

  11. Inside-out flowers of Lacandonia brasiliana (Triuridaceae provide new insights into fundamental aspects of floral patterning

    Directory of Open Access Journals (Sweden)

    Paula J. Rudall

    2016-02-01

    Full Text Available Background and Aims. A recently described Brazilian species, Lacandonia brasiliana, shares with its longer established putative sister species from Mexico, L. schismatica, inverted floral patterning (carpels surrounding stamens that is almost unique among angiosperms. We present a detailed ontogenetic study of L. brasiliana for comparison with other members of the tribe Triurideae (Triuridaceae to explore the possible evolutionary origins of “inside-out” flowers. Methods. Wild-source populations of L. brasiliana were compared morphologically and ontogenetically with related species of Triurideae, using light and scanning electron microscopy. Key Results. Relatively few morphological differences separate flowers of L. brasiliana and L. schismatica. Both species have tepals with late-developing subapical appendages. In both species, the three central (almost sessile anthers develop precociously with respect to the carpels; the anthers remain closed, and fertilization is achieved via pollen-tube growth from germinating pollen grains of the same cleistogamous flower. Carpels are initiated on fascicles. Conclusions. The close similarity between the two Lacandonia species makes it unlikely that they arose independently from two separate homeotic transformation events; they could either represent sister species or two populations of a single disjunct species. Our study underlines the problematic generic and species boundaries within Triurideae. We present an evolutionary scenario of character evolution in Triuridaceae. The inside-out Lacandonia flower could have resulted from a stabilized homeotic transformation; this hypothesis is not in conflict with constrasting theories of the origin of the Triuridaceae flower, which coincided with a shift to unisexuality. The unisexual yet highly plastic flowers that are typical of Triuridaceae could have pre-adapted the origin of the extraordinary Lacandonia morphology.

  12. Two-dimensional pattern formation using graphoepitaxy of PS-b-PMMA block copolymers for advanced FinFET device and circuit fabrication.

    Science.gov (United States)

    Tsai, Hsinyu; Pitera, Jed W; Miyazoe, Hiroyuki; Bangsaruntip, Sarunya; Engelmann, Sebastian U; Liu, Chi-Chun; Cheng, Joy Y; Bucchignano, James J; Klaus, David P; Joseph, Eric A; Sanders, Daniel P; Colburn, Matthew E; Guillorn, Michael A

    2014-05-27

    Directed self-assembly (DSA) of lamellar phase block-co-polymers (BCPs) can be used to form nanoscale line-space patterns. However, exploiting the potential of this process for circuit relevant patterning continues to be a major challenge. In this work, we propose a way to impart two-dimensional pattern information in graphoepitaxy-based lamellar phase DSA processes by utilizing the interactions of the BCP with the template pattern. The image formation mechanism is explained through the use of Monte Carlo simulations. Circuit patterns consisting of the active region of Si FinFET transistors, referred to as Si "fins", were fabricated to demonstrate the applicability of this technique to the formation of complex patterns. The quality of the Si fin features produced by this process was validated by demonstrating the first functional DSA-patterned FinFET devices with 29 nm-pitch fins.

  13. Segregation and pattern formation in dilute granular media under microgravity conditions.

    Science.gov (United States)

    Opsomer, Eric; Noirhomme, Martial; Vandewalle, Nicolas; Falcon, Eric; Merminod, Simon

    2017-01-01

    Space exploration and exploitation face a major challenge: the handling of granular materials in low-gravity environments. Indeed, grains behave quite differently in space than on Earth, and the dissipative nature of the collisions between solid particles leads to clustering. Within poly-disperse materials, the question of segregation is highly relevant but has not been addressed so far in microgravity. From parabolic flight experiments on dilute binary granular media, we show that clustering can trigger a segregation mechanism, and we observe, for the first time, the formation of layered structures in the bulk.

  14. Pattern formation in singly resonant second-harmonic generation with competing parametric oscillation

    DEFF Research Database (Denmark)

    Lodahl, P.; Saffman, M.

    1999-01-01

    fundamental field, and its coupling to a pair of nondegenerate parametric fields. The parametric fields are driven by the nonresonant second-harmonic field. Analysis indicates the existence of transverse instability of the pump field alone, as well as the possibility of simultaneous instability of the pump......We theoretically investigate the generation of spatial patterns in intracavity second-harmonic generation. We consider a cavity with planar mirrors that is resonant at the fundamental frequency, but not at the second-harmonic frequency. A mean-field model is derived that describes the resonant...

  15. Trust, responsibility, and freedom: Focus-group research on contemporary patterns of union formation in Russia

    Directory of Open Access Journals (Sweden)

    Olga Isupova

    2015-02-01

    Full Text Available Background: While some studies directly address the issue of changes in union formation in Russia and Eastern Europe, few have focused on attitudes and norms regarding marriage and cohabitation. In Russia cohabitation has risen sharply in the last decades, but recently its level has stabilized and even decreased slightly. Objective: We intend to highlight gender and educational differences in perceptions of the advantages and disadvantages of cohabitation vs. marriage. Methods: We conducted 8 focus groups in Moscow in January 2012 (4 with men, 4 with women, half with higher educated participants and half with lower educated participants. Results: Participants claimed that trust between men and women underlies preferences for marriage or cohabitation. Participants‟ religious beliefs form a 'three stages of union' theory: cohabitation in the beginning, civil marriage later when trust has developed, and finally a church wedding when trust is established. In union formation the participants‟ ideals are the values of responsibility, freedom, fidelity, and trust. The level of trust is highest for proponents of marriage and ideational cohabitors. People without a strong preference for a certain type of union have the lowest level of interpersonal trust. Conclusions: In a society that currently can be considered anomic, interpersonal trust was found to be the most important factor underlying expressed ideals in choice of union type. It takes different forms for adherents of marriage ("trust with closed eyes" and adherents of cohabitation ("trust with open eyes".

  16. Reactive Oxygen Species in Planarian Regeneration: An Upstream Necessity for Correct Patterning and Brain Formation

    Directory of Open Access Journals (Sweden)

    Nicky Pirotte

    2015-01-01

    Full Text Available Recent research highlighted the impact of ROS as upstream regulators of tissue regeneration. We investigated their role and targeted processes during the regeneration of different body structures using the planarian Schmidtea mediterranea, an organism capable of regenerating its entire body, including its brain. The amputation of head and tail compartments induces a ROS burst at the wound site independently of the orientation. Inhibition of ROS production by diphenyleneiodonium (DPI or apocynin (APO causes regeneration defaults at both the anterior and posterior wound sites, resulting in reduced regeneration sites (blastemas and improper tissue homeostasis. ROS signaling is necessary for early differentiation and inhibition of the ROS burst results in defects on the regeneration of the nervous system and on the patterning process. Stem cell proliferation was not affected, as indicated by histone H3-P immunostaining, fluorescence-activated cell sorting (FACS, in situ hybridization of smedwi-1, and transcript levels of proliferation-related genes. We showed for the first time that ROS modulate both anterior and posterior regeneration in a context where regeneration is not limited to certain body structures. Our results indicate that ROS are key players in neuroregeneration through interference with the differentiation and patterning processes.

  17. Cellular aspects of wood formation

    National Research Council Canada - National Science Library

    Fromm, Jörg

    2013-01-01

    With today's ever growing economic and ecological problems, wood as a raw material takes on increasing significance as the most important renewable source of energy and as industrial feedstock for numerous products...

  18. The Roles of the Sole Activator-Type Auxin Response Factor in Pattern Formation of Marchantia polymorpha.

    Science.gov (United States)

    Kato, Hirotaka; Kouno, Masaru; Takeda, Mayuko; Suzuki, Hidemasa; Ishizaki, Kimitsune; Nishihama, Ryuichi; Kohchi, Takayuki

    2017-10-01

    Cell division patterning is important to determine body shape in plants. Nuclear auxin signaling mediated by AUXIN RESPONSE FACTOR (ARF) transcription factors affects plant growth and development through regulation of cell division, elongation and differentiation. The evolutionary origin of the ARF-mediated pathway dates back to at least the common ancestor of bryophytes and other land plants. The liverwort Marchantia polymorpha has three phylogenetically distinct ARFs: MpARF1, the sole 'activator' ARF; and MpARF2 and MpARF3, two 'repressor' ARFs. Genetic screens for auxin-resistant mutants revealed that loss of MpARF1 function conferred auxin insensitivity. Mparf1 mutants showed reduced auxin-inducible gene expression and various developmental defects, including thallus twisting and gemma malformation. We further investigated the role of MpARF1 in gemma development, which is traceable at the cellular level. In wild-type plants, a gemma initial first undergoes several transverse divisions to generate a single-celled stalk and a gemma proper, followed by rather synchronous longitudinal divisions in the latter. Mparf1 mutants often contained multicelled stalks and showed defects in the execution and timing of the longitudinal divisions. While wild-type gemmae finally generate two meristem notches, Mparf1 gemmae displayed various numbers of ectopic meristems. These results suggest that MpARF1 regulates formative cell divisions and axis formation through auxin responses. The mechanism for activator ARF regulation of pattern formation may be shared in land plants and therefore important for the general acquisition of three-dimensional body plans. © The Author 2017. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

  19. High contrast periodic plasma pattern formation during the laser-induced breakdown in transparent dielectric

    Science.gov (United States)

    Gildenburg, V. B.; Pavlichenko, I. A.

    2017-12-01

    Based on a simple 1D initial-time model, we have carried out the numerical simulation for the spatio-temporal evolution of femtosecond laser pulse induced breakdown in transparent dielectric (fused silica) at the nonlinear stage of the plasma resonance ionization instability. The instability develops from very small seed perturbations of the medium permittivity and results in, because of the strong mutual enhancement of the electric field and plasma density perturbations in the plasma resonance region, the formation of the subwavelength periodic plasma-field structure consisting of the overcritical plasma layers perpendicular to the laser polarization. The calculation of the time-course and spatial profiles of the plasma density, field amplitude, and energy deposition density in the medium during one breakdown pulse has allowed us to establish the main possible scenarios of the process considered and to found the laser intensity range where this process can underlie the nanograting modification of the medium by repeated pulses.

  20. On the Role of Physics in the Growth and Pattern Formation of Multi-Cellular Systems: What can we Learn from Individual-Cell Based Models?

    Science.gov (United States)

    Drasdo, Dirk; Hoehme, Stefan; Block, Michael

    2007-07-01

    We demonstrate that many collective phenomena in multi-cellular systems can be explained by models in which cells, despite their complexity, are represented as simple particles which are parameterized mainly by their physical properties. We mainly focus on two examples that nevertheless span a wide range of biological sub-disciplines: Unstructured cell populations growing in cell culture and growing cell layers in early animal development. While cultured unstructured cell populations would apriori been classified as particularly suited for a biophysical approach since the degree to which they are committed to a genetic program is expected to be modest, early animal development would be expected to mark the other extreme—here the degree of determinism according to a genetic program would be expected to be very high. We consider a number of phenomena such as the growth kinetics and spatial structure formation of monolayers and multicellular spheroids, the effect of the presence of another cell type surrounding the growing cell population, the effect of mutations and the critical surface dynamics of monolayers. Different from unstructured cell populations, cells in early development and at tissue interfaces usually form highly organized structures. An example are tissue layers. Under certain circumstances such layers are observed to fold. We show that folding pattern again can largely be explained by physical mechanisms either by a buckling instability or active cell shape changes. The paper combines new and published material and aims at an overview of a wide range of physical aspects in unstructured populations and growing tissue layers.

  1. Regular pattern formation on surface of aromatic polymers and its cytocompatibility

    Energy Technology Data Exchange (ETDEWEB)

    Michaljaničová, I. [Department of Solid State Engineering, University of Chemistry and Technology Prague, 166 28 Prague (Czech Republic); Slepička, P., E-mail: petr.slepicka@vscht.cz [Department of Solid State Engineering, University of Chemistry and Technology Prague, 166 28 Prague (Czech Republic); Rimpelová, S. [Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Technicka 5, Prague 6, 166 28 (Czech Republic); Slepičková Kasálková, N.; Švorčík, V. [Department of Solid State Engineering, University of Chemistry and Technology Prague, 166 28 Prague (Czech Republic)

    2016-05-01

    Highlights: • The nanopatterning technique of PES, PEI and PEEK with KrF laser was described. • Both nanodots and ripples on aromatic polymers were successfully constructed. • Dimensions of nanostructures can be precisely controlled. • Surface parameters dependent on angle of laser beam incidence were characterized. • U-2 OS cell adaptation and growth on nanopatterned surface was described. - Abstract: In this work, we describe ripple and dot nanopatterning of three different aromatic polymer substrates by KrF excimer laser treatment. The conditions for regular structures were established by laser fluence and number of pulses. Subsequently, the influence of the angle of incidence of a laser beam was investigated. We have chosen polyethersulfone (PES), polyetherimide (PEI) and polyetheretherketone (PEEK) as substrates for modification since they are thermally, chemically and mechanically resistant aromatic polymers with high absorption coefficients at excimer laser wavelength. As a tool of wettability investigation, we used contact angle measurement and for determination of the absorption edge, UV–vis spectroscopy was used. Material surface chemistry was analyzed using FTIR and the changes caused by modification were gained as differential spectra by subtraction of the spectra of non-modified material. Surface morphology was investigated by atomic force microscopy, also the roughness and surface area of modified samples were studied. The scans showed the formation of regular periodic structures, ripples and dots, after treatment by 8 and 16 mJ cm{sup −2} and 6000 pulses. Further, initial in vitro cytocompatibility tests were performed using U-2 OS cell line growing on PES samples subjected to scanning electron microscopy analysis. The structure formation mapping contributes strongly to development of new applications using nanostructured polymers, e.g. in tissue engineering or in combination with metallization in selected electronics and metamaterials

  2. Coupled Particle Transport and Pattern Formation in a Nonlinear Leaky-Box Model

    Science.gov (United States)

    Barghouty, A. F.; El-Nemr, K. W.; Baird, J. K.

    2009-01-01

    Effects of particle-particle coupling on particle characteristics in nonlinear leaky-box type descriptions of the acceleration and transport of energetic particles in space plasmas are examined in the framework of a simple two-particle model based on the Fokker-Planck equation in momentum space. In this model, the two particles are assumed coupled via a common nonlinear source term. In analogy with a prototypical mathematical system of diffusion-driven instability, this work demonstrates that steady-state patterns with strong dependence on the magnetic turbulence but a rather weak one on the coupled particles attributes can emerge in solutions of a nonlinearly coupled leaky-box model. The insight gained from this simple model may be of wider use and significance to nonlinearly coupled leaky-box type descriptions in general.

  3. Expression patterns and subcellular localization of carbonic anhydrases are developmentally regulated during tooth formation.

    Science.gov (United States)

    Reibring, Claes-Göran; El Shahawy, Maha; Hallberg, Kristina; Kannius-Janson, Marie; Nilsson, Jeanette; Parkkila, Seppo; Sly, William S; Waheed, Abdul; Linde, Anders; Gritli-Linde, Amel

    2014-01-01

    Carbonic anhydrases (CAs) play fundamental roles in several physiological events, and emerging evidence points at their involvement in an array of disorders, including cancer. The expression of CAs in the different cells of teeth is unknown, let alone their expression patterns during odontogenesis. As a first step towards understanding the role of CAs during odontogenesis, we used immunohistochemistry, histochemistry and in situ hybridization to reveal hitherto unknown dynamic distribution patterns of eight CAs in mice. The most salient findings include expression of CAII/Car2 not only in maturation-stage ameloblasts (MA) but also in the papillary layer, dental papilla mesenchyme, odontoblasts and the epithelial rests of Malassez. We uncovered that the latter form lace-like networks around incisors; hitherto these have been known to occur only in molars. All CAs studied were produced by MA, however CAIV, CAIX and CARPXI proteins were distinctly enriched in the ruffled membrane of the ruffled MA but exhibited a homogeneous distribution in smooth-ended MA. While CAIV, CAVI/Car6, CAIX, CARPXI and CAXIV were produced by all odontoblasts, CAIII distribution displayed a striking asymmetry, in that it was virtually confined to odontoblasts in the root of molars and root analog of incisors. Remarkably, from initiation until near completion of odontogenesis and in several other tissues, CAXIII localized mainly in intracellular punctae/vesicles that we show to overlap with LAMP-1- and LAMP-2-positive vesicles, suggesting that CAXIII localizes within lysosomes. We showed that expression of CAs in developing teeth is not confined to cells involved in biomineralization, pointing at their participation in other biological events. Finally, we uncovered novel sites of CA expression, including the developing brain and eye, the olfactory epithelium, melanoblasts, tongue, notochord, nucleus pulposus and sebaceous glands. Our study provides important information for future single or

  4. Expression patterns and subcellular localization of carbonic anhydrases are developmentally regulated during tooth formation.

    Directory of Open Access Journals (Sweden)

    Claes-Göran Reibring

    Full Text Available Carbonic anhydrases (CAs play fundamental roles in several physiological events, and emerging evidence points at their involvement in an array of disorders, including cancer. The expression of CAs in the different cells of teeth is unknown, let alone their expression patterns during odontogenesis. As a first step towards understanding the role of CAs during odontogenesis, we used immunohistochemistry, histochemistry and in situ hybridization to reveal hitherto unknown dynamic distribution patterns of eight CAs in mice. The most salient findings include expression of CAII/Car2 not only in maturation-stage ameloblasts (MA but also in the papillary layer, dental papilla mesenchyme, odontoblasts and the epithelial rests of Malassez. We uncovered that the latter form lace-like networks around incisors; hitherto these have been known to occur only in molars. All CAs studied were produced by MA, however CAIV, CAIX and CARPXI proteins were distinctly enriched in the ruffled membrane of the ruffled MA but exhibited a homogeneous distribution in smooth-ended MA. While CAIV, CAVI/Car6, CAIX, CARPXI and CAXIV were produced by all odontoblasts, CAIII distribution displayed a striking asymmetry, in that it was virtually confined to odontoblasts in the root of molars and root analog of incisors. Remarkably, from initiation until near completion of odontogenesis and in several other tissues, CAXIII localized mainly in intracellular punctae/vesicles that we show to overlap with LAMP-1- and LAMP-2-positive vesicles, suggesting that CAXIII localizes within lysosomes. We showed that expression of CAs in developing teeth is not confined to cells involved in biomineralization, pointing at their participation in other biological events. Finally, we uncovered novel sites of CA expression, including the developing brain and eye, the olfactory epithelium, melanoblasts, tongue, notochord, nucleus pulposus and sebaceous glands. Our study provides important information for

  5. Distinct patterns of notochord mineralization in zebrafish coincide with the localization of Osteocalcin isoform 1 during early vertebral centra formation

    Directory of Open Access Journals (Sweden)

    Bensimon-Brito Anabela

    2012-10-01

    Full Text Available Abstract Background In chondrichthyans, basal osteichthyans and tetrapods, vertebral bodies have cartilaginous anlagen that subsequently mineralize (chondrichthyans or ossify (osteichthyans. Chondrocytes that form the vertebral centra derive from somites. In teleost fish, vertebral centrum formation starts in the absence of cartilage, through direct mineralization of the notochord sheath. In a second step, the notochord is surrounded by somite-derived intramembranous bone. In several small teleost species, including zebrafish (Danio rerio, even haemal and neural arches form directly as intramembranous bone and only modified caudalmost arches remain cartilaginous. This study compares initial patterns of mineralization in different regions of the vertebral column in zebrafish. We ask if the absence or presence of cartilaginous arches influences the pattern of notochord sheath mineralization. Results To reveal which cells are involved in mineralization of the notochord sheath we identify proliferating cells, we trace mineralization on the histological level and we analyze cell ultrastructure by TEM. Moreover, we localize proteins and genes that are typically expressed by skeletogenic cells such as Collagen type II, Alkaline phosphatase (ALP and Osteocalcin (Oc. Mineralization of abdominal and caudal vertebrae starts with a complete ring within the notochord sheath and prior to the formation of the bony arches. In contrast, notochord mineralization of caudal fin centra starts with a broad ventral mineral deposition, associated with the bases of the modified cartilaginous arches. Similar, arch-related, patterns of mineralization occur in teleosts that maintain cartilaginous arches throughout the spine. Throughout the entire vertebral column, we were able to co-localize ALP-positive signal with chordacentrum mineralization sites, as well as Collagen II and Oc protein accumulation in the mineralizing notochord sheath. In the caudal fin region, ALP and

  6. Active turnover regulates pattern formation and stress transmission in disordered acto-myosin networks

    Science.gov (United States)

    McCall, Patrick; Stam, Samantha; Kovar, David; Gardel, Margaret

    The shape and mechanics of animal cells are controlled by a dynamic, thin network of semiflexible actin filaments and myosin-II motor proteins called the actomyosin cortex. Motor-generated stresses in the cortex drive changes in cell shape during cell division and morphogenesis, while dynamic turnover of actin filaments dissipates stress. The relative effects that force generation, force dissipation, and disassembly and reassembly of material have on motion in these networks are unknown. We find that cross-linked actin networks in vitro contract under myosin-generated stresses, resulting in partial filament disassembly, the formation of asters, and clustering of myosin motors. We observe a rapid restoration of uniform polymer density in the presence of the assembly factors which catalyze network turnover through elongation of severed actin filaments. When severing is accelerated further by the addition of a severing protein, network contraction and motor clustering are dramatically suppressed. We test the relative effects of material regeneration and force transmission using image analysis, and conclude that the dominant mechanism for this effect is relatively short-lived stresses that do not propagate over considerable distance or push network deformation into the nonlinear contractile regime we have previously characterized. Our results present a framework to understand cytoskeletal active matter that are influenced by a complex interplay between stress generation, network reorganization, and polymer turnover.

  7. Patterns of heteroduplex formation associated with the initiation of meiotic recombination in the yeast Saccharomyces cerevisiae.

    Science.gov (United States)

    Merker, Jason D; Dominska, Margaret; Petes, Thomas D

    2003-09-01

    The double-strand break repair (DSBR) model of recombination predicts that heteroduplexes will be formed in regions that flank the double-strand break (DSB) site and that the resulting intermediate is resolved to generate either crossovers or noncrossovers for flanking markers. Previous studies in Saccharomyces cerevisiae, however, failed to detect heteroduplexes on both sides of the DSB site. Recent physical studies suggest that some recombination events involve heterodupex formation by a mechanism, synthesis-dependent strand annealing (SDSA), that is inherently asymmetric with respect to the DSB site and that leads exclusively to noncrossovers of flanking markers. Below, we demonstrate that many of the recombination events initiated at the HIS4 recombination hotspot are consistent with a variant of the DSBR model in which the extent of heteroduplex on one side of the DSB site is much greater than that on the other. Events that include only one flanking marker in the heteroduplex (unidirectional events) are usually resolved as noncrossovers, whereas events that include both flanking markers (bidirectional events) are usually resolved as crossovers. The unidirectional events may represent SDSA, consistent with the conclusions of others, although other possibilities are not excluded. We also show that the level of recombination reflects the integration of events initiated at several different DSB sites, and we identify a subset of gene conversion events that may involve break-induced replication (BIR) or repair of a double-stranded DNA gap.

  8. Pattern formation with repulsive soft-core interactions: Discrete particle dynamics and Dean-Kawasaki equation

    Science.gov (United States)

    Delfau, Jean-Baptiste; Ollivier, Hélène; López, Cristóbal; Blasius, Bernd; Hernández-García, Emilio

    2016-10-01

    Brownian particles interacting via repulsive soft-core potentials can spontaneously aggregate, despite repelling each other, and form periodic crystals of particle clusters. We study this phenomenon in low-dimensional situations (one and two dimensions) at two levels of description: by performing numerical simulations of the discrete particle dynamics and by linear and nonlinear analysis of the corresponding Dean-Kawasaki equation for the macroscopic particle density. Restricting to low dimensions and neglecting fluctuation effects, we gain analytical insight into the mechanisms of the instability leading to clustering which turn out to be the interplay among diffusion, the intracluster forces, and the forces between neighboring clusters. We show that the deterministic part of the Dean-Kawasaki equation provides a good description of the particle dynamics, including width and shape of the clusters and over a wide range of parameters, and analyze with weakly nonlinear techniques the nature of the pattern-forming bifurcation in one and two dimensions. Finally, we briefly discuss the case of attractive forces.

  9. Neural crest cells pattern the surface cephalic ectoderm during FEZ formation.

    Science.gov (United States)

    Hu, Diane; Marcucio, Ralph S

    2012-04-01

    Multiple fibroblast growth factor (Fgf) ligands are expressed in the forebrain and facial ectoderm, and vascular endothelial growth factor (VEGF) is expressed in the facial ectoderm. Both pathways activate the MAP kinase cascade and can be suppressed by SU5402. We placed a bead soaked in SU5402 into the brain after emigration of neural crest cells was complete. Within 24 hr we observed reduced pMEK and pERK staining that persisted for at least 48 hr. This was accompanied by significant apoptosis in the face. By day 15, the upper beaks were truncated. Molecular changes in the FNP were also apparent. Normally, Shh is expressed in the frontonasal ectodermal zone and controls patterned growth of the upper jaw. In treated embryos, Shh expression was reduced. Both the structural and molecular deficits were mitigated after transplantation of FNP-derived mesenchymal cells. Thus, mesenchymal cells actively participate in signaling interactions of the face, and the absence of neural crest cells in neurocristopathies may not be merely structural. Copyright © 2012 Wiley Periodicals, Inc.

  10. Pattern formation and stochastic motion of the zooplankton Daphnia in a light field

    Science.gov (United States)

    Ordemann, Anke; Balazsi, Gabor; Moss, Frank

    2003-07-01

    We extend our study of single and collective motions of the zooplankton Daphnia both in experiment and computer simulation. Daphnia, as well as many other prey animals, can be observed to swarm under certain circumstances as a protective behavior against predators. Daphnia swarms can be induced by an optical marker such as a vertical shaft of light, to which they are attracted. For low Daphnia densities we observe that individual Daphnia develop a circular motion around the optical marker, whereas for high densities we can reproducibly induce swarming Daphnia to carry out a vortex motion. To learn more about this circular pattern and the associated spontaneous symmetry breaking, the motion of single Daphnia, as well as swarms, is characterized with respect to the light shaft. A stochastic model based on experimental data is compared with the observed Daphnia behavior as well as with existing models for single agents and agent swarms performing a circular motion to reveal the essential ingredients for vortex motion to occur.

  11. Neural crest cells pattern the surface cephalic ectoderm during FEZ formation

    Science.gov (United States)

    Hu, Diane; Marcucio, Ralph S.

    2012-01-01

    Multiple Fibroblast growth factor (Fgf) ligands are expressed in the forebrain and facial ectoderm, and Vascular Endothelial Growth Factor (VEGF) is expressed in the facial ectoderm. Both pathways activate the MAP kinase cascade and can be suppressed by SU5402. We placed a bead soaked in SU5402 into the brain after emigration of neural crest cells was complete. Within 24 hours we observed reduced pMEK and pERK staining that persisted for at least 48 hours. This was accompanied by significant apoptosis in the face. By day 15 the upper beaks were truncated. Molecular changes in the FNP were also apparent. Normally, Shh is expressed in the Frontonasal Ectodermal Zone and controls patterned growth of the upper jaw. In treated embryos Shh expression was reduced. Both the structural and molecular deficits were mitigated after transplantation of FNP-derived mesenchymal cells. Thus, mesenchymal cells actively participate in signaling interactions of the face, and the absence of neural crest cells in neurocristopathies may not be merely structural. PMID:22411554

  12. Dependence of crystallite formation and preferential backbone orientations on the side chain pattern in PBDTTPD polymers

    KAUST Repository

    El Labban, Abdulrahman

    2014-11-26

    (Figure Presented) Alkyl substituents appended to the π-conjugated main chain account for the solution-processability and film-forming properties of most π-conjugated polymers for organic electronic device applications, including field-effect transistors (FETs) and bulk-heterojunction (BHJ) solar cells. Beyond film-forming properties, recent work has emphasized the determining role that side-chain substituents play on polymer self-assembly and thin-film nanostructural order, and, in turn, on device performance. However, the factors that determine polymer crystallite orientation in thin-films, implying preferential backbone orientation relative to the device substrate, are a matter of some debate, and these structural changes remain difficult to anticipate. In this report, we show how systematic changes in the side-chain pattern of poly(benzo[1,2-b:4,5-b′]dithiophene-alt-thieno[3,4-c]pyrrole-4,6-dione) (PBDTTPD) polymers can (i) influence the propensity of the polymer to order in the π-stacking direction, and (ii) direct the preferential orientation of the polymer crystallites in thin films (e.g., "face-on" vs "edge-on"). Oriented crystallites, specifically crystallites that are well-ordered in the π-stacking direction, are believed to be a key contributor to improved thin-film device performance in both FETs and BHJ solar cells.

  13. Magnetization control for bit pattern formation of spinel ferromagnetic oxides by Kr ion implantation

    Energy Technology Data Exchange (ETDEWEB)

    Kita, Eiji, E-mail: kita@bk.tsukuba.ac.jp; Suzuki, Kazuya Z.; Liu, Yang; Utsumi, Yuji; Morishita, Jumpei; Niizeki, Tomohiko; Yanagihara, Hideto [Institute of Applied Physics, University of Tsukuba, Tsukuba 305-8573 (Japan); Oshima, Daiki; Kato, Takeshi [Department of Quantum Engineering, Nagoya University, Chikusa-ku, Nagoya 464-8603 (Japan); Mibu, Ko [Graduate School of Engineering, Nagoya Institute of Technology, Nagoya 466-8555 (Japan)

    2014-05-07

    As a first step toward the development of bit-patterned magnetic media made of oxides, we investigated the effectiveness of magnetism control by Kr implantation in a typical spinel ferromagnetic oxide, Fe{sub 3}O{sub 4}. We implanted Kr ions accelerated at 30 kV on 13-nm-thick Fe{sub 3}O{sub 4} thin films at dosages of (1–40) × 10{sup 14} ions/cm{sup 2}. Magnetization decreased with increase in ion dosages and disappeared when irradiation was greater than 2 × 10{sup 15} ions/cm{sup 2} of Kr ions. These dosages are more than ten times smaller than that used in the N{sub 2} implantation for metallic and oxide ferromagnets. Both the temperature dependence of magnetization and the Mössbauer study suggest that the transition of Fe{sub 3}O{sub 4} from ferromagnetic to paramagnetic took place sharply due to Kr ion irradiation, which produces two-phase separation—ferromagnetic and nonmagnetic with insufficient dosage of Kr ions.

  14. Courtship display dynamics, iridescent structural color and nanostructural pattern formation in ocellated pheasants

    Science.gov (United States)

    Kane, Suzanne Amador; Dakin, Roslyn; Fang, Rui; Lu, Yabin

    Peacocks court females by tilting a fan-like array of feathers decorated with multicolored eyespots (ocelli). Previous research has shown that half of the variation in peacock mating success can be attributed to eyespot iridescence. Several closely-related pheasant species perform similar, but less complex, courtship displays using ocellated feathers with less complex coloration, patterns and underlying nanostructures. This study explores the relationship between the dynamics of male courtship behavior and optical properties and nanostructure of each species' iridescent feather ornaments. In particular, we examined videos of courting males and of individual feathers to measure how the angles used during displays compared to those corresponding to optimal eyespot reflected intensity and iridescent contrast. Bidirectional reflectance spectroscopy was used to measure how the spectrum of reflected light depends on the characteristic angles used during displays, and hence how displays stimulate the four classes of cones found in the color vision systems of these birds. This work reveals a close correlation between the complexity of the angular dependence of iridescent feather reflectance properties and that of the motions used by males of each species.

  15. Fish in a ring: spatio-temporal pattern formation in one-dimensional animal groups.

    Science.gov (United States)

    Abaid, Nicole; Porfiri, Maurizio

    2010-10-06

    In this work, we study the collective behaviour of fish shoals in annular domains. Shoal mates are modelled as self-propelled particles moving on a discrete lattice. Collective decision-making is determined by information exchange among neighbours. Neighbourhoods are specified using the perceptual limit and numerosity of fish. Fish self-propulsion and obedience to group decisions are described through random variables. Spatio-temporal schooling patterns are measured using coarse observables adapted from the literature on coupled oscillator networks and features of the time-varying network describing the fish-to-fish information exchange. Experiments on zebrafish schooling in an annular tank are used to validate the model. Effects of group size and obedience parameter on coarse observables and network features are explored to understand the implications of perceptual numerosity and spatial density on fish schooling. The proposed model is also compared with a more traditional metric model, in which the numerosity constraint is released and fish interactions depend only on physical configurations. Comparison shows that the topological regime on which the proposed model is constructed allows for interpreting characteristic behaviours observed in the experimental study that are not captured by the metric model.

  16. Bare bones pattern formation: a core regulatory network in varying geometries reproduces major features of vertebrate limb development and evolution.

    Directory of Open Access Journals (Sweden)

    Jianfeng Zhu

    Full Text Available BACKGROUND: Major unresolved questions regarding vertebrate limb development concern how the numbers of skeletal elements along the proximodistal (P-D and anteroposterior (A-P axes are determined and how the shape of a growing limb affects skeletal element formation. There is currently no generally accepted model for these patterning processes, but recent work on cartilage development (chondrogenesis indicates that precartilage tissue self-organizes into nodular patterns by cell-molecular circuitry with local auto-activating and lateral inhibitory (LALI properties. This process is played out in the developing limb in the context of a gradient of fibroblast growth factor (FGF emanating from the apical ectodermal ridge (AER. RESULTS: We have simulated the behavior of the core chondrogenic mechanism of the developing limb in the presence of an FGF gradient using a novel computational environment that permits simulation of LALI systems in domains of varying shape and size. The model predicts the normal proximodistal pattern of skeletogenesis as well as distal truncations resulting from AER removal. Modifications of the model's parameters corresponding to plausible effects of Hox proteins and formins, and of the reshaping of the model limb, bud yielded simulated phenotypes resembling mutational and experimental variants of the limb. Hypothetical developmental scenarios reproduce skeletal morphologies with features of fossil limbs. CONCLUSIONS: The limb chondrogenic regulatory system operating in the presence of a gradient has an inherent, robust propensity to form limb-like skeletal structures. The bare bones framework can accommodate ancillary gene regulatory networks controlling limb bud shaping and establishment of Hox expression domains. This mechanism accounts for major features of the normal limb pattern and, under variant geometries and different parameter values, those of experimentally manipulated, genetically aberrant and evolutionary early

  17. Bare bones pattern formation: a core regulatory network in varying geometries reproduces major features of vertebrate limb development and evolution.

    Science.gov (United States)

    Zhu, Jianfeng; Zhang, Yong-Tao; Alber, Mark S; Newman, Stuart A

    2010-05-28

    Major unresolved questions regarding vertebrate limb development concern how the numbers of skeletal elements along the proximodistal (P-D) and anteroposterior (A-P) axes are determined and how the shape of a growing limb affects skeletal element formation. There is currently no generally accepted model for these patterning processes, but recent work on cartilage development (chondrogenesis) indicates that precartilage tissue self-organizes into nodular patterns by cell-molecular circuitry with local auto-activating and lateral inhibitory (LALI) properties. This process is played out in the developing limb in the context of a gradient of fibroblast growth factor (FGF) emanating from the apical ectodermal ridge (AER). We have simulated the behavior of the core chondrogenic mechanism of the developing limb in the presence of an FGF gradient using a novel computational environment that permits simulation of LALI systems in domains of varying shape and size. The model predicts the normal proximodistal pattern of skeletogenesis as well as distal truncations resulting from AER removal. Modifications of the model's parameters corresponding to plausible effects of Hox proteins and formins, and of the reshaping of the model limb, bud yielded simulated phenotypes resembling mutational and experimental variants of the limb. Hypothetical developmental scenarios reproduce skeletal morphologies with features of fossil limbs. The limb chondrogenic regulatory system operating in the presence of a gradient has an inherent, robust propensity to form limb-like skeletal structures. The bare bones framework can accommodate ancillary gene regulatory networks controlling limb bud shaping and establishment of Hox expression domains. This mechanism accounts for major features of the normal limb pattern and, under variant geometries and different parameter values, those of experimentally manipulated, genetically aberrant and evolutionary early forms, with no requirement for an independent

  18. Inactivation of the Huntington's disease gene (Hdh impairs anterior streak formation and early patterning of the mouse embryo

    Directory of Open Access Journals (Sweden)

    Conlon Ronald A

    2005-08-01

    Full Text Available Abstract Background Huntingtin, the HD gene encoded protein mutated by polyglutamine expansion in Huntington's disease, is required in extraembryonic tissues for proper gastrulation, implicating its activities in nutrition or patterning of the developing embryo. To test these possibilities, we have used whole mount in situ hybridization to examine embryonic patterning and morphogenesis in homozygous Hdhex4/5 huntingtin deficient embryos. Results In the absence of huntingtin, expression of nutritive genes appears normal but E7.0–7.5 embryos exhibit a unique combination of patterning defects. Notable are a shortened primitive streak, absence of a proper node and diminished production of anterior streak derivatives. Reduced Wnt3a, Tbx6 and Dll1 expression signify decreased paraxial mesoderm and reduced Otx2 expression and lack of headfolds denote a failure of head development. In addition, genes initially broadly expressed are not properly restricted to the posterior, as evidenced by the ectopic expression of Nodal, Fgf8 and Gsc in the epiblast and T (Brachyury and Evx1 in proximal mesoderm derivatives. Despite impaired posterior restriction and anterior streak deficits, overall anterior/posterior polarity is established. A single primitive streak forms and marker expression shows that the anterior epiblast and anterior visceral endoderm (AVE are specified. Conclusion Huntingtin is essential in the early patterning of the embryo for formation of the anterior region of the primitive streak, and for down-regulation of a subset of dynamic growth and transcription factor genes. These findings provide fundamental starting points for identifying the novel cellular and molecular activities of huntingtin in the extraembryonic tissues that govern normal anterior streak development. This knowledge may prove to be important for understanding the mechanism by which the dominant polyglutamine expansion in huntingtin determines the loss of neurons in

  19. Czech alien flora and the historical pattern of its formation: what came first to Central Europe?

    Science.gov (United States)

    Pysek, Petr; Sádlo, Jirí; Mandák, Bohumil; Jarosík, Vojtech

    2003-03-01

    Temporal patterns of immigration to the country were analysed using 668 alien species in the flora of the Czech Republic for which the dates of the first record were available (64.8% of the total number of 1031 so-called neophytes, i.e. aliens introduced after the year 1500). After a period of initial slow increase lasting to the 1840s, the accumulation of neophytes over time could be best fitted by a linear model that explained 97% of the variance. The intensity of floristic research, which varied between periods, did not significantly affect the overall increase in the number of aliens. The effect of species traits on the year of introduction was evaluated, with continent of origin, introduction type (deliberate or accidental), life history, Grime's life strategy, onset of flowering, mode of dispersal and propagule size as explanatory variables. Species of European origin and CSR strategists arrived earlier than those with other origins and strategies. Deliberately introduced species appeared earlier than accidental arrivals, and those cultivated for utilitary reasons on average arrived earlier than ornamentals. Species capable of early flowering were remarkably more prevalent among early newcomers. A separate analysis of accidentally introduced American species also identified life history as a significant predictor of immigration time, with annuals being introduced earlier than biennials and perennials. The data contribute to an understanding of a crucial stage of the invasion process that has received little attention in the literature. The model "early alien" to Central Europe is a European species with a CSR strategy deliberately brought for cultivation as a utilitary plant. Once it escaped from cultivation, its establishment in the wild was favoured by its ability to flower early and, therefore, complete the life cycle.

  20. Yeast mating and image-based quantification of spatial pattern formation.

    Directory of Open Access Journals (Sweden)

    Christian Diener

    2014-06-01

    Full Text Available Communication between cells is a ubiquitous feature of cell populations and is frequently realized by secretion and detection of signaling molecules. Direct visualization of the resulting complex gradients between secreting and receiving cells is often impossible due to the small size of diffusing molecules and because such visualization requires experimental perturbations such as attachment of fluorescent markers, which can change diffusion properties. We designed a method to estimate such extracellular concentration profiles in vivo by using spatiotemporal mathematical models derived from microscopic analysis. This method is applied to populations of thousands of haploid yeast cells during mating in order to quantify the extracellular distributions of the pheromone α-factor and the activity of the aspartyl protease Bar1. We demonstrate that Bar1 limits the range of the extracellular pheromone signal and is critical in establishing α-factor concentration gradients, which is crucial for effective mating. Moreover, haploid populations of wild type yeast cells, but not BAR1 deletion strains, create a pheromone pattern in which cells differentially grow and mate, with low pheromone regions where cells continue to bud and regions with higher pheromone levels and gradients where cells conjugate to form diploids. However, this effect seems to be exclusive to high-density cultures. Our results show a new role of Bar1 protease regulating the pheromone distribution within larger populations and not only locally inside an ascus or among few cells. As a consequence, wild type populations have not only higher mating efficiency, but also higher growth rates than mixed MATa bar1Δ/MATα cultures. We provide an explanation of how a rapidly diffusing molecule can be exploited by cells to provide spatial information that divides the population into different transcriptional programs and phenotypes.

  1. A Dictyostelium SH2 adaptor protein required for correct DIF-1 signaling and pattern formation.

    Science.gov (United States)

    Sugden, Christopher; Ross, Susan; Annesley, Sarah J; Cole, Christian; Bloomfield, Gareth; Ivens, Alasdair; Skelton, Jason; Fisher, Paul R; Barton, Geoffrey; Williams, Jeffrey G

    2011-05-15

    Dictyostelium is the only non-metazoan with functionally analyzed SH2 domains and studying them can give insights into their evolution and wider potential. LrrB has a novel domain configuration with leucine-rich repeat, 14-3-3 and SH2 protein-protein interaction modules. It is required for the correct expression of several specific genes in early development and here we characterize its role in later, multicellular development. During development in the light, slug formation in LrrB null (lrrB-) mutants is delayed relative to the parental strain, and the slugs are highly defective in phototaxis and thermotaxis. In the dark the mutant arrests development as an elongated mound, in a hitherto unreported process we term dark stalling. The developmental and phototaxis defects are cell autonomous and marker analysis shows that the pstO prestalk sub-region of the slug is aberrant in the lrrB- mutant. Expression profiling, by parallel micro-array and deep RNA sequence analyses, reveals many other alterations in prestalk-specific gene expression in lrrB- slugs, including reduced expression of the ecmB gene and elevated expression of ampA. During culmination ampA is ectopically expressed in the stalk, there is no expression of ampA and ecmB in the lower cup and the mutant fruiting bodies lack a basal disc. The basal disc cup derives from the pstB cells and this population is greatly reduced in the lrrB- mutant. This anatomical feature is a hallmark of mutants aberrant in signaling by DIF-1, the polyketide that induces prestalk and stalk cell differentiation. In a DIF-1 induction assay the lrrB- mutant is profoundly defective in ecmB activation but only marginally defective in ecmA induction. Thus the mutation partially uncouples these two inductive events. In early development LrrB interacts physically and functionally with CldA, another SH2 domain containing protein. However, the CldA null mutant does not phenocopy the lrrB- in its aberrant multicellular development or

  2. Formation of wedge-like pattern on VLF spectrograms observed by DEMETER

    Science.gov (United States)

    Shklyar, David; Parrot, Michel; Chum, Jaroslav; Santolik, Ondrej; Titova, Elena

    2010-05-01

    The DEMETER satellite has almost circular polar orbit, with the altitude ~ 700 km. At middle latitudes, DEMETER typically stays in the region where the height-dependent variation of the lower hybrid resonance (LHR) frequency profile forms a trough, i.e. inside the so-called LHR waveguide. In this region, LHR phenomena reveal themselves most distinctly. A striking example of such phenomena is provided by wedge-like events (WLE) registered sometimes on overview VLF spectrograms (time duration ~ 2 minutes, frequency range 0 - 20 kHz) during thunderstorm activity. A characteristic feature of these spectrograms is the presence of unusual upper and lower cutoff frequencies. The upper cutoff frequency varies rapidly, approximately in proportion to L-3, where L is McIlwain parameter on the satellite orbit. On the contrary, the lower cutoff frequency is almost constant, so that the cutoffs cross at larger L. Between these cutoffs, which thus form a wedge, intense whistlers are observed, whereas only 0+ whistlers and, probably, ducted whistlers are found outside the cutoffs. We present numerous examples of such spectrograms, and explain the formation of wedge-like structures by the wave propagation features in the inner magnetosphere, and specific position of the satellite with respect to the LHR maximum. In general terms, this explanation is as follows. WLE consists of whistler mode waves originating from lightnings and, thus, is related to thunderstorm activity. The wedge as such is formed by quasi-resonance whistler waves that cannot propagate in the region where the wave frequency is below local LHR frequency. Then, the lower frequency cutoff is determined by the LHR maximum, as quasi-resonant waves with lower frequencies originating in opposite hemisphere do not reach the satellite due to LHR reflection above it. The appearance of an upper cutoff frequency is due to another feature of unducted VLF wave propagation, which consists in trajectories merging into a limiting

  3. Nano-scale pattern formation on the surface of HgCdTe produced by ion bombardment

    Energy Technology Data Exchange (ETDEWEB)

    Smirnov, A.B.; Gudymenko, A.I.; Kladko, V.P.; Korchevyi, A.A.; Savkina, R.K.; Sizov, F.F.; Udovitska, R.S. [V. Lashkaryov Institute of Semiconductor Physics, NAS of Ukraine, Kiev (Ukraine)

    2015-08-15

    Presented in this work are the results concerning formation of nano-scale patterns on the surface of a ternary compound Hg{sub 1-x}Cd{sub x}Te (x ∝ 0.223). Modification of this ternary chalcogenide semiconductor compound was performed using the method of oblique-incidence ion bombardment with silver ions, which was followed by low-temperature treatment. The energy and dose of implanted ions were 140 keV and 4.8 x 10{sup 13} cm{sup -2}, respectively. Atomic force microscopy methods were used for the surface topography characterization. The structural properties of MCT-based structure was analyzed using double and triple crystal X-ray diffraction to monitor the disorder and strain of the implanted region as a function of processing conditions. (copyright 2015 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  4. Introduction of the human AVPR1A gene substantially alters brain receptor expression patterns and enhances aspects of social behavior in transgenic mice

    Directory of Open Access Journals (Sweden)

    Rhonda Charles

    2014-08-01

    Full Text Available Central arginine vasopressin receptor 1A (AVPR1A modulates a wide range of behaviors, including stress management and territorial aggression, as well as social bonding and recognition. Inter- and intra-species variations in the expression pattern of AVPR1A in the brain and downstream differential behavioral phenotypes have been attributed to differences in the non-coding regions of the AVPR1A gene, including polymorphic elements within upstream regulatory areas. Gene association studies have suggested a link between AVPR1A polymorphisms and autism, and AVPR1A has emerged as a potential pharmacological target for treatment of social cognitive impairments and mood and anxiety disorders. To further investigate the genetic mechanism giving rise to species differences in AVPR1A expression patterns and associated social behaviors, and to create a preclinical mouse model useful for screening drugs targeting AVPR1A, we engineered and extensively characterized bacterial artificial chromosome (BAC transgenic mice harboring the entire human AVPR1A locus with the surrounding regulatory elements. Compared with wild-type animals, the humanized mice displayed a more widely distributed ligand-AVPR1A binding pattern, which overlapped with that of primates. Furthermore, humanized AVPR1A mice displayed increased reciprocal social interactions compared with wild-type animals, but no differences in social approach and preference for social novelty were observed. Aspects of learning and memory, specifically novel object recognition and spatial relocation recognition, were unaffected. The biological alterations in humanized AVPR1A mice resulted in the rescue of the prepulse inhibition impairments that were observed in knockout mice, indicating conserved functionality. Although further behavioral paradigms and additional cohorts need to be examined in humanized AVPR1A mice, the results demonstrate that species-specific variations in the genomic content of regulatory

  5. Speciated VOC emission inventory and spatial patterns of ozone formation potential in the Pearl River Delta, China.

    Science.gov (United States)

    Zheng, Junyu; Shao, Min; Che, Wenwei; Zhang, Lijun; Zhong, Liuju; Zhang, Yuanhang; Streets, David

    2009-11-15

    The Pearl River Delta region (PRD) of China has long suffered from severe ground-level ozone pollution. Knowledge of the sources of volatile organic compounds (VOCs) is essential for ozone chemistry. In this work, a speciated VOC emission inventory was established on the basis of updated emissions and local VOC source profiles. The top 10 species, in terms of ozone formation potentials (OFPs), consisted of isoprene, mp-xylene, toluene, ethylene, propene, o-xylene, 1,2,4-trimethylbenzene, 2-methyl-2-butene, 1-butene, and alpha-pinene. These species contributed only 35.9% to VOCs emissions but accounted for 64.1% of the OFP in the region. The spatial patterns of the VOC source inventory agreed well with city-based source apportionment results, especially for vehicle emissions and industry plus VOC product-related emissions. Mapping of the OFPs and measured ozone concentrations indicated that the formation of higher ozone in the south and southeast of the PRD region differed from that in the Conghua area, a remote area in the north of the PRD. We recommend that the priorities for the control of VOC sources include motorcycles, gasoline vehicles, and solvent use because of their larger OFP contributions.

  6. Regulation of pattern formation and gene amplification during Drosophila oogenesis by the miR-318 microRNA.

    Science.gov (United States)

    Ge, Wanzhong; Deng, Qiannan; Guo, Ting; Hong, Xin; Kugler, Jan-Michael; Yang, Xiaohang; Cohen, Stephen M

    2015-05-01

    Pattern formation during epithelial development requires the coordination of multiple signaling pathways. Here, we investigate the functions of an ovary-enriched miRNA, miR-318, in epithelial development during Drosophila oogenesis. mir-318 maternal loss-of-function mutants were female-sterile and laid eggs with abnormal morphology. Removal of mir-318 disrupted the dorsal-anterior follicle cell patterning, resulting in abnormal dorsal appendages. mir-318 mutant females also produced thin and fragile eggshells due to impaired chorion gene amplification. We provide evidence that the ecdysone signaling pathway activates expression of miR-318 and that miR-318 cooperates with Tramtrack69 to control the switch from endocycling to chorion gene amplification during differentiation of the follicular epithelium. The multiple functions of miR-318 in oogenesis illustrate the importance of miRNAs in maintaining cell fate and in promoting the developmental transition in the female follicular epithelium. Copyright © 2015 by the Genetics Society of America.

  7. A study of stitch line formation during high speed laser patterning of thin film indium tin oxide transparent electrodes

    Science.gov (United States)

    Harrison, Paul M.; Hay, Nick; Hand, Duncan P.

    2010-09-01

    High speed laser patterning of indium tin oxide thin films on glass is part of the production method used to produce transparent conductive electrodes for plasma display panels. Such a design consists of rows of repeating electrode structures which cover the active area of the display. Whilst the patterning process for such electrode structures exceeds the industrial acceptance criteria there are certain features that are yet to be fully understood. The visible line that occurs in-between two adjacent laser processed areas, commonly known as a stitch line, is one such feature. Previously published research claimed that the stitch line was caused by incomplete removal of the thin film however experimental results presented within this paper demonstrate that this cannot be the case and show that the stitch line is formed by redeposition of the plume of ablated material within the area of overlap with the previous pulse, and that heating of the sample by the second pulse plays a key role in stitch line formation.

  8. Investigation of spontaneous nanometer-scale pattern formation in lithium-containing A-site deficient perovskite oxides

    Science.gov (United States)

    Guiton, Beth Sara

    This dissertation describes the synthesis and structural characterization of a group of perovskite oxides which form spontaneous patterns on the nanometer length scale. The subject of the first area of study is the solid solution (Nd2/3-xLi3x)TiO3 which is found to spontaneously and periodically phase-separate, to form nanometer-scale superlattices in two-dimensions. The phases comprising both of the two end members are found to extend to the nanoscale, and as such this compound represents what is to our knowledge the first example of truly periodic phase separation in any inorganic solid. The compositions of the two phases are estimated to be (Nd 1/2Li1/2)TiO3 and Nd2/3TiO3; the ratio of these two end members and the periodicity of the superlattice is correspondingly tuned by choice of overall composition. The second area of study involves the synthesis of a range of new Li-containing perovskite oxides related to (Nd2/3-xLi3x)TiO 3 by substitution of Ti4+ on the B-site. These chemical substitutions lead to a change in the kinetics of formation---allowing the mechanism for phase separation to be probed---and to compounds which display a wide variety of different nanometer-scale patterns.

  9. Expression pattern of odontogenic ameloblast-associated and amelotin during formation and regeneration of the junctional epithelium.

    Science.gov (United States)

    Nishio, Clarice; Wazen, Rima; Kuroda, Shingo; Moffatt, Pierre; Nanci, Antonio

    2010-12-10

    The junctional epithelium (JE) adheres to the tooth surface, and seals off periodontal tissues from the oral environment. This incompletely differentiated epithelium is formed initially by the fusion of the reduced enamel organ with the oral epithelium (OE). Two proteins, odontogenic ameloblast-associated (ODAM) and amelotin (AMTN), have been identified in the JE. The objective of this study was to evaluate their expression pattern during formation and regeneration of the JE. Cytokeratin 14 was used as a differentiation marker for oral epithelial cells, and Ki67 for cell proliferation. Immunohistochemistry was carried out on erupting rat molars, and in regenerating JE following gingivectomy. In the reducing enamel organ and in established JE, ODAM and AMTN were present at the cell-tooth interface while only ODAM and CK14 were found throughout the JE. Both were also conspicuously present in cell clusters situated between the erupting tooth and OE. During JE regeneration, ODAM was detected first at the leading wound edge and then in the regenerating JE. Some cell clusters in the subjacent connective tissue were also positive for ODAM. AMTN appeared later and both AMTN and ODAM accumulated at the interface with the tooth. Cytokeratin 14 gradually appeared in the regenerating JE but the cell clusters showed variable labeling. Cells associated with JE formation and regeneration exhibited higher division activity than adjacent epithelial cells. These findings suggest that ODAM and AMTN have a role at the cell-tooth interface, and that ODAM is likely also implicated in cellular events during formation and regeneration of the JE.

  10. Vegetation pattern formation in semiarid systems induced by long-range competition in the absence of facilitation mechanisms.

    Science.gov (United States)

    Martinez-Garcia, Ricardo; Calabrese, Justin M.; Hernandez-Garcia, Emilio; Lopez, Cristobal

    2014-05-01

    and its range. When the finite range of the competitive interaction is considered used kernel functions with a finite range, whose Fourier transform may have negative values, patterns emerge in the system. This is a rather general condition if we consider the finite length of the roots responsible of long-range competition for water in plant ecosystems.Therefore, our findings support the notion that, under fairly broad conditions, only competition is required for patterns to occur and suggest that the role of short-range facilitation mechanisms may not be as fundamental to pattern formation as has previously been thought. REFERENCES: C.A. Klausmeier, Science, 284, 1826-1828 (1999). F. Borgogno, P. D'Odorico, F. Laio and L. Ridolfi, Reviews of Geophysics, 4, RG1005 (2009). R. Martinez-Garcia, J.M. Calabrese, and C. Lopez, Journal of Theoretical Biology, 333, 156-165 (2013). R. Martinez-Garcia, J. M. Calabrese, E. Hernandez-Garcia, and C. Lopez, Geophysical Research Letters, 40, 6143-6147,(2013).

  11. [The etiology of obsessive-compulsive disorder from the aspects of attachment theory, with special regard to perceived parental treatment, attachment patterns and emotion regulation difficulties].

    Science.gov (United States)

    Rejtô, Nóra; Papp, Gábor; Molnár, Judit

    The focus of our study was the etiology of obsessive-compulsive disorder from attachment aspects. Our aim was to examine the representations of perceived parental treatment, attachment patterns and the level of emotion regulation of people who suffer from obsessive-compulsive disorder. 223 people participated in our study. The clinical group consisted of 92 persons with obsessive-compulsive symptoms, while the control group involved 131 people without OC symptoms. In the study we used the Young Parenting Inventory, the Relationship Questionnaire, and the Difficulties in Emotion Regulation Scale. Besides we compiled a questionnaire based on the DSM-5 and a demographic questionnaire. Respondents could fill the questionnaires online. The clinical group is characterized by significantly higher toxic frustration of each five basic emotional needs than the control group. Specifically, in the case of people with OC smptoms the toxic parental treatments for Defectiveness/ Shame, Dependence/Incompetence, Enmeshment/Undeveloped self, Entitlement/Grandiosity, Approval-seeking/ Recognition-seeking, Negativity/Pessimism, Emotional inhibition, Unrelenting standards/Hypercriticalness and Punitiveness were significantly more frequent than in the control group. The OC group is also characterized by significantly lower rate of secure attachment style, while dismissive attachment style proved to be the most frequent attachment style among them. The OC group also struggle with significantly higher level of emotion regulation difficulties.

  12. Pattern formation at interfaces

    CERN Document Server

    Maier, Giulio; Nepomnyashchy, Alexander

    2010-01-01

    Applying modern nonlinear stability theory to problems of continuous media mechanics in the presence of interfaces, this text is relevant to materials science, chemical engineering, and heat transfer technologies, as well as to reaction-diffusion systems.

  13. Understanding Alliance Formation Patterns

    Science.gov (United States)

    2015-12-01

    thank my parents for their support and encouragement and for inspiring me to choose a career that I am proud of. As for Wael, thank you for being...defense pact between Armenia and Russia, which was signed on August 20, 2010, extending Russia’s permissible military presence in Armenia until 2044...regime type not authoritatively decisive. C. CAPABILITIES There is an important theoretical framework in international relations providing arguments

  14. Reconstructing spatial and temporal patterns of soil formation in an anthropogenic drift sand area in Northeastern Germany

    Science.gov (United States)

    Schneider, Anna; Hirsch, Florian; Raab, Thomas; Wechler, Klaus-Peter

    2015-04-01

    On the sandy deposits of the Weichselian glaciation, soils developed during periods of landscape stability are often conserved under windblown sand. The relatively diverse morphology of dune areas and the possibilities for dating the accumulation of windblown sediment offer good opportunities to improve the understanding of spatial and temporal patterns of soil formation. However, a mapping of the buried soils and surfaces is often limited to single outcrops. In the forefield of the open-cast mine Cottbus-Nord, archaeological excavations in an about 10 ha dune and drift sand area revealed widespread buried soils, mainly podzols, of different characteristics. Archaeological findings give evidence for the age of the buried surfaces. The densely spaced excavation trenches allow for reconstructing the distribution of fossil and recent soils in a high spatial resolution. We created and analyzed digital models of the recent surface and the buried soils using a combination of methods: To characterize the recent ground surface, we used microdrone-based photogrammetry, LIDAR-based elevation data and GPS. To create a digital model of the palaeosurface and the distribution of fossil soils, we used soil and sedimentological mapping along excavation trenches, mapping of the elevation of excavated palaeosurfaces, and prospection of the fossil soils by Ground Penetrating Radar. Our studies reveal a high vertical and horizontal heterogeneity of soils, with varying thicknesses of eluvial and illuvial horizons and varying degrees of organic compound and sesquioxide accumulation. First results reflect several phases of landscape development: i) the formation of a Late Pleistocene soil on fluvio-eolian deposits, ii) a fossilization by eolian sands which underwent intensive podsolization, and iii) a land use-induced eolian remobilization of the sands. The soil characteristics' spatial distribution in relation to surface morphology indicates a high relevance of lateral leachate

  15. Components, structure, biogenesis and function of the Hydra extracellular matrix in regeneration, pattern formation and cell differentiation.

    Science.gov (United States)

    Sarras, Michael P

    2012-01-01

    The body wall of Hydra is organized as an epithelial bilayer (ectoderm and endoderm) with an intervening extracellular matrix (ECM), termed mesoglea by early biologists. Morphological studies have determined that Hydra ECM is composed of two basal lamina layers positioned at the base of each epithelial layer with an intervening interstitial matrix. Molecular and biochemical analyses of Hydra ECM have established that it contains components similar to those seen in more complicated vertebrate species. These components include such macromolecules as laminin, type IV collagen, and various fibrillar collagens. These components are synthesized in a complicated manner involving cross-talk between the epithelial bilayer. Any perturbation to ECM biogenesis leads to a blockage in Hydra morphogenesis. Blockage in ECM/cell interactions in the adult polyp also leads to problems in epithelial transdifferentiation processes. In terms of biophysical parameters, Hydra ECM is highly flexible; a property that facilitates continuous movements along the organism's longitudinal and radial axis. This is in contrast to the more rigid matrices often found in vertebrates. The flexible nature of Hydra ECM can in part now be explained by the unique structure of the organism's type IV collagen and fibrillar collagens. This review will focus on Hydra ECM in regard to: 1) its general structure, 2) its molecular composition, 3) the biophysical basis for the flexible nature of Hydra's ECM, 4) the relationship of the biogenesis of Hydra ECM to regeneration of body form, and 5) the functional role of Hydra ECM during pattern formation and cell differentiation.

  16. Soil formation.

    NARCIS (Netherlands)

    Breemen, van N.; Buurman, P.

    1998-01-01

    Soil Formation deals with qualitative and quantitative aspects of soil formation (or pedogenesis) and the underlying chemical, biological, and physical processes. The starting point of the text is the process - and not soil classification. Effects of weathering and new formation of minerals,

  17. Nominal aspect

    DEFF Research Database (Denmark)

    Rijkhoff, Jan

    1991-01-01

    In a general way the notion 'aspect' can be defined as the way in which a property or relation is represented in some dimension. Two kinds of aspect can be distinguished: verbal and nominal aspect. The study of verbal aspect has a long tradition, but nominal aspect has only been introduced recently......, at least in the sense in which it is used here (Rijkhoff 1989b, 1990a, 1990b). After a brief look at the more familiar verbal aspects, each of the nominal aspects is discussed in some detail. Then the relevance of nominal aspect will be considered in connection with (i) certain 'number markers' (which...... will be analysed as nominal aspect markers below), (ii) noun-incorporation, and (iii) predicate nouns....

  18. Sedimentological aspects of four Lower-Paleozoic formations in the northern part of the province of León (Spain)

    NARCIS (Netherlands)

    Oele, E.

    1964-01-01

    This paper deals with the sedimentary structures and sedimentary petrography of the four lowermost formations of the Paleozoic as developed in the Northern part of the Province of León (Cantabrian Mountains, Spain). Three of the four formations have a detrital character, and one consists of

  19. AspectJ in action practical aspect-oriented programming

    CERN Document Server

    Laddad, Ramnivas

    2003-01-01

    A guide to aspect-oriented programming and the AspectJ language, this book provides code examples that enable quick implementation of functionality in a system. Thorough introductions to AOP and AspectJ will help developers learn or advance their knowledge of AspectJ. Examples of everyday situations in which AspectJ solutions can be applied, such as logging, policy enforcement, resource pooling, business logic, thread-safety, authentication and authorization, and transaction management are provided. In addition, design patterns and idioms are covered, as is business rule implementation. The latest technologies, such as JEES, JAAS, and log4j, are explained and connected with AspectJ.

  20. Study on Cultural Pattern and Human Migration along the Chinese Silk Road (Gansu-Qinghai Stretch): taking the Salar's Ethnic Formation and Development as an Example

    OpenAIRE

    PREVIATO, TOMMASO

    2013-01-01

    The present paper “Study on cultural pattern and human migration along the Chinese Silk Road (Gansu-Qinghai stretch): taking the Salar’s ethnic formation and development as an example” has a rather simple framework which unceasingly oscillates between structural analysis and historical narration. Starting from a cross-cultural perspective, it combines traditional historical insights and postmodern paradigms of conceiving history. It consists on three parts - concept definition, historical ...

  1. Biofunctionalization of silicone rubber with microgroove-patterned surface and carbon-ion implantation to enhance biocompatibility and reduce capsule formation.

    Science.gov (United States)

    Lei, Ze-Yuan; Liu, Ting; Li, Wei-Juan; Shi, Xiao-Hua; Fan, Dong-Li

    Silicone rubber implants have been widely used to repair soft tissue defects and deformities. However, poor biocompatibility can elicit capsule formation, usually resulting in prosthesis contracture and displacement in long-term usage. To overcome this problem, this study investigated the properties of silicone rubber materials with or without a microgroove-patterned surface and with or without carbon (C)-ion implantation. Atomic force microscopy, X-ray photoelectron spectroscopy, and a water contact angle test were used to characterize surface morphology and physicochemical properties. Cytocompatibility was investigated by a cell adhesion experiment, immunofluorescence staining, a Cell Counting Kit-8 assay, and scanning electron microscopy in vitro. Histocompatibility was evaluated by studying the inflammatory response and fiber capsule formation that developed after subcutaneous implantation in rats for 7 days, 15 days, and 30 days in vivo. Parallel microgrooves were found on the surfaces of patterned silicone rubber (P-SR) and patterned C-ion-implanted silicone rubber (PC-SR). Irregular larger peaks and deeper valleys were present on the surface of silicone rubber implanted with C ions (C-SR). The silicone rubber surfaces with microgroove patterns had stable physical and chemical properties and exhibited moderate hydrophobicity. PC-SR exhibited moderately increased dermal fibroblast cell adhesion and growth, and its surface microstructure promoted orderly cell growth. Histocompatibility experiments on animals showed that both the anti-inflammatory and antifibrosis properties of PC-SR were slightly better than those of the other materials, and there was also a lower capsular contracture rate and less collagen deposition around implants made from PC-SR. Although the surface chemical properties, dermal fibroblast cell growth, and cell adhesion were not changed by microgroove pattern modification, a more orderly cell arrangement was obtained, leading to enhanced

  2. Controlling the crack formation in inkjet-printed silver nanoparticle thin-films for high resolution patterning using intense pulsed light treatment

    Science.gov (United States)

    Gokhale, Pritesh; Mitra, Dana; Sowade, Enrico; Yoti Mitra, Kalyan; Leonel Gomes, Henrique; Ramon, Eloi; Al-Hamry, Ammar; Kanoun, Olfa; Baumann, Reinhard R.

    2017-12-01

    During the last years, intense pulsed light (IPL) processing has been employed and studied intensively for the drying and sintering of metal nanoparticle layers deposited by means of printing methods on flexible polymer substrates. IPL was found to be a very fast and substrate-gentle approach qualified for the field of flexible and large-area printed electronics, i.e. manufactured via roll-to-roll processing. In this contribution, IPL is used for the fine-patterning of printed silver nanoparticle layers. The patterning is obtained by induced and controlled crack formation in the thin silver layer due to the intense exposure of IPL. The crack formation is controlled by selection of the substrate material, the fine-tuning of the morphology of the silver layer and an application of a dielectric layer on top of the silver layer that acts as a stress concentrator. Careful optimization of the IPL parameters allowed to adjust the lateral width of the crack. This novel approach turned out to be a fast and reproducible high-resolution patterning process for multiple applications, e.g. to pattern the source-drain electrodes for all-inkjet-printed thin-film transistors.

  3. Mechanical Model of Geometric Cell and Topological Algorithm for Cell Dynamics from Single-Cell to Formation of Monolayered Tissues with Pattern

    Science.gov (United States)

    Kachalo, Sëma; Naveed, Hammad; Cao, Youfang; Zhao, Jieling; Liang, Jie

    2015-01-01

    Geometric and mechanical properties of individual cells and interactions among neighboring cells are the basis of formation of tissue patterns. Understanding the complex interplay of cells is essential for gaining insight into embryogenesis, tissue development, and other emerging behavior. Here we describe a cell model and an efficient geometric algorithm for studying the dynamic process of tissue formation in 2D (e.g. epithelial tissues). Our approach improves upon previous methods by incorporating properties of individual cells as well as detailed description of the dynamic growth process, with all topological changes accounted for. Cell size, shape, and division plane orientation are modeled realistically. In addition, cell birth, cell growth, cell shrinkage, cell death, cell division, cell collision, and cell rearrangements are now fully accounted for. Different models of cell-cell interactions, such as lateral inhibition during the process of growth, can be studied in detail. Cellular pattern formation for monolayered tissues from arbitrary initial conditions, including that of a single cell, can also be studied in detail. Computational efficiency is achieved through the employment of a special data structure that ensures access to neighboring cells in constant time, without additional space requirement. We have successfully generated tissues consisting of more than 20,000 cells starting from 2 cells within 1 hour. We show that our model can be used to study embryogenesis, tissue fusion, and cell apoptosis. We give detailed study of the classical developmental process of bristle formation on the epidermis of D. melanogaster and the fundamental problem of homeostatic size control in epithelial tissues. Simulation results reveal significant roles of solubility of secreted factors in both the bristle formation and the homeostatic control of tissue size. Our method can be used to study broad problems in monolayered tissue formation. Our software is publicly

  4. Mechanical model of geometric cell and topological algorithm for cell dynamics from single-cell to formation of monolayered tissues with pattern.

    Science.gov (United States)

    Kachalo, Sëma; Naveed, Hammad; Cao, Youfang; Zhao, Jieling; Liang, Jie

    2015-01-01

    Geometric and mechanical properties of individual cells and interactions among neighboring cells are the basis of formation of tissue patterns. Understanding the complex interplay of cells is essential for gaining insight into embryogenesis, tissue development, and other emerging behavior. Here we describe a cell model and an efficient geometric algorithm for studying the dynamic process of tissue formation in 2D (e.g. epithelial tissues). Our approach improves upon previous methods by incorporating properties of individual cells as well as detailed description of the dynamic growth process, with all topological changes accounted for. Cell size, shape, and division plane orientation are modeled realistically. In addition, cell birth, cell growth, cell shrinkage, cell death, cell division, cell collision, and cell rearrangements are now fully accounted for. Different models of cell-cell interactions, such as lateral inhibition during the process of growth, can be studied in detail. Cellular pattern formation for monolayered tissues from arbitrary initial conditions, including that of a single cell, can also be studied in detail. Computational efficiency is achieved through the employment of a special data structure that ensures access to neighboring cells in constant time, without additional space requirement. We have successfully generated tissues consisting of more than 20,000 cells starting from 2 cells within 1 hour. We show that our model can be used to study embryogenesis, tissue fusion, and cell apoptosis. We give detailed study of the classical developmental process of bristle formation on the epidermis of D. melanogaster and the fundamental problem of homeostatic size control in epithelial tissues. Simulation results reveal significant roles of solubility of secreted factors in both the bristle formation and the homeostatic control of tissue size. Our method can be used to study broad problems in monolayered tissue formation. Our software is publicly

  5. Mechanical Model of Geometric Cell and Topological Algorithm for Cell Dynamics from Single-Cell to Formation of Monolayered Tissues with Pattern

    KAUST Repository

    Kachalo, Sëma

    2015-05-14

    Geometric and mechanical properties of individual cells and interactions among neighboring cells are the basis of formation of tissue patterns. Understanding the complex interplay of cells is essential for gaining insight into embryogenesis, tissue development, and other emerging behavior. Here we describe a cell model and an efficient geometric algorithm for studying the dynamic process of tissue formation in 2D (e.g. epithelial tissues). Our approach improves upon previous methods by incorporating properties of individual cells as well as detailed description of the dynamic growth process, with all topological changes accounted for. Cell size, shape, and division plane orientation are modeled realistically. In addition, cell birth, cell growth, cell shrinkage, cell death, cell division, cell collision, and cell rearrangements are now fully accounted for. Different models of cell-cell interactions, such as lateral inhibition during the process of growth, can be studied in detail. Cellular pattern formation for monolayered tissues from arbitrary initial conditions, including that of a single cell, can also be studied in detail. Computational efficiency is achieved through the employment of a special data structure that ensures access to neighboring cells in constant time, without additional space requirement. We have successfully generated tissues consisting of more than 20,000 cells starting from 2 cells within 1 hour. We show that our model can be used to study embryogenesis, tissue fusion, and cell apoptosis. We give detailed study of the classical developmental process of bristle formation on the epidermis of D. melanogaster and the fundamental problem of homeostatic size control in epithelial tissues. Simulation results reveal significant roles of solubility of secreted factors in both the bristle formation and the homeostatic control of tissue size. Our method can be used to study broad problems in monolayered tissue formation. Our software is publicly

  6. Micro-patterned surfaces reduce bacterial colonization and biofilm formation in vitro: Potential for enhancing endotracheal tube designs

    National Research Council Canada - National Science Library

    May, Rhea M; Hoffman, Matthew G; Sogo, Melinda J; Parker, Albert E; O’Toole, George A; Brennan, Anthony B; Reddy, Shravanthi T

    2014-01-01

    .... A novel microscopic ordered surface topography, the Sharklet micro-pattern, has been shown to decrease surface attachment of numerous microorganisms, and may provide an alternative strategy for VAP...

  7. Extracellular-controlled breast cancer cell formation and growth using non-UV patterned hydrogels via optically-induced electrokinetics.

    Science.gov (United States)

    Liu, Na; Liang, Wenfeng; Liu, Lianqing; Wang, Yuechao; Mai, John D; Lee, Gwo-Bin; Li, Wen J

    2014-04-07

    The culturing of cancer cells on micropatterned substrates can provide insight into the factors of the extracellular environment that enable the control of cell growth. We report here a novel non-UV-based technique to quickly micropattern a poly-(ethylene) glycol diacrylate (PEGDA)-based hydrogel on top of modified glass substrates, which were then used to control the growth patterns of breast cancer cells. Previously, the fabrication of micropatterned substrates required relatively complicated steps, which made it impractical for researchers to rapidly and systematically investigate the effects of different cell growth patterns. The technique presented herein operates on the principle of optically-induced electrokinetics (OEKs) and uses computer-generated projection light patterns to dynamically pattern the hydrogel on a hydrogenated amorphous silicon (a-Si:H) thin-film, atop an indium tin oxide (ITO) glass substrate. This technique allows us to pattern lines, circles, pentagons, and more complex shapes in the hydrogel with line widths below 3 μm and thicknesses of up to 6 μm within 8 s by simply controlling the projected illumination pattern and applying an appropriate AC voltage between the two ITO glass substrates. After separating the glass substrates to expose the patterned hydrogel, we experimentally demonstrate that MCF-7 breast cancer cells will adhere to the bare a-Si:H surface, but not to the hydrogel patterned in various geometric shapes and sizes. Theoretical analysis and finite-element model simulations reveal that the dominant OEK forces in our technique are the dielectrophoresis (DEP) force and the electro-osmosis force, which enhance the photo-initiated cross-linking reaction in the hydrogel. Our preliminary cultures of breast cancer cells demonstrate that this reported technique could be applied to effectively confine the growth of cancer cells on a-Si:H surfaces and affect individual cell geometry during their growth.

  8. Characterization of Sheet Fracture Patterns in Polygonal-Jointed Lavas at Kokostick Butte, OR, and Mazama Ridge, WA: Investigation and Interpretation of Their Formation and Significance

    Science.gov (United States)

    Lodge, R. W.; Lescinsky, D. T.

    2006-12-01

    Polygonal joints in lava flows ("columns") are commonly equant leading to a model of formation associated with cooling in an isotropic stress field. This model, however, does not explain rectangular columns, sheet-like fractures, fractures with crosscutting relationships, and fractures with orientations other than perpendicular to the cooling surface. These fracture patterns are often observed at glaciated volcanoes. The presence of preferential fracture orientations suggests an applied stress component likely due to environmental conditions such as the presence of glaciers or flow dynamics such as down-slope settling or flow margin inflation. During this study we investigated the formation and significance of these non-equant fracture patterns to propose a model for their formation. These `abnormal' fracture patterns have not been discussed in the literature and may be important to better understanding the cooling conditions of such lava flows. To test these possibilities we studied Kokostick Butte dacite flow, OR (near South Sister), and Mazama Ridge andesite flow at Mount Rainier, WA. Both of these flows have well developed sheet-like fractures and display evidence of ice-contact during eruption and emplacement. Sheet fractures are long and continuous fractures that have perpendicular connecting fractures forming rectangular columns. The sheet-like fractures are largely parallel to each other on the exposure surface and the connecting fractures vary locally from primary fractures (associated with cooling toward flow interior) to secondary fractures (associated with cooling by water infiltration). Detailed measurements of fracture orientations and spacing were collected at Kokostick Butte and Mazama Ridge to examine the relationship between the sheet fractures and flow geometry. Preliminary results support this relationship and suggest these patterns likely form due to shear associated with small amounts of flow advance by the rapidly cooling lava. Laboratory

  9. Pattern formation in a two-component reaction-diffusion system with delayed processes on a network

    Science.gov (United States)

    Petit, Julien; Asllani, Malbor; Fanelli, Duccio; Lauwens, Ben; Carletti, Timoteo

    2016-11-01

    Reaction-diffusion systems with time-delay defined on complex networks have been studied in the framework of the emergence of Turing instabilities. The use of the Lambert W-function allowed us to get explicit analytic conditions for the onset of patterns as a function of the main involved parameters, the time-delay, the network topology and the diffusion coefficients. Depending on these parameters, the analysis predicts whether the system will evolve towards a stationary Turing pattern or rather to a wave pattern associated to a Hopf bifurcation. The possible outcomes of the linear analysis overcome the respective limitations of the single-species case with delay, and that of the classical activator-inhibitor variant without delay. Numerical results gained from the Mimura-Murray model support the theoretical approach.

  10. Self-organized pattern formation in the oxidation of supported iron thin films. II. A simulation study

    Science.gov (United States)

    Ogale, Abhijit S.

    2001-07-01

    The process of oxidation of supported iron thin films is modeled by casting it into the form of an activator-inhibitor system, with precursor oxidation state as the activator, and stress produced by the large density difference between the metal and its oxide as a fast-diffusing inhibitor. An activator-substrate mechanism also coexists due to the finite availability of iron. The redistribution of iron by diffusion via vacancies also indirectly contributes to the activation process. A slow process of ripening, which minimizes surface energy, is suggested to convert the early leaflike pattern to a spiral assembly of hillocks. This model simulation yields patterns, which closely resemble the patterns observed in experiments reported by Shinde et al. [Phys. Rev. B 64, 035408 (2001)], in the accompanying Paper I.

  11. Evolutionary reconstruction of pattern formation in 98 Dictyostelium species reveals that cell-type specialization by lateral inhibition is a derived trait.

    Science.gov (United States)

    Schilde, Christina; Skiba, Anna; Schaap, Pauline

    2014-01-01

    Multicellularity provides organisms with opportunities for cell-type specialization, but requires novel mechanisms to position correct proportions of different cell types throughout the organism. Dictyostelid social amoebas display an early form of multicellularity, where amoebas aggregate to form fruiting bodies, which contain only spores or up to four additional cell-types. These cell types will form the stalk and support structures for the stalk and spore head. Phylogenetic inference subdivides Dictyostelia into four major groups, with the model organism D. discoideum residing in group 4. In D. discoideum differentiation of its five cell types is dominated by lateral inhibition-type mechanisms that trigger scattered cell differentiation, with tissue patterns being formed by cell sorting. To reconstruct the evolution of pattern formation in Dictyostelia, we used cell-type specific antibodies and promoter-reporter fusion constructs to investigate pattern formation in 98 species that represent all groupings. Our results indicate that in all early diverging Dictyostelia and most members of groups 1-3, cells differentiate into maximally two cell types, prestalk and prespore cells, with pattern formation being dominated by position-dependent transdifferentiation of prespore cells into prestalk cells. In clade 2A, prestalk and stalk cell differentiation are lost and the prespore cells construct an acellular stalk. Group 4 species set aside correct proportions of prestalk and prespore cells early in development, and differentiate into up to three more supporting cell types. Our experiments show that positional transdifferentiation is the ancestral mode of pattern formation in Dictyostelia. The early specification of a prestalk population equal to the number of stalk cells is a derived trait that emerged in group 4 and a few late diverging species in the other groups. Group 4 spore masses are larger than those of other groups and the differentiation of supporting cell

  12. Highly transparent poly(glycidyl methacrylate-co-acryloisobutyl POSS) for 100 μm-thick submicron patterns with an aspect ratio over 100.

    Science.gov (United States)

    Kim, Kwanghyun; Yu, Sunyoung; Kim, Sung-Wook; Kim, Taegeon; Kim, Sang-Min; Kang, Se-Young; Han, Seung Min; Jang, Ji-Hyun

    2017-07-18

    This is the first report on the fabrication of defect-free submicron structures with more than 100 μm thickness and an aspect ratio over 100. Highly transparent poly(glycidyl methacrylate-co-acryloisobutyl POSS) (PGP) was synthesized via radical polymerization. The mechanical properties of the PGP submicron structure displayed a Young's modulus of 6.09 GPa and a hardness of 0.16 GPa, 4.2 and 8 times, respectively, than those of SU8 nanopatterns. These enhancements enable the utilization of ultrathick 2D-/3D-submicron structures as an ideal platform for microelectromechanical systems, big data storage systems, energy devices, etc.

  13. Nano-stenciled RGD-gold patterns that inhibit focal contact maturation induce lamellipodia formation in fibroblasts.

    Directory of Open Access Journals (Sweden)

    Roman Lutz

    Full Text Available Cultured fibroblasts adhere to extracellular substrates by means of cell-matrix adhesions that are assembled in a hierarchical way, thereby gaining in protein complexity and size. Here we asked how restricting the size of cell-matrix adhesions affects cell morphology and behavior. Using a nanostencil technique, culture substrates were patterned with gold squares of a width and spacing between 250 nm and 2 µm. The gold was functionalized with RGD peptide as ligand for cellular integrins, and mouse embryo fibroblasts were plated. Limiting the length of cell-matrix adhesions to 500 nm or less disturbed the maturation of vinculin-positive focal complexes into focal contacts and fibrillar adhesions, as indicated by poor recruitment of α5-integrin. We found that on sub-micrometer patterns, fibroblasts spread extensively, but did not polarize. Instead, they formed excessive numbers of lamellipodia and a fine actin meshwork without stress fibers. Moreover, these cells showed aberrant fibronectin fibrillogenesis, and their speed of directed migration was reduced significantly compared to fibroblasts on 2 µm square patterns. Interference with RhoA/ROCK signaling eliminated the pattern-dependent differences in cell morphology. Our results indicate that manipulating the maturation of cell-matrix adhesions by nanopatterned surfaces allows to influence morphology, actin dynamics, migration and ECM assembly of adhering fibroblasts.

  14. Spontaneous formation of spiral-like patterns with distinct periodic physical properties by confined electrodeposition of Co-In disks

    Science.gov (United States)

    Golvano-Escobal, Irati; Gonzalez-Rosillo, Juan Carlos; Domingo, Neus; Illa, Xavi; López-Barberá, José Francisco; Fornell, Jordina; Solsona, Pau; Aballe, Lucia; Foerster, Michael; Suriñach, Santiago; Baró, Maria Dolors; Puig, Teresa; Pané, Salvador; Nogués, Josep; Pellicer, Eva; Sort, Jordi

    2016-01-01

    Spatio-temporal patterns are ubiquitous in different areas of materials science and biological systems. However, typically the motifs in these types of systems present a random distribution with many possible different structures. Herein, we demonstrate that controlled spatio-temporal patterns, with reproducible spiral-like shapes, can be obtained by electrodeposition of Co-In alloys inside a confined circular geometry (i.e., in disks that are commensurate with the typical size of the spatio-temporal features). These patterns are mainly of compositional nature, i.e., with virtually no topographic features. Interestingly, the local changes in composition lead to a periodic modulation of the physical (electric, magnetic and mechanical) properties. Namely, the Co-rich areas show higher saturation magnetization and electrical conductivity and are mechanically harder than the In-rich ones. Thus, this work reveals that confined electrodeposition of this binary system constitutes an effective procedure to attain template-free magnetic, electric and mechanical surface patterning with specific and reproducible shapes. PMID:27462025

  15. [3 + 2] versus [2 + 2] Addition: A Density Functional Theory Study on the Mechanistic Aspects of Transition Metal-Assisted Formation of 1,2-Dinitrosoalkanes

    Directory of Open Access Journals (Sweden)

    Ernest Opoku

    2016-01-01

    Full Text Available The pathways for the transition metal-assisted formation of 1,2-dinitrosoalkane complexes of cobalt and its congeners, have been studied using DFT/M06 with the LACVP* basis set. The activation barriers for the one-step [3 + 2] addition pathway for the formation of 1,2-dinitrosoalkanes, proposed by Bergman and Becker, are generally low compared to the activation barriers for the [2 + 2] addition to form an intermediate, which is the first of the two-step pathway proposed by Rappé and Upton, which are very high. The barriers of the rearrangement of the Rappé intermediates to the final products by reductive elimination involving the second metal-nitrogen π-bond are also very high. The reactions of the Co complexes have lower activation barriers than Rh and Ir complexes. The barriers of the reactions involving olefins with electron-donating groups are generally lower compared to the reactions of the parent (unsubstituted ethylene while the activation barriers for reactions of olefins with electron-withdrawing groups are generally higher compared to the parent (unsubstituted ethylene. The one-step [3 + 2] pathway remains the most favoured irrespective of the metal centre or the nature of the olefin. The mechanism of the reaction is therefore settled in favour of the [3 + 2] addition pathway.

  16. Palaeoecological aspects of some invertebrate trace fossils from the mid- to Upper Permian Middleton Formation (Adelaide Subgroup, Beaufort Group, Karoo Supergroup), Eastern Cape, South Africa

    Science.gov (United States)

    Bordy, Emese M.; Linkermann, Sean; Prevec, Rose

    2011-10-01

    Ichnological and sedimentological analyses in the Eastern Cape allowed the first description of a Cochlichnus-dominated ichnofossil site from the mid- to Upper Permian Middleton Formation (Karoo Supergroup) in South Africa. The locality is within the uppermost Pristerognathus Assemblage Zone, a biostratigraphic interval characterized by a low vertebrate biodiversity at the turn of the mid- to Late Permian. Our field data indicates that the surficial bioturbation of very fine to fine-grained sand layers resulted from life activities of shallow infaunal and epifaunal invertebrates (possibly annelids, aquatic oligochaetes, nematodes, insect larvae) and fish. The morphology of the trails, their relationship to the substrate and the behaviour inferred from them indicate that the tracemakers developed a strategy that facilitated the optimization of low food resources in a permanently submerged freshwater setting. Combined ichnological and sedimentological evidence suggests a low-energy, freshwater lacustrine depositional environment, where occasional higher energy currents brought nutrients. Data also imply that colonization of these erratic event beds by opportunistic sediment-feeders was short-lived and followed by longer intervals of lower energy deposition under possibly poorly oxygenated conditions. We propose that these event beds as well as the sporadic red mudstones of the Middleton Formation may have formed during short-term, higher storm-frequency and dryer periods, signalling changes in the otherwise humid climate in this part of the main Karoo Basin during the mid- to Late Permian.

  17. A study of the formation and branching pattern of brachial plexus and its variations in adult human cadavers of north Karnataka

    Directory of Open Access Journals (Sweden)

    Sheetal V Pattanshetti

    2012-01-01

    Full Text Available Introduction and Objectives: The brachial plexus is highly variable, in its formation and branching pattern thus, knowledge of its anatomical patterns, may be insufficient for the surgeon operating on or around these nerves or for the regional anesthesiologist working in this area. Therefore, the present study was an attempt to study further about variations of brachial plexus encountered during routine dissection classes. Materials and Methods: The present descriptive study was carried out by dissection of 60 upper limbs of 30 cadavers, in the age group of 18 to 85 years, obtained during a study period of 2 years from the Department of Anatomy. The plexus was studied in its entire course commencing from the formation in cervical region, course through root of the neck and axilla, up to the main terminal branches of the upper extremity. During the dissection, variations of brachial plexus pertaining to its formation from the roots, trunks, divisions and cords and the branching pattern were observed and data was collected. Results: Out of the 60 cadaveric upper limbs studied for the anatomical variations of the brachial plexus, 2 limbs (3.33% were pre-fixed plexuses. Fusion of adjacent trunks was detected in 2 limbs (3.33%. Variations in branches of lateral cord were detected in 8 limbs (13.33%. Among Posterior cord variations 2-thoracodorsal nerves were detected in 2 limbs (3.33%. All the other branches from brachial plexus had been found to have no anatomical variations. Conclusion: In the present study, an attempt has been made to know the possible variations of the brachial plexus. Though the variations mentioned may not alter the normal functioning of the limb of the individual, but knowledge of the variations is of prime importance to be kept in mind, during anaesthetic and surgical procedures.

  18. [New aspects of cerebrospinal fluid dynamics in man revealed by sequential camera scintigraphy and analysis with the digital computer. Part 1: method and physiologic patterns].

    Science.gov (United States)

    Palma, A; Kolberg, T

    1977-01-01

    1. The use of rapid sequential gamma camera scintigraphy in conjunction with computer aided storage and evaluation of data has been shown to be a promising method for the analysis of CSF dynamics in man. 2. Using this method rapid flow of CSF in the basal cisterns can be studied. The further course of tracer activity in different CSF compartments can be followed, and slow currents may be demonstrated. 3. Using this technique the patterns of varying regional CSF dynamics and reabsorption states can be examined. Intracranial activity after 24 hours is 40 to 45% anar behaviour of CSF circulation patterns in the basal cisterns, cisterna magna, and upper cervical area leads us to suggest that this complex of spaces forms a functional unity which may be called "The distribution center of CSF". Further movements of tracer substance seem to start from this complex. 5. In the well recognised CSF pathways over the cerebral convexities some characteristic patterns of fluid flow are demonstrated. The flow times at different situations over the convexities are given. 6. Analysis of spinal CSF flow shows that there are considerable variations in spinal CSF dynamics. 7. Finally, the different uses of this method in various situations are indicated.

  19. In vitro megakaryocyte differentiation and proplatelet formation in Ph-negative classical myeloproliferative neoplasms: distinct patterns in the different clinical phenotypes.

    Directory of Open Access Journals (Sweden)

    Alessandra Balduini

    Full Text Available BACKGROUND: Ph-negative myeloproliferative neoplasms (MPNs are clonal disorders that include primary myelofibrosis (PMF, polycythemia vera (PV and essential thrombocythemia (ET. Although the pathogenesis of MPNs is still incompletely understood, an involvement of the megakaryocyte lineage is a distinctive feature. METHODOLOGY/PRINCIPAL FINDINGS: We analyzed the in vitro megakaryocyte differentiation and proplatelet formation in 30 PMF, 8 ET, 8 PV patients, and 17 healthy controls (CTRL. Megakaryocytes were differentiated from peripheral blood CD34(+ or CD45(+ cells in the presence of thrombopoietin. Megakaryocyte output was higher in MPN patients than in CTRL with no correlation with the JAK2 V617F mutation. PMF-derived megakaryocytes displayed nuclei with a bulbous appearance, were smaller than ET- or PV-derived megakaryocytes and formed proplatelets that presented several structural alterations. In contrast, ET- and PV-derived megakaryocytes produced more proplatelets with a striking increase in bifurcations and tips compared to both control and PMF. Proplatelets formation was correlated with platelet counts in patient peripheral blood. Patients with pre-fibrotic PMF had a pattern of megakaryocyte proliferation and proplatelet formation that was similar to that of fibrotic PMF and different from that of ET. CONCLUSIONS/SIGNIFICANCE: In conclusion, MPNs are associated with high megakaryocyte proliferative potential. Profound differences in megakaryocyte morphology and proplatelet formation distinguish PMF, both fibrotic and prefibrotic, from ET and PV.

  20. Discovery of Upper Oligocene-Lower Miocene brown coal deposits (Kosh-Agach formation) in the Dzhazator River valley (Southeastern Russian Altai): Neotectonic and paleogeographical aspects

    Science.gov (United States)

    Agatova, A. R.; Nepop, R. K.; Rudaya, N. A.; Khazina, I. V.; Zhdanova, A. N.; Bronnikova, M. A.; Uspenskaya, O. N.; Zazovskaya, E. P.; Ovchinnikov, I. Y.; Panov, V. S.; Shurygin, B. N.

    2017-08-01

    Results of complex paleontological and geochemical analysis are reported for a new locality of the Upper Oligocene-Lower Miocene Kosh-Agach carbonaceous formation in the Dzhazator River valley. This find specifies the scales of lacustrine-marsh sedimentation at the end of the Paleogene and beginning of the Neogene, as well as the character and amplitude of post-Neogene neotectonic movements in the southeastern highest mountain part of Russian Altai. Systematic rejuvenation of the radiocarbon age of the sequences studied, which has been established for the first time in Altai, is related to influx of young carbon during the subsequent complex geological history. This fact is of great importance for deciphering the chronology of Pleistocene glacial-dammed lakes in the intermontane basins of Altai and Tuva, the erosion zone of which spanned exhumed Tertiary deposits.

  1. Phytological patterns during the rise of dinosaurs in the Chinle Formation of northern New Mexico, U.S.A.

    Science.gov (United States)

    Irmis, Randall B.; Lindström, Sofie; Mundil, Roland

    2010-05-01

    In the Upper Triassic Chinle Formation of northern New Mexico a diverse suite of basal dinosauromorphs and dinosaurs co-existed for many millions of years. Faunas with both these basal forms and dinosaurs, and basal archosaurs have so far only been recovered from the Petrified Forest Member, whereas assemblages from the younger 'siltstone' member include only dinosaurs and basal archosaurs. New palynological data from the Poleo Sandstone, and the overlying Petrified Forest and 'siltstone' members of the Chinle Formation indicate major changes in the vegetation over this interval. In general all the spore-pollen assemblages are dominated by bisaccate gymnospermous pollen, mainly Alisporites and Protodiploxypinus. However, in the Petrified Forest Member monosaccate conifer pollen assigned to Enzonalasporites become dominant, and this probably indicates dryer conditions. Within that same member the enigmatic palynomorph Froelichsporites traversei is abundant. The circumpolloid conifer pollen Camerosporites appears to be restricted to the Poleo Sandstone and the Petrified Forest Member. Within the overlying 'siltstone' member the Enzonalasporites decrease in abundance, and ferns and fern allies for the first time become common components of the palynoflora; this may indicate the on-set of more humid conditions in the area. A single crystal U-Pb IDTIMS date of 213.1 ± 0.4 Ma based on 16 zircon analyses from a redeposited sandstone within the lower part of the Petrified Forest Member places most of the Chinle Formation in New Mexico within the Norian, and indicates that basal dinosauromorphs and dinosaurs co-existed for at least 15 million years. In addition, it provides better constraints on the ranges of key Late Triassic palynomorph taxa, indicating that 'Carnian' palynomorph assemblages from the Chinle Formation are actually Norian in age.

  2. Formation of vanadium carbide precipitations at the surface of alloys: Thermodynamics and kinetics aspects; Bildung von Vanadiumcarbid-Ausscheidungen auf Legierungsoberflaechen: Thermodynamische und kinetische Aspekte

    Energy Technology Data Exchange (ETDEWEB)

    Schneider, A.; Uebing, C. [Max-Planck-Institut fuer Eisenforschung GmbH, Duesseldorf (Germany)

    1998-12-31

    The paper describes the formation of vanadium carbides on the surface layers of Fe-3%V-C(100) alloys. The phase diagram calculated for this alloyed material using the ThermoCalc program package reveals a co-existence of ferritic matrix and V{sub 3}C{sub 2} at temperatures of T{<=}650 C. This carbide is instable at elevated temperatures, leading to co-existence of ferrite and the cubic VC{sub 1-x}. Experimental analyses revealed the formation of a 2D VC compound in the top layers of the surface of Fe-3%V-C(100) alloys, induced by equilibrium segregation. The paper explains the usefulness of thermodynamic and kinetic calculations for interpretation of precipitation phenomena in steels. Mathematically derived and experimental results of analyses for the case of non-equilibrium segregation showed excellent agreement in the determination of carbide thickness (nanometer scale) and time dependence of segregation under fast cooling conditions. (orig./CB) [Deutsch] In der vorliegenden Arbeit wurde die Bildung von Vanadiumcarbiden auf Fe-3%V-C(100)-Legierungsoberflaechen beschrieben. Das anhand des ThermoCalc-Programmpakets fuer diese Legierungszusammensetzung berechnete Phasendiagramm zeigt bei niedrigen Temperaturen T{<=}650 C die Koexistenz von ferritischer Matrix und V{sub 3}C{sub 2}. Bei hoeheren Temperaturen ist dieses Carbid instabil und es liegt Koexistenz von Ferrit und dem kubischen VC{sub 1-x} vor. Die experimentellen Untersuchungen zeigen die Ausbildung einer zweidimensionalen VC-Oberflaechenverbindung auf Fe-3%V-C(100)-Legierungsoberflaechen durch Gleichgewichtssegregation. Diese Arbeit zeigt, dass thermodynamische und kinetische Rechnungen bei der Deutung von Ausscheidungsphaenomenen in Staehlen sinnvoll eingesetzt werden koennen. Bei der Nichtgleichgewichtssegregation wurde bezueglich Carbiddicke (im Nanometerbereich) und Zeitabhaengigkeit der Ausscheidung bei schneller Abkuehlung eine hervorragende Uebereinstimmung zwischen Simulation und Experiment gefunden

  3. The differential expression of MC1R regulators in dorsal and ventral quail plumages during embryogenesis: Implications for plumage pattern formation.

    Science.gov (United States)

    Gluckman, Thanh-Lan; Mundy, Nicholas I

    2017-01-01

    Melanin pigmentation patterns are ubiquitous in animals and function in crypsis, physical protection, thermoregulation and signalling. In vertebrates, pigmentation patterns formed over large body regions as well as within appendages (hair/feathers) may be due to the differential distribution of pigment producing cells (melanocytes) and/or regulation of the melanin synthesis pathway. We took advantage of the pigmentation patterns of Japanese quail embryos (pale ventrum and patterned feathers dorsally) to explore the role of genes and their transcripts in regulating the function of the melanocortin-1-receptor (MC1R) via 1. activation: pro-opiomelanocortin (POMC), endoproteases prohormone convertase 1 (PC1) and 2 (PC2), and 2. inhibition-agouti signaling and agouti-related protein (ASIP and AGRP, respectively). Melanocytes are present in all feather follicles at both 8 and 12 days post-fertilisation (E8/E12), so differential deposition of melanocytes is not responsible for pigmentation patterns in embryonic quail. POMC transcripts expressed were a subset of those found in chicken and POMC expression within feather follicles was strong. PC1 was not expressed in feather follicles. PC2 was strongly expressed in all feather follicles at E12. ASIP transcript expression was variable and we report four novel ASIP transcripts. ASIP is strongly expressed in ventral feather follicles, but not dorsally. AGRP expression within feather follicles was weak. These results demonstrate that the pale-bellied quail phenotype probably involves inhibition of MC1R, as found previously. However, quail may require MC1R activation for eumelanogenesis in dorsal feathers which may have important implications for an understanding of colour pattern formation in vertebrates.

  4. The differential expression of MC1R regulators in dorsal and ventral quail plumages during embryogenesis: Implications for plumage pattern formation.

    Directory of Open Access Journals (Sweden)

    Thanh-Lan Gluckman

    Full Text Available Melanin pigmentation patterns are ubiquitous in animals and function in crypsis, physical protection, thermoregulation and signalling. In vertebrates, pigmentation patterns formed over large body regions as well as within appendages (hair/feathers may be due to the differential distribution of pigment producing cells (melanocytes and/or regulation of the melanin synthesis pathway. We took advantage of the pigmentation patterns of Japanese quail embryos (pale ventrum and patterned feathers dorsally to explore the role of genes and their transcripts in regulating the function of the melanocortin-1-receptor (MC1R via 1. activation: pro-opiomelanocortin (POMC, endoproteases prohormone convertase 1 (PC1 and 2 (PC2, and 2. inhibition-agouti signaling and agouti-related protein (ASIP and AGRP, respectively. Melanocytes are present in all feather follicles at both 8 and 12 days post-fertilisation (E8/E12, so differential deposition of melanocytes is not responsible for pigmentation patterns in embryonic quail. POMC transcripts expressed were a subset of those found in chicken and POMC expression within feather follicles was strong. PC1 was not expressed in feather follicles. PC2 was strongly expressed in all feather follicles at E12. ASIP transcript expression was variable and we report four novel ASIP transcripts. ASIP is strongly expressed in ventral feather follicles, but not dorsally. AGRP expression within feather follicles was weak. These results demonstrate that the pale-bellied quail phenotype probably involves inhibition of MC1R, as found previously. However, quail may require MC1R activation for eumelanogenesis in dorsal feathers which may have important implications for an understanding of colour pattern formation in vertebrates.

  5. The impact of alcohol consumption on patterns of union formation in Russia 1998–2010: An assessment using longitudinal data

    Science.gov (United States)

    Keenan, Katherine; Kenward, Michael G.; Grundy, Emily; Leon, David A.

    2014-01-01

    Using data from the Russian Longitudinal Monitoring Survey, 1998–2010, we investigated the extent to which patterns of alcohol consumption in Russia are associated with the subsequent likelihood of entry into cohabitation and marriage. Using discrete-time event history analysis we estimated for 16–50 year olds the extent to which the probabilities of entry into the two types of union were affected by the amount of alcohol drunk and the pattern of drinking, adjusted to allow for social and demographic factors including income, employment, and health. The results show that individuals who did not drink alcohol were less likely to embark on either cohabitation or marriage, that frequent consumption of alcohol was associated with a greater chance of entering unmarried cohabitation than of entering into a marriage, and that heavy drinkers were less likely to convert their relationship from cohabitation to marriage. PMID:25320843

  6. The impact of alcohol consumption on patterns of union formation in Russia 1998-2010: an assessment using longitudinal data.

    Science.gov (United States)

    Keenan, Katherine; Kenward, Michael G; Grundy, Emily; Leon, David A

    2014-01-01

    Using data from the Russian Longitudinal Monitoring Survey, 1998-2010, we investigated the extent to which patterns of alcohol consumption in Russia are associated with the subsequent likelihood of entry into cohabitation and marriage. Using discrete-time event history analysis we estimated for 16-50 year olds the extent to which the probabilities of entry into the two types of union were affected by the amount of alcohol drunk and the pattern of drinking, adjusted to allow for social and demographic factors including income, employment, and health. The results show that individuals who did not drink alcohol were less likely to embark on either cohabitation or marriage, that frequent consumption of alcohol was associated with a greater chance of entering unmarried cohabitation than of entering into a marriage, and that heavy drinkers were less likely to convert their relationship from cohabitation to marriage.

  7. Discharge competence and pattern formation in peatlands: a meta-ecosystem model of the Everglades ridge-slough landscape.

    Science.gov (United States)

    Heffernan, James B; Watts, Danielle L; Cohen, Matthew J

    2013-01-01

    Regular landscape patterning arises from spatially-dependent feedbacks, and can undergo catastrophic loss in response to changing landscape drivers. The central Everglades (Florida, USA) historically exhibited regular, linear, flow-parallel orientation of high-elevation sawgrass ridges and low-elevation sloughs that has degraded due to hydrologic modification. In this study, we use a meta-ecosystem approach to model a mechanism for the establishment, persistence, and loss of this landscape. The discharge competence (or self-organizing canal) hypothesis assumes non-linear relationships between peat accretion and water depth, and describes flow-dependent feedbacks of microtopography on water depth. Closed-form model solutions demonstrate that 1) this mechanism can produce spontaneous divergence of local elevation; 2) divergent and homogenous states can exhibit global bi-stability; and 3) feedbacks that produce divergence act anisotropically. Thus, discharge competence and non-linear peat accretion dynamics may explain the establishment, persistence, and loss of landscape pattern, even in the absence of other spatial feedbacks. Our model provides specific, testable predictions that may allow discrimination between the self-organizing canal hypotheses and competing explanations. The potential for global bi-stability suggested by our model suggests that hydrologic restoration may not re-initiate spontaneous pattern establishment, particularly where distinct soil elevation modes have been lost. As a result, we recommend that management efforts should prioritize maintenance of historic hydroperiods in areas of conserved pattern over restoration of hydrologic regimes in degraded regions. This study illustrates the value of simple meta-ecosystem models for investigation of spatial processes.

  8. Discharge competence and pattern formation in peatlands: a meta-ecosystem model of the Everglades ridge-slough landscape.

    Directory of Open Access Journals (Sweden)

    James B Heffernan

    Full Text Available Regular landscape patterning arises from spatially-dependent feedbacks, and can undergo catastrophic loss in response to changing landscape drivers. The central Everglades (Florida, USA historically exhibited regular, linear, flow-parallel orientation of high-elevation sawgrass ridges and low-elevation sloughs that has degraded due to hydrologic modification. In this study, we use a meta-ecosystem approach to model a mechanism for the establishment, persistence, and loss of this landscape. The discharge competence (or self-organizing canal hypothesis assumes non-linear relationships between peat accretion and water depth, and describes flow-dependent feedbacks of microtopography on water depth. Closed-form model solutions demonstrate that 1 this mechanism can produce spontaneous divergence of local elevation; 2 divergent and homogenous states can exhibit global bi-stability; and 3 feedbacks that produce divergence act anisotropically. Thus, discharge competence and non-linear peat accretion dynamics may explain the establishment, persistence, and loss of landscape pattern, even in the absence of other spatial feedbacks. Our model provides specific, testable predictions that may allow discrimination between the self-organizing canal hypotheses and competing explanations. The potential for global bi-stability suggested by our model suggests that hydrologic restoration may not re-initiate spontaneous pattern establishment, particularly where distinct soil elevation modes have been lost. As a result, we recommend that management efforts should prioritize maintenance of historic hydroperiods in areas of conserved pattern over restoration of hydrologic regimes in degraded regions. This study illustrates the value of simple meta-ecosystem models for investigation of spatial processes.

  9. CO{sub 2} Sequestration Capacity and Associated Aspects of the Most Promising Geologic Formations in the Rocky Mountain Region: Local-Scale Analyses

    Energy Technology Data Exchange (ETDEWEB)

    Laes, Denise; Eisinger, Chris; Morgan, Craig; Rauzi, Steve; Scholle, Dana; Scott, Phyllis; Lee, Si-Yong; Zaluski, Wade; Esser, Richard; Matthews, Vince; McPherson, Brian

    2013-07-30

    The purpose of this report is to provide a summary of individual local-­scale CCS site characterization studies conducted in Colorado, New Mexico and Utah. These site-­ specific characterization analyses were performed as part of the “Characterization of Most Promising Sequestration Formations in the Rocky Mountain Region” (RMCCS) project. The primary objective of these local-­scale analyses is to provide a basis for regional-­scale characterization efforts within each state. Specifically, limits on time and funding will typically inhibit CCS projects from conducting high-­ resolution characterization of a state-­sized region, but smaller (< 10,000 km{sup 2}) site analyses are usually possible, and such can provide insight regarding limiting factors for the regional-­scale geology. For the RMCCS project, the outcomes of these local-­scale studies provide a starting point for future local-­scale site characterization efforts in the Rocky Mountain region.

  10. Mineralogy and petrology aspects of Mesaverde Formation at Rifle Gap, Colorado, specific to the sedimentology and gas-bearing intervals in the subsurface

    Energy Technology Data Exchange (ETDEWEB)

    Heinze, D.M.

    1983-03-01

    Rifle Gap, situated on the eastern edge of the Piceance Creek Basin, northwestern Colorado, has been the focus of sedimentological studies in an effort to understand the tight, gas-bearing intervals of the inner-basin subsurface. These Mesaverde Formation sandstone exposures were sampled and anlayzed for mineral content and grain morphology. Varying detrital mineralogy supports a sedimentological model for the area which includes shoreline blanket, paludal, fluvial, and marine zones (from bottom to top). Observable mineralogical determinants for the depositional groups include chert, organic and feldspar content, sorting, and grain size. Statistical methods were successful in distinguishing groups in the data which correspond nicely to the model's environments of deposition. Analcime, feldspar, clay, rock fragments, and organics are significant variables in group separation. Time, stability, rock matrix relationships, and grain morphology are proposed as explanatory elements for correlations of variables. The upper and lower half of the section have distinctly different analcime content. Kaolinite is correlated inversely with analcime suggesting an alteration relationship dependent on alkaline lake waters. All observations, correlations, and interpretations of the Rifle Gap data provide a basis for explaining gas-bearing subsurface deposits in the Department of Energy's Wester Gas Sands project Multi-Well Experiment, 12 miles away.

  11. Equi-Depth Tooth Hypoid Gear Using Formate Gear Cutting Method : 2nd Report, Cutting Conditions and Tooth Bearing Pattern

    OpenAIRE

    伊藤, 紀男; 野村, 和弘

    1995-01-01

    In general, a hypoid gear and a spiral bevel gear for cars are made up of a formate gear and a generated pinion. The tooth shape is tapered tooth. Much practice is required to obtain excellent tooth bearing of the tapered tooth. If we convert a tapered tooth to an equi-depth tooth, it is thought that we could easily obtain practical tooth bearing. To date, however, there is no paper that theoretically analyzes tooth bearing of the equi-depth tooth and actually demonstrates it. Therefore the t...

  12. Fluorescent antibody test, quantitative polymerase chain reaction pattern and clinical aspects of rabies virus strains isolated from main reservoirs in Brazil

    Directory of Open Access Journals (Sweden)

    Camila Appolinário

    Full Text Available ABSTRACTRabies virus (RABV isolated from different mammals seems to have unique characteristics that influence the outcome of infection. RABV circulates in nature and is maintained by reservoirs that are responsible for the persistence of the disease for almost 4000 years. Considering the different pattern of pathogenicity of RABV strains in naturally and experimentally infected animals, the aim of this study was to analyze the characteristics of RABV variants isolated from the main Brazilian reservoirs, being related to a dog (variant 2,Desmodus rotundus (variant 3, crab eating fox, marmoset, and Myotis spp. Viral replication in brain tissue of experimentally infected mouse was evaluated by two laboratory techniques and the results were compared to clinical evolution from five RABV variants. The presence of the RABV was investigated in brain samples by fluorescent antibody test (FAT and real time polymerase chain reaction (qRT-PCR for quantification of rabies virus nucleoprotein gene (N gene. Virus replication is not correlated with clinical signs and evolution. The pattern of FAT is associated with RABV replication levels. Virus isolates from crab eating fox and marmoset had a longer evolution period and higher survival rate suggesting that the evolution period may contribute to the outcome. RABV virus variants had independent characteristics that determine the clinical evolution and survival of the infected mice.

  13. Muscle formation during embryogenesis of the polychaete Ophryotrocha diadema (Dorvilleidae – new insights into annelid muscle patterns

    Directory of Open Access Journals (Sweden)

    Paululat Achim

    2008-01-01

    Full Text Available Abstract Background The standard textbook information that annelid musculature consists of oligochaete-like outer circular and inner longitudinal muscle-layers has recently been called into question by observations of a variety of complex muscle systems in numerous polychaete taxa. To clarify the ancestral muscle arrangement in this taxon, we compared myogenetic patterns during embryogenesis of Ophryotrocha diadema with available data on oligochaete and polychaete myogenesis. This work addresses the conflicting views on the ground pattern of annelids, and adds to our knowledge of the evolution of lophotrochozoan taxa. Results Somatic musculature in Ophryotrocha diadema can be classified into the trunk, prostomial/peristomial, and parapodial muscle complexes. The trunk muscles comprise strong bilateral pairs of distinct dorsal and ventral longitudinal strands. The latter are the first to differentiate during myogenesis. They originate within the peristomium and grow posteriorly through the continuous addition of myocytes. Later, the longitudinal muscles also expand anteriorly and form a complex arrangement of prostomial muscles. Four embryonic parapodia differentiate in an anterior-to-posterior progression, significantly contributing to the somatic musculature. Several diagonal and transverse muscles are present dorsally. Some of the latter are situated external to the longitudinal muscles, which implies they are homologous to the circular muscles of oligochaetes. These circular fibers are only weakly developed, and do not appear to form complete muscle circles. Conclusion Comparison of embryonic muscle patterns showed distinct similarities between myogenetic processes in Ophryotrocha diadema and those of oligochaete species, which allows us to relate the diverse adult muscle arrangements of these annelid taxa to each other. These findings provide significant clues for the interpretation of evolutionary changes in annelid musculature.

  14. Effect of Environmental Stresses on Growth Pattern, Biofilm Formation and Biochemical Characteristics of Mycobacterium marinum CCUG20998

    Directory of Open Access Journals (Sweden)

    Mohammad Faezi Ghasemi

    2016-08-01

    Full Text Available Background Mycobacterium marinum is a ubiquitous, slow-growing nontuberclosis Mycobacterium (NTM, it can causes disseminated granulomatous infections in fish. Outbreaks in fisheries can be financially devastating and can also increase the chance of human exposure. Objectives The aim of this work was evaluating the effects of some environmental stresses on M. marinum CCUG 20998. Methods In this descriptive-analytic study M. marinum CCUG 20998 was subjected to different conditions of environmental stresses such as pH, oxidative, osmotic pressure, and temperatures. The effects of stresses were studied on growth, biofilm formation, and cell division and biochemical characteristics of M. marinum CCUG 20998.The growth data were analyzed by measuring colony forming unit (CFU using SPSS software version 19. Results The results showed that sodium chloride and hydrogen peroxide at %10 and 9600 ppm concentrations inhibit. Marinum CCUG 20998 growths, respectively. Tolerance to pH = 11 and temperature at 82.5°C was detectable. Also, environmental stresses could affects on some biochemical characteristics of M. marinum CCUG 20998. Biofilm formation reduced upon using all stress conditions. Conclusions Bacteria are able to adapt to dramatically different environments, In the case of mycobacteria, there is direct correlation between stress and pathogenicity. The results obtained from this study provided useful information on survival and tolerance of M. marinum CCUG 20998 to different environmental conditions. Survival under stress conditions might not reflect the in vivo situation where host factors also contribute to establishment of the organism during infection.

  15. Conditional inactivation of Has2 reveals a crucial role for hyaluronan in skeletal growth, patterning, chondrocyte maturation and joint formation in the developing limb.

    Science.gov (United States)

    Matsumoto, Kazu; Li, Yingcui; Jakuba, Caroline; Sugiyama, Yoshinori; Sayo, Tetsuya; Okuno, Misako; Dealy, Caroline N; Toole, Bryan P; Takeda, Junji; Yamaguchi, Yu; Kosher, Robert A

    2009-08-01

    The glycosaminoglycan hyaluronan (HA) is a structural component of extracellular matrices and also interacts with cell surface receptors to directly influence cell behavior. To explore functions of HA in limb skeletal development, we conditionally inactivated the gene for HA synthase 2, Has2, in limb bud mesoderm using mice that harbor a floxed allele of Has2 and mice carrying a limb mesoderm-specific Prx1-Cre transgene. The skeletal elements of Has2-deficient limbs are severely shortened, indicating that HA is essential for normal longitudinal growth of all limb skeletal elements. Proximal phalanges are duplicated in Has2 mutant limbs indicating an involvement of HA in patterning specific portions of the digits. The growth plates of Has2-deficient skeletal elements are severely abnormal and disorganized, with a decrease in the deposition of aggrecan in the matrix and a disruption in normal columnar cellular relationships. Furthermore, there is a striking reduction in the number of hypertrophic chondrocytes and in the expression domains of markers of hypertrophic differentiation in the mutant growth plates, indicating that HA is necessary for the normal progression of chondrocyte maturation. In addition, secondary ossification centers do not form in the central regions of Has2 mutant growth plates owing to a failure of hypertrophic differentiation. In addition to skeletal defects, the formation of synovial joint cavities is defective in Has2-deficient limbs. Taken together, our results demonstrate that HA has a crucial role in skeletal growth, patterning, chondrocyte maturation and synovial joint formation in the developing limb.

  16. Disentangling endogenous versus exogenous pattern formation in spatial ecology: a case study of the ant Azteca sericeasur in southern Mexico.

    Science.gov (United States)

    Li, Kevin; Vandermeer, John H; Perfecto, Ivette

    2016-05-01

    Spatial patterns in ecology can be described as reflective of environmental heterogeneity (exogenous), or emergent from dynamic relationships between interacting species (endogenous), but few empirical studies focus on the combination. The spatial distribution of the nests of Azteca sericeasur, a keystone tropical arboreal ant, is thought to form endogenous spatial patterns among the shade trees of a coffee plantation through self-regulating interactions with controlling agents (i.e. natural enemies). Using inhomogeneous point process models, we found evidence for both types of processes in the spatial distribution of A. sericeasur. Each year's nest distribution was determined mainly by a density-dependent relationship with the previous year's lagged nest density; but using a novel application of a Thomas cluster process to account for the effects of nest clustering, we found that nest distribution also correlated significantly with tree density in the later years of the study. This coincided with the initiation of agricultural intensification and tree felling on the coffee farm. The emergence of this significant exogenous effect, along with the changing character of the density-dependent effect of lagged nest density, provides clues to the mechanism behind a unique phenomenon observed in the plot, that of an increase in nest population despite resource limitation in nest sites. Our results have implications in coffee agroecological management, as this system provides important biocontrol ecosystem services. Further research is needed, however, to understand the effective scales at which these relationships occur.

  17. Membrane binding of MinE allows for a comprehensive description of Min-protein pattern formation.

    Directory of Open Access Journals (Sweden)

    Mike Bonny

    Full Text Available The rod-shaped bacterium Escherichia coli selects the cell center as site of division with the help of the proteins MinC, MinD, and MinE. This protein system collectively oscillates between the two cell poles by alternately binding to the membrane in one of the two cell halves. This dynamic behavior, which emerges from the interaction of the ATPase MinD and its activator MinE on the cell membrane, has become a paradigm for protein self-organization. Recently, it has been found that not only the binding of MinD to the membrane, but also interactions of MinE with the membrane contribute to Min-protein self-organization. Here, we show that by accounting for this finding in a computational model, we can comprehensively describe all observed Min-protein patterns in vivo and in vitro. Furthermore, by varying the system's geometry, our computations predict patterns that have not yet been reported. We confirm these predictions experimentally.

  18. Spine formation pattern of adult-born neurons is differentially modulated by the induction timing and location of hippocampal plasticity.

    Directory of Open Access Journals (Sweden)

    Noriaki Ohkawa

    Full Text Available In the adult hippocampus dentate gyrus (DG, newly born neurons are functionally integrated into existing circuits and play important roles in hippocampus-dependent memory. However, it remains unclear how neural plasticity regulates the integration pattern of new neurons into preexisting circuits. Because dendritic spines are major postsynaptic sites for excitatory inputs, spines of new neurons were visualized by retrovirus-mediated labeling to evaluate integration. Long-term potentiation (LTP was induced at 12, 16, or 21 days postinfection (dpi, at which time new neurons have no, few, or many spines, respectively. The spine expression patterns were investigated at one or two weeks after LTP induction. Induction at 12 dpi increased later spinogenesis, although the new neurons at 12 dpi didn't respond to the stimulus for LTP induction. Induction at 21 dpi transiently mediated spine enlargement. Surprisingly, LTP induction at 16 dpi reduced the spine density of new neurons. All LTP-mediated changes specifically appeared within the LTP-induced layer. Therefore, neural plasticity differentially regulates the integration of new neurons into the activated circuit, dependent on their developmental stage. Consequently, new neurons at different developmental stages may play distinct roles in processing the acquired information by modulating the connectivity of activated circuits via their integration.

  19. Epidemiological aspects of bovine trypanosomosis in an endemic focus of eastern Zambia: The role of trypanosome strain variability in disease pattern

    Directory of Open Access Journals (Sweden)

    Justin Masumu

    2012-06-01

    Full Text Available Bovine trypanosomosis displays various epidemiological aspects in various areas. In some instances the disease has a high prevalence in animals with high impact on production whereas in other cases the disease has a low impact on production despite a high level of infection in animals. In addition epidemiological changes are frequently observed in various areas and are related to many factors including the vectors, the host, the parasites, the environment as well as the livestock management. However the implication of these factors in these changes is not fully elucidated. In eastern Zambia, factors predicting the establishment of severe infection in cattle are all present. However trypanosomosis occurring in cattle in this area has a low impact on livestock production. Several studies on the characterisation of trypanosome strains circulating in domestic and wild animals have been conducted in order to clarify the epidemiology of this disease in this area. These studies aimed at evaluating genetic and biological characteristics of these strains including their virulence profiles, their transmissibility by tsetse flies, their resistance to drugs and interference between different strains. In this review these findings are analysed in order to elucidate the implication of trypanosome strain variability in the distribution and the expression of this disease in the study area. The evolutionary trends of the situation occurring in this study area are also explained. Use of these findings is the context of disease control in the study area is further discussed.

  20. Structural Evolution During Formation and Filling of Self-patterned Nanoholes on GaAs (100 Surfaces

    Directory of Open Access Journals (Sweden)

    Zhou Lin

    2008-01-01

    Full Text Available Abstract Nanohole formation on an AlAs/GaAs superlattice gives insight to both the “drilling” effect of Ga droplets on AlAs as compared to GaAs and the hole-filling process. The shape and depth of the nanoholes formed on GaAs (100 substrates has been studied by the cross-section transmission electron microscopy. The Ga droplets “drill” through the AlAs layer at a much slower rate than through GaAs due to differences in activation energy. Refill of the nanohole results in elongated GaAs mounds along the [01−1] direction. As a result of capillarity-induced diffusion, GaAs favors growth inside the nanoholes, which provides the possibility to fabricate GaAs and AlAs nanostructures.

  1. Role of the temperature instabilities for formation of nano-patterns upon single femtosecond laser pulses on gold

    CERN Document Server

    Gurevich, Evgeny L; Gurevich, Svetlana V; Bulgakova, Nadezhda M

    2016-01-01

    In this paper we investigate whether the periodic structures on metal surfaces exposed to single ultrashort laser pulses can appear due to an instability induced by two-temperature heating dynamics. The results of two-temperature model (TTM) 2D simulations are presented on the irradiation of gold by a single 800 nm femtosecond laser pulse whose intensity is modulated in order to reproduce a small initial temperature perturbation, which can arise from incoming and scattered surface wave interference. The growing (unstable) modes of the temperature distribution along the surface may be responsible for the LIPSS (Laser Induced Periodic Surface Structures) formation. After the end of the laser pulse and before the complete coupling between lattice and electrons occurs, the evolution of the amplitude of the subsequent modulation in the lattice temperature reveals different tendencies depending on the spatial period of the initial modulation. This instability-like behaviour is shown to arise due to the perturbation...

  2. Phase-field modeling of microstructural pattern formation during directional solidification of peritectic alloys without morphological instability

    Energy Technology Data Exchange (ETDEWEB)

    Shing Lo, Tak; Karma, Alain; Plapp, Mathis

    2001-03-01

    During the directional solidification of peritectic alloys, two stable solid phases (parent and peritectic) grow competitively into a metastable liquid phase of larger impurity content than either solid phase. When the parent or both solid phases are morphologically unstable, i.e., for a small temperature gradient/growth rate ratio (G/v{sub p}), one solid phase usually outgrows and covers the other phase, leading to a cellular-dendritic array structure closely analogous to the one formed during monophase solidification of a dilute binary alloy. In contrast, when G/v{sub p} is large enough for both phases to be morphologically stable, the formation of the microstructure becomes controlled by a subtle interplay between the nucleation and growth of the two solid phases. The structures that have been observed in this regime (in small samples where convection effects are suppressed) include alternate layers (bands) of the parent and peritectic phases perpendicular to the growth direction, which are formed by alternate nucleation and lateral spreading of one phase onto the other as proposed in a recent model [R. Trivedi, Metall. Mater. Trans. A 26, 1 (1995)], as well as partially filled bands (islands), where the peritectic phase does not fully cover the parent phase which grows continuously. We develop a phase-field model of peritectic solidification that incorporates nucleation processes in order to explore the formation of these structures. Simulations of this model shed light on the morphology transition from islands to bands, the dynamics of spreading of the peritectic phase on the parent phase following nucleation, which turns out to be characterized by a remarkably constant acceleration, and the types of growth morphology that one might expect to observe in large samples under purely diffusive growth conditions.

  3. Phase-field modeling of microstructural pattern formation during directional solidification of peritectic alloys without morphological instability

    Science.gov (United States)

    Shing Lo, Tak; Karma, Alain; Plapp, Mathis

    2001-03-01

    During the directional solidification of peritectic alloys, two stable solid phases (parent and peritectic) grow competitively into a metastable liquid phase of larger impurity content than either solid phase. When the parent or both solid phases are morphologically unstable, i.e., for a small temperature gradient/growth rate ratio (G/vp), one solid phase usually outgrows and covers the other phase, leading to a cellular-dendritic array structure closely analogous to the one formed during monophase solidification of a dilute binary alloy. In contrast, when G/vp is large enough for both phases to be morphologically stable, the formation of the microstructure becomes controlled by a subtle interplay between the nucleation and growth of the two solid phases. The structures that have been observed in this regime (in small samples where convection effects are suppressed) include alternate layers (bands) of the parent and peritectic phases perpendicular to the growth direction, which are formed by alternate nucleation and lateral spreading of one phase onto the other as proposed in a recent model [R. Trivedi, Metall. Mater. Trans. A 26, 1 (1995)], as well as partially filled bands (islands), where the peritectic phase does not fully cover the parent phase which grows continuously. We develop a phase-field model of peritectic solidification that incorporates nucleation processes in order to explore the formation of these structures. Simulations of this model shed light on the morphology transition from islands to bands, the dynamics of spreading of the peritectic phase on the parent phase following nucleation, which turns out to be characterized by a remarkably constant acceleration, and the types of growth morphology that one might expect to observe in large samples under purely diffusive growth conditions.

  4. Different morphologic formation patterns of dark patches in the black-spotted frog (Pelophylax nigromaculata) and the Asiatic toad (Bufo gargarizans).

    Science.gov (United States)

    Guangming, Gan; Tao, Zhao; Chao, Li; Moyan, Zhao

    2017-01-01

    The black-spotted frog (Pelophylax nigromaculata) and Asiatic toad (Bufo gargarizans), two relatively distantly related species, live in different habitats with different adaptive dark patches. To explain the formation of dark patches, the distribution patterns of melanin granules were examined with light microscopy and transmission electron microscopy. Melanin granules were produced and gathered into the "cap" structures on top of the nuclei in most epidermal cells. The "cap" structures may play a role in forming the dorsal dark patches coupled with three-layer melanophores, which can give rise to three layers of interconnected melanin networks in the dorsal dermis in P. nigromaculata. Epidermal melanocytes are rare and do not have a definitive role in forming dorsal dark patches in either P. nigromaculata or B. gargarizans. In B. gargarizans, the dermal melanophores only give rise to a single-layered melanin network, which hardly results in dark patches in the dorsal skin. However, the dermal melanophores migrate twice and form into pseudostratified networks, leading to dark patch formation in the ventral skin in B. gargarizans. The melanin granules precisely coregulate dark patches in the dermis and/or epidermis in P. nigromaculata and B. gargarizans. The dark patch formation depends on melanin granules in the epidermis or/and dermis in P. nigromaculata and B. gargarizans.

  5. Excitation and Adaptation in Bacteria–a Model Signal Transduction System that Controls Taxis and Spatial Pattern Formation

    Directory of Open Access Journals (Sweden)

    Chuan Xue

    2013-04-01

    Full Text Available The machinery for transduction of chemotactic stimuli in the bacterium E. coli is one of the most completely characterized signal transduction systems, and because of its relative simplicity, quantitative analysis of this system is possible. Here we discuss models which reproduce many of the important behaviors of the system. The important characteristics of the signal transduction system are excitation and adaptation, and the latter implies that the transduction system can function as a “derivative sensor” with respect to the ligand concentration in that the DC component of a signal is ultimately ignored if it is not too large. This temporal sensing mechanism provides the bacterium with a memory of its passage through spatially- or temporally-varying signal fields, and adaptation is essential for successful chemotaxis. We also discuss some of the spatial patterns observed in populations and indicate how cell-level behavior can be embedded in population-level descriptions.

  6. Molecular bioelectricity in developmental biology: new tools and recent discoveries: control of cell behavior and pattern formation by transmembrane potential gradients.

    Science.gov (United States)

    Levin, Michael

    2012-03-01

    Significant progress in the molecular investigation of endogenous bioelectric signals during pattern formation in growing tissues has been enabled by recently developed techniques. Ion flows and voltage gradients produced by ion channels and pumps are key regulators of cell proliferation, migration, and differentiation. Now, instructive roles for bioelectrical gradients in embryogenesis, regeneration, and neoplasm are being revealed through the use of fluorescent voltage reporters and functional experiments using well-characterized channel mutants. Transmembrane voltage gradients (V(mem) ) determine anatomical polarity and function as master regulators during appendage regeneration and embryonic left-right patterning. A state-of-the-art recent study reveals that they can also serve as prepatterns for gene expression domains during craniofacial patterning. Continued development of novel tools and better ways to think about physical controls of cell-cell interactions will lead to mastery of the morphogenetic information stored in physiological networks. This will enable fundamental advances in basic understanding of growth and form, as well as transformative biomedical applications in regenerative medicine. Copyright © 2012 WILEY Periodicals, Inc.

  7. Mediterranean dietary pattern and VEGF +405 G/C gene polymorphisms in patients with metabolic syndrome: An aspect of gene-nutrient interaction.

    Science.gov (United States)

    Hajiluian, Ghazaleh; Abbasalizad Farhangi, Mahdieh; Jahangiry, Leila

    2017-01-01

    To evaluate the relationship between Mediterranean dietary pattern, anthropometric and metabolic biomarkers and vascular endothelial growth factor (VEGF) +405 G/C gene polymorphism in patient with metabolic syndrome (Mets). In this study 150 patients with Mets and 50 healthy subjects were enrolled. Dietary intakes were evaluated with a semi-quantitative food-frequency questionnaire (FFQ) and Mediterranean dietary quality index (Med-DQI) was assessed. Anthropometric assessments and blood pressure measurement were performed. Biochemical assays including fasting serum glucose (FSG), matrix metalloproteinase-3 (MMP-3), liver enzymes and lipid profiles were also assessed. Polymorphism of +405 G/C VEGF gene was determined utilizing polymerase chain reaction-restriction fragments length polymorphism (PCR-RFLP) method. Serum high density lipoprotein-cholesterol (HDL-C) was significantly lower and low density lipoprotein cholesterol (LDL-C), triglyceride (TG), total cholesterol (TC) concentrations and FSG were significantly higher in metabolic syndrome patients compared with control group (P Metabolic syndrome group with high consumption of "cholesterol" had significantly upper serum TG; also high consumption of "fish" and "vegetables-fruits" was associated with a significantly lower serum LDL concentrations. In metabolic syndrome patients with CC genotype, mean score of "saturated fatty acid" subgroup was significantly higher compared with other genotypes; whereas, in healthy individuals, mean score of "fruit-vegetable" subgroup in individuals of CC and GG genotype was significantly higher (Pmetabolic risk factors. We also indicated a higher "saturated fatty acid" intake in CC genotype among metabolic syndrome patients.

  8. The temporal dynamics of global-to-local feedback in the formation of hierarchical motion patterns: psychophysics and computational simulations.

    Science.gov (United States)

    Hock, Howard S; Schöner, Gregor; Brownlow, Stacey; Taler, Dana

    2011-05-01

    Four motion quartets, each ambiguous with respect to the perception of parallel-path horizontal or vertical motion, were arranged in a diamond configuration. Both global parallel-path motion (the same motion axis for all the quartets), which is typical for multiquartet stimuli, and global rotational rocking are perceived. Experiment 1 indicated that rotational rocking is established at different levels of processing. Globally, larger displacements of each quartet's elements increase the angle of rotation and, thereby, the perception of rotational rocking. Locally, larger displacements have the opposite effect, weakening motion percepts. Experiment 2 showed that global-to-local feedback affects the local perception of rotation-consistent versus rotation-inconsistent motion directions. Experiment 3 provided evidence for hysteresis effects indicative of competition between global rotational rocking and parallel-path motion. The experimental results were simulated by a two-level dynamical model incorporating global-to-local feedback, with recurrent feedforward/feedback loops creating detection instabilities that amplify activation at both global and local levels of the rotational-rocking pattern.

  9. Relationship of coping and patterns of dependent behavior in patients with chronic pancreatitis of biliary and alcoholic etiology in aspect of differentiation of its medical and psychological support

    Directory of Open Access Journals (Sweden)

    Маріанна Владиславівна Маркова

    2015-08-01

    Full Text Available Choric pancreatitis is an actual medical and psychological problem in Ukraine. The aim of the work was to study the features of coping in patients with chronic pancreatitis of alcoholic and biliary etiology.Methods. For detecting coping-mechanisms the standard method WCQ Р of Lazarus was used. The study of addictive tendencies was carried out with the help of questionnaire AUDIT and UDIT-tests oriented on patterns of dependent behavior.Results. The study of features of coping-mechanisms and an addiction to dependent behavior in patients with chronic pancreatitis revealed intergroup and intragroup differences. Confrontation and low levels of self-control, responsibility and positive assessment were intrinsic for respondents with alcoholic etiology of pancreatitis. Women demonstrated the high addiction to the search of social support, men – to distancing. As to an addictive behavior there was revealed that the typical common tendencies were the consumption of coffee, alcohol, internet-dependence, the specific ones for women – TV, shopping-dependencies, for men – workaholism in patients with biliary and computer-addiction in patients with alcoholic chronic pancreatitis. Intergroup differences were demonstrated by an addiction to disorder of food behavior in patients with biliary and consumption of alcohol and smoking in respondents with alcoholic etiology of pancreatitis.Conclusions. The revealed differences in coping-strategies of patients with different nosological forms of chronic pancreatitis give important information for detecting the targets of medical and psychological influence and constructing of differentiated program of medical and psychological help to patients of this type

  10. The formation of the patterns of desert shrub communities on the Western Ordos Plateau, China: the roles of seed dispersal and sand burial.

    Science.gov (United States)

    Wang, Yange; Yang, Xiaohui; Shi, Zhongjie

    2013-01-01

    The western Ordos Plateau is a key area of shrub diversity and a National Nature Reserve of endangered shrub species in north-west China. Desert expansion is becoming the most important threat to these endangered species. However, little is known about the effects of sand burial on the dynamics of the shrub community. This study aims to investigate how the shrubs as a community and as different individual shrubs respond to the disturbances caused by the desert expansion. The approach used by this study is to separate the seed-dispersal strategy from the sand-burial forces that are involved in structuring the shrub communities at different disturbance stages. Four communities for different disturbance stages were surveyed by using 50×50 m plots. The individual shrubs were classified into coloniser and successor groups at the seed-dispersal stage and strong and weak sand-burial tolerance groups at the sand-expansion stage. We employed spatial point pattern analysis with null models for each community to examine the seed-dispersal strategy and sand-burial forces affecting community distribution patterns. At the seed-dispersal stage, the interactions between the colonisers and the successors showed significant positive correlation at a scale of 0-1 m and significant negative correlation at a scale of 2 m; significant negative correlations between the groups with strong and weak sand-burial tolerance in the early stage of sand expansion at scales of 3-6 m, and significant positive correlation in the later stage of sand expansion at a scale of 13 m, were found. Seed-dispersal strategy is a reasonable mechanism to explain the shrub community pattern formation in the earlier stages, whereas sand burial is the primary reason for the disappearance of shrubs with weak sand-burial tolerance, this irreversible disturbance causes homogenisation of the community structure and produces aging populations of shrub species. This has an important influence on the succession direction

  11. Digtets formater

    DEFF Research Database (Denmark)

    Schmidt, Michael Kallesøe; Rasmussen, Krista Stinne Greve; Skriver, Svend

    2017-01-01

    Løppenthin, Olga Ravn, Mikkel Thykier, Caspar Eric, and Simon Grotrian are discussed. By using the format as a point of departure rather than applying a more conventional practice of close reading, the authors argue for a broad-spectred approach to literary analysis which focuses on aspects of the conception......The article examines how key terminology of textual criticism can be taken as a starting point for the investigation of material aspects of contemporary poetry. The concepts in question are ‘text’ and ‘work’ as defined by Johnny Kondrup (2013). The authors take the view that the categorical...

  12. Modelling sociocognitive aspects of students' learning

    Science.gov (United States)

    Koponen, I. T.; Kokkonen, T.; Nousiainen, M.

    2017-03-01

    We present a computational model of sociocognitive aspects of learning. The model takes into account a student's individual cognition and sociodynamics of learning. We describe cognitive aspects of learning as foraging for explanations in the epistemic landscape, the structure (set by instructional design) of which guides the cognitive development through success or failure in foraging. We describe sociodynamic aspects as an agent-based model, where agents (learners) compare and adjust their conceptions of their own proficiency (self-proficiency) and that of their peers (peer-proficiency) in using explanatory schemes of different levels. We apply the model here in a case involving a three-tiered system of explanatory schemes, which can serve as a generic description of some well-known cases studied in empirical research on learning. The cognitive dynamics lead to the formation of dynamically robust outcomes of learning, seen as a strong preference for a certain explanatory schemes. The effects of social learning, however, can account for half of one's success in adopting higher-level schemes and greater proficiency. The model also predicts a correlation of dynamically emergent interaction patterns between agents and the learning outcomes.

  13. Constructal theory of pattern formation

    Directory of Open Access Journals (Sweden)

    A. Bejan

    2007-01-01

    Full Text Available This review article shows that the occurrence of macroscopic flow configuration is a universal natural phenomenon that can be explained and predicted on the basis of a principle of physics (the constructal law: "For a flow system to persist in time (to survive it must evolve in such a way that it provides easier and easier access to the currents that flow through it". The examples given in this article come from natural inanimate flow systems with configuration: duct cross-sections, open channel cross-sections, tree-shaped flow architectures, and turbulent flow structure (e.g., eddies, laminar lengths before transition. Other examples that are treated in the literature, and which support the constructal law, are the wedge-shape of turbulent shear layers, jets and plumes, the frequency of vortex shedding, Bénard convection in fluids and fluid-saturated porous media, dendritic solidification, the coalescence of solid parcels suspended in a flow, global atmospheric and oceanic circulation and climate, and virtually all architectural features of animal design. The constructal law stresses the importance of reserving a place for pure theory in research, and for constantly searching for new physics – new summarizing principles that are general, hence useful.

  14. The Formation of the Patterns of Desert Shrub Communities on the Western Ordos Plateau, China: The Roles of Seed Dispersal and Sand Burial

    Science.gov (United States)

    Wang, Yange; Yang, Xiaohui; Shi, Zhongjie

    2013-01-01

    The western Ordos Plateau is a key area of shrub diversity and a National Nature Reserve of endangered shrub species in north-west China. Desert expansion is becoming the most important threat to these endangered species. However, little is known about the effects of sand burial on the dynamics of the shrub community. This study aims to investigate how the shrubs as a community and as different individual shrubs respond to the disturbances caused by the desert expansion. The approach used by this study is to separate the seed-dispersal strategy from the sand-burial forces that are involved in structuring the shrub communities at different disturbance stages. Four communities for different disturbance stages were surveyed by using 50×50 m plots. The individual shrubs were classified into coloniser and successor groups at the seed-dispersal stage and strong and weak sand-burial tolerance groups at the sand-expansion stage. We employed spatial point pattern analysis with null models for each community to examine the seed-dispersal strategy and sand-burial forces affecting community distribution patterns. At the seed-dispersal stage, the interactions between the colonisers and the successors showed significant positive correlation at a scale of 0–1 m and significant negative correlation at a scale of 2 m; significant negative correlations between the groups with strong and weak sand-burial tolerance in the early stage of sand expansion at scales of 3–6 m, and significant positive correlation in the later stage of sand expansion at a scale of 13 m, were found. Seed-dispersal strategy is a reasonable mechanism to explain the shrub community pattern formation in the earlier stages, whereas sand burial is the primary reason for the disappearance of shrubs with weak sand-burial tolerance, this irreversible disturbance causes homogenisation of the community structure and produces aging populations of shrub species. This has an important influence on the succession

  15. Bacterial diversity and successional patterns during biofilm formation on freshly exposed basalt surfaces at diffuse-flow deep-sea vents

    Directory of Open Access Journals (Sweden)

    Lara K. Gulmann

    2015-09-01

    Full Text Available Many deep-sea hydrothermal vent systems are regularly impacted by volcanic eruptions, leaving fresh basalt where abundant animal and microbial communities once thrived. After an eruption, microbial biofilms are often the first visible evidence of biotic re-colonization. The present study is the first to investigate microbial colonization of newly exposed basalt surfaces in the context of vent fluid chemistry over an extended period of time (4 to 293 days by deploying basalt blocks within an established diffuse-flow vent at the 9o50’N vent field on the East Pacific Rise (EPR. Additionally, samples obtained after a recent eruption at the same vent field allowed for comparison between experimental results and those from natural microbial re-colonization. Over 9 months, the community changed from being composed almost exclusively of Epsilonproteobacteria to a more diverse assemblage, corresponding with a potential expansion of metabolic capabilities. The process of biofilm formation appears to generate similar surface-associated communities within and across sites by selecting for a subset of fluid-associated microbes, via species sorting. Furthermore, the high incidence of shared operational taxonomic units (OTUs over time and across different vent sites suggests that the microbial communities colonizing new surfaces at diffuse-flow vent sites might follow a predictable successional pattern.

  16. Poly(ADP-ribose) glycohydrolase and poly(ADP-ribose)-interacting protein Hrp38 regulate pattern formation during Drosophila eye development.

    Science.gov (United States)

    Ji, Yingbiao; Jarnik, Michael; Tulin, Alexei V

    2013-09-10

    Drosophila Hrp38, a homolog of human hnRNP A1, has been shown to regulate splicing, but its function can be modified by poly(ADP-ribosyl)ation. Notwithstanding such findings, our understanding of the roles of poly(ADP-ribosyl)ated Hrp38 on development is limited. Here, we have demonstrated that Hrp38 is essential for fly eye development based on a rough-eye phenotype with disorganized ommatidia observed in adult escapers of the hrp38 mutant. We also observed that poly(ADP-ribose) glycohydrolase (Parg) loss-of-function, which caused increased Hrp38 poly(ADP-ribosyl)ation, also resulted in the rough-eye phenotype with disrupted ommatidial lattice and reduced number of photoreceptor cells. In addition, ectopic expression of DE-cadherin, which is required for retinal morphogenesis, fully rescued the rough-eye phenotype of the hrp38 mutant. Similarly, Parg mutant eye clones had decreased expression level of DE-cadherin with orientation defects, which is reminiscent of DE-cadherin mutant eye phenotype. Therefore, our results suggest that Hrp38 poly(ADP-ribosyl)ation controls eye pattern formation via regulation of DE-cadherin expression, a finding which has implications for understanding the pathogenic mechanisms of Hrp38-related Fragile X syndrome and PARP1-related retinal degeneration diseases. Copyright © 2013 Elsevier B.V. All rights reserved.

  17. Electromyographic identification of spinal oscillator patterns and recouplings in a patient with incomplete spinal cord lesion: oscillator formation training as a method to improve motor activities.

    Science.gov (United States)

    Schalow, G; Blanc, Y; Jeltsch, W; Zäch, G A

    1996-08-01

    A patient with a strongly lesioned spinal cord, sub C5, relearned running, besides improving other movements, by an oscillator formation training (rhythmic, dynamic, stereotyped exercise). After 45 days of jumping on a springboard and other rhythm trainings, the patient was able to run 90 m in 41 s (7.9 km/h) (even 9.3 km/h 3 years after the lesion) besides marching (5.7 km/h), cycling, playing tennis and skiing. FF-type (alpha 1) (f = 8.3-11.4 Hz) and FR-type (alpha 2) (f = 6.7 Hz) motor unit firings were identified by electromyography (EMG) with surface electrodes by their oscillatory firing patterns in this patient. In EMG literature, the alpha 2-oscillatory firing is called "myokymic discharging". Alternating long and short oscillation periods were measured in FF-type motor units, with changing focus (change from long/short to short/long oscillation periods). The alternating mean period durations differed by approximately 10 ms. Transient synchronization of oscillatory firing FF-type motor units was observed with up to two phase relations per oscillation cycle. In recumbent position, the phase change in synchronization of two oscillatory firing motor units in the soleus muscle of one leg correlated with the change from alternating to symmetrical oscillatory firing of a third motor unit in the soleus muscle of the other leg. This measurement indicates that the alternating oscillatory firing of premotor neuronal networks is correlated with synchronization of oscillatory firing neuronal subnetworks, i.e., with coupling changes of oscillators, and is not due to reciprocal inhibition of half-centre oscillators as suggested by the change from alternating to symmetrical oscillatory firing. Coupling changes of oscillatory firing subnetworks to generate macroscopic (integrative) network functions are therefore a general organization form of the central nervous system (CNS), and are not related to rhythmic movements like walking or running only. It is proposed that

  18. Relationships among student attitudes, motivation, learning styles, learning strategies, patterns of learning, and achievement: A formative evaluation of distance education via Web-based courses

    Science.gov (United States)

    Shih, Ching-Chun

    The World Wide Web (WWW) is the latest in a long line of educational technologies, and the list of courses on it is growing daily. Formative evaluations would help educators enhance teaching and learning in Web-based courses. This study analyzed the relationships between student achievement and the following variables: attitudes, motivation, learning strategies, patterns of learning, learning styles, and selected demographics. It was a population study that included 99 students taking two non-major introductory biology courses offered over the WWW by Iowa State University in the fall of 1997. Seventy-four (75%) students completed a learning style test, an on-line questionnaire, and received a grade by the end of the semester. The learning style test was the Group Embedded Figures Test (GEFT), which classified students as either field-dependent or field-independent. The on-line questionnaire consisted of four scales (attitude, motivation, learning strategies, and patterns of learning), whose pilot-test reliabilities ranged from .71 to .91. The selected demographic variables were gender, class level, previous experience in subject area, hours per week studying and working, computer access, and types of students as off-campus, on-campus, or adult students. Over two-thirds of the students taking the Web-based courses were field-independent learners; however, there were no significant differences (.05 level) in achievement by learning style. Also, different backgrounds of students with different learning styles learned equally well in Web-based courses. The students enjoyed the convenience and self-controlled learning pace and were motivated by competition and high expectations in Web-based learning. They used most the learning strategies of finding important ideas from lectures and memorizing key words of important concepts and least the learning strategy of making charts or tables to organize the material. They seemed more interested in checking their grades than in

  19. Granular patterns

    CERN Document Server

    Aranson, Igor S

    2009-01-01

    This title presents a review of experiments and novel theoretical concepts needed to understand the mechanisms of pattern formation in granular materials. An effort is made to connect concepts and ideas developed in granular physics with new emergent fields, especially in biology, such as cytoskeleton dynamics.

  20. Aspects and Polymorphism in AspectJ

    DEFF Research Database (Denmark)

    Lorenz, David Harel; Ernst, Erik

    2003-01-01

    -oriented programming (AOP). In AOP, pieces of crosscutting behavior are extracted from the base code and localized in aspects, losing as a result their polymorphic capabilities while introducing new and unexplored issues. In this paper, we explore what kinds of polymorphism AOP languages should support, using AspectJ...... as the basis for the presentation. The results are not exclusive to AspectJ---aspectual polymorphism may make aspects in any comparable AOSD language more expressive and reusable across programs, while preserving safety....

  1. A cross-sectional study to determine the pattern, health-related problems and social aspects associated with alcohol use among adults of the rural population in Pune, Maharashtra

    Directory of Open Access Journals (Sweden)

    Vijaykumar K More

    2015-01-01

    Full Text Available Background: The increasing production, distribution, promotion and easy availability of alcohol have resulted in alcohol-related problems emerging as a major public health concern. It is a causal factor in more than 60 major types of diseases and injuries and results in approximately 2.5 million deaths each year. It is also a known risk factor for increasing crime, work absenteeism, loss of productivity, damage to property and physical and emotional abuse of women and children. Objectives: The aim was to find out the pattern, health related problems and social aspects associated with alcohol use among adults of a rural population of Pune, Maharashtra. Materials and Methods: A cross-sectional study was carried out in a rural field practice area of the Medical College in Pune among 300 respondents during January 12 and February 12. Pretested WHO designed alcohol survey questionnaire was used for collecting data by interview after obtaining informed consent. Results: Out of 300 respondents 45.7% (137 were found to be alcohol-user. Among these 35.77% were "daily drinkers.′ The most common alcoholic drink consumed was desi (country liquor (33.5%. Daily drinking was found to be related to adverse health related events. Poor health status, deprivation of family, increasing occurrence of unintentional and intentional injury, the greater extent of health problems were significantly higher among users. Conclusion: Alcohol consumption was high among adults in rural population. The study has also revealed negative impact of alcohol on both, user and their family.

  2. Molecular cloning, phylogenetic analysis, and expression patterns of LATERAL SUPPRESSOR-LIKE and REGULATOR OF AXILLARY MERISTEM FORMATION-LIKE genes in sunflower (Helianthus annuus L.).

    Science.gov (United States)

    Fambrini, Marco; Salvini, Mariangela; Pugliesi, Claudio

    2017-03-01

    The wild sunflower (Helianthus annuus) plants develop a highly branched form with numerous small flowering heads. The origin of a no branched sunflower, producing a single large head, has been a key event in the domestication process of this species. The interaction between hormonal factors and several genes organizes the initiation and outgrowth of axillary meristems (AMs). From sunflower, we have isolated two genes putatively involved in this process, LATERAL SUPPRESSOR (LS)-LIKE (Ha-LSL) and REGULATOR OF AXILLARY MERISTEM FORMATION (ROX)-LIKE (Ha-ROXL), encoding for a GRAS and a bHLH transcription factor (TF), respectively. Typical amino acid residues and phylogenetic analyses suggest that Ha-LSL and Ha-ROXL are the orthologs of the branching regulator LS and ROX/LAX1, involved in the growth habit of both dicot and monocot species. qRT-PCR analyses revealed a high accumulation of Ha-LSL transcripts in roots, vegetative shoots, and inflorescence shoots. By contrast, in internodal stems and young leaves, a lower amount of Ha-LSL transcripts was observed. A comparison of transcription patterns between Ha-LSL and Ha-ROXL revealed some analogies but also remarkable differences; in fact, the gene Ha-ROXL displayed a low expression level in all organs analyzed. In situ hybridization (ISH) analysis showed that Ha-ROXL transcription was strongly restricted to a small domain within the boundary zone separating the shoot apical meristem (SAM) and the leaf primordia and in restricted regions of the inflorescence meristem, beforehand the separation of floral bracts from disc flower primordia. These results suggested that Ha-ROXL may be involved to establish a cell niche for the initiation of AMs as well as flower primordia. The accumulation of Ha-LSL transcripts was not restricted to the boundary zones in vegetative and inflorescence shoots, but the mRNA activity was expanded in other cellular domains of primary shoot apical meristem as well as AMs. In addition, Ha

  3. HISTORICAL ASPECTS OF PHALLOPLASTY

    Directory of Open Access Journals (Sweden)

    P. S. Kyzlasov

    2017-01-01

    Full Text Available Reconstruction of the penis in transgender operations, amputation of the penis, congenital deformities and anomalies of the penis was and remains today an important issue in plastic surgery of the urogenital region. The only method to restore the penis is phalloplasty. In general, over the past decades, generations of clinicians have different ways and flaps for total fallouretheral reconstruction. Thus was formulated the characteristics of an ideal flap for the formation of neophallos, which should be safe, sensitive, without hair, and with long leg. However, despite the fact that the characteristics of a perfect flap, nowadays there is no “gold standard” in the formation of neophallos, as phalloplasty is a fairly complicated surgery, and the choice of method depends on many factors. The choice of methodology is determined by the plastics surgeon and to each patient is individual, depends on the etiology of the disease and the possibility of choosing the form of the donor’s transplant. This article presents a literature review devoted to the historical aspects of phalloplasty. In the article, in chronological order reflected the evolution of the different forming methods neofallos, phallourethrоplasty, describes their advantages and disadvantages.

  4. Spatiotemporal Wave Patterns: Information Dynamics

    Energy Technology Data Exchange (ETDEWEB)

    Mikhail Rabinovich; Lev Tsimring

    2006-01-20

    Pattern formation has traditionally been studied in non-equilibrium physics from the viewpoint of describing the basic structures and their interactions. While this is still an important area of research, the emphasis in the last few years has shifted towards analysis of specific properties of patterns in various complex media. For example, diverse and unexpected phenomena occur in neuro-like media that are characterized by highly non-trivial local dynamics. We carried out an active research program on analysis of spatio-temporal patterns in various physical systems (convection, oscillating fluid layer, soap film), as well as in neuro-like media, with an emphasis on informational aspects of the dynamics. Nonlinear nonequilibrium media and their discrete analogs have a unique ability to represent, memorize, and process the information contained in spatio-temporal patterns. Recent neurophysiological experiments demonstrated a certain universality of spatio-temporal representation of information by neural ensembles. Information processing is also revealed in the spatio-temporal dynamics of cellular patterns in nonequilibrium media. It is extremely important for many applications to study the informational aspects of these dynamics, including the origins and mechanisms of information generation, propagation and storage. Some of our results are: the discovery of self-organization of periodically oscillatory patterns in chaotic heterogeneous media; the analysis of the propagation of the information along a chaotic media as function of the entropy of the signal; the analysis of wave propagation in discrete non-equilibrium media with autocatalytic properties, which simulates the calcium dynamics in cellular membranes. Based on biological experiments we suggest the mechanism by which the spatial sensory information is transferred into the spatio-temporal code in the neural media. We also found a new mechanism of self-pinning in cellular structures and the related phenomenon

  5. Spontaneous Pattern Formation Induced by Bénard-Marangoni Convection for Sol-Gel-Derived Titania Dip-Coating Films: Effect of Co-solvents with a High Surface Tension and Low Volatility.

    Science.gov (United States)

    Uchiyama, Hiroaki; Matsui, Tadayuki; Kozuka, Hiromitsu

    2015-11-17

    Evaporation-driven surface tension gradient in the liquid layer often causes the convective flow, i.e., Bénard-Marangoni convection, resulting in the formation of cell-like patterns on the surface. Here, we prepared sol-gel-derived titania films from Ti(OC3H7(i))4 solutions by dip coating and discussed the effect of the addition of co-solvents with a high surface tension and low volatility on the spontaneous pattern formation induced by Bénard-Marangoni convection. Propylene glycol (PG, with a surface tension of 38.6 mN m(-1)) and dipropylene glycol (DPG, with a surface tension of 33.9 mN m(-1)) were added to the coating solutions containing 2-propanol (2-Pr, with a surface tension of 22.9 mN m(-1)) for controlling the evaporation-driven surface tension gradient in the coating layer on a substrate. During dip coating at a substrate withdrawal speed of 50 cm min(-1) in a thermostatic oven at 60 °C, linearly arranged cell-like patterns on a micrometer scale were spontaneously formed on the titania gel films, irrespective of the composition of coating solutions. Such surface patterns remained even after the heat treatment at 200 and 600 °C, where the densification and crystallization of the titania films progressed. The width and height of the cell-like patterns increased with increasing PG and DPG contents in the coating solutions, where the addition of PG resulted in the formation of cells with a larger height than DPG.

  6. EMOTIONAL OVERSTRAIN AS A FACTOR IN THE FORMATION OF MALADAPTATION AT STUDENTS OF MEDICAL COLLEGE

    Directory of Open Access Journals (Sweden)

    Natalia BURDUN

    2017-05-01

    Full Text Available Disclosed the current state of the problem of the increase in disadaptation states at students of medical college and described pathopsychological mechanisms of their formation. The basic aspects of adaptation in violation of the medical college students: the psycho-emotional state, behavior patterns and the level of aggression of the index.

  7. Submicrometer-resolution in situ imaging of the focus pattern of a soft x-ray laser by color center formation in LiF crystal.

    Science.gov (United States)

    Faenov, A Ya; Kato, Y; Tanaka, M; Pikuz, T A; Kishimoto, M; Ishino, M; Nishikino, M; Fukuda, Y; Bulanov, S V; Kawachi, T

    2009-04-01

    We demonstrate high quality, single-shot in situ imaging of the focused Ag x-ray laser (XRL) at 13.9 nm with 700 nm spatial resolution by color center formation in LiF. The flux and intensity for the color center formation in LiF are evaluated from the experimental data. Comparisons with previous reports show that the threshold x-ray flux for the color center formation in LiF for the 13.9 nm, 7 ps Ag XRL is 3 orders of magnitude less than that with the 46.9 nm, 2 ns capillary discharge Ar XRL.

  8. Formation of double ring patterns on Co{sub 2}MnSi Heusler alloy thin film by anodic oxidation under scanning probe microscope

    Energy Technology Data Exchange (ETDEWEB)

    Toutam, Vijaykumar; Singh, Sandeep [National Physical Laboratory, New Delhi - 110012 (India); Pandey, Himanshu [Condensed Matter - Low Dimensional Systems Laboratory, Department of Physics, Indian Institute of Technology, Kanpur - 208016 (India); Budhani, R. C. [National Physical Laboratory, New Delhi - 110012 (India); Condensed Matter - Low Dimensional Systems Laboratory, Department of Physics, Indian Institute of Technology, Kanpur - 208016 (India)

    2013-02-15

    Double ring formation on Co{sub 2}MnSi (CMS) films is observed at electrical breakdown voltage during local anodic oxidation (LAO) using atomic force microscope (AFM). Corona effect and segregation of cobalt in the vicinity of the rings is studied using magnetic force microscopy and energy dispersive spectroscopy. Double ring formation is attributed to the interaction of ablated material with the induced magnetic field during LAO. Steepness of forward bias transport characteristics from the unperturbed region of the CMS film suggest a non equilibrium spin contribution. Such mesoscopic textures in magnetic films by AFM tip can be potentially used for memory storage applications.

  9. An Orthogonal D2 O-Based Induction System that Provides Insights into d-Amino Acid Pattern Formation by Radical S-Adenosylmethionine Peptide Epimerases.

    Science.gov (United States)

    Morinaka, Brandon I; Verest, Marjan; Freeman, Michael F; Gugger, Muriel; Piel, Jörn

    2017-01-16

    Radical S-adenosyl methionine peptide epimerases (RSPEs) are an enzyme family that accomplishes regiospecific and irreversible introduction of multiple d-configured residues into ribosomally encoded peptides. Collectively, RSPEs can generate diverse epimerization patterns in a wide range of substrates. Previously, the lack of rapid methods to localize epimerized residues has impeded efforts to investigate the function and applicative potential of RSPEs. An efficient mass spectrometry-based assay is introduced that permits characterization of products generated in E. coli. Applying this to a range of non-natural peptide-epimerase combinations, it is shown that the d-amino acid pattern is largely but not exclusively dictated by the core peptide sequence, while the epimerization order is dependent on the enzyme-leader pair. RSPEs were found to be highly promiscuous, which allowed for modular introduction of peptide segments with defined patterns. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  10. Simultaneous Formation and Spatial Patterning of ZnO on ITO Surfaces by Local Laser-Induced Generation of Microbubbles in Aqueous Solutions of [Zn(NH3)4]2.

    Science.gov (United States)

    Fujii, Sho; Fukano, Ryuta; Hayami, Yoshihito; Ozawa, Hiroaki; Muneyuki, Eiro; Kitamura, Noboru; Haga, Masa-Aki

    2017-03-08

    We demonstrate the simultaneous formation and spatial patterning of ZnO nanocrystals on an indium-tin oxide (ITO) surface upon local heating using a laser (1064 nm) and subsequent formation of microbubbles. Laser irradiation of an ITO surface in aqueous [Zn(NH3)4]2+ solution (1.0 × 10-2 M at pH 12.0) under an optical microscope produced ZnO nanocrystals, the presence of which was confirmed by X-ray diffraction analysis and Raman microspectroscopy. Scanning the focused laser beam over the ITO surface generated a spatial ZnO pattern (height: ∼60 nm, width: ∼1 μm) in the absence of a template or mask. The Marangoni convection generated in the vicinity of the microbubbles resulted in a rapid concentration/accumulation of [Zn(NH3)4]2+ around the microbubbles, which led to the formation of ZnO at the solid-bubble-solution three-phase contact line around the bubbles and thus afforded ZnO nanocrystals on the ITO surface upon local heating with a laser.

  11. Stages and other aspects of the embryology of the parthenogenetic Marmorkrebs (Decapoda, Reptantia, Astacida).

    Science.gov (United States)

    Alwes, Frederike; Scholtz, Gerhard

    2006-04-01

    The early development of the parthenogenetic Marmorkrebs (marbled crayfish) is described with respect to external morphology, cell lineage, and segment formation. Due to its parthenogenetic reproduction mode, the question arises whether or not the marbled crayfish is a suitable model organism for developmental approaches. To address this question, we describe several aspects of the embryonic development until hatching. We establish ten stages based on characteristic external changes in the living eggs such as blastoderm formation, gastrulation process, formation and differentiation of the naupliar and post-naupliar segments, limb bud differentiation, and eye differentiation. The study of the post-naupliar cell division patterns, segment formation, and engrailed expression reveals distinct similarities to that of other freshwater crayfish. On this basis, we evaluate the possibility of a generalization of ontogenetic processes in the Marmorkrebs for either freshwater crayfish or other crustacean developmental systems.

  12. Wnt-5a and Wnt-7a are expressed in the developing chick limb bud in a manner suggesting roles in pattern formation along the proximodistal and dorsoventral axes.

    Science.gov (United States)

    Dealy, C N; Roth, A; Ferrari, D; Brown, A M; Kosher, R A

    1993-10-01

    The Wnt gene family encodes a group of secreted signalling molecules that have been implicated in the regulation of cell fate and pattern formation during embryogenesis. We have examined the patterns of expression of two members of the chicken Wnt family, Wnt-5a and Wnt-7a, during development of the chick limb bud. Wnt-5a is expressed in the apical ectodermal ridge which directs outgrowth of limb mesoderm. Wnt-5a also exhibits three quantitatively distinct domains of expression along the proximodistal (PD) axis of the limb mesoderm that may correspond to the regions which will give rise to the three distinct PD segments of the limb, the autopod, zeugopod, and stylopod. In contrast, Wnt-7a expression in the limb bud is specifically limited to the dorsal ectoderm. These observations suggest possible roles for Wnt-5a and Wnt-7a in pattern formation along the PD and dorsoventral axes of the developing chick limb bud. In addition, Wnt-5a and Wnt-7a exhibit spatially discrete domains of expression in several other regions of the chick embryo consistent with developmental roles for these genes in a variety of other tissues.

  13. Transformation Of Pattern Personality In E-Beam Lithography : A Conceptual Approach

    Science.gov (United States)

    Coopmans, F.; Froyen, E.; Jonckheere, R.

    1988-06-01

    This paper discusses the concept of pattern personality and its application to the characterization of different software and technological aspects in E-Beam direct write lithography. In this approach the personality of a pattern is related to a spectrum of the characteristic dimensions of a design. We explain simple techniques to obtain these spectra and indicate how they can be implied to predict and decide on the best writing strategy. Pattern personality is intended to be used as a compressed format that still contains enough information to base decisions on and compute the impact of processing steps on the pattern fidelity.

  14. Aspects, Dependencies, and Interactions

    NARCIS (Netherlands)

    Chitchyan, R; Fabry, J.; Bergmans, Lodewijk; Südholt, M.; Consel, C.

    2007-01-01

    For Aspect-Oriented Software Development (AOSD) the topic of Aspects, Dependencies and Interactions is of high importance across the whole range of development activities – from requirements engineering through to language design. Aspect interactions must be adequately addressed all across the

  15. Discovering Early Aspects

    NARCIS (Netherlands)

    Baniassad, E.; Clements, P.; Araujo, J.; Moreira, A; Rashid, A.; Tekinerdogan, B.

    2006-01-01

    Traditionally, aspect-oriented software development (AOSD) has focused on the software life cycle's implementation phase: aspects are identified and captured mainly in code. But aspects are evident earlier in the life cycle, such as during requirements gathering and architecture development.

  16. AspectKE*

    DEFF Research Database (Denmark)

    Yang, Fan; Masuhara, Hidehiko; Aotani, Tomoyuki

    2010-01-01

    Enforcing security policies to distributed systems is difficult, in particular, when a system contains untrusted components. We designed AspectKE*, a distributed AOP language based on a tuple space, to tackle this issue. In AspectKE*, aspects can enforce access control policies that depend...... on future behavior of running processes. One of the key language features is the predicates and functions that extract results of static program analysis, which are useful for defining security aspects that have to know about future behavior of a program. AspectKE* also provides a novel variable binding...

  17. Near-wake flow patterns in the lee of adjacent obstacles and their implications for the formation of sand drifts: A wind tunnel simulation of the effects of gap spacing

    Science.gov (United States)

    Luo, Wanyin; Dong, Zhibao; Qian, Guangqiang; Lu, Junfeng

    2014-05-01

    A wind tunnel and particle image velocimetry were used to study the ground-level mean secondary airflow patterns and statistical turbulence quantities in the lee of adjacent rectangular obstacles, the influence of gap spacing on the near-wake flow patterns, and their role in the onset of sand particle deposition and sand drift formation. The flows separated both horizontally and vertically, and paired vortices shed from each of the structures created reversed-flow cells downwind of the obstacles. Four wake patterns (single vortex flow, gap-enveloped flow, wake-interference flow, and couple vortex-streets) were observed behind obstacle pairs with different gap ratios. In the first three flow modes, airflow increased through the gap, but decreased a short distance downwind and then recovered to a steady state as the air stream merged with the general flow. The larger the gap spacing between obstacles, the more quickly wind velocity recovered downwind of the gap. Vorticity and kinematic Reynolds stress exhibited different features for the four wake patterns, resulting in different sand particle entrainment capacities in the lee of the adjacent obstacles.

  18. Expression of a gymnosperm PIN homologous gene correlates with auxin immunolocalization pattern at cotyledon formation and in demarcation of the procambium during Picea abies somatic embryo development and in seedling tissues.

    Science.gov (United States)

    Palovaara, Joakim; Hallberg, Henrik; Stasolla, Claudio; Luit, Bert; Hakman, Inger

    2010-04-01

    In seed plants, the body organization is established during embryogenesis and is uniform across gymnosperms and angiosperms, despite differences during early embryogeny. Evidence from angiosperms implicates the plant hormone auxin and its polar transport, mainly established by the PIN family of auxin efflux transporters, in the patterning of embryos. Here, PaPIN1 from Norway spruce (Picea abies [L.] Karst.), a gene widely expressed in conifer tissues and organs, was characterized and its expression and localization patterns were determined with reverse transcription polymerase chain reaction and in situ hybridization during somatic embryo development and in seedlings. PaPIN1 shares the predicted structure of other PIN proteins, but its central hydrophilic loop is longer than most PINs. In phylogenetic analyses, PaPIN1 clusters with Arabidopsis thaliana (L.) Heynh. PIN3, PIN4 and PIN7, but its expression pattern also suggests similarity to PIN1. The PaPIN1 expression signal was high in the protoderm of pre-cotyledonary embryos, but not if embryos were pre-treated with the auxin transport inhibitor N-1-naphthylphthalamic acid (NPA). This, together with a high auxin immunolocalization signal in this cell layer, suggests a role of PaPIN1 during cotyledon formation. At later stages, high PaPIN1 expression was observed in differentiating procambium, running from the tip of incipient cotyledons down through the embryo axis and to the root apical meristem (RAM), although the mode of RAM specification in conifer embryos differs from that of most angiosperms. Also, the PaPIN1 in situ signal was high in seedling root tips including root cap columella cells. The results thus suggest that PaPIN1 provides an ancient function associated with auxin transport and embryo pattern formation prior to the separation of angiosperms and gymnosperms, in spite of some morphological differences.

  19. Two-dimensional patterning by a trapping/depletion mechanism: the role of TTG1 and GL3 in Arabidopsis trichome formation.

    Directory of Open Access Journals (Sweden)

    Daniel Bouyer

    2008-06-01

    Full Text Available Trichome patterning in Arabidopsis serves as a model system to study how single cells are selected within a field of initially equivalent cells. Current models explain this pattern by an activator-inhibitor feedback loop. Here, we report that also a newly discovered mechanism is involved by which patterning is governed by the removal of the trichome-promoting factor TRANSPARENT TESTA GLABRA1 (TTG1 from non-trichome cells. We demonstrate by clonal analysis and misexpression studies that Arabidopsis TTG1 can act non-cell-autonomously and by microinjection experiments that TTG1 protein moves between cells. While TTG1 is expressed ubiquitously, TTG1-YFP protein accumulates in trichomes and is depleted in the surrounding cells. TTG1-YFP depletion depends on GLABRA3 (GL3, suggesting that the depletion is governed by a trapping mechanism. To study the potential of the observed trapping/depletion mechanism, we formulated a mathematical model enabling us to evaluate the relevance of each parameter and to identify parameters explaining the paradoxical genetic finding that strong ttg1 alleles are glabrous, while weak alleles exhibit trichome clusters.

  20. Lrp4 and Wise interplay controls the formation and patterning of mammary and other skin appendage placodes by modulating Wnt signaling.

    Science.gov (United States)

    Ahn, Youngwook; Sims, Carrie; Logue, Jennifer M; Weatherbee, Scott D; Krumlauf, Robb

    2013-02-01

    The future site of skin appendage development is marked by a placode during embryogenesis. Although Wnt/β-catenin signaling is known to be essential for skin appendage development, it is unclear which cellular processes are controlled by the signaling and how the precise level of the signaling activity is achieved during placode formation. We have investigated roles for Lrp4 and its potential ligand Wise (Sostdc1) in mammary and other skin appendage placodes. Lrp4 mutant mice displayed a delay in placode initiation and changes in distribution and number of mammary precursor cells leading to abnormal morphology, number and position of mammary placodes. These Lrp4 mammary defects, as well as limb defects, were associated with elevated Wnt/β-catenin signaling and were rescued by reducing the dose of the Wnt co-receptor genes Lrp5 and Lrp6, or by inactivating the gene encoding β-catenin. Wise-null mice phenocopied a subset of the Lrp4 mammary defects and Wise overexpression reduced the number of mammary precursor cells. Genetic epistasis analyses suggest that Wise requires Lrp4 to exert its function and that, together, they have a role in limiting mammary fate, but Lrp4 has an early Wise-independent role in facilitating placode formation. Lrp4 and Wise mutants also share defects in vibrissa and hair follicle development, suggesting that the roles played by Lrp4 and Wise are common to skin appendages. Our study presents genetic evidence for interplay between Lrp4 and Wise in inhibiting Wnt/β-catenin signaling and provides an insight into how modulation of Wnt/β-catenin signaling controls cellular processes important for skin placode formation.

  1. Nanodot and nanocrystal pattern formation and luminescent properties of BiB{sub 3}O{sub 6} glasses after moderate energy ion beam sputtering

    Energy Technology Data Exchange (ETDEWEB)

    Plaza, J.L., E-mail: joseluis.plaza@uam.es [Laboratorio de Crecimiento de Cristales, Dpto. de Fisica de Materiales, Facultad de Ciencias, Universidad Autonoma de Madrid, Cantoblanco, 28049 Madrid (Spain); Martinez, O., E-mail: oscar@fmc.uva.es [GdS-Optronlab, Dpto. Fisica Materia Condensada, Universidad de Valladolid, Edificio I-D, Paseo de Belen 1, 47011 Valladolid (Spain); Hortelano, V., E-mail: vhorsan@gmail.com [GdS-Optronlab, Dpto. Fisica Materia Condensada, Universidad de Valladolid, Edificio I-D, Paseo de Belen 1, 47011 Valladolid (Spain); Bensalah, H., E-mail: bensalahhakima@yahoo.fr [Laboratorio de Crecimiento de Cristales, Dpto. de Fisica de Materiales, Facultad de Ciencias, Universidad Autonoma de Madrid, Cantoblanco, 28049 Madrid (Spain); Dieguez, E., E-mail: ernesto.dieguez@uam.es [Laboratorio de Crecimiento de Cristales, Dpto. de Fisica de Materiales, Facultad de Ciencias, Universidad Autonoma de Madrid, Cantoblanco, 28049 Madrid (Spain)

    2012-02-01

    In this work we study the nanopatterning effect on the surface of BIBO glasses by means of Ion Beam Sputtering (IBS), using moderate energy (<5 kV) Ar ions. The analysis, changing the energy of the Ar ions, has demonstrated the formation of nanodots, nanorripples, and nanopyramids. We have also analysed the dependence of the nanopatterns on the sample thickness for the same experimental conditions. The sizes of the nanodots have been analysed by AFM, while their optical properties studied by means of {mu}-Raman/{mu}-photoluminescence techniques.

  2. Health in post-Black Death London (1350-1538): age patterns of periosteal new bone formation in a post-epidemic population.

    Science.gov (United States)

    DeWitte, Sharon N

    2014-10-01

    Previous research has shown that the Black Death targeted older adults and individuals who had been previously exposed to physiological stressors. This project investigates whether this selectivity of the Black Death, combined with post-epidemic rising standards of living, led to significant improvements in patterns of skeletal stress markers, and by inference in health, among survivors and their descendants. Patterns of periosteal lesions (which have been previously shown, using hazard analysis, to be associated with elevated risks of mortality in medieval London) are compared between samples from pre-Black Death (c. 1,000-1,300, n = 464) and post-Black Death (c. 1,350-1,538, n = 133) London cemeteries. To avoid the assumptions that stress markers alone provide a direct measure of health and that a change in frequencies of the stress marker by itself indicates changes in health, this study assesses age-patterns of the stress marker to obtain a more nuanced understanding of the population-level effects of an epidemic disease. Age-at-death in these samples is estimated using transition analysis, which provides point estimates of age even for the oldest adults in these samples and thus allows for an examination of physiological stress across the lifespan. The frequency of lesions is significantly higher in the post-Black Death sample, which, at face value, might indicate a general decline in health. However, a significant positive association between age and periosteal lesions, as well as a significantly higher number of older adults in the post-Black Death sample more likely suggests improvements in health following the epidemic. © 2014 Wiley Periodicals, Inc.

  3. The effect of a crosslinking chemical reaction on pattern formation in viscous fingering of miscible fluids in a Hele-Shaw cell

    Science.gov (United States)

    Bunton, Patrick H.; Tullier, Michael P.; Meiburg, Eckart; Pojman, John A.

    2017-10-01

    Viscous fingering can occur in fluid motion whenever a high mobility fluid displaces a low mobility fluid in a Darcy type flow. When the mobility difference is primarily attributable to viscosity (e.g., flow between the two horizontal plates of a Hele-Shaw cell), viscous fingering (VF) occurs, which is sometimes termed the Saffman-Taylor instability. Alternatively, in the presence of differences in density in a gravity field, buoyancy-driven convection can occur. These instabilities have been studied for decades, in part because of their many applications in pollutant dispersal, ocean currents, enhanced petroleum recovery, and so on. More recent interest has emerged regarding the effects of chemical reactions on fingering instabilities. As chemical reactions change the key flow parameters (densities, viscosities, and concentrations), they may have either a destabilizing or stabilizing effect on the flow. Hence, new flow patterns can emerge; moreover, one can then hope to gain some control over flow instabilities through reaction rates, flow rates, and reaction products. We report effects of chemical reactions on VF in a Hele-Shaw cell for a reactive step-growth cross-linking polymerization system. The cross-linked reaction product results in a non-monotonic viscosity profile at the interface, which affects flow stability. Furthermore, three-dimensional internal flows influence the long-term pattern that results.

  4. Formalising Interaction Patterns

    Science.gov (United States)

    Bottoni, Paolo; Guerra, Esther; de Lara, Juan

    The use of patterns as a way to refer to common solutions in the field of interface design is becoming widespread. However, contrary to the situation for software patterns, definitions of interaction patterns do not enjoy a common standard yet. Moreover, patterns are developed for design aspects as diverse as: user experience, layout, action coordination, or specification of entire widgets, reflecting the complexity of the field. As a consequence, research on formalisation of interaction patterns is not developed, and few attempts have been made to extend techniques developed for design pattern formalisation. We show here how an extension to an approach to pattern formalisation recently proposed by the authors can be usefully employed to formalize some classes of interaction patterns, to express relations like subtyping and composition, and to detect conflicts.

  5. Software Architecture Patterns for System Administration Support

    NARCIS (Netherlands)

    Wiebe Wiersema; Christian Köppe; Ronald Bijvank

    2013-01-01

    Many quality aspects of software systems are addressed in the existing literature on software architecture patterns. But the aspect of system administration seems to be a bit overlooked, even though it is an important aspect too. In this work we present three software architecture patterns that,

  6. Spatial Turing-type Pattern Formation in a Model of Signal Transduction Involving Membrane-based Receptors Coupled by G Proteins

    Directory of Open Access Journals (Sweden)

    Wannapong Triampo

    2006-01-01

    Full Text Available In this paper, a model of signaling pathways involving G proteins is investigated. The model incorporates reaction-diffusion mechanisms in which various reactants participate inside and on the extra-cellular surface membrane. The messenger molecules may diffuse over the surface of the cell membrane and signal transduction across the cell membrane is mediated by membrane receptor bound proteins which connect the genetically controlled biochemical intra-cellular reactions to the production of the second messenger, leading to desired functional responses. Dynamic and steady-state properties of the model are then investigated through weakly nonlinear stability analysis. Turing-type patterns are shown to form robustly under different delineating conditions on the system parameters. The theoretical predictions are then discussed in the context of some recently reported experimental evidence.

  7. Transfer price: theoretical and applied aspects

    OpenAIRE

    Yatskevych Inna V.

    2013-01-01

    Modern conditions of development of entrepreneurial activity result in fundamental reformation of relations between economic subjects. Not only the subjects change, but also the forms of their interaction with each other on the basis of partner relations. One of the mechanisms of formation and development of partner relations is the transfer price, which is a prerequisite of systematisation of theoretical aspects of formation of the transfer price (notions, essence, participant of price forma...

  8. THE ECONOMIC ASPECTS OF THE SPATIAL BOWELUSING

    Directory of Open Access Journals (Sweden)

    E.A. Atamanova

    2008-12-01

    Full Text Available The ways of formation of the spatial bowelusing in global economy and in Russia were defined. The dependence of the increasing of mineral-source resources consumption on the level of global economy industry was revealed. Some economic aspects of spatial bowelusing, its problems and perspectives in conditions of globalization in this sphere at the way of global mineral-source base formation were designated.

  9. Pedagogical aspects of effective use of simulator "Straps with ring" during the formation motor skills of pupils of 10 classes during the skiing training in the lessons of physical culture

    Directory of Open Access Journals (Sweden)

    M.G. Lazarenko

    2014-12-01

    Full Text Available Purpose : to develop a system of ski training exercises using a functional simulator at physical training lessons. Material : The study took 90 young men attended 10 class. To determine the level of formation of motor skills of pupils were tested on 7 indicators: skiing skating style 5 km; skiing classic style 3 km; pulling up on the bar; long jump with space, running 60 meters, running 3 miles, 4x9 meters shuttle run. A year after the first experiment was conducted a second experiment. Results : The developed and adapted to the physical education class simulator exercises which compounded the gravity load and moving straps with rings. The test results confirmed that the proposed method makes it possible to more effectively shape the motor skills of pupils in the process of ski training at physical training lessons. Conclusions : It is recommended to the lessons of physical training on use of ski training complex of 22 exercises that will most effectively influence the formation of motor skills of pupils.

  10. Pedagogical aspects of effective use of simulator "Straps with ring" during the formation motor skills of pupils of 10 classes during the skiing training in the lessons of physical culture

    Directory of Open Access Journals (Sweden)

    Lazarenko M.G.

    2014-11-01

    Full Text Available Purpose : to develop a system of ski training exercises using a functional simulator at physical training lessons. Material : The study took 90 young men attended 10 class. To determine the level of formation of motor skills of pupils were tested on 7 indicators: skiing skating style 5 km; skiing classic style 3 km; pulling up on the bar; long jump with space, running 60 meters, running 3 miles, 4x9 meters shuttle run. A year after the first experiment was conducted a second experiment. Results : The developed and adapted to the physical education class simulator exercises which compounded the gravity load and moving straps with rings. The test results confirmed that the proposed method makes it possible to more effectively shape the motor skills of pupils in the process of ski training at physical training lessons. Conclusions : It is recommended to the lessons of physical training on use of ski training complex of 22 exercises that will most effectively influence the formation of motor skills of pupils.

  11. Declarative Aspect Composition

    NARCIS (Netherlands)

    Nagy, I.; Bergmans, Lodewijk; Aksit, Mehmet

    2004-01-01

    Aspect-oriented languages provide means to attach certain program units (e.g. advice, filters) to a given set of join points. It is possible that not just a single , but several units need to execute at the same join point. Aspects that specify the insertion of these units are said to "share" the

  12. Aspects, Dependencies and Interactions

    NARCIS (Netherlands)

    Sanen, F.; Chitchyan, R; Bergmans, Lodewijk; Fabry, J.; Sudholt, M.; Mehner, K.; Cebulla, M.

    2008-01-01

    The topics on aspects, dependencies and interactions are among the key remaining challenges to be tackled by the Aspect-Oriented Software Development (AOSD) community to enable a wide adoption of AOSD technology. This second workshop, organized and supported by the AOSD-Europe project, aimed to

  13. Aspect-Oriented Programming

    NARCIS (Netherlands)

    Bergmans, Lodewijk; Videira Lopes, Cristina; Moreira, Ana; Demeyer, Serge

    1999-01-01

    Aspect-oriented programming is a promising idea that can improve the quality of software by reduce the problem of code tangling and improving the separation of concerns. At ECOOP'97, the first AOP workshop brought together a number of researchers interested in aspect-orientation. At ECOOP'98, during

  14. Septins are important for cell polarity, septation and asexual spore formation in Neurospora crassa and show different patterns of localisation at germ tube tips.

    Directory of Open Access Journals (Sweden)

    Adokiye Berepiki

    Full Text Available Septins are GTP-binding cytoskeletal proteins that contribute to cell polarity, vesicle trafficking, cytokinesis and cell morphogenesis. Here we have characterised the six septins encoded by the genome of the model filamentous fungus Neurospora crassa. Analysis of septin null mutants demonstrated that septins limit the sites of emergence of germ tubes and are important for septation and conidiation in N. crassa. Septins constituted a range of different higher-order structures in N. crassa - rings, loops, fibres, bands, and caps - which can co-exist within the same cell. They showed different patterns of localisation at germ tube tips, with GFP-CDC-10 and CDC-11-GFP forming a subapical collar with lower signal intensity at the tip apex, CDC-3-GFP and CDC-12-GFP organized as a cap at the tip apex and GFP-ASP-1 forming an extended subapical collar. Purification of the septin complex and mass spectrometry of isolated proteins revealed that the septin complex consists predominantly of CDC-3, CDC-10, CDC-11 and CDC-12. Immunoprecipitation of the putative septin ASP-1 revealed that this protein interacts with the core septin complex.

  15. Socio-philosophical aspects of Gestalt psychology

    OpenAIRE

    Zoriy, Nina

    2015-01-01

    The article analyzes the scientific concept of F. Perls in Gestalt psychology and Gestalt therapy. The socio-philosophical aspect of Freudianism is singled out in the context of the development of Gestalt psychology. Specific features of the influence of existential philosophy on the formation of the scientific school of Gestalt psychology are determined.

  16. Polygon patterns on Europa

    Science.gov (United States)

    Smalley, I. J.

    1981-01-01

    The formation of polygon patterns in the development of crack networks in cooling basalt flows and similar contracting systems, and under natural conditions in an essentially unbounded basalt flow, are analyzed, and the characteristics of hexagonal and pentagonal patterns in isotropic stress fields are discussed.

  17. Children's participation in family food consumption patterns

    DEFF Research Database (Denmark)

    Brunsø, Karen; Christensen, Pia Haudrup

    2006-01-01

    This paper presents a theoretical framework for researching children and food consumption in the family. The proposed framework draws on contemporary social science approaches to the study of family decision making, food consumption patterns and routines, and consumer competence and food......-related lifestyle in order to understand children and families through their everyday practices. It suggest a new emphasis on children as active agents in the formation of family food consumption patterns and looks at children's food choices as embedded in everyday family life. We focus especially on the construct...... of the "Consumer Competence" of the child as one important aspect determining the way a child is involved in and gains influence over family food consumption. The paper also demonstrates how a mixed methods design, employing ethnographic and survey techniques, involves advances in methodological and analytical...

  18. Further Aspects of Ochratoxin A-Cation Interactions: Complex Formation with Zinc Ions and a Novel Analytical Application of Ochratoxin A-Magnesium Interaction in the HPLC-FLD System

    Directory of Open Access Journals (Sweden)

    Miklós Poór

    2014-04-01

    Full Text Available Ochratoxin A (OTA is a mycotoxin produced by different Aspergillus and Penicillium species. Since its mechanism of action is not fully understood yet, it is important to gain further insight into different interactions of OTA at the molecular level. OTA is found worldwide in many foods and drinks. Moreover, it can also be detected in human and animal tissues and body fluids, as well. Therefore, the development of highly sensitive quantitative methods for the determination of OTA is of utmost importance. OTA most likely forms complexes with divalent cations, both in cells and body fluids. In the present study, the OTA-zinc interaction was investigated and compared to OTA-magnesium complex formation using fluorescence spectroscopy and molecular modeling. Our results show that zinc(II ion forms a two-fold higher stable complex with OTA than magnesium(II ion. In addition, based on the enhanced fluorescence emission of OTA in its magnesium-bound form, a novel RP-HPLC-fluorescence detector (FLD method was also established. Our results highlight that the application of magnesium chloride in alkaline eluents results in an approximately two-fold increase in sensitivity using the HPLC-FLD technique.

  19. Effectiveness of a formative program about transcultural nursing on aspects of the mental health on immigrants children between 12 and 17 years old diagnosed of stress for movement syndrome

    Directory of Open Access Journals (Sweden)

    Elvira María Pértega Andía

    2010-01-01

    Full Text Available Objectives: To value the efficiency of a formative program for Transcultural Nursing on the level of anxiety, emotional balance and social implication for children of immigrant population diagnosed of Syndrome of Stress for Movement.Methodology: Clinical random Essay with assignment for groups. There will be realized in the Area 6 of the Community of Madrid, the selection of the participants will realize in the centers of Primary care selected as group control and experimentally.An evaluation will be realized in the center of Mental Health of all the participants and the results will be compared after six months in health of all the participants (group control and experimental, as well as the nursing aims and the interventions realized in every center.The evaluation of every variable will carry out by means of validated instruments and by means of the utilization of nursing taxonomy.The population size belongs 14000 individuals and there will select a sample of 156 children, calculated for a mistake alpha of 0,05 a power of 0,8 and an estimated effect of 0,4.The analysis of information will be realized by comparison pre and post, as well as intergroups, besides the descriptive analysis of the variables.

  20. Quantification of variability in trichome patterns

    NARCIS (Netherlands)

    Greese, B.; Huelskamp, M.; Fleck, C.

    2014-01-01

    While pattern formation is studied in various areas of biology, little is known about the intrinsic noise leading to variations between individual realizations of the pattern. One prominent example for de novo pattern formation in plants is the patterning of trichomes on Arabidopsis leaves, which

  1. Foundational aspects of security

    DEFF Research Database (Denmark)

    Chatzikokolakis, Konstantinos; Mödersheim, Sebastian Alexander; Palamidessi, Catuscia

    2014-01-01

    This Special Issue of the Journal of Computer Security focuses on foundational aspects of security, which in recent years have helped change much of the way we think about and approach system security.......This Special Issue of the Journal of Computer Security focuses on foundational aspects of security, which in recent years have helped change much of the way we think about and approach system security....

  2. Microwave synthesis and photocatalytic activities of ZnO bipods with different aspect ratios

    Energy Technology Data Exchange (ETDEWEB)

    Sun, Fazhe; Zhao, Zengdian [Analysis and Testing Center, Shandong University of Technology, Zibo 255100 (China); Qiao, Xueliang, E-mail: xuelqiao@163.com [State Key Laboratory of Plastic Forming Simulation and Die and Mould Technology, Huazhong University of Science and Technology, Wuhan 430074, Hubei (China); Tan, Fatang; Wang, Wei [State Key Laboratory of Plastic Forming Simulation and Die and Mould Technology, Huazhong University of Science and Technology, Wuhan 430074, Hubei (China)

    2016-02-15

    Highlights: • We synthesized linked ZnO nanorods by a facile microwave method. • The effect of reaction parameters on ZnO was investigated. • ZnO bipods with different aspect ratios were prepared. • The photocatalytic performance of ZnO bipods was evaluated. - Abstract: Linked ZnO nanorods have been successfully prepared via a facile microwave method without any post-synthesis treatment. The X-ray diffraction (XRD) patterns indicated the precursor had completely transformed into the pure ZnO crystal. The images of field emitting scanning electron microscope (FESEM) and transmission electron microscope (TEM) showed that linked ZnO nanorods consisted predominantly of ZnO bipods. The formation process of the ZnO bipods was clearly discussed. ZnO bipods with different aspect ratios have been obtained by tuning the concentrations of reagents and microwave power. Moreover, the photocatalytic performance of ZnO bipods with different aspect ratios for degradation of methylene blue was systematically evaluated. The results of photocatalytic experiments showed that the photocatalytic activity increased with the aspect ratios of ZnO bipods increased. The reason is that ZnO bipods with larger aspect ratio have higher surface area, which can absorb more MB molecules to react with ·OH radicals.

  3. Directed self-assembly patterning strategies for phase change memory applications

    Science.gov (United States)

    Bruce, Robert L.; Fraczak, Gloria; Papalia, John M.; Tsai, HsinYu; BrightSky, Matt; Miyazoe, Hiroyuki; Zhu, Yu; Engelmann, Sebastian U.; Lung, Hsiang-Lan; Masuda, Takeshi; Suu, Koukou; Liu, Chi-Chun; Tang, Hao; Arnold, John C.; Felix, Nelson; Lam, Chung H.

    2017-03-01

    Phase change material (PCM)-based memory cells have shown promise as an enabler for low power, high density memory. There is a current need to develop and improve patterning strategies to attain smaller device dimensions. In this work, two methods of patterning of PCM device structures was achieved using directed self-assembly (DSA) patterning: the formation of a high aspect ratio pore designed for atomic layer deposition (ALD) of etch damage-free PCM, and pillar formation by image reversal and plasma etch transfer into a PCM film. We show significant CD reduction (180 nm to 20 nm) of a lithographically defined hole by plasma etch shrink, DSA spin-coat and subsequent high selectivity pattern transfer. We then demonstrate structural fabrication of both DSA-defined SiN pores with ALD PCM and DSA-defined PCM pillars. Challenges to both pore and pillar fabrication are discussed.

  4. Optimising AspectJ

    DEFF Research Database (Denmark)

    Avgustinov, Pavel; Christensen, Aske Simon; Hendren, Laurie

    2005-01-01

    AspectJ, an aspect-oriented extension of Java, is becoming increasingly popular. However, not much work has been directed at optimising compilers for AspectJ. Optimising AOP languages provides many new and interesting challenges for compiler writers, and this paper identifies and addresses three...... such challenges. First, compiling around advice efficiently is particularly challenging. We provide a new code generation strategy for around advice, which (unlike previous implementations) both avoids the use of excessive inlining and the use of closures. We show it leads to more compact code, and can also....... We present new techniques to minimise or eliminate the overhead of cflow using both intra- and inter-procedural analyses. Third, we have addressed the general problem of how to structure an optimising compiler so that traditional analyses can be easily adapted to the AOP setting. We have implemented...

  5. Requirements Engineering and Aspects

    Science.gov (United States)

    Yu, Yijun; Niu, Nan; González-Baixauli, Bruno; Mylopoulos, John; Easterbrook, Steve; Do Prado Leite, Julio Cesar Sampaio

    A fundamental problem with requirements engineering (RE) is to validate that a design does satisfy stakeholder requirements. Some requirements can be fulfilled locally by designed modules, where others must be accommodated globally by multiple modules together. These global requirements often crosscut with other local requirements and as such lead to scattered concerns. We explore the possibility of borrowing concepts from aspect-oriented programming (AOP) to tackle these problems in early requirements. In order to validate the design against such early aspects, we propose a framework to trace them into coding and testing aspects. We demonstrate the approach using an open-source e-commerce platform. In the conclusion of this work, we reflect on the lessons learnt from the case study on how to fit RE and AOP research together.

  6. Elastohydrodynamics and kinetics of protein patterning in the immunological synapse

    CERN Document Server

    Carlson, Andreas

    2015-01-01

    The cellular basis for the adaptive immune response during antigen recognition relies on a specialized protein interface known as the immunological synapse (IS). Understanding the biophysical basis for protein patterning by deciphering the quantitative rules for their formation and motion is an important aspect of characterizing immune cell recognition and thence the rules for immune system activation. We propose a minimal mathematical model for the physical basis of membrane protein patterning in the IS, which encompass membrane mechanics, protein binding kinetics and motion, and fluid flow in the synaptic cleft. Our theory leads to simple predictions for the spatial and temporal scales of protein cluster formation, growth and arrest as a function of membrane stiffness, rigidity and kinetics of the adhesive proteins, and the fluid in the synaptic cleft. Numerical simulations complement these scaling laws by quantifying the nucleation, growth and stabilization of proteins domains on the size of the cell. Dire...

  7. Contrasting patterns of evolution of 45S and 5S rDNA families uncover new aspects in the genome constitution of the agronomically important grass Thinopyrum intermedium (Triticeae).

    Science.gov (United States)

    Mahelka, Václav; Kopecky, David; Baum, Bernard R

    2013-09-01

    We employed sequencing of clones and in situ hybridization (genomic and fluorescent in situ hybridization [GISH and rDNA-FISH]) to characterize both the sequence variation and genomic organization of 45S (herein ITS1-5.8S-ITS2 region) and 5S (5S gene + nontranscribed spacer) ribosomal DNA (rDNA) families in the allohexaploid grass Thinopyrum intermedium. Both rDNA families are organized within several rDNA loci within all three subgenomes of the allohexaploid species. Both families have undergone different patterns of evolution. The 45S rDNA family has evolved in a concerted manner: internal transcribed spacer (ITS) sequences residing within the arrays of two subgenomes out of three got homogenized toward one major ribotype, whereas the third subgenome contained a minor proportion of distinct unhomogenized copies. Homogenization mechanisms such as unequal crossover and/or gene conversion were coupled with the loss of certain 45S rDNA loci. Unlike in the 45S family, the data suggest that neither interlocus homogenization among homeologous chromosomes nor locus loss occurred in 5S rDNA. Consistently with other Triticeae, the 5S rDNA family in intermediate wheatgrass comprised two distinct array types-the long- and short-spacer unit classes. Within the long and short units, we distinguished five and three different types, respectively, likely representing homeologous unit classes donated by putative parental species. Although the major ITS ribotype corresponds in our phylogenetic analysis to the E-genome species, the minor ribotype corresponds to Dasypyrum. 5S sequences suggested the contributions from Pseudoroegneria, Dasypyrum, and Aegilops. The contribution from Aegilops to the intermediate wheatgrass' genome is a new finding with implications in wheat improvement. We discuss rDNA evolution and potential origin of intermediate wheatgrass.

  8. Circadian Patterns in Twitter

    NARCIS (Netherlands)

    ten Thij, M.C.; Kampstra, P.; Bhulai, S.; Laux, F.; Pardalos, P.M.; Crolotte, A.

    2014-01-01

    In this paper, we study activity on the microblogging platform Twitter. We analyse two separate aspects of activity on Twitter. First, we analyse the daily and weekly number of posts, through which we find clear circadian (daily) patterns emerging in the use of Twitter for multiple languages. We see

  9. Diagnostic aspects of gonorrhoea

    NARCIS (Netherlands)

    E. Stolz (Ernst)

    1974-01-01

    textabstractIn 1971 an investigation into the epidemiological, clinical, bacteriological and therapeutic aspects of gonorrhoea was started in collaboration with the Bacteriological Laboratory of the University Hospital/Medical Faculty Rotterdam. Jn the framework of this investigation, the data were

  10. [Psychosocial aspects of halitosis

    NARCIS (Netherlands)

    Jongh, A. de; Baat, C. de; Horstman, M.

    2012-01-01

    Using a representative sample from the Dutch population, some psychosocial aspects of halitosis were examined. The results of the survey showed that almost 90% of the Dutch population aged 16 years and older were regularly faced with halitosis. Forty percent reported to be exposed to someone with

  11. Sociological Aspects of Deafness.

    Science.gov (United States)

    World Federation of the Deaf, Rome (Italy).

    Nine conference papers treat the sociological aspects of deafness. Included are "Individuals Being Deaf and Blind and Living with a Well Hearing Society" by A. Marx (German Federal Republic), "A Deaf Man's Experiences in a Hearing World" by A. B. Simon(U.S.A.), "Problem of Text Books and School Appliances for Vocational…

  12. Theoretical Aspects of Translation.

    Science.gov (United States)

    House, Juliane M.

    This study attempts to bring some clarification into the concept of translation, especially into the theoretical problems presented by the difficulties of translation. The following aspects of the question are treated: (1) translation in the past and present, including the controversy over translation as an art or a science, the relevance of…

  13. Adding Trace Matching with Free Variables to AspectJ

    DEFF Research Database (Denmark)

    Allan, Chris; Avgustinov, Pavel; Christensen, Aske Simon

    2005-01-01

    by specifying a regular pattern of events in a computation trace. We have fully designed and implemented tracematches as a seamless extension of AspectJ. A key innovation in our tracematch approach is the introduction of free variables in the matching patterns. This enhancement enables a whole new class...... language design, and we derive an implementation from that semantics. The implementation has been realised as an extension of the abc compiler for AspectJ....

  14. Pattern-formation under acoustic driving forces

    Science.gov (United States)

    Valverde, Jose Manuel

    2015-07-01

    Chemical and metallurgical processes enhanced by high intensity acoustic waves, thermoacoustic engines and refrigerators, fuel rods in nuclear reactors, heat exchanger tubes, offshore and vibrating structures, solar thermal collectors, acoustic levitators, microfluidic devices, cycling, musical acoustics, blood flow through veins/arteries, hearing in the mammalian ear, carbon nanotube loudspeakers, etc. The evolution of a myriad of processes involving the oscillation of viscous fluids in the presence of solid boundaries is up to a certain extent influenced by acoustic streaming. In addition to the sound field, viscous energy dissipation at the fluid-solid boundary causes a time-independent fluid circulation, which can lead to a significant enhancement of heat, mass and momentum transfer at large oscillation amplitudes. A particularly relevant phenomenon that can be notably affected by acoustic streaming is the promotion of sound waves by temperature gradients or viceversa (thermoacoustics), which is at the basis of potentially efficient and environmental friendly engines and refrigerators that have attracted a renewed interest in the last years. In the present manuscript, historical developments and the underlying basic physics behind acoustic streaming and thermoacoustics are reviewed from an unifying perspective.

  15. Patterns of Vocalization and Impression Formation

    Science.gov (United States)

    Hayes, Donald P.; Bouma, Gary D.

    1975-01-01

    This article discusses the interactive behavior that accompanies verbal exchange. It specifically describes a set of experiments designed to isolate an important subset of interactive behavior, the vocal (as opposed to the verbal) and to relate this information to a wide range of social impressions resulting from verbal exchange. (Available from…

  16. Separation and pattern formation in hydraulic jumps

    DEFF Research Database (Denmark)

    Bohr, Tomas; Ellegaard, C.; Hansen, A. Espe

    1998-01-01

    We present theory and experiments on the circular hydraulic jump in the stationary regime. The theory can handle the situation in which the fluid flows over an edge far away from the jump. In the experiments the external height is controlled, and a series of transitions in the flow structure appe...

  17. Computational modelling of pattern formation by myxobacteria

    NARCIS (Netherlands)

    Janulevicius, A.

    2014-01-01

    Myxobacteria are social bacteria that are remarkable for their complex life cycle. In vegetative state, when nutrients are available, myxobacteria cooperatively swarm on a solid surface and feed. When exposed to starvation conditions, myxobacteria exhibit multicellular morphogenesis: 10^5-10^6 cells

  18. Role of bolA and rpoS genes in biofilm formation and adherence pattern by Escherichia coli K-12 MG1655 on polypropylene, stainless steel, and silicone surfaces.

    Science.gov (United States)

    Adnan, Mohd; Sousa, Ana Margarida; Machado, Idalina; Pereira, Maria Olivia; Khan, Saif; Morton, Glyn; Hadi, Sibte

    2017-06-01

    Escherichia coli has developed sophisticated means to sense, respond, and adapt in stressed environment. It has served as a model organism for studies in molecular genetics and physiology since the 1960s. Stress response genes are induced whenever a cell needs to adapt and survive under unfavorable growth conditions. Two of the possible important genes are rpoS and bolA. The rpoS gene has been known as the alternative sigma (σ) factor, which controls the expression of a large number of genes, which are involved in responses to various stress factors as well as transition to stationary phase from exponential form of growth. Morphogene bolA response to stressed environment leads to round morphology of E. coli cells, but little is known about its involvement in biofilms and its development or maintenance. This study has been undertaken to address the adherence pattern and formation of biofilms by E. coli on stainless steel, polypropylene, and silicone surfaces after 24 h of growth at 37 °C. Scanning electron microscopy was used for direct examination of the cell attachment and biofilm formation on various surfaces and it was found that, in the presence of bolA, E. coli cells were able to attach to the stainless steel and silicone very well. By contrast, polypropylene surface was not found to be attractive for E. coli cells. This indicates that bolA responded and can play a major role in the presence and absence of rpoS in cell attachment.

  19. Nutritional aspect of nephrolithiasis

    Directory of Open Access Journals (Sweden)

    Anita Saxena

    2010-01-01

    Full Text Available Nephrolithiasis is associated with a variety of abnormalities in urinary composition. These abnormal urinary risk factors are due to dietary indiscretions, physiological-metabolic disturbances or both. Stone disease is morbid and costly, and the recurrence rates may be as high as 30-50% after 5 years. Efforts to prevent stone formation are, therefore, essential. Dietary factors play an important role in kidney stone formation. Tailored dietary recommendations based on metabolic evaluation should be offered to patients for the prevention of recurrence of stone formation. Dietary intervention and subsequent evaluations of therapeutic efficacy should be based on results from multiple 24-h urine collections. Urine flow of >1 ml/kg/h almost eliminates the risk of supersaturation for calcium oxalate, calcium phosphate and uric acid, thus protecting from the formation of corresponding kidney stones. In patients with cystenuria, the required urine flow may even be higher and, in cases such as primary xanthinuria, high fluid intake is required. Milk intake in these patients should be within the RDA of calcium and protein. In children, recommendation of a high fluid intake has only limited success. Nevertheless, each patient should be advised about adequate fluid intake to increase urine volume in accordance with body size. Although children with hypocitraturia may benefit from therapeutic agents that raise the urine citrate concentration, all children bearing residual fragments should be counseled on adequate fluid intake along with potassium citrate treatment to prevent stone regrowth or formation.

  20. Nutritional aspect of nephrolithiasis

    Science.gov (United States)

    Saxena, Anita; Sharma, R. K.

    2010-01-01

    Nephrolithiasis is associated with a variety of abnormalities in urinary composition. These abnormal urinary risk factors are due to dietary indiscretions, physiological-metabolic disturbances or both. Stone disease is morbid and costly, and the recurrence rates may be as high as 30-50% after 5 years. Efforts to prevent stone formation are, therefore, essential. Dietary factors play an important role in kidney stone formation. Tailored dietary recommendations based on metabolic evaluation should be offered to patients for the prevention of recurrence of stone formation. Dietary intervention and subsequent evaluations of therapeutic efficacy should be based on results from multiple 24-h urine collections. Urine flow of >1 ml/kg/h almost eliminates the risk of supersaturation for calcium oxalate, calcium phosphate and uric acid, thus protecting from the formation of corresponding kidney stones. In patients with cystenuria, the required urine flow may even be higher and, in cases such as primary xanthinuria, high fluid intake is required. Milk intake in these patients should be within the RDA of calcium and protein. In children, recommendation of a high fluid intake has only limited success. Nevertheless, each patient should be advised about adequate fluid intake to increase urine volume in accordance with body size. Although children with hypocitraturia may benefit from therapeutic agents that raise the urine citrate concentration, all children bearing residual fragments should be counseled on adequate fluid intake along with potassium citrate treatment to prevent stone regrowth or formation. PMID:21369385