WorldWideScience

Sample records for artificial soil microcosms

  1. Artificial soil microcosms: a tool for studying microbial autecology under controlled conditions.

    Science.gov (United States)

    Ellis, Richard J

    2004-02-01

    A novel artificial microcosm containing all the essential chemical components of soil, but with reduced heterogeneity and biological complexity, has been developed. Its utility for supporting realistic microbial populations was demonstrated and an example of how competing bacteria can be studied is illustrated.

  2. Disturbance promotes non-indigenous bacterial invasion in soil microcosms

    DEFF Research Database (Denmark)

    Liu, Manqiang; Strandmark, Lisa Bjørnlund; Rønn, Regin

    2012-01-01

    Invasion-biology is largely based on non-experimental observation of larger organisms. Here, we apply an experimental approach to the subject. By using microbial-based microcosm-experiments, invasion-biology can be placed on firmer experimental, and hence, less anecdotal ground. A better...... understanding of the mechanisms that govern invasion-success of bacteria in soil communities will provide knowledge on the factors that hinder successful establishment of bacteria artificially inoculated into soil, e.g. for remediation purposes. Further, it will yield valuable information on general principles...... of invasion biology in other domains of life....

  3. Assessing soil ecotoxicity of methyl tert-butyl ether using earthworm bioassay; closed soil microcosm test for volatile organic compounds

    International Nuclear Information System (INIS)

    An, Youn-Joo

    2005-01-01

    An earthworm bioassay was conducted to assess ecotoxicity in methyl tert-butyl ether (MTBE)-amended soils. Ecotoxicity of MTBE to earthworms was evaluated by a paper contact method, natural field soil test, and an OECD artificial soil test. All tests were conducted in closed systems to prevent volatilization of MTBE out of test units. Test earthworm species were Perionyx excavatus and Eisenia andrei. Mortality and abnormal morphology of earthworms exposed to different concentrations of MTBE were examined. MTBE was toxic to both earthworm species and the severity of response increased with increasing MTBE concentrations. Perionyx excavatus was more sensitive to MTBE than Eisenia andrei in filter papers and two different types of soils. MTBE toxicity was more severe in OECD artificial soils than in field soils, possibly due to the burrowing behavior of earthworms into artificial soils. The present study demonstrated that ecotoxicity of volatile organic compounds such as MTBE can be assessed using an earthworm bioassay in closed soil microcosm with short-term exposure duration. - Earthworm bioassay can be a good protocol to assess soil ecotoxicity of volatile organic compounds such as MTBE

  4. Inhibition of bacterial ammonia oxidation by organohydrazines in soil microcosms

    Directory of Open Access Journals (Sweden)

    Yucheng eWu

    2012-01-01

    Full Text Available Hydroxylamine oxidation by hydroxylamine oxidoreductase (HAO is a key step for energy-yielding in support of the growth of ammonia-oxidizing bacteria (AOB. Organohydrazines have been shown to inactivate HAO from Nitrosomonas europaea, and may serve as selective inhibitors to differentiate bacterial from archaeal ammonia oxidation due to the absence of bacterial HAO gene homologue in known ammonia-oxidizing archaea (AOA. In this study, the effects of three organohydrazines on activity, abundance and composition of AOB and AOA were evaluated in soil microcosms. The results indicate that phenylhydrazine and methylhydrazine at the concentration of 100 mol per gram dry weight soil completely suppressed the activity of soil nitrification. DGGE fingerprinting and sequencing analysis of bacterial ammonia monooxygenase subunit A gene (amoA clearly demonstrated that nitrification activity change is well paralleled with the growth of Nitrosomonas europaea-like AOB in soil microcosms. No significant correlation between AOA community structure and nitrification activity was observed among all treatments during the incubation period, although incomplete inhibition of nitrification activity occurred in 2-hydroxyethylhydrazine-amended soil microcosms. These findings show that the HAO-targeted organohydrazines can effectively inhibit bacterial nitrification in soil, and the mechanism of organohydrazine affecting AOA remains unclear.

  5. Microbial community analysis of switchgrass planted and unplanted soil microcosms displaying PCB dechlorination.

    Science.gov (United States)

    Liang, Yi; Meggo, Richard; Hu, Dingfei; Schnoor, Jerald L; Mattes, Timothy E

    2015-08-01

    Polychlorinated biphenyls (PCBs) pose potential risks to human and environmental health because they are carcinogenic, persistent, and bioaccumulative. In this study, we investigated bacterial communities in soil microcosms spiked with PCB 52, 77, and 153. Switchgrass (Panicum virgatum) was employed to improve overall PCB removal, and redox cycling (i.e., sequential periods of flooding followed by periods of no flooding) was performed in an effort to promote PCB dechlorination. Lesser chlorinated PCB transformation products were detected in all microcosms, indicating the occurrence of PCB dechlorination. Terminal restriction fragment length polymorphism (T-RFLP) and clone library analysis showed that PCB spiking, switchgrass planting, and redox cycling affected the microbial community structure. Putative organohalide-respiring Chloroflexi populations, which were not found in unflooded microcosms, were enriched after 2 weeks of flooding in the redox-cycled microcosms. Sequences classified as Geobacter sp. were detected in all microcosms and were most abundant in the switchgrass-planted microcosm spiked with PCB congeners. The presence of possible organohalide-respiring bacteria in these soil microcosms suggests that they play a role in PCB dechlorination therein.

  6. Tetracyclines and tetracycline resistance in agricultural soils: microcosm and field studies.

    OpenAIRE

    Schmitt, Heike; Stoob, Krispin; Hamscher, Gerd; Smit, Eric; Seinen, Willem

    2006-01-01

    The influence of the use of antibiotics on the prevalence of resistance genes in the environment is still poorly understood. We studied the diversity of tetracycline and sulfonamide resistance genes as influenced by fertilization with pig manure in soil microcosms and at two field locations. Manure contained a high diversity of resistance genes, regardless of whether it stemmed from a farm operation with low or regular use of antibiotics. In the microcosm soils, the influence of fertilization...

  7. Chromium Resistant Bacteria: Impact on Plant Growth in Soil Microcosm

    Directory of Open Access Journals (Sweden)

    Sayel Hanane

    2014-07-01

    Full Text Available Three chromium resistant bacterial strains, Pseudomonas fluorescens PF28, Enterobacter amnigenus EA31 and Enterococcus gallinarum S34 isolated from tannery waste contaminated soil were used in this study. All strains could resist a high concentration of K2Cr2O7 that is up to 300 mg/L. The effect of these strains on clover plants (Trifolium campestre in the presence of two chromium salts CrCl3 and K2Cr2O7 was studied in soil microcosm. Application of chromium salts adversely affected seed germination, root and shoot length. Bacterial inoculation improved the growth parameters under chromate stress when compared with non inoculated respective controls. There was observed more than 50% reduction of Cr(VI in inoculated soil microcosms, as compared to the uninoculated soil under the same conditions. The results obtained in this study are significant for the bioremediation of chromate pollution.

  8. Persistence of selected ammonium- and phosphonium-based ionic liquids in urban park soil microcosms

    DEFF Research Database (Denmark)

    Sydow, Mateusz; Szczepaniak, Zuzanna; Framski, Grzegorz

    2015-01-01

    Knowledge about biodegradability of ionic liquids (ILs) in terrestrial systems is limited. Here, using urban park soil microcosms spiked with either ammonium- or phosphonium-based ILs [didecyldimethylammonium 3-amino-1,2,4-triazolate, benzalkonium 3-amino-1,2,4-triazolate, trihexyl(tetradecyl)pho......Knowledge about biodegradability of ionic liquids (ILs) in terrestrial systems is limited. Here, using urban park soil microcosms spiked with either ammonium- or phosphonium-based ILs [didecyldimethylammonium 3-amino-1,2,4-triazolate, benzalkonium 3-amino-1,2,4-triazolate, trihexyl......(tetradecyl)phosphonium chloride, or trihexyl(tetradecyl)phosphonium 1,2,4-triazolate], we studied their (i) 300-day primary biodegradation, and (ii) influence on CO2 evolution from the microcosms. The primary biodegradation ranged from 21 to 33% of total compound in the dissolved phase. The evolution of CO2 from spiked...... microcosms was either lower or within the range of background soil respiration, indicating no or small mineralization of the parent compounds and/or their metabolites, and their negligible or small toxicity to soil microorganisms. Our results suggest the potential for persistence of the four studied ILs...

  9. Effects of Cover Crops on the Movement and Fate of Soil-Applied 14C-Fonofos in a Soil-Plant-Water Microcosm

    International Nuclear Information System (INIS)

    Liang, T.T.; Lichtenstein, E.P.

    1981-01-01

    Full text: The effects of corn plants or a ''lawn'' of ryegrass on the movement and metabolism of soil-applied 14 C-(ring)-fonofos were studied in a microcosm which consisted of terrestrial and aquatic components. Artificial rain, applied to the fallow or plant covered soils, resulted in runoff that accumulated in aquaria containing lake bottom mud and aquatic organisms. The presence and the type of a cover crop had a considerable effect on the mobility and metabolism of soil—applied 14 C—fonofos. The insecticide plus its metabolites were least persistent in systems with fallow soils and most persistent in those with ryegrass. Within the terrestrial soil 14 C-compounds moved downwards and were also translocated via the root systems into the leaves of corn and ryegrass. Within the plant tops 86% of the recovered benzene—soluble 14 C-compounds were in the form of the detoxified methyl phenyl sulfone and 2% or less as fonofos. Rain caused a considerable runoff of fallow soil but much less of cropped soil into the aquaria. 14 C-compounds transported were primarily associated with the runoff soil and most of these were later found in the soil—lake mud sediments. 14 C—fonofos was the major constituent in soils and aquatic sediments while the major metabolite recovered from both the terrestrial and aquatic portion of the microcosm was methyl phenyl sulfone, its amounts ranging from 13% to 92% of all benzene—soluble radiocarbon. Relatively small amounts of the insecticidal oxygen analog of fonofos were recovered, the exception being in roots of corn and of ryegrass. (author)

  10. Chlordecone fate and mineralisation in a tropical soil (andosol) microcosm under aerobic conditions

    Energy Technology Data Exchange (ETDEWEB)

    Fernández-Bayo, Jesus D., E-mail: fernanje@supagro.inra.fr [IRD, UMR LISAH Bât 24, 2 Place Viala, 34060 Montpellier cedex 1 (France); INRA, UMR LISAH Bât 24, 2 Place Viala, 34060 Montpellier cedex 1 (France); Saison, Carine [IRD, UMR LISAH Bât 24, 2 Place Viala, 34060 Montpellier cedex 1 (France); Voltz, Marc [INRA, UMR LISAH Bât 24, 2 Place Viala, 34060 Montpellier cedex 1 (France); Disko, Ulrich; Hofmann, Diana; Berns, Anne E. [Forschungszentrum Jülich GmbH, IBG 3, 52425 Jülich (Germany)

    2013-10-01

    Chlordecone is a persistent organochlorine insecticide that, even decades after its ban, poses a threat to the environment and human health. Nevertheless, its environmental fate in soils has scarcely been investigated, and elementary data on its degradation and behaviour in soil are lacking. The mineralisation and sorption of chlordecone and the formation of possible metabolites were evaluated in a tropical agricultural andosol. Soil microcosms with two different soil horizons (S-A and S-B) were incubated for 215 days with {sup 14}C-chlordecone. At five different times (1, 33, 88, 150 and 215 days) the extractability of {sup 14}C-chlordecone was analysed. Mineralisation was monitored using {sup 14}CO{sub 2} traps of NaOH. The appearance of metabolites was studied using thin layer and gas chromatography techniques. At the end of the experiment, the water soluble {sup 14}C-activity was 2% of the remaining {sup 14}C-chlordecone for S-A and 8% for S-B. Only 12% of the remaining activity was non extractable and more than 80% remained extractable with organic solvents. For the first time to our knowledge, a significant mineralisation of chlordecone was measured in a microcosm under aerobic conditions (4.9% for S-A and 3.2% for S-B of the initial {sup 14}C-activity). The drastically lower emission of {sup 14}CO{sub 2} in sterilised microcosms indicated the biological origin of chlordecone mineralisation in the non-sterilised microcosms. No metabolites could be detected in the soil extracts. The mineralisation rate of chlordecone decreased by one order of magnitude throughout the incubation period. Thus, the chlordecone content in the soil remained large. This study confirms the existence of chlordecone degrading organisms in a tropical andosol. The reasons why their activity is restricted should be elucidated to allow the development of bioremediation approaches. Possible reasons are a heterogeneous distribution a chlordecone between sub-compartments with different

  11. Chlordecone fate and mineralisation in a tropical soil (andosol) microcosm under aerobic conditions

    International Nuclear Information System (INIS)

    Fernández-Bayo, Jesus D.; Saison, Carine; Voltz, Marc; Disko, Ulrich; Hofmann, Diana; Berns, Anne E.

    2013-01-01

    Chlordecone is a persistent organochlorine insecticide that, even decades after its ban, poses a threat to the environment and human health. Nevertheless, its environmental fate in soils has scarcely been investigated, and elementary data on its degradation and behaviour in soil are lacking. The mineralisation and sorption of chlordecone and the formation of possible metabolites were evaluated in a tropical agricultural andosol. Soil microcosms with two different soil horizons (S-A and S-B) were incubated for 215 days with 14 C-chlordecone. At five different times (1, 33, 88, 150 and 215 days) the extractability of 14 C-chlordecone was analysed. Mineralisation was monitored using 14 CO 2 traps of NaOH. The appearance of metabolites was studied using thin layer and gas chromatography techniques. At the end of the experiment, the water soluble 14 C-activity was 2% of the remaining 14 C-chlordecone for S-A and 8% for S-B. Only 12% of the remaining activity was non extractable and more than 80% remained extractable with organic solvents. For the first time to our knowledge, a significant mineralisation of chlordecone was measured in a microcosm under aerobic conditions (4.9% for S-A and 3.2% for S-B of the initial 14 C-activity). The drastically lower emission of 14 CO 2 in sterilised microcosms indicated the biological origin of chlordecone mineralisation in the non-sterilised microcosms. No metabolites could be detected in the soil extracts. The mineralisation rate of chlordecone decreased by one order of magnitude throughout the incubation period. Thus, the chlordecone content in the soil remained large. This study confirms the existence of chlordecone degrading organisms in a tropical andosol. The reasons why their activity is restricted should be elucidated to allow the development of bioremediation approaches. Possible reasons are a heterogeneous distribution a chlordecone between sub-compartments with different microbial activities or a degradation of

  12. Mercury decreases culturability of Pseudomonas frederiksbergensis JAJ 28 in soil microcosms

    DEFF Research Database (Denmark)

    Johnsen, Kaare; Ekelund, Flemming; Binnerup, Svend J.

    2003-01-01

    Mercury is a biologically potent heavy metal, which has been found to change the diversity of culturable bacteria. Therefore, we investigated whether Hg kills bacteria in soil or reduces culturability. Soil microcosms were inoculated with Pseudomonas frederiksbergensis JAJ 28 and were sampled...... into account when studying the effects of heavy metals on bacterial diversity....

  13. Monitoring Arthrobacter protophormiae RKJ100 in a 'tag and chase' method during p-nitrophenol bio-remediation in soil microcosms.

    Science.gov (United States)

    Pandey, Gunjan; Pandey, Janmejay; Jain, Rakesh K

    2006-05-01

    Monitoring of micro-organisms released deliberately into the environment is essential to assess their movement during the bio-remediation process. During the last few years, DNA-based genetic methods have emerged as the preferred method for such monitoring; however, their use is restricted in cases where organisms used for bio-remediation are not well characterized or where the public domain databases do not provide sufficient information regarding their sequence. For monitoring of such micro-organisms, alternate approaches have to be undertaken. In this study, we have specifically monitored a p-nitrophenol (PNP)-degrading organism, Arthrobacter protophormiae RKJ100, using molecular methods during PNP degradation in soil microcosm. Cells were tagged with a transposon-based foreign DNA sequence prior to their introduction into PNP-contaminated microcosms. Later, this artificially introduced DNA sequence was PCR-amplified to distinguish the bio-augmented organism from the indigenous microflora during PNP bio-remediation.

  14. Quantitative survival of Leptospira interrogans in soil and water microcosms.

    Science.gov (United States)

    Casanovas-Massana, Arnau; Pedra, Gabriel Ghizzi; Wunder, Elsio A; Diggle, Peter J; Begon, Mike; Ko, Albert I

    2018-04-27

    Leptospira interrogans is the etiological agent of leptospirosis, a globally distributed zoonotic disease. Human infection usually occurs through skin exposure with water and soil contaminated with the urine of chronically infected animals. In this study, we aimed to quantitatively characterize the survival of Leptospira interrogans serovar Copenhageni in environmental matrices. We constructed laboratory microcosms to simulate natural conditions and determined the persistence of DNA markers in soil, mud, spring water and sewage using a qPCR and a PMA-qPCR assay. We found that L. interrogans does not survive at high concentrations in the tested matrices. No net growth was detected in any of the experimental conditions and in all cases the concentration of the DNA markers targeted decreased from the beginning of the experiment following an exponential decay with a decreasing decay rate over time. After 12 and 21 days of incubation the spiked concentration of 10 6 L. interrogans cells/mL or g decreased to approximately 100 cells/mL or g in soil and spring water microcosms, respectively. Furthermore, culturable L. interrogans persisted at concentrations under the limit of detection by PMA-qPCR or qPCR for at least 16 days in soil and 28 days in spring water. Altogether our findings suggest that the environment is not a multiplication reservoir, but a temporary carrier of the L. interrogans Copenhageni, although the observed prolonged persistence at low concentrations may still enable the transmission of the disease. IMPORTANCE Leptospirosis is a zoonotic disease caused by spirochetes of the genus Leptospira that primarily affects impoverished populations worldwide. Although leptospirosis is transmitted by contact with water and soil, little is known about the ability of the pathogen to survive in the environment. In this study, we quantitatively characterized the survival of L. interrogans in environmental microcosms and found that although it cannot multiply in water

  15. The influence of nickel on the bioremediation of multi-component contaminated tropical soil: microcosm and batch bioreactor studies.

    Science.gov (United States)

    Taketani, Natália Franco; Taketani, Rodrigo Gouvêa; Leite, Selma Gomes Ferreira; Rizzo, Andrea Camardella de Lima; Tsai, Siu Mui; da Cunha, Cláudia Duarte

    2015-07-01

    Large petrochemical discharges are responsible for organic and inorganic pollutants in the environment. The purpose of this study was to evaluate the influence of nickel, one of the most abundant inorganic element in crude oil and the main component of hydrogen catalysts for oil refining, on the microbial community structure in artificially petroleum-contaminated microcosms and in solid phase bioreactor studies. In the presence of metals, the oil biodegradation in microcosms was significantly delayed during the first 7 days of operation. Also, increasing amounts of moisture generated a positive influence on the biodegradation processes. The oil concentration, exhibiting the most negative influence at the end of the treatment period. Molecular fingerprinting analyses (denaturing gradient gel electrophoresis--DGGE) indicated that the inclusion of nickel into the contaminated soil promoted direct changes to the microbial community structure. By the end of the experiments, the results of the total petroleum hydrocarbons removal in the bioreactor and the microcosm were similar, but reductions in the treatment times were observed with the bioreactor experiments. An analysis of the microbial community structure by DGGE using various markers showed distinct behaviors between two treatments containing high nickel concentrations. The main conclusion of this study was that Nickel promotes a significant delay in oil biodegradation, despite having only a minor effect over the microbial community.

  16. Tetracyclines and tetracycline resistance in agricultural soils: microcosm and field studies.

    NARCIS (Netherlands)

    Schmitt, Heike; Stoob, Krispin; Hamscher, Gerd; Smit, Eric; Seinen, Willem

    2006-01-01

    The influence of the use of antibiotics on the prevalence of resistance genes in the environment is still poorly understood. We studied the diversity of tetracycline and sulfonamide resistance genes as influenced by fertilization with pig manure in soil microcosms and at two field locations. Manure

  17. The effects of high-tannin leaf litter from transgenic poplars on microbial communities in microcosm soils.

    Directory of Open Access Journals (Sweden)

    Richard S. Winder

    2013-09-01

    Full Text Available The impacts of leaf litter from genetically-modified hybrid poplar accumulating high levels of condensed tannins (proanthocyanidins were examined in soil microcosms consisting of moss growing on sieved soil. Moss preferentially proliferated in microcosms with lower tannin content; DGGE detected increased fungal diversity in microcosms with low-tannin litter. The proportion of cloned rDNA sequences from Actinobacteria decreased with litter addition while Bacteroidetes, Chloroflexi, Cyanobacteria, and α-Proteobacteria significantly increased. β–Proteobacteria were proportionally more numerous at high tannin levels. Tannins had no significant impact on overall diversity of bacterial communities analyzed with various estimators. There was an increased proportion of N-fixing bacteria corresponding to the addition of litter with low tannin levels. The addition of litter increased the proportion of Ascomycota/Basidiomycota. Dothideomycetes, Pucciniomycetes, and Tremellomycetes also increased and Agaricomycetes decreased. Agaricomycetes and Sordariomycetes were significantly more abundant in controls, whereas Pucciniomycetes increased in soil with litter from transformed trees (P = 0.051. Richness estimators and diversity indices revealed no significant difference in the composition of fungal communities; PCoA partitioned the fungal communities into three groups: (i those with higher amounts of added tannin from both transformed and untransformed treatments, (ii those corresponding to soils without litter, and (iii those corresponding to microcosms with litter added from trees transformed only with a β-glucuronidase (GUS control vector. While the litter from transformed poplars had significant effects on soil microbe communities, the observed impacts reflected known impacts on soil processes associated with tannins, and were similar to changes that would be expected from natural variation in tannin levels.

  18. The effects of high-tannin leaf litter from transgenic poplars on microbial communities in microcosm soils.

    Science.gov (United States)

    Winder, Richard S; Lamarche, Josyanne; Constabel, C Peter; Hamelin, Richard C

    2013-01-01

    The impacts of leaf litter from genetically modified hybrid poplar accumulating high levels of condensed tannins (proanthocyanidins) were examined in soil microcosms consisting of moss growing on sieved soil. Moss preferentially proliferated in microcosms with lower tannin content; DGGE (denaturing gradient gel electrophoresis) detected increased fungal diversity in microcosms with low-tannin litter. The proportion of cloned rDNA sequences from Actinobacteria decreased with litter addition while Bacteroidetes, Chloroflexi, Cyanobacteria, and α-Proteobacteria significantly increased. β-Proteobacteria were proportionally more numerous at high-tannin levels. Tannins had no significant impact on overall diversity of bacterial communities analyzed with various estimators. There was an increased proportion of N-fixing bacteria corresponding to the addition of litter with low-tannin levels. The addition of litter increased the proportion of Ascomycota/Basidiomycota. Dothideomycetes, Pucciniomycetes, and Tremellomycetes also increased and Agaricomycetes decreased. Agaricomycetes and Sordariomycetes were significantly more abundant in controls, whereas Pucciniomycetes increased in soil with litter from transformed trees (P = 0.051). Richness estimators and diversity indices revealed no significant difference in the composition of fungal communities; PCoA (principal coordinate analyses) partitioned the fungal communities into three groups: (i) those with higher amounts of added tannin from both transformed and untransformed treatments, (ii) those corresponding to soils without litter, and (iii) those corresponding to microcosms with litter added from trees transformed only with a β-glucuronidase control vector. While the litter from transformed poplars had significant effects on soil microbe communities, the observed impacts reflected known impacts on soil processes associated with tannins, and were similar to changes that would be expected from natural variation in

  19. Microbial degradation of street dust polycyclic aromatic hydrocarbons in microcosms simulating diffuse pollution of urban soil

    DEFF Research Database (Denmark)

    Johnsen, Anders R; de Lipthay, Julia R; Sørensen, Søren J

    2006-01-01

    Diffuse pollution with polycyclic aromatic hydrocarbons (PAHs) of topsoil in urban regions has caused increasing concerns in recent years. We simulated diffuse pollution of soil in microcosms by spiking sandy topsoil (A-horizon) and coarse, mineral subsoil (C-horizon) with street dust (PM63...... for the persistence and low bioaccessibility of 5- and 6-ring PAHs in diffusely polluted soil.......) isolated from municipal street sweepings from central Copenhagen. The microbial communities adapted to PAH degradation in microcosms spiked with street dust in both A-horizon and C-horizon soils, in spite of low PAH-concentrations. The increased potential for PAH degradation was demonstrated on several...

  20. The effects of H2SO4 and (NH42SO4 treatments on the chemistry of soil drainage water and pine seedlings in forest soil microcosms

    Directory of Open Access Journals (Sweden)

    M. I. Stutter

    2004-01-01

    Full Text Available An experiment comparing effects of sulphuric acid and reduced N deposition on soil water quality and on chemical and physical growth indicators for forest ecosystems is described. Six H2SO4 and (NH42SO4 treatment loads, from 0 – 44 and 0 – 25 kmolc ha-1 yr-1, respectively, were applied to outdoor microcosms of Pinus sylvestris seedlings in 3 acid to intermediate upland soils (calc-silicate, quartzite and granite for 2 years. Different soil types responded similarly to H2SO4 loads, resulting in decreased leachate pH, but differently to reduced N inputs. In microcosms of calc-silicate soil, nitrification of NH4 resulted in lower pH and higher cation leaching than in acid treatments. By contrast, in quartzite and granite soils, (NH42SO4 promoted direct cation leaching, although leachate pH increased. The results highlighted the importance of soil composition on the nature of the cations leached, the SO4 adsorption capacities and microbial N transformations. Greater seedling growth on calc-silicate soils under both treatment types was related to sustained nutrient availability. Reductions in foliar P and Mg with higher N treatments were observed for seedlings in the calc-silicate soil. There were few treatment effects on quartzite and granite microcosm tree seedlings since P limitation precluded seedling growth responses to treatments. Hence, any benefits of N deposition to seedlings on quartzite and granite soils appeared limited by availability of co-nutrients, exacerbated by rapid depletion of soil exchangeable base cations. Keywords: acidification, manipulation, nitrogen, ammonium, deposition, soil, drainage, pine, microcosms, forest

  1. A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil

    DEFF Research Database (Denmark)

    Ghodsalavi, Behnoushsadat; Svenningsen, Nanna Bygvraa; Hao, Xiuli

    2017-01-01

    It is important to identify and recover bacteria associating with fungi under natural soil conditions to enable eco-physiological studies, and to facilitate the use of bacterial-fungal consortia in environmental biotechnology. We have developed a novel type of baiting microcosm, where fungal hyphae...... interact with bacteria under close-to-natural soil conditions; an advantage compared to model systems that determine fungal influences on bacterial communities in laboratory media. In the current approach, the hyphae are placed on a solid support, which enables the recovery of hyphae with associated...... bacteria in contrast to model systems that compare bulk soil and mycosphere soil. We used the baiting microcosm approach to determine, for the first time, the composition of the bacterial community associating in the soil with hyphae of the phosphate-solubilizer, Penicillium bilaii. By applying...

  2. Dissipation of 2,4-D in soils of the Humid Pampa region, Argentina: a microcosm study.

    Science.gov (United States)

    Merini, Luciano J; Cuadrado, Virginia; Flocco, Cecilia G; Giulietti, Ana M

    2007-06-01

    Phenoxy herbicides like 2,4-dichlorophenoxyacetic acid (2,4-D) are widely used in agricultural practices. Although its half life in soil is 7-14d, the herbicide itself and its first metabolite 2,4-dichlorophenol (2,4-DCP) could remain in the soil for longer periods, as a consequence of its intensive use. Microcosms assays were conducted to study the influence of indigenous microflora and plants (alfalfa) on the dissipation of 2,4-D from soils of the Humid Pampa region, Argentina, with previous history of phenoxy herbicides application. Results showed that 2,4-D was rapidly degraded, and the permanence of 2,4-DCP in soil depended on the presence of plants and soil microorganisms. Regarding soil microbial community, the presence of 2,4-D degrading bacteria was detected even in basal conditions in this soil, possibly due to the adaptation of the microflora to the herbicide. There was an increment of two orders of magnitude in herbicide degraders after 15d from 2,4-D addition, both in planted and unplanted microcosms. Total heterotrophic bacteria numbers were about 1x10(8) CFUg(-1) dry soil and no significant differences were found between different treatments. Overall, the information provided by this work indicates that the soil under study has an important intrinsic degradation capacity, given by a microbial community adapted to the presence of phenoxy herbicides.

  3. Aromatic hydrocarbon degradation in hydrogen peroxide- and nitrate-amended microcosms

    International Nuclear Information System (INIS)

    Christian, B.J.; Pugh, L.B.; Clarke, B.H.

    1995-01-01

    Fifty microcosms were constructed using aquifer materials from a former coal gasification site and divided into four groups: poisoned control, nutrient-free control, hydrogen peroxide-amended, and nitrate-amended microcosms. Each microcosm contained site soil and groundwater in a 1.2-L glass media bottle. When depleted, hydrogen peroxide and sodium nitrate were injected into the microcosms. Microcosms were periodically sacrificed for analysis of polycyclic aromatic hydrocarbons (PAHs); monocyclic aromatic hydrocarbons (benzene, toluene, ethylbenzene, and xylenes [BTEX]); total petroleum hydrocarbons (TPH); and heterotrophic plate counts (HPCs). BTEX and two- and three-ringed PAHs were degraded in microcosms receiving electron-acceptor additions compared to poisoned controls. Four-, five-, and six-ringed PAHs were not significantly degraded during this study. Except in poisoned controls, significant amounts of dissolved oxygen (DO) or nitrate were utilized, and microbial populations increased by 3 to 5 orders of magnitude compared to site soils used to assemble the microcosms (i.e., baseline samples)

  4. Arbuscular-mycorrhizal networks inhibit Eucalyptus tetrodonta seedlings in rain forest soil microcosms.

    Directory of Open Access Journals (Sweden)

    David P Janos

    Full Text Available Eucalyptus tetrodonta, a co-dominant tree species of tropical, northern Australian savannas, does not invade adjacent monsoon rain forest unless the forest is burnt intensely. Such facilitation by fire of seedling establishment is known as the "ashbed effect." Because the ashbed effect might involve disruption of common mycorrhizal networks, we hypothesized that in the absence of fire, intact rain forest arbuscular mycorrhizal (AM networks inhibit E. tetrodonta seedlings. Although arbuscular mycorrhizas predominate in the rain forest, common tree species of the northern Australian savannas (including adult E. tetrodonta host ectomycorrhizas. To test our hypothesis, we grew E. tetrodonta and Ceiba pentandra (an AM-responsive species used to confirm treatments separately in microcosms of ambient or methyl-bromide fumigated rain forest soil with or without severing potential mycorrhizal fungus connections to an AM nurse plant, Litsea glutinosa. As expected, C. pentandra formed mycorrhizas in all treatments but had the most root colonization and grew fastest in ambient soil. E. tetrodonta seedlings also formed AM in all treatments, but severing hyphae in fumigated soil produced the least colonization and the best growth. Three of ten E. tetrodonta seedlings in ambient soil with intact network hyphae died. Because foliar chlorosis was symptomatic of iron deficiency, after 130 days we began to fertilize half the E. tetrodonta seedlings in ambient soil with an iron solution. Iron fertilization completely remedied chlorosis and stimulated leaf growth. Our microcosm results suggest that in intact rain forest, common AM networks mediate belowground competition and AM fungi may exacerbate iron deficiency, thereby enhancing resistance to E. tetrodonta invasion. Common AM networks-previously unrecognized as contributors to the ashbed effect-probably help to maintain the rain forest-savanna boundary.

  5. Impacts of earthworm, .i.Pheretima (Amynthas) cornosa./i. on nutrient loss from soil in microcosm experiment

    Czech Academy of Sciences Publication Activity Database

    Kaneda, Satoshi; Nakajima, M.; Murakami, T.; Urashima, Y.

    2008-01-01

    Roč. 10, - (2008) ISSN 1029-7006. [EGU General Assembly 2008. 13.04.2008-18.04.2008, Vienna] Institutional research plan: CEZ:AV0Z60660521 Keywords : Pheretima (Amynthas) cornosa * nutrient loss from soil * microcosm experiment Subject RIV: EH - Ecology, Behaviour

  6. Atrazine remediation in wetland microcosms.

    Science.gov (United States)

    Runes, H B; Bottomley, P J; Lerch, R N; Jenkins, J J

    2001-05-01

    Laboratory wetland microcosms were used to study treatment of atrazine in irrigation runoff by a field-scale-constructed wetland under controlled conditions. Three experiments, in which 1 ppm atrazine was added to the water column of three wetland, one soil control, and one water control microcosm, were conducted. Atrazine dissipation from the water column and degradate formation (deethylatrazine [DEA]; deisopropylatrazine [DIA]; and hydroxyatrazine [HA]) were monitored. Atrazine dissipation from the water column of wetland microcosms was biphasic. Less than 12% of the atrazine applied to wetland microcosms remained in the water column on day 56. Atrazine degradates were observed in water and sediment, with HA the predominant degradate. Analysis of day 56 sediment samples indicated that a significant portion of the initial application was detected as the parent compound and HA. Most probable number (MPN) assays demonstrated that atrazine degrader populations were small in wetland sediment. Wetland microcosms were able to reduce atrazine concentration in the water column via sorption and degradation. Based on results from this study, it is hypothesized that plant uptake contributed to atrazine dissipation from the water column.

  7. A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil.

    Directory of Open Access Journals (Sweden)

    Behnoushsadat Ghodsalavi

    Full Text Available It is important to identify and recover bacteria associating with fungi under natural soil conditions to enable eco-physiological studies, and to facilitate the use of bacterial-fungal consortia in environmental biotechnology. We have developed a novel type of baiting microcosm, where fungal hyphae interact with bacteria under close-to-natural soil conditions; an advantage compared to model systems that determine fungal influences on bacterial communities in laboratory media. In the current approach, the hyphae are placed on a solid support, which enables the recovery of hyphae with associated bacteria in contrast to model systems that compare bulk soil and mycosphere soil. We used the baiting microcosm approach to determine, for the first time, the composition of the bacterial community associating in the soil with hyphae of the phosphate-solubilizer, Penicillium bilaii. By applying a cultivation-independent 16S rRNA gene-targeted amplicon sequencing approach, we found a hypha-associated bacterial community with low diversity compared to the bulk soil community and exhibiting massive dominance of Burkholderia OTUs. Burkholderia is known be abundant in soil environments affected by fungi, but the discovery of this massive dominance among bacteria firmly associating with hyphae in soil is novel and made possible by the current bait approach.

  8. Naturally-Derived Microcosms for Estimating Stress Effects in Aquatic Ecosystems

    Science.gov (United States)

    1991-05-31

    Respiration; RAIII: Protozoans: Lub 06 Biomonitoring; Enzyme; Ecotoxicology : Microcoasm; Artificial L aa Substrates 19. ABSTRACT (Continue on tverie...and macrophytes for 5 weeks and found that CV’s for most microcosm measures were 10 to 30% and that CV’s decreased as microcosms matured. Brockway et...212 Contract DAMD17-88-C-8068 convey ecotoxicological meaning and provide investigators with resolving power for finding differences. At the present

  9. Artificial Crab Burrows Facilitate Desalting of Rooted Mangrove Sediment in a Microcosm Study

    Directory of Open Access Journals (Sweden)

    Nathalie Pülmanns

    2015-07-01

    Full Text Available Water uptake by mangrove trees can result in salt accumulation in sediment around roots, negatively influencing growth. Tidal pumping facilitates salt release and can be enhanced by crab burrows. Similarly, flushing of burrows by incoming tidal water decreases sediment salinity. In contrast to burrows with multiple entrances, the role of burrows with one opening for salinity reduction is largely unknown. In a microcosm experiment we studied the effect of artificial, burrow-like macro-pores with one opening on the desalting of mangrove sediment and growth of Rhizophora mangle L. seedlings. Sediment salinity, seedling leaf area and seedling growth were monitored over six months. Artificial burrows facilitated salt release from the sediment after six weeks, but seedling growth was not influenced. To test whether crab burrows with one opening facilitate salt release in mangrove forests, sediment salinities were measured in areas with and without R. mangle stilt roots in North Brazil at the beginning and end of the wet season. In addition, burrows of Ucides cordatus were counted. High crab burrow densities and sediment salinities were associated with stilt root occurrence. Precipitation and salt accumulation by tree roots seem to have a larger effect on sediment salinity than desalting by U. cordatus burrows.

  10. Carbazole degradation in the soil microcosm by tropical bacterial strains

    Directory of Open Access Journals (Sweden)

    Lateef B. Salam

    2015-01-01

    Full Text Available In a previous study, three bacterial strains isolated from tropical hydrocarbon-contaminated soils and phylogenetically identified as Achromobacter sp. strain SL1, Pseudomonassp. strain SL4 and Microbacterium esteraromaticum strain SL6 displayed angular dioxygenation and mineralization of carbazole in batch cultures. In this study, the ability of these isolates to survive and enhance carbazole degradation in soil were tested in field-moist microcosms. Strain SL4 had the highest survival rate (1.8 x 107 cfu/g after 30 days of incubation in sterilized soil, while there was a decrease in population density in native (unsterilized soil when compared with the initial population. Gas chromatographic analysis after 30 days of incubation showed that in sterilized soil amended with carbazole (100 mg/kg, 66.96, 82.15 and 68.54% were degraded by strains SL1, SL4 and SL6, respectively, with rates of degradation of 0.093, 0.114 and 0.095 mg kg−1 h−1. The combination of the three isolates as inoculum in sterilized soil degraded 87.13% carbazole at a rate of 0.121 mg kg−1 h−1. In native soil amended with carbazole (100 mg/kg, 91.64, 87.29 and 89.13% were degraded by strains SL1, SL4 and SL6 after 30 days of incubation, with rates of degradation of 0.127, 0.121 and 0.124 mg kg−1h−1, respectively. This study successfully established the survivability (> 106 cfu/g detected after 30 days and carbazole-degrading ability of these bacterial strains in soil, and highlights the potential of these isolates as seed for the bioremediation of carbazole-impacted environments.

  11. Development of phenanthrene catabolism in natural and artificial soils

    International Nuclear Information System (INIS)

    Rhodes, Angela H.; Hofman, Jakub; Semple, Kirk T.

    2008-01-01

    The characteristics of natural soils often vary from those of artificial soil (e.g. OECD), which may lead to substantial differences in the bioavailability of test substances. The aim of this investigation was to characterise the development of phenanthrene catabolism in both natural and artificial soils with varying total organic carbon (TOC) content after 1, 14, 42 and 84 d soil-phenanthrene contact time. Indigenous catabolic activity was measured via the addition of 14 C-phenanthrene using the respirometric soil slurry assay. Notably, the lag phases, fastest rates and total extents of 14 C-phenanthrene degradation were relatively comparable in soils with similar TOC content after 1 d contact time. However, natural soils generally exhibited significantly shorter lag phases, faster rates and higher extents of mineralisation, than their artificial counterparts after 42 and 84 d contact time. Such findings suggest that the extrapolation of results from artificial soils to real/natural soils may not be straightforward. - Natural and artificial soils display different phenanthrene mineralisation profiles suggesting that the extrapolation of results from artificial soils to real/natural soils may not be straightforward

  12. Strong Impact on the Polycyclic Aromatic Hydrocarbon (PAH)-Degrading Community of a PAH-Polluted Soil but Marginal Effect on PAH Degradation when Priming with Bioremediated Soil Dominated by Mycobacteria

    DEFF Research Database (Denmark)

    Johnsen, Anders R.; Schmidt, Stine; Hybholdt, Trine K.

    2007-01-01

    Bioaugmentation of soil polluted with polycyclic aromatic hydrocarbons (PAHs) is often disappointing because of the low survival rate and low activity of the introduced degrader bacteria. We therefore investigated the possibility of priming PAH degradation in soil by adding 2% of bioremediated soil...... with a high capacity for PAH degradation. The culturable PAH-degrading community of the bioremediated primer soil was dominated by Mycobacterium spp. A microcosm containing pristine soil artificially polluted with PAHs and primed with bioremediated soil showed a fast, 100- to 1,000-fold increase in numbers...... of culturable phenanthrene-, pyrene-, and fluoranthene degraders and a 160-fold increase in copy numbers of the mycobacterial PAH dioxygenase gene pdo1. A nonpolluted microcosm primed with bioremediated soil showed a high rate of survival of the introduced degrader community during the 112 days of incubation...

  13. Evaluation of terrestrial microcosms for detection, fate, and survival analysis of genetically engineered microorganisms and their recombinant genetic material

    Energy Technology Data Exchange (ETDEWEB)

    Fredrickson, J.K.; Seidler, R.J.

    1989-02-01

    The research included in this document represents the current scientific information available regarding the applicability of terrestrial microcosms and related methodologies for evaluating detection methods and the fate and survival of microorganisms in the environment. The three terrestrial microcosms described in this document were used to evaluate the survival and fate of recombinant bacteria in soils and in association with plant surfaces and insects and their transport through soil with percolating water and root systems, and to test new methods and procedures to improve detection and enumeration of bacteria in soil. Simple (potting soil composed of peat mix and perlite, lacking environmental control and monitoring) and complex microcosms (agricultural soil with partial control and monitoring of environmental conditions) were demonstrated to be useful tools for preliminary assessments of microbial viability in terrestrial ecosystems. These studies evaluated the survival patterns of Enterobacter cloacae (pBR322) in soil and on plant surfaces and the ingestion of this same microorganism by cutworms and survival in the foregut and frass. The Versacore microcosm design was used to monitor the fate and competitiveness of genetically engineered bacteria in soil. Both selective media and gene probes were used successfully to follow the fate of two recombinant Pseudomonas sp. introduced into Versacore microcosms. Intact soil-core microcosms were employed to evaluate the fate and transport of genetically altered Azospirillum sp. and Pseudomonas sp. in soil and the plant rhizosphere. The usefulness of these various microcosms as a tool for risk assessment is underscored by the ease in obtaining soil from a proposed field release site to evaluate subsequent GEM fate and survival.

  14. Influence of linear alkylbenzene sulfonate (LAS) on the structure of Alphaproteobacteria, Actinobacteria, and Acidobacteria communities in a soil microcosm.

    Science.gov (United States)

    Sánchez-Peinado, M del Mar; González-López, Jesús; Martínez-Toledo, M Victoria; Pozo, Clementina; Rodelas, Belén

    2010-03-01

    Linear alkylbenzene sulfonate (LAS) is the most used anionic surfactant in a worldwide scale and is considered a high-priority pollutant. LAS is regarded as a readily biodegradable product under aerobic conditions in aqueous media and is mostly removed in wastewater treatment plants, but an important fraction (20-25%) is immobilized in sewage sludge and persists under anoxic conditions. Due to the application of the sludge as a fertilizer, LAS reaches agricultural soil, and therefore, microbial toxicity tests have been widely used to evaluate the influence of LAS on soil microbial ecology. However, molecular-based community-level analyses have been seldom applied in studies regarding the effects of LAS on natural or engineered systems, and, to our knowledge, there are no reports of their use for such appraisals in agricultural soil. In this study, a microcosm system is used to evaluate the effects of a commercial mixture of LAS on the community structure of Alphaproteobacteria, Actinobacteria, and Acidobacteria in an agricultural soil. The microcosms consisted of agricultural soil columns (800 g) fed with sterile water (8 ml h(-1)) added of different concentration of LAS (10 or 50 mg l(-1)) for periods of time up to 21 days. Sterile water was added to control columns for comparison. The structures of Alphaproteobacteria, Actinobacteria, and Acidobacteria communities were analyzed by a cultivation independent method (temperature gradient gel electrophoresis (TGGE) separation of polymerase chain reaction (PCR)-amplified partial 16S rRNA genes). Relevant populations were identified by subsequent reamplification, DNA sequencing, and database comparisons. Cluster analysis of the TGGE fingerprints taking into consideration both the number of bands and their relative intensities revealed that the structure of the Alphaproteobacteria community was significantly changed in the presence of LAS, at both concentrations tested. The average number of bands was significantly

  15. Biological 12C-13C fractionation increases with increasing community-complexity in soil microcosms

    DEFF Research Database (Denmark)

    Yang, Weijun; Magid, Jakob; Christensen, Søren

    2014-01-01

    -rates and determine the trophic level of organisms in biological systems. While it is widely accepted that 15N-accumulates in natural food-chains, it is disputed to which extent this is the case for C-13. We constructed sand-microcosms inoculated with a dilution series of soil organisms and amended with glucose......Isotope fractionation is a ubiquitous phenomenon in natural ecosystems. When chemical elements move through food chains, natural isotope ratios change because biological processes tend to discriminate against heavier isotopes. This effect can be used to trace flows of matter, estimate process...

  16. Fate and behaviour of phenanthrene in the natural and artificial soils

    International Nuclear Information System (INIS)

    Hofman, Jakub; Rhodes, Angela; Semple, Kirk T.

    2008-01-01

    OECD artificial soil has been used routinely as a standardized substrate for soil toxicity tests. However, can be the fate, behaviour and effects of contaminants in artificial soil extrapolated to natural soils? The aim of our study was to verify this hypothesis by comparing the loss, extraction, and bioavailability of phenanthrene in three artificial and three natural soils of comparable organic carbon content. Soils were spiked with 14 C-phenanthrene and total 14 C-activity change, the fractions extracted by dichloromethane, 70% ethanol, and hydroxypropyl-β-cyclodextrin, the fraction mineralized by Pseudomonas sp., and taken up by Enchytraeus albidus were measured after 1, 14, 42, and 84 d aging. The loss, extraction, biodegradation and uptake were several times lower in the artificial than natural soils and these differences increased with increasing soil-phenanthrene contact time. These results imply that artificial soil should be used cautiously for the prediction of fate and behaviour in natural soils. - Artificial soils show substantially different fate and behaviour of phenanthrene than natural soils, which cannot be easily extrapolated or modelled

  17. Developing and using artificial soils to analyze soil microbial processes

    Science.gov (United States)

    Gao, X.; Cheng, H. Y.; Boynton, L.; Masiello, C. A.; Silberg, J. J.

    2017-12-01

    Microbial diversity and function in soils are governed by soil characteristics such as mineral composition, particles size and aggregations, soil organic matter (SOM), and availability of nutrients and H2O. The spatial and temporal heterogeneity of soils creates a range of niches (hotspots) differing in the availability of O2, H2O, and nutrients, which shapes microbial activities at scales ranging from nanometer to landscape. Synthetic biologists often examine microbial response trigged by their environment conditions in nutrient-rich aqueous media using single strain microbes. While these studies provided useful insight in the role of soil microbes in important soil biogeochemical processes (e.g., C cycling, N cycling, etc.), the results obtained from the over-simplified model systems are often not applicable natural soil systems. On the contrary, soil microbiologists examine microbial processes in natural soils using longer incubation time. However, due to its physical, chemical and biological complexity of natural soils, it is often difficult to examine soil characteristics independently and understand how each characteristic influences soil microbial activities and their corresponding soil functioning. Therefore, it is necessary to bridge the gap and develop a model matrix to exclude unpredictable influences from the environment while still reliably mimicking real environmental conditions. The objective of this study is to design a range of ecologically-relevant artificial soils with varying texture (particle size distribution), structure, mineralogy, SOM content, and nutrient heterogeneity. We thoroughly characterize the artificial soils for pH, active surface area and surface morphology, cation exchange capacity (CEC), and water retention curve. We demonstrate the effectiveness of the artificial soils as useful matrix for microbial processes, such as microbial growth and horizontal gene transfer (HGT), using the gas-reporting biosensors recently developed in

  18. Roots affect the response of heterotrophic soil respiration to temperature in tussock grass microcosms.

    Science.gov (United States)

    Graham, Scott L; Millard, Peter; Hunt, John E; Rogers, Graeme N D; Whitehead, David

    2012-07-01

    While the temperature response of soil respiration (R(S)) has been well studied, the partitioning of heterotrophic respiration (R(H)) by soil microbes from autotrophic respiration (R(A)) by roots, known to have distinct temperature sensitivities, has been problematic. Further complexity stems from the presence of roots affecting R(H), the rhizosphere priming effect. In this study the short-term temperature responses of R(A) and R(H) in relation to rhizosphere priming are investigated. Temperature responses of R(A), R(H) and rhizosphere priming were assessed in microcosms of Poa cita using a natural abundance δ(13)C discrimination approach. The temperature response of R(S) was found to be regulated primarily by R(A), which accounted for 70 % of total soil respiration. Heterotrophic respiration was less sensitive to temperature in the presence of plant roots, resulting in negative priming effects with increasing temperature. The results emphasize the importance of roots in regulating the temperature response of R(S), and a framework is presented for further investigation into temperature effects on heterotrophic respiration and rhizosphere priming, which could be applied to other soil and vegetation types to improve models of soil carbon turnover.

  19. Transfer of elements relevant to nuclear fuel cycle from soil to boreal plants and animals in experimental meso- and microcosms

    Energy Technology Data Exchange (ETDEWEB)

    Tuovinen, Tiina S., E-mail: tiina.tuovinen@uef.fi [Department of Environmental Science, University of Eastern Finland, P.O. Box 1627, FI-70211 Kuopio (Finland); Kasurinen, Anne; Häikiö, Elina [Department of Environmental Science, University of Eastern Finland, P.O. Box 1627, FI-70211 Kuopio (Finland); Tervahauta, Arja [Department of Biology, University of Eastern Finland, P.O. Box FI-70211, Kuopio (Finland); Makkonen, Sari; Holopainen, Toini; Juutilainen, Jukka [Department of Environmental Science, University of Eastern Finland, P.O. Box 1627, FI-70211 Kuopio (Finland)

    2016-01-01

    Uranium (U), cobalt (Co), molybdenum (Mo), nickel (Ni), lead (Pb), thorium (Th) and zinc (Zn) occur naturally in soil but their radioactive isotopes can also be released into the environment during the nuclear fuel cycle. The transfer of these elements was studied in three different trophic levels in experimental mesocosms containing downy birch (Betula pubescens), narrow buckler fern (Dryopteris carthusiana) and Scandinavian small-reed (Calamagrostis purpurea ssp. Phragmitoides) as producers, snails (Arianta arbostorum) as herbivores, and earthworms (Lumbricus terrestris) as decomposers. To determine more precisely whether the element uptake of snails is mainly via their food (birch leaves) or both via soil and food, a separate microcosm experiment was also performed. The element uptake of snails did not generally depend on the presence of soil, indicating that the main uptake route was food, except for U, where soil contact was important for uptake when soil U concentration was high. Transfer of elements from soil to plants was not linear, i.e. it was not correctly described by constant concentration ratios (CR) commonly applied in radioecological modeling. Similar nonlinear transfer was found for the invertebrate animals included in this study: elements other than U were taken up more efficiently when element concentration in soil or food was low. - Highlights: • We studied transfer of elements in boreal food chain using meso- and microcosms. • Elements related to nuclear fuel cycle and mining were examined. • Higher uptake at lower soil concentrations was observed for primary producers. • Snails took up elements mainly from food but for U also soil was an element source. • Non-linear transfer of essential elements was observed for herbivore and decomposer.

  20. Incorporating detrital conditioning in outdoor microcosms dosed with JP-8 jet fuel

    International Nuclear Information System (INIS)

    Matthews, R.A.; Markiewicz, A.; Harter, V.; Landis, W.G.

    1995-01-01

    The authors have developed an outdoor microcosm system that incorporates detrital conditioning to test the hypothesis that microbiota play a critical role in altering the community response to hydrocarbon toxicants. The microcosms were constructed using 568 L tanks, arranged in 6 units of 4 tanks, with each unit equidistant from a central conditions tank (CT). During pre-treatment, the microcosms and CT were filled with nutrient-amended well water, artificial sediment, leaf packs containing dried maple leaves, elodea fragment, and unglazed tiles for periphyton growth. Water circulation was maintained at the rate of 24 exchanges per day. After four weeks, invertebrates from local ponds were added to the CT. Leafpacks were added to the CT and microcosms every two weeks; eight week old packs were discarded after returning invertebrates to the CT. On a weekly basis, 25% of the sediments, leaf packs, tiles, and elodea from each microcosms were transferred to another microcosm; the CT walls and tiles were scraped; an the water quality was monitored. Circulation was discontinued one week prior to dosing. On 4/12/96, the microcosms were dosed to contain 0--0.25 microg/L of JP-8 jet fuel. Within two weeks the GC/MS hydrocarbon concentrations were very low in the water column of the highest treatment group. There has been little acute toxicity, despite selecting doses that caused severe, acute toxicity in laboratory microcosm studies. The presence of a complex, detritus-based microbial community appears to mitigate the influences of the toxicant on the microcosms

  1. KINETIC MODELLING AND HALF LIFE STUDY OF ADSORPTIVE BIOREMEDIATION OF SOIL ARTIFICIALLY CONTAMINATED WITH BONNY LIGHT CRUDE OIL

    Directory of Open Access Journals (Sweden)

    Samuel Enahoro Agarry

    2015-06-01

    Full Text Available In this study, comparative potential effects of commercial activated carbon (CAC and plantain peel-derived biochar (PPBC of different particle sizes and dosage to stimulate petroleum hydrocarbon biodegradation in soil were investigated. Microcosms containing soil were spiked with weathered Bonny light crude oil (WBLCO (10% w/w and amended with different particle sizes (0.02, 0.07 and 0.48 mm and dosage (20, 30 and 40 g of CAC and PPBC, respectively. The bioremediation experiments were carried out for a period of 28 days under laboratory conditions. The results showed that there was a positive relationship between the rate of petroleum hydrocarbons reduction and presence of the CAC and PPBC in crude oil contaminated soil microcosms. The WBLCO biodegradation data fitted well to the first-order kinetic model. The model revealed that WBLCO contaminated-soil microcosms amended with CAC and PPBC had higher biodegradation rate constants (k as well as lower half-life times (t1/2 than unamended soil (natural attenuation remediation system. The rate constants increased while half-life times decreased with decreased particle size and increased dosage of amendment agents. ANOVA statistical analysis revealed that WBLCO biodegradation in soil was significantly (p = 0.05 influenced by the addition of CAC and biochar amendment agents, respectively. However, Tukey’s post hoc test (at p = 0.05 showed that there was no significant difference in the bioremediation efficiency of CAC and PPBC. Thus, amendment of soils with biochar has the potential to be an inexpensive, efficient, environmentally friendly and relatively novel strategy to mitigate organic compound-contaminated soil.

  2. Comparative Bioremediation of Crude Oil-Amended Tropical Soil Microcosms by Natural Attenuation, Bioaugmentation, or Bioenrichment

    Directory of Open Access Journals (Sweden)

    Vanessa Marques Alvarez

    2011-01-01

    Full Text Available Bioremediation is an efficient strategy for cleaning up sites contaminated with organic pollutants. In this study, we evaluated the effectiveness of monitored natural attenuation, bioenrichment, and bioaugmentation using a consortium of three actinomycetes strains in remediating two distinct typical Brazilian soils from the Atlantic Forest and Cerrado biomes that were contaminated with crude oil, with or without the addition of NaCl. Microcosms were used to simulate bioremediation treatments over a 120-day period. During this period, we monitored total petroleum hydrocarbons (TPHs and n-alkanes degradation and changes in bacterial communities. Over time, we found the degradation rate of n-alkanes was higher than TPH in both soils, independent of the treatment used. In fact, our data show that the total bacterial community in the soils was mainly affected by the experimental period of time, while the type of bioremediation treatment used was the main factor influencing the actinomycetes populations in both soils. Based on these data, we conclude that monitored natural attenuation is the best strategy for remediation of the two tropical soils studied, with or without salt addition.

  3. Genetically engineered Pseudomonas putida X3 strain and its potential ability to bioremediate soil microcosms contaminated with methyl parathion and cadmium.

    Science.gov (United States)

    Zhang, Rong; Xu, Xingjian; Chen, Wenli; Huang, Qiaoyun

    2016-02-01

    A multifunctional Pseudomonas putida X3 strain was successfully engineered by introducing methyl parathion (MP)-degrading gene and enhanced green fluorescent protein (EGFP) gene in P. putida X4 (CCTCC: 209319). In liquid cultures, the engineered X3 strain utilized MP as sole carbon source for growth and degraded 100 mg L(-1) of MP within 24 h; however, this strain did not further metabolize p-nitrophenol (PNP), an intermediate metabolite of MP. No discrepancy in minimum inhibitory concentrations (MICs) to cadmium (Cd), copper (Cu), zinc (Zn), and cobalt (Co) was observed between the engineered X3 strain and its host strain. The inoculated X3 strain accelerated MP degradation in different polluted soil microcosms with 100 mg MP kg(-1) dry soil and/or 5 mg Cd kg(-1) dry soil; MP was completely eliminated within 40 h. However, the presence of Cd in the early stage of remediation slightly delayed MP degradation. The application of X3 strain in Cd-contaminated soil strongly affected the distribution of Cd fractions and immobilized Cd by reducing bioavailable Cd concentrations with lower soluble/exchangeable Cd and organic-bound Cd. The inoculated X3 strain also colonized and proliferated in various contaminated microcosms. Our results suggested that the engineered X3 strain is a potential bioremediation agent showing competitive advantage in complex contaminated environments.

  4. Comparative Bioremediation of Crude Oil-Amended Tropical Soil Microcosms by Natural Attenuation, Bio augmentation, or Bio enrichment

    International Nuclear Information System (INIS)

    Alvarez, V.M; Marques, J.M; Korenblum, E; Seldin, L

    2011-01-01

    Bioremediation is an efficient strategy for cleaning up sites contaminated with organic pollutants. In this study, we evaluated the effectiveness of monitored natural attenuation, bio enrichment, and bio augmentation using a consortium of three actinomycetes strains in remediating two distinct typical Brazilian soils from the Atlantic Forest and Cerrado biomes that were contaminated with crude oil, with or without the addition of NaCl. Microcosms were used to simulate bioremediation treatments over a 120-day period. During this period, we monitored total petroleum hydrocarbons (TPHs) and n-alkanes degradation and changes in bacterial communities. Over time, we found the degradation rate of n-alkanes was higher than TPH in both soils, independent of the treatment used. In fact, our data show that the total bacterial community in the soils was mainly affected by the experimental period of time, while the type of bioremediation treatment used was the main factor influencing the actinomycetes populations in both soils. Based on these data, we conclude that monitored natural attenuation is the best strategy for remediation of the two tropical soils studied, with or without salt addition.

  5. Fate of metal resistance genes in arable soil after manure application in a microcosm study.

    Science.gov (United States)

    Xiong, Wenguang; Zeng, Zhenling; Zhang, Yiming; Ding, Xueyao; Sun, Yongxue

    2015-03-01

    Manure application contributes to the spread and persistence of metal resistance genes (MRGs) in the environment. We investigated the fate of copper (Cu) and zinc (Zn) resistance genes (pcoA, pcoD and zntA) in arable soil after Cu/Zn-containing manure application. Manure with or without addition of metals (Cu/Zn) was added in a soil microcosm over 2 months. Soil samples were collected for analysis on day 0, 30 and 60. The abundances of all MRGs (pcoA, pcoD and zntA) in manure group were significantly higher than those in untreated soil and manure+metals groups. All MRGs dissipated 1.2-1.3 times faster in manure group (from -90 ± 8% to -93 ± 7%) than those in manure+metals group (from -68 ± 8% to -78 ± 5%). The results indicated that manure from healthy pigs contributed to the occurrence of metals (Cu/Zn) and MRGs (pcoA, pcoD and zntA) in arable soil. The significant effects of manure application on the accumulation of pcoA, pcoD and zntA lasted for 1-2 months. Cu/Zn can slow down the dissipation of pcoA, pcoD and zntA after manure application. This is the first report to investigate the fate of MRGs in soil after manure application. Copyright © 2014 Elsevier Inc. All rights reserved.

  6. Effects of substrate type and arsenic dosage level on arsenic behavior in grassland microcosms. Part I. Preliminary results on 74As transport

    International Nuclear Information System (INIS)

    Draggan, S.

    1977-01-01

    Microcosm design is an important factor in interpreting results obtained from studies of the environmental effects, mobility and persistence of contaminants. The behavior of pentavalent arsenic and a radioarsenic tracer was studied in three substrate types exposed to differing levels of stable As dosage. Soil cores excised intact from a natural grassland ecosystem were considered to most reliably represent the natural system under study since they retained the soil structure, and closely simulated the abiotic and biotic complexity, of the grassland ecosystem. The behavior of 74 As in the components of intact soil core microcosms differed appreciably from that observed for the other microcosm types where soil underwent manipulation. These differences were explained primarily on the basis of differences in soil structure

  7. Manure biochar influence upon soil properties, phosphorus distribution and phosphatase activities: A microcosm incubation study.

    Science.gov (United States)

    Jin, Yi; Liang, Xinqiang; He, Miaomiao; Liu, Yu; Tian, Guangming; Shi, Jiyan

    2016-01-01

    Using manure-derived-biochar as an alternative phosphorus (P) source has bright future prospects to improve soil P status. A 98-day microcosm incubation experiment was set up for two soils which were amended with manure biochar at proportions of 0, 0.5% and 1.5%. Swine manure samples were air-dried and manure biochar was prepared by pyrolysis at 400 °C for 4 h. As determined by P-31 nuclear magnetic resonance ((31)P NMR) spectroscopy, manure biochar mainly increased the contents and fractions of orthophosphate and pyrophosphate in two soils, while decreased those of monoesters (P<0.05). At the end of incubation, 1.5% of manure biochar raised soil pH by 0.5 and 0.6 units, cation exchange capacity by 16.9% and 32.2%, and soil total P by 82.1% and 81.1% for silt loam and clay loam soils, respectively, as compared with those soils without biochar. Simultaneously, 1.5% of manure biochar decreased acid phosphomonoesterase activities by 18.6% and 34.0% for clay loam and silt loam, respectively; while it increased alkaline phosphomonoesterase activities by 28.5% and 95.1% for clay loam and silt loam, respectively. The enhancement of soil P availability after manure biochar addition was firstly due to the orthophosphate and pyrophosphate as the major P species in manure biochar which directly increased contents of soil inorganic P, and also attributed to the decomposition of some organic P like monoesters by enhanced alkaline phosphomonoesterase activities from manure biochar addition. Copyright © 2015 Elsevier Ltd. All rights reserved.

  8. Investigation of plutonium behaviour in artificially contaminated soil

    International Nuclear Information System (INIS)

    Lukshiene, B.; Druteikiene, R.

    2006-01-01

    The vertical migration and transformation of plutonium chemical forms artificially supplied to sandy loam columns after its exposure to natural conditions for about one year was investigated. An analysis of artificially contaminated samples after one year had shown that 81% of 239 Pu 4+ and 44% of 239 Pu 3+ were accumulated in the 0-5 cm layer of sandy loam. The data of sequential analysis of the same type of soil at the adequate artificial contamination level after one month exposure under laboratory conditions are presented as well. Pu 239 binding to soil geochemical fractions was rather uneven. The largest amount of Pu 239 (60 %) was determined in the residual fraction. Consequently, it can be assumed that organic substances and some inorganic compounds, which usually are the main components of a residual fraction, affects the retention and migration of plutonium in the soil. (authors)

  9. Investigation of plutonium behaviour in artificially contaminated soil

    International Nuclear Information System (INIS)

    Luksiene, B.; Druteikiene, R.

    2006-01-01

    The vertical migration and transformation of plutonium chemical forms artificially supplied to sandy loam columns after its exposure to natural conditions for about one year was investigated. An analysis of artificially contaminated samples after one year had shown that 81% of 239 Pu 4+ and 44% of 239 Pu 3+ were accumulated in the 0-5 cm layer of sandy loam. The data of sequential analysis of the same type of soil at the adequate artificial contamination level after one month exposure under laboratory conditions are presented as well. Pu 239 binding to soil geochemical fractions was rather uneven. The largest amount of Pu 239 (60%) was determined in the residual fraction. Consequently, it can be assumed that organic substances and some inorganic compounds, which usually are the main components of a residual fraction, affects the retention and migration of plutonium in the soil. (authors)

  10. Microbial Community and Functional Gene Changes in Arctic Tundra Soils in a Microcosm Warming Experiment

    Directory of Open Access Journals (Sweden)

    Ziming Yang

    2017-09-01

    Full Text Available Microbial decomposition of soil organic carbon (SOC in thawing Arctic permafrost is important in determining greenhouse gas feedbacks of tundra ecosystems to climate. However, the changes in microbial community structure during SOC decomposition are poorly known. Here we examine these changes using frozen soils from Barrow, Alaska, USA, in anoxic microcosm incubation at −2 and 8°C for 122 days. The functional gene array GeoChip was used to determine microbial community structure and the functional genes associated with SOC degradation, methanogenesis, and Fe(III reduction. Results show that soil incubation after 122 days at 8°C significantly decreased functional gene abundance (P < 0.05 associated with SOC degradation, fermentation, methanogenesis, and iron cycling, particularly in organic-rich soil. These observations correspond well with decreases in labile SOC content (e.g., reducing sugar and ethanol, methane and CO2 production, and Fe(III reduction. In contrast, the community functional structure was largely unchanged in the −2°C incubation. Soil type (i.e., organic vs. mineral and the availability of labile SOC were among the most significant factors impacting microbial community structure. These results demonstrate the important roles of microbial community in SOC degradation and support previous findings that SOC in organic-rich Arctic tundra is highly vulnerable to microbial degradation under warming.

  11. Principal chemical properties of artificial soil composed of fly ash and furfural residue

    Energy Technology Data Exchange (ETDEWEB)

    Feng, Y.J.; Li, F.; Wang, X.L.; Liu, X.M.; Zhang, L.N. [Shandong Agricultural University, Tai An (China). College of Resources & Environments

    2006-10-15

    To solve soil shortage in reclaiming subsided land of coal mines, the principal chemical properties of artificial soil formed by mixing organic furfural residue and inorganic fly ash were examined. The results indicated that the artificial soil was suitable for agriculture use after irrigation and desalination, the available nutrients in the artificial soil could satisfy the growth demand of plants, and the pH tended to the neutrality.

  12. The variability of standard artificial soils: Behaviour, extractability and bioavailability of organic pollutants

    International Nuclear Information System (INIS)

    Hofman, Jakub; Hovorková, Ivana; Semple, Kirk T.

    2014-01-01

    Highlights: • Artificial soils from different laboratories revealed different fates, behaviour and bioavailability of lindane and phenanthrene. • Lindane behaviour was related to organic carbon. • Phenanthrene behaviour was significantly affected by degrading microorganisms from peat. • Sterilization of artificial soils might reduce unwanted variability. -- Abstract: Artificial soil is an important standard medium and reference material for soil ecotoxicity bioassays. Recent studies have documented the significant variability of their basic properties among different laboratories. Our study investigated (i) the variability of ten artificial soils from different laboratories by means of the fate, extractability and bioavailability of phenanthrene and lindane, and (ii) the relationships of these results to soil properties and ageing. Soils were spiked with 14 C-phenanthrene and 14 C-lindane, and the total residues, fractions extractable by hydroxypropyl-β-cyclodextrin, and the fractions of phenanthrene mineralizable by bacteria were determined after 1, 14, 28 and 56 days. Significant temporal changes in total residues and extractable and mineralizable fractions were observed for phenanthrene, resulting in large differences between soils after 56 days. Phenanthrene mineralization by indigenous peat microorganisms was suggested as the main driver of that, outweighing the effects of organic matter. Lindane total residues and extractability displayed much smaller changes over time and smaller differences between soils related to organic matter. Roughly estimated, the variability between the artificial soils was comparable to natural soils. The implications of such variability for the results of toxicity tests and risk assessment decisions should be identified. We also suggested that the sterilization of artificial soils might reduce unwanted variability

  13. The variability of standard artificial soils: Behaviour, extractability and bioavailability of organic pollutants

    Energy Technology Data Exchange (ETDEWEB)

    Hofman, Jakub, E-mail: hofman@recetox.muni.cz [Research Centre for Toxic Compounds in the Environment (RECETOX), Faculty of Science, Masaryk University, Kamenice 753/5, Brno CZ-62500 (Czech Republic); Hovorková, Ivana [Research Centre for Toxic Compounds in the Environment (RECETOX), Faculty of Science, Masaryk University, Kamenice 753/5, Brno CZ-62500 (Czech Republic); Semple, Kirk T. [Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ (United Kingdom)

    2014-01-15

    Highlights: • Artificial soils from different laboratories revealed different fates, behaviour and bioavailability of lindane and phenanthrene. • Lindane behaviour was related to organic carbon. • Phenanthrene behaviour was significantly affected by degrading microorganisms from peat. • Sterilization of artificial soils might reduce unwanted variability. -- Abstract: Artificial soil is an important standard medium and reference material for soil ecotoxicity bioassays. Recent studies have documented the significant variability of their basic properties among different laboratories. Our study investigated (i) the variability of ten artificial soils from different laboratories by means of the fate, extractability and bioavailability of phenanthrene and lindane, and (ii) the relationships of these results to soil properties and ageing. Soils were spiked with {sup 14}C-phenanthrene and {sup 14}C-lindane, and the total residues, fractions extractable by hydroxypropyl-β-cyclodextrin, and the fractions of phenanthrene mineralizable by bacteria were determined after 1, 14, 28 and 56 days. Significant temporal changes in total residues and extractable and mineralizable fractions were observed for phenanthrene, resulting in large differences between soils after 56 days. Phenanthrene mineralization by indigenous peat microorganisms was suggested as the main driver of that, outweighing the effects of organic matter. Lindane total residues and extractability displayed much smaller changes over time and smaller differences between soils related to organic matter. Roughly estimated, the variability between the artificial soils was comparable to natural soils. The implications of such variability for the results of toxicity tests and risk assessment decisions should be identified. We also suggested that the sterilization of artificial soils might reduce unwanted variability.

  14. Mixed artificial grasslands with more roots improved mine soil infiltration capacity

    Science.gov (United States)

    Wu, Gao-Lin; Yang, Zheng; Cui, Zeng; Liu, Yu; Fang, Nu-Fang; Shi, Zhi-Hua

    2016-04-01

    Soil water is one of the critical limiting factors in achieving sustainable revegetation. Soil infiltration capacity plays a vital role in determining the inputs from precipitation and enhancing water storage, which are important for the maintenance and survival of vegetation patches in arid and semi-arid areas. Our study investigated the effects of different artificial grasslands on soil physical properties and soil infiltration capacity. The artificial grasslands were Medicago sativa, Astragalus adsurgens, Agropyron mongolicum, Lespedeza davurica, Bromus inermis, Hedysarum scoparium, A. mongolicum + Artemisia desertorum, A. adsurgens + A. desertorum and M. sativa + B. inermis. The soil infiltration capacity index (SICI), which was based on the average infiltration rate of stage I (AIRSI) and the average infiltration rate of stage III (AIRS III), was higher (indicating that the infiltration capacity was greater) under the artificial grasslands than that of the bare soil. The SICI of the A. adsurgens + A. desertorum grassland had the highest value (1.48) and bare soil (-0.59) had the lowest value. It was evident that artificial grassland could improve soil infiltration capacity. We also used principal component analysis (PCA) to determine that the main factors that affected SICI were the soil water content at a depth of 20 cm (SWC20), the below-ground root biomasses at depths of 10 and 30 cm (BGB10, BGB30), the capillary porosity at a depth of 10 cm (CP10) and the non-capillary porosity at a depth of 20 cm (NCP20). Our study suggests that the use of Legume-poaceae mixtures and Legume-shrub mixtures to create grasslands provided an effective ecological restoration approach to improve soil infiltration properties due to their greater root biomasses. Furthermore, soil water content, below-ground root biomass, soil capillary porosity and soil non-capillary porosity were the main factors that affect the soil infiltration capacity.

  15. Microcosm 2.011

    CERN Multimedia

    CERN Bulletin

    2011-01-01

    Microcosm, CERN's first exhibition centre, will soon be upgraded. While keeping its present character and many of its nice features, the use of new cutting-edge exhibition technologies together with an area for student experiments and physics demonstrations will make version 2.011 even more attractive to the general public and school classes.   Layout of the new Microcosm 2.011 exhibition. New Year, and a new look for Microcosm! CERN's popular exhibition centre will undergo a transformation that will see, among other things, the installation of a new area dedicated to modern physics experiments for school groups. “Microcosm will keep its main features and character,” says Rolf Landua, Head of the Education Group, which is in charge of the project. “While some parts will be replaced by more modern exhibition technologies and contemporary scenography, others will be moved to allow a better visitor flow and make room for the brand-new school lab and public demonstration...

  16. Biogeochemical modeling of CO2 and CH4 production in anoxic Arctic soil microcosms

    Science.gov (United States)

    Tang, Guoping; Zheng, Jianqiu; Xu, Xiaofeng; Yang, Ziming; Graham, David E.; Gu, Baohua; Painter, Scott L.; Thornton, Peter E.

    2016-09-01

    Soil organic carbon turnover to CO2 and CH4 is sensitive to soil redox potential and pH conditions. However, land surface models do not consider redox and pH in the aqueous phase explicitly, thereby limiting their use for making predictions in anoxic environments. Using recent data from incubations of Arctic soils, we extend the Community Land Model with coupled carbon and nitrogen (CLM-CN) decomposition cascade to include simple organic substrate turnover, fermentation, Fe(III) reduction, and methanogenesis reactions, and assess the efficacy of various temperature and pH response functions. Incorporating the Windermere Humic Aqueous Model (WHAM) enables us to approximately describe the observed pH evolution without additional parameterization. Although Fe(III) reduction is normally assumed to compete with methanogenesis, the model predicts that Fe(III) reduction raises the pH from acidic to neutral, thereby reducing environmental stress to methanogens and accelerating methane production when substrates are not limiting. The equilibrium speciation predicts a substantial increase in CO2 solubility as pH increases, and taking into account CO2 adsorption to surface sites of metal oxides further decreases the predicted headspace gas-phase fraction at low pH. Without adequate representation of these speciation reactions, as well as the impacts of pH, temperature, and pressure, the CO2 production from closed microcosms can be substantially underestimated based on headspace CO2 measurements only. Our results demonstrate the efficacy of geochemical models for simulating soil biogeochemistry and provide predictive understanding and mechanistic representations that can be incorporated into land surface models to improve climate predictions.

  17. Identification of degradation routes of metamitron in soil microcosms using 13C-isotope labeling.

    Science.gov (United States)

    Wang, Shizong; Miltner, Anja; Nowak, Karolina M

    2017-01-01

    Metamitron is one of the most commonly used herbicide in sugar beet and flower bulb cultures. Numerous laboratory and field studies on sorption and degradation of metamitron were performed. Detailed biodegradation studies in soil using 13 C-isotope labeling are still missing. Therefore, we aimed at providing a detailed turnover mass balance of 13 C 6 -metamitron in soil microcosms over 80 days. In the biotic system, metamitron mineralized rapidly, and 13 CO 2 finally constituted 60% of the initial 13 C 6 -metamitron equivalents. In abiotic control experiments CO 2 rose to only 7.4% of the initial 13 C 6 -metamitron equivalents. The 13 C label from 13 C 6 -metamitron was incorporated into microbial amino acids that were ultimately stabilized in the soil organic matter forming presumably harmless biogenic residues. Finally, 13 C label from 13 C 6 -metamitron was distributed between the 13 CO 2 and the 13 C-biogenic residues indicating nearly complete biodegradation. The parallel increase of 13 C-alanine, 13 C-glutamate and 13 CO 2 indicates that metamitron was initially biodegraded via the desamino-metamitron route suggesting its relevance in the growth metabolism. In later phases of biodegradation, the "Rhodococcus route" was indicated by the low 13 CO 2 evolution and the high relevance of the pyruvate pathway, which aims at biomolecule synthesis and seems to be related to starvation. This is a first report on the detailed degradation route of metamitron in soil. Copyright © 2016 Elsevier Ltd. All rights reserved.

  18. Decomposition in soil microcosms of leaves of the metallophyte Arabidopsis halleri: effect of leaf-associated heavy metals on biodegradation

    International Nuclear Information System (INIS)

    Boucher, Uriel; Balabane, May; Lamy, Isabelle; Cambier, Philippe

    2005-01-01

    More knowledge is needed concerning the disturbance of soil organic matter cycling due to heavy metal pollution. The present study deals with the impact of heavy metal pollution on litter breakdown. Our aim was to assess whether heavy metals initially present in the leaves of the metallophyte Arabidopsis halleri: (i) slow down the rate of C mineralization, in relation to metal toxicity towards microflora, and/or (ii) increase the amount of organic C resistant to biodegradation, in relation to an intrinsic resistance of metallophyte residues to biodegradation. We incubated uncontaminated soil samples with either metal-free or metal-rich plant material. Metal-free material was grown in a greenhouse, and metal-rich material was collected in situ. During the 2-month period of incubation, we measured evolved CO 2 -C and residual plant C in the coarse organic fraction. Our results of CO 2 -C evolution showed a similar mineralization from the microcosms amended with highly metal-rich leaves of A. halleri and the microcosms amended with the metal-free but otherwise similar plant material. Measuring residual plant C in its input size-fraction gave a more precise insight. Our results suggest that only the large pool of easily decomposable C mineralized similarly from metal-free and from metal-rich plant residues. The pool of less decomposable C seemed on the contrary to be preferentially preserved in the case of metal-rich material. These results support the hypothesis of an annual extra-accumulation in situ of such a slowly decomposable fraction of plant residues which could account to some extent for the observed accumulation of metallophyte litter on the surface of highly metal-polluted soils. - Decomposition of slowly decomposable fractions of metal-rich plant residues is slowed by the metals

  19. Short-term emissions of ammonia and carbon dioxide from cattle urine contaminated tropical grassland microcosm.

    Science.gov (United States)

    Majumdar, Deepanjan; Patel, Manoj; Drabar, Reena; Vyas, Manish

    2006-11-01

    The study was designed to understand the emissions of ammonia (NH(3)) and carbon dioxide (CO(2)) from a single cattle urination event on a tropical grassland and underline the significance of the emissions in the context of huge animal population grazing on large pasture areas in some countries. Emissions of ammonia (NH(3)) and carbon dioxide (CO(2)) were monitored for three weeks from a tropical grassland (dominated by Cynodon dactylon Pers.) microcosm contaminated with cow and buffalo urine. The grassland microcosms were treated with urine (50 and 100 ml of each) only once and irrigated with water once every week. Ammonia was sampled by an automatic sampling system comprising of a vacuum pump, three-way stopcocks and rubber tubing and an impinger containing suitable absorbing solution (H(2)SO(4)), connected to the tubing suitably. The sampled gas, after sucked by the vacuum pump and absorbed in H(2)SO(4), was allowed to enter the closed microcosm again maintaining internal pressure of the microcosm. Carbon dioxide was sampled by absorption in an alkali (NaOH) trap inside the microcosm. Both NH(3) and CO(2) emissions were highly variable temporally and there was no continuous increasing or decreasing emission trend with time. Respectively, 45 and 46% of total NH(3)-N were emitted within first 48 h from 50 and 100 ml cow urine application while the corresponding values for buffalo urine were 34 and 32%. Total NH(3)-N emissions, integrated for sampling days (i.e. 1, 2, 3, 4, 6, 15, 18 and 21st) were 11 and 6% in cow and 8 and 5% in buffalo urine, of the total-N added through 50 and 100 ml urine samples. Carbon dioxide emissions were standardized at 25 degrees C by using a suitable formula which were lower than actual emissions at actual soil temperature (> 25 degrees C). Carbon dioxide emission rates were classified on the basis of soil repiratory classification and classes ranged from moderately low soil activity up to unusually high soil activity, the latter

  20. Experimental terrestrial soil-core microcosm test protocol. A method for measuring the potential ecological effects, fate, and transport of chemicals in terrestrial ecosystems

    Energy Technology Data Exchange (ETDEWEB)

    Van Voris, P.; Tolle, D.A.; Arthur, M.F.

    1985-06-01

    In order to protect the environment properly and have a realistic appraisal of how a chemical will act in the environment, tests of ecological effects and chemical fate must be performed on complex assemblages of biotic and abiotic components (i.e., microcosms) as well as single species. This protocol is one which could be added to a series of tests recently developed as guidelines for Section 4 of the Toxic Substances Control Act (P.L. 94-469; U.S.C., Section 2601-2629). The terrestrial soil-core microcosm is designed to supply site-specific and possibly regional information on the probable chemical fate and ecological effects resulting from release of a chemical substance to a terrestrial ecosystem. The EPA will use the data resulting from this test system to compare the potential hazards of a chemical with others that have been previously evaluated.

  1. Effects of simulated rain on the transport of fonofos and carbofuran from agricultural soils in the three-part environmental microcosm

    International Nuclear Information System (INIS)

    Lichtenstein, E.P.; Liang, T.T.

    1987-01-01

    The effects of simulated rain on the transport and metabolism of [ 14 C]fonofos and [ 14 C]carbofuran from insecticide-treated soil through deeper insecticide-free soil layers into surface waters were studied under laboratory conditions in a three-component microcosm. Radiocarbon derived from both [ 14 C]fonofos and [ 14 C]carbofuran was transported with soil runoff water from the place of the insecticide soil application through previously insecticide-free deeper soil layers into aquaria water and its sediments. Due to the lower water solubility of fonofos, less of this chemical was transported with water than did occur with carbofuran. Water, after its percolation through insecticide-free soil, contained 1.3% and 15.3% of the originally applied fonofos- and carbofuran-derived radiocarbon and 14 C]fonofos-treated soils resulted in lower insect mortalities than did exposure of larvae to comparable water samples from [ 14 C]carbofuran-treated soils. Thirty-six days after the start of the experiments and 21 days after the last rain application, aquaria water plus sediments from [ 14 C]fonofos- or [ 14 C]carbofuran-treated soils contained a total of 1.3% and 6.0% of the originally applied radiocarbon, respectively, but no fonofos and less than 0.1% of the originally applied carbofuran

  2. Linking stoichiometric homeostasis of microorganisms with soil phosphorus dynamics in wetlands subjected to microcosm warming.

    Directory of Open Access Journals (Sweden)

    Hang Wang

    Full Text Available Soil biogeochemical processes and the ecological stability of wetland ecosystems under global warming scenarios have gained increasing attention worldwide. Changes in the capacity of microorganisms to maintain stoichiometric homeostasis, or relatively stable internal concentrations of elements, may serve as an indicator of alterations to soil biogeochemical processes and their associated ecological feedbacks. In this study, an outdoor computerized microcosm was set up to simulate a warmed (+5°C climate scenario, using novel, minute-scale temperature manipulation technology. The principle of stoichiometric homeostasis was adopted to illustrate phosphorus (P biogeochemical cycling coupled with carbon (C dynamics within the soil-microorganism complex. We hypothesized that enhancing the flux of P from soil to water under warming scenarios is tightly coupled with a decrease in homeostatic regulation ability in wetland ecosystems. Results indicate that experimental warming impaired the ability of stoichiometric homeostasis (H to regulate biogeochemical processes, enhancing the ecological role of wetland soil as an ecological source for both P and C. The potential P flux from soil to water ranged from 0.11 to 34.51 mg m(-2 d(-1 in the control and 0.07 to 61.26 mg m(-2 d(-1 in the warmed treatment. The synergistic function of C-P acquisition is an important mechanism underlying C∶P stoichiometric balance for soil microorganisms under warming. For both treatment groups, strongly significant (p<0.001 relationships fitting a negative allometric power model with a fractional exponent were found between n-HC∶P (the specialized homeostatic regulation ability as a ratio of soil highly labile organic carbon to dissolved reactive phosphorus in porewater and potential P flux. Although many factors may affect soil P dynamics, the n-HC∶P term fundamentally reflects the stoichiometric balance or interactions between the energy landscape (i.e., C and flow of

  3. Microcosm reloaded!

    CERN Multimedia

    Stefania Pandolfi

    2015-01-01

    On 20 July, Microcosm reopened its doors to the public. CERN’s guides are already leading many enthusiastic visitors through the new attractions of the popular exhibition. More areas will reopen progressively over the coming weeks before the official inauguration this autumn.   A group of visitors is guided through the new Microcosm exhibit. After six months of extensive refurbishment work, Microcosm is back and open for public visits. As some installations are not yet up and running, CERN’s guides are there to provide visitors with additional explanations. “The two groups I guided were amazed to see real detector components before their eyes, laid out in inviting and informative displays,” says Achintya Rao, member of the CMS collaboration and a CERN guide. “The life-sized CMS mock-up and the CCC panorama are excellent locations to have in-depth conversations with enthusiastic visitors and give them a glimpse into everyday life at CERN.&...

  4. Targeting the environmental assessment of veterinary drugs with the multi-species-soil system (MS{center_dot}3) agricultural soil microcosms: the ivermectin case study

    Energy Technology Data Exchange (ETDEWEB)

    Carbonell-Martin, G.; Pro-Gonzalez, J.; Aragones-Grunert, P.; Babib-Vich, M. M.; Fernandez-Rorija, C.; Tarazona-Lafarga, J. V.

    2011-07-01

    The environmental risk assessment of the veterinary pharmaceutical ivermectin is receiving significant attention. This paper assesses the capacity of the MS{center_dot}3 soil microcosm as a tool for targeting the environmental impact assessment of veterinary drugs, using ivermectin as model. Two screening MS{center_dot}3 were performed using different European soils; one with a soil collected in an agricultural station near to Madrid, Spain and a second with a soil collected in a farm area close to York, UK. Soils were fortified with ivermectin at the following ranges: 0.01-10 mg kg{sup -}1 and 0.1-100 mg kg{sup -}1 in the Madrid and York studies, respectively. The effects on earthworms, plants and soil microorganisms were assessed in the Madrid soil. Toxicity tests on aquatic organisms (algae, cladocerans and in vitro fish cell line RTLW1) were also conducted with the leachates. No effects were observed in earthworms and plants at any tested concentration; reduction in the respiration rate (< 5%) of soil microorganisms was detected. Earthworm/soil bioconcentration factors decreased with the increase in soil concentrations and were higher for the York soil. Effects on daphnids were observed in tested leachates; based on measured levels of ivermectin in the leachates an EC50 of about 0.5{mu}gL{sup -}1 can be estimated. Comparisons based on toxicity data and equilibrium partitioning confirmed that the main risk is expected to be related to the high sensitivity of cladocerans. The results confirm that MS{center_dot}3 systems are cost-effective tools for assessing the impact of veterinary pharmaceuticals when applied to agricultural land, as previously demonstrated for antimicrobials. (Author) 39 refs.

  5. Justification of parameters artificial soil for laboratory research of cutting edge wear

    Directory of Open Access Journals (Sweden)

    I. V. Liskin

    2017-01-01

    Full Text Available For soil cultivation with the cutting tools of agricultural machines we can allocate three main types of shavings: shift, separation and continuous chip. The shift is most accurately expressed on sandy soils, a separation - on clay and loamy, continuous chip - on humid soils with the high content of clay particles. In field conditions researches of regularities of cutting edges wear are complicated because of heterogeneity of physic and mechanical properties of the soil and the changing climatic conditions. At laboratory modeling of soil conditions we can make experiments independent of weather and season. For development of the artificial soil and depend modeling of edges wear we considered conditions of creation of model with use mechanics of abrasive wear. Have allocated The major factors defining character and intensity of wear were allocated. The wearing-out ability of abrasive particles is defined by the radius of the curve of their sharp ledges. This radius depends on the particle size. The hardness of the soil influences wear of the cutting details and characterizes penetration into it of the cutting elements, and degree of fixedness of abrasive particles defines shaving type. We conseeder the soil as the abrasive environment with the particles which are in a condition of non-rigid fixing and have an opportunity to move relatively each other or to turn on itself under the influence of normal and tangential stress. Type of shaving when soil layer destruction depends on a ratio of the normal and tangential stress characterizing degree of fixedness of firm particles. We conducted researches of physic and mechanical properties of the artificial soil on the basis of quartz sand and paraffin. Injection of the petrolatum into structure of the artificial soil reduces the hardness and degree of fixedness of firm particles, but the ceresin increases these indicators. The mechanical structure was changed due to introduction of dust-like cement and

  6. Soil architecture relationships with dynamic soil physical processes: a conceptual study using natural, artificial, and 3D-printed soil cores

    DEFF Research Database (Denmark)

    Lamandé, Mathieu; Schjønning, Per; Dal Ferro, Nicola

    Pore system architecture is a key feature for understanding physical, biological and chemical processes in soils. Development of visualisation technics, especially x-ray CT, during recent years has been useful in describing the complex relationships between soil architecture and soil functions. We...... believe that combining visualization with physical models is a step further towards a better understanding of these relationships. We conducted a concept study using natural, artificial and 3D-printed soil cores. Eight natural soil cores (100 cm3) were sampled in a cultivated stagnic Luvisol at two depths...... (topsoil and subsoil), representing contrasting soil pore systems. Cylinders (100 cm3) were produced from plastic or from autoclaved aerated concrete. Holes of diameters 1.5 and 3 mm were drilled in the cylinder direction for the plastic cylinder and for one of the AAC cylinders. All natural and artificial...

  7. Calibrating soil respiration measures with a dynamic flux apparatus using artificial soil media of varying porosity

    Science.gov (United States)

    John R. Butnor; Kurt H. Johnsen

    2004-01-01

    Measurement of soil respiration to quantify ecosystem carbon cyclingrequires absolute, not relative, estimates of soil CO2 efflux. We describe a novel, automated efflux apparatus that can be used to test the accuracy of chamber-based soil respiration measurements by generating known CO2 fluxes. Artificial soil is supported...

  8. Effects of sediment-spiked lufenuron on benthic macroinvertebrates in outdoor microcosms and single-species toxicity tests

    Energy Technology Data Exchange (ETDEWEB)

    Brock, T.C.M., E-mail: theo.brock@wur.nl [Alterra, Wageningen University and Research Centre, P.O. Box 47, 6700 AA Wageningen (Netherlands); Bas, D.A. [Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam (Netherlands); Belgers, J.D.M. [Alterra, Wageningen University and Research Centre, P.O. Box 47, 6700 AA Wageningen (Netherlands); Bibbe, L. [Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam (Netherlands); Boerwinkel, M-C.; Crum, S.J.H. [Alterra, Wageningen University and Research Centre, P.O. Box 47, 6700 AA Wageningen (Netherlands); Diepens, N.J. [Department of Aquatic Ecology and Water Quality Management, Wageningen University, P.O. Box 47, 6700 AA Wageningen (Netherlands); Kraak, M.H.S.; Vonk, J.A. [Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam (Netherlands); Roessink, I. [Alterra, Wageningen University and Research Centre, P.O. Box 47, 6700 AA Wageningen (Netherlands)

    2016-08-15

    -related responses observed in the microcosms are in accordance with the results of the 28-d laboratory toxicity tests. These tests showed that the insect C. riparius and the crustacean H. azteca were approximately two orders of magnitude more sensitive than the oligochaete L. variegatus. In our laboratory tests, using field-collected sediment, the lowest 28-d EC{sub 10} (0.49 μg a.s./g OC) was observed for C. riparius (endpoint survival), while for the standard OECD test with this species, using artificial sediment, a NOEC of 2.35 μg a.s./g OC (endpoint emergence) is reported. In this particular case, the sediment tier-1 effect assessment using the chronic EC{sub 10} (field-collected sediment) or chronic NOEC (artificial sediment) of C. riparius and an assessment factor of 10, seems to be protective for the treatment-related responses observed in the sediment-spiked microcosms.

  9. Comparison of Rooting Strategies to Explore Rock Fractures for Shallow Soil-Adapted Tree Species with Contrasting Aboveground Growth Rates: A Greenhouse Microcosm Experiment.

    Science.gov (United States)

    Nie, Yunpeng; Chen, Hongsong; Ding, Yali; Yang, Jing; Wang, Kelin

    2017-01-01

    For tree species adapted to shallow soil environments, rooting strategies that efficiently explore rock fractures are important because soil water depletion occurs frequently. However, two questions: (a) to what extent shallow soil-adapted species rely on exploring rock fractures and (b) what outcomes result from drought stress, have rarely been tested. Therefore, based on the expectation that early development of roots into deep soil layers is at the cost of aboveground growth, seedlings of three tree species ( Cyclobalanopsis glauca, Delavaya toxocarpa , and Acer cinnamomifolium ) with distinct aboveground growth rates were selected from a typical shallow soil region. In a greenhouse experiment that mimics the basic features of shallow soil environments, 1-year-old seedlings were transplanted into simulated microcosms of shallow soil overlaying fractured bedrock. Root biomass allocation and leaf physiological activities, as well as leaf δ 13 C values were investigated and compared for two treatments: regular irrigation and repeated cycles of drought stress. Our results show that the three species differed in their rooting strategies in the context of encountering rock fractures, however, these strategies were not closely related to the aboveground growth rate. For the slowest-growing seedling, C. glauca , percentages of root mass in the fractures, as well as in the soil layer between soil and bedrock increased significantly under both treatments, indicating a specialized rooting strategy that facilitated the exploration of rock fractures. Early investment in deep root growth was likely critical to the establishment of this drought-vulnerable species. For the intermediate-growing, A. cinnamomifolium , percentages of root mass in the bedrock and interface soil layers were relatively low and exhibited no obvious change under either treatment. This limited need to explore rock fractures was compensated by a conservative water use strategy. For the fast-growing, D

  10. Comparison of Rooting Strategies to Explore Rock Fractures for Shallow Soil-Adapted Tree Species with Contrasting Aboveground Growth Rates: A Greenhouse Microcosm Experiment

    Directory of Open Access Journals (Sweden)

    Yunpeng Nie

    2017-09-01

    Full Text Available For tree species adapted to shallow soil environments, rooting strategies that efficiently explore rock fractures are important because soil water depletion occurs frequently. However, two questions: (a to what extent shallow soil-adapted species rely on exploring rock fractures and (b what outcomes result from drought stress, have rarely been tested. Therefore, based on the expectation that early development of roots into deep soil layers is at the cost of aboveground growth, seedlings of three tree species (Cyclobalanopsis glauca, Delavaya toxocarpa, and Acer cinnamomifolium with distinct aboveground growth rates were selected from a typical shallow soil region. In a greenhouse experiment that mimics the basic features of shallow soil environments, 1-year-old seedlings were transplanted into simulated microcosms of shallow soil overlaying fractured bedrock. Root biomass allocation and leaf physiological activities, as well as leaf δ13C values were investigated and compared for two treatments: regular irrigation and repeated cycles of drought stress. Our results show that the three species differed in their rooting strategies in the context of encountering rock fractures, however, these strategies were not closely related to the aboveground growth rate. For the slowest-growing seedling, C. glauca, percentages of root mass in the fractures, as well as in the soil layer between soil and bedrock increased significantly under both treatments, indicating a specialized rooting strategy that facilitated the exploration of rock fractures. Early investment in deep root growth was likely critical to the establishment of this drought-vulnerable species. For the intermediate-growing, A. cinnamomifolium, percentages of root mass in the bedrock and interface soil layers were relatively low and exhibited no obvious change under either treatment. This limited need to explore rock fractures was compensated by a conservative water use strategy. For the fast

  11. Effects of artificial soil surface management on changes of ...

    African Journals Online (AJOL)

    Studies of size distribution, stability of the aggregates, and other soil properties are very important due to their influence on tilth, water infiltration, and nutrient ... Data measured for eight years on induced erosion experiments on a Ferralsol covered by artificial soil netting locally called sombrite at Campinas, Brazil, were used ...

  12. Soil water repellency of the artificial soil and natural soil in rocky slopes as affected by the drought stress and polyacrylamide.

    Science.gov (United States)

    Chen, Zhang; Wang, Ruixin; Han, Pengyuan; Sun, Hailong; Sun, Haifeng; Li, Chengjun; Yang, Lixia

    2018-04-01

    Soil water repellency (SWR) causes reduced soil water storage, enhanced runoff and reduced ecosystem productivity. Therefore, characterization of SWR is a prerequisite for effective environmental management. SWR has been reported under different soils, land uses and regions of the world, particularly in forest land and after wildfires; however, the understanding of this variable in the artificial soil of rocky slope eco-engineering is still rather limited. This study presented the characterization of SWR in the artificial soil affected by the polyacrylamide (PAM) and drought stress. There were two molecular weights of PAM, and the CK was without PAM application. Three types of soil were studied: natural soil and two types of artificial soil which have been sprayed for 1y and 5y, respectively. The drought stress experiments had three drought gradients, lasted for three weeks. Water repellency index (WRI) and soil-water contact angle (β) were determined using intrinsic sorptivity method by measuring the water sorptivity (S W ) and ethanol sorptivity (S E ) in all soil samples. The results showed that (1) Polyacrylamide treatments significantly increased S W by 3% to 38%, and reduced S E by 1% to 15%, WRI by 6% to 38%, β by 3% to 23% compared to the control group. Polyacrylamide treatments also increased water-stable aggregates content and total porosity by 22% to 33%, 11% to 20% relative to the control, while PAM with a higher molecular weight performed best. (2) The interaction between PAM and drought stress had a significant effect on WRI and β for all soil types (Pnatural soil. Copyright © 2017 Elsevier B.V. All rights reserved.

  13. Evaluation of terrestrial microcosms for assessing the fate and effects of genetically engineered microorganisms on ecological processes

    Energy Technology Data Exchange (ETDEWEB)

    Fredrickson, J.K.; Bentjen, S.A.; Bolton, H. Jr.; Li, S.W.; Ligotke, M.W.; McFadden, K.M.; Van Voris, P.

    1989-04-01

    This project evaluates and modifies the existing US Environmental Protection Agency's Office of Pesticides and Toxic Substances (EPA/OPTS) terrestrial microcosm test system and test protocols such that they can be used to determine the environmental fate and ecological hazards of genetically engineered microorganisms (GEMs). The intact soil-core microcosm represents terrestrial ecosystems, and when coupled with appropriate test protocols, such microcosms may be appropriate to define and limit risks associated with the intentional release of GEMs. The terrestrial microcosm test system was used to investigate the survival and transport of two model GEMs (Azospirillum lipoferum and Pseudomonas sp. Tn5 mutants) to various trophic levels and niches and through intact soil cores. Subsequent effects on nutrient cycling and displacement of indigenous microorganisms were evaluated. The model organisms were a diazotrophic root-colonizing bacterium (A. lipoferum) and a wheat root growth-inhibiting rhizobacterium (Pseudomonas sp.). The transposable element Tn5 was used as a genetic marker for both microorganisms in two separate experiments. The organisms were subjected to transposon mutagenesis using a broad host-range-mobilizable suicide plasmid. The transposon Tn5 conferred levels of kanamycin resistance up to 500 ..mu..g/ml (Pseudomonas sp.), which allowed for selection of the bacteria from environmental samples. The presence of Tn5 DNA in the genome of the model GEMs also allowed the use of Tn5 gene probes to confirm and enumerate the microorganisms in different samples from the microcosms. Two types of root growth-inhibiting Pseudomonas sp. Tn5 mutants were obtained and used in microcosm studies: those that lacked the ability to inhibit either wheat root growth or the growth of other microorganisms in vitro (tox/sup /minus//) and those which retained these properties (tox/sup +/). 53 refs., 7 figs., 6 tabs.

  14. Microbial functional diversity plays an important role in the degradation of polyhydroxybutyrate (PHB) in soil.

    Science.gov (United States)

    Dey, Samrat; Tribedi, Prosun

    2018-03-01

    Towards bioremediation of recalcitrant materials like synthetic polymer, soil has been recognized as a traditional site for disposal and subsequent degradation as some microorganisms in soil can degrade the polymer in a non-toxic, cost-effective, and environment friendly way. Microbial functional diversity is a constituent of biodiversity that includes wide range of metabolic activities that can influence numerous aspects of ecosystem functioning like ecosystem stability, nutrient availability, ecosystem dynamics, etc. Thus, in the current study, we assumed that microbial functional diversity could play an important role in polymer degradation in soil. To verify this hypothesis, we isolated soil from five different sites of landfill and examined several microbiological parameters wherein we observed a significant variation in heterotrophic microbial count as well as microbial activities among the soil microcosms tested. Multivariate analysis (principle component analysis) based on the carbon sources utilization pattern revealed that soil microcosms showed different metabolic patterns suggesting the variable distribution of microorganisms among the soil microcosms tested. Since microbial functional diversity depends on both microbial richness and evenness, Shannon diversity index was determined to measure microbial richness and Gini coefficient was determined to measure microbial evenness. The tested soil microcosms exhibited variation in both microbial richness and evenness suggesting the considerable difference in microbial functional diversity among the tested microcosms. We then measured polyhydroxybutyrate (PHB) degradation in soil microcosms after desired period of incubation of PHB in soil wherein we found that soil microcosms having higher functional diversity showed enhanced PHB degradation and soil microcosms having lower functional diversity showed reduced PHB degradation. We also noticed that all the tested soil microcosms showed similar pattern in both

  15. Physical and chemical properties of artificial potting soils; Jinko jiban ryokuka baiyodo no butsuri kagakuteki seishitsu

    Energy Technology Data Exchange (ETDEWEB)

    Kudo, T. [Kajima Corp., Tokyo (Japan)

    1999-09-30

    Artificial potting soils are developed mostly for roof garden, and a lot of products are now on the market. However, these products have the merits and demerits. Therefore, Kajima Corporation developed 'Kei-soil' and 'Souka-meijin' to make up defects of the existing artificial potting soils, and 'Eco-eco K' using waste at a rate of 100% with consideration for environment. The paper considered what kinds of quality these artificial potting soil products developed have from physical/chemical viewpoints. As a result, the following were made clear: (1) the artificial potting soil has more excellent physical property than chernozem; (2) Since 'Aqua-soil,' '{alpha}-base 2,' 'Viva-soil' and 'Soilen G' do not include fertilizer content very much, the manuring practice in planting is important; (3) 'Kei-soil,' 'Souka-meijin' and 'Eco-eco K' include fertilizer content. (translated by NEDO)

  16. Environmental effect and fate of selected phenols in aquatic ecosystems using microcosm approaches

    International Nuclear Information System (INIS)

    Portier, R.J.; Chen, H.M.; Meyers, S.P.

    1983-01-01

    Microbiological studies, together with physicochemical analyses of selected industrial source phenols of environmental significance, were conducted in continuous flow and carbon metabolism microcosms to determine the behavior of these priority pollutants in soil and sediment-water systems typical of coastal wetlands. Phenols used included 4- nitrophenol, 2,4,6-trichlorophenol, 2-chlorophenol, and phenol. The organophosphate, 14 C-UL-Methyl Parathion, was used as a benchmark toxicant control while 14 C-Ring-Phenol was employed for all phenolic compound additions. Microbial diversity, ATP, and specific enzyme systems (i.e., phosphatase, dehydrogenase) were continuously monitored along with 14 CO 2 expiration and 14 C assimilation by the cellular component. Residual analysis of all microcosm tests employed procedures using combined gas chromatography/high-performance liquid chromatography. Statistical analyses were conducted of variations of testing criteria, along with a ranking profile of relative biotransformation and biodegradation potential. Data presented confirm the validity of microcosm approaches and related correlation analysis in toxic substance fate investigations. 17 references, 6 figures, 1 table

  17. Differences in sorption behavior of the herbicide 4-chloro-2-methylphenoxyacetic acid on artificial soils as a function of soil pre-aging.

    Science.gov (United States)

    Waldner, Georg; Friesl-Hanl, Wolfgang; Haberhauer, Georg; Gerzabek, Martin H

    The sorption behavior of the herbicide 4-chloro-2-methylphenoxyacetic acid (MCPA) to three different artificial soil mixtures was investigated. Artificial soils serve as model systems for improving understanding of sorption phenomena. The soils consisted of quartz, ferrihydrite, illite, montmorillonite, and charcoal. In a previous study, several selected mixtures had been inoculated with organic matter, and microbial aging (incubation) had been performed for different periods of time (3, 12, and 18 months) before conducting the sorption experiments. The effect of this pre-incubation time on the sorption behavior was determined. Interaction of MCPA with soil surfaces was monitored by aqueous phase sorption experiments, using high-performance liquid chromatography/ultraviolet and in selected cases Fourier-transformed infrared spectroscopy. The sorption behavior showed large differences between differently aged soils; Freundlich and linear sorption model fits (with sorption constants K f , 1/ n exponents, and K d values, respectively) were given for pH = 3 and the unbuffered pH of ∼7. The largest extent of sorption from diluted solutions was found on the surfaces with a pre-incubation time of 3 months. Sorption increased at acidic pH values. Regarding the influence of aging of artificial soils, the following conclusions were drawn: young artificial soils exhibit stronger sorption at lower concentrations, with a larger K f value than aged soils. A correlation with organic carbon content was not confirmed. Thus, the sorption characteristics of the soils are more influenced by the aging of the organic carbon than by the organic carbon content itself.

  18. Soil mineral composition matters: response of microbial communities to phenanthrene and plant litter addition in long-term matured artificial soils.

    Science.gov (United States)

    Babin, Doreen; Vogel, Cordula; Zühlke, Sebastian; Schloter, Michael; Pronk, Geertje Johanna; Heister, Katja; Spiteller, Michael; Kögel-Knabner, Ingrid; Smalla, Kornelia

    2014-01-01

    The fate of polycyclic aromatic hydrocarbons (PAHs) in soil is determined by a suite of biotic and abiotic factors, and disentangling their role in the complex soil interaction network remains challenging. Here, we investigate the influence of soil composition on the microbial community structure and its response to the spiked model PAH compound phenanthrene and plant litter. We used long-term matured artificial soils differing in type of clay mineral (illite, montmorillonite) and presence of charcoal or ferrihydrite. The soils received an identical soil microbial fraction and were incubated for more than two years with two sterile manure additions. The matured artificial soils and a natural soil were subjected to the following spiking treatments: (I) phenanthrene, (II) litter, (III) litter + phenanthrene, (IV) unspiked control. Total community DNA was extracted from soil sampled on the day of spiking, 7, 21, and 63 days after spiking. Bacterial 16S rRNA gene and fungal internal transcribed spacer amplicons were quantified by qPCR and subjected to denaturing gradient gel electrophoresis (DGGE). DGGE analysis revealed that the bacterial community composition, which was strongly shaped by clay minerals after more than two years of incubation, changed in response to spiked phenanthrene and added litter. DGGE and qPCR showed that soil composition significantly influenced the microbial response to spiking. While fungal communities responded only in presence of litter to phenanthrene spiking, the response of the bacterial communities to phenanthrene was less pronounced when litter was present. Interestingly, microbial communities in all artificial soils were more strongly affected by spiking than in the natural soil, which might indicate the importance of higher microbial diversity to compensate perturbations. This study showed the influence of soil composition on the microbiota and their response to phenanthrene and litter, which may increase our understanding of

  19. A New Exhibition in Microcosm

    CERN Document Server

    2000-01-01

    Sebastien Pelletier explains states of matter to an enthusiastic group of youngsters during the opening of a new exhibition in Microcosm last week. The Fun with Physics workshop will be offered to all 13-14 year olds in school groups visiting CERN this year. The new Microcosm contents have been developed in collaboration with the local teaching community, and cover particles and the forces that act between them.

  20. A comparison of POPs bioaccumulation in Eisenia fetida in natural and artificial soils and the effects of aging.

    Science.gov (United States)

    Vlčková, Klára; Hofman, Jakub

    2012-01-01

    The close relationship between soil organic matter and the bioavailability of POPs in soils suggests the possibility of using it for the extrapolation between different soils. The aim of this study was to prove that TOC content is not a single factor affecting the bioavailability of POPs and that TOC based extrapolation might be incorrect, especially when comparing natural and artificial soils. Three natural soils with increasing TOC and three artificial soils with TOC comparable to these natural soils were spiked with phenanthrene, pyrene, lindane, p,p'-DDT, and PCB 153 and studied after 0, 14, 28, and 56 days. At each sampling point, total soil concentration and bioaccumulation in earthworms Eisenia fetida were measured. The results showed different behavior and bioavailability of POPs in natural and artificial soils and apparent effects of aging on these differences. Hence, direct TOC based extrapolation between various soils seems to be limited. Copyright © 2011 Elsevier Ltd. All rights reserved.

  1. Avoidance, biomass and survival response of soil dwelling (endogeic) earthworms to OECD artificial soil: potential implications for earthworm ecotoxicology.

    Science.gov (United States)

    Brami, C; Glover, A R; Butt, K R; Lowe, C N

    2017-05-01

    Soil dwelling earthworms are now adopted more widely in ecotoxicology, so it is vital to establish if standardised test parameters remain applicable. The main aim of this study was to determine the influence of OECD artificial soil on selected soil-dwelling, endogeic earthworm species. In an initial experiment, biomass change in mature Allolobophora chlorotica was recorded in Standard OECD Artificial Soil (AS) and also in Kettering Loam (KL). In a second experiment, avoidance behaviour was recorded in a linear gradient with varying proportions of AS and KL (100% AS, 75% AS + 25% KL, 50% KS + 50% KL, 25% AS + 75% KL, 100% KL) with either A. chlorotica or Octolasion cyaneum. Results showed a significant decrease in A. chlorotica biomass in AS relative to KL, and in the linear gradient, both earthworm species preferentially occupied sections containing higher proportions of KL over AS. Soil texture and specifically % composition and particle size of sand are proposed as key factors that influenced observed results. This research suggests that more suitable substrates are required for ecotoxicology tests with soil dwelling earthworms.

  2. Variability of atmospheric depositions of artificial radioelements and their transfer into soils

    International Nuclear Information System (INIS)

    Pourcelot, Laurent

    2008-01-01

    In this Habilitation thesis, I present the results and prospects of the main research topics that contribute to bettering our knowledge of the behaviour of artificial radioelements in the geosphere and biosphere. In the first chapter I present a summary of the research carried out for my thesis on the Oklo reactors. In the subsequent chapters I present my research work at the IRSN. The second chapter concerns the atmospheric depositions of radioactive contaminants. I have studied the principal environmental parameters involved in the empirical modelling of the transfer of artificial radioelements from the atmosphere to the soil. Here I essentially use measurements of artificial radioelements ( 137 Cs, plutonium, americium) in soils that reveal the variability of accidental depositions further to the Chernobyl disaster (paragraph 2.1) and chronic radioactive depositions coming from the atmospheric testing of nuclear weapons (paragraph 2.2). In the third chapter I address the problem of transfers of artificial radioelements into the soil. The interest of this lies in the fact that these transfers represent serious risks for man. Taken over the long term (in the months and years that follow the depositing of radioactive elements on the ground and plants), the transfers of radioactive pollutants into the soil are responsible for the contamination of both plants (transfer via the roots) and underground water and surface water (transfer after vertical migration). My research work into the transfers of radioactive pollutants in soils is centred on vertical migrations and root transfers, as both these processes can be studied through environmental samplings and measurements. More precisely, I have studied the migrations of radioactive pollutants and their geochemical analogues in different types of soils (paragraph 3.1) and the variability of the activities of radiostrontium and radiocesium in the compartments of permanent grassland zones (soil, grass, milk and cheese

  3. Citrate and malonate increase microbial activity and alter microbial community composition in uncontaminated and diesel-contaminated soil microcosms

    Science.gov (United States)

    Martin, Belinda C.; George, Suman J.; Price, Charles A.; Shahsavari, Esmaeil; Ball, Andrew S.; Tibbett, Mark; Ryan, Megan H.

    2016-09-01

    Petroleum hydrocarbons (PHCs) are among the most prevalent sources of environmental contamination. It has been hypothesized that plant root exudation of low molecular weight organic acid anions (carboxylates) may aid degradation of PHCs by stimulating heterotrophic microbial activity. To test their potential implication for bioremediation, we applied two commonly exuded carboxylates (citrate and malonate) to uncontaminated and diesel-contaminated microcosms (10 000 mg kg-1; aged 40 days) and determined their impact on the microbial community and PHC degradation. Every 48 h for 18 days, soil received 5 µmol g-1 of (i) citrate, (ii) malonate, (iii) citrate + malonate or (iv) water. Microbial activity was measured daily as the flux of CO2. After 18 days, changes in the microbial community were assessed by a community-level physiological profile (CLPP) and 16S rRNA bacterial community profiles determined by denaturing gradient gel electrophoresis (DGGE). Saturated PHCs remaining in the soil were assessed by gas chromatography-mass spectrometry (GC-MS). Cumulative soil respiration increased 4- to 6-fold with the addition of carboxylates, while diesel contamination resulted in a small, but similar, increase across all carboxylate treatments. The addition of carboxylates resulted in distinct changes to the microbial community in both contaminated and uncontaminated soils but only a small increase in the biodegradation of saturated PHCs as measured by the n-C17 : pristane biomarker. We conclude that while the addition of citrate and malonate had little direct effect on the biodegradation of saturated hydrocarbons present in diesel, their effect on the microbial community leads us to suggest further studies using a variety of soils and organic acids, and linked to in situ studies of plants, to investigate the role of carboxylates in microbial community dynamics.

  4. A comparison of POPs bioaccumulation in Eisenia fetida in natural and artificial soils and the effects of aging

    International Nuclear Information System (INIS)

    Vlčková, Klára; Hofman, Jakub

    2012-01-01

    The close relationship between soil organic matter and the bioavailability of POPs in soils suggests the possibility of using it for the extrapolation between different soils. The aim of this study was to prove that TOC content is not a single factor affecting the bioavailability of POPs and that TOC based extrapolation might be incorrect, especially when comparing natural and artificial soils. Three natural soils with increasing TOC and three artificial soils with TOC comparable to these natural soils were spiked with phenanthrene, pyrene, lindane, p,p′-DDT, and PCB 153 and studied after 0, 14, 28, and 56 days. At each sampling point, total soil concentration and bioaccumulation in earthworms Eisenia fetida were measured. The results showed different behavior and bioavailability of POPs in natural and artificial soils and apparent effects of aging on these differences. Hence, direct TOC based extrapolation between various soils seems to be limited. - Highlights: ► Artificial and natural soils with the same TOC content were used in this study. ► BAF and total concentration of five POPs were measured during 56 days after spiking. ► Bioaccumulation was significantly lower in NS than in AS with the same TOC. ► Direct extrapolation according to TOC was possible for soils with levels >10%. ► Microbial degradation probably influences PAHs bioavailability. - Organic matter is an important factor in the bioavailability of POPs in soils, but direct extrapolation based on TOC content might lead to incorrect results in risk assessment.

  5. Forming artificial soils from waste materials for mine site rehabilitation

    Science.gov (United States)

    Yellishetty, Mohan; Wong, Vanessa; Taylor, Michael; Li, Johnson

    2014-05-01

    Surface mining activities often produce large volumes of solid wastes which invariably requires the removal of significant quantities of waste rock (overburden). As mines expand, larger volumes of waste rock need to be moved which also require extensive areas for their safe disposal and containment. The erosion of these dumps may result in landform instability, which in turn may result in exposure of contaminants such as trace metals, elevated sediment delivery in adjacent waterways, and the subsequent degradation of downstream water quality. The management of solid waste materials from industrial operations is also a key component for a sustainable economy. For example, in addition to overburden, coal mines produce large amounts of waste in the form of fly ash while sewage treatment plants require disposal of large amounts of compost. Similarly, paper mills produce large volumes of alkaline rejected wood chip waste which is usually disposed of in landfill. These materials, therefore, presents a challenge in their use, and re-use in the rehabilitation of mine sites and provides a number of opportunities for innovative waste disposal. The combination of solid wastes sourced from mines, which are frequently nutrient poor and acidic, with nutrient-rich composted material produced from sewage treatment and alkaline wood chip waste has the potential to lead to a soil suitable for mine rehabilitation and successful seed germination and plant growth. This paper presents findings from two pilot projects which investigated the potential of artificial soils to support plant growth for mine site rehabilitation. We found that pH increased in all the artificial soil mixtures and were able to support plant establishment. Plant growth was greatest in those soils with the greatest proportion of compost due to the higher nutrient content. These pot trials suggest that the use of different waste streams to form an artificial soil can potentially be used in mine site rehabilitation

  6. Habitat Complexity in Aquatic Microcosms Affects Processes Driven by Detritivores.

    Directory of Open Access Journals (Sweden)

    Lorea Flores

    Full Text Available Habitat complexity can influence predation rates (e.g. by providing refuge but other ecosystem processes and species interactions might also be modulated by the properties of habitat structure. Here, we focussed on how complexity of artificial habitat (plastic plants, in microcosms, influenced short-term processes driven by three aquatic detritivores. The effects of habitat complexity on leaf decomposition, production of fine organic matter and pH levels were explored by measuring complexity in three ways: 1. as the presence vs. absence of habitat structure; 2. as the amount of structure (3 or 4.5 g of plastic plants; and 3. as the spatial configuration of structures (measured as fractal dimension. The experiment also addressed potential interactions among the consumers by running all possible species combinations. In the experimental microcosms, habitat complexity influenced how species performed, especially when comparing structure present vs. structure absent. Treatments with structure showed higher fine particulate matter production and lower pH compared to treatments without structures and this was probably due to higher digestion and respiration when structures were present. When we explored the effects of the different complexity levels, we found that the amount of structure added explained more than the fractal dimension of the structures. We give a detailed overview of the experimental design, statistical models and R codes, because our statistical analysis can be applied to other study systems (and disciplines such as restoration ecology. We further make suggestions of how to optimise statistical power when artificially assembling, and analysing, 'habitat complexity' by not confounding complexity with the amount of structure added. In summary, this study highlights the importance of habitat complexity for energy flow and the maintenance of ecosystem processes in aquatic ecosystems.

  7. Non-methane biogenic volatile organic compound emissions from boreal peatland microcosms under warming and water table drawdown

    DEFF Research Database (Denmark)

    Faubert, P; Tiiva, P; Nakam, TA

    2011-01-01

    assessed the combined effect of warming and water table drawdown on the BVOC emissions from boreal peatland microcosms. We also assessed the treatment effects on the BVOC emissions from the peat soil after the 7-week long experiment. Emissions of isoprene, monoterpenes, sesquiterpenes, other reactive VOCs...

  8. Estimating Penetration Resistance in Agricultural Soils of Ardabil Plain Using Artificial Neural Network and Regression Methods

    Directory of Open Access Journals (Sweden)

    Gholam Reza Sheykhzadeh

    2017-02-01

    Full Text Available Introduction: Penetration resistance is one of the criteria for evaluating soil compaction. It correlates with several soil properties such as vehicle trafficability, resistance to root penetration, seedling emergence, and soil compaction by farm machinery. Direct measurement of penetration resistance is time consuming and difficult because of high temporal and spatial variability. Therefore, many different regressions and artificial neural network pedotransfer functions have been proposed to estimate penetration resistance from readily available soil variables such as particle size distribution, bulk density (Db and gravimetric water content (θm. The lands of Ardabil Province are one of the main production regions of potato in Iran, thus, obtaining the soil penetration resistance in these regions help with the management of potato production. The objective of this research was to derive pedotransfer functions by using regression and artificial neural network to predict penetration resistance from some soil variations in the agricultural soils of Ardabil plain and to compare the performance of artificial neural network with regression models. Materials and methods: Disturbed and undisturbed soil samples (n= 105 were systematically taken from 0-10 cm soil depth with nearly 3000 m distance in the agricultural lands of the Ardabil plain ((lat 38°15' to 38°40' N, long 48°16' to 48°61' E. The contents of sand, silt and clay (hydrometer method, CaCO3 (titration method, bulk density (cylinder method, particle density (Dp (pychnometer method, organic carbon (wet oxidation method, total porosity(calculating from Db and Dp, saturated (θs and field soil water (θf using the gravimetric method were measured in the laboratory. Mean geometric diameter (dg and standard deviation (σg of soil particles were computed using the percentages of sand, silt and clay. Penetration resistance was measured in situ using cone penetrometer (analog model at 10

  9. Development of an alternative artificial soil for earthworm toxicity testing in tropical countries.

    NARCIS (Netherlands)

    de Silva, M.; van Gestel, C.A.M.

    2009-01-01

    The standard soil invertebrate toxicity tests developed by OECD and ISO use an artificial soil as the test substrate, which contains sphagnum peat as a component. This type of peat is not widely available. Investigation of possible alternative substrates using locally available materials therefore

  10. Variability of standard artificial soils: Physico-chemical properties and phenanthrene desorption measured by means of supercritical fluid extraction

    International Nuclear Information System (INIS)

    Bielská, Lucie; Hovorková, Ivana; Komprdová, Klára; Hofman, Jakub

    2012-01-01

    The study is focused on artificial soil which is supposed to be a standardized “soil like” medium. We compared physico-chemical properties and extractability of Phenanthrene from 25 artificial soils prepared according to OECD standardized procedures at different laboratories. A substantial range of soil properties was found, also for parameters which should be standardized because they have an important influence on the bioavailability of pollutants (e.g. total organic carbon ranged from 1.4 to 6.1%). The extractability of Phe was measured by supercritical fluid extraction (SFE) at harsh and mild conditions. Highly variable Phe extractability from different soils (3–89%) was observed. The extractability was strongly related (R 2 = 0.87) to total organic carbon content, 0.1–2 mm particle size, and humic/fulvic acid ratio in the following multiple regression model: SFE (%) = 1.35 * sand (%) − 0.77 * TOC (%)2 + 0.27 * HA/FA. - Highlights: ► We compared properties and extractability of Phe from 25 different artificial soils. ► Substantial range of soil properties was found, also for important parameters. ► Phe extractability was measured by supercritical fluid extraction (SFE) at 2 modes. ► Phe extractability was highly variable from different soils (3–89%). ► Extractability was strongly related to TOC, 0.1–2 mm particles, and HA/FA. - Significant variability in physico-chemical properties exists between artificial soils prepared at different laboratories and affects behavior of contaminants in these soils.

  11. Feeding activity of the earthworm Eisenia andrei in artificial soil.

    NARCIS (Netherlands)

    Jager, D.T.; Fleuren, R.H.L.J.; Roelofs, W.; de Groot, A.C.

    2003-01-01

    Quantitative information on the feeding activity of earthworms is scarce but this information is valuable in many eco(toxico)logical studies. In this study, the feeding activity of the compost worm Eisenia andrei is examined in artificial soil (OECD medium), with and without a high-quality food

  12. Environmental assessment of surfactant using aquatic microcosm system; Konuma no suiken seitaikei ni oyobosu kaimen kasseizai no microcosm system wo mochiita hyoka

    Energy Technology Data Exchange (ETDEWEB)

    Takamatsu, Y.; Matsumura, M. [University of Tsukuba, Tsukuba (Japan); Inamori, Y. [National Institute for Environmental Studies, Tsukuba (Japan); Sudo, R. [Tohoku University, Sendai (Japan). Faculty of Engineering

    1995-10-10

    Microcosm system was applied to assess effect of surfactants on aquatic ecosystem. Surfactants such as LAS and Soap were added to an aquatic flask-size microcosm consisting of four species of bacteria as decomposer, one species of ciliate protozoa (Cyclidium glaucoma), two rotifers (Philodina sp. and Lepadella sp.) and one aquatic oligochaete (Aeolosoma hemprichi) as predator, and a green alga (Chlorella sp.) and a filamentous blue-green alga (Tolypothrix sp.) as producer. In the system, NOEC (no observed effect concentration) of LAS was below 1.5mg{center_dot}l{sup -1}, whereas soap was below 30mg{center_dot}l{sup -1}. Microcosm test is a pertinent tool to assess the effect of surfactant on ecosystem because microcosm test makes it possible to evaluate the effect of surfactant from a viewpoint of the interaction of microorganisms, material cycle and energy flow. With these respects, microcosm test is useful environmental assessment method which can reflect aquatic ecosystem. 10 refs., 6 figs., 1 tab.

  13. Microcosm 2015: showcasing real objects, real people and real discoveries

    CERN Multimedia

    CERN Bulletin

    2014-01-01

    Every year since its inauguration in 1994, the well-loved Microcosm exhibition has played host to tens of thousands of students, tourists and VIPs alike. But the ever-changing CERN landscape warranted a new look for the exhibition, which was last updated in 2003. On 8 December, Microcosm will close for refurbishment, making way for a new, interactive exhibition space to be opened summer 2015.   In the Accelerator zone, Microcosm visitors will don the helmet of an LHC operator. Social media tools will be integrated into the exhibit, allowing visitors to share their "beam" with friends at home. (Conceptual art for the new Microcosm exhibition.) While the Globe of Science and Innovation provides a spectacular introduction to CERN's key messages, Microcosm has always employed a more didactic approach. The new Microcosm will continue this complementary approach, whilst also immersing visitors into the day-to-day life of CERN people. "We want to highlight the ama...

  14. Phyto remediation of PAH contaminated soil

    International Nuclear Information System (INIS)

    Petruzzelli, G.; Pedron, F.; Barbafieri, M.; Cervelli, St.; Vigna Guidi, G.

    2005-01-01

    Phyto-remediation may enhance degradation of organic compounds promoting an adequate substrate for microbial growth. The aim of this work was to evaluate the efficiency of two plant species, Lupinus albus and Zea mais, in the bio-remediation of a PAH contaminated soil. This soil has been collected in a contaminated industrial area in Italy characterized by PAH concentrations up to 16000 mg/Kg. Microcosms experiments were carried out by planting Lupinus albus and Zea mais in the polluted soil; controls without plants were run separately. Growing period lasted by three months. Plants favoured PAH biodegradation by percentages of 32% with Lupinus albus and 22% with Zea mais, with respect to non vegetated microcosms. (authors)

  15. Behind the scenes at Microcosm

    CERN Document Server

    Emma Sanders

    2015-01-01

    Works advance at Microcosm in preparation for a progressive opening of the new exhibitions from mid-July onwards.   Construction of the section on the LHC experiments (mid-June 2015).   The Microcosm exhibition space is undergoing a total revamp and will feature many new objects. Old favourites, such as the LHC tunnel model and the Linac module, will be brought up to date with more modern exhibition techniques. Another main thrust of the new exhibitions will be the focus on the people that make CERN work. This is both to show the huge diversity of expertise needed at CERN and also to help students envisage where a career in physics or engineering might take them. With the project getting the go-ahead last autumn and the closure of the Globe for building works starting from May this year, the new Microcosm exhibition areas will open progressively as and when installations are completed to ensure that summer visitors who haven’t booked a guided tour will have something to ...

  16. Fate and bioavailability of 14C-pyrene and 14C-lindane in sterile natural and artificial soils and the influence of aging

    International Nuclear Information System (INIS)

    Šmídová, Klára; Hofman, Jakub; Ite, Aniefiok E.; Semple, Kirk T.

    2012-01-01

    Soil organic matter is used to extrapolate the toxicity and bioavailability of organic pollutants between different soils. However, it has been shown that other factors such as microbial activity are crucial. The aim of this study was to investigate if sterilization can reduce differences in the fate and bioavailability of organic pollutants between different soils. Three natural soils with increasing total organic carbon (TOC) content were collected and three artificial soils were prepared to obtain similar TOCs. Soils were sterilized and spiked with 14 C-pyrene and 14 C-lindane. Total 14 C radioactivity, HPCD extractability, and bioaccumulation in Eisenia fetida were measured over 56 days. When compared to non-sterile soils, differences between the natural and artificial soils and the influence of soil-contaminant contact time were generally reduced in the sterile soils (especially with middle TOC). The results indicate the possibility of using sterile soils as “the worst case scenario” in soil ecotoxicity studies. - Highlights: ► Sterile artificial and natural soils with the same TOC content were used. ► The fate and behavior of two 14 C-POPs were studied over 56 days after spiking. ► Sterilization reduced differences between artificial and natural soils. ► There was no effect of time (aging) in POPs bioaccumulation. ► Sterile soils may be used as “the worst case scenario” in POPs availability studies. - Sterilization reduced the differences in POPs fate and bioavailability between artificial and natural soils with the same TOC content and eliminated the influence of soil contact time.

  17. Immobilization of Lead from Pb-Contaminated Soil Amended with Peat Moss

    Directory of Open Access Journals (Sweden)

    Seul-Ji Lee

    2013-01-01

    Full Text Available Immobilization of lead (Pb using soil amendments can reduce Pb toxicity and bioavailability in soil. This study evaluated Pb immobilization in a Pb-contaminated soil by using peat moss through various tests. The Pb-contaminated soil (2000 mg Pb·kg−1 was amended with 1%, 5%, and 10% of peat moss to immobilize Pb in the soil. The immobilization properties of Pb in the contaminated soil were evaluated by a column leaching experiment, a microcosm test, and a batch incubation test. Peat moss significantly reduced the Pb leaching in all of the experiments and more effectively reduced mobility and toxicity of Pb in the column leaching and microcosm tests than bioavailability in the batch incubation test. The immobilized lead from the soils amended with 1%, 5%, and 10% of peat moss was 37.9%, 87.1%, and 95.4% from the column leaching test, 18.5%, 90.9%, and 96.4% from the microcosm test, and 2.0%, 36.9%, and 57.9% from the NH4NO3 extraction method, respectively, indicating that peat moss can be effectively used for the remediation of Pb-contaminated soil.

  18. Corexit 9500 microcosm data

    Data.gov (United States)

    U.S. Environmental Protection Agency — Relative abundance of bacterial groups in the microcosms. This dataset is associated with the following publication: Techtman, S., M. Zhuang, P. Campo-Moreno, E....

  19. Artificial neural network for on-site quantitative analysis of soils using laser induced breakdown spectroscopy

    Energy Technology Data Exchange (ETDEWEB)

    El Haddad, J. [Univ. Bordeaux, LOMA, UMR 5798, F-33400 Talence (France); CNRS, LOMA, UMR 5798, F-33400 Talence (France); Villot-Kadri, M.; Ismaël, A.; Gallou, G. [IVEA Solution, Centre Scientifique d' Orsay, Bât 503, 91400 Orsay (France); Michel, K.; Bruyère, D.; Laperche, V. [BRGM, Service Métrologie, Monitoring et Analyse, 3 avenue Claude Guillemin, B.P 36009, 45060 Orléans Cedex (France); Canioni, L. [Univ. Bordeaux, LOMA, UMR 5798, F-33400 Talence (France); CNRS, LOMA, UMR 5798, F-33400 Talence (France); Bousquet, B., E-mail: bruno.bousquet@u-bordeaux1.fr [Univ. Bordeaux, LOMA, UMR 5798, F-33400 Talence (France); CNRS, LOMA, UMR 5798, F-33400 Talence (France)

    2013-01-01

    Nowadays, due to environmental concerns, fast on-site quantitative analyses of soils are required. Laser induced breakdown spectroscopy is a serious candidate to address this challenge and is especially well suited for multi-elemental analysis of heavy metals. However, saturation and matrix effects prevent from a simple treatment of the LIBS data, namely through a regular calibration curve. This paper details the limits of this approach and consequently emphasizes the advantage of using artificial neural networks well suited for non-linear and multi-variate calibration. This advanced method of data analysis is evaluated in the case of real soil samples and on-site LIBS measurements. The selection of the LIBS data as input data of the network is particularly detailed and finally, resulting errors of prediction lower than 20% for aluminum, calcium, copper and iron demonstrate the good efficiency of the artificial neural networks for on-site quantitative LIBS of soils. - Highlights: ► We perform on-site quantitative LIBS analysis of soil samples. ► We demonstrate that univariate analysis is not convenient. ► We exploit artificial neural networks for LIBS analysis. ► Spectral lines other than the ones from the analyte must be introduced.

  20. Artificial neural network for on-site quantitative analysis of soils using laser induced breakdown spectroscopy

    International Nuclear Information System (INIS)

    El Haddad, J.; Villot-Kadri, M.; Ismaël, A.; Gallou, G.; Michel, K.; Bruyère, D.; Laperche, V.; Canioni, L.; Bousquet, B.

    2013-01-01

    Nowadays, due to environmental concerns, fast on-site quantitative analyses of soils are required. Laser induced breakdown spectroscopy is a serious candidate to address this challenge and is especially well suited for multi-elemental analysis of heavy metals. However, saturation and matrix effects prevent from a simple treatment of the LIBS data, namely through a regular calibration curve. This paper details the limits of this approach and consequently emphasizes the advantage of using artificial neural networks well suited for non-linear and multi-variate calibration. This advanced method of data analysis is evaluated in the case of real soil samples and on-site LIBS measurements. The selection of the LIBS data as input data of the network is particularly detailed and finally, resulting errors of prediction lower than 20% for aluminum, calcium, copper and iron demonstrate the good efficiency of the artificial neural networks for on-site quantitative LIBS of soils. - Highlights: ► We perform on-site quantitative LIBS analysis of soil samples. ► We demonstrate that univariate analysis is not convenient. ► We exploit artificial neural networks for LIBS analysis. ► Spectral lines other than the ones from the analyte must be introduced

  1. MICROCOSM - INSTALLATION OF THE LHC MODEL

    CERN Multimedia

    2002-01-01

    This week, installation of a 6m long section of the LHC starts in Microcosm. This full-scale model is the first part of a new exhibition highlighting the technological challenges and the exciting physics of the LHC era. Many people at CERN have helped with the preparations for the model and the Microcosm team would like to thank all those involved. An inauguration for the press will take place at the start of the next school term.

  2. Towards sustainability: artificial intelligent based approach for soil stabilization using various pozzolans

    KAUST Repository

    Ouf, M. S.

    2012-01-01

    . This paper discusses attempts to reach optimum stabilization through: (1) Recognizing the relationship between the UCS/FSP of stabilized soil and the stabilization parameters using artificial neural network (ANN); and (2) Performing a backward optimization

  3. Artificial neural network models' application for radioactive substances' migration forecasting in soil

    International Nuclear Information System (INIS)

    Kovalenko, V.I.; Khil'ko, O.S.; Kundas, S.P.

    2009-01-01

    The work is indicated to the use of artificial neural network (ANN) models in program complex SPS for radioactive substances' migration forecasting in soil. For the problem solution two ANN models are used. One of them forecasts radioactive substances' migration, another carries out forecasting of physical and chemical soil properties. Program complex SPS allows to achieve a low error of forecasting (no more than 5 %) and high training speed. (authors)

  4. Revegetation of Acid Rock Drainage (ARD) Producing Slope Surface Using Phosphate Microencapsulation and Artificial Soil

    Science.gov (United States)

    Kim, Jae Gon

    2017-04-01

    Oxidation of sulfides produces acid rock drainage (ARD) upon their exposure to oxidation environment by construction and mining activities. The ARD causes the acidification and metal contamination of soil, surface water and groundwater, the damage of plant, the deterioration of landscape and the reduction of slope stability. The revegetation of slope surface is one of commonly adopted strategies to reduce erosion and to increase slope stability. However, the revegetation of the ARD producing slope surface is frequently failed due to its high acidity and toxic metal content. We developed a revegetation method consisting of microencapsualtion and artificial soil in the laboratory. The revegetation method was applied on the ARD producing slope on which the revegetation using soil coverage and seeding was failed and monitored the plant growth for one year. The phosphate solution was applied on sulfide containing rock to form stable Fe-phosphate mineral on the surface of sulfide, which worked as a physical barrier to prevent contacting oxidants such as oxygen and Fe3+ ion to the sulfide surface. After the microencapsulation, two artificial soil layers were constructed. The first layer containing organic matter, dolomite powder and soil was constructed at 2 cm thickness to neutralize the rising acidic capillary water from the subsurface and to remove the dissolved oxygen from the percolating rain water. Finally, the second layer containing seeds, organic matter, nutrients and soil was constructed at 3 cm thickness on the top. After application of the method, the pH of the soil below the artificial soil layer increased and the ARD production from the rock fragments reduced. The plant growth showed an ordinary state while the plant died two month after germination for the previous revegetation trial. No soil erosion occurred from the slope during the one year field test.

  5. Assessing artificial neural networks and statistical methods for infilling missing soil moisture records

    Science.gov (United States)

    Dumedah, Gift; Walker, Jeffrey P.; Chik, Li

    2014-07-01

    Soil moisture information is critically important for water management operations including flood forecasting, drought monitoring, and groundwater recharge estimation. While an accurate and continuous record of soil moisture is required for these applications, the available soil moisture data, in practice, is typically fraught with missing values. There are a wide range of methods available to infilling hydrologic variables, but a thorough inter-comparison between statistical methods and artificial neural networks has not been made. This study examines 5 statistical methods including monthly averages, weighted Pearson correlation coefficient, a method based on temporal stability of soil moisture, and a weighted merging of the three methods, together with a method based on the concept of rough sets. Additionally, 9 artificial neural networks are examined, broadly categorized into feedforward, dynamic, and radial basis networks. These 14 infilling methods were used to estimate missing soil moisture records and subsequently validated against known values for 13 soil moisture monitoring stations for three different soil layer depths in the Yanco region in southeast Australia. The evaluation results show that the top three highest performing methods are the nonlinear autoregressive neural network, rough sets method, and monthly replacement. A high estimation accuracy (root mean square error (RMSE) of about 0.03 m/m) was found in the nonlinear autoregressive network, due to its regression based dynamic network which allows feedback connections through discrete-time estimation. An equally high accuracy (0.05 m/m RMSE) in the rough sets procedure illustrates the important role of temporal persistence of soil moisture, with the capability to account for different soil moisture conditions.

  6. Creation artificial soil-ground at gardening of objects of landscape architecture in Western Siberia

    Directory of Open Access Journals (Sweden)

    Eremin Dmitry

    2017-01-01

    Full Text Available Now for creation of a fertile layer usually use peat-sandy mixes in various parities, which initially do not approach for long-term development of grasses. It leads to that the grassy cover on slopes of roads, city lawns within 2–3 years perishes and is replaced natural by weeds with the vegetation which is not forming strong of sod. The carried out analysis of granulometric structure of soils on which perennial grasses grow, has shown, that as a part of artificial soil the clay containing oozy particles (<0.001 mm should be an obligatory component. The developed optimising model has shown, that at observance of necessary conditions probably reception artificial soil of middle-loamy granulometric composition possessing optimum physical and agrochemical properties, necessary for long growth of perennial grassy vegetation. As local components it is necessary to use clay, small sand, peat in the parities received at calculation of optimising model. The parity between sand, peat and clay should make 1:2:7. For effect prevention acidification from peat and improvement of agrochemical properties it is necessary to add on 100 kg of a mix of 0.5 kg complex fertilize and 0.2 kg of a dolomitic flour that will provide nutrients to plants while in artificial soil it’s own microflora will not start to work.

  7. Distribution of natural and artificial radionuclides in chernozem soil/crop system from stationary experiments.

    Science.gov (United States)

    Sarap, Nataša B; Rajačić, Milica M; Đalović, Ivica G; Šeremešić, Srđan I; Đorđević, Aleksandar R; Janković, Marija M; Daković, Marko Z

    2016-09-01

    The present paper focuses on the determination of radiological characteristics of cultivated chernozem soil and crops from long-term field experiments, taking into account the importance of distribution and transfer of radionuclides in the soil-plant system, especially in agricultural cropland. The investigation was performed on the experimental fields where maize, winter wheat, and rapeseed were cultivated. Analysis of radioactivity included determination of the gross alpha and beta activity as a screening method, as well as the activities of the following radionuclides: natural ((210)Pb, (235)U, (238)U, (226)Ra, (232)Th, (40)K, (7)Be) and artificial ((90)Sr and (137)Cs). The activities of natural and artificial ((137)Cs) radionuclides were determined by gamma spectrometry, while the artificial radionuclide (90)Sr was determined by a radiochemical analytical method. Based on the obtained results for the specific activity of (40)K, (137)Cs, and (90)Sr, accumulation factors for these radionuclides were calculated in order to estimate transfer of radionuclides from soil to crops. The results of performed analyses showed that there is no increase of radioactivity that could endanger the food production through the grown crops.

  8. Semicontinuous microcosm study of aerobic cometabolism of trichloroethylene using toluene

    Energy Technology Data Exchange (ETDEWEB)

    Han, Y.L. [Department of Mineral and Petroleum Engineering, National Cheng Kung University, 1 University Avenue, Tainan 701, Taiwan (China); Kuo, M.C. Tom [Department of Mineral and Petroleum Engineering, National Cheng Kung University, 1 University Avenue, Tainan 701, Taiwan (China)], E-mail: mctkuobe@mail.ncku.edu.tw; Tseng, I.C. [Department of Life Sciences, National Cheng Kung University, 1 University Avenue, Tainan 701, Taiwan (China); Lu, C.J. [Department of Environmental Engineering, National Chung Hsing University, 250 Kuo Kuang Road, Taichung 402, Taiwan (China)

    2007-09-30

    A semicontinuous slurry-microcosm method was applied to mimic trichloroethylene (TCE) cometabolic biodegradation field results at the Que-Jen in-situ pilot study. The microcosm study confirmed the process of aerobic cometabolism of TCE using toluene as the primary substrate. Based on the nucleotide sequence of 16S rRNA genes, the toluene-oxidizing bacteria in microcosms were identified, i.e. Ralstonia sp. P-10 and Pseudomonasputida. The first-order constant of TCE-degradation rate was 0.5 day{sup -1} for both Ralstonia sp. P-10 and P.putida. The TCE cometabolic-biodegradation efficiency measured from the slurry microcosms was 46%, which appeared pessimistic compared to over 90% observed from the in-situ pilot study. The difference in the TCE cometabolic-biodegradation efficiency was likely due to the reactor configurations and the effective time duration of toluene presence in laboratory microcosms (1 days) versus in-situ pilot study (3 days). The results of microcosm experiments using different toluene-injection schedules supported the hypothesis. With a given amount of toluene injection, it is recommended to maximize the effective time duration of toluene presence in reactor design for TCE cometabolic degradation.

  9. Semicontinuous microcosm study of aerobic cometabolism of trichloroethylene using toluene

    International Nuclear Information System (INIS)

    Han, Y.L.; Kuo, M.C. Tom; Tseng, I.C.; Lu, C.J.

    2007-01-01

    A semicontinuous slurry-microcosm method was applied to mimic trichloroethylene (TCE) cometabolic biodegradation field results at the Que-Jen in-situ pilot study. The microcosm study confirmed the process of aerobic cometabolism of TCE using toluene as the primary substrate. Based on the nucleotide sequence of 16S rRNA genes, the toluene-oxidizing bacteria in microcosms were identified, i.e. Ralstonia sp. P-10 and Pseudomonasputida. The first-order constant of TCE-degradation rate was 0.5 day -1 for both Ralstonia sp. P-10 and P.putida. The TCE cometabolic-biodegradation efficiency measured from the slurry microcosms was 46%, which appeared pessimistic compared to over 90% observed from the in-situ pilot study. The difference in the TCE cometabolic-biodegradation efficiency was likely due to the reactor configurations and the effective time duration of toluene presence in laboratory microcosms (1 days) versus in-situ pilot study (3 days). The results of microcosm experiments using different toluene-injection schedules supported the hypothesis. With a given amount of toluene injection, it is recommended to maximize the effective time duration of toluene presence in reactor design for TCE cometabolic degradation

  10. Comparative Study of Crude Oil Contamination Effect on Industrial and Forest Soil Microbial Community

    Directory of Open Access Journals (Sweden)

    Nasrin Ansari

    2017-02-01

    Full Text Available Introduction: Petroleum hydrocarbons are widespread pollutant that enters to soil by some pathwayssuch as: Transportation of crude oil, conservation of oil compounds, crude oil spill and treatment process on refineries. Oil pollution has some ecological effect on soil that disturbed composition and diversity of microbial community. Also this pollution has some effects on microbial activity and enzymes of soil. Forests ecosystems may be polluted with petroleum hydrocarbons via different ways such as transportation and spill of crude oil from resource of petroleum storage. Industrial soil defined as the soils that located in industrial area such as petrochemical plant, mine, chemical factories and etc. These soils always contaminated to many pollutant such as: oil, diesel and heavy metals. These pollutants have some effects on the texture of the soil and microbial community. The aim of this research is to understand the effect of oil pollution on two different soils. Material and Methods: In order to evaluate the effect of crude oil on soil microbial community, two different soil samples were collected from industrial and forest soils. Six microcosms were designed in this experiment. Indeed each soil sample examined inthree microcosms asunpolluted microcosm, polluted microcosm, and polluted microcosm with nutrient supply of Nitrogen and PhosphorusSome factors were assayed in each microcosm during 120 days of experiment. The included study factors were: total heterotrophic bacteria, total crude oil degrading bacteria, dehydrogenase enzyme and crude oil biodegradation. For enumeration of heterotrophic bacteria nutrient agar medium was used. In this method serial dilutions were done from each soil and spread on nutrient agar medium then different colonies were counted. For enumeration of degrading bacteria Bushnel-Hass (BH medium were used. The composition of this medium was (g/lit: 1 gr KH2PO4, 1gr K2HPO4, 0.2 gr MgSO4.7H2O, 0.02 gr CaCl2, 1 gr NH4

  11. The texture, structure and nutrient availability of artificial soil on cut slopes restored with OSSS - Influence of restoration time.

    Science.gov (United States)

    Huang, Zhiyu; Chen, Jiao; Ai, Xiaoyan; Li, Ruirui; Ai, Yingwei; Li, Wei

    2017-09-15

    Outside soil spray seeding (OSSS) is widely used to restore cut slopes in southwest of China, and artificial soil is often sprayed onto cut slopes to establish a soil layer for revegetation. The stability of artificial soil layer and its supply of water and nutrients for plants is crucial for successful restoration. To evaluate the long-term effectiveness of OSSS, the texture, structure and nutrient availability of artificial soil were studied, various soil samples were obtained from three cut slopes with different restoration time (restored with OSSS in 1996, 2003 and 2007 respectively) and one natural developed slope (NS). The properties measured including soil particle size distribution (PSD), texture, fractal dimension of PSD (D m ), the bias (C S ) and peak convex (C E ) coefficients of aggregate size distribution, structure failure rate, bulk density, moisture, pH, soil organic carbon (SOC), calcium carbonate content, Available nitrogen (N A ), Available phosphorus (P A ), and Available potassium (K A ). The results showed that different restoration time resulted in significant differences in soil PSD, D m , C S , C E , structure failure rate, bulk density, moisture, pH, N A , and K A . And these properties improved with increasing restoration age. However, there is still a huge disparity in soil texture, structure, and the availability of nutrients and moisture between the cut slopes and NS over a restoration period of up to 17 years, and this is caused by the little fine particles and the lack of slow release fertilizers and organic fertilizers in the artificial soil, resulting in poorer soil structure stability, retention and availability of moisture and nutrients on the cut slopes. Overall, the OSSS technique shows a long-term effectiveness in southwest of China, but there is still room for improvement. Copyright © 2017 Elsevier Ltd. All rights reserved.

  12. Estimation of soil saturated hydraulic conductivity by artificial neural networks ensemble in smectitic soils

    Science.gov (United States)

    Sedaghat, A.; Bayat, H.; Safari Sinegani, A. A.

    2016-03-01

    The saturated hydraulic conductivity ( K s ) of the soil is one of the main soil physical properties. Indirect estimation of this parameter using pedo-transfer functions (PTFs) has received considerable attention. The Purpose of this study was to improve the estimation of K s using fractal parameters of particle and micro-aggregate size distributions in smectitic soils. In this study 260 disturbed and undisturbed soil samples were collected from Guilan province, the north of Iran. The fractal model of Bird and Perrier was used to compute the fractal parameters of particle and micro-aggregate size distributions. The PTFs were developed by artificial neural networks (ANNs) ensemble to estimate K s by using available soil data and fractal parameters. There were found significant correlations between K s and fractal parameters of particles and microaggregates. Estimation of K s was improved significantly by using fractal parameters of soil micro-aggregates as predictors. But using geometric mean and geometric standard deviation of particles diameter did not improve K s estimations significantly. Using fractal parameters of particles and micro-aggregates simultaneously, had the most effect in the estimation of K s . Generally, fractal parameters can be successfully used as input parameters to improve the estimation of K s in the PTFs in smectitic soils. As a result, ANNs ensemble successfully correlated the fractal parameters of particles and micro-aggregates to K s .

  13. Gene expression analysis of 4 biomarker candidates in Eisenia fetida exposed to an environmental metallic trace elements gradient: A microcosm study

    Energy Technology Data Exchange (ETDEWEB)

    Brulle, Franck; Lemiere, Sebastien [Univ Lille Nord de France, F-59000 Lille (France); LGCgE, Equipe Ecologie Numerique et Ecotoxicologie, Lille 1, F-59650 Villeneuve d' Ascq (France); Waterlot, Christophe; Douay, Francis [Univ Lille Nord de France, F-59000 Lille (France); LGCgE, Equipe Sols et Environnement, Groupe ISA, 48 boulevard Vauban, F-59046 Lille Cedex (France); Vandenbulcke, Franck, E-mail: franck.vandenbulcke@univ-lille1.fr [Univ Lille Nord de France, F-59000 Lille (France); LGCgE, Equipe Ecologie Numerique et Ecotoxicologie, Lille 1, F-59650 Villeneuve d' Ascq (France)

    2011-11-15

    Past activities of 2 smelters (Metaleurop Nord and Nyrstar) led to the accumulation of high amounts of Metal Trace Elements (TEs) in top soils of the Noyelles-Godault/Auby area, Northern France. Earthworms were exposed to polluted soils collected in this area to study and better understand the physiological changes, the mechanisms of acclimation, and detoxification resulting from TE exposure. Previously we have cloned and transcriptionally characterized potential biomarkers from immune cells of the ecotoxicologically important earthworm species Eisenia fetida exposed in vivo to TE-spiked standard soils. In the present study, analysis of expression kinetics of four candidate indicator genes (Cadmium-metallothionein, coactosin like protein, phytochelatin synthase and lysenin) was performed in E. fetida after microcosm exposures to natural soils exhibiting an environmental cadmium (Cd) gradient in a kinetic manner. TE body burdens were also measured. This microcosm study provided insights into: (1) the ability of the 4 tested genes to serve as expression biomarkers, (2) detoxification processes through the expression analysis of selected genes, and (3) influence of land uses on the response of potential biomarkers (gene expression or TE uptake). - Highlights: {yields} Expression biomarkers in animals exposed to Cadmium-contaminated field soils. {yields} Expression kinetics to test the ability of genes to serve as expression biomarkers. {yields} Study of detoxification processes through the expression analysis of selected genes.

  14. Comparative assessment of fungal augmentation treatments of a fine-textured and historically oil-contaminated soil.

    Science.gov (United States)

    Covino, Stefano; Stella, Tatiana; D'Annibale, Alessandro; Lladó, Salvador; Baldrian, Petr; Čvančarová, Monika; Cajthaml, Tomas; Petruccioli, Maurizio

    2016-10-01

    The removal of aged hydrophobic contaminants from fine-textured soils is a challenging issue in remediation. The objective of this study was to compare the efficacy of augmentation treatments to that of biostimulation in terms of total aliphatic hydrocarbon (TAH) and toxicity removal from a historically contaminated clay soil and to assess their impact on the resident microbial community. To this aim, Pleurotus ostreatus, Botryosphaeria rhodina and a combination of both were used as the inoculants while the addition of a sterilized lignocellulose mixture to soil (1:5, w/w) was used as a biostimulation approach. As opposed to the non-amended control soil, where no changes in TAH concentration and residual toxicity were observed after 60days, the activation of specialized bacteria was found in the biostimulated microcosms resulting in significant TAH removal (79.8%). The bacterial community structure in B. rhodina-augmented microcosms did not differ from the biostimulated microcosms due to the inability of the fungus to be retained within the resident microbiota. Best TAH removals were observed in microcosms inoculated with P. ostreatus alone (Po) and in binary consortium with B. rhodina (BC) (86.8 and 88.2%, respectively). In these microcosms, contaminant degradation exceeded their bioavailability thresholds determined by sequential supercritical CO2 extraction. Illumina metabarcoding of 16S rRNA gene showed that the augmentation with Po and BC led to lower relative abundances of Gram(+) taxa, Actinobacteria in particular, than those in biostimulated microcosms. Best detoxification, with respect to the non-amended incubation control, was found in Po microcosms where a drop in collembola mortality (from 90 to 22%) occurred. At the end of incubation, in both Po and BC, the relative abundances of P. ostreatus sequences were higher than 60% thus showing the suitability of this fungus in bioaugmentation-based remediation applications. Copyright © 2016 Elsevier B.V. All

  15. Research Progress of Artificial Forest in the Remediation of Heavy Metal Contaminated Soils

    Science.gov (United States)

    Jiafang, MA; Guangtao, MENG; Liping, HE; Guixiang, LI

    2017-01-01

    (1) Remediation of soil contaminated by heavy metals has become a hot topic in the world, and phytoremediation technology is the most widely used. (2) In addition to traditional economic benefits, ecological benefits of artificial forest have been more and more important, which are very helpful to soil polluted with heavy metals in the environment. (3) The characteristics of heavy metal pollution of soil and plantations of repair mechanism have been reviewed, and the current mining areas, wetlands, urban plantations on heavy metal elements have enriched the research results. The purpose is to find a new path for governance of heavy metal soil pollution.

  16. Closure of Microcosm for refurbishment

    CERN Multimedia

    2014-01-01

    Since 1994, the Microcosm exhibition has given the opportunity to visitors of all ages and backgrounds to have a first glimpse into the secrets of physics.   To ensure that Microcosm can continue fulfilling its educational aims at the same level of quality for many years to come, it is closing for renovation work on 8 December 2014 and is expected to reopen during Summer 2015. During the closure, the “Fun with Physics” workshop will not take place, but the Universe of Particles exhibition in the Globe and the Passport to the Big Bang circuit will remain accessible to the public, free of charge and with no need to book in advance.  Guided tours of CERN are also available (advance booking required via this page).

  17. Comparative toxicity of pentachlorophenol to three earthworm species in artificial soil

    Energy Technology Data Exchange (ETDEWEB)

    Fitzgerald, D.; Lanno, R.P.; Farwell, A.; Dixon, D.G. [Univ. of Waterloo, Ontario (Canada). Dept. of Biology

    1994-12-31

    Although methods for standardized toxicity tests with earthworms exist, many of the test parameters and conditions have not been validated in actual tests and with different species of worms. This study evaluated the toxicity of pentachlorophenol (PCP) to three species of earthworms, Lumbricus terrestris, Eisenia fetida, and Eudrilus eugeniae using various methods of data analysis and body residues. Tests were conducted in artificial soil for a period of 28 days or until an Acute Lethality Threshold (ALT) was reached. An intensive temporal sampling regime was applied to generate sufficient data for the accurate estimation of ALTs using both LC50/time and time-to-death/soil concentration methods of data analysis. L. terrestris was tested at 15 C, E. eugeniae at 24 C, and E. fetida at both temperatures. Total body residues of PCP were measured by GC following cryogenic separation of the lipid fraction of the worm. ALTs were significantly different between E. fetida and the two larger species of worms. No effect of temperature on the ALT for E. fetida was observed, although the time taken to reach the ALT increased at the lower temperature. The relationship of PCP residues at mortality will be discussed in terms of the effects of species, body size and temperature. Limitations of the artificial soil based upon growth curves of worms will also be examined.

  18. Thermal adaptation of heterotrophic soil respiration in laboratory microcosms.

    Science.gov (United States)

    Mark A. Bradford; Brian W. Watts; Christian A. Davies

    2010-01-01

    Respiration of heterotrophic microorganisms decomposing soil organic carbon releases carbon dioxide from soils to the atmosphere. In the short term, soil microbial respiration is strongly dependent on temperature. In the long term, the response of heterotrophic soil respiration to temperature is uncertain. However, following established evolutionary tradeoffs, mass-...

  19. Disentangling above- and below-ground facilitation drivers in arid environments: the role of soil microorganisms, soil properties and microhabitat.

    Science.gov (United States)

    Lozano, Yudi M; Armas, Cristina; Hortal, Sara; Casanoves, Fernando; Pugnaire, Francisco I

    2017-12-01

    Nurse plants promote establishment of other plant species by buffering climate extremes and improving soil properties. Soil biota plays an important role, but an analysis to disentangle the effects of soil microorganisms, soil properties and microclimate on facilitation is lacking. In three microhabitats (gaps, small and large Retama shrubs), we placed six microcosms with sterilized soil, two per soil origin (i.e. from each microhabitat). One in every pair received an alive, and the other a sterile, inoculum from its own soil. Seeds of annual plants were sown into the microcosms. Germination, survival and biomass were monitored. Soil bacterial communities were characterized by pyrosequencing. Germination in living Retama inoculum was nearly double that of germination in sterile inoculum. Germination was greater under Retama canopies than in gaps. Biomass was up to three times higher in nurse than in gap soils. Soil microorganisms, soil properties and microclimate showed a range of positive to negative effects on understory plants depending on species identity and life stage. Nurse soil microorganisms promoted germination, but the effect was smaller than the positive effects of soil properties and microclimate under nurses. Nurse below-ground environment (soil properties and microorganisms) promoted plant growth and survival more than nurse microhabitat. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

  20. LOSS OF ORGANIC CHEMICALS IN SOIL: PURE COMPOUND TREATABILITY STUDIES

    Science.gov (United States)

    Comprehensive screening data on the treatability of 32 organic chemicals in soil were developed. Of the evaluated chemicals, 22 were phenolic compounds. Aerobic batch laboratory microcosm experiments were conducted using two soils: an acidic clay soil with <1% organic matter and ...

  1. Influence of phosphate and copper on reductive dechlorination of thiobencarb in California rice field soils.

    Science.gov (United States)

    Gunasekara, Amrith S; Tenbrook, Patti L; Palumbo, Amanda J; Johnson, Catherine S; Tjeerdema, Ronald S

    2005-12-28

    The potential for reductive dechlorination of the herbicide thiobencarb (TB) by microbes and its prevention in saturated anaerobic rice field soils was examined in laboratory microcosms. TB is effective in controlling both annual grasses and broadleaf weeds. In anoxic microcosms, TB was effectively degraded within 30 days to its dechlorinated product, deschlorothiobencarb (DTB), in two Sacramento Valley rice field soils. TB dechlorination, and subsequent degradation, followed pseudo-zero- (lag phase) and first-order (degradation phase) kinetics. Logistic regression analysis (r2 > 0.841) produced a half-life (t(1/2)) in nonsterile soils ranging from 10 to 15 days, which was also observed when microcosms were amended with low concentrations (copper (Cu2+; as the fungicides Cu(OH)2 and CuSO4.5H2O). High Cu2+ concentrations (>40 mg L(-1)) were added to the microcosms to determine if copper toxicity to dechlorinating microbes is concentration dependent within the range used. After 30 days, the low-copper-amended soils closely resembled the nonsterile experiments to which no Cu2+ was added while the high-copper-amended microcosms were similar to the sterile experiment. Microcosms were also separately amended with 5.7 g L(-1) phosphate (PO4(2-); as KH2PO4), a nutrient regularly applied to rice fields. Phosphate-amended experiments also showed TB degradation, but no DTB formation, indicating the phosphate played a role, possibly as a microbial inhibitor or an alternative electron acceptor, in limiting the dechlorination of TB. In summary, TB dechlorination was inhibited at high Cu(OH)2, CuSO4.5H2O, and KH2PO4 concentrations.

  2. Factors Influencing TCE Anaerobic Dechlorination Investigated via Simulations of Microcosm Experiments

    Science.gov (United States)

    Mao, X.; Harkness, M.; Lee, M. D.; Mack, E. E.; Dworatzek, S.; Acheson, C.; McCarty, P.; Barry, D. A.; Gerhard, J. I.

    2006-12-01

    SABRE (Source Area BioREmediation) is a public-private consortium whose charter is to determine if enhanced anaerobic bioremediation can result in effective and quantifiable treatment of chlorinated solvent DNAPL source areas. The focus of this 4-year, $5.7 million research project is a field site in the United Kingdom containing a TCE DNAPL source area. In preparation, a microcosm study was performed to determine the optimal combination of factors to support reductive dechlorination of TCE in site soil and groundwater. The study consisted of 168 bottles distributed between four laboratories (Dupont, GE, SiREM, and Terra Systems) and tested the impact of six carbon substrates (lactate, acetate, methanol, SRS (soybean oil), hexanol, butyl acetate), bioaugmentation with KB-1 bacterial culture, three TCE levels (100 mg/L, 400 mg/L, and 800 mg/L) and two sulphate levels (200 mg/L, >500 mg/L) on TCE dechlorination. This research presents a numerical model designed to simulate the main processes occurring in the microcosms, including substrate fermentation, sequential dechlorination, toxic inhibition, and the influence of sulphate concentration. In calibrating the model to over 60 of the microcosm experiments, lumped parameters were employed to quantify the effect of key factors on the conversion rate of each chlorinated ethene in the TCE degradation sequence. Results quantify the benefit (i.e., increased stepwise dechlorination rate) due to both bioaugmentation and the presence of higher sulphate concentrations. Competitive inhibition is found to increase in significance as TCE concentrations increase; however, inclusion of Haldane inhibition is not supported. Over a wide range of experimental conditions and dechlorination steps, SRS appears to induce relatively little hydrogen limitation, thereby facilitating relatively quick conversion of TCE to ethene. In general, hydrogen limitation is found to increase with increasing TCE concentration and with bioaugmentation, and

  3. Unusual isotopic composition of C-CO2 from sterilized soil microcosms: a new way to separate intracellular from extracellular respiratory metabolisms.

    Science.gov (United States)

    Kéraval, Benoit; Alvarez, Gaël; Lehours, Anne Catherine; Amblard, Christian; Fontaine, Sebastien

    2015-04-01

    The mineralization of organic C requires two main steps. First, microorganisms secrete exoenzymes in soil in order to depolymerize plant and microbial cell walls and release soluble substrates for microbial assimilation. The second step of mineralization, during which C is released as CO2, implies the absorption and utilization of solubilized substrates by microbial cells with the aim to produce energy (ATP). In cells, soluble substrates are carried out by a cascade of respiratory enzymes, along which protons and electrons are transferred from a substrate to oxygen. Given the complexity of this oxidative metabolism and the typical fragility of respiratory enzymes, it is traditionally considered that respiration (second step of C mineralization process) is strictly an intracellular metabolism process. The recurrent observations of substantial CO2 emissions in soil microcosms where microbial cells have been reduced to extremely low levels challenges this paradigm. In a recent study where some respiratory enzymes have shown to function in an extracellular context in soils, Maire et al. (2013) suggested that an extracellular oxidative metabolism (EXOMET) substantially contributes to CO2 emission from soils. This idea is supported by the recent publication of Blankinship et al., 2014 who showed the presence of active enzymes involved in the Krebs cycle on soil particles. Many controversies subsist in the scientific community due to the presence of non-proliferating but morphologically intact cells after irradiation that could substantially contribute to those soil CO2 emissions. To test whether a purely extracellular oxidative metabolism contribute to soil CO2 emissions, we combined high doses of gamma irradiations to different time of soil autoclaving. The presence of active and non-active cells in soil was checked by DNA and RNA extraction and by electronic microscopy. None active cells (RNA-containing cells) were detectable after irradiation, but some morphological

  4. Ecological effects assessment of anionic surfactant on aquatic ecosystem using microcosm system; Microcosm wo mochiita in ion kaimen kasseizai no suiken seitaikei ni oyobosu eikyo hyoka

    Energy Technology Data Exchange (ETDEWEB)

    Takamatsu, Y. [University of Tsukuba, Tsukuba (Japan); Inamori, Y. [National Institute for Environmental Studies, Tsukuba (Japan); Sudo, R. [Tohoku University, Sendai (Japan). Faculty of Engineering; Kurihara, Y. [Ou Univ., Fukushima (Japan). Faculty of Engineering; Matsumura, M. [University of Tsukuba, Tsukuba (Japan). Institute of Applied Biochemical

    1997-11-10

    Microcosm system was applied to assess effect of anionic surfactant (LAS) on aquatic ecosystem. Anionic surfactant such as LAS was added to an flask microcosm consisting of four species of bacteria as decomposer, one species of ciliate protozoa (Cyclidium glaucoma), two rotifers (Philodina sp. and Lepadella sp.) and one aquatic oligochaete (Aeolosoma hemprichi) as predator, and a green alga (Chlorella sp.) and a filamentous blue-green alga (Tolypothrix sp.) as producer, comparing with that of an natural lake model ecosystem derived from natural lake water. In the flask microcosm system and the natural lake model ecosystem, biodegradation rates of LAS were almost same and NOECs (no observed effect concentration) of LAS were also below 1.5 mg{center_dot} l{sup -1}. It was found that flask microcosm test could provide precise ecological effect assessment of LAS on number of microorganisms because the system showed higher reproducibility and stability than natural take model ecosystem. It was suggested that flask microcosm test was useful ecological effect assessment method which can reflect natural aquatic ecosystem. 10 refs., 4 figs., 2 tabs.

  5. Multidisciplinary assessment of pesticide mitigation in soil amended with vermicomposted agroindustrial wastes

    International Nuclear Information System (INIS)

    Castillo, Jean Manuel; Beguet, Jérèmie; Martin-Laurent, Fabrice; Romero, Esperanza

    2016-01-01

    Highlights: • The genetic structure of soil bacterial community was transiently affected by diuron. • Soil amended with vermicompost regulated diuron persistence in soil. • puhB abundance increased after bacterial-community pre-exposure to diuron. • O-Vermicompost mitigated diuron fate by improving microbial activity. - Abstract: Soil organic amendment affects biotic and abiotic processes that control the fate of pesticides, but the treatment history of the soil is also relevant. These processes were assessed in a multidisciplinary study with the aim of optimizing pesticide mitigation in soils. Soil microcosms pre-treated (E2) or not with diuron (E1) were amended with either winery (W) or olive waste (O) vermicomposts. Herbicide dissipation followed a double first-order model in E1 microcosms, but a single first-order model in E2. Also, diuron persistence was longer in E1 than in E2 (E1-DT_5_0 > 200 day"−"1, E2-DT_5_0 < 16 day"−"1). The genetic structure of the bacterial community was modified by both diuron exposure and amendment. O-vermicompost increased enzymatic activities in both experiments, but diuron-degrading genetic potential (puhB) was quantified only in E2 microcosms in accordance with reduced diuron persistence. Therefore, O-vermicompost addition favoured the proliferation of diuron degraders, increasing the soil diuron-depuration capability.

  6. Multidisciplinary assessment of pesticide mitigation in soil amended with vermicomposted agroindustrial wastes

    Energy Technology Data Exchange (ETDEWEB)

    Castillo, Jean Manuel, E-mail: jeanmanuel.castillo04@gmail.com [Department of Environmental Protection, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Cientificas (EEZ-CSIC), C/Profesor Albareda 1, 18008 Granada (Spain); Beguet, Jérèmie; Martin-Laurent, Fabrice [French National Institute for Agricultural Research—INRA, UMR 1347 Agroécologie, 17 rue Sully, B P 86510, 21065 Dijon Cedex (France); Romero, Esperanza [Department of Environmental Protection, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Cientificas (EEZ-CSIC), C/Profesor Albareda 1, 18008 Granada (Spain)

    2016-03-05

    Highlights: • The genetic structure of soil bacterial community was transiently affected by diuron. • Soil amended with vermicompost regulated diuron persistence in soil. • puhB abundance increased after bacterial-community pre-exposure to diuron. • O-Vermicompost mitigated diuron fate by improving microbial activity. - Abstract: Soil organic amendment affects biotic and abiotic processes that control the fate of pesticides, but the treatment history of the soil is also relevant. These processes were assessed in a multidisciplinary study with the aim of optimizing pesticide mitigation in soils. Soil microcosms pre-treated (E2) or not with diuron (E1) were amended with either winery (W) or olive waste (O) vermicomposts. Herbicide dissipation followed a double first-order model in E1 microcosms, but a single first-order model in E2. Also, diuron persistence was longer in E1 than in E2 (E1-DT{sub 50} > 200 day{sup −1}, E2-DT{sub 50} < 16 day{sup −1}). The genetic structure of the bacterial community was modified by both diuron exposure and amendment. O-vermicompost increased enzymatic activities in both experiments, but diuron-degrading genetic potential (puhB) was quantified only in E2 microcosms in accordance with reduced diuron persistence. Therefore, O-vermicompost addition favoured the proliferation of diuron degraders, increasing the soil diuron-depuration capability.

  7. Iron released from ilmenite mineral sustains a phytoplankton community in microcosms

    Digital Repository Service at National Institute of Oceanography (India)

    Fernandes, C.E.G.; Velip, D.; Mourya, B.S.; Shaikh, S.; Das, A.; LokaBharathi, P.A.

    Natural biotic communities from Kalbadevi Bay were monitored in microcosms (1-l glass flasks) to test the hypothesis that iron released from ilmenite through microbial action contributes to proliferation of phytoplankton. Microcosms containing...

  8. Come and play with HEAL in Microcosm!

    CERN Multimedia

    Stefania Pandolfi

    2016-01-01

    A new interactive game in Microcosm informs about hadron therapy – come and test it!   HEAL is a new interactive game currently under evaluation at Microcosm to inform visitors about hadron therapy, one aspect of the CERN-related contributions to the medical field. Microcosm is continuously evolving and new content is installed regularly. One of the most recent exhibits is called HEAL - an interactive game with the aim of informing visitors about the hadron therapy to treat cancer. It has been developed by Jenny Rompa, a PhD student at CERN, within the activities of MediaLab.  The application is controlled through body movements and the player is asked to set the right energy and the right angle of the hadron beam to make the (brain) cancer disappear. As part of her doctoral thesis, Jenny also built a questionnaire to hand out to visitors in order to examine their user experience. The goal of the study is to evaluate the effectiveness of using inter...

  9. Decreases in soil microbial function and functional diversity in response to depleted uranium

    International Nuclear Information System (INIS)

    Meyer, M.C.; Paschke, M.W.; McLendon, T.

    1998-01-01

    A soil microcosm experiment was used to analyze effects of depleted uranium (DU) on soil function, and the concomitant changes in bacterial functional diversity. Uranium treatment levels were 0, 50, 500, 5000, 10,000 and 25,000 mg DU kg -1 soil. Three measures of soil function were made. Overall soil biological activity was assessed via measurement of soil respiration. Decomposition was assessed by measurement of mass loss of four different plant litter types: wood sticks, cellulose paper, high-N grass, and low-N grass. Mineral N availability in the microcosms was estimated using ion-exchange resin bags. Functional diversity of the microcosms was analyzed through the use of the Biolog-system of sole-C-utilization patterns. Soil respiration was the most sensitive measure of functional changes, with significant decreases observed starting at the 500 mg kg -1 treatment. No differences in N availability were observed across the U treatments. Litter decomposition was significantly decreased at the 25,000 mg kg -1 level relative to the control for all litter types except the high-N grass. Wood decomposition was reduced by 84% at the 25,000 mg kg - treatment, cellulose paper by 68%, and low-N grass by 15%. Decreases in the functional diversity of the bacterial community were related to the observed decrease in soil respiration, and to the greater effect on decomposition of the lower-quality litter types

  10. Phytoremediation of Polycyclic Aromatic Hydrocarbons in Soils Artificially Polluted Using Plant-Associated-Endophytic Bacteria and Dactylis glomerata as the Bioremediation Plant.

    Science.gov (United States)

    Gałązka, Ann; Gałązka, Rafał

    2015-01-01

    The reaction of soil microorganisms to the contamination of soil artificially polluted with polycyclic aromatic hydrocarbons (PAHs) was evaluated in pot experiments. The plant used in the tests was cock's foot (Dactylis glomerata). Three different soils artificially contaminated with PAHs were applied in the studies. Three selected PAHs (anthracene, phenanthrene, and pyrene) were used at the doses of 100, 500, and 1000 mg/kg d.m. of soil and diesel fuel at the doses of 100, 500, and 1000 mg/kg d.m. of soil. For evaluation of the synergistic effect of nitrogen fixing bacteria, the following strains were selected: associative Azospirillum spp. and Pseudomonas stutzerii. Additionally, in the bioremediation process, the inoculation of plants with a mixture of the bacterial strains in the amount of 1 ml suspension per 500 g of soil was used. Chamber pot-tests were carried out in controlled conditions during four weeks of plant growth period. The basic physical, microbiological and biochemical properties in contaminated soils were determined. The obtained results showed a statistically important increase in the physical properties of soils polluted with PAHs and diesel fuel compared with the control and also an important decrease in the content of PAHs and heavy metals in soils inoculated with Azospirillum spp. and P. stutzeri after cock's foot grass growth. The bioremediation processes were especially intensive in calcareous rendzina soil artificially polluted with PAHs.

  11. Application of a series of artificial neural networks to on-site quantitative analysis of lead into real soil samples by laser induced breakdown spectroscopy

    International Nuclear Information System (INIS)

    El Haddad, J.; Bruyère, D.; Ismaël, A.; Gallou, G.; Laperche, V.; Michel, K.; Canioni, L.; Bousquet, B.

    2014-01-01

    Artificial neural networks were applied to process data from on-site LIBS analysis of soil samples. A first artificial neural network allowed retrieving the relative amounts of silicate, calcareous and ores matrices into soils. As a consequence, each soil sample was correctly located inside the ternary diagram characterized by these three matrices, as verified by ICP-AES. Then a series of artificial neural networks were applied to quantify lead into soil samples. More precisely, two models were designed for classification purpose according to both the type of matrix and the range of lead concentrations. Then, three quantitative models were locally applied to three data subsets. This complete approach allowed reaching a relative error of prediction close to 20%, considered as satisfying in the case of on-site analysis. - Highlights: • Application of a series of artificial neural networks (ANN) to quantitative LIBS • Matrix-based classification of the soil samples by ANN • Concentration-based classification of the soil samples by ANN • Series of quantitative ANN models dedicated to the analysis of data subsets • Relative error of prediction lower than 20% for LIBS analysis of soil samples

  12. Use of Soil Moisture Variability in Artificial Neural Network Retrieval of Soil Moisture

    Directory of Open Access Journals (Sweden)

    Bert Veenendaal

    2009-12-01

    Full Text Available Passive microwave remote sensing is one of the most promising techniques for soil moisture retrieval. However, the inversion of soil moisture from brightness temperature observations is not straightforward, as it is influenced by numerous factors such as surface roughness, vegetation cover, and soil texture. Moreover, the relationship between brightness temperature, soil moisture and the factors mentioned above is highly non-linear and ill-posed. Consequently, Artificial Neural Networks (ANNs have been used to retrieve soil moisture from microwave data, but with limited success when dealing with data different to that from the training period. In this study, an ANN is tested for its ability to predict soil moisture at 1 km resolution on different dates following training at the same site for a specific date. A novel approach that utilizes information on the variability of soil moisture, in terms of its mean and standard deviation for a (sub region of spatial dimension up to 40 km, is used to improve the current retrieval accuracy of the ANN method. A comparison between the ANN with and without the use of the variability information showed that this enhancement enables the ANN to achieve an average Root Mean Square Error (RMSE of around 5.1% v/v when using the variability information, as compared to around 7.5% v/v without it. The accuracy of the soil moisture retrieval was further improved by the division of the target site into smaller regions down to 4 km in size, with the spatial variability of soil moisture calculated from within the smaller region used in the ANN. With the combination of an ANN architecture of a single hidden layer of 20 neurons and the dual-polarized brightness temperatures as input, the proposed use of variability and sub-region methodology achieves an average retrieval accuracy of 3.7% v/v. Although this accuracy is not the lowest as comparing to the research in this field, the main contribution is the ability of ANN in

  13. Development of methods for remediation of artificial polluted soils and improvement of soils for ecologically clean agricultural production systems

    International Nuclear Information System (INIS)

    Bogachev, V.; Adrianova, G.; Zaitzev, V.; Kalinin, V.; Kovalenko, E.; Makeev, A.; Malikova, L.; Popov, Yu.; Savenkov, A.; Shnyakina, V.

    1996-01-01

    The purpose of the research: Development of methods for the remediation of artificial polluted soils and the improvement of polluted lands to ecologically clean agricultural production.The following tasks will be implemented in this project to achieve viable practical solutions: - To determine the priority pollutants, their ecological pathways, and sources of origin. - To form a supervised environmental monitoring data bank throughout the various geo system conditions. - To evaluate the degree of the bio geo system pollution and the influence on the health of the local human populations. - To establish agricultural plant tolerance levels to the priority pollutants. - To calculate the standard concentrations of the priority pollutants for main agricultural plant groups. - To develop a soil remediation methodology incorporating the structural, functional geo system features. - To establish a territory zone division methodology in consideration of the degree of component pollution, plant tolerance to pollutants, plant production conditions, and human health. - Scientific grounding of the soil remediation proposals and agricultural plant material introductions with soil pollution levels and relative plant tolerances to pollutants. Technological Means, Methods, and Approaches Final proposed solutions will be based upon geo system and ecosystem approaches and methodologies. The complex ecological valuation methods of the polluted territories will be used in this investigation. Also, laboratory culture in vitro, application work, and multi-factor field experiments will be conducted. The results will be statistically analyzed using appropriate methods. Expected Results Complex biogeochemical artificial province assessment according to primary pollutant concentrations. Development of agricultural plant tolerance levels relative to the priority pollutants. Assessment of newly introduced plant materials that may possess variable levels of pollution tolerance. Remediation

  14. Influence of different types of nanomaterials on their bioaccumulation in a paddy microcosm: A comparison of TiO2 nanoparticles and nanotubes

    International Nuclear Information System (INIS)

    Yeo, Min-Kyeong; Nam, Dong-Ha

    2013-01-01

    We investigated the environmental fate and bioaccumulation of TiO 2 nanomaterials in a simplified paddy microcosm over a period of 17 days. Two types of TiO 2 nanomaterials, nanoparticles (TiO 2 -NP) and nanotubes (TiO 2 -NT), were synthesized to have a negative surface charge. Ti concentrations in the environmental media (water, soil), crops (quillworts, water dropworts), and some lower and higher trophic organisms (biofilms, algae, plant-parasitic nematodes, white butterfly larva, mud snail, ricefish) were quantified after exposure periods of 0, 7, and 17 days. The titanium levels of the two nanomaterials were the highest in biofilms during the exposure periods. Bioaccumulation factors indicated that TiO 2 -NP and TiO 2 -NT were largely transferred from a prey (e.g., biofilm, water dropwort) to its consumer (e.g., nematodes, mud snail). Considering the potential entries of such TiO 2 nanomaterials in organisms, their bioaccumulation throughout the food chain should be regarded with great concern in terms of the overall health of the ecosystem. -- Highlights: •A high amount of nanomaterial was transferred within low trophic level organisms. •Nanomaterial transfer occurred from water dropwort roots to nematodes and snails. •Nanomaterial transfer occurred from the biofilm-consuming plankton to ricefish. •TiO 2 nanomaterials can accumulate in the organisms of an artificial ecosystem. -- TiO 2 nanomaterials can accumulate in the organisms of an artificial ecosystem

  15. Differentiate responses of soil structure to natural vegetation and artificial plantation in landslide hazard region of the West Qinling Mountains, China

    Science.gov (United States)

    Wang, X.; Huang, Z.; Zhao, Y.; Hong, M.

    2017-12-01

    Natural vegetation and artificial plantation are the most important measures for ecological restoration in soil erosion and landslide hazard-prone regions of China. Previous studies have demonstrated that both measures can significantly change the soil structure and decrease soil and water erosion. Few reports have compared the effects of the two contrasting measures on mechanical and hydrological properties and further tested the differentiate responses of soil structure. In the study areas, two vegetation restoration measures-natural vegetation restoration (NVR) and artificial plantation restoration (APR) compared with control site, with similar topographical and geological backgrounds were selected to investigate the different effects on soil structure based on eight-year ecological restoration projects. The results showed that the surface vegetation played an important role in releasing soil erosion and enhance soil structure stability through change the soil aggregates (SA) and total soil porosity (TSP). The SArestoration and conservation in geological hazard-prone regions.

  16. Metal oxides, clay minerals and charcoal determine the composition of microbial communities in matured artificial soils and their response to phenanthrene.

    Science.gov (United States)

    Babin, Doreen; Ding, Guo-Chun; Pronk, Geertje Johanna; Heister, Katja; Kögel-Knabner, Ingrid; Smalla, Kornelia

    2013-10-01

    Microbial communities in soil reside in a highly heterogeneous habitat where diverse mineral surfaces, complex organic matter and microorganisms interact with each other. This study aimed to elucidate the long-term effect of the soil mineral composition and charcoal on the microbial community composition established in matured artificial soils and their response to phenanthrene. One year after adding sterile manure to different artificial soils and inoculating microorganisms from a Cambisol, the matured soils were spiked with phenanthrene or not and incubated for another 70 days. 16S rRNA gene and internal transcribed spacer fragments amplified from total community DNA were analyzed by denaturing gradient gel electrophoresis. Metal oxides and clay minerals and to a lesser extent charcoal influenced the microbial community composition. Changes in the bacterial community composition in response to phenanthrene differed depending on the mineral composition and presence of charcoal, while no shifts in the fungal community composition were observed. The abundance of ring-hydroxylating dioxygenase genes was increased in phenanthrene-spiked soils except for charcoal-containing soils. Here we show that the formation of biogeochemical interfaces in soil is an ongoing process and that different properties present in artificial soils influenced the bacterial response to the phenanthrene spike. © 2012 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

  17. Effect of Flooding and the nosZ Gene in Bradyrhizobia on Bradyrhizobial Community Structure in the Soil.

    Science.gov (United States)

    Saeki, Yuichi; Nakamura, Misato; Mason, Maria Luisa T; Yano, Tsubasa; Shiro, Sokichi; Sameshima-Saito, Reiko; Itakura, Manabu; Minamisawa, Kiwamu; Yamamoto, Akihiro

    2017-06-24

    We investigated the effects of the water status (flooded or non-flooded) and presence of the nosZ gene in bradyrhizobia on the bradyrhizobial community structure in a factorial experiment that examined three temperature levels (20°C, 25°C, and 30°C) and two soil types (andosol and gray lowland soil) using microcosm incubations. All microcosms were inoculated with Bradyrhizobium japonicum USDA6 T , B. japonicum USDA123, and B. elkanii USDA76 T , which do not possess the nosZ gene, and then half received B. diazoefficiens USDA110 T wt (wt for the wild-type) and the other half received B. diazoefficiens USDA110ΔnosZ. USDA110 T wt possesses the nosZ gene, which encodes N 2 O reductase; 110ΔnosZ, a mutant variant, does not. Changes in the community structure after 30- and 60-d incubations were investigated by denaturing-gradient gel electrophoresis and an image analysis. USDA6 T and 76 T strains slightly increased in non-flooded soil regardless of which USDA110 T strain was present. In flooded microcosms with the USDA110 T wt strain, USDA110 T wt became dominant, whereas in microcosms with the USDA110ΔnosZ, a similar change in the community structure occurred to that in non-flooded microcosms. These results suggest that possession of the nosZ gene confers a competitive advantage to B. diazoefficiens USDA110 T in flooded soil. We herein demonstrated that the dominance of B. diazoefficiens USDA110 T wt within the soil bradyrhizobial population may be enhanced by periods of flooding or waterlogging systems such as paddy-soybean rotations because it appears to have the ability to thrive in moderately anaerobic soil.

  18. Impact of municipal wastewater effluent on seed bank response and soils excavated from a wetland impoundment

    Science.gov (United States)

    Finocchiaro, R.G.; Kremer, R.J.; Fredrickson, L.H.

    2009-01-01

    Intensive management of wetlands to improve wildlife habitat typically includes the manipulation of water depth, duration, and timing to promote desired vegetation communities. Increased societal, industrial, and agricultural demands for water may encourage the use of alternative sources such as wastewater effluents in managed wetlands. However, water quality is commonly overlooked as an influence on wetland soil seed banks and soils. In four separate greenhouse trials conducted over a 2-yr period, we examined the effects of municipal wastewater effluent (WWE) on vegetation of wetland seed banks and soils excavated from a wildlife management area in Missouri, USA. We used microcosms filled with one of two soil materials and irrigated with WWE, Missouri River water, or deionized water to simulate moist-soil conditions. Vegetation that germinated from the soil seed bank was allowed to grow in microcosms for approximately 100 d. Vegetative taxa richness, plant density, and biomass were significantly reduced in WWE-irrigated soil materials compared with other water sources. Salinity and sodicity rapidly increased in WWE-irrigated microcosms and probably was responsible for inhibiting germination or interfering with seedling development. Our results indicate that irrigation with WWE promoted saline-sodic soil conditions, which alters the vegetation community by inhibiting germination or seedling development. ?? 2009, The Society of Wetland Scientists.

  19. Investigations of the sorption characteristics of radiosilver on some natural and artificial soil particles

    Energy Technology Data Exchange (ETDEWEB)

    Szabo, Gyula; Guczi, Judit [`FJC` National Research Institute for Radiobiology and Radiohygiene, Budapest (Hungary); Valyon, Jozef [Central Research Institute for Chemistry, Hungarian Academy of Sciences, Budapest (Hungary); Bulman, Robert A. [National Radiological Protection Board, Chilton Didcot, England (United Kingdom)

    1995-09-05

    The likely distribution of {sup 110m}Ag(I), a radionuclide that may be produced in nuclear power stations and which has been known to contaminate the environment, between the components of particles of soil has been investigated by measuring its uptake from solutions of sodium nitrate, sodium EDTA and sodium citrate onto particles of chernozem soil and particles formed to simulate soils. The artificial soil particles were formed from: (1) silicas coated with manganese oxide, ferric oxide and hydrated ferric oxide, (2) silicas bearing chemically bound humic and fulvic acids and (3) alumina bearing anionically associated humic acid. These investigations have established that uptake of {sup 110m}Ag(I) by the humate coatings of soil particles will predominate under a wide range of pH. In the absence of humate coatings on the soil particles the radionuclide will be bound by the Fe/Mn oxide fractions of soils.

  20. Investigations of the sorption characteristics of radiosilver on some natural and artificial soil particles

    International Nuclear Information System (INIS)

    Szabo, Gyula; Guczi, Judit; Valyon, Jozef; Bulman, Robert A.

    1995-01-01

    The likely distribution of 110m Ag(I), a radionuclide that may be produced in nuclear power stations and which has been known to contaminate the environment, between the components of particles of soil has been investigated by measuring its uptake from solutions of sodium nitrate, sodium EDTA and sodium citrate onto particles of chernozem soil and particles formed to simulate soils. The artificial soil particles were formed from: (1) silicas coated with manganese oxide, ferric oxide and hydrated ferric oxide, (2) silicas bearing chemically bound humic and fulvic acids and (3) alumina bearing anionically associated humic acid. These investigations have established that uptake of 110m Ag(I) by the humate coatings of soil particles will predominate under a wide range of pH. In the absence of humate coatings on the soil particles the radionuclide will be bound by the Fe/Mn oxide fractions of soils

  1. Comparison between artificial neural networks and maximum likelihood classification in digital soil mapping

    Directory of Open Access Journals (Sweden)

    César da Silva Chagas

    2013-04-01

    Full Text Available Soil surveys are the main source of spatial information on soils and have a range of different applications, mainly in agriculture. The continuity of this activity has however been severely compromised, mainly due to a lack of governmental funding. The purpose of this study was to evaluate the feasibility of two different classifiers (artificial neural networks and a maximum likelihood algorithm in the prediction of soil classes in the northwest of the state of Rio de Janeiro. Terrain attributes such as elevation, slope, aspect, plan curvature and compound topographic index (CTI and indices of clay minerals, iron oxide and Normalized Difference Vegetation Index (NDVI, derived from Landsat 7 ETM+ sensor imagery, were used as discriminating variables. The two classifiers were trained and validated for each soil class using 300 and 150 samples respectively, representing the characteristics of these classes in terms of the discriminating variables. According to the statistical tests, the accuracy of the classifier based on artificial neural networks (ANNs was greater than of the classic Maximum Likelihood Classifier (MLC. Comparing the results with 126 points of reference showed that the resulting ANN map (73.81 % was superior to the MLC map (57.94 %. The main errors when using the two classifiers were caused by: a the geological heterogeneity of the area coupled with problems related to the geological map; b the depth of lithic contact and/or rock exposure, and c problems with the environmental correlation model used due to the polygenetic nature of the soils. This study confirms that the use of terrain attributes together with remote sensing data by an ANN approach can be a tool to facilitate soil mapping in Brazil, primarily due to the availability of low-cost remote sensing data and the ease by which terrain attributes can be obtained.

  2. Microbial activity in Alaskan taiga soils contaminated by crude oil in 1976

    International Nuclear Information System (INIS)

    Monroe, E.M.; Lindstrom, J.E.; Brown, E.J.; Raddock, J.F.

    1995-01-01

    Biodegradation, often measured via microbial activity, includes destruction of environmental pollutants by living microorganisms and is dependent upon many physical and chemical factors. Effects of mineral nutrients and organic matter on biodegradation of Prudhoe Bay crude oil were investigated at a nineteen-year-old oil spill site in Alaskan taiga. Microcosms of two different soil types from the spill site; one undeveloped soil with forest litter and detritus (O horizon) and one more developed with lower organic content (A horizon), were treated with various nitrogen and phosphorus amendments, and incubated for up to six weeks. Each microcosm was sampled periodically and assayed for hydrocarbon mineralization potential using radiorespirometry, for total carbon dioxide respired using gas chromatography, and for numbers of hydrocarbon-degrading bacteria and heterotrophic bacteria using most probable number counting techniques. Organic matter in the O horizon soil along with combinations of mineral nutrients were found to stimulate microbial activity. No combination of mineral nutrient additions to the A horizon soil stimulated any of the parameters above those measured in control microcosms. The results of this study indicate that adding mineral nutrients and tilling the O horizon into the A horizon of subarctic soils contaminated with crude oil, would stimulate microbial activity, and therefore the biodegradation potential, ultimately increasing the rate of destruction of crude oil in these soils

  3. Impact of future climatic conditions on the potential for soil organic matter priming

    DEFF Research Database (Denmark)

    Reinsch, Sabine; Ambus, Per; Thornton, Barry

    2013-01-01

    Terrestrial carbon (C) storage and turnover are of major interest under changing climatic conditions. We present a laboratory microcosm study investigating the effects of anticipated climatic conditions on the soil microbial community and related changes in soil organic matter (SOM) decomposition....... Soil samples were taken from a heath-land after six years of exposure to elevated carbon dioxide (eCO2) in combination with summer drought (D) and increased temperature (T). Soil C-dynamics were investigated in soils from: (i) ambient, (ii) eCO2, and (iii) plots exposed to the combination of factors...... simulating future climatic conditions (TDeCO2) that simulate conditions predicted for Denmark in 2075. 13C enriched glucose (3 atom% excess) was added to soil microcosms, soil CO2 efflux was measured over a period of two weeks and separated into glucose- and SOM-derived C. Microbial biomass was measured...

  4. Natural and artificial radionuclides in forest and bog soils: tracers for migration processes and soil development

    International Nuclear Information System (INIS)

    Schleich, N.; Degering, D.; Unterricker, S.

    2000-01-01

    Radionuclide distributions in undisturbed forest and bog soils, mostly situated in Saxony, Germany (Erzgebirge), were studied. Low concentrations of naturally-occurring U and Th decay series nuclides, including 210 Pb, and artificial radioisotopes ( 125 Sb, 134 Cs, 137 Cs, 241 Am) were determined using low-level γ-spectrometry. In addition, the activities of 238 Pu and 239,240 Pu were determined by radiochemical separation and α-spectrometry. 14 C and excess 210 Pb dating methods were used to date the sampled bog profiles. The different radionuclides show characteristic depth distributions in the forest and bog soil horizons, which were sub-sampled as thin slices. 125 Sb, 241 Am, 238 Pu and 239,240 Pu are strongly fixed in soil organic matter. In spruce forest soils, the influence of soil horizons with distinct properties dominates the vertical time-dependent distribution. In ombrotrophic bogs, the peak positions correlated with the year of maximum input of each nuclide. The Sb, Am and Pu ''time markers'' and the 14 C and 210 Pb dating results correspond very well. Although Cs seems to be relatively mobile in organic as well as mineral forest soil horizons, it is enriched in the organic material. In ombrotrophic bogs, Cs is very mobile in the peat deposit. In Sphagnum peat, Cs is translocated continuously towards the growing apices of the Sphagnum mosses, where it is accumulated. (orig.)

  5. Assessment of Summe Savory (satureja hortensis L. Biomass by Easily-Attainable Soil Parameters and Artificial Network

    Directory of Open Access Journals (Sweden)

    hossein sabourifard

    2018-02-01

    Full Text Available Introduction: One of the most important requirements in planning production and processing of medicinal plants in order to obtain high yield and high-quality is the initial assessment of the physical and chemical properties of soil, which reduces the production cost by avoiding the use of unnecessary soil analysis. Summer savory (Satureja hortensis L. is one the most widely used medicinal plants that quality index of plant is related to the quantity and the constituent of its essential oil content. Understanding the relations between the quantity and quality of medicinal plants with the very physical and chemical properties of soil is very complex and the estimation of parameters changes of medicinal plants affect by soil quality characteristics is more difficult. Today, with the arrival of multivariable regression models and artificial lattice models in the research, many complex relationships found in nature is understandable. Hence the need for estimation the biomass yield of savory using fast, cheap and with acceptable accuracy is feeling. Materials and Methods: The present study was performed at the Agricultural Research Station Neyshabur as pot experiment based on a completely randomized design with three replications. Around 53 soil samples were collected from different parts of Neyshabur city, and soil texture, organic matter, pH, salinity, phosphorus, potassium, nitrogen and carbon content were selected as the easily available parameters. Before planting the parameters were measured in laboratory. Approximately 90 days after planting seeds in pots containing soil samples, the sampling of plants was done based on the treatments. For drying, samples were placed for 24 hours in an oven at 40 °C. Finally, the relationship between the biomass yield and easily available soil parameters was determined using artificial neural network by Matlab7.9 software. Results and Discussion: The results showed that soil variability, is a key element in

  6. Dissolved organic nitrogen (DON) losses from nested artificially drained lowland catchments with contrasting soil types

    Science.gov (United States)

    Tiemeyer, Bärbel; Kahle, Petra; Lennartz, Bernd

    2010-05-01

    Artificial drainage is a common practice to improve moisture and aeration conditions of agricultural land. It shortens the residence time of water in the soil and may therefore contribute to the degradation of peatlands as well as to the still elevated level of diffuse pollution of surface water bodies, particularly if flow anomalies like preferential flow cause a further acceleration of water and solute fluxes. Especially in the case of nitrate, artificially drained sub-catchments are found to control the catchment-scale nitrate losses. However, it is frequently found that nitrate losses and nitrogen field balances do not match. At the same time, organic fertilizers are commonly applied and, especially in lowland catchments, organic soils have been drained for agricultural use. Thus, the question arises whether dissolved organic nitrogen (DON) forms an important component of the nitrogen losses from artificially drained catchments. However, in contrast to nitrate and even to dissolved organic carbon (DOC), this component is frequently overlooked, especially in nested catchment studies with different soil types and variable land use. Here, we will present data from a hierarchical water quantity and quality measurement programme in the federal state Mecklenburg-Vorpommern (North-Eastern Germany). The monitoring programme in the pleistocene lowland catchment comprises automatic sampling stations at a collector drain outlet (4.2 ha catchment), at a ditch draining arable land on mineral soils (179 ha), at a ditch mainly draining grassland on organic soils (85 ha) and at a brook with a small rural catchment (15.5 km²) of mixed land use and soil types. At all sampling stations, daily to weekly composite samples were taken, while the discharge and the meteorological data were recorded continuously. Water samples were analyzed for nitrate-nitrogen, ammonium-nitrogen and total nitrogen. We will compare two years: 2006/07 was a very wet year (P = 934 mm) with a high summer

  7. Photowalk Exhibition opens at Microcosm

    CERN Document Server

    Katarina Anthony

    2011-01-01

    The winning photographs from the 2010 Global Particle Physics Photowalk competition will go on display at Microcosm from 11 February to 2 April. The exhibition is part of a global photography event taking place over three continents, with Photowalk exhibitions opening simultaneously at Fermilab in the US, KEK in Japan and here at CERN.   DESY wire chamber - First place people's choice; second place global jury competition. Photographer: Hans-Peter Hildebrandt  If you were one of the 1,300 photography lovers who voted in last year’s Photowalk competition, this exhibition is your chance to see the winning entries in print. The exhibition will take place in the downstairs gallery of Microcosm, overlooking the garden. 15 photographs will be on display, with each of the laboratories that participated in Photowalk represented by their 3 winning entries. Among them will be the “people’s choice” sunburst photo of a particle detector at DESY (Photo 1), and...

  8. Towards sustainability: artificial intelligent based approach for soil stabilization using various pozzolans

    KAUST Repository

    Ouf, M. S.

    2012-07-03

    Due to the gradual depletion in the conventional resources, searching for a more rational road construction approach aimed at reducing the dependence on imported materials while improving the quality and durability of the roads is necessary. A previous study carried out on a sample of Egyptian soil aimed at reducing the road construction cost, protect the environment and achieving sustainability. RoadCem, ground granulated blast furnace slag (GGBS), lime and ordinary Portland cement (OPC) were employed to stabilise the Egyptian clayey soil. The results revealed that the unconfined compressive strength (UCS) of the test soil increased while the free swelling percent (FSP) decreased with an increase in the total stabiliser and the curing period. This paper discusses attempts to reach optimum stabilization through: (1) Recognizing the relationship between the UCS/FSP of stabilized soil and the stabilization parameters using artificial neural network (ANN); and (2) Performing a backward optimization on the developed (ANN) model using general algorithm (GA) to meet practical design preferences. © 2012 WIT Press.

  9. Using Reflectance Spectroscopy and Artificial Neural Network to Assess Water Infiltration Rate into the Soil Profile

    Directory of Open Access Journals (Sweden)

    Naftali Goldshleger

    2012-01-01

    Full Text Available We explored the effect of raindrop energy on both water infiltration into soil and the soil's NIR-SWIR spectral reflectance (1200–2400 nm. Seven soils with different physical and morphological properties from Israel and the US were subjected to an artificial rainstorm. The spectral properties of the crust formed on the soil surface were analyzed using an artificial neural network (ANN. Results were compared to a study with the same population in which partial least-squares (PLS regression was applied. It was concluded that both models (PLS regression and ANN are generic as they are based on properties that correlate with the physical crust, such as clay content, water content and organic matter. Nonetheless, better results for the connection between infiltration rate and spectral properties were achieved with the non-linear ANN technique in terms of statistical values (RMSE of 17.3% for PLS regression and 10% for ANN. Furthermore, although both models were run at the selected wavelengths and their accuracy was assessed with an independent external group of samples, no pre-processing procedure was applied to the reflectance data when using ANN. As the relationship between infiltration rate and soil reflectance is not linear, ANN methods have the advantage for examining this relationship when many soils are being analyzed.

  10. Insights into the biodegradation of weathered hydrocarbons in contaminated soils by bioaugmentation and nutrient stimulation.

    Science.gov (United States)

    Jiang, Ying; Brassington, Kirsty J; Prpich, George; Paton, Graeme I; Semple, Kirk T; Pollard, Simon J T; Coulon, Frédéric

    2016-10-01

    The potential for biotransformation of weathered hydrocarbon residues in soils collected from two commercial oil refinery sites (Soil A and B) was studied in microcosm experiments. Soil A has previously been subjected to on-site bioremediation and it was believed that no further degradation was possible while soil B has not been subjected to any treatment. A number of amendment strategies including bioaugmentation with hydrocarbon degrader, biostimulation with nutrients and soil grinding, were applied to the microcosms as putative biodegradation improvement strategies. The hydrocarbon concentrations in each amendment group were monitored throughout 112 days incubation. Microcosms treated with biostimulation (BS) and biostimulation/bioaugmentation (BS + BA) showed the most significant reductions in the aliphatic and aromatic hydrocarbon fractions. However, soil grinding was shown to reduce the effectiveness of a nutrient treatment on the extent of biotransformation by up to 25% and 20% for the aliphatic and aromatic hydrocarbon fractions, respectively. This is likely due to the disruption to the indigenous microbial community in the soil caused by grinding. Further, ecotoxicological responses (mustard seed germination and Microtox assays) showed that a reduction of total petroleum hydrocarbon (TPH) concentration in soil was not directly correlable to reduction in toxicity; thus monitoring TPH alone is not sufficient for assessing the environmental risk of a contaminated site after remediation. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

  11. Prediction of compressibility parameters of the soils using artificial neural network.

    Science.gov (United States)

    Kurnaz, T Fikret; Dagdeviren, Ugur; Yildiz, Murat; Ozkan, Ozhan

    2016-01-01

    The compression index and recompression index are one of the important compressibility parameters to determine the settlement calculation for fine-grained soil layers. These parameters can be determined by carrying out laboratory oedometer test on undisturbed samples; however, the test is quite time-consuming and expensive. Therefore, many empirical formulas based on regression analysis have been presented to estimate the compressibility parameters using soil index properties. In this paper, an artificial neural network (ANN) model is suggested for prediction of compressibility parameters from basic soil properties. For this purpose, the input parameters are selected as the natural water content, initial void ratio, liquid limit and plasticity index. In this model, two output parameters, including compression index and recompression index, are predicted in a combined network structure. As the result of the study, proposed ANN model is successful for the prediction of the compression index, however the predicted recompression index values are not satisfying compared to the compression index.

  12. Effects of sulfamethoxazole on soil microbial communities after adding substrate.

    NARCIS (Netherlands)

    Demoling, L.A.; Baath, E.; Greve, G.D.; Wouterse, M.; Schmitt, H.

    2009-01-01

    The effect of the antibiotic sulfamethoxazole (SMX) on soil bacteria was studied using two methods (leucine incorporation and Biolog plates) of estimating pollution-induced community tolerance (PICT). SMX was added to an agricultural soil in a microcosm setup. The addition of different substrates

  13. Degradation of ¹³C-labeled pyrene in soil-compost mixtures and fertilized soil.

    Science.gov (United States)

    Adam, Iris K U; Miltner, Anja; Kästner, Matthias

    2015-11-01

    Polycyclic aromatic hydrocarbons (PAH) are toxic pollutants widely distributed in the environment due to natural and anthropogenic processes. In order to mitigate tar oil contaminations with PAH, research on improving bioremediation approaches, which are sometimes inefficient, is needed. However, the knowledge on the fate of PAH-derived carbon and the microbial degraders in particular in compost-supplemented soils is still limited. Here we show the PAH carbon turnover mass balance in microcosms with soil-compost mixtures or in farmyard fertilized soil using [(13)C6]-pyrene as a model PAH. Complete pyrene degradation of 100 mg/kg of soil was observed in all supplemented microcosms within 3 to 5 months, and the residual (13)C was mainly found as carbon converted to microbial biomass. Long-term fertilization of soil with farmyard manure resulted in pyrene removal efficiency similar to compost addition, although with a much longer lag phase, higher mineralization, and lower carbon incorporation into the biomass. Organic amendments either as long-term manure fertilization or as compost amendment thus play a key role in increasing the PAH-degrading potential of the soil microbial community. Phospholipid fatty acid stable isotope probing (PLFA-SIP) was used to trace the carbon within the microbial population and the amount of biomass formed from pyrene degradation. The results demonstrate that complex microbial degrader consortia rather than the expected single key players are responsible for PAH degradation in organic-amended soil.

  14. Studies on the Biodegradation of Ordnance-Related Hazardous Waste, Phase II: Soil Degradation Kinetics

    National Research Council Canada - National Science Library

    Govind, Rakesh

    1994-01-01

    ...), Triethylene glycol dinitrate (TEGDN) and Trimethyloethanetrinitrate (TMETN). Soil microcosm reactors were designed, assembled and operated to acclimate the soil microbiota to a mixture of the four selected nitrate ester compounds...

  15. Using Artificial Soil and Dry-Column Flash Chromatography to Simulate Organic Substance Leaching Process: A Colorful Environmental Chemistry Experiment

    Science.gov (United States)

    de Avellar, Isa G. J.; Cotta, Tais A. P. G.; Neder, Amarilis de V. Finageiv

    2012-01-01

    Soil is an important and complex environmental compartment and soil contamination contributes to the pollution of aquifers and other water basins. A simple and low-cost experiment is described in which the mobility of three organic compounds in an artificial soil is examined using dry-column flash chromatography. The compounds were applied on top…

  16. Fate of neptunium in an anaerobic, methanogenic microcosm

    International Nuclear Information System (INIS)

    Banaszak, J.E.; Webb, S.M.; Rittmann, B.E.; Gaillard, J.F.; Reed, D.T.

    1999-01-01

    Neptunium is found predominantly as Np(IV) in reducing environments, but as Np(V) in aerobic environments. Currently, it is not known how the interplay between biotic and abiotic processes affects Np redox speciation in the environment. To evaluate the effect of anaerobic microbial activity on the fate of Np in natural systems, Np(V) was added to a microcosm inoculated with anaerobic sediments from a metal-contaminated freshwater lake. The consortium included metal-reducing, sulfate-reducing, and methanogenic microorganisms, and acetate was supplied as the only exogenous substrate. Addition of more than 10 -5 M Np did not inhibit methane production. Total Np solubility in the active microcosm, as well as in sterilized control samples, decreased by nearly two orders of magnitude. A combination of analytical techniques, including VIS-NIR absorption spectroscopy and XANES, identified Np(IV) as the oxidation state associated with the sediments. The similar results from the active microcosm and the abiotic controls suggest that microbially produced Mn(II/III) and Fe(II) may serve as electron donors for Np reduction

  17. BIODEGRADATION OF DIESEL OIL IN SOIL AND ITS ENHANCEMENT BY APPLICATION OF BIOVENTING AND AMENDMENT WITH BREWERY WASTE EFFLUENTS AS BIOSTIMULATION-BIOAUGMENTATION AGENTS

    Directory of Open Access Journals (Sweden)

    Samuel Agarry

    2015-02-01

    Full Text Available The purpose of this study is to investigate and evaluate the effects of natural bioattenuation, bioventing, and brewery waste effluents amendment as biostimulation-bioaugmentation agent on biodegradation of diesel oil in unsaturated soil. A microcosm system was constructed consisting of five plastic buckets containing 1 kg of soil, artificially contaminated or spiked with 10% w/w of diesel oil. Biodegradation was monitored over 28 days by determining the total petroleum hydrocarbon content of the soil and total hydrocarbon degrading bacteria. The results showed that combination of brewery waste effluents amendment and bioventing technique was the most effective, reaching up to 91.5% of diesel removal from contaminated soil; with the brewery waste effluents amendment (biostimulation-bioaugmentation, the percentage of diesel oil removal was 78.7%; with bioventing, diesel oil percentage degradation was 61.7% and the natural bioattenuation technique resulted in diesel oil removal percentage be not higher than 40%. Also, the total hydrocarbon-degrading bacteria (THDB count in all the treatments increased throughout the remediation period. The highest bacterial growth was observed for combined brewery waste effluents amendment with bioventing treatment strategy. A first-order kinetic model was fitted to the biodegradation data to evaluate the biodegradation rate and the corresponding half-life time was estimated. The model revealed that diesel oil contaminated-soil microcosms under combined brewery waste effluents amendment with bioventing treatment strategy had higher biodegradation rate constants, k as well as lower half-life times, t1/2 than other remediation systems. This study showed that the microbial consortium, organic solids, nitrogen and phosphorus present in the brewery waste effluents proved to be efficient as potential biostimulation-bioaugmentation agents for bioremediation processes of soils contaminated with diesel oil

  18. Bioremediation of oil-based drill cuttings by a halophilic consortium isolated from oil-contaminated saline soil.

    Science.gov (United States)

    Rezaei Somee, Maryam; Shavandi, Mahmoud; Dastgheib, Seyed Mohammad Mehdi; Amoozegar, Mohammad Ali

    2018-05-01

    Oil-based drill cuttings are hazardous wastes containing complex hydrocarbons, heavy metals, and brine. Their remediation is a crucial step before release to the environment. In this work, we enriched a halophilic consortium, from oil-polluted saline soil, which is capable of degrading diesel as the main pollutant of oil-based drill cuttings. The degradation ability of the consortium was evaluated in microcosms using two different diluting agents (fine sand and biologically active soil). During the bioremediation process, the bacterial community dynamics of the microcosms was surveyed using PCR amplification of a fragment of 16S rRNA gene followed by denaturing gradient gel electrophoresis (DGGE). The diesel degradation rates were monitored by total petroleum hydrocarbon (TPH) measurement and the total count of heterotrophic and diesel-degrading bacteria. After 3 months, the microcosm containing fine sand and drill cuttings with the ratio of 1:1 (initial TPH of 36,000 mg/kg) showed the highest TPH removal (40%) and its dominant bacterial isolates belonged to the genera Dietzia, Arthrobacter , and Halomonas . DGGE results also confirmed the role of these genera in drill cuttings remediation. DGGE analysis of the bacterial diversity showed that Propionibacterium, Salinimicrobium, Marinobacter , and Dietzia are dominant in active soil microcosm; whereas Bacillus, Salinibacillus , and Marinobacter are abundant in sand microcosm. Our results suggest that the bioaugmentation strategy would be more successful if the diluting agent does not contain a complex microbial community.

  19. Microcosm: s'instruire en s'amusant

    CERN Multimedia

    2003-01-01

    Since the 5th May, on the first Monday of each month, CERN Microcosm invites you to its "Lundis Découverte" presentations. Each presentation has a theme connected to the science and technology used at CERN (0.5 page)

  20. Comparison of artificial intelligence techniques for prediction of soil temperatures in Turkey

    Science.gov (United States)

    Citakoglu, Hatice

    2017-10-01

    Soil temperature is a meteorological data directly affecting the formation and development of plants of all kinds. Soil temperatures are usually estimated with various models including the artificial neural networks (ANNs), adaptive neuro-fuzzy inference system (ANFIS), and multiple linear regression (MLR) models. Soil temperatures along with other climate data are recorded by the Turkish State Meteorological Service (MGM) at specific locations all over Turkey. Soil temperatures are commonly measured at 5-, 10-, 20-, 50-, and 100-cm depths below the soil surface. In this study, the soil temperature data in monthly units measured at 261 stations in Turkey having records of at least 20 years were used to develop relevant models. Different input combinations were tested in the ANN and ANFIS models to estimate soil temperatures, and the best combination of significant explanatory variables turns out to be monthly minimum and maximum air temperatures, calendar month number, depth of soil, and monthly precipitation. Next, three standard error terms (mean absolute error (MAE, °C), root mean squared error (RMSE, °C), and determination coefficient ( R 2 )) were employed to check the reliability of the test data results obtained through the ANN, ANFIS, and MLR models. ANFIS (RMSE 1.99; MAE 1.09; R 2 0.98) is found to outperform both ANN and MLR (RMSE 5.80, 8.89; MAE 1.89, 2.36; R 2 0.93, 0.91) in estimating soil temperature in Turkey.

  1. Effect of tetracycline residues in pig manure slurry on tetracycline-resistant bacteria and resistance gene tet(M) in soil microcosms

    DEFF Research Database (Denmark)

    Agersø, Yvonne; Wulff, Gitte; Vaclavik, Elvira

    2006-01-01

    and oxytetracycline were almost stable through out the experimental period, but the tetracycline concentrations had no effect on prevalence of tetracycline-resistant bacteria. The presented microcosm approach simulated natural farmland conditions well and supported results from previous field studies. (c) 2006...

  2. Impact of matric potential and pore size distribution on growth dynamics of filamentous and non-filamentous soil bacteria.

    Science.gov (United States)

    Wolf, Alexandra B; Vos, Michiel; de Boer, Wietse; Kowalchuk, George A

    2013-01-01

    The filamentous growth form is an important strategy for soil microbes to bridge air-filled pores in unsaturated soils. In particular, fungi perform better than bacteria in soils during drought, a property that has been ascribed to the hyphal growth form of fungi. However, it is unknown if, and to what extent, filamentous bacteria may also display similar advantages over non-filamentous bacteria in soils with low hydraulic connectivity. In addition to allowing for microbial interactions and competition across connected micro-sites, water films also facilitate the motility of non-filamentous bacteria. To examine these issues, we constructed and characterized a series of quartz sand microcosms differing in matric potential and pore size distribution and, consequently, in connection of micro-habitats via water films. Our sand microcosms were used to examine the individual and competitive responses of a filamentous bacterium (Streptomyces atratus) and a motile rod-shaped bacterium (Bacillus weihenstephanensis) to differences in pore sizes and matric potential. The Bacillus strain had an initial advantage in all sand microcosms, which could be attributed to its faster growth rate. At later stages of the incubation, Streptomyces became dominant in microcosms with low connectivity (coarse pores and dry conditions). These data, combined with information on bacterial motility (expansion potential) across a range of pore-size and moisture conditions, suggest that, like their much larger fungal counterparts, filamentous bacteria also use this growth form to facilitate growth and expansion under conditions of low hydraulic conductivity. The sand microcosm system developed and used in this study allowed for precise manipulation of hydraulic properties and pore size distribution, thereby providing a useful approach for future examinations of how these properties influence the composition, diversity and function of soil-borne microbial communities.

  3. Impact of matric potential and pore size distribution on growth dynamics of filamentous and non-filamentous soil bacteria.

    Directory of Open Access Journals (Sweden)

    Alexandra B Wolf

    Full Text Available The filamentous growth form is an important strategy for soil microbes to bridge air-filled pores in unsaturated soils. In particular, fungi perform better than bacteria in soils during drought, a property that has been ascribed to the hyphal growth form of fungi. However, it is unknown if, and to what extent, filamentous bacteria may also display similar advantages over non-filamentous bacteria in soils with low hydraulic connectivity. In addition to allowing for microbial interactions and competition across connected micro-sites, water films also facilitate the motility of non-filamentous bacteria. To examine these issues, we constructed and characterized a series of quartz sand microcosms differing in matric potential and pore size distribution and, consequently, in connection of micro-habitats via water films. Our sand microcosms were used to examine the individual and competitive responses of a filamentous bacterium (Streptomyces atratus and a motile rod-shaped bacterium (Bacillus weihenstephanensis to differences in pore sizes and matric potential. The Bacillus strain had an initial advantage in all sand microcosms, which could be attributed to its faster growth rate. At later stages of the incubation, Streptomyces became dominant in microcosms with low connectivity (coarse pores and dry conditions. These data, combined with information on bacterial motility (expansion potential across a range of pore-size and moisture conditions, suggest that, like their much larger fungal counterparts, filamentous bacteria also use this growth form to facilitate growth and expansion under conditions of low hydraulic conductivity. The sand microcosm system developed and used in this study allowed for precise manipulation of hydraulic properties and pore size distribution, thereby providing a useful approach for future examinations of how these properties influence the composition, diversity and function of soil-borne microbial communities.

  4. The Dynamic Trend of Soil Water Content in Artificial Forests on the Loess Plateau, China

    Directory of Open Access Journals (Sweden)

    Yu Wang

    2016-10-01

    Full Text Available Extensive vegetation restoration projects have been widely implemented on the Loess Plateau, China, since 1998. In addition, increasing attention has been paid to the influence of revegetation on soil water. However, the response of the soil water content (SWC to vegetation construction and management has not been adequately studied. In this study, three types of typical artificial vegetation on level bench land were selected, including Pinus tabulaeformis Carr., Prunus sibirica L., and Hippophae rhamnoides Linn., with the natural grassland used as a control group in Wuqi County. The 0–160 cm SWC was monitored biweekly from August 2010 to June 2013 using a portable time domain reflectometry system. The serial autocorrelation test, Mann–Kendall trend test, and prewhitening Mann–Kendall test were employed to systematically analyze the trends in soil water dynamics. The results show that the SWC of the three selected artificial forests/shrub had a significant accumulation process in the 0–160 cm profile during the monitoring period, whereas such an increasing tendency was not observed for natural grassland. Furthermore, the greatest responses were observed in the Pinus tabulaeformis Carr. plantation.

  5. Influence of triethyl phosphate on phosphatase activity in shooting range soil: Isolation of a zinc-resistant bacterium with an acid phosphatase.

    Science.gov (United States)

    Story, Sandra; Brigmon, Robin L

    2017-03-01

    Phosphatase-mediated hydrolysis of organic phosphate may be a viable means of stabilizing heavy metals via precipitation as a metal phosphate in bioremediation applications. We investigated the effect of triethyl phosphate (TEP) on soil microbial-phosphatase activity in a heavy-metal contaminated soil. Gaseous TEP has been used at subsurface sites for bioremediation of organic contaminants but not applied in heavy-metal contaminated areas. Little is known about how TEP affects microbial activity in soils and it is postulated that TEP can serve as a phosphate source in nutrient-poor groundwater and soil/sediments. Over a 3-week period, TEP amendment to microcosms containing heavy-metal contaminated soil resulted in increased activity of soil acid-phosphatase and repression of alkaline phosphatase, indicating a stimulatory effect on the microbial population. A soil-free enrichment of microorganisms adapted to heavy-metal and acidic conditions was derived from the TEP-amended soil microcosms using TEP as the sole phosphate source and the selected microbial consortium maintained a high acid-phosphatase activity with repression of alkaline phosphatase. Addition of 5mM zinc to soil-free microcosms had little effect on acid phosphatase but inhibited alkaline phosphatase. One bacterial member from the consortium, identified as Burkholderia cepacia sp., expressed an acid-phosphatase activity uninhibited by high concentrations of zinc and produced a soluble, indigo pigment under phosphate limitation. The pigment was produced in a phosphate-free medium and was not produced in the presence of TEP or phosphate ion, indicative of purple acid-phosphatase types that are pressed by bioavailable phosphate. These results demonstrate that TEP amendment was bioavailable and increased overall phosphatase activity in both soil and soil-free microcosms supporting the possibility of positive outcomes in bioremediation applications. Copyright © 2016. Published by Elsevier Inc.

  6. Impact of metal pollution and Thlaspi caerulescens growth on soil microbial communities.

    NARCIS (Netherlands)

    Epelde, L.; Becerril, J.M.; Kowalchuk, G.A.; Deng, Y.; Zhou, J.; Garbisu, C.

    2010-01-01

    been proposed as indicators of soil functioning, making them potentially useful in evaluating the recovery of polluted soils via phytoremediation strategies. To evaluate microbial responses to metal phytoextraction using hyperaccumulators, a microcosm experiment was carried out to study the impacts

  7. [Storages and distributed patterns of soil organic carbon and total nitrogen during the succession of artificial sand-binding vegetation in arid desert ecosystem].

    Science.gov (United States)

    Jia, Xiao-Hong; Li, Xin-Rong; Zhou, Yu-Yan; Li, Yuan-Shou

    2012-03-01

    Soil carbon pool acts as the largest one of carbon pools in the terrestrial ecosystem. The storages and distributed patterns of soil organic carbon (SOC) and total nitrogen (TN) evaluated accurately are helpful to predict the feedback between the terrestrial ecosystem and climate changes. Based on the data about bulk density, content of SOC and TN at 0-100 cm soil profile, the density of SOC and TN at the temporal (chronosequence of artificial vegetation) and spatial (vertical) distributed patterns have been estimated. The results indicated that storages of SOC and TN at 0-100 cm depth increased with the chronosequence of artificial vegetation. The storages of SOC and TN showed the same tendency with the succession time of artificial vegetation. Storages of SOC and TN significantly increased at the early stage of banding sand by artificially vegetation ( 25 a). The variation of storages mainly occurred in the 0-20 cm depth. The storages decreased with the soil vertical depth. At the early stage of banding sand, increase in storage included every depth (0-100 cm). Whereas, at the later stage, increase in storage at 0-20 cm depth was main, and increase in the 20-100 cm was inconspicuous. The accumulation of storage at the shallow soil depth was more notability with the succession of artificial vegetation. The distributed pattern of storage in SOC and TN has been confirmed in arid desert regions below 200 mm annual precipitation. This was beneficial to understand the carbon cycle and to predict the feedback relationship between desert ecosystem and climate changes.

  8. Artificial Recharge – Measurement of Soil Infiltration in Rožnov Pod Radhoštěm

    Directory of Open Access Journals (Sweden)

    Chromíková Jitka

    2017-12-01

    Full Text Available The purpose of this study is to evaluate the potential for infiltration in a study area – Rožnov pod Radhoštěm, the Czech Republic. The results are important for the future design of an artificial recharge structure as a method to store water underground in times of water surplus. A total of six measurements of infiltration were made using a double ring infiltrometer on selected prospective sites for the future application of artificial recharge. The results of infiltration tests were analysed based on the Philip’s model. The steady soil infiltration rates ranged from 28 cm∙h−1 to 70.38 cm∙h−1and the cumulative soil infiltration ranged from 58 cm to 68 cm.

  9. The impact of the fungicide fenpropimorph (Corbel) on bacterivorous and fungivorous protozoa in soil

    DEFF Research Database (Denmark)

    Ekelund, Flemming

    1999-01-01

    1. The ability of indigenous soil protozoa to survive and multiply when exposed to various concentrations of the fungicide fenpropimorph was investigated. The number of protozoan taxa in relation to biocide concentration was examined in enrichment cultures. The population dynamics of bacterivorous...... and fungivorous protozoa, hyphal forming units, and respiration activity were followed in soil microcosms amended with glucose and various concentrations of fenpropimorph. 2. The average number of flagellate taxa detected in 50-mg portions of air-dried soil declined from 12 to zero with fenpropimorph...... as in systems with glucose only; however, soil respiration was significantly impeded in microcosm systems with a low pesticide content and stimulated in systems with a high pesticide content. 4. Bacterivorous protozoa (naked amoebae and heterotrophic flagellates) were affected at all tested concentrations (074...

  10. Long-term effects of ozone on CO2 exchange in peatland microcosms

    DEFF Research Database (Denmark)

    Haapala, JK; Mörsky, SK; Rinnan, Riikka

    2011-01-01

    Effects of elevated tropospheric ozone concentration on the CO2 exchange of peatland microcosms and the photosynthetic capacity of the dominating sedge, Eriophorum vaginatum, were studied in a four-year open-field experiment. The net ecosystem CO2 exchange and the dark respiration rate of the mic......Effects of elevated tropospheric ozone concentration on the CO2 exchange of peatland microcosms and the photosynthetic capacity of the dominating sedge, Eriophorum vaginatum, were studied in a four-year open-field experiment. The net ecosystem CO2 exchange and the dark respiration rate...... exchange of the peatland microcosms....

  11. Assessment of trace element accumulation by earthworms in an orchard soil remediation study using soil amendments

    Science.gov (United States)

    Centofantia, Tiziana; Chaney, Rufus L.; Beyer, W. Nelson; McConnell, Laura L.; Davis, A. P.; Jackson, Dana

    2016-01-01

    This study assessed potential bioaccumulation of various trace elements in grasses and earthworms as a consequence of soil incorporation of organic amendments for in situ remediation of an orchard field soil contaminated with organochlorine and Pb pesticide residues. In this experiment, four organic amendments of differing total organic carbon content and quality (two types of composted manure, composted biosolids, and biochar) were added to a contaminated orchard field soil, planted with two types of grasses, and tested for their ability to reduce bioaccumulation of organochlorine pesticides and metals in earthworms. The experiment was carried out in 4-L soil microcosms in a controlled environment for 90 days. After 45 days of orchardgrass or perennial ryegrass growth, Lumbricus terrestris L. were introduced to the microcosms and exposed to the experimental soils for 45 days before the experiment was ended. Total trace element concentrations in the added organic amendments were below recommended safe levels and their phytoavailablity and earthworm availability remained low during a 90-day bioremediation study. At the end of the experiment, total tissue concentrations of Cu, Cd, Mn, Pb, and Zn in earthworms and grasses were below recommended safe levels. Total concentrations of Pb in test soil were similar to maximum background levels of Pb recorded in soils in the Eastern USA (100 mg kg−1 d.w.) because of previous application of orchard pesticides. Addition of aged dairy manure compost and presence of grasses was effective in reducing the accumulation of soil-derived Pb in earthworms, thus reducing the risk of soil Pb entry into wildlife food chains.

  12. Bioremediation of a polyaromatic hydrocarbon contaminated soil by native soil microbiota and bioaugmentation with isolated microbial consortia.

    Science.gov (United States)

    Silva, Isis Serrano; Santos, Eder da Costa dos; Menezes, Cristiano Ragagnin de; Faria, Andréia Fonseca de; Franciscon, Elisangela; Grossman, Matthew; Durrant, Lucia Regina

    2009-10-01

    Biodegradation of a mixture of PAHs was assessed in forest soil microcosms performed either without or with bioaugmentation using individual fungi and bacterial and a fungal consortia. Respiratory activity, metabolic intermediates and extent of PAH degradation were determined. In all microcosms the low molecular weight PAH's naphthalene, phenanthrene and anthracene, showed a rapid initial rate of removal. However, bioaugmentation did not significantly affect the biodegradation efficiency for these compounds. Significantly slower degradation rates were demonstrated for the high molecular weight PAH's pyrene, benz[a]anthracene and benz[a]pyrene. Bioaugmentation did not improve the rate or extent of PAH degradation, except in the case of Aspergillus sp. Respiratory activity was determined by CO(2) evolution and correlated roughly with the rate and timing of PAH removal. This indicated that the PAHs were being used as an energy source. The native microbiota responded rapidly to the addition of the PAHs and demonstrated the ability to degrade all of the PAHs added to the soil, indicating their ability to remediate PAH-contaminated soils.

  13. Fate and bioavailability of ¹⁴C-pyrene and ¹⁴C-lindane in sterile natural and artificial soils and the influence of aging.

    Science.gov (United States)

    Smídová, Klára; Hofman, Jakub; Ite, Aniefiok E; Semple, Kirk T

    2012-12-01

    Soil organic matter is used to extrapolate the toxicity and bioavailability of organic pollutants between different soils. However, it has been shown that other factors such as microbial activity are crucial. The aim of this study was to investigate if sterilization can reduce differences in the fate and bioavailability of organic pollutants between different soils. Three natural soils with increasing total organic carbon (TOC) content were collected and three artificial soils were prepared to obtain similar TOCs. Soils were sterilized and spiked with (14)C-pyrene and (14)C-lindane. Total (14)C radioactivity, HPCD extractability, and bioaccumulation in Eisenia fetida were measured over 56 days. When compared to non-sterile soils, differences between the natural and artificial soils and the influence of soil-contaminant contact time were generally reduced in the sterile soils (especially with middle TOC). The results indicate the possibility of using sterile soils as "the worst case scenario" in soil ecotoxicity studies. Copyright © 2012 Elsevier Ltd. All rights reserved.

  14. A DNA Origami Mechanical Device for the Regulation of Microcosmic Structural Rigidity.

    Science.gov (United States)

    Wan, Neng; Hong, Zhouping; Wang, Huading; Fu, Xin; Zhang, Ziyue; Li, Chao; Xia, Han; Fang, Yan; Li, Maoteng; Zhan, Yi; Yang, Xiangliang

    2017-11-01

    DNA origami makes it feasible to fabricate a tremendous number of DNA nanostructures with various geometries, dimensions, and functionalities. Moreover, an increasing amount of research on DNA nanostructures is focused on biological and biomedical applications. Here, the reversible regulation of microcosmic structural rigidity is accomplished using a DNA origami device in vitro. The designed DNA origami monomer is composed of an internal central axis and an external sliding tube. Due to the external tube sliding, the device transforms between flexible and rigid states. By transporting the device into the liposome, the conformational change of the origami device induces a structural change in the liposome. The results obtained demonstrate that the programmed DNA origami device can be applied to regulate the microcosmic structural rigidity of liposomes. Because microcosmic structural rigidity is important to cell proliferation and function, the results obtained potentially provide a foundation for the regulation of cell microcosmic structural rigidity using DNA nanostructures. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  15. Formation and release of non-extractable 14C-Dicamba residues in soil under sterile and non-sterile regimes

    International Nuclear Information System (INIS)

    Gevao, Bondi; Jones, Kevin C.; Semple, Kirk T.

    2005-01-01

    The role of native soil microorganisms in the formation and release of non-extractable 14 C-residues, previously treated with 14 C-Dicamba, was investigated to examine their significance to the longer-term environmental effects on non-extractable pesticide residues. A 90 d study compared the fate of Dicamba under sterile and non-sterile regimes. In addition, soils were aged for 30 d and repeatedly extracted with a 0.01 M CaCl 2 solution, to an extraction end point, to produce non-extractable residues. The extracted soil containing non-extractable residues was mixed with clean soil that had been freshly spiked with non-labeled Dicamba at 0.2 mg kg -1 to increase the bulk volume of the soil and stimulate microbial activity. Sub-samples were then introduced into microcosms to compare the extent of microbially facilitated release and mineralisation with release rates in sterile microcosms. The results show that microorganisms play a significant role in the formation and release of non-extractable Dicamba residues. The release of 14 C-activity in sterile microcosms was linked to physical mixing of the extracted soil with field soil prior to the beginning of the incubations. The released 14 C-activity may be further mineralized, reincorporated into humus, or taken up by plants or other soil inhabiting biota

  16. Phylogenetic diversity of dominant bacterial communities during bioremediation of crude oil-polluted soil

    Directory of Open Access Journals (Sweden)

    Eugene Thomas Cloete

    2011-08-01

    Full Text Available Bioremediation of hydrocarbon pollutants is advantageous owing to the cost-effectiveness of the technology and the ubiquity of hydrocarbon degrading microorganisms in the soil. Soil microbial diversity is affected by hydrocarbon perturbation thus selective enrichment of hydrocarbon utilizers occurs. Hydrocarbons interact with the soil matrix and soil microorganisms determining the fate of the contaminants relative to their chemical nature and microbial degradative capabilities respectively. Bacterial dynamics in crude oil-polluted soil microcosms undergoing bioremediation were investigated over a 42-day period. Four out of the five microcosms containing 4kg of pristine soil each were contaminated with 4% Arabian light crude oil. Three microcosms were amended with either 25g of NPK fertilizer, calcium ammonium nitrate or poultry droppings respectively while the fourth designated oil-contaminated control was unamended. The fifth microcosm had only pristine soil and was set up to ascertain indigenous bacterial community structure pre-contamination. Biostimulated soils were periodically tilled and watered. Hydrocarbon degradation was measured throughout the experimental period by gas chromatography. Gas chromatographic tracing of residual hydrocarbons in biostimulated soils showed marked attenuation of contaminants starting from the second (day 14 till the sixth (day 42 week after contamination whereas no significant reduction in hydrocarbon peaks was seen in the oil contaminated control soil throughout the 6-week experimental period. Molecular fingerprints of bacterial communities involved in aerobic biodegradation of crude oil hydrocarbons in biostimulated soils and controls were generated with DGGE using PCR-amplification of 16S rRNA gene obtained from extracted total soil community DNA. DGGE fingerprints demonstrated that NPK, calcium ammonium nitrate and poultry droppings selected different bacterial populations during the active phase of oil

  17. Dermal absorption of benzo[a]pyrene into human skin from soil: Effect of artificial weathering, concentration, and exposure duration.

    Science.gov (United States)

    Peckham, Trevor K; Shirai, Jeffry H; Bunge, Annette L; Lowney, Yvette W; Ruby, Michael V; Kissel, John C

    2017-11-01

    In vitro assessments of 14 C-benzo[a]pyrene (BaP) absorption through human epidermis were conducted with the sub-63-μm fraction of four test soils containing different amounts of organic and black carbon. Soils were artificially weathered for eight weeks and applied to epidermis at nominal BaP concentrations of 3 and 10 mg/kg for 8 or 24 h. Experiments were also conducted at 24 h with unweathered soils and with BaP deposited onto skin from acetone at a comparable chemical load. For the weathered soils, absorption was independent of the amount of organic or black carbon, the mass in the receptor fluid was proportional to exposure duration but independent of concentration, and the mass recovered in the skin after washing was proportional to concentration and independent of exposure time. Results from the weathered and unweathered soils were similar except for the mass recovered in the washed skin, which was lower for the weathered soil only at the higher concentration. We hypothesize that chemical concentrations exceeded the BaP sorption capacity accessible within the artificial weathering timeframe for all soils tested, and that BaP mass in the washed skin was dominated by particles that were not removed by washing. Fluxes into and through skin from soils were lower by an order of magnitude than from acetone-deposited BaP.

  18. Establishment and effectiveness of inoculated arbuscular mycorrhizal fungi in agricultural soils.

    Science.gov (United States)

    Köhl, Luise; Lukasiewicz, Catherine E; van der Heijden, Marcel G A

    2016-01-01

    Arbuscular mycorrhizal fungi (AMF) are promoted as biofertilizers for sustainable agriculture. So far, most researchers have investigated the effects of AMF on plant growth under highly controlled conditions with sterilized soil, soil substrates or soils with low available P or low inoculum potential. However, it is still poorly documented whether inoculated AMF can successfully establish in field soils with native AMF communities and enhance plant growth. We inoculated grassland microcosms planted with a grass-clover mixture (Lolium multiflorum and Trifolium pratense) with the arbuscular mycorrhizal fungus Rhizoglomus irregulare. The microcosms were filled with eight different unsterilized field soils that varied greatly in soil type and chemical characteristics and indigenous AMF communities. We tested whether inoculation with AMF enhanced plant biomass and R. irregulare abundance using a species specific qPCR. Inoculation increased the abundance of R. irregulare in all soils, irrespective of soil P availability, the initial abundance of R. irregulare or the abundance of native AM fungal communities. AMF inoculation had no effect on the grass but significantly enhanced clover yield in five out of eight field soils. The results demonstrate that AMF inoculation can be successful, even when soil P availability is high and native AMF communities are abundant. © 2015 John Wiley & Sons Ltd.

  19. Biodegradability of pharmaceutical compounds in agricultural soils irrigated with treated wastewater

    International Nuclear Information System (INIS)

    Grossberger, Amnon; Hadar, Yitzhak; Borch, Thomas; Chefetz, Benny

    2014-01-01

    Pharmaceutical compounds (PCs) are introduced into agricultural soils via irrigation with treated wastewater (TWW). Our data show that carbamazepine, lamotrigine, caffeine, metoprolol, sulfamethoxazole and sildenafil are persistent in soils when introduced via TWW. However, other PCs, namely diclofenac, ibuprofen, bezafibrate, gemfibrozil and naproxen were not detected in soils when introduced via TWW. This is likely due to rapid degradation as confirmed in our microcosm studies where they exhibited half-lives (t 1/2 ) between 0.2–9.5 days when soils were spiked at 50 ng/g soil and between 3 and 68 days when soils were spiked at 5000 ng/g soil. The degradation rate and extent of PCs observed in microcosm studies were similar in soils that had been previously irrigated with TWW or fresh water. This suggests that pre-exposure of the soils to PCs via irrigation with TWW does not enhance their biodegradation. This suggests that PCs are probably degraded in soils via co-metabolism. Highlights: • Some pharmaceuticals are highly persistent in arable soils. • Weak acid pharmaceuticals are readily degradable in agricultural soils. • Irrigation with treated wastewater does not enhance degradation of pharmaceuticals. • Degradation of pharmaceuticals in soil is probably occurred via co-metabolism. -- Some pharmaceutical compounds are persistent in arable soils when introduced via irrigation with treated wastewater

  20. Use of a Whole-Cell Biosensor and Flow Cytometry to Detect AHL Production by an Indigenous Soil Community During Decomposition

    DEFF Research Database (Denmark)

    Burmølle, Mette; Hansen, Lars Hestbjerg; Sørensen, Søren Johannes

    2005-01-01

    originating from Vibrio fischeri. This resulted in a whole-cell biosensor, responding to the presence of AHL compounds. The biosensor was introduced to compost soil microcosms amended with nettle leaves. After 3 days of incubation, cells were extracted and analyzed by flow cytometry. All microcosms contained...

  1. Impact of imidaclorprid on live-cycle development of Coccinella septempunctata in laborratory microcosms

    NARCIS (Netherlands)

    Caihong, Yu; Ronghua, Lin; Maoran, Fu; Yanming, Zhou; Brock, T.C.M.

    2014-01-01

    Long-term effects of a single application of imidacloprid on ladybird beetle, Coccinella septempunctata L., were studied in indoor laboratory microcosms, starting with the 2nd instar larvae of C. septempunctata but covering the full life cycle. The microcosms comprised enclosures containing a pot

  2. Soil aquifer treatment of artificial wastewater under saturated conditions

    KAUST Repository

    Essandoh, H. M K

    2011-05-01

    A 2000 mm long saturated laboratory soil column was used to simulate soil aquifer treatment under saturated conditions to assess the removal of chemical and biochemical oxygen demand (COD and BOD), dissolved organic carbon (DOC), nitrogen and phosphate, using high strength artificial wastewater. The removal rates were determined under a combination of constant hydraulic loading rates (HLR) and variable COD concentrations as well as variable HLR under a constant COD. Within the range of COD concentrations considered (42 mg L-1-135 mg L-1) it was found that at fixed hydraulic loading rate, a decrease in the influent concentrations of dissolved organic carbon (DOC), biochemical oxygen demand (BOD), total nitrogen and phosphate improved their removal efficiencies. At the high COD concentrations applied residence times influenced the redox conditions in the soil column. Long residence times were detrimental to the removal process for COD, BOD and DOC as anoxic processes and sulphate reduction played an important role as electron acceptors. It was found that total COD mass loading within the range of 911 mg d-1-1780 mg d-1 applied as low COD wastewater infiltrated coupled with short residence times would provide better effluent quality than the same mass applied as a COD with higher concentration at long residence times. The opposite was true for organic nitrogen where relatively high concentrations coupled with long residence time gave better removal efficiency. © 2011.

  3. Monitoring bioremediation of atrazine in soil microcosms using molecular tools

    International Nuclear Information System (INIS)

    Sagarkar, Sneha; Mukherjee, Shinjini; Nousiainen, Aura; Björklöf, Katarina; Purohit, Hemant J.; Jørgensen, Kirsten S.; Kapley, Atya

    2013-01-01

    Molecular tools in microbial community analysis give access to information on catabolic potential and diversity of microbes. Applied in bioremediation, they could provide a new dimension to improve pollution control. This concept has been demonstrated in the study using atrazine as model pollutant. Bioremediation of the herbicide, atrazine, was analyzed in microcosm studies by bioaugmentation, biostimulation and natural attenuation. Genes from the atrazine degrading pathway atzA/B/C/D/E/F, trzN, and trzD were monitored during the course of treatment and results demonstrated variation in atzC, trzD and trzN genes with time. Change in copy number of trzN gene under different treatment processes was demonstrated by real-time PCR. The amplified trzN gene was cloned and sequence data showed homology to genes reported in Arthrobacter and Nocardioides. Results demonstrate that specific target genes can be monitored, quantified and correlated to degradation analysis which would help in predicting the outcome of any bioremediation strategy. - Highlights: ► Degradation of herbicide, atrazine. ► Comparison of bioremediation via bioaugmentation, biostimulation and natural attenuation. ► Gene profile analysis in all treatments. ► Variation in trzN gene numbers correlated to degradation efficiency. ► Cloning and sequence analysis of trzN gene demonstrates very high homology to reported gene. - This study demonstrates the use of molecular tools in bioremediation to monitor and track target genes; correlates the results with degradation and thereby predicts the efficiency of treatment.

  4. Impact of bacterial and fungal processes on 14C-hexadecane mineralisation in weathered hydrocarbon contaminated soil

    International Nuclear Information System (INIS)

    Adetutu, Eric M.; Ball, Andy S.; Weber, John; Aleer, Samuel; Dandie, Catherine E.; Juhasz, Albert L.

    2012-01-01

    In this study, the impact of bacterial and fungal processes on 14 C-hexadecane mineralisation was investigated in weathered hydrocarbon contaminated soil. The extent of 14 C-hexadecane mineralisation varied depending on the bioremediation strategy employed. Under enhanced natural attenuation conditions, 14 C-hexadecane mineralisation after 98 days was 8.5 ± 3.7% compared to 14 C-hexadecane mineralisation was further enhanced through Tween 80 amendments (28.9 ± 2.4%) which also promoted the growth of a Phanerochaete chyrsosporium fungal mat. Although fungal growth in weathered hydrocarbon contaminated soil could be promoted through supplementing additional carbon sources (Tween 80, sawdust, compost, pea straw), fungal 14 C-hexadecane mineralisation was negligible when sodium azide was added to soil microcosms to inhibit bacterial activity. In contrast, when fungal activity was inhibited through nystatin additions, 14 C-hexadecane mineralisation ranged from 6.5 ± 0.2 to 35.8 ± 3.8% after 98 days depending on the supplied amendment. Bacteria inhibition with sodium azide resulted in a reduction in bacterial diversity (33–37%) compared to microcosms supplemented with nystatin or microcosms without inhibitory supplements. However, alkB bacterial groups were undetected in sodium azide supplemented microcosms, highlighting the important role of this bacterial group in 14 C-hexadecane mineralisation. - Highlights: ► The roles of different microbial groups in hydrocarbon mineralisation was assessed. ► Inhibiting fungal growth did not affect 14 C-hexadecane mineralisation. ► Inhibiting bacterial growth resulted in negligible 14 C-hexadecane mineralisation. ► alkB bacterial groups were undetected in sodium azide supplemented microcosms. ► The importance of alkB groups in 14 C-hexadecane mineralisation was highlighted.

  5. Screening of a new cadmium hyperaccumulator, Galinsoga parviflora, from winter farmland weeds using the artificially high soil cadmium concentration method.

    Science.gov (United States)

    Lin, Lijin; Jin, Qian; Liu, Yingjie; Ning, Bo; Liao, Ming'an; Luo, Li

    2014-11-01

    A new method, the artificially high soil cadmium (Cd) concentration method, was used to screen for Cd hyperaccumulators among winter farmland weeds. Galinsoga parviflora was the most promising remedial plant among 5 Cd accumulators or hyperaccumulators. In Cd concentration gradient experiments, as soil Cd concentration increased, root and shoot biomass decreased, and their Cd contents increased. In additional concentration gradient experiments, superoxide dismutase and peroxidase activities increased with soil Cd concentrations up to 75 mg kg(-1) , while expression of their isoenzymes strengthened. Catalase (CAT) activity declined and CAT isoenzyme expression weakened at soil Cd concentrations less than 50 mg kg(-1) . The maxima of Cd contents in shoots and roots were 137.63 mg kg(-1) and 105.70 mg kg(-1) , respectively, at 100 mg kg(-1) Cd in soil. The root and shoot bioconcentration factors exceeded 1.0, as did the translocation factor. In a field experiment, total extraction of Cd by shoots was 1.35 mg m(-2) to 1.43 mg m(-2) at soil Cd levels of 2.04 mg kg(-1) to 2.89 mg kg(-1) . Therefore, the artificially high soil Cd concentration method was effective for screening Cd hyperaccumulators. Galinsoga parviflora is a Cd hyperaccumulator that could be used to efficiently remediate Cd-contaminated farmland soil. © 2014 SETAC.

  6. The roles of nematodes in nitrogen and phosphorous availability, plant uptake and growth in organically amended soils

    Science.gov (United States)

    Gebremikael, Mesfin; Buchan, David; De Neve, Stefaan

    2017-04-01

    Several studies have shown that soil biota contributes significantly to the crucial ecosystem functions and services such as organic matter decomposition and nutrient cycling. The contribution of each group of soil organisms may vary depending primarily on their feeding behavior. The magnitude of the ecosystem services by the biota may also depend on the interactions amongst the soil biota groups and their surrounding environment, for instance, biochemical characteristics of the externally added organic material. However, only a few studies considered these interactions concurrently. Here, we investigated the effects of fauna-microbe-plant interactions on organic matter decomposition and nutrient cycling by applying different organic materials spanning a range of C:N ratios and presumed N availability. Nematodes were selected as model fauna because they are the most abundant soil metazoans that have a diversified feeding strategy and interact very intimately with microbes, other fauna, and plants. A series of incubation experiments were conducted in bare and planted microcosms under controlled conditions using fresh soil collected from an agricultural field and defaunated by gamma irradiation. In the first experiment without plants, the defaunated soil cores were either left unamended (UNA) or received lignin-rich low N compost (COI), N-rich compost (COV), fresh manure (MAN) or chopped clover (CLO). The entire free-living soil nematode community was extracted from unirradiated fresh soil and reinoculated into half of the soil cores that had been defaunated by gamma irradiation. Two treatments: with (+Nem) and without (-Nem) nematodes were compared for soil nitrogen and phosphorus availability, plant uptake, and PLFA signatures over time during a 105-days incubation. The same experimental setup was used to investigate further the CLO amendment in the presence of plants (rye grass was used as a model plant). Nematodes were extracted and assigned to feeding groups

  7. Pig slurry reduces the survival of Raltstonia solanacearum biovar 2 in soil

    NARCIS (Netherlands)

    Gorissen, A.; Overbeek, van L.S.; Elsas, van J.D.

    2004-01-01

    The effect of added pig slurry and solarization on the survival of Ralstonia solanacearum biovar 2 strain 1609 in soil was analysed in soil microcosms and field plots. In addition, the invasion of potato plants by R. solanacearum and the development of disease symptoms were determined, as measures

  8. [Soil moisture dynamics of artificial Caragana microphylla shrubs at different topographical sites in Horqin sandy land].

    Science.gov (United States)

    Huang, Gang; Zhao, Xue-yong; Huang, Ying-xin; Su, Yan-gui

    2009-03-01

    Based on the investigation data of vegetation and soil moisture regime of Caragana microphylla shrubs widely distributed in Horqin sandy land, the spatiotemporal variations of soil moisture regime and soil water storage of artificial sand-fixing C. microphylla shrubs at different topographical sites in the sandy land were studied, and the evapotranspiration was measured by water balance method. The results showed that the soil moisture content of the shrubs was the highest in the lowland of dunes, followed by in the middle, and in the crest of the dunes, and increased with increasing depth. No water stress occurred during the growth season of the shrubs. Soil moisture content of the shrubs was highly related to precipitation event, and the relationship of soil moisture content with precipitation was higher in deep soil layer (50-180 cm) than in shallow soil layer (0-50 cm). The variation coefficient of soil moisture content was also higher in deep layer than in shallow layer. Soil water storage was increasing in the whole growth season of the shrubs, which meant that the accumulation of soil water occurred in this area. The evapotranspiriation of the shrubs occupied above 64% of the precipitation.

  9. Transparent soil microcosms allow 3D spatial quantification of soil microbiological processes in vivo.

    Science.gov (United States)

    Downie, Helen F; Valentine, Tracy A; Otten, Wilfred; Spiers, Andrew J; Dupuy, Lionel X

    2014-01-01

    The recently developed transparent soil consists of particles of Nafion, a polymer with a low refractive index (RI), which is prepared by milling and chemical treatment for use as a soil analog. After the addition of a RI-matched solution, confocal imaging can be carried out in vivo and without destructive sampling. In a previous study, we showed that the new substrate provides a good approximation of plant growth conditions found in natural soils. In this paper, we present further development of the techniques for detailed quantitative analysis of images of root-microbe interactions in situ. Using this system it was possible for the first time to analyze bacterial distribution along the roots and in the bulk substrate in vivo. These findings indicate that the coupling of transparent soil with light microscopy is an important advance toward the discovery of the mechanisms of microbial colonisation of the rhizosphere.

  10. Light structures phototroph, bacterial and fungal communities at the soil surface.

    Directory of Open Access Journals (Sweden)

    Lawrence O Davies

    Full Text Available The upper few millimeters of soil harbour photosynthetic microbial communities that are structurally distinct from those of underlying bulk soil due to the presence of light. Previous studies in arid zones have demonstrated functional importance of these communities in reducing soil erosion, and enhancing carbon and nitrogen fixation. Despite being widely distributed, comparative understanding of the biodiversity of the soil surface and underlying soil is lacking, particularly in temperate zones. We investigated the establishment of soil surface communities on pasture soil in microcosms exposed to light or dark conditions, focusing on changes in phototroph, bacterial and fungal communities at the soil surface (0-3 mm and bulk soil (3-12 mm using ribosomal marker gene analyses. Microbial community structure changed with time and structurally similar phototrophic communities were found at the soil surface and in bulk soil in the light exposed microcosms suggesting that light can influence phototroph community structure even in the underlying bulk soil. 454 pyrosequencing showed a significant selection for diazotrophic cyanobacteria such as Nostoc punctiforme and Anabaena spp., in addition to the green alga Scenedesmus obliquus. The soil surface also harboured distinct heterotrophic bacterial and fungal communities in the presence of light, in particular, the selection for the phylum Firmicutes. However, these light driven changes in bacterial community structure did not extend to the underlying soil suggesting a discrete zone of influence, analogous to the rhizosphere.

  11. Biodiversity of soil bacteria exposed to sub-lethal concentrations of phosphonium-based ionic liquids: Effects of toxicity and biodegradation

    DEFF Research Database (Denmark)

    Sydow, Mateusz; Owsianiak, Mikołaj; Framski, Grzegorz

    2018-01-01

    on the structure of microbial community present in an urban park soil in 100-day microcosm experiments. The biodiversity decreased in all samples (Shannon's index decreased from 1.75 down to 0.74 and OTU's number decreased from 1399 down to 965) with the largest decrease observed in the microcosms spiked with ILs...... ILs or their metabolites. Thus, the introduction of phosphonium-based ILs into soils at sub-lethal concentrations may result not only in a decrease in biodiversity due to toxic effects, but also in enrichment with ILs-degrading bacteria....

  12. Application and evaluation of the artificial tritium tagging of moisture soil technique in hydrogeological research in Brazil

    International Nuclear Information System (INIS)

    Castro Rubio Poli, D. de; Kimmelmann e Silva, A.A.

    1990-08-01

    In this work, we apply and make an evaluation the artificial tritium tagging technique of moisture in many kinds of soils for the determination of rainfall infiltration in unsaturated zone. The purpose of this work is the determination of ground water recharge in order to assist evaluating sites for radioactive waste disposal and water resources. From the experimental results obtained, we can conclude that the use of artificial tritium tagging method is an accurate, useful and probably the best available technique to determine ground water recharge. (author) [pt

  13. Application and evaluation of the artificial tritium tagging of moisture soil technique in hydrogeological research in Brazil

    International Nuclear Information System (INIS)

    Castro Rubio Poli, D. de.

    1989-01-01

    In this work, we apply and make an evaluation of the technique of artificial tritium tagging of moisture in many kinds of soils for the determination of rainfall infiltration in unsaturated zone. The purpose of this work is the determination of ground water recharge in order to assist in evaluation of sites for the disposal of radioactive wastes and also to assist in the evaluation of water resources. With this thesis, we intend to present a new choice for the measuring of local ground water recharge rate, due to availability of artificial tritium. From the experimental results obtained, we can conclude that the use of artificial tritium tagging method is an accurate, useful and probably the best available technique to determine ground water recharge. (author)

  14. Nutrient Limitation in Surface Waters of the Oligotrophic Eastern Mediterranean Sea: an Enrichment Microcosm Experiment

    KAUST Repository

    Tsiola, A.; Pitta, P.; Fodelianakis, Stylianos; Pete, R.; Magiopoulos, I.; Mara, P.; Psarra, S.; Tanaka, T.; Mostajir, B.

    2015-01-01

    groups of the prokaryotic and eukaryotic (pico-, nano-, and micro-) plankton using a microcosm experiment during stratified water column conditions in the Cretan Sea (Eastern Mediterranean). Microcosms were enriched with N and P (either solely

  15. Petroleum Oxidation in Marine Microcosms by Natural Microbial Assemblages

    Science.gov (United States)

    Wardlaw, G. D.; Reddy, C. M.; Nelson, R. K.; Ehrhardt, C. J.; Valentine, D. L.

    2006-12-01

    Millions of gallons of petroleum are emitted into marine environments each year and the oxidation of this oil by microbes is an important mechanism for mediating toxicity. In terms of quantity, petroleum is the most abundant organic pollutant impacting marine environments today. Recent advances in chromatography have led to the development of comprehensive two-dimensional gas chromatography (GC &GC). The acronym, GC GC, is used because orthogonal gas chromatographic separations are achieved in both analytical dimensions by using stationary phases with varying partitioning abilities and selectivity. This novel method has greatly expanded the analytical window of petroleum hydrocarbons and was used to track the loss of petroleum hydrocarbons in aerobic marine microcosm experiments. Sediment microcosms were composed of seawater and sediment collected from the Coal Oil Point (COP) seep field off the coast of Santa Barbara, CA. Oil collected directly from the reservoir underlying the seep field was added to each microcosm, and samples were incubated for one year. Net metabolism was tracked by quantifying oxygen consumption and carbon dioxide production. The loss of petroleum components was tracked with GC GC, whereas the bacterial and archaeal community structures were tracked using T-RFLP. Results of these incubation studies will be presented.

  16. An automated image analysis system to measure and count organisms in laboratory microcosms.

    Directory of Open Access Journals (Sweden)

    François Mallard

    Full Text Available 1. Because of recent technological improvements in the way computer and digital camera perform, the potential use of imaging for contributing to the study of communities, populations or individuals in laboratory microcosms has risen enormously. However its limited use is due to difficulties in the automation of image analysis. 2. We present an accurate and flexible method of image analysis for detecting, counting and measuring moving particles on a fixed but heterogeneous substrate. This method has been specifically designed to follow individuals, or entire populations, in experimental laboratory microcosms. It can be used in other applications. 3. The method consists in comparing multiple pictures of the same experimental microcosm in order to generate an image of the fixed background. This background is then used to extract, measure and count the moving organisms, leaving out the fixed background and the motionless or dead individuals. 4. We provide different examples (springtails, ants, nematodes, daphnia to show that this non intrusive method is efficient at detecting organisms under a wide variety of conditions even on faintly contrasted and heterogeneous substrates. 5. The repeatability and reliability of this method has been assessed using experimental populations of the Collembola Folsomia candida. 6. We present an ImageJ plugin to automate the analysis of digital pictures of laboratory microcosms. The plugin automates the successive steps of the analysis and recursively analyses multiple sets of images, rapidly producing measurements from a large number of replicated microcosms.

  17. Ecological effects of ionizing radiation and other toxic agents on the aquatic microcosm

    International Nuclear Information System (INIS)

    Fuma, Shoichi; Ishii, Nobuyoshi; Tanaka, Nobuyuki; Takeda, Hiroshi; Miyamoto, Kiriko; Yanagisawa, Kei; Kawabata, Zen'ichiro

    2004-01-01

    The purpose of this study was comparative evaluation of effects of ionizing radiation and other various toxic agents on aquatic microbial communities. For this purpose, the authors investigated effects of γ-rays, ultraviolet (UV) radiation, acidification, aluminum, manganese, nickel, copper and gadolinium on the microcosm, i.e., the experimental model ecosystem consisting of populations of the flagellate alga Euglena gracilis as a producer, the ciliate protozoan Tetrahymena thermophila as a consumer and the bacterium Eseherichia coli as a decomposer. Effects of toxic agents in the microcosm were not only direct effects but also community-level effects due to interactions among the constituting species or between organisms and toxic agents. In general, the degrees of effects observed in the microcosm could be categorized as follows: no effects; recognizable effects, i.e., decrease or increase in the cell densities of at least one species; severe effects, i.e., extinction of one or two species; and destructive effects, i.e., extinction of all species. These results were analyzed by the ecological effect index (EEI), in which differences in the cell densities between exposed and control microcosm were represented by the Euclidean distance function. A 50% effect doses for the microcosm (ED M50 ), at which the EEI became 50%, were evaluated to be 530 Gy for γ-rays, 2100 J m -2 for UV, 4100 μM for manganese, 45 μM for nickel, 110 μM for copper and 250 μM for gadolinium. (author)

  18. A plasma ball in the Microcosm museum

    CERN Multimedia

    Maximilien Brice

    2005-01-01

    Plasma balls, like the one shown here, are displayed in the Microcosm exhibition where families can visit to learn more about the experiments carried out in a research institute like CERN. Hands-on activities allow visitors to get a step closer to the research activities carried out at CERN.

  19. Parameter Sensitivity Analysis on Deformation of Composite Soil-Nailed Wall Using Artificial Neural Networks and Orthogonal Experiment

    Directory of Open Access Journals (Sweden)

    Jianbin Hao

    2014-01-01

    Full Text Available Based on the back-propagation algorithm of artificial neural networks (ANNs, this paper establishes an intelligent model, which is used to predict the maximum lateral displacement of composite soil-nailed wall. Some parameters, such as soil cohesive strength, soil friction angle, prestress of anchor cable, soil-nail spacing, soil-nail diameter, soil-nail length, and other factors, are considered in the model. Combined with the in situ test data of composite soil-nail wall reinforcement engineering, the network is trained and the errors are analyzed. Thus it is demonstrated that the method is applicable and feasible in predicting lateral displacement of excavation retained by composite soil-nailed wall. Extended calculations are conducted by using the well-trained intelligent forecast model. Through application of orthogonal table test theory, 25 sets of tests are designed to analyze the sensitivity of factors affecting the maximum lateral displacement of composite soil-nailing wall. The results show that the sensitivity of factors affecting the maximum lateral displacement of composite soil nailing wall, in a descending order, are prestress of anchor cable, soil friction angle, soil cohesion strength, soil-nail spacing, soil-nail length, and soil-nail diameter. The results can provide important reference for the same reinforcement engineering.

  20. Nutrient limitation of soil microbial activity during the earliest stages of ecosystem development.

    Science.gov (United States)

    Castle, Sarah C; Sullivan, Benjamin W; Knelman, Joseph; Hood, Eran; Nemergut, Diana R; Schmidt, Steven K; Cleveland, Cory C

    2017-11-01

    A dominant paradigm in ecology is that plants are limited by nitrogen (N) during primary succession. Whether generalizable patterns of nutrient limitation are also applicable to metabolically and phylogenetically diverse soil microbial communities, however, is not well understood. We investigated if measures of N and phosphorus (P) pools inform our understanding of the nutrient(s) most limiting to soil microbial community activities during primary succession. We evaluated soil biogeochemical properties and microbial processes using two complementary methodological approaches-a nutrient addition microcosm experiment and extracellular enzyme assays-to assess microbial nutrient limitation across three actively retreating glacial chronosequences. Microbial respiratory responses in the microcosm experiment provided evidence for N, P and N/P co-limitation at Easton Glacier, Washington, USA, Puca Glacier, Peru, and Mendenhall Glacier, Alaska, USA, respectively, and patterns of nutrient limitation generally reflected site-level differences in soil nutrient availability. The activities of three key extracellular enzymes known to vary with soil N and P availability developed in broadly similar ways among sites, increasing with succession and consistently correlating with changes in soil total N pools. Together, our findings demonstrate that during the earliest stages of soil development, microbial nutrient limitation and activity generally reflect soil nutrient supply, a result that is broadly consistent with biogeochemical theory.

  1. Application of biodegradation screening protocol to contaminated soils from manufactured gas plant sites

    International Nuclear Information System (INIS)

    Smith, J.R.; Nakles, D.V.; Cushey, M.A.; Morgan, D.J.; Linz, D.G.

    1990-01-01

    Bioremediation (i.e., land treatment) has been demonstrated to be a viable option for treating a variety of soils contamianted with organics. Conventional treatability studies utilize soil microcosm experiments to evaluate the potential for bioremediation of specific contaminated soils. Unfortunately, soil microcosms take from 4- to 6-months to complete and do not fully exploit the current understanding of the bioremediation process. This paper describes a treatability protocol that investigates underlying mechanisms and can be completed in 2- to 3-months. It is believed that soil bioremediation is governed by the sequential processes of contanate desorption from the soil into the aqueous phase and subsequent oxidation by microorganisms. The relative importance of each process depends upon the contaminant and soil. Accordingly, the treatability protocol has three steps. In the first step, tests are performed to determine soil characteristics. In the second step, tests are performed to characterize the desorption of contaminants from the soil. In the third step, the potential for biological oxidaiton is evaluated with a soil-water slurry reactor that maximizes desorption and provides an optimum environment for microbial growth. This paper provides a thorough discussion of the laboratory protocol including the primary theoretical tenets which serve as its basis. Preliminary procedures and results are presented for soils contaminated with manufactured gas plant (MGP) wastes. Particular attention is focused on biodegradation of polynuclear aromatic hydrocarbons (PAHs)

  2. MICROCOSM AND IN-SITU FIELD STUDIES OF ENHANCED BIOTRANSFORMATION OF TRICHLOROETHYLENE BY PHENOL-UTILIZING MICROORGANISMS

    Science.gov (United States)

    The ability of different aerobic groundwater microorganisms to cometabolically degrade trichloroethylene (TCE), 1,2-cis-dichloroethylene (c-DCE), and 1,2-trans-dichloroethylene (t-DCE) was evaluated both in groundwater-fed microcosms and in situ in a shallow aquifer. Microcosms a...

  3. Impact of bacterial and fungal processes on {sup 14}C-hexadecane mineralisation in weathered hydrocarbon contaminated soil

    Energy Technology Data Exchange (ETDEWEB)

    Adetutu, Eric M.; Ball, Andy S. [School of Biological Sciences, Flinders University, Adelaide, South Australia, 5001 (Australia); Weber, John; Aleer, Samuel; Dandie, Catherine E. [Centre for Environmental Risk Assessment and Remediation (CERAR), University of South Australia, Mawson Lakes Campus, Adelaide, South Australia, 5095 (Australia); Cooperative Research Centre for Contamination Assessment and Remediation of the Environment (CRC CARE), Mawson Lakes, Adelaide, South Australia, 5095 (Australia); Juhasz, Albert L., E-mail: Albert.Juhasz@unisa.edu.au [Centre for Environmental Risk Assessment and Remediation (CERAR), University of South Australia, Mawson Lakes Campus, Adelaide, South Australia, 5095 (Australia); Cooperative Research Centre for Contamination Assessment and Remediation of the Environment (CRC CARE), Mawson Lakes, Adelaide, South Australia, 5095 (Australia)

    2012-01-01

    In this study, the impact of bacterial and fungal processes on {sup 14}C-hexadecane mineralisation was investigated in weathered hydrocarbon contaminated soil. The extent of {sup 14}C-hexadecane mineralisation varied depending on the bioremediation strategy employed. Under enhanced natural attenuation conditions, {sup 14}C-hexadecane mineralisation after 98 days was 8.5 {+-} 3.7% compared to < 1.2% without nitrogen and phosphorus additions. {sup 14}C-hexadecane mineralisation was further enhanced through Tween 80 amendments (28.9 {+-} 2.4%) which also promoted the growth of a Phanerochaete chyrsosporium fungal mat. Although fungal growth in weathered hydrocarbon contaminated soil could be promoted through supplementing additional carbon sources (Tween 80, sawdust, compost, pea straw), fungal {sup 14}C-hexadecane mineralisation was negligible when sodium azide was added to soil microcosms to inhibit bacterial activity. In contrast, when fungal activity was inhibited through nystatin additions, {sup 14}C-hexadecane mineralisation ranged from 6.5 {+-} 0.2 to 35.8 {+-} 3.8% after 98 days depending on the supplied amendment. Bacteria inhibition with sodium azide resulted in a reduction in bacterial diversity (33-37%) compared to microcosms supplemented with nystatin or microcosms without inhibitory supplements. However, alkB bacterial groups were undetected in sodium azide supplemented microcosms, highlighting the important role of this bacterial group in {sup 14}C-hexadecane mineralisation. - Highlights: Black-Right-Pointing-Pointer The roles of different microbial groups in hydrocarbon mineralisation was assessed. Black-Right-Pointing-Pointer Inhibiting fungal growth did not affect {sup 14}C-hexadecane mineralisation. Black-Right-Pointing-Pointer Inhibiting bacterial growth resulted in negligible {sup 14}C-hexadecane mineralisation. Black-Right-Pointing-Pointer alkB bacterial groups were undetected in sodium azide supplemented microcosms. Black

  4. Comparing the impacts of sediment-bound bifenthrin on aquatic macroinvertebrates in laboratory bioassays and field microcosms.

    Science.gov (United States)

    Boyle, Rhianna L; Hoak, Molly N; Pettigrove, Vincent J; Hoffmann, Ary A; Long, Sara M

    2016-11-01

    We conducted two laboratory bioassays and two field microcosm exposures with bifenthrin (a synthetic pyrethroid) in order to evaluate the capacity of single-species laboratory bioassays to predict lethal and sublethal impacts on aquatic invertebrates in microcosms. For the laboratory species, Chironomus tepperi, larval survival was reduced by 24% at 53.66µg/g OC, while adult emergence was reduced at concentrations of 33.33µg/g OC and higher, with a 61% decrease at 77.78µg/g OC and no emergence at 126.67µg/g OC. The abundance of several other microcosm taxa was reduced in the microcosms at a similar concentration range (33.33µg/g OC and above), however there was no impact on the abundance of the congeneric species, Chironomus oppositus. The differences in impacts between test systems were potentially due to both differing species sensitivity and the interaction of ambient temperature with bifenthrin toxicity. Bifenthrin also was associated with early emergence of Chironomus sp. in both test systems, at concentrations of 10µg/g OC and higher (laboratory) and 43.90µg/g OC (microcosm), and with a significant decrease in the proportion of C. oppositus males in a microcosm. These findings indicate that while laboratory bioassays accurately predict many impacts in the field, there are some limitations to the predictive capacity of these tests. Copyright © 2016 Elsevier Inc. All rights reserved.

  5. Biodegradation of polycyclic aromatic hydrocarbons (PAH) from crude oil in sandy-beach microcosms

    International Nuclear Information System (INIS)

    Lepo, J.E.; Cripe, C.R.

    2000-01-01

    Experiments were conducted using triplicate microcosm chambers for each treatment of a simulated oil spill on a beach. The treatments were sterile control, 10 ppm of a rhamnolipid biosurfactant added to the seawater and bi-weekly inoculation of the microcosms with two marine bacteria that produce biosurfactants but degrade only n-alkanes. The results showed that raw seawater cycled through the microcosms over a 30-day period led to a substantial depletion of fluorene, phenanthrene, and other polyaromatic hydrocarbons (PAH). It was not possible to detect PAH in pooled test system effluents. The oiled-beach microcosms were run with sterile synthetic seawater to differentiate between wash out and degradation. Depletion of n-alkanes was noticed in the systems inoculated with the alkane-degrading microbes and virtually all the aromatic analytes were recoverable from the oiled sand. The other two treatments permitted the recovery of all the analytes (PAH or alkanes). Under aerobic conditions, the biodegradation by microorganisms indigenous to natural seawater supported that lower molecular weight PAH were substantially depleted, but not the n-alkanes under similar conditions. 16 refs., 4 tabs., 1 fig

  6. Bioremediation of soils contaminated with fuel oils

    International Nuclear Information System (INIS)

    Baker, K.H.; Herson, D.S.; Vercellon-Smith, P.; Cronce, R.C.

    1991-01-01

    A utility company discovered soils in their plant contaminated with diesel fuel and related fuel oils (300-450 ppm). The soils were excavated and removed to a concrete pad for treatment. The authors conducted laboratory studies to determine if biostimulation or bioaugmentation would be appropriate for treating the soils. Microbial numbers and soil respiration were monitored in microcosms supplemented with: (1) organic nutrients, (2) inorganic nutrients, and (3) inorganic nutrients plus additional adapted microorganisms. Their studies indicated that biostimulation via the addition of inorganic nutrients would be appropriate at this site. Treatment cells for the contaminated soils were constructed. Initial data indicates that a 35% reduction in the concentration of contaminants has occurred within the first month of operation

  7. Influence of erythromycin A on the microbial populations in aquaculture sediment microcosms

    International Nuclear Information System (INIS)

    Kim, Yong-Hak; Cerniglia, Carl E.

    2005-01-01

    Degradation of erythromycin A was studied using two sediment samples obtained from the salmon and trout hatchery sites at Hupp Springs (HS) and Goldendale (GD), Washington, United States. The former site had been treated for 3 years with erythromycin-medicated feed prior to the experiments, and the latter site had not been treated with any antibiotic for at least 6 years. The two sediment microcosms treated with either N-[methyl- 14 C]erythromycin A or [1,3,5,7,9,11,13- 14 C]erythromycin A showed S-curves for erythromycin A mineralization with a prolonged lag time of 120 days, except for GD microcosms treated with [1,3,5,7,9,11,13- 14 C]erythromycin A. We proposed a simplified logistic model to interpret the mineralization curves under the assumption of the low densities of initial populations metabolizing erythromycin A. The model was helpful for knowing the biological potential for erythromycin A degradation in sediments. Although erythromycin A added to the two sediment microcosms did not significantly alter the numbers of total viable aerobic bacteria or erythromycin-resistant bacteria, it affected the bacterial composition. The influence on the bacterial composition appeared to be greater in GD microcosms without pre-exposure to antibiotics. PCR-RFLP and DNA sequence analyses of the 16S ribosomal RNA gene and the erythromycin esterase (ere) gene revealed that ereA type 2 (ereA2) was present in potentially erythromycin-degrading Pseudomonas spp. strains GD100, GD200, HS100, HS200 and HS300, isolated from erythromycin-treated and non-treated GD and HS microcosms. Erythromycin A appeared to influence the development and proliferation of strain GD200, possibly via the lateral gene transfer of ereA2

  8. Influence of erythromycin A on the microbial populations in aquaculture sediment microcosms

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Yong-Hak [Division of Microbiology, National Center for Toxicological Research, US Food and Drug Administration, 3900 NCTR Road, Jefferson, AR 72079 (United States)]. E-mail: yhkim660628@hotmail.com; Cerniglia, Carl E. [Division of Microbiology, National Center for Toxicological Research, US Food and Drug Administration, 3900 NCTR Road, Jefferson, AR 72079 (United States)]. E-mail: ccerniglia@nctr.fda.gov

    2005-07-01

    Degradation of erythromycin A was studied using two sediment samples obtained from the salmon and trout hatchery sites at Hupp Springs (HS) and Goldendale (GD), Washington, United States. The former site had been treated for 3 years with erythromycin-medicated feed prior to the experiments, and the latter site had not been treated with any antibiotic for at least 6 years. The two sediment microcosms treated with either N-[methyl-{sup 14}C]erythromycin A or [1,3,5,7,9,11,13-{sup 14}C]erythromycin A showed S-curves for erythromycin A mineralization with a prolonged lag time of 120 days, except for GD microcosms treated with [1,3,5,7,9,11,13-{sup 14}C]erythromycin A. We proposed a simplified logistic model to interpret the mineralization curves under the assumption of the low densities of initial populations metabolizing erythromycin A. The model was helpful for knowing the biological potential for erythromycin A degradation in sediments. Although erythromycin A added to the two sediment microcosms did not significantly alter the numbers of total viable aerobic bacteria or erythromycin-resistant bacteria, it affected the bacterial composition. The influence on the bacterial composition appeared to be greater in GD microcosms without pre-exposure to antibiotics. PCR-RFLP and DNA sequence analyses of the 16S ribosomal RNA gene and the erythromycin esterase (ere) gene revealed that ereA type 2 (ereA2) was present in potentially erythromycin-degrading Pseudomonas spp. strains GD100, GD200, HS100, HS200 and HS300, isolated from erythromycin-treated and non-treated GD and HS microcosms. Erythromycin A appeared to influence the development and proliferation of strain GD200, possibly via the lateral gene transfer of ereA2.

  9. The influence of natural and artificial precipitation on the moisture status of a black soil from the Marchfeld area, as determined by the neutron moisture meter

    International Nuclear Information System (INIS)

    Haunold, F.; Roetzer, H.; Storchschnabel, G.; Blochberger, K.

    1980-01-01

    Changes in the moisture status of a Chernozem in the Marchfeld were measured throughout a vegetation period using a neutron moisture meter from Berthold. Increasing the strength of the irradiation source from 30 to 100 mCi and changing the analog to digital recording, greatly improved the precision of measurement. The installation of the measuring tubes was possible only in soils free of stones. Measurements were made down to 140 cm depth. The field was planted with cabbage. One part of the field received normal rain only, one part received 40 mm of artificial precipitation when the moisture content of the soil in 40 cm depth dropped below 50 % of the water holding capacity. The third part received 3 times that amount of water. The changes in water status of the soil as a consequence of natural and artificial rain were very well recorded by the instrument. Therefore this method is very suitable for the measurement and control of the moisture status of the soil, in order to make proper decisions for the exact time of artificial irrigation. (author)

  10. Evaluation of design parameters in soil-structure systems through artificial intelligence

    International Nuclear Information System (INIS)

    Cremonini, M.G.; Vardanega, C.; Parvis, E.

    1989-01-01

    This study refers to development of an artificial intelligence tool to evaluate design parameters for a soil-structure system as the foundations of Class 1 buildings of a nuclear power plant (NPP). This is based on an expert analysis of a large amount of information, collected during a comprehensive program of site investigations and laboratory tests and stored on a computer data-bank. The methodology comprises the following steps: organization of the available information on the site characteristics in a data-base; implementation and extensive use of a specific knowledge based expert system (KBES) devoted to both the analysis, interpretation and check of the information in the data-base, and to the evaluation of the design parameters; determination of effective access criteria to the data-base, for purposes of reordering the information and extracting design properties from a large number of experimental data; development of design profiles for both index properties and strength/strain parameters; and final evaluation of the design parameters. Results are obtained in the form of: local and general site stratigraphy; summarized soil index properties, detailing the site setting; static and dynamic stress-strain parameters, G/G max behavior and damping factors; condolidation parameters and OCR ratio; spatial distribution of parameters on site area; identification of specific local conditions; and cross correlation of parameters, thus covering the whole range of design parameters for NPP soil-structure systems

  11. Assessing impediments to hydrocarbon biodegradation in weathered contaminated soils.

    Science.gov (United States)

    Adetutu, Eric; Weber, John; Aleer, Sam; Dandie, Catherine E; Aburto-Medina, Arturo; Ball, Andrew S; Juhasz, Albert L

    2013-10-15

    In this study, impediments to hydrocarbon biodegradation in contaminated soils were assessed using chemical and molecular methodologies. Two long-term hydrocarbon contaminated soils were utilised which were similar in physico-chemical properties but differed in the extent of hydrocarbon (C10-C40) contamination (S1: 16.5 g kg(-1); S2: 68.9 g kg(-1)). Under enhanced natural attenuation (ENA) conditions, hydrocarbon biodegradation was observed in S1 microcosms (26.4% reduction in C10-C40 hydrocarbons), however, ENA was unable to stimulate degradation in S2. Although eubacterial communities (PCR-DGGE analysis) were similar for both soils, the alkB bacterial community was less diverse in S2 presumably due to impacts associated with elevated hydrocarbons. When hydrocarbon bioaccessibility was assessed using HP-β-CD extraction, large residual concentrations remained in the soil following the extraction procedure. However, when linear regression models were used to predict the endpoints of hydrocarbon degradation, there was no significant difference (P>0.05) between HP-β-CD predicted and microcosm measured biodegradation endpoints. This data suggested that the lack of hydrocarbon degradation in S2 resulted primarily from limited hydrocarbon bioavailability. Copyright © 2013 Elsevier B.V. All rights reserved.

  12. Impact of biostimulated redox processes on metal dynamics in an iron-rich creek soil of a former uranium mining area.

    Science.gov (United States)

    Burkhardt, Eva-Maria; Akob, Denise M; Bischoff, Sebastian; Sitte, Jana; Kostka, Joel E; Banerjee, Dipanjan; Scheinost, Andreas C; Küsel, Kirsten

    2010-01-01

    Understanding the dynamics of metals and radionuclides in soil environments is necessary for evaluating risks to pristine sites. An iron-rich creek soil of a former uranium-mining district (Ronneburg, Germany) showed high porewater concentrations of heavy metals and radionuclides. Thus, this study aims to (i) evaluate metal dynamics during terminal electron accepting processes (TEAPs) and (ii) characterize active microbial populations in biostimulated soil microcosms using a stable isotope probing (SIP) approach. In biostimulated soil slurries, concentrations of soluble Co, Ni, Zn, As, and unexpectedly U increased during Fe(III)-reduction. This suggests that there was a release of sorbed metals and As during reductive dissolution of Fe(III)-oxides. Subsequent sulfate-reduction was concurrent with a decrease of U, Co, Ni, and Zn concentrations. The relative contribution of U(IV) in the solid phase changed from 18.5 to 88.7% after incubation. The active Fe(III)-reducing population was dominated by delta-Proteobacteria (Geobacter) in (13)C-ethanol amended microcosms. A more diverse community was present in (13)C-lactate amended microcosms including taxa related to Acidobacteria, Firmicutes, delta-Proteobacteria, and beta-Proteobacteria. Our results suggested that biostimulated Fe(III)-reducing communities facilitated the release of metals including U to groundwater which is in contrast to other studies.

  13. Characterization of bacterial functional groups and microbial activity in microcosms with glyphosate application

    Science.gov (United States)

    Moyano, Sofia; Bonetto, Mariana; Baigorria, Tomas; Pegoraro, Vanesa; Ortiz, Jimena; Faggioli, Valeria; Conde, Belen; Cazorla, Cristian; Boccolini, Monica

    2017-04-01

    Glyphosate is a worldwide used herbicide as c. 90% of transgenic crops are tolerant to it. Microbial degradation of glyphosate molecule in soil is considered the most important process that determines its persistence in the environment. However, the impact of this herbicide on target groups of soil biota remains poorly understood. Our objective was to characterize the abundance of bacterial groups and global microbial activity, under controlled conditions with application of increasing doses of glyphosate. A bioassay was carried out in microcosms using an agricultural soil (Typic Argiudoll) with registered history of glyphosate application from National Institute of Agricultural Technology (INTA, EEA Marcos Juarez, Argentina). Glyphosate of commercial formulation (74.7%) was used and the following treatments were evaluated: Soil without glyphosate (control), and Soil with doses equivalent to 1.12 and 11.2 kg ai ha-1. Microbiological parameters were estimated at 3, 7, 14 and 21 days after herbicide application by counting heterotrophic, cellulolytic, nitrogen fixing (N), and nitrifying bacteria; and fluorescein diacetate hydrolysis (FDA), microbial respiration (MR) and microbial biomass (C-BM). The N cycle related bacteria showed greater sensitivity to glyphosate with significant increases in abundance. On the other hand the C cycle parameters were strongly conditioned by the time elapsed since the application of the herbicide, as did the MR. The FDA declined with the highest dose, while the C-BM was not affected. Therefore, we conclude that in the studied experimental conditions glyphosate stimulated bacterial growth (i.e. target abundances) representing a source of N, C and nutrients. On the other hand, enzymatic activity (FDA) decreased when glyphosate was applied in the highest dose, whereas, it had no effect on the MR nor C-BM, which could be attributable to the organic matter content of the soil. However, future research in field conditions is necessary, for

  14. Ecotoxicological Impact of the Bioherbicide Leptospermone on the Microbial Community of Two Arable Soils

    Science.gov (United States)

    Romdhane, Sana; Devers-Lamrani, Marion; Barthelmebs, Lise; Calvayrac, Christophe; Bertrand, Cédric; Cooper, Jean-François; Dayan, Franck E.; Martin-Laurent, Fabrice

    2016-01-01

    The ecotoxicological impact of leptospermone, a β-triketone bioherbicide, on the bacterial community of two arable soils was investigated. Soil microcosms were exposed to 0 × (control), 1 × or 10 × recommended dose of leptospermone. The β-triketone was moderately adsorbed to both soils (i.e.,: Kfa ~ 1.2 and Koc ~ 140 mL g−1). Its dissipation was lower in sterilized than in unsterilized soils suggesting that it was mainly influenced by biotic factors. Within 45 days, leptospermone disappeared almost entirely from one of the two soils (i.e., DT50 < 10 days), while 25% remained in the other. The composition of the microbial community assessed by qPCR targeting 11 microbial groups was found to be significantly modified in soil microcosms exposed to leptospermone. Pyrosequencing of 16S rRNA gene amplicons showed a shift in the bacterial community structure and a significant impact of leptospermone on the diversity of the soil bacterial community. Changes in the composition, and in the α- and β-diversity of microbial community were transient in the soil able to fully dissipate the leptospermone, but were persistent in the soil where β-triketone remained. To conclude the bacterial community of the two soils was sensitive to leptospermone and its resilience was observed only when leptospermone was fully dissipated. PMID:27252691

  15. Sunlight inactivation of Escherichia coli in waste stabilization microcosms in a sahelian region (Ouagadougou, Burkina Faso).

    Science.gov (United States)

    Maïga, Ynoussa; Denyigba, Kokou; Wethe, Joseph; Ouattara, Aboubakar Sidiki

    2009-02-09

    Experiments on sunlight inactivation of Escherichia coli were conducted from November 2006 to June 2007 in eight outdoors microcosms with different depths filled with maturation pond wastewater in order to determine pond depth influence on sunlight inactivation of E. coli. The long-term aim was to maximize sunlight inactivation of waterborne pathogens in waste stabilization ponds (WSPs) in sahelian regions where number of sunny days enable longer exposure of wastewater to sunlight. The inactivation was followed during daylight from 8.00 h to 17.00 h and during the night. Sunlight inactivation rates (K(S)), as a function of cumulative global solar radiation (insolation), were 16 and 24 times higher than the corresponding dark inactivation (K(D)) rates, respectively in cold and warm season. In warm season, E. coli was inactivated far more rapidly. Inactivation of E. coli follows the evolution of radiation during the day. In shallow depth microcosms, E. coli was inactivated far more rapidly than in high depth microcosms. The physical chemical parameters [pH, dissolved oxygen (DO)] of microcosms water were higher in shallow depth microcosms than in high depth microcosms suggesting a synergistic effect of sunlight and these parameters to damage E. coli. To increase the efficiency of the elimination of waterborne bacteria, the use of maturation ponds with intermediate depths (0.4m) would be advisable in view of the high temperatures and thus evaporation recorded in sahelian regions.

  16. Metagenomic insights into effects of spent engine oil perturbation on the microbial community composition and function in a tropical agricultural soil.

    Science.gov (United States)

    Salam, Lateef B; Obayori, Sunday O; Nwaokorie, Francisca O; Suleiman, Aisha; Mustapha, Raheemat

    2017-03-01

    Analyzing the microbial community structure and functions become imperative for ecological processes. To understand the impact of spent engine oil (SEO) contamination on microbial community structure of an agricultural soil, soil microcosms designated 1S (agricultural soil) and AB1 (agricultural soil polluted with SEO) were set up. Metagenomic DNA extracted from the soil microcosms and sequenced using Miseq Illumina sequencing were analyzed for their taxonomic and functional properties. Taxonomic profiling of the two microcosms by MG-RAST revealed the dominance of Actinobacteria (23.36%) and Proteobacteria (52.46%) phyla in 1S and AB1 with preponderance of Streptomyces (12.83%) and Gemmatimonas (10.20%) in 1S and Geodermatophilus (26.24%), Burkholderia (15.40%), and Pseudomonas (12.72%) in AB1, respectively. Our results showed that soil microbial diversity significantly decreased in AB1. Further assignment of the metagenomic reads to MG-RAST, Cluster of Orthologous Groups (COG) of proteins, Kyoto Encyclopedia of Genes and Genomes (KEGG), GhostKOALA, and NCBI's CDD hits revealed diverse metabolic potentials of the autochthonous microbial community. It also revealed the adaptation of the community to various environmental stressors such as hydrocarbon hydrophobicity, heavy metal toxicity, oxidative stress, nutrient starvation, and C/N/P imbalance. To the best of our knowledge, this is the first study that investigates the effect of SEO perturbation on soil microbial communities through Illumina sequencing. The results indicated that SEO contamination significantly affects soil microbial community structure and functions leading to massive loss of nonhydrocarbon degrading indigenous microbiota and enrichment of hydrocarbonoclastic organisms such as members of Proteobacteria and Actinobacteria.

  17. The effect of tributyltin-oxide on earthworms, springtails, and plants in artificial and natural soils.

    Science.gov (United States)

    Römbke, J; Jänsch, S; Junker, T; Pohl, B; Scheffczyk, A; Schallnass, H-J

    2007-05-01

    Chemical bioavailability in Organisation for Economic Co-operation and Development (OECD) artificial soil can contrast with bioavailability in natural soils and produce ecotoxicologic benchmarks that are not representative of species' exposure conditions in the field. Initially, reproduction and growth of earthworm and Collembolan species, and early seedling growth of a dicotyledonous plant species, in nine natural soils (with a wide range of physicochemical properties) and in OECD soil were evaluated. Soils that supported reproduction and growth of the test species were then used to investigate the toxicity of tributyltin-oxide (TBT-O). Natural soils caused greater toxicity of TBT-O to earthworms (EC(50) values varied from 0.5 to 4.7 mg/kg soil dry weight [dw]) compared with toxicity in OECD soil (EC(50) = 13.4 mg/kg dw). Collembolans were less sensitive to TBT-O than earthworms in natural soils, with EC(50) values ranging from 23.4 to 177.8 mg/kg dw. In contrast, the toxicity of TBT-O to collembolans in OECD soil (EC(50) = 104.0 mg/kg dw) was within the range of EC(50) values in natural soils. Phytotoxicity tests revealed even greater difference between the effects in natural soils (EC(50) values ranged from 10.7 to 189.2 mg/kg dw) and in OECD soil (EC(50) = 535.5 mg/kg dw) compared with results of the earthworm tests. Studies also showed that EC(50) values were a more robust end point compared with EC(10) values based on comparisons of coefficients of variation. These results show that toxicity testing should include studies with natural soils in addition to OECD soil to better reflect exposure conditions in the field.

  18. The Earthworm Eisenia fetida Can Help Desalinate a Coastal Saline Soil in Tianjin, North China.

    Directory of Open Access Journals (Sweden)

    Tao Zhang

    Full Text Available A laboratory microcosm experiment was conducted to determine whether the earthworm Eisenia fetida could survive in a saline soil from a field site in North China, and an experiment using response surface methodology was conducted at that field site to quantify the effects of E. fetida and green waste compost (GWC on the salt content of the soil. The microcosm results showed that E. fetida survived in GWC-amended saline soil and increased the contents of humic acid, available N, and available P in the GWC-amended soil. The data from the field experiment were described by the following second-order model: [Formula in text], where y is the decrease in soil salinity (g of salt per kg of dry soil relative to the untreated control, x1 is the number of E. fetida added per m2, and x2 is the quantity of GWC added in kg per m2. The model predicted that the total salt content of the saline soil would decrease by > 2 g kg(-1 (p<0.05 when 29-90 individuals m-2 of E. fetida and 6.1-15.0 kg m(-2 of GWC were applied. We conclude that the use of E. fetida for soil desalination is promising and warrants additional investigation.

  19. Transport and degradation of pesticides in a biopurification system under variable flux, part I: A microcosm study

    Energy Technology Data Exchange (ETDEWEB)

    De Wilde, Tineke, E-mail: dewilde.tineke@gmail.co [Laboratory of Crop Protection Chemistry, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000 Ghent (Belgium); Spanoghe, Pieter [Laboratory of Crop Protection Chemistry, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000 Ghent (Belgium); Ryckeboer, Jaak [Division Soil and Water Management, Faculty of Bioscience Engineering, Catholic University Leuven, Kasteelpark Arenberg 20, B-3001 Leuven (Belgium); Jaeken, Peter [PCF-Royal Research Station of Gorsem, De Brede Akker 13, 3800 Sint-Truiden (Belgium); Springael, Dirk [Division Soil and Water Management, Faculty of Bioscience Engineering, Catholic University Leuven, Kasteelpark Arenberg 20, B-3001 Leuven (Belgium)

    2010-10-15

    The efficiency of a biopurification system, developed to treat pesticide contaminated water, is to a large extent determined by the chemical and hydraulic load. Insight into the behaviour of pesticides under different fluxes is necessary. The behaviour of metalaxyl, bentazone, linuron, isoproturon and metamitron was studied under three different fluxes with or without the presence of pesticide-primed soil in column experiments. Due to the time-dependent sorption process, retention of the pesticides with intermediate mobility was significantly influenced by the flux. The higher the flux, the slower pesticides will be sorbed, which resulted in a lower retention. Degradation of the intermediate mobile pesticides was also submissive to variations in flux. An increase in flux, led to a decrease in retention, which in turn decreased the opportunity time for biodegradation. Finally, the presence of pesticide-primed soil was only beneficial for the degradation of metalaxyl. - Retention and degradation of pesticides in microcosms liable to different fluxes.

  20. Azolla-anabaena-bacteria system as a natural microcosm

    Science.gov (United States)

    Carrapico, Francisco J.

    2002-02-01

    Azolla is an aquatic fern that contains a permanent endosymbiotic prokaryotic community (cyanobacteria and bacteria) inside of the cavity in the leaf dorsal lobe of the pteridophyte. This is a unique situation and can be seen as a microcosm inside of an organism and also can be considered a good example of a living model for biological and environmental studies. These symbionts are specific of this symbiosis and lives immobilized in a mucilaginous fibrillar network, which fills part of the cavity. The symbionts works as immobilized organisms in a natural system that can be used as a model for biotechnological research and in biologically based life support systems. The nature and the complexity of this system is simultaneously a reference and a challenge for the research in the communication between the two levels of nature organization (microcosm and mesocosm), and can also be used as a reference for the design of new environmental engineered symbiotic systems that include man as a prelude to life in space.

  1. Microcosm: Mysteries of the Universe and of computing

    CERN Multimedia

    2003-01-01

    In the first week of December, two new exhibitions open in Microcosm: "Mysteries of the Universe" and "Computing@CERN". Ever wondered why the Universe is habitable? How many dimensions there are? Or indeed, where matter comes from? In Microcosm's new "Mysteries of the Universe" exhibition 20 CERN researchers reveal the question that intrigues them the most and why they find the search for answers so fascinating. The exhibition consists of 20 stories, told by the researchers themselves in one of 4 languages (English, French, German or Italian). Through their tales, the visitor can discover the essence of CERN - a curiosity to understand the mechanisms of a universe full of surprises, where many fundamental questions remain unresolved. With their diverse nationalities and experience, the participants reveal not only the variety of physics research underway at CERN, but also the experiments yet to come and indeed an element of the international collaboration so essential to the laboratory. In the words of on...

  2. Identification of copper-induced genes in Pseudomonas fluorescens and use of a reporter strain to monitor bioavailable copper in soil

    DEFF Research Database (Denmark)

    Tom-Petersen, Andreas; Hosbond, Carsten; Nybroe, Ole

    2001-01-01

    -amended soil microcosms in a concentration-dependent manner. The chelator EDTA reduced the availability of Cu to P. fluorescens in soil. This showed that complex-bound Cu is not necessarily available to bacteria, We compared chemical analysis of soluble Cu and the reporter assay on soil solutions from Cu-containing......-Cu15, the gene interrupted by the transposon encoded a protein carrying a Cu-binding domain but with low homology to known proteins. DF57-Cu15 was the most suitable Cu reporter due to its high specific response and tolerance to Cu in pure culture. DF57-Cu15 responded to soil solutions from Cu...... soil microcosms supplemented with either manure or straw. Organic matter increased the amount of soluble Cu but not the amount of bioavailable Cu. Probably, Cu binds with high affinity to organic constituents in pig manure or barley straw. Hence, determination of soluble Cu by chemical analysis cannot...

  3. Dynamics of Soil Bacterial Communities in Response to Repeated Application of Manure Containing Sulfadiazine

    OpenAIRE

    Ding, Guo-Chun; Radl, Viviane; Schloter-Hai, Brigitte; Jechalke, Sven; Heuer, Holger; Smalla, Kornelia; Schloter, Michael

    2014-01-01

    Large amounts of manure have been applied to arable soils as fertilizer worldwide. Manure is often contaminated with veterinary antibiotics which enter the soil together with antibiotic resistant bacteria. However, little information is available regarding the main responders of bacterial communities in soil affected by repeated inputs of antibiotics via manure. In this study, a microcosm experiment was performed with two concentrations of the antibiotic sulfadiazine (SDZ) which were applied ...

  4. Is it clean or contaminated soil? Using petrogenic versus biogenic GC-FID chromatogram patterns to mathematically resolve false petroleum hydrocarbon detections in clean organic soils: a crude oil-spiked peat microcosm experiment.

    Science.gov (United States)

    Kelly-Hooper, Francine; Farwell, Andrea J; Pike, Glenna; Kennedy, Jocelyn; Wang, Zhendi; Grunsky, Eric C; Dixon, D George

    2013-10-01

    The Canadian Council of Ministers of the Environment (CCME) reference method for the Canada-wide standard (CWS) for petroleum hydrocarbon (PHC) in soil provides chemistry analysis standards and guidelines for the management of contaminated sites. However, these methods can coextract natural biogenic organic compounds (BOCs) from organic soils, causing false exceedences of toxicity guidelines. The present 300-d microcosm experiment used CWS PHC tier 1 soil extraction and gas chromatography-flame ionization detector (GC-FID) analysis to develop a new tier 2 mathematical approach to resolving this problem. Carbon fractions F2 (C10-C16), F3 (C16-C34), and F4 (>C34) as well as subfractions F3a (C16-C22) and F3b (C22-C34) were studied in peat and sand spiked once with Federated crude oil. These carbon ranges were also studied in 14 light to heavy crude oils. The F3 range in the clean peat was dominated by F3b, whereas the crude oils had approximately equal F3a and F3b distributions. The F2 was nondetectable in the clean peat but was a significant component in crude oil. The crude oil–spiked peat had elevated F2 and F3a distributions. The BOC-adjusted PHC F3 calculation estimated the true PHC concentrations in the spiked peat. The F2:F3b ratio of less than 0.10 indicated PHC absence in the clean peat, and the ratio of greater than or equal to 0.10 indicated PHC presence in the spiked peat and sand. Validation studies are required to confirm whether this new tier 2 approach is applicable to real-case scenarios. Potential adoption of this approach could minimize unnecessary ecological disruptions of thousands of peatlands throughout Canada while also saving millions of dollars in management costs. © 2013 SETAC.

  5. Effects of the fungicide metiram in outdoor freshwater microcosms: responses of invertebrates, primany producers and microbes

    NARCIS (Netherlands)

    Ronghua, Lin; Buijse-Bogdan, L.L.; Rocha Dimitrov, M.; Dohmen, P.; Kosol, Sujitra; Maltby, L.; Roessink, I.; Sinkeldam, J.A.; Smidt, H.; Wijngaarden, van R.P.A.; Brock, T.C.M.

    2012-01-01

    The ecological impact of the dithiocarbamate fungicide metiram was studied in outdoor freshwater microcosms, consisting of 14 enclosures placed in an experimental ditch. The microcosms were treated three times (interval 7 days) with the formulated product BAS 222 28F (Polyram®). Intended metiram

  6. Ecological effects of various toxic agents on the aquatic microcosm in comparison with acute ionizing radiation

    International Nuclear Information System (INIS)

    Fuma, S.; Ishii, N.; Takeda, H.; Miyamoto, K.; Yanagisawa, K.; Ichimasa, Y.; Saito, M.; Kawabata, Z.; Polikarpov, G.G.

    2003-01-01

    The purpose of this study was an evaluation of the effect levels of various toxic agents compared with acute doses of ionizing radiation for the experimental model ecosystem, i.e., microcosm mimicking aquatic microbial communities. For this purpose, the authors used the microcosm consisting of populations of the flagellate alga Euglena gracilis as a producer, the ciliate protozoan Tetrahymena thermophila as a consumer and the bacterium Escherichia coli as a decomposer. Effects of aluminum and copper on the microcosm were investigated in this study, while effects of γ-rays, ultraviolet radiation, acidification, manganese, nickel and gadolinium were reported in previous studies. The microcosm could detect not only the direct effects of these agents but also the community-level effects due to the interspecies interactions or the interactions between organisms and toxic agents. The authors evaluated doses or concentrations of each toxic agent which had the following effects on the microcosm: (1) no effects; (2) recognizable effects, i.e., decrease or increase in the cell densities of at least one species; (3) severe effects, i.e., extinction of one or two species; and (4) destructive effects, i.e., extinction of all species. The resulting effects data will contribute to an ecological risk assessment of the toxic agents compared with acute doses of ionizing radiation

  7. Identification of soil bacteria able to degrade phenanthrene bound to a hydrophobic sorbent in situ

    Energy Technology Data Exchange (ETDEWEB)

    Regonne, Raïssa Kom [CEA, DSV/iRTSV, Chimie et Biologie des Métaux, 38054, Grenoble cedex 9 (France); Univ. Grenoble Alpes and CNRS, UMR 5249, 38042, Grenoble (France); Laboratoire de Substances Actives et Pollution, ENSAI, Université de Ngaoundéré, BP 455, Ngaoundéré (Cameroon); Martin, Florence [CEA, DSV/iRTSV, Chimie et Biologie des Métaux, 38054, Grenoble cedex 9 (France); Univ. Grenoble Alpes and CNRS, UMR 5249, 38042, Grenoble (France); Mbawala, Augustin [Laboratoire de Microbiologie, ENSAI, Université de Ngaoundéré, BP 455, Ngaoundéré (Cameroon); Ngassoum, Martin Benoît [Laboratoire de Substances Actives et Pollution, ENSAI, Université de Ngaoundéré, BP 455, Ngaoundéré (Cameroon); Jouanneau, Yves [CEA, DSV/iRTSV, Chimie et Biologie des Métaux, 38054, Grenoble cedex 9 (France); Univ. Grenoble Alpes and CNRS, UMR 5249, 38042, Grenoble (France)

    2013-09-15

    Efficient bioremediation of PAH-contaminated sites is limited by the hydrophobic character and poor bioavailability of pollutants. In this study, stable isotope probing (SIP) was implemented to track bacteria that can degrade PAHs adsorbed on hydrophobic sorbents. Temperate and tropical soils were incubated with {sup 13}C-labeled phenanthrene, supplied by spiking or coated onto membranes. Phenanthrene mineralization was faster in microcosms with PAH-coated membranes than in microcosms containing spiked soil. Upon incubation with temperate soil, phenanthrene degraders found in the biofilms that formed on coated membranes were mainly identified as Sphingomonadaceae and Actinobacteria. In the tropical soil, uncultured Rhodocyclaceae dominated degraders bound to membranes. Accordingly, ring-hydroxylating dioxygenase sequences recovered from this soil matched PAH-specific dioxygenase genes recently found in Rhodocyclaceae. Hence, our SIP approach allowed the detection of novel degraders, mostly uncultured, which differ from those detected after soil spiking, but might play a key role in the bioremediation of PAH-polluted soils. -- Highlights: •Soil bacteria with the ability to degrade sorbent-bound PAHs were investigated. •In soil, membrane-bound phenanthrene was readily mineralized. •PAH degraders found in biofilms were different in temperate and tropical soils. •Uncultured Rhodocyclaceae were dominant phenanthrene degraders in the tropical soil. •PAH-specific ring-hydroxylating dioxygenase sequences were identified in soil DNA. -- Bacteria able to degrade PAHs bound to a hydrophobic sorbent were mainly identified as uncultured Rhodocyclaceae and Sphingomonadaceae in polluted soils from tropical and temperate area, respectively.

  8. Identification of soil bacteria able to degrade phenanthrene bound to a hydrophobic sorbent in situ

    International Nuclear Information System (INIS)

    Regonne, Raïssa Kom; Martin, Florence; Mbawala, Augustin; Ngassoum, Martin Benoît; Jouanneau, Yves

    2013-01-01

    Efficient bioremediation of PAH-contaminated sites is limited by the hydrophobic character and poor bioavailability of pollutants. In this study, stable isotope probing (SIP) was implemented to track bacteria that can degrade PAHs adsorbed on hydrophobic sorbents. Temperate and tropical soils were incubated with 13 C-labeled phenanthrene, supplied by spiking or coated onto membranes. Phenanthrene mineralization was faster in microcosms with PAH-coated membranes than in microcosms containing spiked soil. Upon incubation with temperate soil, phenanthrene degraders found in the biofilms that formed on coated membranes were mainly identified as Sphingomonadaceae and Actinobacteria. In the tropical soil, uncultured Rhodocyclaceae dominated degraders bound to membranes. Accordingly, ring-hydroxylating dioxygenase sequences recovered from this soil matched PAH-specific dioxygenase genes recently found in Rhodocyclaceae. Hence, our SIP approach allowed the detection of novel degraders, mostly uncultured, which differ from those detected after soil spiking, but might play a key role in the bioremediation of PAH-polluted soils. -- Highlights: •Soil bacteria with the ability to degrade sorbent-bound PAHs were investigated. •In soil, membrane-bound phenanthrene was readily mineralized. •PAH degraders found in biofilms were different in temperate and tropical soils. •Uncultured Rhodocyclaceae were dominant phenanthrene degraders in the tropical soil. •PAH-specific ring-hydroxylating dioxygenase sequences were identified in soil DNA. -- Bacteria able to degrade PAHs bound to a hydrophobic sorbent were mainly identified as uncultured Rhodocyclaceae and Sphingomonadaceae in polluted soils from tropical and temperate area, respectively

  9. High-resolution synchrotron imaging shows that root hairs influence rhizosphere soil structure formation.

    Science.gov (United States)

    Koebernick, Nicolai; Daly, Keith R; Keyes, Samuel D; George, Timothy S; Brown, Lawrie K; Raffan, Annette; Cooper, Laura J; Naveed, Muhammad; Bengough, Anthony G; Sinclair, Ian; Hallett, Paul D; Roose, Tiina

    2017-10-01

    In this paper, we provide direct evidence of the importance of root hairs on pore structure development at the root-soil interface during the early stage of crop establishment. This was achieved by use of high-resolution (c. 5 μm) synchrotron radiation computed tomography (SRCT) to visualise both the structure of root hairs and the soil pore structure in plant-soil microcosms. Two contrasting genotypes of barley (Hordeum vulgare), with and without root hairs, were grown for 8 d in microcosms packed with sandy loam soil at 1.2 g cm -3 dry bulk density. Root hairs were visualised within air-filled pore spaces, but not in the fine-textured soil regions. We found that the genotype with root hairs significantly altered the porosity and connectivity of the detectable pore space (> 5 μm) in the rhizosphere, as compared with the no-hair mutants. Both genotypes showed decreasing pore space between 0.8 and 0.1 mm from the root surface. Interestingly the root-hair-bearing genotype had a significantly greater soil pore volume-fraction at the root-soil interface. Effects of pore structure on diffusion and permeability were estimated to be functionally insignificant under saturated conditions when simulated using image-based modelling. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

  10. Effects of microcosm scaling and food resources on growth and survival of larval Culex pipiens

    Directory of Open Access Journals (Sweden)

    Paradise Christopher J

    2001-08-01

    Full Text Available Abstract Background We used a simple experimental design to test for the effects of microcosm scaling on the growth and survival of the mosquito, Culex pipiens. Microcosm and mesocosm studies are commonly used in ecology, and there is often an assumption that scaling doesn't affect experimental outcomes. The assumption is implicit in the design; choice of mesocosms may be arbitrary or based on convenience or cost. We tested the hypothesis that scale would influence larvae due to depth and surface area effects. Larvae were predicted to perform poorly in microcosms that were both deep and had small openings, due to buildup of waste products, less exchange with the environment, and increased competition. To determine if the choice of scale affected responses to other factors, we independently varied leaf litter quantity, whose effects on mosquitoes are well known. Results We found adverse effects of both a lower wall surface area and lower horizontal surface area, but microcosm scale interacted with resources such that C. pipiens is affected by habitat size only when food resources are scarce. At low resource levels mosquitoes were fewer, but larger, in microcosms with smaller horizontal surface area and greater depth than in microcosms with greater horizontal surface area and shallower depth. Microcosms with more vertical surface area/volume often produced larger mosquitoes; more food may have been available since mosquitoes browse on walls and other substrates for food. Conclusions The interaction between habitat size and food abundance is consequential to aquatic animals, and choice of scale in experiments may affect results. Varying surface area and depth causes the scale effect, with small horizontal surface area and large depth decreasing matter exchange with the surrounding environment. In addition, fewer resources leads to less leaf surface area, and the effects of varying surface area will be greater under conditions of limiting resources

  11. Degradation of 2,4-DB in Argentinean agricultural soils with high humic matter content.

    Science.gov (United States)

    Cuadrado, Virginia; Merini, Luciano J; Flocco, Cecilia G; Giulietti, Ana M

    2008-01-01

    The dissipation of 4-(2,4-dichlorophenoxy) butyric acid (2,4-DB) in high-humic-matter-containing soils from agricultural fields of the Argentinean Humid Pampa region was studied, employing soil microcosms under different experimental conditions. The added herbicide was dissipated almost completely by soils with and without history of herbicide use by day 28. At 500 ppm, both soils showed the same degradation rates; but at 5-ppm concentration, the chronically exposed soil demonstrated a faster degradation of the herbicide. 2,4-DB addition produced increases in herbicide-degrading bacteria of three and 1.5 orders of magnitude in soils with and without history of herbicide use, respectively, in microcosms with 5 ppm. At 500-ppm concentration, the increase in 2,4-DB degraders was five orders of magnitude after 14 days, independent of the history of herbicide use. No differences were observed in either 2,4-DB degradation rates or in degrader bacteria numbers in the presence and absence of alfalfa plants, in spite of some differential characteristics in patterns of 2,4-DB metabolite accumulation. The main factor affecting 2,4-DB degradation rate would be the history of herbicide use, as a consequence of the adaptation of the indigenous microflora to the presence of herbicides in the field.

  12. Preliminary identification of the bioremediation limiting factors of a clay bearing soil contaminated with crude oil

    OpenAIRE

    Rizzo, Andréa C. L.; Cunha, Claudia D. da; Santos, Ronaldo L. C.; Santos, Renata M.; Magalhães, Hugo M.; Leite, Selma G. F.; Soriano, Adriana U.

    2008-01-01

    Bioremediation is an attractive alternative to treat soils contaminated with petroleum hydrocarbons. However, the effectiveness of biodegradation process can be limited by both contaminant characteristics and its bioavailability in soil. This work aims at establishing a preliminary procedure to identify the main factor (hydrocarbon recalcitrance or its bioavailability) that impairs the biodegradation, possibly resulting in low remediation efficiencies. Tests in soil microcosms were carried ou...

  13. Effects of acute {gamma}-irradiation on community structure of the aquatic microbial microcosm

    Energy Technology Data Exchange (ETDEWEB)

    Fuma, Shoichi, E-mail: fuma@nirs.go.j [Environmental Radiation Effects Research Group, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555 (Japan); Ishii, Nobuyoshi; Takeda, Hiroshi [Environmental Radiation Effects Research Group, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555 (Japan); Doi, Kazutaka; Kawaguchi, Isao [Regulatory Sciences Research Group, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555 (Japan); Shikano, Shuichi [Center for Northeast Asian Studies, Tohoku University, 41 Kawauchi, Aoba-ku, Sendai, Miyagi 980-8576 (Japan); Tanaka, Nobuyuki [Marine Environment Section, Water and Soil Environment Division, National Institute for Environmental Studies, 16-2 Onogawa, Tsukuba, Ibaraki 305-8506 (Japan); Inamori, Yuhei [Faculty of Symbiotic Systems Science, Fukushima University, 1 Kanayagawa, Fukushima 960-1296 (Japan)

    2010-11-15

    To characterise indirect effects of ionising radiation on aquatic microbial communities, effects of acute {gamma}-irradiation were investigated in a microcosm consisting of populations of green algae (Chlorella sp. and Scenedesmus sp.) and a blue-green alga (Tolypothrix sp.) as producer; a ciliate protozoan (Cyclidium glaucoma), rotifers (Lecane sp. and Philodina sp.) and an oligochaete (Aeolosoma hemprichi) as consumer; and more than four species of bacteria as decomposers. Population changes in the constituent organisms were observed over 160 days after irradiation. Prokaryotic community structure was also examined by denaturing gradient gel electrophoresis (DGGE) of 16S rDNA. Principle response curve analysis revealed that the populations of the microcosm as a whole were not significantly affected at 100 Gy while they were adversely affected at 500-5000 Gy in a dose-dependent manner. However, some effects on each population, including each bacterial population detected by DGGE, did not depend on radiation doses, and some populations in the irradiated microcosm were larger than those of the control. These unexpected results are regarded as indirect effects through interspecies interactions, and possible mechanisms are proposed originating from population changes in other organisms co-existing in the microcosm. For example, some indirect effects on consumers and decomposers likely arose from interspecies competition within each trophic level. It is also likely that prey-predator relationships between producers and consumers caused some indirect effects on producers.

  14. Arsenic mobilization and immobilization in paddy soils

    Science.gov (United States)

    Kappler, A.; Hohmann, C.; Zhu, Y. G.; Morin, G.

    2010-05-01

    Arsenic is oftentimes of geogenic origin and in many cases bound to iron(III) minerals. Iron(III)-reducing bacteria can harvest energy by coupling the oxidation of organic or inorganic electron donors to the reduction of Fe(III). This process leads either to dissolution of Fe(III)-containing minerals and thus to a release of the arsenic into the environment or to secondary Fe-mineral formation and immobilisation of arsenic. Additionally, aerobic and anaerobic iron(II)-oxidizing bacteria have the potential to co-precipitate or sorb arsenic during iron(II) oxidation at neutral pH that is usually followed by iron(III) mineral precipitation. We are currently investigating arsenic immobilization by Fe(III)-reducing bacteria and arsenic co-precipitation and immobilization by anaerobic iron(II)-oxidizing bacteria in batch, microcosm and rice pot experiments. Co-precipitation batch experiments with pure cultures of nitrate-dependent Fe(II)-oxidizing bacteria are used to quantify the amount of arsenic that can be immobilized during microbial iron mineral precipitation, to identify the minerals formed and to analyze the arsenic binding environment in the precipitates. Microcosm and rice pot experiments are set-up with arsenic-contaminated rice paddy soil. The microorganisms (either the native microbial population or the soil amended with the nitrate-dependent iron(II)-oxidizing Acidovorax sp. strain BoFeN1) are stimulated either with iron(II), nitrate, or oxygen. Dissolved and solid-phase arsenic and iron are quantified. Iron and arsenic speciation and redox state in batch and microcosm experiments are determined by LC-ICP-MS and synchrotron-based methods (EXAFS, XANES).

  15. Study of the dynamic of Bacillus species during of oil contaminated soil by PCR-DGGE

    OpenAIRE

    Mahmoud Shavandi; Nima Zamanian; Azam Haddadi

    2018-01-01

    Introduction: Bioremediation is an effective, inexpensive and environmental friendly manner for removing oil pollutions. Studding the biodiversity of indigenous microorganisms and their function is very important for bioremediation strategy selection and performance. This study was aimed to investigate the rule of Bacillus species in bioremediation of diesel contaminated soil. Materials and Methods: Soil microcosms were prepared by adding 2 and 4% (W/W) of diesel to the soil. A control mic...

  16. Transfers and transformations of zinc in flow-through wetland microcosms.

    Science.gov (United States)

    Gillespie, W B; Hawkins, W B; Rodgers, J H; Cano, M L; Dorn, P B

    1999-06-01

    Two microcosm-scale wetlands (570-liter containers) were integratively designed and constructed to investigate transfers and transformations of zinc associated with an aqueous matrix, and to provide future design parameters for pilot-scale constructed wetlands. The fundamental design of these wetland microcosms was based on biogeochemical principles regulating fate and transformations of zinc (pH, redox, etc.). Each wetland consisted of a 45-cm hydrosoil depth inundated with 25 cm of water, and planted with Scirpus californicus. Zinc ( approximately 2 mg/liter) as ZnCl2 was amended to each wetland for 62 days. Individual wetland hydraulic retention times (HRT) were approximately 24 h. Total recoverable zinc was measured daily in microcosm inflow and outflows, and zinc concentrations in hydrosoil and S. californicus tissue were measured pre- and post-treatment. Ceriodaphnia dubia and Pimephales promelas7-day aqueous toxicity tests were performed on wetland inflows and outflows, and Hyalella azteca whole sediment toxicity tests (10-day) were performed pre- and post-treatment. Approximately 75% of total recoverable zinc was transferred from the water column. Toxicity decreased from inflow to outflow based on 7-day C. dubia tests, and survival of H. azteca in hydrosoil was >80%. Data illustrate the ability of integratively designed wetlands to transfer and sequester zinc from the water column while concomitantly decreasing associated toxicity. Copyright 1999 Academic Press.

  17. Evaluation of zinc oxide nanoparticle toxicity in sludge products applied to agricultural soil using multispecies soil systems.

    Science.gov (United States)

    Fernández, María Dolores; Alonso-Blázquez, María Nieves; García-Gómez, Concepción; Babin, Mar

    2014-11-01

    To study the environmental impact of nanoparticles, the sludges of wastewater (WWTS) and water treatment (WTS) plants enriched with ZnO nanoparticles were added to agricultural soil, and the toxic effects of the nanoparticles were studied using a microcosm system based on the soil. The WWTS treated soils were characterised by statistically significant decreases (psoils, significant reductions (psoil phosphatase enzymatic activity decreased significantly (psoils), along with statistically significant dose-related inhibition responses on total glutathione cell content, and statistically significant dose-related induction responses on the glutathione S-transferase enzyme activity and the reactive oxygen species generation on the RTG-2 fish cell line. Copyright © 2014 Elsevier B.V. All rights reserved.

  18. Conditions for effective removal of pyrene from an artificially contaminated soil using Pseudomonas aeruginosa 57SJ rhamnolipids

    International Nuclear Information System (INIS)

    Bordas, Francois; Lafrance, Pierre; Villemur, Richard

    2005-01-01

    The efficacy of a new rhamnolipid biosurfactants mixture to enhance the removal of pyrene from a soil artificially contaminated was investigated. The molar solubilization ratio (MSR) and the partition coefficient between the micelles and water (log K m ) were found to be 7.5 x 10 -3 and 5.7, respectively. From soil column studies, the pyrene removal increased linearly with the concentration of the injected biosurfactants solution above the effective critical micellar concentration (0.4 g L -1 ). Flushing with a 5.0 g L -1 biosurfactants solution increased the pyrene concentration in the effluent by 178 times. At high biosurfactants' concentrations (2.5 and 5.0 g L -1 ), the cumulative pyrene recovery reached 70%. This pyrene remobilization takes place independently of the soil organic carbon solubilization. This study provides a combination of batch and column experiments in order to find the conditions for effective soil remediation using a new rhamnolipids mixture. - The potential of newly isolated biosurfactants to mobilize PAHs from contaminated soils was evaluated from the determination in dynamic conditions of their effective critical micellar concentration

  19. Lakes and rivers as microcosms, version 2.0

    Directory of Open Access Journals (Sweden)

    David G. Jenkins

    2013-08-01

    Full Text Available Limnology has been greatly influenced by The Lake as a Microcosm (Forbes, 1887, which described a holistic focus on the internal machinations of singular, island-like aquatic ecosystems. I consider three persistent influences of The Lake as a Microcosm: as an organizing paradigm for the teaching of limnology relative to its practice; the idea that inland waters are like islands, and the replicability of types of inland waters. Based on inspection of recent peer-reviewed literature and 32 limnology texts, we teach limnology according to Forbes but do not practice it in that holistic context. Instead, we practice limnology as aquatic ecology. Based on novel analyses of species-area relationships for 275 inland waters and 392 islands, inland waters are more like continental habitat patches than islands; the island metaphor is poetic but not accurate. Based on a quantitative review of beta diversity (40 data sets representing 10,576 inland waters and 26 data sets representing 1529 terrestrial sites, aquatic systems are no more replicable than are terrestrial systems; a typological approach to limnology is no more justified than it is in terrestrial systems. I conclude that a former distinction between limnology and aquatic ecology no longer applies, and that we should define limnology as the ecology of inland waters. Also, we should not consider lakes and rivers as islands that represent other systems of the same type, but should consider them as open, interactive habitat patches that vary according to their geology and biogeography. I suggest modern limnology operates according to 3 paradigms, which combine to form 3 broad limnological disciplines and establish a basis for a plural, interactive view of lakes and rivers as microcosms. This model of modern limnology may help better connect it to ecology and biogeography and help limnology be even more relevant to science and society.

  20. Changes in plants and soil microorganisms in an artificial CO2 leakage experiment

    Science.gov (United States)

    Ko, D.; Kim, Y.; Yoo, G.; Chung, H.

    2017-12-01

    Carbon capture and storage (CCS) technology is considered to be a promising technology that can mitigate global climate change by greatly reducing anthropogenic CO2 emissions. Despite the advantage, potential risks of leakage of CO2 from CO2 storage site exists, which may negatively affect organisms in the soil ecosystems. To investigate the short- term impacts of geological CO2 leakage on soil ecosystem, we conducted an artificial CO2 leakage experiment in a greenhouse where plants and soils were exposed to high levels of CO2. Corn was grown in a 1:1 (v/v) mixture of potting and field soil, and 99.99% CO2 gas was injected at a flow rate of 0.1l min-1 for 30 days whereas no gas was injected to control pots. Changes in plant growth, soil characteristics, and bacterial community composition were determined. Mean soil CO2 and O2 concentrations were 31.6% and 15.6%, respectively, in CO2-injected pots, while they were at ambient levels in control pots. The shoot and root length, and chlorophyll contents decreased in CO2-injected pots by 19.4%, 9.7%, and 11.9%, respectively. In addition, the concentration of available N such as NH4+-N and NO3-N was 83.3 to 90.8% higher in CO2-injected pots than in control pots likely due to inhibited plant growth. The results of bacterial 16S rRNA gene pyrosequencing showed that the major phyla in the soils were Actinobacteria, Proteobacteria, Acidobacteria, Chloroflexi, and Saccharibacteria_TM7. Among these, the relative abundance of Proteobacteria was lower in CO2-injected than in control pots (28.8% vs. 34.1%) likely due to decreased C availability. On the other hand, the abundance of Saccharibacteria_TM7 was significantly higher in CO2-injected than in control pots (6.0% vs. 1.3%). The changes in soil mineral N and microorganisms in response to injected CO2 was likely due to inhibited plant growth under high soil CO2 conditions, and further studies are needed to determine if belowground CO2 leakage from CO2 storage sites can directly

  1. Survival study of enterotoxigenic Escherichia colistrain in seawater and wastewater microcosms.

    Science.gov (United States)

    Boukef Ben Omrane, I; El Bour, M; Mejri, S; Mraouna, R; Got, P; Troussellier, M; Boudabous, A

    2011-01-01

    In order to survey osmotic and oligotrophic stress consequence on pathogenic enterobacteria discharged in marine areas, we examined enterotoxigenic Escherichia coli (ETEC) and a reference (Ecoli O126:B16) strains during their survival (47 days) in wastewater microcosms, submerged in natural seawater and maintained in laboratory conditions. The results revealed that the survival time for the two strains was prolonged when bacterial cells were previously incubated in wastewater, with less cellular membrane damage. In addition, the wild clinical E. coli strain showed a better survival capacity than the reference E. coli strain one. For both, we noted some modifications in biochemical profiles relatively to the initial state, notably when they were previously incubated in wastewater microcosm.

  2. Effects of Lactobacillus rhamnosus GG on saliva-derived microcosms

    NARCIS (Netherlands)

    Pham, L.C.; Hoogenkamp, M.A.; Exterkate, R.A.M.; Terefework, Z.; de Soet, J.J.; ten Cate, J.M.; Crielaard, W.; Zaura, E.

    2011-01-01

    Objective The probiotic strain Lactobacillus rhamnosus GG (LGG) is shown to hamper the presence of mutans streptococci in saliva and may have positive effects on oral health. We investigated the effects of LGG on the cariogenic potential and microbial composition of saliva-derived microcosms. Design

  3. Cadmium and lead availability for rapeseed grown on an artificial ISO soil

    International Nuclear Information System (INIS)

    Baryla, A.; Sahut, C.

    2000-01-01

    Accumulations of heavy metals in soils have become a major concern for food crop production. Of these metals, cadmium and lead are recognized as the most widespread elements, that are non-essential for plant growth. While the toxicity of these metals is often investigated on plants grown in nutrient solution, soil is a complex medium. Metals may be dissolved in the soil solution or chelated to carbonates, to oxides of iron or manganese, or to organic matter. This chemical state of the metal is important because it determines the availability of the metal for the crop. Yet its study is complicated by numerous factors (soil pH, temperature, humidity..) which modify this chemical equilibrium. To standardize the experiments, an artificially reconstituted soil was prepared from clay, sand and peat according to standards ISO 11268-1 (May 1994). Metals (lead and cadmium) were added as nitrate salts. Plants used were rapeseeds. Seeds were sown on 20 cm diameter pots and placed in a controlled growth chamber. At harvest, roots, leaves and stems were separated, dried, and mineralized with concentrated nitric acid. Sequential analysis of the soil was carried out to assess the chemical behavior of the cadmium. The chemical speciation of cadmium is shown. The metal is essentially soluble in the soil and poorly complexed to the organic matter. This indicates that contamination is recent and derives from metal salts; cadmium complexation to organic matter appears only after years of soil evolution. The metal is then essentially available for plants but equilibrium is established between the different forms. Plant growth is shown. Cadmium has a strong effect on biomass production at 50 μg / g in the soil. No toxic effect of lead was observed from 0 to 2000 μg / g in the soil, probably because lead is strongly complexed to the soil and less toxic for plants. Metal concentrations in plants after two months of growth are shown in Figures 4 and 5. Plant cadmium content reached 150

  4. Effects of Bacillus thuringiensis (Bt) corn on soil Folsomia fimetaria, Folsomia candida (Collembola), Hypoaspis aculeifer (Acarina) and Enchytraeus crypticus (Oligochaeta)

    DEFF Research Database (Denmark)

    Ke, X.; Krogh, P. H.

    The effects of the Cry1Ab toxin from Bacillus thuringiensis (corn variety Cascade Bt MON810 and DeKalb variety 618 Bt) were studied on survival and reproduction of the soil collembolan Folsomia fimetaria, Folsomia candida, the collembolan predator mite Hypoaspis aculeifer and enchytraeids....... There was a weak significant reduction by 30% on the reproduction of F. fimetaria fed Bt corn in Petri dishes for 21 days. Likewise there was a weak significant reduction by 40% of the reproduction of H. aculeifer by Bt corn in amounts corresponding to 20 g plant material kg-1 soil in the two species soil......-litter microcosm systems. There were no effects of Bt corn materials on the reproduction of F. fimetaria and E. crypticus in the single species soil-litter microcosms. No effects of Bt corn materials on mortality of all the 4 species were observed in all treatments. The tendency of effects of the Bt corn...

  5. Bisphenol A in artificial soil: Effects on growth, reproduction and immunity in earthworms.

    Science.gov (United States)

    Verdú, I; Trigo, D; Martínez-Guitarte, J L; Novo, M

    2018-01-01

    The application of biosolids in agricultural fields is increasing annually. They contain not only nutrients but also xenobiotics, such as Bisphenol A (BPA). These compounds are not regulated in the use of biosolids in agriculture, which highlights the need to assess their effects on soil life, of which earthworms are most abundant of the animal representatives. In this study the effect of BPA on life-history parameters, such as mortality, growth and reproduction, and on immunity, is evaluated for Dendrobaena veneta and Eisenia fetida. Sublethal concentrations were evaluated by a modified OECD artificial soil test. Decline in growth with increasing concentration of BPA was detected during the first two weeks and the opposite effect for the next two, although these differences were only significant at the highest concentration. Reproduction traits were only significantly different for E. fetida, for which the number of juveniles decreased at higher concentrations, thus showing different sensitivity in both species. By using a contact test, the potentially harmful effect of direct contact with BPA was shown to be much higher than in soil (resembling natural) conditions. Finally, results indicate that BPA may not affect the immune system of these animals, at least in terms of coelomocyte viability. Copyright © 2017 Elsevier Ltd. All rights reserved.

  6. Separation of soil respiration: a site-specific comparison of partition methods

    Science.gov (United States)

    Comeau, Louis-Pierre; Lai, Derrick Y. F.; Jinglan Cui, Jane; Farmer, Jenny

    2018-06-01

    Without accurate data on soil heterotrophic respiration (Rh), assessments of soil carbon (C) sequestration rate and C balance are challenging to produce. Accordingly, it is essential to determine the contribution of the different sources of the total soil CO2 efflux (Rs) in different ecosystems, but to date, there are still many uncertainties and unknowns regarding the soil respiration partitioning procedures currently available. This study compared the suitability and relative accuracy of five different Rs partitioning methods in a subtropical forest: (1) regression between root biomass and CO2 efflux, (2) lab incubations with minimally disturbed soil microcosm cores, (3) root exclusion bags with hand-sorted roots, (4) root exclusion bags with intact soil blocks and (5) soil δ13C-CO2 natural abundance. The relationship between Rh and soil moisture and temperature was also investigated. A qualitative evaluation table of the partition methods with five performance parameters was produced. The Rs was measured weekly from 3 February to 19 April 2017 and found to average 6.1 ± 0.3 Mg C ha-1 yr-1. During this period, the Rh measured with the in situ mesh bags with intact soil blocks and hand-sorted roots was estimated to contribute 49 ± 7 and 79 ± 3 % of Rs, respectively. The Rh percentages estimated with the root biomass regression, microcosm incubation and δ13C-CO2 natural abundance were 54 ± 41, 8-17 and 61 ± 39 %, respectively. Overall, no systematically superior or inferior Rs partition method was found. The paper discusses the strengths and weaknesses of each technique with the conclusion that combining two or more methods optimizes Rh assessment reliability.

  7. This summer, go behind-the-scenes of CERN in photos in the Microcosm

    CERN Multimedia

    2016-01-01

    Find out the best photos of the 2015 CERN Photowalk competition in the Microcosm.   Photo: Olivier Miche. The best photos taken at the 2015 CERN Photowalk competition are now exhibited in the Microcosm, for the whole summer period. Through this photographic exhibition, the visitors will be taken behind-the scenes of CERN, through the main workshop, the ISOLDE facility and the future accelerator Linac 4. They will also take a glimpse of the life on the CERN campus.

  8. Detection by denaturing gradient gel electrophoresis of ammonia-oxidizing bacteria in microcosms of crude oil-contaminated mangrove sediments.

    Science.gov (United States)

    dos Santos, A C F; Marques, E L S; Gross, E; Souza, S S; Dias, J C T; Brendel, M; Rezende, R P

    2012-01-27

    Currently, the effect of crude oil on ammonia-oxidizing bacterium communities from mangrove sediments is little understood. We studied the diversity of ammonia-oxidizing bacteria in mangrove microcosm experiments using mangrove sediments contaminated with 0.1, 0.5, 1, 2, and 5% crude oil as well as non-contaminated control and landfarm soil from near an oil refinery in Camamu Bay in Bahia, Brazil. The evolution of CO(2) production in all crude oil-contaminated microcosms showed potential for mineralization. Cluster analysis of denaturing gradient gel electrophoresis-derived samples generated with primers for gene amoA, which encodes the functional enzyme ammonia monooxygenase, showed differences in the sample contaminated with 5% compared to the other samples. Principal component analysis showed divergence of the non-contaminated samples from the 5% crude oil-contaminated sediment. A Venn diagram generated from the banding pattern of PCR-denaturing gradient gel electrophoresis was used to look for operational taxonomic units (OTUs) in common. Eight OTUs were found in non-contaminated sediments and in samples contaminated with 0.5, 1, or 2% crude oil. A Jaccard similarity index of 50% was found for samples contaminated with 0.1, 0.5, 1, and 2% crude oil. This is the first study that focuses on the impact of crude oil on the ammonia-oxidizing bacterium community in mangrove sediments from Camamu Bay.

  9. Minimal NOx emission by Lysinibacillus sphaericus in nutrient poor soil

    Directory of Open Access Journals (Sweden)

    Melissa Sánchez

    2018-06-01

    Full Text Available The aim of this study was to determine whether nitrogen dioxide emissions by Lysinibacillus sphaericus exist in nutrient poor soil. First, we evaluated the presence of two genes involved in denitrification (nosF and nosD by PCR screening of five strains of L. sphaericus (III (37, OT4b.49, OT4b.25, OT4b.31 and CBAM5. We then applied a bacterial consortium made up by L. sphaericus III (37 and OT4b.49 into closed microcosms of soil and with minimum salts medium (MSM supplemented with ammonia to measure the concentration of produced nitrogen dioxide over time. The assays with closed microcosms showed a minimum level of nitrogen dioxide over time. The nosF and nosD primers amplified the expected fragment for the five strains and the sequenced nosF and nosD PCR product showed an ATPase domain and a copper-binding domain respectively, which was consistent with the function of these genes. The basal emission of nitrogen dioxide by L. sphaericus in soil is coupled to its ability to enhance the nitrogen bioavailability for soils deficient in nutrients. Therefore, our results indicate that this microorganism can be considered as a good candidate to validate the low emission of NOx in field and in the future as an alternative for biofertilization.

  10. Inverse estimation of soil hydraulic properties and water repellency following artificially induced drought stress

    Directory of Open Access Journals (Sweden)

    Filipović Vilim

    2018-06-01

    Full Text Available Global climate change is projected to continue and result in prolonged and more intense droughts, which can increase soil water repellency (SWR. To be able to estimate the consequences of SWR on vadose zone hydrology, it is important to determine soil hydraulic properties (SHP. Sequential modeling using HYDRUS (2D/3D was performed on an experimental field site with artificially imposed drought scenarios (moderately M and severely S stressed and a control plot. First, inverse modeling was performed for SHP estimation based on water and ethanol infiltration experimental data, followed by model validation on one selected irrigation event. Finally, hillslope modeling was performed to assess water balance for 2014. Results suggest that prolonged dry periods can increase soil water repellency. Inverse modeling was successfully performed for infiltrating liquids, water and ethanol, with R2 and model efficiency (E values both > 0.9. SHP derived from the ethanol measurements showed large differences in van Genuchten-Mualem (VGM parameters for the M and S plots compared to water infiltration experiments. SWR resulted in large saturated hydraulic conductivity (Ks decrease on the M and S scenarios. After validation of SHP on water content measurements during a selected irrigation event, one year simulations (2014 showed that water repellency increases surface runoff in non-structured soils at hillslopes.

  11. Comparison of Pattern Recognition, Artificial Neural Network and Pedotransfer Functions for Estimation of Soil Water Parameters

    Directory of Open Access Journals (Sweden)

    Amir LAKZIAN

    2010-09-01

    Full Text Available This paper presents the comparison of three different approaches to estimate soil water content at defined values of soil water potential based on selected parameters of soil solid phase. Forty different sampling locations in northeast of Iran were selected and undisturbed samples were taken to measure the water content at field capacity (FC, -33 kPa, and permanent wilting point (PWP, -1500 kPa. At each location solid particle of each sample including the percentage of sand, silt and clay were measured. Organic carbon percentage and soil texture were also determined for each soil sample at each location. Three different techniques including pattern recognition approach (k nearest neighbour, k-NN, Artificial Neural Network (ANN and pedotransfer functions (PTF were used to predict the soil water at each sampling location. Mean square deviation (MSD and its components, index of agreement (d, root mean square difference (RMSD and normalized RMSD (RMSDr were used to evaluate the performance of all the three approaches. Our results showed that k-NN and PTF performed better than ANN in prediction of water content at both FC and PWP matric potential. Various statistics criteria for simulation performance also indicated that between kNN and PTF, the former, predicted water content at PWP more accurate than PTF, however both approach showed a similar accuracy to predict water content at FC.

  12. Vertical Distribution and Estimated Doses from Artificial Radionuclides in Soil Samples around the Chernobyl Nuclear Power Plant and the Semipalatinsk Nuclear Testing Site

    Science.gov (United States)

    Taira, Yasuyuki; Hayashida, Naomi; Tsuchiya, Rimi; Yamaguchi, Hitoshi; Takahashi, Jumpei; Kazlovsky, Alexander; Urazalin, Marat; Rakhypbekov, Tolebay; Yamashita, Shunichi; Takamura, Noboru

    2013-01-01

    For the current on-site evaluation of the environmental contamination and contributory external exposure after the accident at the Chernobyl Nuclear Power Plant (CNPP) and the nuclear tests at the Semipalatinsk Nuclear Testing Site (SNTS), the concentrations of artificial radionuclides in soil samples from each area were analyzed by gamma spectrometry. Four artificial radionuclides (241Am, 134Cs, 137Cs, and 60Co) were detected in surface soil around CNPP, whereas seven artificial radionuclides (241Am, 57Co, 137Cs, 95Zr, 95Nb, 58Co, and 60Co) were detected in surface soil around SNTS. Effective doses around CNPP were over the public dose limit of 1 mSv/y (International Commission on Radiological Protection, 1991). These levels in a contaminated area 12 km from Unit 4 were high, whereas levels in a decontaminated area 12 km from Unit 4 and another contaminated area 15 km from Unit 4 were comparatively low. On the other hand, the effective doses around SNTS were below the public dose limit. These findings suggest that the environmental contamination and effective doses on the ground definitely decrease with decontamination such as removing surface soil, although the effective doses of the sampling points around CNPP in the present study were all over the public dose limit. Thus, the remediation of soil as a countermeasure could be an extremely effective method not only for areas around CNPP and SNTS but also for areas around the Fukushima Dai-ichi Nuclear Power Plant (FNPP), and external exposure levels will be certainly reduced. Long-term follow-up of environmental monitoring around CNPP, SNTS, and FNPP, as well as evaluation of the health effects in the population residing around these areas, could contribute to radiation safety and reduce unnecessary exposure to the public. PMID:23469013

  13. Vertical distribution and estimated doses from artificial radionuclides in soil samples around the Chernobyl nuclear power plant and the Semipalatinsk nuclear testing site.

    Directory of Open Access Journals (Sweden)

    Yasuyuki Taira

    Full Text Available For the current on-site evaluation of the environmental contamination and contributory external exposure after the accident at the Chernobyl Nuclear Power Plant (CNPP and the nuclear tests at the Semipalatinsk Nuclear Testing Site (SNTS, the concentrations of artificial radionuclides in soil samples from each area were analyzed by gamma spectrometry. Four artificial radionuclides ((241Am, (134Cs, (137Cs, and (60Co were detected in surface soil around CNPP, whereas seven artificial radionuclides ((241Am, (57Co, (137Cs, (95Zr, (95Nb, (58Co, and (60Co were detected in surface soil around SNTS. Effective doses around CNPP were over the public dose limit of 1 mSv/y (International Commission on Radiological Protection, 1991. These levels in a contaminated area 12 km from Unit 4 were high, whereas levels in a decontaminated area 12 km from Unit 4 and another contaminated area 15 km from Unit 4 were comparatively low. On the other hand, the effective doses around SNTS were below the public dose limit. These findings suggest that the environmental contamination and effective doses on the ground definitely decrease with decontamination such as removing surface soil, although the effective doses of the sampling points around CNPP in the present study were all over the public dose limit. Thus, the remediation of soil as a countermeasure could be an extremely effective method not only for areas around CNPP and SNTS but also for areas around the Fukushima Dai-ichi Nuclear Power Plant (FNPP, and external exposure levels will be certainly reduced. Long-term follow-up of environmental monitoring around CNPP, SNTS, and FNPP, as well as evaluation of the health effects in the population residing around these areas, could contribute to radiation safety and reduce unnecessary exposure to the public.

  14. Vertical distribution and estimated doses from artificial radionuclides in soil samples around the Chernobyl nuclear power plant and the Semipalatinsk nuclear testing site.

    Science.gov (United States)

    Taira, Yasuyuki; Hayashida, Naomi; Tsuchiya, Rimi; Yamaguchi, Hitoshi; Takahashi, Jumpei; Kazlovsky, Alexander; Urazalin, Marat; Rakhypbekov, Tolebay; Yamashita, Shunichi; Takamura, Noboru

    2013-01-01

    For the current on-site evaluation of the environmental contamination and contributory external exposure after the accident at the Chernobyl Nuclear Power Plant (CNPP) and the nuclear tests at the Semipalatinsk Nuclear Testing Site (SNTS), the concentrations of artificial radionuclides in soil samples from each area were analyzed by gamma spectrometry. Four artificial radionuclides ((241)Am, (134)Cs, (137)Cs, and (60)Co) were detected in surface soil around CNPP, whereas seven artificial radionuclides ((241)Am, (57)Co, (137)Cs, (95)Zr, (95)Nb, (58)Co, and (60)Co) were detected in surface soil around SNTS. Effective doses around CNPP were over the public dose limit of 1 mSv/y (International Commission on Radiological Protection, 1991). These levels in a contaminated area 12 km from Unit 4 were high, whereas levels in a decontaminated area 12 km from Unit 4 and another contaminated area 15 km from Unit 4 were comparatively low. On the other hand, the effective doses around SNTS were below the public dose limit. These findings suggest that the environmental contamination and effective doses on the ground definitely decrease with decontamination such as removing surface soil, although the effective doses of the sampling points around CNPP in the present study were all over the public dose limit. Thus, the remediation of soil as a countermeasure could be an extremely effective method not only for areas around CNPP and SNTS but also for areas around the Fukushima Dai-ichi Nuclear Power Plant (FNPP), and external exposure levels will be certainly reduced. Long-term follow-up of environmental monitoring around CNPP, SNTS, and FNPP, as well as evaluation of the health effects in the population residing around these areas, could contribute to radiation safety and reduce unnecessary exposure to the public.

  15. Conditions for effective removal of pyrene from an artificially contaminated soil using Pseudomonas aeruginosa 57SJ rhamnolipids

    Energy Technology Data Exchange (ETDEWEB)

    Bordas, Francois [Institut national de la recherche scientifique, Centre INRS-Eau-Terre-Environnement, Universite du Quebec, 2800 rue Einstein, C.P. 7500, Sainte-Foy, Quebec, G1V 4C7 (Canada)]. E-mail: francois.bordas@unilim.fr; Lafrance, Pierre [Institut national de la recherche scientifique, Centre Eau, Terre et Environnement, Universite du Quebec, 490, rue de la Couronne, Quebec, G1K 9A9 (Canada)]. E-mail: pierre_lafrance@inrs-ete.uquebec.ca; Villemur, Richard [Institut national de la recherche scientifique, Centre INRS-Institut Armand Frappier, Universite du Quebec, 531 bd des Prairies, Laval, Quebec, H7V 1B7 (Canada)]. E-mail: richard.villemur@inrs-iaf.uquebec.ca

    2005-11-15

    The efficacy of a new rhamnolipid biosurfactants mixture to enhance the removal of pyrene from a soil artificially contaminated was investigated. The molar solubilization ratio (MSR) and the partition coefficient between the micelles and water (log K {sub m}) were found to be 7.5 x 10{sup -3} and 5.7, respectively. From soil column studies, the pyrene removal increased linearly with the concentration of the injected biosurfactants solution above the effective critical micellar concentration (0.4 g L{sup -1}). Flushing with a 5.0 g L{sup -1} biosurfactants solution increased the pyrene concentration in the effluent by 178 times. At high biosurfactants' concentrations (2.5 and 5.0 g L{sup -1}), the cumulative pyrene recovery reached 70%. This pyrene remobilization takes place independently of the soil organic carbon solubilization. This study provides a combination of batch and column experiments in order to find the conditions for effective soil remediation using a new rhamnolipids mixture. - The potential of newly isolated biosurfactants to mobilize PAHs from contaminated soils was evaluated from the determination in dynamic conditions of their effective critical micellar concentration.

  16. Raingarden Soil Bacteria Community Response to Lab Simulated Salt-Enriched Artificial Stormwater

    Science.gov (United States)

    Endreny, T. A.

    2014-12-01

    Cold climate cities with green infrastructure depend on soil bacteria to remove nutrients from road salt-enriched stormwater. Our research examined how bacterial communities in laboratory columns containing bioretention media responded to varying concentrations of salt exposure from artificial stormwater and the effect of bacteria and salt on column effluent concentrations. We used a factorial design with two bacteria treatments (sterile, nonsterile) and three salt concentrations (935, 315, and 80 ppm), including a deionized water control. Columns were repeatedly saturated with stormwater or deionized and then drained throughout 5 wk, with the last week of effluent analyzed for water chemistry. To examine bacterial communities, we extracted DNA from column bioretention media at time 0 and at week 5 and used molecular profiling techniques to examine bacterial community changes. We found that bacterial community taxa changed between time 0 and week 5 and that there was significant separation between taxa among salt treatments. Bacteria evenness was significantly affected by stormwater treatment, but there were no differences in bacterial richness or diversity. Soil bacteria and salt treatments had a significant effect on the effluent concentration of NO3, PO4, Cu, Pb, and Zn based on ANOVA tests. The presence of bacteria reduced effluent NO3 and Zn concentrations by as much as 150 and 25%, respectively, while having a mixed effect on effluent PO4 concentrations. Our results demonstrate how stormwater can affect bacterial communities and how the presence of soil bacteria improves pollutant removal by green infrastructure.

  17. Numerical Analysis of Soil Settlement Prediction and Its Application In Large-Scale Marine Reclamation Artificial Island Project

    Directory of Open Access Journals (Sweden)

    Zhao Jie

    2017-11-01

    Full Text Available In an artificial island construction project based on the large-scale marine reclamation land, the soil settlement is a key to affect the late safe operation of the whole field. To analyze the factors of the soil settlement in a marine reclamation project, the SEM method in the soil micro-structural analysis method is used to test and study six soil samples such as the representative silt, mucky silty clay, silty clay and clay in the area. The structural characteristics that affect the soil settlement are obtained by observing the SEM charts at different depths. By combining numerical calculation method of Terzaghi’s one-dimensional and Biot’s two-dimensional consolidation theory, the one-dimensional and two-dimensional creep models are established and the numerical calculation results of two consolidation theories are compared in order to predict the maximum settlement of the soils 100 years after completion. The analysis results indicate that the micro-structural characteristics are the essential factor to affect the settlement in this area. Based on numerical analysis of one-dimensional and two-dimensional settlement, the settlement law and trend obtained by two numerical analysis method is similar. The analysis of this paper can provide reference and guidance to the project related to the marine reclamation land.

  18. [Development and succession of artificial biological soil crusts and water holding characteristics of topsoil].

    Science.gov (United States)

    Wu, Li; Chen, Xiao-Guo; Zhang, Gao-Ke; Lan, Shu-Bin; Zhang, De-Lu; Hu, Chun-Xiang

    2014-03-01

    In order to understand the improving effects of cyanobacterial inoculation on water retention of topsoil in desert regions, this work focused on the development and succession of biological soil crusts and water holding characteristics of topsoil after cyanobacterial inoculation in Qubqi Desert. The results showed that after the artificial inoculation of desert cyanobacteria, algal crusts were quickly formed, and in some microenvironments direct succession of the algal crusts to moss crusts occurred after 2-3 years. With the development and succession of biological soil crusts, the topsoil biomass, polysaccharides content, crust thickness and porosity increased, while the soil bulk density decreased. At the same time, with crust development and succession, the topsoil texture became finer and the percents of fine soil particles including silt and clay contents increased, while the percents of coarse soil particles (sand content) decreased proportionately. In addition, it was found that with crust development and succession, the water holding capacity and water content of topsoil showed an increasing trend, namely: moss crust > algal crusts > shifting sand. The water content (or water holding capacity) in algal and moss crusts were 1.1-1.3 and 1.8-2.2 times of those in shifting sand, respectively. Correlation analysis showed that the water holding capacity and water content of topsoil were positively correlated with the crust biomass, polysaccharides content, thickness, bulk density, silt and clay content; while negatively correlated with the porosity and sand content. Furthermore, stepwise regression analysis showed that the main factor affecting water content was the clay content, while that affecting water holding capacity was the porosity.

  19. 77 FR 38282 - Final Test Guidelines; OCSPP 850 Series; Notice of Availability

    Science.gov (United States)

    2012-06-27

    ... Plants, Cyanobacteria, and Terrestrial Soil Core Microcosm. Group F--Field Test Data Reporting Guidelines...'' to ``Terrestrial and Aquatic Plants, Cyanobacteria, and Terrestrial Soil Core Microcosm Test... 850.5400) and OCSPP 850.4900 ``Terrestrial Soil-Core Microcosm Test'' (Public Draft OPPTS 850.2450...

  20. Biological soil crust formation under artificial vegetation effect and its properties in the Mugetan sandy land, northeastern Qinghai-Tibet Plateau

    Science.gov (United States)

    Li, Y. F.; Li, Z. W.; Jia, Y. H.; Zhang, K.

    2016-08-01

    Mugetan sandy land is an inland desertification area of about 2,065 km2 in the northeastern Qinghai-Tibet Plateau. In the ecological restoration region of the Mugetan sandy land, different crusts have formed under the action of vegetation in three types of sandy soil (i.e. semi-fixed sand dune, fixed sand dune and ancient fixed aeolian sandy soil). The surface sand particle distribution, mineral component and vegetation composition of moving sand dunes and three types of sandy soil were studied in 2010-2014 to analyze the biological crust formation properties in the Mugetan sandy land and the effects of artificial vegetation. Results from this study revealed that artificial vegetation increases the clay content and encourages the development of biological curst. The fine particles (i.e. clay and humus) of the surface layer of the sand dunes increased more than 15% ten years after the artificial vegetation planting, and further increased up to 20% after one hundred years. The interaction of clay, humus, and other fine particles formed the soil aggregate structure. Meanwhile, under the vegetation effect from the microbes, algae, and moss, the sand particles stuck together and a biological crust formed. The interconnection of the partial crusts caused the sand dunes to gradually be fixed as a whole. Maintaining the integrity of the biological crust plays a vital role in fixing the sand under the crust. The precipitation and temperature conditions in the Mugetan sandy land could satisfy the demand of biological crust formation and development. If rational vegetation measures are adopted in the region with moving sand dunes, the lichen-moss-algae biological curst will form after ten years, but it still takes more time for the sand dunes to reach the nutrient enrichment state. If the biological curst is partly broken due to human activities, reasonable closure and restoration measures can shorten the restoration time of the biological crust.

  1. Biodegradation of weathered polystyrene films in seawater microcosms

    OpenAIRE

    Syranidou, Evdokia; Karkanorachaki, Katerina; Amorotti, Filippo; Franchini, Martina; Repouskou, Eftychia; Kaliva, Maria; Vamvakaki, Maria; Kolvenbach, Boris; Fava, Fabio; Corvini, Philippe F.-X.; Kalogerakis, Nicolas

    2017-01-01

    A microcosm experiment was conducted at two phases in order to investigate the ability of indigenous consortia alone or bioaugmented to degrade weathered polystyrene (PS) films under simulated marine conditions. Viable populations were developed on PS surfaces in a time dependent way towards convergent biofilm communities, enriched with hydrocarbon and xenobiotics degradation genes. Members of Alphaproteobacteria and Gammaproteobacteria were highly enriched in the acclimated plastic associate...

  2. The response of earthworms (Eisenia fetida) and soil microbes to the crumb rubber material used in artificial turf fields.

    Science.gov (United States)

    Pochron, Sharon T; Fiorenza, Andrew; Sperl, Cassandra; Ledda, Brianne; Lawrence Patterson, Charles; Tucker, Clara C; Tucker, Wade; Ho, Yuwan Lisa; Panico, Nicholas

    2017-04-01

    Municipalities have been replacing grass fields with artificial turf, which uses crumb rubber infill made from recycled tires. Crumb rubber contains hydrocarbons, organic compounds, and heavy metals. Water runoff from crumb rubber fields contains heavy metals. These components can damage the environment. We contaminated topsoil with new crumb rubber and measured its impact on earthworms and soil microbes. Specifically, we compared soil microbe activity and earthworm health, survivorship, and longevity in heat and light stress under two soil regimes: clean topsoil and clean topsoil contaminated with crumb rubber. We then characterized levels of metals, nutrients, and micronutrients of both soil treatments and compared those to published New York soil background levels and to levels set by the New York State Department of Environmental Conservation (DEC) as remediation goals. We found that: 1) contaminated soil did not inhibit microbial respiration rates, 2) earthworm survivorship was not impacted by exposure to contaminated soil, 3) earthworms' ability to cope with heat and light stress remained unchanged after living in contaminated soil, but 4) earthworms living in contaminated soil gained 14% less body weight than did earthworms living in uncontaminated soil. We also found that, with the exception of zinc, heavy metals in our contaminated soil did not exceed the background levels found throughout New York State or the remediation targets set by the DEC. Published by Elsevier Ltd.

  3. Comparison of an assay for Dehalococcoides DNA and a microcosm study in predicting reductive dechlorination of chlorinated ethenes in the field

    International Nuclear Information System (INIS)

    Lu Xiaoxia; Wilson, John T.; Kampbell, Donald H.

    2009-01-01

    The study aims to compare the detection of 16S rRNA gene of Dehalococcoides species and the microcosm study for biotransformation in predicting reductive dechlorination of chlorinated ethenes in ground water at hazardous waste sites. A total of 72 ground water samples were collected from 12 PCE or TCE contaminated sites in the United States. The samples were analyzed and used to construct microcosms in the laboratory. The results showed that the presence of Dehalococcoides DNA was well associated with dechlorination to ethene in the field. Nearly half of the wells where Dehalococcoides DNA was detected had ethene as a dechlorination end product. In comparison, for ground water samples of 16 wells where ethene was detected, ethene was produced in 11 of the corresponding microcosms. For most microcosms, during two years of incubation, dechlorination was less extensive than that observed in the field. - Positive results of the assay for Dehalococcoides DNA and the microcosm study may suggest that reductive dechlorination is occurring in the field

  4. Impact of triphenyltin acetate in microcosms simulating floodplain lakes. II. Comparison of species sensitivity distributions between laboratory and semi-field.

    Science.gov (United States)

    Roessink, I; Belgers, J D M; Crum, S J H; van den Brink, P J; Brock, T C M

    2006-07-01

    The study objectives were to shed light on the types of freshwater organism that are sensitive to triphenyltin acetate (TPT) and to compare the laboratory and microcosm sensitivities of the invertebrate community. The responses of a wide array of freshwater taxa (including invertebrates, phytoplankton and macrophytes) from acute laboratory Single Species Tests (SST) were compared with the concentration-response relationships of aquatic populations in two types of freshwater microcosms. Representatives of several taxonomic groups of invertebrates, and several phytoplankton and vascular plant species proved to be sensitive to TPT, illustrating its diverse modes of toxic action. Statistically calculated ecological risk thresholds (HC5 values) based on 96 h laboratory EC50 values for invertebrates were 1.3 microg/l, while these values on the basis of microcosm-Species Sensitivity Distributions (SSD) for invertebrates in sampling weeks 2-8 after TPT treatment ranged from 0.2 to 0.6 microg/l based on nominal peak concentrations. Responses observed in the microcosms did not differ between system types and sampling dates, indicating that ecological threshold levels are not affected by different community structures including taxa sensitive to TPT. The laboratory-derived invertebrate SSD curve was less sensitive than the curves from the microcosms. Possible explanations for the more sensitive field response are delayed effects and/or additional chronic exposure via the food chain in the microcosms.

  5. Survival of Listeria monocytogenes in Soil Requires AgrA-Mediated Regulation.

    Science.gov (United States)

    Vivant, Anne-Laure; Garmyn, Dominique; Gal, Laurent; Hartmann, Alain; Piveteau, Pascal

    2015-08-01

    In a recent paper, we demonstrated that inactivation of the Agr system affects the patterns of survival of Listeria monocytogenes (A.-L. Vivant, D. Garmyn, L. Gal, and P. Piveteau, Front Cell Infect Microbiol 4:160, http://dx.doi.org/10.3389/fcimb.2014.00160). In this study, we investigated whether the Agr-mediated response is triggered during adaptation in soil, and we compared survival patterns in a set of 10 soils. The fate of the parental strain L. monocytogenes L9 (a rifampin-resistant mutant of L. monocytogenes EGD-e) and that of a ΔagrA deletion mutant were compared in a collection of 10 soil microcosms. The ΔagrA mutant displayed significantly reduced survival in these biotic soil microcosms, and differential transcriptome analyses showed large alterations of the transcriptome when AgrA was not functional, while the variations in the transcriptomes between the wild type and the ΔagrA deletion mutant were modest under abiotic conditions. Indeed, in biotic soil environments, 578 protein-coding genes and an extensive repertoire of noncoding RNAs (ncRNAs) were differentially transcribed. The transcription of genes coding for proteins involved in cell envelope and cellular processes, including the phosphotransferase system and ABC transporters, and proteins involved in resistance to antimicrobial peptides was affected. Under sterilized soil conditions, the differences were limited to 86 genes and 29 ncRNAs. These results suggest that the response regulator AgrA of the Agr communication system plays important roles during the saprophytic life of L. monocytogenes in soil. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

  6. Detection of a Reproducible, Single-Member Shift in Soil Bacterial Communities Exposed to Low Levels of Hydrogen▿

    Science.gov (United States)

    Osborne, Catherine A.; Peoples, Mark B.; Janssen, Peter H.

    2010-01-01

    Soil is exposed to hydrogen when symbiotic rhizobia in legume root nodules cannot recycle the hydrogen that is generated during nitrogen fixation. The hydrogen emitted is most likely taken up by free-living soil bacteria that use hydrogen as an energy source, though the bacteria that do this in situ remain unclear. In this study, we investigated the effect of hydrogen exposure on the bacteria of two different soils in a microcosm setup designed to simulate hydrogen-emitting root nodules. Although the size and overall composition of the soil bacterial community did not significantly alter after hydrogen exposure, one ribotype increased in relative abundance within each soil. This single-ribotype shift was identified by generating multiple terminal restriction fragment length polymorphism (T-RFLP) profiles of 16S rRNA genes from each soil sample, with gene sequence confirmation to identify terminal restriction fragments. The increased abundance of a single ribotype after hydrogen exposure, within an otherwise similar community, was found in replicate samples taken from each microcosm and was reproducible across replicate experiments. Similarly, only one member of the soil bacterial community increased in abundance in response to hydrogen exposure in soil surrounding the root nodules of field-grown soybean (Glycine max). The ribotypes that increased after hydrogen exposure in each soil system tested were all from known hydrogen-oxidizing lineages within the order Actinomycetales. We suggest that soil actinomycetes are important utilizers of hydrogen at relevant concentrations in soil and could be key contributors to soil's function as a sink in the global hydrogen cycle. PMID:20061453

  7. Artificial neural network application for predicting soil distribution coefficient of nickel

    International Nuclear Information System (INIS)

    Falamaki, Amin

    2013-01-01

    The distribution (or partition) coefficient (K d ) is an applicable parameter for modeling contaminant and radionuclide transport as well as risk analysis. Selection of this parameter may cause significant error in predicting the impacts of contaminant migration or site-remediation options. In this regards, various models were presented to predict K d values for different contaminants specially heavy metals and radionuclides. In this study, artificial neural network (ANN) is used to present simplified model for predicting K d of nickel. The main objective is to develop a more accurate model with a minimal number of parameters, which can be determined experimentally or select by review of different studies. In addition, the effects of training as well as the type of the network are considered. The K d values of Ni is strongly dependent on pH of the soil and mathematical relationships were presented between pH and K d of nickel recently. In this study, the same database of these presented models was used to verify that neural network may be more useful tools for predicting of K d . Two different types of ANN, multilayer perceptron and redial basis function, were used to investigate the effect of the network geometry on the results. In addition, each network was trained by 80 and 90% of the data and tested for 20 and 10% of the rest data. Then the results of the networks compared with the results of the mathematical models. Although the networks trained by 80 and 90% of the data the results show that all the networks predict with higher accuracy relative to mathematical models which were derived by 100% of data. More training of a network increases the accuracy of the network. Multilayer perceptron network used in this study predicts better than redial basis function network. - Highlights: ► Simplified models for predicting K d of nickel presented using artificial neural networks. ► Multilayer perceptron and redial basis function used to predict K d of nickel in

  8. Phytate addition to soil induces changes in the abundance and expression of Bacillus β-propeller phytase genes in the rhizosphere.

    Science.gov (United States)

    Jorquera, Milko A; Saavedra, Nicolás; Maruyama, Fumito; Richardson, Alan E; Crowley, David E; del C Catrilaf, Rosa; Henriquez, Evelyn J; de la Luz Mora, María

    2013-02-01

    Phytate-mineralizing rhizobacteria (PMR) perform an essential function for the mineralization of organic phosphorus but little is known about their ecology in soils and rhizosphere. In this study, PCR-based methods were developed for detection and quantification of the Bacillus β-propeller phytase (BPP) gene. Experiments were conducted to monitor the presence and persistence of a phytate-mineralizing strain, Bacillus sp. MQH19, after inoculation of soil microcosms and within the rhizosphere. The occurrence of the BPP gene in natural pasture soils from Chilean Andisols was also examined. The results showed that the Bacillus BPP gene was readily detected in sterile and nonsterile microcosms, and that the quantitative PCR (qPCR) methods could be used to monitor changes in the abundance of the BPP gene over time. Our results also show that the addition of phytate to nonsterile soils induced the expression of the BPP gene in the rhizosphere of ryegrass and the BPP gene was detected in all pasture soils sampled. This study shows that phytate addition soils induced changes in the abundance and expression of Bacillus BPP to genes in the rhizosphere and demonstrates that Bacillus BPP gene is cosmopolitan in pasture soils from Chilean Andisols. © 2012 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

  9. Denitrification as an adaptive trait in soil and groundwater bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Bergwall, C

    1997-09-01

    The focus of this thesis is on selection and adaptation processes in bacteria with emphasis on denitrifying bacteria in groundwater. Other nitrogen transformation processes such as dissimilatory nitrate reduction to ammonium (nitrate ammonification) and nitrification of forest soil bacteria are briefly discussed. Microcosms with sterile sediment and groundwater were inoculated with single denitrifying strains isolated from three groundwater aquifers, two of which are agricultural aquifers (in situ NO{sub 3}{sup -}-N was 24.1 and 35.2 mg1{sup -1}) and the third which is a pristine lake water infiltration aquifer (in situ NO{sub 3}{sup -}-N was 6.3 mg1{sup -1}). The average denitrification activity for strains from the nitrate contaminated sites were twice as high as the activity of the strains from the pristine site. Denitrification were carbon limited and glucose amendment increased the denitrification activity about a 2-fold for all strains. The strain specific differences in denitrification rates increased to a 2.5-fold after carbon addition indicating that the differences in reduction rates cannot be explained by different carbon utilisation rates but rather reflect innate differences in the reductases of the strains. A preliminary identification of the molecular target for adaptation was performed with artificial electron donors and electron acceptors for all enzymatic steps in the denitrification pathway. Nitrous oxide reductase activity was significantly higher in denitrifiers from the nitrate contaminated sites. This suggests that nos genes may be the molecular target, possibly by mutation or gene duplication for adaptation to high nitrate concentrations. Two anaerobic denitrifiers from each of the contaminated sites were capable of aerobic denitrification indicating that high nitrate concentrations may select for strains that denitrifies in the presence of both oxygen and nitrate. Microcosm experiments with fertilized coniferous forest soil showed that the

  10. Comparison of in-situ gamma ray spectrometry measurements with conventional methods in determination natural and artificial nuclides in soil

    International Nuclear Information System (INIS)

    Al-Masri, M. S.; Doubal, A. W.

    2010-12-01

    Two nuclear analytical techniques (In-Situ Gamma ray spectrometry and laboratory gamma ray spectrometry) for determination of natural and artificial radionuclides in soil have been validated. The first technique depends on determination of radioactivity content of representative samples of the studied soil after laboratory preparation, while the second technique is based on direct determination of radioactivity content of soil using in-situ gamma-ray spectrometer. Analytical validation parameter such as detection limits, repeatability, reproducibility in addition to measurement uncertainties were estimated and compared for both techniques. Comparison results have shown that the determination of radioactivity in soil should apply the two techniques together where each of techniques is characterized by its low detection limit and uncertainty suitable for defined application of measurement. Radioactive isotopes in various locations were determined using the two methods by measuring 40 k, 238 U,and 137 Cs. The results showed that there are differences in attenuation factors due to soil moisture content differences; wet weight corrections should be applied when the two techniques are compared. (author)

  11. From Rare to Dominant: a Fine-Tuned Soil Bacterial Bloom during Petroleum Hydrocarbon Bioremediation.

    Science.gov (United States)

    Fuentes, Sebastián; Barra, Bárbara; Caporaso, J Gregory; Seeger, Michael

    2016-02-01

    Hydrocarbons are worldwide-distributed pollutants that disturb various ecosystems. The aim of this study was to characterize the short-lapse dynamics of soil microbial communities in response to hydrocarbon pollution and different bioremediation treatments. Replicate diesel-spiked soil microcosms were inoculated with either a defined bacterial consortium or a hydrocarbonoclastic bacterial enrichment and incubated for 12 weeks. The microbial community dynamics was followed weekly in microcosms using Illumina 16S rRNA gene sequencing. Both the bacterial consortium and enrichment enhanced hydrocarbon degradation in diesel-polluted soils. A pronounced and rapid bloom of a native gammaproteobacterium was observed in all diesel-polluted soils. A unique operational taxonomic unit (OTU) related to the Alkanindiges genus represented ∼ 0.1% of the sequences in the original community but surprisingly reached >60% after 6 weeks. Despite this Alkanindiges-related bloom, inoculated strains were maintained in the community and may explain the differences in hydrocarbon degradation. This study shows the detailed dynamics of a soil bacterial bloom in response to hydrocarbon pollution, resembling microbial blooms observed in marine environments. Rare community members presumably act as a reservoir of ecological functions in high-diversity environments, such as soils. This rare-to-dominant bacterial shift illustrates the potential role of a rare biosphere facing drastic environmental disturbances. Additionally, it supports the concept of "conditionally rare taxa," in which rareness is a temporary state conditioned by environmental constraints. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

  12. Influence of sediment on the fate and toxicity of a polyethoxylated tallowamine surfactant system (MON 0818) in aquatic microcosms

    Science.gov (United States)

    Wang, N.; Besser, J.M.; Buckler, D.R.; Honegger, J.L.; Ingersoll, C.G.; Johnson, B. Thomas; Kurtzweil, M.L.; MacGregor, J.; McKee, M.J.

    2005-01-01

    The fate and toxicity of a polyethoxylated tallowamine (POEA) surfactant system, MON 0818, was evaluated in water–sediment microcosms during a 4-d laboratory study. A surfactant solution of 8 mg l−1 nominal concentration was added to each of nine 72-l aquaria with or without a 3-cm layer of one of two natural sediments (total organic carbon (TOC) 1.5% or 3.0%). Control well water was added to each of nine additional 72-l aquaria with or without sediment. Water samples were collected from the microcosms after 2, 6, 24, 48, 72, and 96 h of aging to conduct 48-h toxicity tests with Daphnia magna and to determine surfactant concentrations. Elevated mortality of D. magna (43–83%) was observed in overlying water sampled from water-only microcosms throughout the 96-h aging period, whereas elevated mortality (23–97%) was only observed in overlying water sampled from water–sediment microcosms during the first 24 h of aging. Measured concentrations of MON 0818 in water-only microcosms remained relatively constant (4–6 mg l−1) during the 96-h period, whereas the concentrations in overlying water from microcosms containing either of the two types of sediment dissipated rapidly, with half-lives of 13 h in the 3.0% TOC sediment and 18 h in the 1.5% TOC sediment. Both toxicity and the concentration of MON 0818 in overlying water decreased more rapidly in microcosms containing sediment with the higher percent TOC and clay and with a higher microbial biomass. Mortality of D. magna was significantly correlated with surfactant concentrations in the overlying water. These results indicate that the toxicity of the POEA surfactant in water rapidly declines in the presence of sediment due to a reduction in the surfactant concentration in the overlying water above the sediment.

  13. Molecular analysis of microbial community structures in pristine and contaminated aquifers--Field and laboratory microcosm experiments

    Science.gov (United States)

    Shi, Y.; Zwolinski, M.D.; Schreiber, M.E.; Bahr, J.M.; Sewell, G.W.; Hickey, W.J.

    1999-01-01

    Molecular Analysis of Microbial Community Structures in Pristine and Contaminated Aquifers: Field and Laboratory Microcosm Experimentsvar callbackToken='531E8ACDB6C8511'; var subCode='asmjournal_sub'; var OAS_sitepage = 'aem.asm.org'; This study used phylogenetic probes in hybridization analysis to (i) determine in situ microbial community structures in regions of a shallow sand aquifer that were oxygen depleted and fuel contaminated (FC) or aerobic and noncontaminated (NC) and (ii) examine alterations in microbial community structures resulting from exposure to toluene and/or electron acceptor supplementation (nitrate). The latter objective was addressed by using the NC and FC aquifer materials for anaerobic microcosm studies in which phylogenetic probe analysis was complemented by microbial activity assays. Domain probe analysis of the aquifer samples showed that the communities were predominantlyBacteria; Eucarya and Archaea were not detectable. At the phylum and subclass levels, the FC and NC aquifer material had similar relative abundance distributions of 43 to 65% β- and γ-Proteobacteria (B+G), 31 to 35% α-Proteobacteria (ALF), 15 to 18% sulfate-reducing bacteria, and 5 to 10% high G+C gram positive bacteria. Compared to that of the NC region, the community structure of the FC material differed mainly in an increased abundance of B+G relative to that of ALF. The microcosm communities were like those of the field samples in that they were predominantly Bacteria (83 to 101%) and lacked detectable Archaea but differed in that a small fraction (2 to 8%) of Eucarya was detected regardless of the treatment applied. The latter result was hypothesized to reflect enrichment of anaerobic protozoa. Addition of nitrate and/or toluene stimulated microbial activity in the microcosms, but only supplementation of toluene alone significantly altered community structures. For the NC material, the dominant subclass shifted from B+G to ALF, while in the FC microcosms 55 to 65

  14. A Handbook on Artificial Soils for Indoor Photovoltaic Soiling Tests

    Energy Technology Data Exchange (ETDEWEB)

    Burton, Patrick D. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); King, Bruce Hardison [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2014-10-01

    This manuscript is intended to serve as a practical guide to conducting repeatable indoor soiling experiments for PV applications. An outline of techniques, materials and equipment used in prior studies [1-3] is presented. Additional recommendations and practical guidance has been presented. Major sections include techniques to formulate soil simulants, ('standard grime') and feedstocks from traceable components, spray application, and quantitative measurement methodologies at heavy and minimal soil loadings.

  15. Distribution of artificial radionuclides in particle-size fractions of soil on fallout plumes of nuclear explosions.

    Science.gov (United States)

    Kabdyrakova, A M; Lukashenko, S N; Mendubaev, A T; Kunduzbayeva, A Ye; Panitskiy, A V; Larionova, N V

    2018-06-01

    In this paper are analyzed the artificial radionuclide distributions ( 137 Cs, 90 Sr, 241 Am, 239+240 Pu) in particle-size fractions of soils from two radioactive fallout plumes at the Semipalatinsk Test Site. These plumes were generated by a low-yield surface nuclear test and a surface non-nuclear experiment with insignificant nuclear energy release, respectively, and their lengths are approximately 3 and 0,65 km. In contrast with the great majority of similar studies performed in areas affected mainly by global fallout where adsorbing radionuclides such as Pu are mainly associated with the finest soil fractions, in this study it was observed that along both analyzed plumes the highest activity concentrations are concentrated in the coarse soil fractions. At the plume generated by the surface nuclear test, the radionuclides are concentrated mainly in the 1000-500 μm soil fraction (enrichment factor values ranging from 1.2 to 3.8), while at the plume corresponding to the surface non-nuclear test is the 500-250 μm soil fraction the enriched one by technogenic radionuclides (enrichment factor values ranging from 1.1 to 5.1). In addition, the activity concentration distributions among the different soil size fractions are similar for all radionuclides in both plumes. All the obtained data are in agreement with the hypothesis indicating that enrichment observed in the coarse fractions is caused by the presence of radioactive particles resulted from the indicated nuclear tests. Copyright © 2017 Elsevier Ltd. All rights reserved.

  16. Effects of the fungicide metiram in outdoor freshwater microcosms: responses of invertebrates, primany producers and microbes

    OpenAIRE

    Ronghua, Lin; Buijse-Bogdan, L.L.; Rocha Dimitrov, M.; Dohmen, P.; Kosol, Sujitra; Maltby, L.; Roessink, I.; Sinkeldam, J.A.; Smidt, H.; Wijngaarden, van, R.P.A.; Brock, T.C.M.

    2012-01-01

    The ecological impact of the dithiocarbamate fungicide metiram was studied in outdoor freshwater microcosms, consisting of 14 enclosures placed in an experimental ditch. The microcosms were treated three times (interval 7 days) with the formulated product BAS 222 28F (Polyram®). Intended metiram concentrations in the overlying water were 0, 4, 12, 36, 108 and 324 μg a.i./L. Responses of zooplankton, macroinvertebrates, phytoplankton, macrophytes, microbes and community metabolism endpoints we...

  17. Effects of the fungicide metiram in outdoor freshwater microcosms: responses of invertebrates, primary producers and microbes.

    Science.gov (United States)

    Lin, Ronghua; Buijse, Laura; Dimitrov, Mauricio R; Dohmen, Peter; Kosol, Sujitra; Maltby, Lorraine; Roessink, Ivo; Sinkeldam, Jos A; Smidt, Hauke; Van Wijngaarden, René P A; Brock, Theo C M

    2012-07-01

    The ecological impact of the dithiocarbamate fungicide metiram was studied in outdoor freshwater microcosms, consisting of 14 enclosures placed in an experimental ditch. The microcosms were treated three times (interval 7 days) with the formulated product BAS 222 28F (Polyram®). Intended metiram concentrations in the overlying water were 0, 4, 12, 36, 108 and 324 μg a.i./L. Responses of zooplankton, macroinvertebrates, phytoplankton, macrophytes, microbes and community metabolism endpoints were investigated. Dissipation half-life (DT₅₀) of metiram was approximately 1-6 h in the water column of the microcosm test system and the metabolites formed were not persistent. Multivariate analysis indicated treatment-related effects on the zooplankton (NOEC(community) = 36 μg a.i./L). Consistent treatment-related effects on the phytoplankton and macroinvertebrate communities and on the sediment microbial community could not be demonstrated or were minor. There was no evidence that metiram affected the biomass, abundance or functioning of aquatic hyphomycetes on decomposing alder leaves. The most sensitive populations in the microcosms comprised representatives of Rotifera with a NOEC of 12 μg a.i./L on isolated sampling days and a NOEC of 36 μg a.i./L on consecutive samplings. At the highest treatment-level populations of Copepoda (zooplankton) and the blue-green alga Anabaena (phytoplankton) also showed a short-term decline on consecutive sampling days (NOEC = 108 μg a.i./L). Indirect effects in the form of short-term increases in the abundance of a few macroinvertebrate and several phytoplankton taxa were also observed. The overall community and population level no-observed-effect concentration (NOEC(microcosm)) was 12-36 μg a.i./L. At higher treatment levels, including the test systems that received the highest dose, ecological recovery of affected measurement endpoints was fast (effect period < 8 weeks).

  18. Mercury transformation and release differs with depth and time in a contaminated riparian soil during simulated flooding

    Science.gov (United States)

    Poulin, Brett; Aiken, George R.; Nagy, Kathryn L.; Manceau, Alain; Krabbenhoft, David P.; Ryan, Joseph N.

    2016-01-01

    Riparian soils are an important environment in the transport of mercury in rivers and wetlands, but the biogeochemical factors controlling mercury dynamics under transient redox conditions in these soils are not well understood. Mercury release and transformations in the Oa and underlying A horizons of a contaminated riparian soil were characterized in microcosms and an intact soil core under saturation conditions. Pore water dynamics of total mercury (HgT), methylmercury (MeHg), and dissolved gaseous mercury (Hg0(aq)) along with selected anions, major elements, and trace metals were characterized across redox transitions during 36 d of flooding in microcosms. Next, HgT dynamics were characterized over successive flooding (17 d), drying (28 d), and flooding (36 d) periods in the intact core. The observed mercury dynamics exhibit depth and temporal variability. At the onset of flooding in microcosms (1–3 d), mercury in the Oa horizon soil, present as a combination of ionic mercury (Hg(II)) bound to thiol groups in the soil organic matter (SOM) and nanoparticulate metacinnabar (b-HgS), was mobilized with organic matter of high molecular weight. Subsequently, under anoxic conditions, pore water HgT declined coincident with sulfate (3–11 d) and the proportion of nanoparticulate b-HgS in the Oa horizon soil increased slightly. Redox oscillations in the intact Oa horizon soil exhausted the mobile mercury pool associated with organic matter. In contrast, mercury in the A horizon soil, present predominantly as nanoparticulate b-HgS, was mobilized primarily as Hg0(aq) under strongly reducing conditions (5–18 d). The concentration of Hg0(aq) under dark reducing conditions correlated positively with byproducts of dissimilatory metal reduction (P(Fe,Mn)). Mercury dynamics in intact A horizon soil were consistent over two periods of flooding, indicating that nanoparticulate b-HgS was an accessible pool of mobile mercury over recurrent reducing conditions. The

  19. Biodiversity of soil bacteria exposed to sub-lethal concentrations of phosphonium-based ionic liquids: Effects of toxicity and biodegradation.

    Science.gov (United States)

    Sydow, Mateusz; Owsianiak, Mikołaj; Framski, Grzegorz; Woźniak-Karczewska, Marta; Piotrowska-Cyplik, Agnieszka; Ławniczak, Łukasz; Szulc, Alicja; Zgoła-Grześkowiak, Agnieszka; Heipieper, Hermann J; Chrzanowski, Łukasz

    2018-01-01

    Little is known about the effect of ionic liquids (ILs) on the structure of soil microbial communities and resulting biodiversity. Therefore, we studied the influence of six trihexyl(tetradecyl)phosphonium ILs (with either bromide or various organic anions) at sublethal concentrations on the structure of microbial community present in an urban park soil in 100-day microcosm experiments. The biodiversity decreased in all samples (Shannon's index decreased from 1.75 down to 0.74 and OTU's number decreased from 1399 down to 965) with the largest decrease observed in the microcosms spiked with ILs where biodegradation extent was higher than 80%. (i.e. [P 66614 ][Br] and [P 66614 ][2,4,4]). Despite this general decrease in biodiversity, which can be explained by ecotoxic effect of the ILs, the microbial community in the microcosms was enriched with Gram-negative hydrocarbon-degrading genera e.g. Sphingomonas. It is hypothesized that, in addition to toxicity, the observed decrease in biodiversity and change in the microbial community structure may be explained by the primary biodegradation of the ILs or their metabolites by the mentioned genera, which outcompeted other microorganisms unable to degrade ILs or their metabolites. Thus, the introduction of phosphonium-based ILs into soils at sub-lethal concentrations may result not only in a decrease in biodiversity due to toxic effects, but also in enrichment with ILs-degrading bacteria. Copyright © 2017 Elsevier Inc. All rights reserved.

  20. Sorption behaviour of radioactive technetium in soils

    International Nuclear Information System (INIS)

    Xia Deying

    1996-01-01

    The sorption behaviour of technetium in different soils has been studied by batch experiments under aerobic conditions. The soil samples have been taken to study the characteristics and to derive the pH-Eh values. In addition, the activated carbon and reduced iron powder have been selected as additives to the JAERI sand according to the former research work, so that the technetium sorption behaviour in the artificial soils can be studied under similar conditions. The experimental results show that all these soil samples except for the gluey soil have a very small distribution coefficient for Tc, while the artificial soils have a very large distribution coefficient for Tc. Besides, for artificial soils, the distribution coefficient (R d ) values will become larger and larger when more additive is added and more contact time is allowed. The physico-chemical fixation processes and possible sorption modes have been discussed as well

  1. Ecotoxicological evaluation of diesel-contaminated soil before and after a bioremediation process.

    Science.gov (United States)

    Molina-Barahona, L; Vega-Loyo, L; Guerrero, M; Ramírez, S; Romero, I; Vega-Jarquín, C; Albores, A

    2005-02-01

    Evaluation of contaminated sites is usually performed by chemical analysis of pollutants in soil. This is not enough either to evaluate the environmental risk of contaminated soil nor to evaluate the efficiency of soil cleanup techniques. Information on the bioavailability of complex mixtures of xenobiotics and degradation products cannot be totally provided by chemical analytical data, but results from bioassays can integrate the effects of pollutants in complex mixtures. In the preservation of human health and environment quality, it is important to assess the ecotoxicological effects of contaminated soils to obtain a better evaluation of the healthiness of this system. The monitoring of a diesel-contaminated soil and the evaluation of a bioremediation technique conducted on a microcosm scale were performed by a battery of ecotoxicological tests including phytotoxicity, Daphnia magna, and nematode assays. In this study we biostimulated the native microflora of soil contaminated with diesel by adding nutrients and crop residue (corn straw) as a bulking agent and as a source of microorganisms and nutrients; in addition, moisture was adjusted to enhance diesel removal. The bioremediation process efficiency was evaluated directly by an innovative, simple phytotoxicity test system and the diesel extracts by Daphnia magna and nematode assays. Contaminated soil samples were revealed to have toxic effects on seed germination, seedling growth, and Daphnia survival. After biostimulation, the diesel concentration was reduced by 50.6%, and the soil samples showed a significant reduction in phytotoxicity (9%-15%) and Daphnia assays (3-fold), confirming the effectiveness of the bioremediation process. Results from our microcosm study suggest that in addition to the evaluation of the bioremediation processes efficiency, toxicity testing is different with organisms representative of diverse phylogenic levels. The integration of analytical, toxicological and bioremediation data

  2. Susceptibility of the eggs of the field slug Deroceras reticulatum to contact with pesticides and substances of biological origin on artificial soil

    NARCIS (Netherlands)

    Iglesias, J.; Castillejo, J.; Ester, A.; Castro, R.; Lombardia, M.J.

    2002-01-01

    The toxicity of 14 substances, including a number of pesticides, to the eggs of the pest slug Deroceras reticulatum was determined in laboratory experiments. Eggs were kept in contact with a precisely defined artificial soil to which a range of concentrations of the test substances had been applied.

  3. Organic amendments for risk mitigation of organochlorine pesticide residues in old orchard soils

    International Nuclear Information System (INIS)

    Centofanti, Tiziana; McConnell, Laura L.; Chaney, Rufus L.; Beyer, W. Nelson; Andrade, Natasha A.; Hapeman, Cathleen J.; Torrents, Alba; Nguyen, Anh; Anderson, Marya O.; Novak, Jeffrey M.

    2016-01-01

    Performance of compost and biochar amendments for in situ risk mitigation of aged DDT, DDE and dieldrin residues in an old orchard soil was examined. The change in bioavailability of pesticide residues to Lumbricus terrestris L. relative to the unamended control soil was assessed using 4-L soil microcosms with and without plant cover in a 48-day experiment. The use of aged dairy manure compost and biosolids compost was found to be effective, especially in the planted treatments, at lowering the bioavailability factor (BAF) by 18–39%; however, BAF results for DDT in the unplanted soil treatments were unaffected or increased. The pine chip biochar utilized in this experiment was ineffective at lower the BAF of pesticides in the soil. The US EPA Soil Screening Level approach was used with our measured values. Addition of 10% of the aged dairy manure compost reduced the average hazard quotient values to below 1.0 for DDT + DDE and dieldrin. Results indicate this sustainable approach is appropriate to minimize risks to wildlife in areas of marginal organochlorine pesticide contamination. Application of this remediation approach has potential for use internationally in areas where historical pesticide contamination of soils remains a threat to wildlife populations. - Highlights: • Historical applications of organochlorine pesticides are a risk to local ecosystems. • Low cost and sustainable mitigation measures are needed to reduce risks. • Organic matter rich amendments were added to contaminated soil. • Earthworms microcosms were used to measure bioaccumulation factors. • Aged composts were most effective at mitigating risks to ecosystems. - Incorporation of aged dairy manure and biosolids compost amendments is an effective, low cost approach to mitigate risks to terrestrial wildlife from organochlorine pesticides in soils.

  4. Microflora dynamics in earthworms casts in an artificial soil (biosynthesol containing lactic acid oligomers

    Directory of Open Access Journals (Sweden)

    Alauzet Nathalie

    2001-01-01

    Full Text Available Studies were performed to appreciate the presence of micro-organisms able to degrade OLA, in earthworms casts or in the surroundings. Worms were grown in biosynthesol, an artificial soil. The counting of bacteria and fungi in earthworms casts and in biosynthesol without earthworms suggested that earthworms ate some of the micro-organisms. The main filamentous fungi genera found were Aspergillus, Trichoderma, Fusarium and Penicillium. Previous results in the literature have shown that some species from the Aspergillus and Fusarium genera were able to degrade OLA and other aliphatic esters. It could be suggested that these two genera and some bacteria were responsible for the pre-degradation of OLA, and that earthworms might eat them.

  5. Evaluated fate and effects of atrazine and lambda-cyhalothrin in vegetated and unvegetated microcosms.

    Science.gov (United States)

    Bouldin, J L; Farris, J L; Moore, M T; Smith, S; Stephens, W W; Cooper, C M

    2005-10-01

    Contaminants such as nutrients, metals, and pesticides can interact with constructed wetlands and existing drainage ditches used as agricultural best-management practices. Our research has shown that the presence of macrophytes and a hydrologic regime aid in the transfer and transformation of pesticides associated with agricultural runoff. This study consisted of application of both atrazine (triazine herbicide) and lambda-cyhalothrin (pyrethroid insecticide) to vegetated and unvegetated microcosms in order to measure the fate and effects of pesticides applied at suggested field application rates. Exposures focused on monocultures of Ludwigia peploides (water primrose) and Juncus effusus (soft rush). Pesticide sorption was evident through concentrations of atrazine and lambda-cyhalothrin in plant tissue as high as 2461.4 and 86.50 microg/kg, respectively. Toxicity was measured in water from unvegetated microcosms for 28 days and in Chironomus tentans (midge larvae) exposed to sediment collected from 3 h to 56 days in microcosms receiving the pesticide combination. The comparative survival of test organisms in this study suggests that effective mitigation of pesticides from runoff can depend on the macrophyte contact and vegetative attributes associated with ditches. (c) 2005 Wiley Periodicals, Inc.

  6. Distribution of some artificial and natural radionuclides and trace elements in Syrian soils

    International Nuclear Information System (INIS)

    Al-Masri, M. S.; Shaik Khalil, H.; Amin, Y.; Ibrahim, S.; Hassan, M.

    2004-07-01

    Within the environmental monitoring program in Syria, about 115 surface soil and 38 profile soil samples were collected and analyzed during the period of 1998 to 2003 in order to determine the levels of natural and artificial radionuclides and some of trace elements (Cu, Zn, Cd, Pb). The concentrations of the natural radionuclides in the surface samples were found to vary from area to another and ranged from 2-50 Bq/kg, 4-228 Bq/kg, 4-55 Bq/kg, 1-143 Bq/kg and 96-672 Bq/kg for 224 Ra, 226 Ra, 228 Ra, 137 Cs and 04 K, respectively. While, the concentrations of the studied trace elements were varied between 0.5-5.6 mg/kg for U, 3.2-31.7 mg/kg for Pb, 14-141 mg/kg for Zn, 1.6-114 mg/kg for Cu and 0.25-2.7 mg/kg for Cd. Most of the reported values in this study were in the range of the natural uncontaminated surface soil concentrations and published values in many countries in the world. The results showed that the relation between the distribution of the natural radionuclides and depth was approximately the same for all radionuclides except for 137 Cs, which was extremely binded in the upper layers of soil. In addition, some differences in the concentrations of the studied trace elements with depth were observed. These differences may be due to the average of rainfall and the existence of some potential sources of contamination of such elements. However, the results of this study can be considered as a database for the natural background in Syria that helps to establish the radiation map of the country.(author)

  7. The content of natural radioactive elements and artificial radioisotopes in Moldova's soils; Continutul unor elemente radioactive naturale si radioizotopi artificiali in solurile Moldovei

    Energy Technology Data Exchange (ETDEWEB)

    Stasiev, Gr. [Univ. de Stat din Moldova, Chisinau (Moldova, Republic of); Nedealcov, S.; Jigau, Gh. [Centrul Republican de Pedologie Aplicata, Chisinau (Moldova, Republic of)

    2013-08-15

    The results of multiyear investigations of natural radionuclide (U-238, Th-232, Ra-226, K-40) and artificial isotopes (Sr-90, Cs-137, I-131) content on soil and plants are presented. Six anomalous polluted areas were detected after Chernobyl nuclear power plant accident. (authors)

  8. In situ determination of the effects of lead and copper on cyanobacterial populations in microcosms.

    Directory of Open Access Journals (Sweden)

    Mireia Burnat

    Full Text Available BACKGROUND: Biomass has been studied as biomarker to evaluate the effect of heavy metals on microbial communities. Nevertheless, the most important methodological problem when working with natural and artificial microbial mats is the difficulty to evaluate changes produced on microorganism populations that are found in thicknesses of just a few mm depth. METHODOLOGY/PRINCIPAL FINDINGS: Here, we applied for first time a recently published new method based on confocal laser scanning microscopy and image-program analysis to determine in situ the effect of Pb and Cu stress in cyanobacterial populations. CONCLUSIONS/SIGNIFICANCE: The results showed that both in the microcosm polluted by Cu and by Pb, a drastic reduction in total biomass for cyanobacterial and Microcoleus sp. (the dominant filamentous cyanobacterium in microbial mats was detected within a week. According to the data presented in this report, this biomass inspection has a main advantage: besides total biomass, diversity, individual biomass of each population and their position can be analysed at microscale level. CLSM-IA could be a good method for analyzing changes in microbial biomass as a response to the addition of heavy metals and also to other kind of pollutants.

  9. In situ determination of the effects of lead and copper on cyanobacterial populations in microcosms.

    Science.gov (United States)

    Burnat, Mireia; Diestra, Elia; Esteve, Isabel; Solé, Antonio

    2009-07-10

    Biomass has been studied as biomarker to evaluate the effect of heavy metals on microbial communities. Nevertheless, the most important methodological problem when working with natural and artificial microbial mats is the difficulty to evaluate changes produced on microorganism populations that are found in thicknesses of just a few mm depth. Here, we applied for first time a recently published new method based on confocal laser scanning microscopy and image-program analysis to determine in situ the effect of Pb and Cu stress in cyanobacterial populations. The results showed that both in the microcosm polluted by Cu and by Pb, a drastic reduction in total biomass for cyanobacterial and Microcoleus sp. (the dominant filamentous cyanobacterium in microbial mats) was detected within a week. According to the data presented in this report, this biomass inspection has a main advantage: besides total biomass, diversity, individual biomass of each population and their position can be analysed at microscale level. CLSM-IA could be a good method for analyzing changes in microbial biomass as a response to the addition of heavy metals and also to other kind of pollutants.

  10. Disentangling the rhizosphere effect on nitrate reducers and denitrifiers: insight into the role of root exudates.

    Science.gov (United States)

    Henry, S; Texier, S; Hallet, S; Bru, D; Dambreville, C; Chèneby, D; Bizouard, F; Germon, J C; Philippot, L

    2008-11-01

    To determine to which extent root-derived carbon contributes to the effects of plants on nitrate reducers and denitrifiers, four solutions containing different proportions of sugar, organic acids and amino acids mimicking maize root exudates were added daily to soil microcosms at a concentration of 150 microg C g(-1) of soil. Water-amended soils were used as controls. After 1 month, the size and structure of the nitrate reducer and denitrifier communities were analysed using the narG and napA, and the nirK, nirS and nosZ genes as molecular markers respectively. Addition of artificial root exudates (ARE) did not strongly affect the structure or the density of nitrate reducer and denitrifier communities whereas potential nitrate reductase and denitrification activities were stimulated by the addition of root exudates. An effect of ARE composition was also observed on N(2)O production with an N(2)O:(N(2)O + N(2)) ratio of 0.3 in microcosms amended with ARE containing 80% of sugar and of 1 in microcosms amended with ARE containing 40% of sugar. Our study indicated that ARE stimulated nitrate reduction or denitrification activity with increases in the range of those observed with the whole plant. Furthermore, we demonstrated that the composition of the ARE affected the nature of the end-product of denitrification and could thus have a putative impact on greenhouse gas emissions.

  11. The effects of short term exposure to Bass Strait crude oil and Corexit 8667 on benthic community metabolism in Posidonia australis Hook. f. dominated microcosms

    Energy Technology Data Exchange (ETDEWEB)

    Hatcher, A.I.; Larkum, A.W.D.

    1982-03-01

    Microcosms consisting of a sublittoral seagrass meadow from Botany Bay, N.S.W. were maintained in aquaria in a controlled environment room from March to August 1979. Oxygen production and consumption in the microcosms and leaf turnover of the seagrass, Posidonia australis Hook.f. were measured before, during and after a 7-day treatment in June with Bass Strait crude oil and the dispersant Corexit 8667. Four microcosms received oil and two of these received dispersant. The leaf turnover of P. australis was not significantly affected by the addition of oil and dispersant. Photosynthetic oxygen production decreased and respiration increased in the microcosms during treatment. In August, 40 days after treatment, oxygen production rates and P/R ratios in the oil-treated microcosms were higher than rates measured before treatment. The oil-and-dispersant-treated microcosms did not show this trend. The results of this study indicate that a more severe stress is placed on the P. australis dominated benthic community by oil and dispersant than by oil alone.

  12. Development of artificial soft rock. Jinko nangan zairyo no kaihatsu

    Energy Technology Data Exchange (ETDEWEB)

    Kishi, K.; Nishioka, T. (The Tokyo Electric Power Co. Inc., Tokyo (Japan)); Nojiri, Y.; Kurihara, H.; Fukazawa, E. (Kajima Corp., Tokyo (Japan))

    1990-09-15

    When a part of the ground is replaced with artificial materials in the construction of important structures on soft rock foundations, it is desirable for the artificial materials to have the rigidity equivalent to that of the surrounding ground and to be stable in the long term. The article reports a success in the development and utilization of artificial soft rocks satisfying the above conditions by using a raw material produced locally at the construction site. The soft rock aimed at was mudstone belonging to the Neocene period, and the artificial material of soil-mortal system is selected as the equivalent having the same physical properties. Improvements in selection of solidification agents and cohesive soil were especially contrived: taht is, a new material for solidification was developed by mixing blast-furnace cement and gypsum; and the mudstone on the site was used as the cohesive soil by slurrying it to adjust its grain size to homogeneous composition. The artificial soft rock resulting from the above contrivance showed excellent flow, self-leveling, and filling properties at the stage of fresh mortar, and the physical properties after hardning was very similar to those of the natural ground. The long-term stability was also confirmed by the tests on hydration reaction and environmental factors. 2 figs., 1 tab.

  13. Responses of Ammonia-Oxidising Bacterial Communities to Nitrogen, Lime, and Plant Species in Upland Grassland Soil

    International Nuclear Information System (INIS)

    Rooney, D.C.; Kennedy, N.M.; Clipson, N.J.W.; Rooney, D.C.; Kennedy, N.M.; Gleeson, D.B.

    2010-01-01

    Agricultural improvement of semi natural grasslands has been shown to result in changes to plant and microbial diversity, with consequences for ecosystem functioning. A microcosm approach was used to elucidate the effects of two key components of agricultural improvement (nitrogen addition and liming) on ammonia-oxidising bacterial (AOB) communities in an upland grassland soil. Plant species characteristic of unimproved and improved pastures (A. capillaries and L. perenne) were planted in microcosms, and lime, nitrogen (NH 4 NO 3 ), or lime plus nitrogen added. The AOB community was profiled using terminal restriction fragment length polymorphism (TRFLP) of the amoA gene. AOB community structure was largely altered by NH 4 NO 3 addition, rather than liming, although interactions between nitrogen addition and plant species were also evident. Results indicate that nitrogen addition drives shifts in the structure of key microbial communities in upland grassland soils, and that plant species may play a significant role in determining AOB community structure

  14. A lake as a microcosm: reflections on developments in aquatic ecology

    DEFF Research Database (Denmark)

    Hansson, Lars-Anders; Brodersen, Jakob; Chapman, Ben B.

    2013-01-01

    and still is, specially since it touches upon almost all aspects of the lake ecosystem, from individual behaviour to food web interactions and environmental issues. Therefore, there is no doubt that even if 125 years have passed, Forbes’ paper still is a source of inspiration and deserves to be read. Hence......In the present study, we aim at relating Forbes’ remarkable paper on ‘‘The lake as a microcosm’’, published 125 years ago, to the present status of knowledge in our own research group. Hence, we relate the observations Forbes made to our own microcosm, Lake Krankesjo¨n in southern Sweden, that has...... that lakes are more isolated than many other biomes, but have, indeed, many extensions, for example, input from the catchment, fishing and fish migration. We also conclude that irrespective of whether lakes should be viewed as microcosms or not, the paper by Forbes has been exceptionally influential...

  15. Determination of natural and artificial radioactivity in soil at North Lebanon province.

    Science.gov (United States)

    El Samad, O; Baydoun, R; Nsouli, B; Darwish, T

    2013-11-01

    The concentrations of natural and artificial radionuclides at 57 sampling locations along the North Province of Lebanon are reported. The samples were collected from uncultivated areas in a region not previously reported. The samples were analyzed by gamma spectrometers with High Purity Germanium detectors of 30% and 40% relative efficiency. The activity concentrations of primordial naturally occurring radionuclides of (238)U, (232)Th, and (40)K varied between 4-73 Bq kg(-1), 5-50 Bq kg(-1), and 57-554 Bq kg(-1) respectively. The surface activity concentrations due to the presence of these radionuclides were calculated and Kriging-geostatistical method was used to plot the obtained data on the Lebanese radioactive map. The results for (238)U, (232)Th, and (40)K ranged from 0.2 kBq m(-2) to 9 kBq m(-2), from 0.2 kBq m(-2) to 3 kBq m(-2), and from 3 kBq m(-2) to 29 kBq m(-2) respectively. For the anthropogenic radionuclides, the activity concentrations of (137)Cs founded in soil ranged from 2 Bq kg(-1) to 113 Bq kg(-1), and the surface activity concentration from 0.1 kBq m(-2) to 5 kBq m(-2). The total absorbed gamma dose rates in air from natural and artificial radionuclides in these locations were calculated. The minimum value was 6 nGy h(-1) and the highest one was 135 nGy h(-1) with an average of 55 nGy h(-1) in which the natural terrestrial radiation contributes in 99% and the artificial radionuclides mainly (137)Cs contributes only in 1%. The total effective dose calculated varied in the range of 7 μSv y(-1) and 166 μSv y(-1) while the average value was 69 μSv y(-1) which is below the permissible limit 1000 μSv y(-1). Copyright © 2013 Elsevier Ltd. All rights reserved.

  16. Remarkable recovery and colonization behaviour of methane oxidizing bacteria in soil after disturbance is controlled by methane source only.

    Science.gov (United States)

    Pan, Yao; Abell, Guy C J; Bodelier, Paul L E; Meima-Franke, Marion; Sessitsch, Angela; Bodrossy, Levente

    2014-08-01

    Little is understood about the relationship between microbial assemblage history, the composition and function of specific functional guilds and the ecosystem functions they provide. To learn more about this relationship we used methane oxidizing bacteria (MOB) as model organisms and performed soil microcosm experiments comprised of identical soil substrates, hosting distinct overall microbial diversities(i.e., full, reduced and zero total microbial and MOB diversities). After inoculation with undisturbed soil, the recovery of MOB activity, MOB diversity and total bacterial diversity were followed over 3 months by methane oxidation potential measurements and analyses targeting pmoA and 16S rRNA genes. Measurement of methane oxidation potential demonstrated different recovery rates across the different treatments. Despite different starting microbial diversities, the recovery and succession of the MOB communities followed a similar pattern across the different treatment microcosms. In this study we found that edaphic parameters were the dominant factor shaping microbial communities over time and that the starting microbial community played only a minor role in shaping MOB microbial community.

  17. Does S-metolachlor affect the performance of Pseudomonas sp. strain ADP as bioaugmentation bacterium for atrazine-contaminated soils?

    Directory of Open Access Journals (Sweden)

    Cristina A Viegas

    Full Text Available Atrazine (ATZ and S-metolachlor (S-MET are two herbicides widely used, often as mixtures. The present work examined whether the presence of S-MET affects the ATZ-biodegradation activity of the bioaugmentation bacterium Pseudomonas sp. strain ADP in a crop soil. S-MET concentrations were selected for their relevance in worst-case scenarios of soil contamination by a commercial formulation containing both herbicides. At concentrations representative of application of high doses of the formulation (up to 50 µg g(-1 of soil, corresponding to a dose approximately 50× higher than the recommended field dose (RD, the presence of pure S-MET significantly affected neither bacteria survival (~10(7 initial viable cells g(-1 of soil nor its ATZ-mineralization activity. Consistently, biodegradation experiments, in larger soil microcosms spiked with 20× or 50 × RD of the double formulation and inoculated with the bacterium, revealed ATZ to be rapidly (in up to 5 days and extensively (>96% removed from the soil. During the 5 days, concentration of S-MET decreased moderately to about 60% of the initial, both in inoculated and non-inoculated microcosms. Concomitantly, an accumulation of the two metabolites S-MET ethanesulfonic acid and S-MET oxanilic acid was found. Despite the dissipation of almost all the ATZ from the treated soils, the respective eluates were still highly toxic to an aquatic microalgae species, being as toxic as those from the untreated soil. We suggest that this high toxicity may be due to the S-MET and/or its metabolites remaining in the soil.

  18. Impact of electrokinetic remediation on microbial communities within PCP contaminated soil

    International Nuclear Information System (INIS)

    Lear, G.; Harbottle, M.J.; Sills, G.; Knowles, C.J.; Semple, K.T.; Thompson, I.P.

    2007-01-01

    Electrokinetic techniques have been used to stimulate the removal of organic pollutants within soil, by directing contaminant migration to where remediation may be more easily achieved. The effect of this and other physical remediation techniques on the health of soil microbial communities has been poorly studied and indeed, largely ignored. This study reports the impact on soil microbial communities during the application of an electric field within ex situ laboratory soil microcosms contaminated with pentachlorophenol (PCP; 100 mg kg -1 oven dry soil). Electrokinetics reduced counts of culturable bacteria and fungi, soil microbial respiration and carbon substrate utilisation, especially close to the acidic anode where PCP accumulated (36 d), perhaps exacerbated by the greater toxicity of PCP at lower soil pH. There is little doubt that a better awareness of the interactions between soil electrokinetic processes and microbial communities is key to improving the efficacy and sustainability of this remediation strategy. - Electrokinetics negatively impacted soil

  19. Molecular Analysis of Microbial Community Structures in Pristine and Contaminated Aquifers: Field and Laboratory Microcosm Experiments

    Science.gov (United States)

    Shi, Y.; Zwolinski, M. D.; Schreiber, M. E.; Bahr, J. M.; Sewell, G. W.; Hickey, W. J.

    1999-01-01

    This study used phylogenetic probes in hybridization analysis to (i) determine in situ microbial community structures in regions of a shallow sand aquifer that were oxygen depleted and fuel contaminated (FC) or aerobic and noncontaminated (NC) and (ii) examine alterations in microbial community structures resulting from exposure to toluene and/or electron acceptor supplementation (nitrate). The latter objective was addressed by using the NC and FC aquifer materials for anaerobic microcosm studies in which phylogenetic probe analysis was complemented by microbial activity assays. Domain probe analysis of the aquifer samples showed that the communities were predominantly Bacteria; Eucarya and Archaea were not detectable. At the phylum and subclass levels, the FC and NC aquifer material had similar relative abundance distributions of 43 to 65% β- and γ-Proteobacteria (B+G), 31 to 35% α-Proteobacteria (ALF), 15 to 18% sulfate-reducing bacteria, and 5 to 10% high G+C gram positive bacteria. Compared to that of the NC region, the community structure of the FC material differed mainly in an increased abundance of B+G relative to that of ALF. The microcosm communities were like those of the field samples in that they were predominantly Bacteria (83 to 101%) and lacked detectable Archaea but differed in that a small fraction (2 to 8%) of Eucarya was detected regardless of the treatment applied. The latter result was hypothesized to reflect enrichment of anaerobic protozoa. Addition of nitrate and/or toluene stimulated microbial activity in the microcosms, but only supplementation of toluene alone significantly altered community structures. For the NC material, the dominant subclass shifted from B+G to ALF, while in the FC microcosms 55 to 65% of the Bacteria community was no longer identifiable by the phylum or subclass probes used. The latter result suggested that toluene exposure fostered the proliferation of phylotype(s) that were otherwise minor constituents of the

  20. Special Education: A Microcosm of Bureaucracy. Part Two: The Elements of the System

    Science.gov (United States)

    Clark, Ann D.

    1971-01-01

    Delineates a case study of special education that provides a unique microcosm of the emergence of an educational subsystem with inherent and forceful bureaucratic controls that were present from its inception. (Author)

  1. Artificial neural networks applied for soil class prediction in mountainous landscape of the Serra do Mar¹

    Directory of Open Access Journals (Sweden)

    Braz Calderano Filho

    2014-12-01

    Full Text Available Soil information is needed for managing the agricultural environment. The aim of this study was to apply artificial neural networks (ANNs for the prediction of soil classes using orbital remote sensing products, terrain attributes derived from a digital elevation model and local geology information as data sources. This approach to digital soil mapping was evaluated in an area with a high degree of lithologic diversity in the Serra do Mar. The neural network simulator used in this study was JavaNNS and the backpropagation learning algorithm. For soil class prediction, different combinations of the selected discriminant variables were tested: elevation, declivity, aspect, curvature, curvature plan, curvature profile, topographic index, solar radiation, LS topographic factor, local geology information, and clay mineral indices, iron oxides and the normalized difference vegetation index (NDVI derived from an image of a Landsat-7 Enhanced Thematic Mapper Plus (ETM+ sensor. With the tested sets, best results were obtained when all discriminant variables were associated with geological information (overall accuracy 93.2 - 95.6 %, Kappa index 0.924 - 0.951, for set 13. Excluding the variable profile curvature (set 12, overall accuracy ranged from 93.9 to 95.4 % and the Kappa index from 0.932 to 0.948. The maps based on the neural network classifier were consistent and similar to conventional soil maps drawn for the study area, although with more spatial details. The results show the potential of ANNs for soil class prediction in mountainous areas with lithological diversity.

  2. High Pb concentration stress on Typha latifolia growth and Pb removal in microcosm wetlands.

    Science.gov (United States)

    Han, Jianqiu; Chen, Fengzhen; Zhou, Yumei; Wang, Chaohua

    2015-01-01

    When constructed wetlands are used to treat high-Pb wastewater, Pb may become a stress to wetland plants, which subsequently reduces treatment performance and the other ecosystem services. To facilitate the design and operation of constructed wetlands for treatment of Pb-rich wastewater, we investigated the irreversible inhibitory level of Pb for Typha latifolia through experiments in microcosm wetlands. Seven horizontal subsurface flow constructed wetlands were built with rectangular plastic tanks and packed with marble chips and sand. All wetlands were transplanted with nine stems of Typha latifolia each. The wetlands were batch operated in a greenhouse with artificial wastewater (10 L each) for 12 days. Influent to the seven wetlands had different concentrations of Pb: 0 mg/L, 10 mg/L, 25 mg/L, 50 mg/L, 100 mg/L, 200 mg/L, and 500 mg/L, respectively. The results suggested that leaf chlorophyll relative content, relative growth rate, photosynthetic characteristics, activities of superoxide dismutase, peroxidase, and content of malondialdehyde were not affected when initial Pb concentration was at 100 mg/L and below. But when initial Pb concentration was above 100 mg/L, all of them were seriously affected. We conclude that high Pb concentrations wastewater could inhibit the growth of Typha latifolia and decrease the removal rate of wetlands.

  3. Aquaculture in artificially developed wetlands in urban areas: an application of the bivariate relationship between soil and surface water in landscape ecology.

    Science.gov (United States)

    Paul, Abhijit

    2011-01-01

    Wetlands show a strong bivariate relationship between soil and surface water. Artificially developed wetlands help to build landscape ecology and make built environments sustainable. The bheries, wetlands of eastern Calcutta (India), utilize the city sewage to develop urban aquaculture that supports the local fish industries and opens a new frontier in sustainable environmental planning research.

  4. Interactive effects of MnO2, organic matter and pH on abiotic formation of N2O from hydroxylamine in artificial soil mixtures

    Science.gov (United States)

    Liu, Shurong; Berns, Anne E.; Vereecken, Harry; Wu, Di; Brüggemann, Nicolas

    2017-02-01

    Abiotic conversion of the reactive nitrification intermediate hydroxylamine (NH2OH) to nitrous oxide (N2O) is a possible mechanism of N2O formation during nitrification. Previous research has demonstrated that manganese dioxide (MnO2) and organic matter (OM) content of soil as well as soil pH are important control variables of N2O formation in the soil. But until now, their combined effect on abiotic N2O formation from NH2OH has not been quantified. Here, we present results from a full-factorial experiment with artificial soil mixtures at five different levels of pH, MnO2 and OM, respectively, and quantified the interactive effects of the three variables on the NH2OH-to-N2O conversion ratio (RNH2OH-to-N2O). Furthermore, the effect of OM quality on RNH2OH-to-N2O was determined by the addition of four different organic materials with different C/N ratios to the artificial soil mixtures. The experiments revealed a strong interactive effect of soil pH, MnO2 and OM on RNH2OH-to-N2O. In general, increasing MnO2 and decreasing pH increased RNH2OH-to-N2O, while increasing OM content was associated with a decrease in RNH2OH-to-N2O. Organic matter quality also affected RNH2OH-to-N2O. However, this effect was not a function of C/N ratio, but was rather related to differences in the dominating functional groups between the different organic materials.

  5. Application of a mer-lux biosensor for estimating bioavailable mercury in soil

    DEFF Research Database (Denmark)

    Rasmussen, Lasse Dam; Sørensen, S. J.; Turner, R. R.

    2000-01-01

    A previously described bioassay using a mer-lux gene fusion for detection of bioavailable mercury was applied for the estimation of the bioavailable fraction of mercury in soil. The bioavailable fraction is defined here as being part of the water leachable fraction. Due to masking of light emission...... responses. The utility of the mer-lux biosensor assay was tested by relating measurements of bioavailable and total mercury to the response of the soil microbial community to mercury exposure. Two different soil types (an agricultural and a beech forest soil) were spiked with 2.5 µg Hg(II) g-1 in microcosms...... in resistance or diversity. This study showed that the bioassay using the mer-lux biosensor is a useful and sensitive tool for estimation of bioavailable mercury in soil....

  6. A microcosm for the breeding of plants under controlled conditions

    International Nuclear Information System (INIS)

    D'Aquino, Luigi; Maglione, Maria Grazia; Minarini, Carla; Pandolfi Giuseppe; Lanza, Bruno; Atrigna, Mauro; De Filippo, Giovanni; Giannotta, Giovanni; Pedicini Antonio; Aprano Salvatore

    2015-01-01

    In order to enhance studies of the effects of multiple stress on plant physiology laboratory scale, in collaboration with FOS Srl and Sesmat Srl and the project application for organic PON02 0 0556 3 420580 «SMARTAGS-SMARt TAGS 'was conceived, designed and built a 'microcosm for the breeding of plants under biotic and abiotic stress conditioning '. [it

  7. Abundance and activity of oil-degrading and indigenous bacteria in sediment microcosms

    International Nuclear Information System (INIS)

    Araujo, R.; Molina, M.; Bachoon, D.

    1995-01-01

    The responses of bacterial community composition and degradation crude oil to applications of bioremediation products and plant detrital material were investigated in wetlands microcosms. The microcosms were constructed of sieved sediments and operated as tidal marshes. Products included nutrients, organisms, surfactants and combinations thereof; dried ground Spartina was the source of detrital material. Plate count and most probable-number techniques were used to enumerate microbial populations and GC/MS analysis of indicator petroleum hydrocarbons was used to assess oil degradation. Microbial communities were characterized by whole-genome hybridization and specific probes for bacterial groups, including Pseudomonas, Streptomycetes, Vibrio, and sulfate-reducing bacteria. Although the total microbial numbers were similar in all bioremediation treatments, the numbers of oil degraders increased two to three log units in the fertilizer and microbial-degrader-enriched treatments. Oil-degraders comprised the largest fraction of the total population in the treatment amended with microbial degraders, apparently at the expense of indigenous bacteria, as indicated by specific probes. Oil-degraders were also detected in the subsurface in all treatments except the controls. The extent of oil degradation was not consistent with bacterial numbers; only nutrient additions resulted in significantly enhanced degradation of oil. After 1 month of microcosm operation, oil-degraders had increased at least two orders of magnitude in sediment surface layers when oil was added alone or with Spartina detritus, although total bacterial numbers and the number of oil-degraders decreased to near initial levels by 2 months. The peak coincides with bacterial utilization of the alkane fraction of petroleum hydrocarbons

  8. Bioremediation of 1,2-dichloroethane contaminated groundwater: Microcosm and microbial diversity studies

    International Nuclear Information System (INIS)

    Wang, S.Y.; Kuo, Y.C.; Huang, Y.Z.; Huang, C.W.; Kao, C.M.

    2015-01-01

    In this study, the effectiveness of bioremediating 1,2-dichloroethane (DCA)-contaminated groundwater under different oxidation–reduction processes was evaluated. Microcosms were constructed using indigenous bacteria and activated sludge as the inocula and cane molasses and a slow polycolloid-releasing substrate (SPRS) as the primary substrates. Complete DCA removal was obtained within 30 days under aerobic and reductive dechlorinating conditions. In anaerobic microcosms with sludge and substrate addition, chloroethane, vinyl chloride, and ethene were produced. The microbial communities and DCA-degrading bacteria in microcosms were characterized by 16S rRNA-based denatured-gradient-gel electrophoresis profiling and nucleotide sequence analyses. Real-time polymerase chain reaction was applied to evaluate the variations in Dehalococcoides spp. and Desulfitobacterium spp. Increase in Desulfitobacterium spp. indicates that the growth of Desulfitobacterium might be induced by DCA. Results indicate that DCA could be used as the primary substrate under aerobic conditions. The increased ethene concentrations imply that dihaloelimination was the dominate mechanism for DCA biodegradation. - Highlights: • DCA can be used as the primary substrate and degraded by the indigenous microbial consortia. • Reductive dechlorination of DCA can be enhanced by the supplement of substrates and sludge. • Dihaloelimination is the dominant mechanism for DCA dechlorination and ethene is the end product. • SPRS can serve as the primary substrate and creates anaerobic conditions for DCA dechlorination. • Reductive dechlorination is a feasible option for DCA-contaminated groundwater remediation. - DCA can serve as the primary substrate and degraded by indigenous bacteria aerobically. Dihaloelimination is the dominant mechanism and ethene is the end product via dechlorination

  9. Influence of Coal Ash Leachates and Emergent Macrophytes on Water Quality in Wetland Microcosms

    Data.gov (United States)

    U.S. Environmental Protection Agency — Influence of Coal Ash Leachates and Emergent Macrophytes on Water Quality in Wetland Microcosms. This dataset is associated with the following publication: Olson,...

  10. Culturing Toxic Benthic Blooms: The Fate of Natural Biofilms in a Microcosm System

    Directory of Open Access Journals (Sweden)

    Francesca Di Pippo

    2017-08-01

    Full Text Available A microcosm designed for culturing aquatic phototrophic biofilms on artificial substrata was used to perform experiments with microphytobenthos sampled during summer toxic outbreaks of Ostreopsis cf. ovata along the Middle Tyrrhenian coast. This dynamic approach aimed at exploring the unique and complex nature of O. cf. ovata bloom development in the benthic system. Epibenthic assemblages were used as inocula for co-cultures of bloom organisms on polycarbonate slides at controlled environmental conditions. Biofilm surface adhesion, growth, and spatial structure were evaluated along with shifts in composition and matrix production in a low disturbance regime, simulating source habitat. Initial adhesion and substratum colonisation appeared as stochastic processes, then community structure and physiognomy markedly changed with time. Dominance of filamentous cyanobacteria and diatoms, and dense clusters of Amphidinium cf. carterae at the mature biofilm phases, were recorded by light and confocal microscopy, whilst O. cf. ovata growth was visibly limited in the late culture phases. Life-form strategies, competitiveness for resources, and possibly allelopathic interactions shaped biofilm structure during culture growth. HPLC (High Performance Liquid Chromatography analysis of exopolysaccharidic matrix revealed variations in sugar total amounts and composition. No toxic compounds were detected in the final communities tested by LC-MS (Liquid Chromatography- Mass Spectrometry and MALDI-TOF MS (Matrix Assisted Laser Desorption Ionization Time OF Flight Mass Spectroscopy techniques.

  11. Soil seal development under simulated rainfall: Structural, physical and hydrological dynamics

    Science.gov (United States)

    Armenise, Elena; Simmons, Robert W.; Ahn, Sujung; Garbout, Amin; Doerr, Stefan H.; Mooney, Sacha J.; Sturrock, Craig J.; Ritz, Karl

    2018-01-01

    This study delivers new insights into rainfall-induced seal formation through a novel approach in the use of X-ray Computed Tomography (CT). Up to now seal and crust thickness have been directly quantified mainly through visual examination of sealed/crusted surfaces, and there has been no quantitative method to estimate this important property. X-ray CT images were quantitatively analysed to derive formal measures of seal and crust thickness. A factorial experiment was established in the laboratory using open-topped microcosms packed with soil. The factors investigated were soil type (three soils: silty clay loam - ZCL, sandy silt loam - SZL, sandy loam - SL) and rainfall duration (2-14 min). Surface seal formation was induced by applying artificial rainfall events, characterised by variable duration, but constant kinetic energy, intensity, and raindrop size distribution. Soil porosities derived from CT scans were used to quantify the thickness of the rainfall-induced surface seals and reveal temporal seal micro-morphological variations with increasing rainfall duration. In addition, the water repellency and infiltration dynamics of the developing seals were investigated by measuring water drop penetration time (WDPT) and unsaturated hydraulic conductivity (Kun). The range of seal thicknesses detected varied from 0.6 to 5.4 mm. Soil textural characteristics and OM content played a central role in the development of rainfall-induced seals, with coarser soil particles and lower OM content resulting in thicker seals. Two different trends in soil porosity vs. depth were identified: i) for SL soil porosity was lowest at the immediate soil surface, it then increased constantly with depth till the median porosity of undisturbed soil was equalled; ii) for ZCL and SL the highest reduction in porosity, as compared to the median porosity of undisturbed soil, was observed in a well-defined zone of maximum porosity reduction c. 0.24-0.48 mm below the soil surface. This

  12. Clay mineral type effect on bacterial enteropathogen survival in soil.

    Science.gov (United States)

    Brennan, Fiona P; Moynihan, Emma; Griffiths, Bryan S; Hillier, Stephen; Owen, Jason; Pendlowski, Helen; Avery, Lisa M

    2014-01-15

    Enteropathogens released into the environment can represent a serious risk to public health. Soil clay content has long been known to have an important effect on enteropathogen survival in soil, generally enhancing survival. However, clay mineral composition in soils varies, and different clay minerals have specific physiochemical properties that would be expected to impact differentially on survival. This work investigated the effect of clay materials, with a predominance of a particular mineral type (montmorillonite, kaolinite, or illite), on the survival in soil microcosms over 96 days of Listeria monocytogenes, Salmonella Dublin, and Escherichia coli O157. Clay mineral addition was found to alter a number of physicochemical parameters in soil, including cation exchange capacity and surface area, and this was specific to the mineral type. Clay mineral addition enhanced enteropathogen survival in soil. The type of clay mineral was found to differentially affect enteropathogen survival and the effect was enteropathogen-specific. © 2013.

  13. Effects of 137Cs and 90Sr on structure and functional aspects of the microflora in agricultural used soils

    International Nuclear Information System (INIS)

    Niedree, Bastian

    2013-01-01

    At long sight 137 Cs and 90 Sr are the main radionuclides responsible for the contamination of agricultural soils due to core melts in nuclear power plants such as Chernobyl or Fukushima. Once deposited on the soil surface, the two radionuclides remain in the upper soil layer for several decades. In the upper soil layer the highest microbial activity can be found, due to high organic matter contents, warm temperatures and gas exchange with the atmosphere. Hence, in contaminated soils microorganisms in upper soil layers (e.g. the plow layer on agricultural fields) are exceedingly exposed to radioactivity. However, no data are available how radioactive contaminations with 137 Cs or 90 Sr in a realistic order of magnitude affect the microbial community and its functions in soils. This dissertation discusses the effects of radioactive contaminations on the microbial community structure and some of its functions in soils. Therefore, typical agricultural soils, an Orthic Luvisol from field site Merzenhausen and a Gleyic Cambisol from field site Kaldenkirchen-Huelst were artificially contaminated with various concentrations of 137 Cs and 90 Sr and partly applied with radiolabeled substrates and incubated in soil microcosms under controlled laboratory conditions. The lower radionuclide concentrations corresponded to the contaminations in the Chernobyl exclusion zone, the higher concentrations were up to 50-fold that of the maximum occurring hotspots ( 137 Cs) in this zone. In three experiments the effects of the ionizing radiation on the bacterial and the fungal community structure (16S and 18S rDNA DGGE), the degradation of 14 C-labeled wheat straw or uniformly ring-labeled 2,4-dichlorophenoxyacetic acid, the development of the fungal biomass (ergosterol quantification) and the chemical composition of the soil organic matter ( 13 C CP/MAS NMR) were investigated. In half of the microcosms the soils were autoclaved and reinoculated with native soil, with intention to

  14. Fungi, bacteria and soil pH: the oxalate-carbonate pathway as a model for metabolic interaction.

    Science.gov (United States)

    Martin, Gaëtan; Guggiari, Matteo; Bravo, Daniel; Zopfi, Jakob; Cailleau, Guillaume; Aragno, Michel; Job, Daniel; Verrecchia, Eric; Junier, Pilar

    2012-11-01

    The oxalate-carbonate pathway involves the oxidation of calcium oxalate to low-magnesium calcite and represents a potential long-term terrestrial sink for atmospheric CO(2). In this pathway, bacterial oxalate degradation is associated with a strong local alkalinization and subsequent carbonate precipitation. In order to test whether this process occurs in soil, the role of bacteria, fungi and calcium oxalate amendments was studied using microcosms. In a model system with sterile soil amended with laboratory cultures of oxalotrophic bacteria and fungi, the addition of calcium oxalate induced a distinct pH shift and led to the final precipitation of calcite. However, the simultaneous presence of bacteria and fungi was essential to drive this pH shift. Growth of both oxalotrophic bacteria and fungi was confirmed by qPCR on the frc (oxalotrophic bacteria) and 16S rRNA genes, and the quantification of ergosterol (active fungal biomass) respectively. The experiment was replicated in microcosms with non-sterilized soil. In this case, the bacterial and fungal contribution to oxalate degradation was evaluated by treatments with specific biocides (cycloheximide and bronopol). Results showed that the autochthonous microflora oxidized calcium oxalate and induced a significant soil alkalinization. Moreover, data confirmed the results from the model soil showing that bacteria are essentially responsible for the pH shift, but require the presence of fungi for their oxalotrophic activity. The combined results highlight that the interaction between bacteria and fungi is essential to drive metabolic processes in complex environments such as soil. © 2012 Society for Applied Microbiology and Blackwell Publishing Ltd.

  15. Community structure and soil pH determine chemoautotrophic carbon dioxide fixation in drained paddy soils.

    Science.gov (United States)

    Long, Xi-En; Yao, Huaiying; Wang, Juan; Huang, Ying; Singh, Brajesh K; Zhu, Yong-Guan

    2015-06-16

    Previous studies suggested that microbial photosynthesis plays a potential role in paddy fields, but little is known about chemoautotrophic carbon fixers in drained paddy soils. We conducted a microcosm study using soil samples from five paddy fields to determine the environmental factors and quantify key functional microbial taxa involved in chemoautotrophic carbon fixation. We used stable isotope probing in combination with phospholipid fatty acid (PLFA) and molecular approaches. The amount of microbial (13)CO2 fixation was determined by quantification of (13)C-enriched fatty acid methyl esters and ranged from 21.28 to 72.48 ng of (13)C (g of dry soil)(-1), and the corresponding ratio (labeled PLFA-C:total PLFA-C) ranged from 0.06 to 0.49%. The amount of incorporationof (13)CO2 into PLFAs significantly increased with soil pH except at pH 7.8. PLFA and high-throughput sequencing results indicated a dominant role of Gram-negative bacteria or proteobacteria in (13)CO2 fixation. Correlation analysis indicated a significant association between microbial community structure and carbon fixation. We provide direct evidence of chemoautotrophic C fixation in soils with statistical evidence of microbial community structure regulation of inorganic carbon fixation in the paddy soil ecosystem.

  16. Radiological observation: 'remanence of radioactivity of artificial origin'. Mission report 2016

    International Nuclear Information System (INIS)

    Aubry, S.; Boulet, B.; Cagnat, X.; Cossonnet, C.; Mekhlouche, D.; Thomas, S.; Vivien, C.; Chevreuil, M.; Malfait, V.; Manach, E.; Claval, D.; Mourier, D.; Pourcelot, L.; Salaun, G.; Metivier, J.M.

    2016-04-01

    Thirty years after the Chernobyl accident, some areas in France, mainly mountain areas, display radioactivity levels higher or even much higher than those noticed in other areas, even at the vicinity of nuclear plants. These areas are called 'areas of remanence of artificial radioactivity'. After having recalled this observation based on radiological measurements, and an overview of an atmospheric deposition of artificial radioactivity (nuclear tests, Chernobyl accident, satellite falls, Fukushima accident), this report describes the adopted strategy (sampling and measurements) to assess and study this phenomenon. It analyses the obtained results in terms of remanence in the continental water environment and in soils, fields and forests. It also proposes a synthesis of previously acquired results. Appendices present methods used for sampling and sample processing, a list of samples, data related to mass activity of artificial radioactivity in soils, inventories of artificial radioactivity in soils, and methods for the calculation of efficient doses

  17. Feed Forward Artificial Neural Network Model to Estimate the TPH Removal Efficiency in Soil Washing Process

    Directory of Open Access Journals (Sweden)

    Hossein Jafari Mansoorian

    2017-01-01

    Full Text Available Background & Aims of the Study: A feed forward artificial neural network (FFANN was developed to predict the efficiency of total petroleum hydrocarbon (TPH removal from a contaminated soil, using soil washing process with Tween 80. The main objective of this study was to assess the performance of developed FFANN model for the estimation of   TPH removal. Materials and Methods: Several independent repressors including pH, shaking speed, surfactant concentration and contact time were used to describe the removal of TPH as a dependent variable in a FFANN model. 85% of data set observations were used for training the model and remaining 15% were used for model testing, approximately. The performance of the model was compared with linear regression and assessed, using Root of Mean Square Error (RMSE as goodness-of-fit measure Results: For the prediction of TPH removal efficiency, a FANN model with a three-hidden-layer structure of 4-3-1 and a learning rate of 0.01 showed the best predictive results. The RMSE and R2 for the training and testing steps of the model were obtained to be 2.596, 0.966, 10.70 and 0.78, respectively. Conclusion: For about 80% of the TPH removal efficiency can be described by the assessed regressors the developed model. Thus, focusing on the optimization of soil washing process regarding to shaking speed, contact time, surfactant concentration and pH can improve the TPH removal performance from polluted soils. The results of this study could be the basis for the application of FANN for the assessment of soil washing process and the control of petroleum hydrocarbon emission into the environments.

  18. Accumulation and Sublethal Effects of Triclosan and its Transformation Product Methyl-triclosan in the Earthworm Eisenia andrei Exposed to Environmental Concentrations in an Artificial Soil.

    Science.gov (United States)

    Chevillot, Fanny; Guyot, Mélanie; Desrosiers, Mélanie; Cadoret, Nicole; Veilleux, Éloïse; Cabana, Hubert; Bellenger, Jean-Philippe

    2018-04-18

    Municipal biosolids are increasingly used as a low-cost fertilizer in agricultural soil. Biosolids are contaminated by low concentrations (ng g -1 dw range) of a large variety of organic contaminants, such as triclosan (TCS). The effect of exposure to low concentrations of organic contaminants on soil biota remains largely undocumented. We evaluated the sublethal effects of TCS on the earthworm Eisenia andrei using an artificial soil amended with a nominal concentration of TCS of 50 ng g -1 dry weight soil. Using a 56-d reproduction test, we monitored the effect of TCS exposure on adult earthworm survival, growth, and reproduction. The bioaccumulation of TCS in earthworm tissue (adults and juveniles) and degradation of TCS were monitored. The genotoxicity of TCS was evaluated using a comet assay (DNA damage) on adult earthworm coelomocytes. Exposure to a low concentration of TCS had no significant effects on adult earthworm survival and DNA damage, but significantly stimulated growth (P increase in the number of cocoons and juveniles, and a decrease in the mean dry weight of juveniles. The bioaccumulation of TCS in earthworms was moderate (bioaccumulation factor ∼ 2). In biosolid-borne trials, the bioaccumulation of methyl-triclosan in earthworm tissues was higher than the parent compound TCS. We conclude that exposure to low concentrations of TCS in artificial soil can significantly affect the growth and reproductive performance of earthworms (i.e., E. andrei). More research is required with natural soils to assess TCS bioavailability for earthworms. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

  19. Phytoremediation modelling - phytoextraction of 137Cs, 133Ba, and 90Sr from liquid media and artificially contaminated soil

    International Nuclear Information System (INIS)

    Smrcek, S.; Masnerova, G.

    2002-01-01

    The phytoremediation model based on experiments with plants cultivated in vitro in media supplemented with radionuclide salts was investigated. The plant species Brassica napus, Sinapis alba, Helianthus annuus, Zea mays and Pisum sativum were cultivated on the Murashige-Skoog basal salt mixture enriched with salts of 137 Cs, 133 Ba, and 90 Sr in aseptic conditions. The time-dependent radioactivity decrease in the medium was determined using LSC, and the phytoextraction curves were plotted. Radioactivity in the plant roots and shoots was measured and the efficiency of phytoextraction and the distribution between the roots and shoots as a measure of radionuclide transport in the plant tissues were calculated for each of the plants used. Cultivation experiments were also performed on artificially contaminated soil. Seeds of the plants were placed into contaminated soil and cultivated for 2 months in conditions similar to those of the in vitro experiments. The extracted radioactivity and distribution between roots and shoots were determined. The in vitro experiments simulated extraction of the radionuclide salt from solution analogously to real extraction from the soil solution, while the processes occurring in the rhizosphere were eliminated. The phytoextraction efficiency in terms of the percentage of the starting radioactivity ranged from 12 to 31 % for 90 Sr, 8 to 24% for 137 Cs, and 12 to 17 % for 133 Ba in a cultivation cycle. The root/shoot radioactivity ratios demonstrate that the plant species used may be suitable for real phytoremediation. The experiments in which the plants were cultivated from seeds in artificial contaminated substrate showed that the ability of roots to extract radionuclide salts from their environment remains unchanged. The relative efficiency values were lower than for the extraction from solutions (3 to 11.5 % for 90 Sr, 1.5 to 4 % for 137 Cs, and 1 to 6.2 %, for 133 Ba), but in this process, the equilibrium between the soil particles

  20. Soil invertebrate fauna affect N2 O emissions from soil.

    Science.gov (United States)

    Kuiper, Imke; de Deyn, Gerlinde B; Thakur, Madhav P; van Groenigen, Jan Willem

    2013-09-01

    Nitrous oxide (N2 O) emissions from soils contribute significantly to global warming. Mitigation of N2 O emissions is severely hampered by a lack of understanding of its main controls. Fluxes can only partly be predicted from soil abiotic factors and microbial analyses - a possible role for soil fauna has until now largely been overlooked. We studied the effect of six groups of soil invertebrate fauna and tested the hypothesis that all of them increase N2 O emissions, although to different extents. We conducted three microcosm experiments with sandy soil and hay residue. Faunal groups included in our experiments were as follows: fungal-feeding nematodes, mites, springtails, potworms, earthworms and isopods. In experiment I, involving all six faunal groups, N2 O emissions declined with earthworms and potworms from 78.4 (control) to 37.0 (earthworms) or 53.5 (potworms) mg N2 O-N m(-2) . In experiment II, with a higher soil-to-hay ratio and mites, springtails and potworms as faunal treatments, N2 O emissions increased with potworms from 51.9 (control) to 123.5 mg N2 O-N m(-2) . Experiment III studied the effect of potworm density; we found that higher densities of potworms accelerated the peak of the N2 O emissions by 5 days (P soil aeration by the soil fauna reduced N2 O emissions in experiment I, whereas in experiment II N2 O emissions were driven by increased nitrogen and carbon availability. In experiment III, higher densities of potworms accelerated nitrogen and carbon availability and N2 O emissions, but did not increase them. Overall, our data show that soil fauna can suppress, increase, delay or accelerate N2 O emissions from soil and should therefore be an integral part of future N2 O studies. © 2013 John Wiley & Sons Ltd.

  1. Population dynamics of active and total ciliate populations in arable soil amended with wheat

    DEFF Research Database (Denmark)

    Ekelund, F.; Frederiksen, Helle B.; Ronn, R.

    2002-01-01

    of the population may be encysted. The factors governing the dynamics of active and encysted cells in the soil are not well understood. Our objective was to determine the dynamics of active and encysted populations of ciliates during the decomposition of freshly added organic material. We monitored, in soil...... microcosms, the active and total populations of ciliates, their potential prey (bacteria and small protozoa), their potential competitors (amoebae, flagellates, and nematodes), and their potential predators (nematodes). We sampled with short time intervals (2 to 6 days) and generated a data set, suitable...

  2. Plant uptake of radiocaesium from artificially contaminated soil monoliths covering major European soil types

    International Nuclear Information System (INIS)

    Waegeneers, Nadia; Sauras-Yera, Teresa; Thiry, Yves; Vallejo, V. Ramon; Smolders, Erik; Madoz-Escande, Chantal; Brechignac, Francois

    2009-01-01

    Uptake of 137 Cs was measured in different agricultural plant species (beans, lettuce, barley and ryegrass) grown in 5 undisturbed soil monoliths covering major European soil types. The first cultivation was made three years after soil contamination and plants were grown during 3 successive years. The plant-soil 137 Cs transfer factors varied maximally 12-fold among soils and 35-fold among species when grown on the same soil. Single correlations between transfer factors and soil properties were found, but they varied widely with plant type and can hardly be used as a predictive tool because of the few soils used. The variation of 137 Cs concentrations in plants among soils was related to differences in soil solution 137 Cs and K concentrations, consistent with previous observations in hydroponics and pot trials. Absolute values of transfer factors could not be predicted based on a model validated for pot trials. The 137 Cs activity concentration in soil solution decreased significantly (11- to 250-fold) for most soils in the 1997-1999 period and is partly explained by decreasing K in soil solution. Transfer factors of lettuce showed both increasing and decreasing trends between 2 consecutive years depending on soil type. The trends could be explained by the variation in 137 Cs and K concentrations in soil solution. It is concluded that differences in 137 Cs transfer factors among soils and trends in transfer factors as a function of time can be explained from soil solution composition, as shown previously for pot trials, although absolute values of transfer factors could not be predicted.

  3. Plant uptake of radiocaesium from artificially contaminated soil monoliths covering major European soil types

    Energy Technology Data Exchange (ETDEWEB)

    Waegeneers, Nadia [Laboratory for Soil and Water Management, Katholieke Universiteit Leuven, Kasteelpark Arenberg 20, B-3001 Heverlee (Belgium)], E-mail: nadia.waegeneers@agr.kuleuven.ac.be; Sauras-Yera, Teresa [Departament de Biologia Vegetal, Universitat de Barcelona, Av. Diagonal 645, 08028 Barcelona (Spain); Thiry, Yves [SCK.CEN, Radioecology Laboratory, Boeretang 200, B-2400 Mol (Belgium); Vallejo, V. Ramon [Departament de Biologia Vegetal, Universitat de Barcelona, Av. Diagonal 645, 08028 Barcelona (Spain); CEAM, Parque Tecnologico, Charles Darwin 14, 46980 Parterna (Spain); Smolders, Erik [Laboratory for Soil and Water Management, Katholieke Universiteit Leuven, Kasteelpark Arenberg 20, B-3001 Heverlee (Belgium); Madoz-Escande, Chantal; Brechignac, Francois [SERLAB, ISPN, Department for Environmental Protection, CE-Cadarache Batiment 159, Saint-Paul-lez-Durance Cedex 13108 (France)

    2009-06-15

    Uptake of {sup 137}Cs was measured in different agricultural plant species (beans, lettuce, barley and ryegrass) grown in 5 undisturbed soil monoliths covering major European soil types. The first cultivation was made three years after soil contamination and plants were grown during 3 successive years. The plant-soil {sup 137}Cs transfer factors varied maximally 12-fold among soils and 35-fold among species when grown on the same soil. Single correlations between transfer factors and soil properties were found, but they varied widely with plant type and can hardly be used as a predictive tool because of the few soils used. The variation of {sup 137}Cs concentrations in plants among soils was related to differences in soil solution {sup 137}Cs and K concentrations, consistent with previous observations in hydroponics and pot trials. Absolute values of transfer factors could not be predicted based on a model validated for pot trials. The {sup 137}Cs activity concentration in soil solution decreased significantly (11- to 250-fold) for most soils in the 1997-1999 period and is partly explained by decreasing K in soil solution. Transfer factors of lettuce showed both increasing and decreasing trends between 2 consecutive years depending on soil type. The trends could be explained by the variation in {sup 137}Cs and K concentrations in soil solution. It is concluded that differences in {sup 137}Cs transfer factors among soils and trends in transfer factors as a function of time can be explained from soil solution composition, as shown previously for pot trials, although absolute values of transfer factors could not be predicted.

  4. Aerobic composting reduces antibiotic resistance genes in cattle manure and the resistome dissemination in agricultural soils.

    Science.gov (United States)

    Gou, Min; Hu, Hang-Wei; Zhang, Yu-Jing; Wang, Jun-Tao; Hayden, Helen; Tang, Yue-Qin; He, Ji-Zheng

    2018-01-15

    Composting has been suggested as a potential strategy to eliminate antibiotic residues and pathogens in livestock manure before its application as an organic fertilizer in agro-ecosystems. However, the impacts of composting on antibiotic resistance genes (ARGs) in livestock manure and their temporal succession following the application of compost to land are not well understood. We examined how aerobic composting affected the resistome profiles of cattle manure, and by constructing laboratory microcosms we compared the effects of manure and compost application to agricultural soils on the temporal succession of a wide spectrum of ARGs. The high-throughput quantitative PCR array detected a total of 144 ARGs across all the soil, manure and compost samples, with Macrolide-Lincosamide-Streptogramin B, aminoglycoside, multidrug, tetracycline, and β-lactam resistance as the most dominant types. Composting significantly reduced the diversity and relative abundance of ARGs and mobile genetic elements (MGEs) in the cattle manure. In the 120-day microcosm incubation, the diversity and abundance of ARGs in manure-treated soils were significantly higher than those in compost-treated soils at the beginning of the experiment. The level of antibiotic resistance rapidly declined over time in all manure- and compost-treated soils, coupled with similar temporal patterns of manure- and compost-derived bacterial communities as revealed by SourceTracker analysis. The network analysis revealed more intensive interactions/associations among ARGs and MGEs in manure-treated soils than in compost-treated soils, suggesting that mobility potential of ARGs was lower in soils amended with compost. Our results provide evidence that aerobic composting of cattle manure may be an effective approach to mitigate the risk of antibiotic resistance propagation associated with land application of organic wastes. Copyright © 2017 Elsevier B.V. All rights reserved.

  5. A combined microcosm and mesocosm approach to examine factors affecting survival and mortality of Pseudomonas fluorescens Ag1 in seawater

    DEFF Research Database (Denmark)

    Ahl, Thomas; Christoffersen, K.; Riemann, B.

    1995-01-01

    .5‰). In microcosms with 0.2 µm-filtered seawater, addition of a carbon + nitrogen + phosphorus nutrient mixture was needed to induce proliferation of Ag1. In nutrient-amended microcosms the Ag1 population maintained viability, as determined by the direct viable counts method, at a level close to 100%. In natural...

  6. Effects of {sup 137}Cs and {sup 90}Sr on structure and functional aspects of the microflora in agricultural used soils

    Energy Technology Data Exchange (ETDEWEB)

    Niedree, Bastian

    2013-11-01

    At long sight {sup 137}Cs and {sup 90}Sr are the main radionuclides responsible for the contamination of agricultural soils due to core melts in nuclear power plants such as Chernobyl or Fukushima. Once deposited on the soil surface, the two radionuclides remain in the upper soil layer for several decades. In the upper soil layer the highest microbial activity can be found, due to high organic matter contents, warm temperatures and gas exchange with the atmosphere. Hence, in contaminated soils microorganisms in upper soil layers (e.g. the plow layer on agricultural fields) are exceedingly exposed to radioactivity. However, no data are available how radioactive contaminations with {sup 137}Cs or {sup 90}Sr in a realistic order of magnitude affect the microbial community and its functions in soils. This dissertation discusses the effects of radioactive contaminations on the microbial community structure and some of its functions in soils. Therefore, typical agricultural soils, an Orthic Luvisol from field site Merzenhausen and a Gleyic Cambisol from field site Kaldenkirchen-Huelst were artificially contaminated with various concentrations of {sup 137}Cs and {sup 90}Sr and partly applied with radiolabeled substrates and incubated in soil microcosms under controlled laboratory conditions. The lower radionuclide concentrations corresponded to the contaminations in the Chernobyl exclusion zone, the higher concentrations were up to 50-fold that of the maximum occurring hotspots ({sup 137}Cs) in this zone. In three experiments the effects of the ionizing radiation on the bacterial and the fungal community structure (16S and 18S rDNA DGGE), the degradation of {sup 14}C-labeled wheat straw or uniformly ring-labeled 2,4-dichlorophenoxyacetic acid, the development of the fungal biomass (ergosterol quantification) and the chemical composition of the soil organic matter ({sup 13}C CP/MAS NMR) were investigated. In half of the microcosms the soils were autoclaved and reinoculated

  7. Study of the dynamic of Bacillus species during of oil contaminated soil by PCR-DGGE

    Directory of Open Access Journals (Sweden)

    Mahmoud Shavandi

    2018-06-01

    Discussion and conclusion: Comparison of the pattern of DGGE bands variation between the microcosms showed that by entry of the contaminant into the soil, the diversity of Bacillus species was increased, indicating that Bacillus species has a particular role in diesel degradation. Simultaneous with decline of the pollution and microbial count of the soil, diversity of DGGE bands was decreased. Out of these findings we may conclude that addition of diesel as a carbon source to the soil increases the Bacillus spp. diversity at the beginning of bioremediation and afterwards by elimination of the pollutant, the diversity decreases gradually and shifts back to its original structure.

  8. Relating results from earthworm toxicity tests to agricultural soil

    Science.gov (United States)

    Beyer, W.N.; Greig-Smith, P.W.

    1992-01-01

    The artificial soil tests of the European Economic Community and of the Organization for Economic Cooperation produce data relating earthworm mortality to pesticide concentrations in soil under laboratory conditions. To apply these results to agricultural soils it is necessary to relate these concentrations to amounts of pesticide applied per area. This paper reviews the relevant published literature and suggests a simple relation for regulatory use. Hazards to earthworms from pesticides are suggested to be greatest soon after application, when the pesticides may be concentrated in a soil layer a few millimeters thick. For estimating exposure of earthworms, however, a thicker soil layer should be considered, to account for their movement through soil. During favorable weather conditions, earthworms belonging to species appropriate to the artificial soil test have been reported to confine their activity to a layer about 5 cm. If a 5-cm layer is accepted as relevant for regulatory purposes, then an application of 1 kg/ha would be equivalent to 1-67 ppm (dry) in the artificial soil test.

  9. Impact of triphenyltin acetate in microcosms simulating floodplain lakes; II comparison of species sensitivity distributions between laboratory and semi-field

    OpenAIRE

    Roessink, I.; Belgers, J.D.M.; Crum, S.J.H.; Brink, van den, P.J.; Brock, T.C.M.

    2006-01-01

    The study objectives were to shed light on the types of freshwater organism that are sensitive to triphenyltin acetate (TPT) and to compare the laboratory and microcosm sensitivities of the invertebrate community. The responses of a wide array of freshwater taxa (including invertebrates, phytoplankton and macrophytes) from acute laboratory Single Species Tests (SST) were compared with the concentration¿response relationships of aquatic populations in two types of freshwater microcosms. Repres...

  10. Effects of soil amendment with different carbon sources and other factors on the bioremediation of an aged PAH-contaminated soil.

    Science.gov (United States)

    Teng, Ying; Luo, Yongming; Ping, Lifeng; Zou, Dexun; Li, Zhengao; Christie, Peter

    2010-04-01

    Carbon supplementation, soil moisture and soil aeration are believed to enhance in situ bioremediation of PAH-contaminated soils by stimulating the growth of indigenous microorganisms. However, the effects of added carbon and nitrogen together with soil moisture and soil aeration on the dissipation of PAHs and on associated microbial counts have yet to be fully assessed. In this study the effects on bioremediation of carbon source, carbon-to-nitrogen ratio, soil moisture and aeration on an aged PAH-contaminated agricultural soil were studied in microcosms over a 90-day period. Additions of starch, glucose and sodium succinate increased soil bacterial and fungal counts and accelerated the dissipation of phenanthrene and benzo(a)pyrene in soil. Decreases in phenanthrene and benzo(a)pyrene concentrations were effective in soil supplemented with glucose and sodium succinate (both 0.2 g C kg(-1) dry soil) and starch (1.0 g C kg(-1) dry soil). The bioremediation effect at a C/N ratio of 10:1 was significantly higher (P Soil microbial counts and PAH dissipation were lower in the submerged soil but soil aeration increased bacterial and fungal counts, enhanced indigenous microbial metabolic activities, and accelerated the natural degradation of phenanthrene and benzo(a)pyrene. The results suggest that optimizing carbon source, C/N ratio, soil moisture and aeration conditions may be a feasible remediation strategy in certain PAH contaminated soils with large active microbial populations.

  11. Remediation of mercury-polluted soils using artificial wetlands.

    Science.gov (United States)

    García-Mercadoa, Héctor Daniel; Fernándezb, Georgina; Garzón-Zúñigac, Marco Antonio; Durán-Domínguez-de-Bazúaa, María Del Carmen

    2017-01-02

    Mexico's mercury mining industry is important for economic development, but has unfortunately contaminated soils due to open-air disposal. This case was seen at two sites in the municipality of Pinal de Amoles, State of Queretaro, Mexico. This paper presents an evaluation of mercury dynamics and biogeochemistry in two soils (mining waste soil) using ex-situ wetlands over 36 weeks. In soils sampled in two former mines of Pinal de Amoles, initial mercury concentrations were 424 ± 29 and 433 ± 12 mg kg -1 in La Lorena and San Jose, former mines, respectively. Typha latifolia and Phragmites australis were used and 20 reactors were constructed (with and without plants). The reactors were weekly amended with a nutrient solution (NPK), for each plant, at a pH of 5.0. For remediation using soils from San Jose 70-78% of mercury was removed in T. latifolia reactors and 76-82% in P. australis reactors, and for remediation of soils from La Lorena, mercury content was reduced by 55-71% using T. latifolia and 58-66% in P. australis reactors. Mercury emissions into the atmosphere were estimated to be 2-4 mg m -2 h -1 for both soils.

  12. Effects of lambda-cyhalothrin in two ditch microcosm systems of different trophic status

    NARCIS (Netherlands)

    Roessink, I.; Arts, G.H.P.; Belgers, J.D.M.; Bransen, F.F.J.; Maund, S.J.; Brock, T.C.M.

    2005-01-01

    The fate and effects of the pyrethroid insecticide lambda-cyhalothrin were compared in mesotrophic (macrophyte-dominated) and eutrophic (phytoplankton-dominated) ditch microcosms (0.5 m3). Lambda-cyhalothrin was applied three times at one-week intervals at concentrations of 10, 25, 50, 100, and 250

  13. Nitrification is a primary driver of nitrous oxide production in laboratory microcosms from different land-use soils

    Directory of Open Access Journals (Sweden)

    Rui Liu

    2016-09-01

    Full Text Available Most studies on soil N2O emissions have focused either on the quantifying of agricultural N2O fluxes or on the effect of environmental factors on N2O emissions. However very limited information is available on how land-use will affect N2O production, and nitrifiers involved in N2O emissions in agricultural soil ecosystems. Therefore, this study aimed at evaluating the relative importance of nitrification and denitrification to N2O emissions from different land-use soils and identifying the potential underlying microbial mechanisms. A 15N-tracing experiment was conducted under controlled laboratory conditions on four agricultural soils collected from different land-use. We measured N2O fluxes, nitrate (NO3− and ammonium (NH4+ concentration and15N2O, 15NO3− and 15NH4+ enrichment during the incubation. Quantitative PCR was used to quantify ammonia-oxidizing archaea (AOA and ammonia-oxidizing bacteria (AOB. Our results showed that nitrification was the main contributor to N2O production in soils from sugarcane, dairy pasture and cereal cropping systems, while denitrification played a major role in N2O production in the vegetable soil under the experimental conditions. Nitrification contributed to 96.7% of the N2O emissions in sugarcane soil followed by 71.3% in the cereal cropping soil and 70.9% in the dairy pasture soil, while only around 20.0% of N2O was produced from nitrification in vegetable soil. The proportion of nitrified nitrogen as N2O (PN2O value varied across different soils, with the highest PN2O value (0.26‰ found in the cereal cropping soil, which was around 10 times higher than that in other three systems. AOA were the abundant ammonia oxidizers, and were significantly correlated to N2O emitted from nitrification in the sugarcane soil, while AOB were significantly correlated with N2O emitted from nitrification in the cereal cropping soil. Our findings suggested that soil type and land-use might have strongly affected the

  14. Nitrification Is a Primary Driver of Nitrous Oxide Production in Laboratory Microcosms from Different Land-Use Soils.

    Science.gov (United States)

    Liu, Rui; Hu, Hangwei; Suter, Helen; Hayden, Helen L; He, Jizheng; Mele, Pauline; Chen, Deli

    2016-01-01

    Most studies on soil N2O emissions have focused either on the quantifying of agricultural N2O fluxes or on the effect of environmental factors on N2O emissions. However, very limited information is available on how land-use will affect N2O production, and nitrifiers involved in N2O emissions in agricultural soil ecosystems. Therefore, this study aimed at evaluating the relative importance of nitrification and denitrification to N2O emissions from different land-use soils and identifying the potential underlying microbial mechanisms. A (15)N-tracing experiment was conducted under controlled laboratory conditions on four agricultural soils collected from different land-use. We measured N2O fluxes, nitrate ([Formula: see text]), and ammonium ([Formula: see text]) concentration and (15)N2O, (15)[Formula: see text], and (15)[Formula: see text] enrichment during the incubation. Quantitative PCR was used to quantify ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB). Our results showed that nitrification was the main contributor to N2O production in soils from sugarcane, dairy pasture and cereal cropping systems, while denitrification played a major role in N2O production in the vegetable soil under the experimental conditions. Nitrification contributed to 96.7% of the N2O emissions in sugarcane soil followed by 71.3% in the cereal cropping soil and 70.9% in the dairy pasture soil, while only around 20.0% of N2O was produced from nitrification in vegetable soil. The proportion of nitrified nitrogen as N2O (PN2O-value) varied across different soils, with the highest PN2O-value (0.26‰) found in the cereal cropping soil, which was around 10 times higher than that in other three systems. AOA were the abundant ammonia oxidizers, and were significantly correlated to N2O emitted from nitrification in the sugarcane soil, while AOB were significantly correlated with N2O emitted from nitrification in the cereal cropping soil. Our findings suggested that soil

  15. Use of Hydrophilic Insoluble Polymers in the Restoration of Metal-Contaminated Soils

    Directory of Open Access Journals (Sweden)

    Guiwei Qu

    2009-01-01

    Full Text Available To develop cost-effective techniques that contribute to phytostabilization of severely metal-contaminated soils is a necessary task in environmental research. Hydrophilic insoluble polymers have been used for some time in diapers and other hygienic products and to increase the water-holding capacity of coarse-textured soils. These polymers contain groups, such as carboxyl groups, that are capable of forming bonds with metallic cations, thereby decreasing their bioavailability in soils. The use of polyacrylate polymers as soil amendments to restore metal-contaminated soils has been investigated in the Technical University of Lisbon since the late nineties. Plant growth and plant nutrients concentrations, extractable levels of metals in soil, and soil enzyme activities were used to monitor the improvement in soil quality following the application of these polymers. In contaminated soils, hydrophilic insoluble polymers can create microcosms that are rich in water and nutrients (counterions but only contain small concentrations of toxic elements; the conditions of these microenvironments are favorable to roots and microorganisms. In this paper we described the most relevant information available about this topic.

  16. Use of Hydrophilic Insoluble Polymers in the Restoration of Metal-Contaminated Soils

    International Nuclear Information System (INIS)

    Qu, G.; De Varennes, A.; Qu, G.

    2010-01-01

    To develop cost-effective techniques that contribute to phyto stabilization of severely metal-contaminated soils is a necessary task in environmental research. Hydrophilic insoluble polymers have been used for some time in diapers and other hygienic products and to increase the water-holding capacity of coarse-textured soils. These polymers contain groups, such as carboxyl groups, that are capable of forming bonds with metallic cations, thereby decreasing their bioavailability in soils. The use of polyacrylate polymers as soil amendments to restore metal-contaminated soils has been investigated in the Technical University of Lisbon since the late nineties. Plant growth and plant nutrients concentrations, extractable levels of metals in soil, and soil enzyme activities were used to monitor the improvement in soil quality following the application of these polymers. In contaminated soils, hydrophilic insoluble polymers can create microcosms that are rich in water and nutrients (counterions) but only contain small concentrations of toxic elements; the conditions of these micro environments are favorable to roots and microorganisms. In this paper we described the most relevant information available about this topic.

  17. Artificial resuspension studies

    International Nuclear Information System (INIS)

    Cooper, B.M.; Marchall, K.B.; Thomas, K.A.; Tracy, B.L.

    1990-01-01

    Artificial resuspension studies on a range of Taranaki and other major trial site soils were performed by use of a mechanical dust-raising apparatus. A cascade impactor was used to analyse airborne dust in terms of mass and 241 Am activities for particle sizes less than 7 μm. Plutonium and americium activities were found to be enhanced in the respirable fraction. Reported enhancement factors (defined as the ratio of activity concentration of the respirable fraction to that of the total soil) ranged from 3.7 to 32.5 for Taranaki soils with an average value of 6 appearing reasonable for general application in outer (plume) areas. Values close to unity were measured at major trial sites , One Tree and Tadje. Results of some experiments where uncontamined dust was raised by activities such as walking and driving over dusty ground are also presented. 7 refs., 9 tabs., 4 figs

  18. Poultry manure effects on soil organisms

    International Nuclear Information System (INIS)

    Delgado, M.; Martin, J. V.; Miralles de Imperial, R.; Leon-Cofreces, C.; Garcia, M. C.

    2009-01-01

    A study has been made to value the effects produces on the organisms of the ground (plants, invertebrates and microorganisms), after the application of two types of poultry manure (bed wood shaving or straw) on an agricultural ground. The use doses respond to agronomic and non environmental considerations. The test was made using a terrestrial microcosms, Multi-Species Soil System (MS.3) developed in the Environment department of the INIA, tool that allows in a single test to value of joint form, the effects of organic remainders on representative organisms of the ground. (Author) 1 refs.

  19. Dynamics of indigenous bacterial communities associated with crude oil degradation in soil microcosms during nutrient-enhanced bioremediation.

    Science.gov (United States)

    Chikere, Chioma B; Surridge, Karen; Okpokwasili, Gideon C; Cloete, Thomas E

    2012-03-01

    Bacterial population dynamics were examined during bioremediation of an African soil contaminated with Arabian light crude oil and nutrient enrichment (biostimulation). Polymerase chain reaction followed by denaturing gradient gel electrophoresis (DGGE) were used to generate bacterial community fingerprints of the different treatments employing the 16S ribosomal ribonucleic acid (rRNA) gene as molecular marker. The DGGE patterns of the nutrient-amended soils indicated the presence of distinguishable bands corresponding to the oil-contaminated-nutrient-enriched soils, which were not present in the oil-contaminated and pristine control soils. Further characterization of the dominant DGGE bands after excision, reamplification and sequencing revealed that Corynebacterium spp., Dietzia spp., Rhodococcus erythropolis sp., Nocardioides sp., Low G+C (guanine plus cytosine) Gram positive bacterial clones and several uncultured bacterial clones were the dominant bacterial groups after biostimulation. Prominent Corynebacterium sp. IC10 sequence was detected across all nutrient-amended soils but not in oil-contaminated control soil. Total heterotrophic and hydrocarbon utilizing bacterial counts increased significantly in the nutrient-amended soils 2 weeks post contamination whereas oil-contaminated and pristine control soils remained fairly stable throughout the experimental period. Gas chromatographic analysis of residual hydrocarbons in biostimulated soils showed marked attenuation of contaminants starting from the second to the sixth week after contamination whereas no significant reduction in hydrocarbon peaks were seen in the oil-contaminated control soil throughout the 6-week experimental period. Results obtained indicated that nutrient amendment of oil-contaminated soil selected and enriched the bacterial communities mainly of the Actinobacteria phylogenetic group capable of surviving in toxic contamination with concomitant biodegradation of the hydrocarbons. The

  20. Effects of bleaching wastewater irrigation on soil quality of constructed reed wetlands

    Directory of Open Access Journals (Sweden)

    Cheng Ding

    2016-10-01

    Full Text Available Constructed reed wetland microcosms (CRWs in a lab of east China have been irrigated with bleaching wastewater per month for a reed growth season. The soil physicochemical properties, enzyme activities (i.e. urease, invertase, polyphenol oxidase, alkaline phosphatase and cellulase and soil microbial diversity were assayed before and after the exposure experiment. Compared to the river water irrigated controls (CKs, bleaching wastewater application has no marked influence on soil pH, but significantly increased soil Na+, total halogen and absorbable organic halogen (AOX contents, which induced the increasing of soil electrical conductivity. Furthermore, soil enzyme activities displayed significant variation (except for polyphenol oxidase. Bleaching wastewater irrigation decreased Sorenson’s pairwise similarity coefficient (Cs, which indicated the changes of the structure of bacterial and fungal communities. However, only the diversity of bacterial community was inhibited and has no effect on the diversity of fungal community, as evidenced by the calculated Shannon–Wiener index (H.

  1. Dental plaque microcosm biofilm behavior on calcium phosphate nanocomposite with quaternary ammonium.

    Science.gov (United States)

    Cheng, Lei; Weir, Michael D; Zhang, Ke; Wu, Eric J; Xu, Sarah M; Zhou, Xuedong; Xu, Hockin H K

    2012-08-01

    Half of dental restorations fail in 10 years, with secondary caries as the main reason. Calcium phosphate composites could remineralize tooth lesions. The objectives of this study were to: (1) impart antibacterial activity to a composite with nanoparticles of amorphous calcium phosphate (NACP); and (2) investigate the effect of quaternary ammonium dimethacrylate (QADM) on mechanical and dental plaque microcosm biofilm properties for the first time. The NACP and glass particles were filled into a dental resin that contained bis(2-methacryloyloxy-ethyl) dimethyl-ammonium bromide, the QADM. NACP nanocomposites containing 0%, 7%, 14%, and 17.5% of QADM by mass, respectively, were photo-cured. A commercial composite with no antibacterial activity was used as control. Mechanical properties were measured in three-point flexure. A human saliva microcosm model was used to grow biofilms on composites. Live/dead assay, metabolic activity, colony-forming unit (CFU) counts, and lactic acid production of biofilms on the composites were measured. Increasing QADM mass fraction monotonically reduced the biofilm viability, CFU and lactic acid. Biofilms on NACP nanocomposite with 17.5% QADM had metabolic activity that was 30% that on a commercial composite control (pbacterial cells with normal short-rod shapes, while some cells on NACP-QADM nanocomposites disintegrated into pieces. Adding QADM to NACP did not decrease the composite strength and elastic modulus, which matched (p>0.1) those of a commercial composite without Ca-PO(4) or antibacterial activity. A dental plaque microcosm model was used to evaluate the novel NACP-QADM nanocomposite. The nanocomposite greatly reduced the biofilm viability, metabolic activity and lactic acid, while its mechanical properties matched those of a commercial composite. NACP-QADM nanocomposite with calcium phosphate fillers, good mechanical properties and a strong antibacterial activity may have potential for anti-biofilm and anti

  2. Artificial radionuclides in soil, flora and fauna

    International Nuclear Information System (INIS)

    Marej, A.N.

    1984-01-01

    Sources and ways of soil contamination by radionuclides, as well as the main regularities of radionuclide behaviour in soils, are discussed. Ways of radionuclide uptake by plants are discussed in detail, since radionuclide contamination of vegetation, and agricultural plants and pastures in particular, is one of the main factors, determining sanitary value of environmental contamination by radioactive substances

  3. Soil Nematode Response to Biochar Addition in a Chinese Wheat Field

    Institute of Scientific and Technical Information of China (English)

    ZHANG Xiao-Ke; LI Qi; LIANG Wen-Ju; ZHANG Min; BAO Xue-Lian; XIE Zu-Bin

    2013-01-01

    While studies have focused on the use of biochar as soil amendment,little attention has been paid to its effect on soil fauna.The biochar was produced from slow pyrolysis of wheat straw in the present study.Four treatments,no addition (CK) and three rates of biochar addition at 2400 (B1),12000 (B5) and 48000 kg ha-1 (B20),were investigated to assess the effect of biochar addition to soil on nematode abundance and diversity in a microcosm trial in China.The B5 and B20 application significantly increased the total organic carbon and the C/N ratio.No significant difference in total nematode abundance was found among the treatments.The biochar addition to the soil significantly increased the abundance of fungivores,and decreased that of plant parasites.The diversity of soil nematodes was significantly increased by B1 compared to CK.Nematode trophic groups were more effectively indicative to biochar addition than total abundance.

  4. Dissecting Solidago canadensis-soil feedback in its real invasion.

    Science.gov (United States)

    Dong, Li-Jia; Yang, Jian-Xia; Yu, Hong-Wei; He, Wei-Ming

    2017-04-01

    The importance of plant-soil feedback (PSF) has long been recognized, but the current knowledge on PSF patterns and the related mechanisms mainly stems from laboratory experiments. We aimed at addressing PSF effects on community performance and their determinants using an invasive forb Solidago canadensis . To do so, we surveyed 81 pairs of invaded versus uninvaded plots, collected soil samples from these pairwise plots, and performed an experiment with microcosm plant communities. The magnitudes of conditioning soil abiotic properties and soil biotic properties by S. canadensis were similar, but the direction was opposite; altered abiotic and biotic properties influenced the production of subsequent S. canadensis communities and its abundance similarly. These processes shaped neutral S. canadensis -soil feedback effects at the community level. Additionally, the relative dominance of S. canadensis increased with its ability of competitive suppression in the absence and presence of S. canadensis -soil feedbacks, and S. canadensis -induced decreases in native plant species did not alter soil properties directly. These findings provide a basis for understanding PSF effects and the related mechanisms in the field conditions and also highlight the importance of considering PSFs holistically.

  5. Biocide Runoff from Building Facades: Degradation Kinetics in Soil.

    Science.gov (United States)

    Bollmann, Ulla E; Fernández-Calviño, David; Brandt, Kristian K; Storgaard, Morten S; Sanderson, Hans; Bester, Kai

    2017-04-04

    Biocides are common additives in building materials. In-can and film preservatives in polymer-resin render and paint, as well as wood preservatives are used to protect facade materials from microbial spoilage. Biocides leach from the facade material with driving rain, leading to highly polluted runoff water (up to several mg L -1 biocides) being infiltrated into the soil surrounding houses. In the present study the degradation rates in soil of 11 biocides used for the protection of building materials were determined in laboratory microcosms. The results show that some biocides are degraded rapidly in soil (e.g., isothiazolinones: T 1/2 soils; thus, rainfall events control how often new input to the soil occurs. Time intervals between rainfall events in Northern Europe are shorter than degradation half-lives even for many rapidly degraded biocides. Consequently, residues of some biocides are likely to be continuously present due to repeated input and most biocides can be considered as "pseudo-persistent"-contaminants in this context. This was verified by (sub)urban soil screening, where concentrations of up to 0.1 μg g -1 were detected for parent compounds as well as terbutryn degradation products in soils below biocide treated facades.

  6. Microbial decomposition of dead grassland roots and its influence on the carbon cycle under changing precipitation patterns

    Science.gov (United States)

    Becerra, C.; Schimel, J.

    2013-12-01

    Soil is the largest reservoir of organic carbon in terrestrial ecosystems and as such, represents a potential sink for carbon dioxide.The decomposition products of dead roots buried in the soil is a contributor to soil organic carbon. However, changing precipitation patterns may affect its fate by influencing the microbial community responsible for decomposing dead roots. To assess the impact of changing precipitation patterns, we constructed microcosms with grassland soil collected from the UCSB Sedgwick Reserve, an active and long-term research site, and dead roots from greenhouse-grown grass, Bromus diandrus. Microcosms were wetted continuously, every seven days, or every twenty days. Sets of microcosms were periodically deconstructed to assess the soil versus the roots-associated microbial community and its function. Differences in respiration rates of microcosms continuously wetted or wetted every 7 days versus microcosms wetted every 20 days existed for the first 70 days. After which, no differences in respiration rates were seen with microcosms containing roots and the no roots control. Relatedly, after a 70% roots mass loss by day 50, there was no difference in the respiration rate of microcosms containing roots and the no roots control. More than half of the roots mass loss had occurred by 30 days. By the end of the incubation period, the roots mass loss in continuously wet and 7-day wetted microcosms were over 80% compared to 67% for the microcosms wetted every 20 days. Microbial biomass in the soil were constant over time and showed no difference in treatment except with the no roots control during the first half of the incubation period. Hydrolytic enzyme activities (β-1,4-glucosidase; α-1,4-glucosidase; β-1,4-xylosidase; β-1,4-cellobiosidase) on the roots versus the soil attached to the roots were over an order greater and decreased faster with the exception of N-acetyl-glucosaminidase and acid phosphatase. Oxidative enzyme activities (phenol

  7. Bioremediation of soils containing petroleum hydrocarbons, chlorinated phenols, and polycyclic aromatic hydrocarbons

    International Nuclear Information System (INIS)

    Seech, A.; Burwell, S.; Marvan, I.

    1994-01-01

    Bench-scale treatability investigations, pilot-scale and full-scale bioremediation projects were conducted to evaluate Daramend trademark bioremediation of soils containing petroleum hydrocarbons, heavy oils, paraffins, chlorinated phenols and polycyclic aromatic hydrocarbons (PAHs). Bench-scale investigations were conducted using glass microcosms. Pilot-scale and full-scale demonstrations were conducted at industrial sites and included treatment of excavated soils and sediments in on-site cells constructed using synthetic liners and covered by steel/polyethylene structures as well as in-situ treatment. A total of approximately 5,000 tons of soil was treated. The soil treatment included organic soil amendments, specialized tillage/aeration apparatus, and strict control of soil moisture. The amendments are composed of naturally-occurring organic materials prepared to soil-specific particle size distributions, nutrient profiles, and nutrient-release kinetics. Bench-scale work indicated that in refinery soil containing high concentrations of heavy oils, extractable hydrocarbon concentrations could be rapidly reduced to industrial clean-up criteria, and that the hydrocarbons were fully mineralized with release of CO 2

  8. Effects of artificial defoliation of pines on the structure and physiology of the soil fungal community of a mixed pine-spruce forest

    Science.gov (United States)

    Cullings, Ken; Raleigh, Christopher; New, Michael H.; Henson, Joan

    2005-01-01

    Loss of photosynthetic area can affect soil microbial communities by altering the availability of fixed carbon. We used denaturing gradient gel electrophoresis (DGGE) and Biolog filamentous-fungus plates to determine the effects of artificial defoliation of pines in a mixed pine-spruce forest on the composition of the fungal community in a forest soil. As measured by DGGE, two fungal species were affected significantly by the defoliation of pines (P soil fungus increased. The decrease in the amount of Cenococcum organisms may have occurred because of the formation of extensive hyphal networks by species of this genus, which require more of the carbon fixed by their host, or because this fungus is dependent upon quantitative differences in spruce root exudates. The defoliation of pines did not affect the overall composition of the soil fungal community or fungal-species richness (number of species per core). Biolog filamentous-fungus plate assays indicated a significant increase (P soil fungi and the rate at which these substrates were used, which could indicate an increase in fungal-species richness. Thus, either small changes in the soil fungal community give rise to significant increases in physiological capabilities or PCR bias limits the reliability of the DGGE results. These data indicate that combined genetic and physiological assessments of the soil fungal community are needed to accurately assess the effect of disturbance on indigenous microbial systems.

  9. Time Series Analysis of Soil Radon Data Using Multiple Linear Regression and Artificial Neural Network in Seismic Precursory Studies

    Science.gov (United States)

    Singh, S.; Jaishi, H. P.; Tiwari, R. P.; Tiwari, R. C.

    2017-07-01

    This paper reports the analysis of soil radon data recorded in the seismic zone-V, located in the northeastern part of India (latitude 23.73N, longitude 92.73E). Continuous measurements of soil-gas emission along Chite fault in Mizoram (India) were carried out with the replacement of solid-state nuclear track detectors at weekly interval. The present study was done for the period from March 2013 to May 2015 using LR-115 Type II detectors, manufactured by Kodak Pathe, France. In order to reduce the influence of meteorological parameters, statistical analysis tools such as multiple linear regression and artificial neural network have been used. Decrease in radon concentration was recorded prior to some earthquakes that occurred during the observation period. Some false anomalies were also recorded which may be attributed to the ongoing crustal deformation which was not major enough to produce an earthquake.

  10. Insecticide applications to soil contribute to the development of Burkholderia mediating insecticide resistance in stinkbugs.

    Science.gov (United States)

    Tago, Kanako; Kikuchi, Yoshitomo; Nakaoka, Sinji; Katsuyama, Chie; Hayatsu, Masahito

    2015-07-01

    Some soil Burkholderia strains are capable of degrading the organophosphorus insecticide, fenitrothion, and establish symbiosis with stinkbugs, making the host insects fenitrothion-resistant. However, the ecology of the symbiotic degrading Burkholderia adapting to fenitrothion in the free-living environment is unknown. We hypothesized that fenitrothion applications affect the dynamics of fenitrothion-degrading Burkholderia, thereby controlling the transmission of symbiotic degrading Burkholderia from the soil to stinkbugs. We investigated changes in the density and diversity of culturable Burkholderia (i.e. symbiotic and nonsymbiotic fenitrothion degraders and nondegraders) in fenitrothion-treated soil using microcosms. During the incubation with five applications of pesticide, the density of the degraders increased from less than the detection limit to around 10(6)/g of soil. The number of dominant species among the degraders declined with the increasing density of degraders; eventually, one species predominated. This process can be explained according to the competitive exclusion principle using V(max) and K(m) values for fenitrothion metabolism by the degraders. We performed a phylogenetic analysis of representative strains isolated from the microcosms and evaluated their ability to establish symbiosis with the stinkbug Riptortus pedestris. The strains that established symbiosis with R. pedestris were assigned to a cluster including symbionts commonly isolated from stinkbugs. The strains outside the cluster could not necessarily associate with the host. The degraders in the cluster predominated during the initial phase of degrader dynamics in the soil. Therefore, only a few applications of fenitrothion could allow symbiotic degraders to associate with their hosts and may cause the emergence of symbiont-mediated insecticide resistance. © 2015 John Wiley & Sons Ltd.

  11. Fate and effects of the insecticide chlorpyrifos in outdoor plankton-dominated microcosms in Thailand.

    NARCIS (Netherlands)

    Daam, M.A.; Crum, S.J.H.; Brink, van den P.J.; Nogueira, A.J.A.

    2008-01-01

    The fate and effects of the insecticide chlorpyrifos were studied in plankton-dominated, freshwater microcosms in Thailand. Disappearance rates of chlorpyrifos from the water column in the present study were similar to those in temperate regions. Insecticide accumulation in the sediment was

  12. Natural and artificial radioactivity in soils of forests

    International Nuclear Information System (INIS)

    Alvarado, E.; Segovia, N.; Gaso P, M.I.; Pena, P.; Morton, O.; Armienta, M.A.

    2001-01-01

    Levels of 222 Rn, 40 K, 235 U, 226 Ra and 137 Cs were studied in soils of a forest zone located at 3000 m altitude in the central portion of Mexico. the radon concentrations in different soil horizons were determined with solid state nuclear track detectors and the concentrations of 40 K, 235 U, 226 Ra and 137 Cs in soil samples were measured with a gamma spectrometer at low level coupled to a High purity Ge detector. The results indicate differences of a magnitude order in the radon concentrations inside the studied area. The levels of 40 K, 235 U, 226 Ra and 137 Cs are discussed as function of the perturbation grade of the soil and atmospheric pollution. (Author)

  13. Comparison of metals and tetracycline as selective agents for development of tetracycline resistant bacterial communities in agricultural soil

    DEFF Research Database (Denmark)

    Song, Jianxiao; Rensing, Christopher; Holm, Peter Engelund

    2017-01-01

    Environmental selection of antibiotic resistance may be caused by either antibiotic residues or coselecting agents. Using a strictly controlled experimental design, we compared the ability of metals (Cu or Zn) and tetracycline to (co)select for tetracycline resistance in bacterial communities. Soil...... microcosms were established by amending agricultural soil with known levels of Cu, Zn, or tetracycline known to represent commonly used metals and antibiotics for pig farming. Soil bacterial growth dynamics and bacterial community-level tetracycline resistance were determined using the [(3)H......]leucine incorporation technique, whereas soil Cu, Zn, and tetracycline exposure were quantified by a panel of whole-cell bacterial bioreporters. Tetracycline resistance increased significantly in soils containing environmentally relevant levels of Cu (≥365 mg kg(-1)) and Zn (≥264 mg kg(-1)) but not in soil spiked...

  14. Uncovering stability mechanisms in microbial ecosystems - combining microcosm experiments, computational modelling and ecological theory in a multidisciplinary approach

    Science.gov (United States)

    Worrich, Anja; König, Sara; Banitz, Thomas; Centler, Florian; Frank, Karin; Kästner, Matthias; Miltner, Anja; Thullner, Martin; Wick, Lukas

    2015-04-01

    Although bacterial degraders in soil are commonly exposed to fluctuating environmental conditions, the functional performance of the biodegradation processes can often be maintained by resistance and resilience mechanisms. However, there is still a gap in the mechanistic understanding of key factors contributing to the stability of such an ecosystem service. Therefore we developed an integrated approach combining microcosm experiments, simulation models and ecological theory to directly make use of the strengths of these disciplines. In a continuous interplay process, data, hypotheses, and central questions are exchanged between disciplines to initiate new experiments and models to ultimately identify buffer mechanisms and factors providing functional stability. We focus on drying and rewetting-cycles in soil ecosystems, which are a major abiotic driver for bacterial activity. Functional recovery of the system was found to depend on different spatial processes in the computational model. In particular, bacterial motility is a prerequisite for biodegradation if either bacteria or substrate are heterogeneously distributed. Hence, laboratory experiments focussing on bacterial dispersal processes were conducted and confirmed this finding also for functional resistance. Obtained results will be incorporated into the model in the next step. Overall, the combination of computational modelling and laboratory experiments identified spatial processes as the main driving force for functional stability in the considered system, and has proved a powerful methodological approach.

  15. Science museum staff taking part in the ECSITE 2018 conference visit Microcosm

    CERN Multimedia

    AUTHOR|(CDS)2070299; Ordan, Julien Marius

    2018-01-01

    Science museum staff taking part in the ECSITE 2018 conference visit Microcosm with Marta Bajko and Dwayne Spiteri guiding. https://cern.service-now.com/nav_to.do?uri=u_request_fulfillment.do%3Fsys_id=ae774fec4fa653401bb8c0501310c748%26sysparm_stack=u_request_fulfillment_list.do%3Fsysparm_query=active=true

  16. Systems identification: a theoretical method applied to tracer kinetics in aquatic microcosms

    International Nuclear Information System (INIS)

    Halfon, E.; Georgia Univ., Athens

    1974-01-01

    A mathematical model of radionuclide kinetics in a laboratory microcosm was built and the transfer parameters estimated by multiple regression and system identification techniques. Insight into the functioning of the system was obtained from analysis of the model. Methods employed have allowed movements of radioisotopes not directly observable in the experimental systems to be distinguished. Results are generalized to whole ecosystems

  17. Soil enzyme dynamics in chlorpyrifos-treated soils under the influence of earthworms.

    Science.gov (United States)

    Sanchez-Hernandez, Juan C; Notario Del Pino, J; Capowiez, Yvan; Mazzia, Christophe; Rault, Magali

    2018-01-15

    Earthworms contribute, directly and indirectly, to contaminant biodegradation. However, most of bioremediation studies using these annelids focus on pollutant dissipation, thus disregarding the health status of the organism implied in bioremediation as well as the recovery of indicators of soil quality. A microcosm study was performed using Lumbricus terrestris to determine whether earthworm density (2 or 4individuals/kg wet soil) and the time of exposure (1, 2, 6, 12, and 18wk) could affect chlorpyrifos persistence in soil initially treated with 20mg active ingredientkg -1 wet soil. Additionally, selected earthworm biomarkers and soil enzyme activities were measured as indicators of earthworm health and soil quality, respectively. After an 18-wk incubation period, no earthworm was killed by the pesticide, but clear signs of severe intoxication were detected, i.e., 90% inhibition in muscle acetylcholinesterase and carboxylesterase (CbE) activities. Unexpectedly, the earthworm density had no significant impact on chlorpyrifos dissipation rate, for which the measured half-life ranged between 30.3d (control soils) and 44.5d (low earthworm density) or 36.7d (high earthworm density). The dynamic response of several soil enzymes to chlorpyrifos exposure was examined calculating the geometric mean and the treated-soil quality index, which are common enzyme-based indexes of microbial functional diversity. Both indexes showed a significant and linear increase of the global enzyme response after 6wk of chlorpyrifos treatment in the presence of earthworms. Examination of individual enzymes revealed that soil CbE activity could decrease chlorpyrifos-oxon impact upon the rest of enzyme activities. Although L. terrestris was found not to accelerate chlorpyrifos dissipation, a significant increase in the activity of soil enzyme activities was achieved compared with earthworm-free, chlorpyrifos-treated soils. Therefore, the inoculation of organophosphorus-contaminated soils with L

  18. Assessing Rainfall Erosivity with Artificial Neural Networks for the Ribeira Valley, Brazil

    Directory of Open Access Journals (Sweden)

    Reginald B. Silva

    2010-01-01

    Full Text Available Soil loss is one of the main causes of pauperization and alteration of agricultural soil properties. Various empirical models (e.g., USLE are used to predict soil losses from climate variables which in general have to be derived from spatial interpolation of point measurements. Alternatively, Artificial Neural Networks may be used as a powerful option to obtain site-specific climate data from independent factors. This study aimed to develop an artificial neural network to estimate rainfall erosivity in the Ribeira Valley and Coastal region of the State of São Paulo. In the development of the Artificial Neural Networks the input variables were latitude, longitude, and annual rainfall and a mathematical equation of the activation function for use in the study area as the output variable. It was found among other things that the Artificial Neural Networks can be used in the interpolation of rainfall erosivity values for the Ribeira Valley and Coastal region of the State of São Paulo to a satisfactory degree of precision in the estimation of erosion. The equation performance has been demonstrated by comparison with the mathematical equation of the activation function adjusted to the specific conditions of the study area.

  19. Effect of toxic metals on indigenous soil ß-subgroup proteobacterium ammonia oxidizer community structure and protection against toxicity by inoculated metal-resistant bacteria

    NARCIS (Netherlands)

    Stephen, J.R.; Chang, Y.J.; MacNaughton, S.J.; Kowalchuk, G.A.; Leung, K.T.; Flemming, C.A.; White, D.C.

    1999-01-01

    Contamination of soils with toxic metals is a major problem on military, industrial, and mining sites worldwide. Of particular interest to the field of bioremediation is the selection of biological markers for the end point of remediation, In this microcosm study, we focus on the effect of addition

  20. Removal effectiveness and mechanisms of naphthalene and heavy metals from artificially contaminated soil by iron chelate-activated persulfate

    International Nuclear Information System (INIS)

    Yan, Dickson Y.S.; Lo, Irene M.C.

    2013-01-01

    The effectiveness and mechanisms of naphthalene and metal removal from artificially contaminated soil by FeEDTA/FeEDDS-activated persulfate were investigated through batch experiments. Using FeEDTA-activated persulfate, higher naphthalene removal from the soil at 7 h was achieved (89%), compared with FeEDDS-activated persulfate (75%). The removal was mainly via the dissolution of naphthalene partitioned on mineral surfaces, followed by activated persulfate oxidation. Although EDDS is advantageous over EDTA in terms of biodegradability, it is not preferable for iron chelate-activated persulfate oxidation since persulfate was consumed to oxidize EDDS, resulting in persulfate inadequacy for naphthalene oxidation. Besides, 55 and 40% of naphthalene were removed by FeEDTA and FeEDDS alone, respectively. Particularly, 21 and 9% of naphthalene were degraded in the presence of FeEDTA and FeEDDS alone, respectively, which caused by electrons transfer among dissolved organic matter, Fe 2+ /Fe 3+ and naphthalene. Over 35, 36 and 45% of Cu, Pb and Zn were removed using FeEDTA/FeEDDS-activated persulfate. -- Highlights: ► FeEDTA/FeEDDS-activated persulfate oxidation removed PAH and heavy metal from soil. ► More naphthalene was removed by FeEDTA-activated persulfate compared to FeEDDS. ► Persulfate was consumed to oxidize EDDS in FeEDDS-activated persulfate oxidation. ► Metals can be extracted from soil by free EDTA/EDDS dissociated from FeEDTA/FeEDDS. ► Naphthalene oxidation can be induced by e − transfer among Fe 2+ , DOM and naphthalene. -- This study focuses on the potencies and mechanisms of naphthalene and metal removal from contaminated soil by FeEDTA/FeEDDS-activated persulfate

  1. Litter Controls Earthworm-Mediated Carbon and Nitrogen Transformations in Soil from Temperate Riparian Buffers

    Directory of Open Access Journals (Sweden)

    Maria Kernecker

    2014-01-01

    Full Text Available Nutrient cycling in riparian buffers is partly influenced by decomposition of crop, grass, and native tree species litter. Nonnative earthworms in riparian soils in southern Quebec are expected to speed the processes of litter decomposition and nitrogen (N mineralization, increasing carbon (C and N losses in gaseous forms or via leachate. A 5-month microcosm experiment evaluated the effect of Aporrectodea turgida on the decomposition of 3 litter types (deciduous leaves, reed canarygrass, and soybean stem residue. Earthworms increased CO2 and N2O losses from microcosms with soybean residue, by 112% and 670%, respectively, but reduced CO2 and N2O fluxes from microcosms with reed canarygrass by 120% and 220%, respectively. Litter type controlled the CO2 flux (soybean ≥ deciduous-mix litter = reed canarygrass > no litter and the N2O flux (soybean ≥ no litter ≥ reed canarygrass > deciduous-mix litter. However, in the presence of earthworms, there was a slight increase in C and N gaseous losses of C and N relative to their losses via leachate, across litter treatments. We conclude that litter type determines the earthworm-mediated decomposition effect, highlighting the importance of vegetation management in controlling C and N losses from riparian buffers to the environment.

  2. Sulfate-reducing bacteria in rice field soil and on rice roots.

    Science.gov (United States)

    Wind, T; Stubner, S; Conrad, R

    1999-05-01

    Rice plants that were grown in flooded rice soil microcosms were examined for their ability to exhibit sulfate reducing activity. Washed excised rice roots showed sulfate reduction potential when incubated in anaerobic medium indicating the presence of sulfate-reducing bacteria. Rice plants, that were incubated in a double-chamber (phylloshpere and rhizosphere separated), showed potential sulfate reduction rates in the anoxic rhizosphere compartment. These rates decreased when oxygen was allowed to penetrate through the aerenchyma system of the plants into the anoxic root compartment, indicating that sulfate reducers on the roots were partially inhibited by oxygen or that sulfate was regenerated by oxidation of reduced S-compounds. The potential activity of sulfate reducers on rice roots was consistent with MPN enumerations showing that H2-utilizing sulfate-reducing bacteria were present in high numbers on the rhizoplane (4.1 x 10(7) g-1 root fresh weight) and in the adjacent rhizosperic soil (2.5 x 10(7) g-1 soil dry weight). Acetate-oxidizing sulfate reducers, on the other hand, showed highest numbers in the unplanted bulk soil (1.9 x 10(6) g-1 soil dry weight). Two sulfate reducing bacteria were isolated from the highest dilutions of the MPN series and were characterized physiologically and phylogenetically. Strain F1-7b which was isolated from the rhizoplane with H2 as electron donor was related to subgroup II of the family Desulfovibrionaceae. Strain EZ-2C2, isolated from the rhizoplane on acetate, grouped together with Desulforhabdus sp. and Syntrophobacter wolinii. Other strains of sulfate-reducing bacteria originated from bulk soil of rice soil microcosms and were isolated using different electron donors. From these isolates, strains R-AcA1, R-IbutA1, R-PimA1 and R-AcetonA170 were Gram-positive bacteria which were affiliated with the genus Desulfotomaculum. The other isolates were members of subgroup II of the Desulfovibrionaceae (R-SucA1 and R-LacA1), were

  3. Impact of protists on a hydrocarbon-degrading bacterial community from deep-sea Gulf of Mexico sediments: A microcosm study

    Science.gov (United States)

    Beaudoin, David J.; Carmichael, Catherine A.; Nelson, Robert K.; Reddy, Christopher M.; Teske, Andreas P.; Edgcomb, Virginia P.

    2016-07-01

    In spite of significant advancements towards understanding the dynamics of petroleum hydrocarbon degrading microbial consortia, the impacts (direct or indirect via grazing activities) of bacterivorous protists remain largely unknown. Microcosm experiments were used to examine whether protistan grazing affects the petroleum hydrocarbon degradation capacity of a deep-sea sediment microbial community from an active Gulf of Mexico cold seep. Differences in n-alkane content between native sediment microcosms and those treated with inhibitors of eukaryotes were assessed by comprehensive two-dimensional gas chromatography following 30-90 day incubations and analysis of shifts in microbial community composition using small subunit ribosomal RNA gene clone libraries. More biodegradation was observed in microcosms supplemented with eukaryotic inhibitors. SSU rRNA gene clone libraries from oil-amended treatments revealed an increase in the number of proteobacterial clones (particularly γ-proteobacteria) after spiking sediments with diesel oil. Bacterial community composition shifted, and degradation rates increased, in treatments where protists were inhibited, suggesting protists affect the hydrocarbon degrading capacity of microbial communities in sediments collected at this Gulf of Mexico site.

  4. Microcosm. The world of the smallest particles; Mikrokosmos. Die Welt der kleinsten Teilchen

    Energy Technology Data Exchange (ETDEWEB)

    Fritzsch, Harald

    2012-07-01

    In order to understand, why all, what us surrounds, exists, -men, animals, plants, planets, the universe-, we must draw our eyes from the gigantic to the tiny. From the universe to the atom. From the macrocosm to the microcosm. There the physicists search for the formula, which can explain the structure of the world.

  5. Microbial diversity and structure are drivers of the biological barrier effect against Listeria monocytogenes in soil.

    Science.gov (United States)

    Vivant, Anne-Laure; Garmyn, Dominique; Maron, Pierre-Alain; Nowak, Virginie; Piveteau, Pascal

    2013-01-01

    Understanding the ecology of pathogenic organisms is important in order to monitor their transmission in the environment and the related health hazards. We investigated the relationship between soil microbial diversity and the barrier effect against Listeria monocytogenes invasion. By using a dilution-to-extinction approach, we analysed the consequence of eroding microbial diversity on L. monocytogenes population dynamics under standardised conditions of abiotic parameters and microbial abundance in soil microcosms. We demonstrated that highly diverse soil microbial communities act as a biological barrier against L. monocytogenes invasion and that phylogenetic composition of the community also has to be considered. This suggests that erosion of diversity may have damaging effects regarding circulation of pathogenic microorganisms in the environment.

  6. Effects of acute gamma-irradiation on the aquatic microbial microcosm in comparison with chemicals

    Energy Technology Data Exchange (ETDEWEB)

    Fuma, Shoichi, E-mail: fuma@nirs.go.j [Environmental Radiation Effects Research Group, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555 (Japan); Ishii, Nobuyoshi; Takeda, Hiroshi; Miyamoto, Kiriko; Yanagisawa, Kei [Environmental Radiation Effects Research Group, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555 (Japan); Doi, Kazutaka; Kawaguchi, Isao [Regulatory Sciences Research Group, National Institute of Radiological Sciences, 4-9-1 Anagawa, Inage-ku, Chiba 263-8555 (Japan); Tanaka, Nobuyuki [Environmental Chemistry Division, National Institute for Environmental Studies, 16-2 Onogawa, Tsukuba, Ibaraki 305-8506 (Japan); Inamori, Yuhei [Faculty of Symbiotic Systems Science, Fukushima University, 1 Kanayagawa, Fukushima 960-1296 (Japan); Polikarpov, Gennady G. [The A.O. Kovalevsky Institute of Biology of Southern Seas, Sevastopol 99011 (Ukraine)

    2009-12-15

    Effects of acute gamma-irradiation were investigated in the aquatic microcosm consisting of green algae (Chlorella sp. and Scenedesmus sp.) and a blue-green alga (Tolypothrix sp.) as producers; an oligochaete (Aeolosoma hemprichi), rotifers (Lecane sp. and Philodina sp.) and a ciliate protozoan (Cyclidium glaucoma) as consumers; and more than four species of bacteria as decomposers. At 100 Gy, populations were not affected in any taxa. At 500-5000 Gy, one or three taxa died out and populations of two or three taxa decreased over time, while that of Tolypothrix sp. increased. This Tolypothrix sp. increase was likely an indirect effect due to interspecies interactions. The principal response curve analysis revealed that the main trend of the effects was a dose-dependent population decrease. For a better understanding of radiation risks in aquatic microbial communities, effect doses of gamma-rays compared with copper, herbicides and detergents were evaluated using the radiochemoecological conceptual model and the effect index for microcosm.

  7. Effects of acute γ-irradiation on the aquatic microbial microcosm in comparison with chemicals

    International Nuclear Information System (INIS)

    Fuma, Shoichi; Ishii, Nobuyoshi; Takeda, Hiroshi; Miyamoto, Kiriko; Yanagisawa, Kei; Doi, Kazutaka; Kawaguchi, Isao; Tanaka, Nobuyuki; Inamori, Yuhei; Polikarpov, Gennady G.

    2009-01-01

    Effects of acute γ-irradiation were investigated in the aquatic microcosm consisting of green algae (Chlorella sp. and Scenedesmus sp.) and a blue-green alga (Tolypothrix sp.) as producers; an oligochaete (Aeolosoma hemprichi), rotifers (Lecane sp. and Philodina sp.) and a ciliate protozoan (Cyclidium glaucoma) as consumers; and more than four species of bacteria as decomposers. At 100 Gy, populations were not affected in any taxa. At 500-5000 Gy, one or three taxa died out and populations of two or three taxa decreased over time, while that of Tolypothrix sp. increased. This Tolypothrix sp. increase was likely an indirect effect due to interspecies interactions. The principal response curve analysis revealed that the main trend of the effects was a dose-dependent population decrease. For a better understanding of radiation risks in aquatic microbial communities, effect doses of γ-rays compared with copper, herbicides and detergents were evaluated using the radiochemoecological conceptual model and the effect index for microcosm.

  8. Artificial neural network applying for justification of tractors undercarriages parameters

    Directory of Open Access Journals (Sweden)

    V. A. Kuz’Min

    2017-01-01

    Full Text Available One of the most important properties that determine undercarriage layout on design stage is the soil compaction effect. Existing domestic standards of undercarriages impact to soil do not meet modern agricultural requirements completely. The authors justify the need for analysis of traction and transportation machines travel systems and recommendations for these parameters applied to machines that are on design or modernization stage. The database of crawler agricultural tractors particularly in such parameters as traction class and basic operational weight, engine power rating, average ground pressure, square of track basic branch surface area was modeled. Meanwhile the considered machines were divided into two groups by producing countries: Europe/North America and Russian Federation/CIS. The main graphical dependences for every group of machines are plotted, and the conforming analytical dependences within the ranges with greatest concentration of machines are generated. To make the procedure of obtaining parameters of the soil panning by tractors easier it is expedient to use the program tool - artificial neural network (or perceptron. It is necessary to apply to the solution of this task multilayered perceptron - neutron network of direct distribution of signals (without feedback. To carry out the analysis of parameters of running systems taking into account parameters of the soil panning by them and to recommend the choice of these parameters for newly created machines. The program code of artificial neural network is developed. On the basis of the created base of tractors the artificial neural network was created and tested. Accumulated error was not more than 5 percent. These data indicate the results accuracy and tool reliability. It is possible by operating initial design-data base and using the designed artificial neural network to define missing parameters.

  9. Bioindication with soil microfauna

    International Nuclear Information System (INIS)

    Aescht, E.; Foissner, W.

    1992-01-01

    The state of a soil can be characterised through its inhabitant micro-, meso-, and macrofauna. For an appropriate assessment of soil quality at least one representative of each of these size categories should be studied (e.g. testacea, mites, earthworms). This contribution summarizes the insights gained from microscopic soil fauna in this context. The following practical examples are discussed: pesticides, organic and artificial fertilisers, soil compaction, ecological and conventional farming, recolonisation. The 'weighted cenosis index' represents a quantitative measure for the influence of anthropogenic activity on a soil. (orig.) [de

  10. Exposure and effects of sediment-spiked fludioxonil on macroinvertebrates and zooplankton in outdoor aquatic microcosms

    NARCIS (Netherlands)

    Yin, Xiaohui; Brock, Theo C.M.; Barone, Lidia E.; Belgers, J.D.M.; Boerwinkel, Marie Claire; Buijse, Laura; Wijngaarden, van René P.A.; Hamer, Mick; Roessink, Ivo

    2018-01-01

    Information from effects of pesticides in sediments at an ecosystem level, to validate current and proposed risk assessment procedures, is scarce. A sediment-spiked outdoor freshwater microcosm experiment was conducted with fludioxonil (lipophilic, non-systemic fungicide) to study exposure

  11. Influence of drainage status on soil and water chemistry, litter decomposition and soil respiration in central Amazonian forests on sandy soils

    Directory of Open Access Journals (Sweden)

    Antônio Ocimar Manzi

    2011-04-01

    Full Text Available Central Amazonian rainforest landscape supports a mosaic of tall terra firme rainforest and ecotone campinarana, riparian and campina forests, reflecting topography-induced variations in soil, nutrient and drainage conditions. Spatial and temporal variations in litter decomposition, soil and groundwater chemistry and soil CO2 respiration were studied in forests on sandy soils, whereas drought sensitivity of poorly-drained valley soils was investigated in an artificial drainage experiment. Slightly changes in litter decomposition or water chemistry were observed as a consequence of artificial drainage. Riparian plots did experience higher litter decomposition rates than campina forest. In response to a permanent lowering of the groundwater level from 0.1 m to 0.3 m depth in the drainage plot, topsoil carbon and nitrogen contents decreased substantially. Soil CO2 respiration decreased from 3.7±0.6 µmol m-2 s-1 before drainage to 2.5±0.2 and 0.8±0.1 µmol m-2 s-1 eight and 11 months after drainage, respectively. Soil respiration in the control plot remained constant at 3.7±0.6 µmol m-2 s-1. The above suggests that more frequent droughts may affect topsoil carbon and nitrogen content and soil respiration rates in the riparian ecosystem, and may induce a transition to less diverse campinarana or short-statured campina forest that covers areas with strongly-leached sandy soil.

  12. [Calculation of soil water erosion modulus based on RUSLE and its assessment under support of artificial neural network].

    Science.gov (United States)

    Li, Yuhuan; Wang, Jing; Zhang, Jixian

    2006-06-01

    With Hengshan County of Shanxi Province in the North Loess Plateau as an example, and by using ETM + and remote sensing data and RUSLE module, this paper quantitatively derived the soil and water loss in loess hilly region based on "3S" technology, and assessed the derivation results under the support of artificial neural network. The results showed that the annual average erosion modulus of Hengshan County was 103.23 t x hm(-2), and the gross erosion loss per year was 4. 38 x 10(7) t. The erosion was increased from northwest to southeast, and varied significantly with topographic position. A slight erosion or no erosion happened in walled basin, flat-headed mountain ridges and sandy area, which always suffered from dropping erosion, while strip erosion often happened on the upslope of mountain ridge and mountaintop flat. Moderate rill erosion always occurred on the middle and down slope of mountain ridge and mountaintop flat, and weighty rushing erosion occurred on the steep ravine and brink. The RUSLE model and artificial neural network technique were feasible and could be propagandized for drainage areas control and preserved practice.

  13. Studies on the restoration succession of PFU microbial communities in a pilot-scale microcosm.

    Science.gov (United States)

    Jiang, Jian-Guo; Shen, Yun-Fen

    2007-06-01

    In order to imitate the restoration succession process of natural water ecosystem, a laboratory microcosm system of constant-flow-restoration was designed and established. A eutrophycation lake, Lake Donghu, was selected as the subject investigated. Six sampling stations were set on the lake, among which the water of station IV was natural clean water, and others were polluted with different degrees. Polyurethane foam unit microbial communities, which had colonized in the stations for a month, were collected from these stations and placed in their respective microcosms, using clean water of station IV to gradually replace the water of these microcosms. In this process, the healthy community in clean water continuously replaced the damaged communities in polluted water, the restoration succession of the damaged communities was characterized by weekly determination of several functional and structural community parameters, including species number (S), diversity index (DI), community pollution value (CPV), heterotrophy index (HI), and similarity coefficient. Cluster analysis based on similarity coefficient was used to compare the succession discrepancies of these microbial communities from different stations. The ecological succession of microbial communities during restoration was investigated by the variable patterns of these parameters, and based on which, the restoration standards of these polluted stations were suggested in an ecological sense. That was, while being restored, the water of station 0 (supereutrophycation) should be substituted with natural clean water by 95%; station I (eutrophycation), more than 90%; station II (eutrophycation), more than 85%; station III (eutrophycation), about 85%; station V (mesoeutrophycation), less than 50%. The effects of the structural and functional parameters in monitoring and assessing ecological restoration are analyzed and compared.

  14. Experimental probe into adsorption of Sr, Cs in the Soil

    International Nuclear Information System (INIS)

    Yuan Guangyu; Bai Qingzhong

    1987-12-01

    There are some obstacles in researching on the adsorption patterns of Sr and Cs in soil. One of them is that it is difficult to compare and to consult between various results and data for different types and sizes of soil. For this reason, it is neccesary to do further research into adsorption patterns of Sr and Cs in single particles of soil. By using scanning electromicroscope, the microcosmic phenomena of nuclides adsorption is observed, and a possible mechanism is proposed. A certain amount of diluvial soil from Shanxi Province and a certain amount of alluvial soil from western Beijing suburban were chosen as detected samples. After determining the distributions of adsorbed Sr and Cs in varied mineral particles, it is pointed out that the defference of chemical components of various size soils effects Kd value of Sr and Cs obviously. The method for calculating Kd value of mixing samples according to the particle distribution coefficients are derived under the condition of surface adsorption as main. The authors expound that it is favourable for accuracy to select and control the particle sizes in static adsorptional experiment

  15. Evaluation of burial ground soil covers

    International Nuclear Information System (INIS)

    Fenimore, J.W.

    1976-11-01

    Solid radioactive waste burial at the Savannah River Plant between 1955 and 1972 filled a 76-acre site. Burial operations then were shifted to an adjacent site, and a program was begun to develop a land cover that would: (1) minimize soil erosion; and (2) protect the buried waste from deep-rooted plants, since radionuclides can be recycled by uptake through root systems. In anticipation of the need for a suitable soil cover, five grass species were planted on 20 plots (4 plots of each species) at the burial ground (Facility 643-G) in 1969. The grass plots were planted for evaluation of viability, root depth, and erosion protection existing under conditions of low fertility and minimum care. In addition, 16 different artificial soil covers were installed on 32 plots (each cover on two plots) to evaluate: (1) resistance of cover to deterioration from weathering; (2) resistance of cover to encroachment by deep-rooted plants; and (3) soil erosion protection provided by the cover. All test plots were observed and photographed in 1970 and in 1974. After both grass and artificial soil covers were tested five years, the following results were observed: Pensacola Bahia grass was the best of the five cover grasses tested; and fifteen of the sixteen artificial covers that were tested controlled vegetation growth and soil erosion. Photographs of the test plots will be retaken at five-year intervals for future documentation

  16. Litter Controls Earthworm-Mediated Carbon and Nitrogen Transformations in Soil from Temperate Riparian Buffers

    OpenAIRE

    Maria Kernecker; Joann K. Whalen; Robert L. Bradley

    2014-01-01

    Nutrient cycling in riparian buffers is partly influenced by decomposition of crop, grass, and native tree species litter. Nonnative earthworms in riparian soils in southern Quebec are expected to speed the processes of litter decomposition and nitrogen (N) mineralization, increasing carbon (C) and N losses in gaseous forms or via leachate. A 5-month microcosm experiment evaluated the effect of Aporrectodea turgida on the decomposition of 3 litter types (deciduous leaves, reed canarygrass, an...

  17. Cesium-137 and natural radionuclides in soils from southern Brazil and soils and others environmental samples from Antarctic

    International Nuclear Information System (INIS)

    Schuch, L.A.

    1993-04-01

    This work presents a study of environmental artificial and natural radioactivity levels in soil samples from the Southern Brazil and in soils and other environmental samples form Antarctica. Artificial radioactivity was determined by measuring Cs-137 which is a 30.1 year half-life man-made radionuclide produced in the past by atmospheric tests of nuclear weapons. Natural radioactivity was determined by measuring some radionuclides belonging to Th-232 and U-238 natural radioactive families, and of K-40 concentrations. Several types of soils from Southern Brazil; and soil samples, marine sediments, lichens, mosses and algae collected at King George and other nearby islands (South Shetland Archipelago, Antarctica) were analyzed. A gamma-ray spectrometer was used to measure radioactivity levels of the collected samples and its overall characteristics are analyzed in this work. (author)

  18. Ecological effects of Spring and late Summer applications of Lambda-Cyhalothrin on freshwater microcosms

    NARCIS (Netherlands)

    Wijngaarden, van R.P.A.; Brock, T.C.M.; Brink, van den P.J.; Gylstra, R.; Maund, S.J.

    2006-01-01

    The aim of the study was to compare the effects of the pyrethroid insecticide lambda-cyhalothrin (treated at 10, 25, 50, 100, 250 ng active ingredient a.i./L) on a drainage ditch ecosystem in spring and late summer. Microcosms (water volume approximately 430 L) were established using enclosures in a

  19. Changes in gene expression during adaptation of Listeria monocytogenes to the soil environment.

    Science.gov (United States)

    Piveteau, Pascal; Depret, Géraldine; Pivato, Barbara; Garmyn, Dominique; Hartmann, Alain

    2011-01-01

    Listeria monocytogenes is a ubiquitous opportunistic pathogen responsible for listeriosis. In order to study the processes underlying its ability to adapt to the soil environment, whole-genome arrays were used to analyse transcriptome modifications 15 minutes, 30 minutes and 18 h after inoculation of L. monocytogenes EGD-e in soil extracts. Growth was observed within the first day of incubation and large numbers were still detected in soil extract and soil microcosms one year after the start of the experiment. Major transcriptional reprofiling was observed. Nutrient acquisition mechanisms (phosphoenolpyruvate-dependent phosphotransferase systems and ABC transporters) and enzymes involved in catabolism of specific carbohydrates (β-glucosidases; chitinases) were prevalent. This is consistent with the overrepresentation of the CodY regulon that suggests that in a nutrient depleted environment, L. monocytogenes recruits its extensive repertoire of transporters to acquire a range of substrates for energy production.

  20. Distribution of artificial sweeteners in dust and soil in China and their seasonal variations in the environment of Tianjin.

    Science.gov (United States)

    Gan, Zhiwei; Sun, Hongwen; Yao, Yiming; Zhao, Yangyang; Li, Yan; Zhang, Yanwei; Hu, Hongwei; Wang, Ruonan

    2014-08-01

    A nationwide investigation on the occurrence of artificial sweeteners (ASs) was conducted by collecting 98 paired outdoor dust and soil samples from mainland China. The ASs were widely detected in Chinese atmospheric dry deposition and soil samples, at concentrations up to 6450 and 1280 ng/g, respectively. To give a picture on AS distribution and source in the whole environment, the concentrations and seasonal variations of ASs in Tianjin were studied, including atmosphere, soil, and water samples. The AS levels were significantly higher in Haihe river at TJW (a sampling site in central city) in winter, while no obviously seasonal trends were obtained at BYL (close to a AS factory) and the site at a wastewater treatment plant. Saccharin, cyclamate, and acesulfame were the dominant ASs in both gas and particulate phase, with concentrations varying from 0.02 to 1940 pg/m(3). Generally, gas phase concentrations of the ASs were relatively higher in summer, while opposite results were acquired for particulate phase. Wet and dry deposition fluxes were calculated based on the measured AS levels. The results indicated that both wet and dry deposition could efficiently remove ASs in the atmosphere and act as important pollutant sources for the ASs in surface environment. Copyright © 2014 Elsevier B.V. All rights reserved.

  1. Temporal succession of soil antibiotic resistance genes following application of swine, cattle and poultry manures spiked with or without antibiotics

    International Nuclear Information System (INIS)

    Zhang, Yu-Jing; Hu, Hang-Wei; Gou, Min; Wang, Jun-Tao; Chen, Deli; He, Ji-Zheng

    2017-01-01

    Land application of animal manure is a common agricultural practice potentially leading to dispersal and propagation of antibiotic resistance genes (ARGs) in environmental settings. However, the fate of resistome in agro-ecosystems over time following application of different manure sources has never been compared systematically. Here, soil microcosm incubation was conducted to compare effects of poultry, cattle and swine manures spiked with or without the antibiotic tylosin on the temporal changes of soil ARGs. The high-throughput quantitative PCR detected a total of 185 unique ARGs, with Macrolide-Lincosamide-Streptogramin B resistance as the most frequently encountered ARG type. The diversity and abundance of ARGs significantly increased following application of manure and manure spiked with tylosin, with more pronounced effects observed in the swine and poultry manure treatments than in the cattle manure treatment. The level of antibiotic resistance gradually decreased over time in all manured soils but was still significantly higher in the soils treated with swine and poultry manures than in the untreated soils after 130 days’ incubation. Tylosin-amended soils consistently showed higher abundances of ARGs than soils treated with manure only, suggesting a strong selection pressure of antibiotic-spiked manure on soil ARGs. The relative abundance of ARGs had significantly positive correlations with integrase and transposase genes, indicative of horizontal transfer potential of ARGs in manure and tylosin treated soils. Our findings provide evidence that application of swine and poultry manures might enrich more soil ARGs than cattle manure, which necessitates the appropriate treatment of raw animal manures prior to land application to minimise the spread of environmental ARGs. - Highlights: • Application of poultry, swine, and cattle manure with or without tylosin increased the level of soil ARGs. • Poultry and swine manures had stronger selection pressure

  2. A short-term study on the interaction of bacteria, fungi and endosulfan in soil microcosm.

    Science.gov (United States)

    Xie, Huijun; Gao, Fuwei; Tan, Wei; Wang, Shu-Guang

    2011-12-15

    Endosulfan is one of the few organic chlorine insecticides still in use today in many developing countries. It has medium toxicity for fish and aquatic invertebrates. In this study, we added different concentrations of endosulfan to a series of soil samples collected from Baihua Park in Jinan, Shandong Province, China. Interactions of exogenous endosulfan, bacteria and fungi were analyzed by monitoring the changes in microbe-specific phospholipid fatty acids (PLFA), residual endosulfan and its metabolites which include; endosulfan sulfate, endosulfan lactone and endosulfan diol during a 9 days incubation period. Our results showed that endosulfan reduced fungi biomass by 47% on average after 9 days, while bacteria biomass increased 76% on average. In addition, we found that endosulfan degraded 8.62% in natural soil (NE), 5.51% in strepolin soil (SSE) and 2.47% in sterile soil (SE). Further analysis of the endosulfan metabolites in NE and SSE, revealed that the amount of endosulfan sulfate (ES) significantly increased and that of endosulfan lactone (EL) slightly decreased in both samples after 9 days. However, that of endosulfan diol (ED) increased in NE and decreased in SSE. After collective analysis our data demonstrated that fungi and bacteria responded differently to exogeous endosulfan, in a way that could promote the formation of endosulfan diol during endosulfan degradation. Copyright © 2011 Elsevier B.V. All rights reserved.

  3. Artificial soils from alluvial tin mining wastes in Malaysia--a study of soil chemistry following experimental treatments and the impact of mycorrhizal treatment on growth and foliar chemistry.

    Science.gov (United States)

    Tompkins, David S; Bakar, Baki B; Hill, Steve J

    2012-01-01

    For decades Malaysia was the world's largest producer of Sn, but now the vast open cast mining operations have left a legacy of some 100,000 ha of what is effectively wasteland, covered with a mosaic of tailings and lagoons. Few plants naturally recolonise these areas. The demand for such land for both urban expansion and agricultural use has presented an urgent need for better characterisation. This study reports on the formation of artificial soils from alluvial Sn mining waste with a focus on the effects of experimental treatments on soil chemistry. Soil organic matter, clay, and pH were manipulated in a controlled environment. Adding both clay tailings and peat enhanced the cation exchange capacity of sand tailings but also reduced the pH. The addition of peat reduced the extractable levels of some elements but increased the availability of Ca and Mg, thus proving beneficial. The use of clay tailings increased the levels of macro and micronutrients but also released Al, As, La, Pb and U. Additionally, the effects of soil mix and mycorrhizal treatments on growth and foliar chemistry were studied. Two plant species were selected: Panicum milicaeum and Pueraria phaseoloides. Different growth patterns were observed with respect to the additions of peat and clay. The results for mycorrhizal treatment (live inoculum or sterile carrier medium) are more complex, but both resulted in improved growth. The use of mycorrhizal fungi could greatly enhance rehabilitation efforts on sand tailings.

  4. Glyceria maxima as new test species for the EU risk assessment for herbicides: a microcosm study.

    Science.gov (United States)

    Mohr, S; Schott, J; Hoenemann, L; Feibicke, M

    2015-03-01

    In its recent guidance document on tiered risk assessment for plant protection products for aquatic organisms, the European Food Safety Authority (EFSA) proposed to use Glyceria maxima as monocotyledonous grass species for the testing of special herbicide groups. However, published toxicity data for this species is very limited and there is no test guideline for Glyceria sp. For this reason a microcosm study was conducted in order to gain experience on the degree of sensitivity of G. maxima to the herbicidal substances clodinafop-propargyl (grass herbicide) and fluroxypyr (auxin) in comparison to the already established test organism water milfoil Myriophyllum spicatum and the duckweed species Landoltia punctata. Five concentrations without replicates were tested for each test substance using 10 microcosms and three microcosms served as controls. The experiment was run for 8 weeks. Morphological endpoints were used to determine growth and EC50 values. The results show that M. spicatum was most sensitive to fluroxypyr (37 days EC50 for roots: 62 µg/L) and G. maxima most sensitive to clodinafop-propargyl (22 days EC50 for total shoot length: 48 µg/L) whereas the duckweed species was considerable less sensitive. Hence, G. maxima turns out to be a good candidate for testing grass specific herbicides, supporting its inclusion as an additional macrophyte test for the risk assessment of herbicides as proposed by the EFSA.

  5. How do peat type, sand addition and soil moisture influence the soil organic matter mineralization in anthropogenically disturbed organic soils?

    Science.gov (United States)

    Säurich, Annelie; Tiemeyer, Bärbel; Don, Axel; Burkart, Stefan

    2017-04-01

    in a microcosm system under a constant temperature of 10°C. The water-saturated soil columns will be drained via suction plates at the bottom of the columns by stepwise increase of the suction. The head space of the soil columns will be permanently flushed with moistened synthetic air and CO2 concentrations will be measured via online gas chromatography. First results will be presented.

  6. Effects of artificial defoliation of pines on the structure and physiology of the soil fungal community of a mixed pine-spruce forest

    Science.gov (United States)

    Cullings, Ken; Raleigh, Christopher; New, Michael H.; Henson, Joan

    2005-01-01

    Loss of photosynthetic area can affect soil microbial communities by altering the availability of fixed carbon. We used denaturing gradient gel electrophoresis (DGGE) and Biolog filamentous-fungus plates to determine the effects of artificial defoliation of pines in a mixed pine-spruce forest on the composition of the fungal community in a forest soil. As measured by DGGE, two fungal species were affected significantly by the defoliation of pines (P the frequency of members of the ectomycorrhizal fungus genus Cenococcum decreased significantly, while the frequency of organisms of an unidentified soil fungus increased. The decrease in the amount of Cenococcum organisms may have occurred because of the formation of extensive hyphal networks by species of this genus, which require more of the carbon fixed by their host, or because this fungus is dependent upon quantitative differences in spruce root exudates. The defoliation of pines did not affect the overall composition of the soil fungal community or fungal-species richness (number of species per core). Biolog filamentous-fungus plate assays indicated a significant increase (P the number of carbon substrates utilized by the soil fungi and the rate at which these substrates were used, which could indicate an increase in fungal-species richness. Thus, either small changes in the soil fungal community give rise to significant increases in physiological capabilities or PCR bias limits the reliability of the DGGE results. These data indicate that combined genetic and physiological assessments of the soil fungal community are needed to accurately assess the effect of disturbance on indigenous microbial systems.

  7. Application of of artificial neural networks for estimation of soil-plant transfer factor for "1"3"7Cs

    International Nuclear Information System (INIS)

    Santos, Anna Karla Gomes dos

    2016-01-01

    The knowledge of radionuclide behavior in soils is fundamental to calculate the dose due to food ingestion and to evaluate the risks of radioactive exposure of the population. This knowledge associated to the socio-economic characteristics of the affected region will set the radio protective measures to be taken in case of radioactive contamination of rural areas. The soil-plant transfer factor (TF) is the specific parameter value of radiological models to numerically integrate the dynamic processes that occur within the radionuclides in the soil plant system. This measurement, specific to each radionuclide and soil type, is defined ratio between a specific radionuclide activity in the edible part of the plant and its soil activity. However, the absence of linearity between soil concentrations and the measurements in plants indicate the complexity of the transfer process of radionuclide from soil to a plant, making it difficult to forecast the TF ratio in a specific scenario. One of the main radionuclides associated to nuclear accidents impacting rural areas is "1"3"7Cs. This is one of the most worrisome radionuclides because of its physiochemical properties and its chemical similarity with potassium (K) and its extended physical mid-life (t1/2 = 30,17 years) that allows great environmental dispersion, ecological mobility and environmental endurance. Radiological studies related to "1"3"7Cs transfer factor show that pedological parameters that considerably explain the behavior of "1"3"7Cs in soil-plant system are: exchangeable K, clayed minerals, organic matter content and pH in soils. In this work, the computational method of artificial neural network (ANN) was applied to evaluate the possibility to forecast the TF of "1"3"7Cs in cereals, associated to pedological parameters considered potential indicators of its phyto availability: cationic exchange capacity (CEC), exchangeable K and pH. This study demonstrated that the ANN, having only as entry data the

  8. Copper Pollution Increases the Resistance of Soil Archaeal Community to Changes in Water Regime.

    Science.gov (United States)

    Li, Jing; Liu, Yu-Rong; Cui, Li-Juan; Hu, Hang-Wei; Wang, Jun-Tao; He, Ji-Zheng

    2017-11-01

    Increasing efforts have been devoted to exploring the impact of environmental stresses on soil bacterial communities, but the work on the archaeal community is seldom. Here, we constructed microcosm experiments to investigate the responses of archaeal communities to the subsequent dry-rewetting (DW) disturbance in two contrasting soils (fluvo-aquic and red soil) after 6 years of copper pollution. Ten DW cycles were exerted on the two soils with different copper levels, followed by a 6-week recovery period. In both soils, archaeal diversity (Shannon index) in the high copper-level treatments increased over the incubation period, and archaeal community structure changed remarkably as revealed by the non-metric multidimensional scaling ordinations. In both soils, copper pollution altered the response of dominant operational taxonomic units (OTUs) to the DW disturbance. Throughout the incubation and recovery period, the resistance of archaeal abundance to the DW disturbance was higher in the copper-polluted soils than soils without pollution. Taken together, copper pollution altered the response of soil archaeal diversity and community composition to the DW disturbance and increased the resistance of the archaeal abundance. These findings have important implications for understanding soil microbial responses to ongoing environmental change.

  9. Bacterial quorum sensing and nitrogen cycling in rhizosphere soil

    Energy Technology Data Exchange (ETDEWEB)

    DeAngelis, K.M.; Lindow, S.E.; Firestone, M.K.

    2008-10-01

    Plant photosynthate fuels carbon-limited microbial growth and activity, resulting in increased rhizosphere nitrogen (N)-mineralization. Most soil organic N is macromolecular (chitin, protein, nucleotides); enzymatic depolymerization is likely rate-limiting for plant N accumulation. Analyzing Avena (wild oat) planted in microcosms containing sieved field soil, we observed increased rhizosphere chitinase and protease specific activities, bacterial cell densities, and dissolved organic nitrogen (DON) compared to bulk soil. Low-molecular weight DON (<3000 Da) was undetectable in bulk soil but comprised 15% of rhizosphere DON. Extracellular enzyme production in many bacteria requires quorum sensing (QS), cell-density dependent group behavior. Because proteobacteria are considered major rhizosphere colonizers, we assayed the proteobacterial QS signals acyl-homoserine lactones (AHLs), which were significantly increased in the rhizosphere. To investigate the linkage between soil signaling and N cycling, we characterized 533 bacterial isolates from Avena rhizosphere: 24% had chitinase or protease activity and AHL production; disruption of QS in 7 of 8 eight isolates disrupted enzyme activity. Many {alpha}-Proteobacteria were newly found with QS-controlled extracellular enzyme activity. Enhanced specific activities of N-cycling enzymes accompanied by bacterial density-dependent behaviors in rhizosphere soil gives rise to the hypothesis that QS could be a control point in the complex process of rhizosphere N-mineralization.

  10. Inhibition effect of zinc in wastewater on the N2O emission from coastal loam soils.

    Science.gov (United States)

    Huang, Yan; Ou, Danyun; Chen, Shunyang; Chen, Bin; Liu, Wenhua; Bai, Renao; Chen, Guangcheng

    2017-03-15

    The effects of zinc (Zn) on nitrous oxide (N 2 O) fluxes from coastal loam soil and the abundances of soil nitrifier and denitrifier were studied in a tidal microcosm receiving livestock wastewater with different Zn levels. Soil N 2 O emission significantly increased due to discharge of wastewater rich in ammonia (NH 4 + -N) while the continuous measurements of gas flux showed a durative reduction in N 2 O flux by high Zn input (40mgL -1 ) during the low tide period. Soil inorganic nitrogen concentrations increased at the end of the experiment and even more soil NH 4 + -N was measured in the high-Zn-level treatment, indicating an inhibition of ammonia oxidation by Zn input. Quantitative PCR of soil amoA, narG and nirK genes encoding ammonia monooxygenase, nitrate reductase and nitrite reductase, respectively, showed that the microbial abundances involved in these metabolisms were neither affected by wastewater discharge nor Zn contamination. Copyright © 2017 Elsevier Ltd. All rights reserved.

  11. Effect of zinc-enriched natural sediments, in isolated and microcosm models, on three species of benthic invertebrates

    International Nuclear Information System (INIS)

    Galar Martinez, Marcela; Martinez-Tabche, Laura; Sanchez-Hidalgo, Eugenia; Lopez Lopez, Eugenia

    2006-01-01

    Availability of toxic in aquatic bodies is limited by the physicochemical characteristics of sediments and water, as well as by the interactions between the different xenobiotics and inhabits species. The aim of this work was to relate the effect produced by zinc (Zn) spiked in sediments of the Ignacio Ramirez dam (PIR), in isolated and microcosm models, on ATP concentration of three benthic organisms with the metal biodisponibility. The selected species were a crustacean, an annelid and a mollusk: Hyalella azteca (Amphipoda: Hyalellidae), Limnodrilus hoffmeisteri (Oligochaeta: Tubificidae) and Stagnicola attenuata (Basommatophora: Lymnaeidae), species that are found at high proportions in the reservoir and use different spaces in the benthos. Samples of sediments and organisms were collected from the PIR during the dry season (February of 1999). Metal concentration (Zn, Fe, Cu and Ni), pH, texture, particle size, total nitrogen and organic matter were determined in sediments. Sublethal studies were carried out using two types of static systems (isolated and in microcosm organisms). Both models contained PIR sediments enriched with Zn (nominal concentration of 0.8129 mg/kg) and synthetic water in a proportion of 1:4. The test organisms were added to the systems once the equilibrium was reached (2 hr) considering the biomass quantity with respect to volume (1.0 g of organism by each 100 ml of water:sediment). After 0, 12, 24, 36, 48 and 72 hr of exposure, samples of sediment and hydrobionts were taken, and Zn content was quantified by atomic absorption. ATP concentration was also determined in organisms. The effect produced by natural sediments spiked with Zn is increased by the presence of more than one specie in the system (microcosm). With respect to Zn levels, two of the organisms (L. hoffmeisteri y S. attenuata) tend to lose this metal in isolated and microcosm models, probably as a regulation strategy in its accumulation, as well as Fe presence in the

  12. [Three-dimension temporal and spatial dynamics of soil water for the artificial vegetation in the center of Taklimakan desert under saline water drip-irrigation].

    Science.gov (United States)

    Ding, Xin-yuan; Zhou, Zhi-bin; Xu, Xin-wen; Lei, Jia-qiang; Lu, Jing-jing; Ma, Xue-xi; Feng, Xiao

    2015-09-01

    Three-dimension temporal and spatial dynamics of the soil water characteristics during four irrigating cycles of months from April to July for the artificial vegetation in the center of Taklimakan Desert under saline water drip-irrigation had been analyzed by timely measuring the soil water content in horizontal and vertical distances 60 cm and 120 cm away from the irrigating drips, respectively. Periodic spatial and temporal variations of soil water content were observed. When the precipitation effect was not considered, there were no significant differences in the characteristics of soil water among the irrigation intervals in different months, while discrepancies were obvious in the temporal and spatial changes of soil moisture content under the conditions of rainfall and non-rainfall. When it referred to the temporal changes of soil water, it was a little higher in April but a bit lower in July, and the soil water content in June was the highest among four months because some remarkable events of precipitation happened in this month. However, as a whole, the content of soil moisture was reduced as months (from April to July) went on and it took a decreasing tendency along with days (1-15 d) following a power function. Meanwhile, the characteristics of soil water content displayed three changeable stages in an irrigation interval. When it referred to the spatial distributions of soil water, the average content of soil moisture was reduced along with the horizontal distance following a linear regression function, and varied with double peaks along with the vertical distance. In addition, the spatial distribution characteristics of the soil water were not influenced by the factors of precipitation and irrigating time but the physical properties of soil.

  13. Degradation of 1,1,2,2-tetrachloroethane and accumulation of vinyl chloride in wetland sediment microcosms and in situ porewater: biogeochemical controls and associations with microbial communities

    Science.gov (United States)

    Lorah, Michelle M.; Voytek, Mary A.

    2004-05-01

    The biodegradation pathways of 1,1,2,2-tetrachloroethane (TeCA) and 1,1,2-trichloroethane (112TCA) and the associated microbial communities in anaerobic wetland sediments were evaluated using concurrent geochemical and genetic analyses over time in laboratory microcosm experiments. Experimental results were compared to in situ porewater data in the wetland to better understand the factors controlling daughter product distributions in a chlorinated solvent plume discharging to a freshwater tidal wetland at Aberdeen Proving Ground, Maryland. Microcosms constructed with wetland sediment from two sites showed little difference in the initial degradation steps of TeCA, which included simultaneous hydrogenolysis to 112TCA and dichloroelimination to 1,2-dichloroethene (12DCE). The microcosms from the two sites showed a substantial difference, however, in the relative dominance of subsequent dichloroelimination of 112TCA. A greater dominance of 112TCA dichloroelimination in microcosms constructed with sediment that was initially iron-reducing and subsequently simultaneously iron-reducing and methanogenic caused approximately twice as much vinyl chloride (VC) production as microcosms constructed with sediment that was methanogenic only throughout the incubation. The microcosms with higher VC production also showed substantially more rapid VC degradation. Field measurements of redox-sensitive constituents, TeCA, and its anaerobic degradation products along flowpaths in the wetland porewater also showed greater production and degradation of VC with concurrent methanogenesis and iron reduction. Molecular fingerprinting indicated that bacterial species [represented by a peak at a fragment size of 198 base pairs (bp) by MnlI digest] are associated with VC production from 112TCA dichloroelimination, whereas methanogens (190 and 307 bp) from the Methanococcales or Methanobacteriales family are associated with VC production from 12DCE hydrogenolysis. Acetate-utilizing methanogens

  14. Effect of leaf litter quantity and type on forest soil fauna and biological quality

    OpenAIRE

    Zhizhong Yuan; Yang Cui; Shaokui Yan

    2013-01-01

    It is important to assess forest litter management. Here we examined the effects of leaf litter addition on the soil faunal community in Huitong subtropical forest region in Hunan Province, China. The microcosm experiment involving leaf-litter manipulation using a block and nested experimental design, respectively, was established in May, 2011. In the block design, the effects of litter quantity and its control were examined, while in the nested design a comparison was made of litter quality ...

  15. Worldwide Open Proficiency Test: Determination of Natural and Artificial Radionuclides in Moss-Soil and Water IAEA-CU-2009-03

    International Nuclear Information System (INIS)

    2012-01-01

    Reliable determination of natural and artificial radionuclides in environmental samples is necessary to comply with radiation protection and environmental regulations. The IAEA assists Member State laboratories in maintaining and improving their readiness by producing reference materials, by developing standardized analytical methods, and by conducting interlaboratory comparisons and proficiency tests as tools for quality control. To fulfil this obligation and ensure a reliable, worldwide, rapid and consistent response, the IAEA Terrestrial Environment Laboratory in Seibersdorf, Austria, organizes interlaboratory comparisons and proficiency tests. This summary report presents the results of the worldwide proficiency test IAEA-CU-2009- 03 on the determination of natural and artificial radionuclides in moss-soil and spiked water. The methodologies, data evaluation approach, summary evaluation of each nuclide and individual evaluation reports for each laboratory are also described. This proficiency test was designed to identify analytical problems, to support Member State laboratories to improve the quality of their analytical results and maintain their accreditation, and to provide a regular forum for discussion and technology transfer in this area. The number of samples, their matrix interferences and the concentration levels of the analytes were designed in a way that enables identification of potential analytical problems.

  16. Tenax extraction for exploring rate-limiting factors in methyl-β-cyclodextrin enhanced anaerobic biodegradation of PAHs under denitrifying conditions in a red paddy soil

    Energy Technology Data Exchange (ETDEWEB)

    Sun, Mingming, E-mail: sunmingming@njau.edu.cn [Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095 (China); Key Laboratory of Soil Environmental and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008 (China); Ye, Mao [State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008 (China); Hu, Feng, E-mail: fenghu@njau.edu.cn [Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095 (China); Li, Huixin [Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095 (China); Teng, Ying [State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008 (China); Luo, Yongming [Yantai Institute of Costal Zone Research, Chinese Academy of Sciences, Yantai 264003 (China); Jiang, Xin [State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008 (China); Kengara, Fredrick Orori [Department of Chemistry, Maseno University, Private Bag, Maseno 40105 (Kenya)

    2014-01-15

    Highlights: • Enhanced anaerobic bioremediation of a red paddy soil polluted with PAHs. • 1% (w/w) methyl-β-cyclodextrin (MCD) and 20 mM nitrate addition acted as solubility-enhancing agent and electron acceptor respectively. • Tenax extraction and a first-three-compartment modeling were applicable to explore the rate-limiting factors in the biodegradation. • Lack of PAH-degraders hindered biodegradation in control and MCD addition treatments. • Inadequate bioaccessible PAHs was vital rate-limiting factor in nitrate addition treatments. -- Abstract: The effectiveness of anaerobic bioremediation systems for PAH-contaminated soil may be constrained by low contaminants bioaccessibility due to limited aqueous solubility and lack of suitable electron acceptors. Information on what is the rate-limiting factor in bioremediation process is of vital importance in the decision in what measures can be taken to assist the biodegradation efficacy. In the present study, four different microcosms were set to study the effect of methyl-β-cyclodextrin (MCD) and nitrate addition (N) on PAHs biodegradation under anaerobic conditions in a red paddy soil. Meanwhile, sequential Tenax extraction combined with a first-three-compartment model was employed to evaluate the rate-limiting factors in MCD enhanced anaerobic biodegradation of PAHs. Microcosms with both 1% (w/w) MCD and 20 mM N addition produced maximum biodegradation of total PAHs of up to 61.7%. It appears rate-limiting factors vary with microcosms: low activity of degrading microorganisms is the vital rate-limiting factor for control and MCD addition treatments (CK and M treatments); and lack of bioaccessible PAHs is the main rate-limiting factor for nitrate addition treatments (N and MN treatments). These results have practical implications for site risk assessment and cleanup strategies.

  17. Tenax extraction for exploring rate-limiting factors in methyl-β-cyclodextrin enhanced anaerobic biodegradation of PAHs under denitrifying conditions in a red paddy soil

    International Nuclear Information System (INIS)

    Sun, Mingming; Ye, Mao; Hu, Feng; Li, Huixin; Teng, Ying; Luo, Yongming; Jiang, Xin; Kengara, Fredrick Orori

    2014-01-01

    Highlights: • Enhanced anaerobic bioremediation of a red paddy soil polluted with PAHs. • 1% (w/w) methyl-β-cyclodextrin (MCD) and 20 mM nitrate addition acted as solubility-enhancing agent and electron acceptor respectively. • Tenax extraction and a first-three-compartment modeling were applicable to explore the rate-limiting factors in the biodegradation. • Lack of PAH-degraders hindered biodegradation in control and MCD addition treatments. • Inadequate bioaccessible PAHs was vital rate-limiting factor in nitrate addition treatments. -- Abstract: The effectiveness of anaerobic bioremediation systems for PAH-contaminated soil may be constrained by low contaminants bioaccessibility due to limited aqueous solubility and lack of suitable electron acceptors. Information on what is the rate-limiting factor in bioremediation process is of vital importance in the decision in what measures can be taken to assist the biodegradation efficacy. In the present study, four different microcosms were set to study the effect of methyl-β-cyclodextrin (MCD) and nitrate addition (N) on PAHs biodegradation under anaerobic conditions in a red paddy soil. Meanwhile, sequential Tenax extraction combined with a first-three-compartment model was employed to evaluate the rate-limiting factors in MCD enhanced anaerobic biodegradation of PAHs. Microcosms with both 1% (w/w) MCD and 20 mM N addition produced maximum biodegradation of total PAHs of up to 61.7%. It appears rate-limiting factors vary with microcosms: low activity of degrading microorganisms is the vital rate-limiting factor for control and MCD addition treatments (CK and M treatments); and lack of bioaccessible PAHs is the main rate-limiting factor for nitrate addition treatments (N and MN treatments). These results have practical implications for site risk assessment and cleanup strategies

  18. Effects of mercury contamination on the culturable heterotrophic, functional and genetic diversity of the bacterial community in soil

    DEFF Research Database (Denmark)

    Rasmussen, Lasse Dam; Sørensen, S. J.

    2001-01-01

    This study investigates the effect of mercury contamination on the culturable heterotrophic, functional and genetic diversity of the bacterial community in soil. The changes in diversity were monitored in soil microcosms, enriched with 25 mug Hg(II) g(-1) soil, over a period of 3 months...... by purification of total soil DNA and amplification of bacterial 16S rDNA fragments by polymerase chain reaction. Concentrations of bioavailable and total mercury were measured throughout the experiment. The effect on the culturable heterotrophic and genetic diversity was very similar, showing an immediate...... decrease after mercury addition but then slowly increasing throughout the entire experimental period. Pre-exposure levels were not reached within the time span of this investigation. The DGGE band pattern indicated that a shift in the community structure was responsible for recovered diversity. When...

  19. Impact of chemical leaching on permeability and cadmium removal from fine-grained soils.

    Science.gov (United States)

    Lin, Zhongbing; Zhang, Renduo; Huang, Shuang; Wang, Kang

    2017-08-01

    The aim of this study was to investigate the influence of chemical leaching on permeability and Cd removal from fine-grained polluted soils. Column leaching experiments were conducted using two types of soils (i.e., artificially Cd-polluted loam and historically polluted silty loam). Chemical agents of CaCl 2 , FeCl 3 , citric acid, EDTA, rhamnolipid, and deionized water were used to leach Cd from the soils. Results showed that organic agents reduced permeability of both soils, and FeCl 3 reduced permeability of loam soil, compared with inorganic agents and deionized water. Entrapment and deposition of colloids generated from the organic agents and FeCl 3 treatments reduced the soil permeability. The peak Cd effluence from the artificially polluted loam columns was retarded. For the artificially polluted soils treated with EDTA and the historically polluted soils with FeCl 3 , Cd precipitates were observed at the bottom after chemical leaching. When Cd was associated with large colloid particles, the reduction of soil permeability caused Cd accumulation in deeper soil. In addition, the slow process of disintegration of soil clay during chemical leaching might result in the retardation of peak Cd effluence. These results suggest the need for caution when using chemical-leaching agents for Cd removal in fine-grained soils.

  20. The Use of Phosphate Amendments for Chemical Immobilization of Uranium in Contaminated Soil.

    Science.gov (United States)

    Baker, M.; Coutelot, F.; Seaman, J. C.

    2017-12-01

    Past Department of Energy (DOE) production of nuclear materials has resulted in uranium (U) contaminated soil and groundwater posing a significant risk to the environment and human health. In situ remediation strategies are typically less expensive and rely on the introduction of chemical additives in order to reduce contaminant migration and ultimately the associated exposure hazard. Phosphate addition to U-contaminated subsurface environments has been proposed as a U remediation strategy. Saturated and unsaturated batch experiments were performed to investigate the ability of three different phosphate source treatments: hydroxyapatite (HA), phytic acid (IP6) and sodium tripolyphosphate (TPP) to chemically immobilize U in contaminated Savannah River Site (SRS) soil (2,040 mg U/kg soil). Amendment treatments ranged from 925 to 4620 mg P /kg soil. Unsaturated test samples were equilibrated for 3 weeks at 60% of the soil's field capacity, followed by pore-water extraction by centrifugation to provide an indication of the remaining mobile U fraction. Saturated batch experiments were equilibrated on an orbital shaker for 30 days under both oxic and anoxic conditions, with aliquots taken at specific intervals for chemical analysis. In the saturated microcosms, HA decreased the mobile U concentration by 98% in both redox environments and at all treatment levels. IP6 and TPP were able to decrease the soluble U concentration at low treatment levels, but tended to release U at higher treatment levels compared to the control. Unsaturated microcosms also showed HA to be the most effective treatment for immobilizing U, but IP6 and TPP were as effective as HA at the lowest treatment level. The limited contaminant immobilization following TPP and IP6 amendments correlated with the dispersion of organic matter and organo-mineral colloids. For both experiment types, TPP and IP6 samples showed a very limited ortho-phosphate (PO4-) in the solution, indicating the slow mineralization

  1. [Exploration of microcosmic Chinese medicine used by western medicine].

    Science.gov (United States)

    Zheng, Zhi-jing

    2015-02-01

    "Microcosmic syndrome", "treatment based on syndrome differentiation", and "combination of disease identification and syndrome differentiation" generally refer to a mode: following the syndrome if with no disease identified, following the disease if with no syndrome type differentiated. For example, Chinese medical treatment of hypertension, high blood lipids, increased transaminase, and so on candirectly use Chinese recipes, but no longer with syndrome differentiation. Clinical application of Chinese patent medicine can also obtain favorable clinical. Western doctors need not follow syndrome differentiation. The invention of artemisinin was screened from more than 40 000 kinds of compounds and herbs, but with no reference of any traditional Chinese medical theory. A lot of folk remedy and empirical recipes have obtained effective efficacy but unnecessarily with profound Chinese medical theories. Various evidences showed that disease can also be cured without syndrome differentiation. I held that it might be associated with the same mechanism of Chinese medicine and Western medicine. Any disease can be cured or alleviated by Chinese medicine is a result from its modern pharmacological effect, which is achieved by improving etiologies, and pathogeneses. I was inspired by whether we can directly use traditional Chinese medicine with modern pharmacological effects to treat symptomatic disease. So I raised an idea of microcosmic Chinese medicine used by Western medicine, i.e., we find and use Chinese herbs with relatively effective modern pharmacological effect to treat diseases targeting at patients' clinical symptoms and signs, as well as various positive laboratory results (collectively called as microscopic dialectical indicators). More Western doctors would use it to treat disease due to omission of complicated and mysterious syndrome differentiation. This will promote extensive application and expansion of Chi- nese medicine and pharmacy, enlarge the team of

  2. Aquatic risk assessment of a realistic exposure to pesticides used in bulb crops: a microcosm study

    NARCIS (Netherlands)

    Wijngaarden, van R.P.A.; Cuppen, J.G.M.; Arts, G.H.P.; Crum, S.J.H.; Hoorn, van den M.W.; Brink, van den P.J.; Brock, T.C.M.

    2004-01-01

    The fungicide fluazinam, the insecticide lambda-cyhalothrin, and the herbicides asulam and metamitron were applied to indoor freshwater microcosms (water volume approximately 0.6 m3). The treatment regime was based on a realistic application scenario in tulip cultivation. Concentrations of each

  3. Modification of the USLE K factor for soil erodibility assessment on calcareous soils in Iran

    Science.gov (United States)

    Ostovari, Yaser; Ghorbani-Dashtaki, Shoja; Bahrami, Hossein-Ali; Naderi, Mehdi; Dematte, Jose Alexandre M.; Kerry, Ruth

    2016-11-01

    The measurement of soil erodibility (K) in the field is tedious, time-consuming and expensive; therefore, its prediction through pedotransfer functions (PTFs) could be far less costly and time-consuming. The aim of this study was to develop new PTFs to estimate the K factor using multiple linear regression, Mamdani fuzzy inference systems, and artificial neural networks. For this purpose, K was measured in 40 erosion plots with natural rainfall. Various soil properties including the soil particle size distribution, calcium carbonate equivalent, organic matter, permeability, and wet-aggregate stability were measured. The results showed that the mean measured K was 0.014 t h MJ- 1 mm- 1 and 2.08 times less than the estimated mean K (0.030 t h MJ- 1 mm- 1) using the USLE model. Permeability, wet-aggregate stability, very fine sand, and calcium carbonate were selected as independent variables by forward stepwise regression in order to assess the ability of multiple linear regression, Mamdani fuzzy inference systems and artificial neural networks to predict K. The calcium carbonate equivalent, which is not accounted for in the USLE model, had a significant impact on K in multiple linear regression due to its strong influence on the stability of aggregates and soil permeability. Statistical indices in validation and calibration datasets determined that the artificial neural networks method with the highest R2, lowest RMSE, and lowest ME was the best model for estimating the K factor. A strong correlation (R2 = 0.81, n = 40, p soils.

  4. Artificial soils and waste products. Theme report 2

    Energy Technology Data Exchange (ETDEWEB)

    O`Riordan, N.J. [Ove Arup and Partners, London (United Kingdom); Tammirinne, M. [Technical Research Centre of Finland (Finland); Skarzynska, K. [University of Agriculture, Krakow, (Poland)

    1995-05-01

    Increasing pressure to minimise waste, recycle and manage finite aggregate resources has lead to the use of waste materials for engineered fills. Techniques to deal with materials such as colliery waste and power station ashes are maturing. Other materials such as lime stabilised soils, tyre/soil and polystyrene soil mixtures are being investigated. As efforts to reduce waste continue, so greater demands will be placed upon engineered land filling. This report summarises current practice and applications in this important area of geotechnical activity. Increasing economic and political pressure to reduce waste will lead to the development of many hybrid soils and the reuse of waste materials in innovative ways: thereby extending the chain of utility. Major advances in the understanding of real soils and pore fluids will enable additives such as cements, shredded tyres, expanded polystyrene, etc, to be incorporated with confidence to produce useful and durable engineering materials with predictable behaviour. Large stockpiles of mineral wastes provide a potential source of secondary aggregates. A flexible approach to the specification of engineering materials is needed so that such waste can be reused. Evidence from the reuse of colliery and other waste materials suggests that tunneling spoil can be treated to produce potentially useful secondary aggregates. Material delivered to materials suggests that tunneling spoil can be trated to produce potentially useful secondary aggregates. Material delivered to landfill sites will become progressively higher in contamination content which will place greater demands upon containment systems. Formalised risk assessment of landfill containment systems will grow, and further research in definition of failure scenarios and probability of occurrence is necessary. (AB) 71 refs.

  5. Comparative toxicity in earthworms Eisenia fetida and Lumbricus terrestris exposed to cadmium nitrate using artificial soil and filter paper protocols

    Energy Technology Data Exchange (ETDEWEB)

    Fitzpatrick, L.C.; Goven, A.J. [Univ. of North Texas, Denton, TX (United States); Muratti-Ortiz, J.F. [City of Denton Water/Wastewater Laboratory, TX (United States); Venables, B.J. [TRAC Laboratories Inc., Denton, TX (United States)

    1996-07-01

    Earthworms are ideal soil organisms for use in terrestrial ecotoxicology. As such, several earthworm protocols have been developed for testing toxic potential of chemicals and contaminated soils. Of these, the 48-h filter paper contact (FP) and the 14-d artificial soil exposure (AS) protocols, using mortality (LC50) as the toxic endpoint and Eisenia fetida as the test species, have received the most attention, with the latter being adopted by both OECD and EEC in Europe and the Environmental Protection Agency (USEPA) in the United States. Although the FP technique, adopted by EEC, provides for inexpensive reproducible toxicity screening for chemicals (i.e. establishing relative toxicities), it has been criticized for lacking the ecotoxicological relevance of the AS protocol. Choice of earthworm species for laboratory testing also has been controversial. The manure worm, E. fetida, is criticized for not being sufficiently sensitive to chemicals or representative of {open_quotes}typical{close_quotes} earthworms. Lumbricus terrestris and Apporectodea caliginosa have been suggested as more sensitive and ecologically relevant earthworms by Dean-Ross and Martin, respectively. This paper compares the AS and FP protocols in assessing toxicity of cadminum to L. terrestris and E. fetida using LC50s and LC50s. 19 refs., 2 tabs.

  6. Soil aquifer treatment of artificial wastewater under saturated conditions

    KAUST Repository

    Essandoh, H. M K; Tizaoui, Chedly; Mohamed, Mostafa H A; Amy, Gary L.; Brdjanovic, Damir

    2011-01-01

    A 2000 mm long saturated laboratory soil column was used to simulate soil aquifer treatment under saturated conditions to assess the removal of chemical and biochemical oxygen demand (COD and BOD), dissolved organic carbon (DOC), nitrogen

  7. Evaluation of ethyl tert-butyl ether biodegradation in a contaminated aquifer by compound-specific isotope analysis and in situ microcosms

    Energy Technology Data Exchange (ETDEWEB)

    Bombach, Petra, E-mail: petra.bombach@ufz.de [UFZ – Helmholtz Centre for Environmental Research, Department of Isotope Biogeochemistry, Permoserstrasse 15, D-04318 Leipzig (Germany); Isodetect GmbH Leipzig, Deutscher Platz 5b, D-04103 Leipzig (Germany); Nägele, Norbert [Kuvier the Biotech Company S.L., Ctra. N-I, p.k. 234–P.E. INBISA 23" a, E-09001 Burgos (Spain); Rosell, Mònica [UFZ – Helmholtz Centre for Environmental Research, Department of Isotope Biogeochemistry, Permoserstrasse 15, D-04318 Leipzig (Germany); Grup de Mineralogia Aplicada i Medi Ambient, Departament de Cristallografia, Mineralogia i Dipòsits Minerals, Facultat de Geologia, Universitat de Barcelona (UB), C/Martí i Franquès s/n, 08028 Barcelona (Spain); Richnow, Hans H. [UFZ – Helmholtz Centre for Environmental Research, Department of Isotope Biogeochemistry, Permoserstrasse 15, D-04318 Leipzig (Germany); Fischer, Anko [Isodetect GmbH Leipzig, Deutscher Platz 5b, D-04103 Leipzig (Germany)

    2015-04-09

    Highlights: • In situ biodegradation of ETBE was investigated in a fuel contaminated aquifer. • Degradation was studied by CSIA and in situ microcosms in combination with TLFA-SIP. • ETBE was degraded when ETBE was the main groundwater contaminant. • ETBE was also degraded in the presence of BTEX and MTBE. • Hydrochemical analysis indicated aerobic and anaerobic ETBE biodegradation. - Abstract: Ethyl tert-butyl ether (ETBE) is an upcoming groundwater pollutant in Europe whose environmental fate has been less investigated, thus far. In the present study, we investigated the in situ biodegradation of ETBE in a fuel-contaminated aquifer using compound-specific stable isotope analysis (CSIA), and in situ microcosms in combination with total lipid fatty acid (TLFA)-stable isotope probing (SIP). In a first field investigation, CSIA revealed insignificant carbon isotope fractionation, but low hydrogen isotope fractionation of up to +14‰ along the prevailing anoxic ETBE plume suggesting biodegradation of ETBE. Ten months later, oxygen injection was conducted to enhance the biodegradation of petroleum hydrocarbons (PH) at the field site. Within the framework of this remediation measure, in situ microcosms loaded with [{sup 13}C{sub 6}]-ETBE (BACTRAP{sup ®}s) were exposed for 119 days in selected groundwater wells to assess the biodegradation of ETBE by TLFA-SIP under the following conditions: (i) ETBE as main contaminant; (ii) ETBE as main contaminant subjected to oxygen injection; (iii) ETBE plus other PH; (iv) ETBE plus other PH subjected to oxygen injection. Under all conditions investigated, significant {sup 13}C-incorporation into microbial total lipid fatty acids extracted from the in situ microcosms was found, providing clear evidence of ETBE biodegradation.

  8. Evaluation of ethyl tert-butyl ether biodegradation in a contaminated aquifer by compound-specific isotope analysis and in situ microcosms

    International Nuclear Information System (INIS)

    Bombach, Petra; a, E-09001 Burgos (Spain))" data-affiliation=" (Kuvier the Biotech Company S.L., Ctra. N-I, p.k. 234–P.E. INBISA 23a, E-09001 Burgos (Spain))" >Nägele, Norbert; Rosell, Mònica; Richnow, Hans H.; Fischer, Anko

    2015-01-01

    Highlights: • In situ biodegradation of ETBE was investigated in a fuel contaminated aquifer. • Degradation was studied by CSIA and in situ microcosms in combination with TLFA-SIP. • ETBE was degraded when ETBE was the main groundwater contaminant. • ETBE was also degraded in the presence of BTEX and MTBE. • Hydrochemical analysis indicated aerobic and anaerobic ETBE biodegradation. - Abstract: Ethyl tert-butyl ether (ETBE) is an upcoming groundwater pollutant in Europe whose environmental fate has been less investigated, thus far. In the present study, we investigated the in situ biodegradation of ETBE in a fuel-contaminated aquifer using compound-specific stable isotope analysis (CSIA), and in situ microcosms in combination with total lipid fatty acid (TLFA)-stable isotope probing (SIP). In a first field investigation, CSIA revealed insignificant carbon isotope fractionation, but low hydrogen isotope fractionation of up to +14‰ along the prevailing anoxic ETBE plume suggesting biodegradation of ETBE. Ten months later, oxygen injection was conducted to enhance the biodegradation of petroleum hydrocarbons (PH) at the field site. Within the framework of this remediation measure, in situ microcosms loaded with [ 13 C 6 ]-ETBE (BACTRAP ® s) were exposed for 119 days in selected groundwater wells to assess the biodegradation of ETBE by TLFA-SIP under the following conditions: (i) ETBE as main contaminant; (ii) ETBE as main contaminant subjected to oxygen injection; (iii) ETBE plus other PH; (iv) ETBE plus other PH subjected to oxygen injection. Under all conditions investigated, significant 13 C-incorporation into microbial total lipid fatty acids extracted from the in situ microcosms was found, providing clear evidence of ETBE biodegradation

  9. Effects of imidacloprid on the ecology of sub-tropical freshwater microcosms.

    Science.gov (United States)

    Sumon, Kizar Ahmed; Ritika, Afifat Khanam; Peeters, Edwin T H M; Rashid, Harunur; Bosma, Roel H; Rahman, Md Shahidur; Fatema, Mst Kaniz; Van den Brink, Paul J

    2018-05-01

    The neonicotinoid insecticide imidacloprid is used in Bangladesh for a variety of crop protection purposes. Imidacloprid may contaminate aquatic ecosystems via spray drift, surface runoff and ground water leaching. The present study aimed at assessing the fate and effects of imidacloprid on structural (phytoplankton, zooplankton, macroinvertebrates and periphyton) and functional (organic matter decomposition) endpoints of freshwater, sub-tropical ecosystems in Bangladesh. Imidacloprid was applied weekly to 16 freshwater microcosms (PVC tanks containing 400 L de-chlorinated tap water) at nominal concentrations of 0, 30, 300, 3000 ng/L over a period of 4 weeks. Results indicated that imidacloprid concentrations from the microcosm water column declined rapidly. Univariate and multivariate analysis showed significant effects of imidacloprid on the zooplankton and macroinvertebrate community, some individual phytoplankton taxa, and water quality variables (i.e. DO, alkalinity, ammonia and nitrate), with Cloeon sp., Diaptomus sp. and Keratella sp. being the most affected species, i.e. showing lower abundance values in all treatments compared to the control. The observed high sensitivity of Cloeon sp. and Diaptomus sp. was confirmed by the results of single species tests. No significant effects were observed on the species composition of the phytoplankton, periphyton biomass and organic matter decomposition for any of the sampling days. Our study indicates that (sub-)tropical aquatic ecosystems can be much more sensitive to imidacloprid compared to temperate ones. Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

  10. Interactions among buffelgrass, phenanthrene and phenanthrene-degrading bacteria in gnotobiotic microcosms.

    Science.gov (United States)

    Robert, Francoise M; Sun, Wenhao H; Toma, Marisa; Jones, Ryan K; Tang, Chung-Shih

    2008-07-15

    An experiment was undertaken in gnotobiotic microcosms to determine the role of buffelgrass (Cenchrus ciliaris) and a phenanthrene-degrading bacterium (strain PM600) in the degradation of phenanthrene. The Gram-negative bacterium was identified as a Sphingomonas sp. by 16S rRNA gene sequence analysis and as S. paucimobilis by biochemical tests (API 20 NE strips). Its yellow pigment corresponded to nostoxanthin and its cellular fatty acids were typical of the genus Sphingomonas. Moreover, it was devoid of lipopolysaccharides. Strain PM600 was tested for growth on mineral medium supplemented with No. 2 diesel, hexadecane, mineral oil, pristane, phenanthrene, and pyrene as single carbon sources. It was capable of utilizing phenanthrene only. In the gnotobiotic microcosms silica sand was either or not supplemented with 150 mg of phenanthrene kg(-1) sand, inoculated with strain PM600, and planted to sterile young seedlings of buffelgrass. After 28 days, 67% of the reduction of the phenanthrene concentration was assigned to degradation by the bacterium and ca. 20% to abiotic factors. No statistically significant effect of the young buffelgrass was found. In the absence of phenanthrene, the bacterial population significantly increased in the rhizosphere of buffelgrass. However, in the presence of buffelgrass and phenanthrene, the bacterial population preferentially responded to phenanthrene. The growth of buffelgrass was severely curtailed by phenanthrene in the absence of the bacterium. However, strain PM600 effectively protected buffelgrass against the phytotoxicity of phenanthrene.

  11. Distributions of imidacloprid, imidacloprid-olefin and imidacloprid-urea in green plant tissues and roots of rapeseed (Brassica napus) from artificially contaminated potting soil.

    Science.gov (United States)

    Seifrtova, Marcela; Halesova, Tatana; Sulcova, Klara; Riddellova, Katerina; Erban, Tomas

    2017-05-01

    Imidacloprid-urea is the primary imidacloprid soil metabolite, whereas imidacloprid-olefin is the main plant-relevant metabolite and is more toxic to insects than imidacloprid. We artificially contaminated potting soil and used quantitative UHPLC-QqQ-MS/MS to determine the imidacloprid, imidacloprid-olefin and imidacloprid-urea distributions in rapeseed green plant tissues and roots after 4 weeks of exposure. In soil, the imidacloprid/imidacloprid-urea molar ratios decreased similarly after the 250 and 2500 µg kg -1 imidacloprid treatments. The imidacloprid/imidacloprid-urea molar ratios in the root and soil were similar, whereas in the green plant tissue, imidacloprid-urea increased more than twofold compared with the root. Although imidacloprid-olefin was prevalent in the green plant tissues, with imidacloprid/imidacloprid-olefin molar ratios of 2.24 and 1.47 for the 250 and 2500 µg kg -1 treatments respectively, it was not detected in the root. However, imidacloprid-olefin was detected in the soil after the 2500 µg kg -1 imidacloprid treatment. Significant proportions of imidacloprid-olefin and imidacloprid-urea in green plant tissues were demonstrated. The greater imidacloprid supply increased the imidacloprid-olefin/imidacloprid molar ratio in the green plant tissues. The absence of imidacloprid-olefin in the root excluded its retransport from leaves. The similar imidacloprid/imidacloprid-urea ratios in the soil and root indicated that the root serves primarily for transporting these substances. © 2016 Society of Chemical Industry. © 2016 Society of Chemical Industry.

  12. Enhancement and inhibition of microbial activity in hydrocarbon- contaminated arctic soils: Implications for nutrient-amended bioremediation

    Science.gov (United States)

    Braddock, J.F.; Ruth, M.L.; Catterall, P.H.; Walworth, J.L.; McCarthy, K.A.

    1997-01-01

    Bioremediation is being used or proposed as a treatment option at many hydrocarbon-contaminated sites. One such site is a former bulk-fuel storage facility near Barrow, AK, where contamination persists after approximately 380 m3 of JP-5 was spilled in 1970. The soil at the site is primarily coarse sand with low organic carbon (soil from this site in laboratory microcosms and in mesocosms incubated for 6 weeks in the field. Nitrogen was the major limiting nutrient in this system, but microbial populations and activity were maximally enhanced by additions of both nitrogen and phosphorus. When nutrients were added to soil in the field at three levels of N:P (100:45, 200:90, and 300:135 mg/kg soil), the greatest stimulation in microbial activity occurred at the lowest, rather than the highest, level of nutrient addition. The total soil-water potentials ranged from -2 to -15 bar with increasing levels of fertilizer. Semivolatile hydrocarbon concentrations declined significantly only in the soils treated at the low fertilizer level. These results indicate that an understanding of nutrient effects at a specific site is essential for successful bioremediation.Bioremediation is being used or proposed as a treatment option at many hydrocarbon-contaminated sites. One such site is a former bulk-fuel storage facility near Barrow, AK, where contamination persists after approximately 380 m3 of JP-5 was spilled in 1970. The soil at the site is primarily coarse sand with low organic carbon (soil from this site in laboratory microcosms and in mesocosms incubated for 6 weeks in the field. Nitrogen was the major limiting nutrient in this system, but microbial populations and activity were maximally enhanced by additions of both nitrogen and phosphorus. When nutrients were added to soil in the field at three levels of N:P (100:45, 200:90, and 300:135 mg/kg soil), the greatest stimulation in microbial activity occurred at the lowest, rather than the highest, level of nutrient addition

  13. The effect of soil habitat connectivity on microbial interactions, community structure and diversity: a microcosm-based approach

    NARCIS (Netherlands)

    Wolf, A.B.

    2014-01-01

    Soils contain tremendous microbial phylogenetic and functional diversity. Recent advances in the application of molecular methods into microbial ecology have provided a new appreciation of the extent of soil-borne microbial diversity, but our understanding of the forces that shape and maintain this

  14. Visualization of soil structure and pore structure modifications by pioneering ground beetles (Cicindelidae) in surface sediments of an artificial catchment

    Science.gov (United States)

    Badorreck, Annika; Gerke, Horst H.; Weller, Ulrich; Vontobel, Peter

    2010-05-01

    An artificial catchment was constructed to study initial soil and ecosystem development. As a key process, the pore structure dynamics in the soil at the surface strongly influences erosion, infiltration, matter dynamics, and vegetation establishment. Little is known, however, about the first macropore formation in the very early stage. This presentation focuses on observations of soil pore geometry and its effect on water flow at the surface comparing samples from three sites in the catchment and in an adjacent "younger" site composed of comparable sediments. The surface soil was sampled in cylindrical plastic rings (10 cm³) down to 2 cm depth in three replicates each site and six where caves from pioneering ground-dwelling beetles Cicindelidae were found. The samples were scanned with micro-X-ray computed tomography (at UFZ-Halle, Germany) with a resolution of 0.084 mm. The infiltration dynamics were visualized with neutronradiography (at Paul-Scherer-Institute, Switzerland) on slab-type soil samples in 2D. The micro-tomographies exhibit formation of surface sealing whose thickness and intensity vary with silt and clay content. The CT images show several coarser- and finer-textured micro-layers at the sample surfaces that were formed as a consequence of repeated washing in of finer particles in underlying coarser sediment. In micro-depressions, the uppermost layers consist of sorted fine sand and silt due to wind erosion. Similar as for desert pavements, a vesicular pore structure developed in these sediments on top, but also scattered in fine sand- and silt-enriched micro-layers. The ground-dwelling activity of Cicindelidae beetles greatly modifies the soil structure through forming caves in the first centimetres of the soil. Older collapsed caves, which form isolated pores within mixed zones, were also found. The infiltration rates were severely affected both, by surface crusts and activity of ground-dwelling beetles. The observations demonstrate relatively

  15. Simulated acid rain effects on soil chemistry and microbiology

    International Nuclear Information System (INIS)

    Gigliotti, C.; Falappi, D.; Farini, A.; Sorlini, C.; Milan Univ.; Molise Univ.

    1992-01-01

    A research study was carried out regarding the effects of artificial rains at different pH's (3.1, 4.0, 5.6) on soil samples from Appiano Gentile pinewood. Chemical parameters, biological activities and microbiological groups, particularly sensitive to possible variations in the presence of pH changes, were monitored after 2, 4 and 6 months of treatment of the soil on eluate obtained from treatment with artificial acid rains. The paper reports the results research

  16. Autogenic succession and deterministic recovery following disturbance in soil bacterial communities

    DEFF Research Database (Denmark)

    Jurburg, Stephanie D.; Nunes, Ines Marques; Stegen, James C.

    2017-01-01

    The response of bacterial communities to environmental change may affect local to global nutrient cycles. However the dynamics of these communities following disturbance are poorly understood, given that they are often evaluated over macro-ecological time scales and end-point measurements. In ord...... diversity and functional redundancy, respond to disturbances like many macro-ecological systems and exhibit path-dependent, autogenic dynamics during secondary succession. These results highlight the role of autogenic factors and successional dynamics in microbial recovery....... to understand the successional trajectory of soil bacterial communities following disturbances and the mechanisms controlling these dynamics at a scale relevant for these organisms, we subjected soil microcosms to a heat disturbance and followed the community composition of active bacteria over 50 days...... slowed down, and a stability phase (after 29 days), during which the community tended towards its original composition. Phylogenetic turnover patterns indicated that the community experienced stronger deterministic selection during recovery. Thus, soil bacterial communities, despite their extreme...

  17. Short-term parasite-infection alters already the biomass, activity and functional diversity of soil microbial communities

    Science.gov (United States)

    Li, Jun-Min; Jin, Ze-Xin; Hagedorn, Frank; Li, Mai-He

    2014-11-01

    Native parasitic plants may be used to infect and control invasive plants. We established microcosms with invasive Mikania micrantha and native Coix lacryma-jobi growing in mixture on native soils, with M. micrantha being infected by parasitic Cuscuta campestris at four intensity levels for seven weeks to estimate the top-down effects of plant parasitism on the biomass and functional diversity of soil microbial communities. Parasitism significantly decreased root biomass and altered soil microbial communities. Soil microbial biomass decreased, but soil respiration increased at the two higher infection levels, indicating a strong stimulation of soil microbial metabolic activity (+180%). Moreover, a Biolog assay showed that the infection resulted in a significant change in the functional diversity indices of soil microbial communities. Pearson correlation analysis indicated that microbial biomass declined significantly with decreasing root biomass, particularly of the invasive M. micrantha. Also, the functional diversity indices of soil microbial communities were positively correlated with soil microbial biomass. Therefore, the negative effects on the biomass, activity and functional diversity of soil microbial community by the seven week long plant parasitism was very likely caused by decreased root biomass and root exudation of the invasive M. micrantha.

  18. Use Of Statistical Tools To Evaluate The Reductive Dechlorination Of High Levels Of TCE In Microcosm Studies

    Science.gov (United States)

    A large, multi-laboratory microcosm study was performed to select amendments for supporting reductive dechlorination of high levels of trichloroethylene (TCE) found at an industrial site in the United Kingdom (UK) containing dense non-aqueous phase liquid (DNAPL) TCE. The study ...

  19. Effects of invertebrate predators and a pesticide on temporary pond microcosms used for aquatic toxicity testing

    International Nuclear Information System (INIS)

    Barry, Michael J.; Davies, Warren

    2004-01-01

    The effects of increased trophic complexity, through the addition of predatory notonectids (Anisops deanei), on temporary pond microcosms used for aquatic toxicity testing were studied. Replicate microcosms were established using sediment from a dried temporary pond, and treated with one of four concentrations of the organochlorine pesticide endosulfan (0, 1, 10 or 50 μg/L), in the presence or absence of six A. deanei. The tanks were sampled regularly for nine weeks following the addition of the predators and the entire contents of each tank counted after 12 weeks. Analysis using non-metric multidimensional scaling (MDS) and non-parametric MANOVA showed that both Anisops and endosulfan at concentrations >10 μg/L significantly altered community structure. However, an interaction between the effects of Anisops and the effects of endosulfan was not detected. The addition of Anisops did not increase the variability of response and thus did not reduce the sensitivity of the test method

  20. Sobrevivência de fungos fitopatogênicos habitantes do solo, em microcosmo, simulando solarização com prévia incorporação de materiais orgânicos Survival of soilborne plant pathogenic fungi in soil solarization simulation (microcosm associated with the incorporation of organic materials

    Directory of Open Access Journals (Sweden)

    Márcia Michelle de Queiroz Ambrósio

    2009-02-01

    unfeasible vast agricultural areas. Organic materials associated race 2; Macrophomina phaseolina; Rhizoctonia solani AG-4 HGI with soil solarization helps the retention of volatile fungitoxic and Sclerotium rolfsii. A nylon bag containing structures of each compounds from the degradation of materials which are lethal to pathogen was placed in each one of the two glass cameras (microcosm several soil fungi. The objective of this experiment was to search for for each evaluated period. Structures of the fungi were also maintained new organic materials that produce volatile fungitoxic compounds in laboratory conditions as the check treatment. All materials when capable to control the resistance structures produced by the soilborne associated the simulation of the soil solarization gave the best control phytopathogenic fungi but in conditions of association with simulation of the structures of all the studied soilborne phytopathogenic fungi. of soil solarization (microcosm. The present work consisted of six However, variation was observed in the control of the fungi. The treatments (Solarization; Solarization+brocollis; Solarization + treatment which only simulated the solarization did not control any eucalyptus; Solarization+castor plants; Solarization + cassava and fungus.

  1. Effects of different remediation treatments on crude oil contaminated saline soil.

    Science.gov (United States)

    Gao, Yong-Chao; Guo, Shu-Hai; Wang, Jia-Ning; Li, Dan; Wang, Hui; Zeng, De-Hui

    2014-12-01

    Remediation of the petroleum contaminated soil is essential to maintain the sustainable development of soil ecosystem. Bioremediation using microorganisms and plants is a promising method for the degradation of crude oil contaminants. The effects of different remediation treatments, including nitrogen addition, Suaeda salsa planting, and arbuscular mycorrhiza (AM) fungi inoculation individually or combined, on crude oil contaminated saline soil were assessed using a microcosm experiment. The results showed that different remediation treatments significantly affected the physicochemical properties, oil contaminant degradation and bacterial community structure of the oil contaminated saline soil. Nitrogen addition stimulated the degradation of total petroleum hydrocarbon significantly at the initial 30d of remediation. Coupling of different remediation techniques was more effective in degrading crude oil contaminants. Applications of nitrogen, AM fungi and their combination enhanced the phytoremediation efficiency of S. salsa significantly. The main bacterial community composition in the crude oil contaminated saline soil shifted with the remediation processes. γ-Proteobacteria, β-Proteobacteria, and Actinobacteria were the pioneer oil-degraders at the initial stage, and Firmicutes were considered to be able to degrade the recalcitrant components at the later stage. Copyright © 2014 Elsevier Ltd. All rights reserved.

  2. Incorporation of 13C labeled Pinus ponderosa needle and fine root litter into soil organic matter measured by Py-GC/MS-C-IRMS

    Science.gov (United States)

    Mambelli, S.; Gleixner, G.; Dawson, T. E.; Bird, J. A.; Torn, M. S.

    2006-12-01

    Developing effective strategies for enhancing C storage in soils requires understanding the influence of plant C quality. In turn, plant C quality impacts the decay continuum between plant residue and humified, stable SOM. This remains one of the least understood aspects of soil biogeochemistry. We investigated the initial phase of incorporation of 13C labeled Pinus ponderosa needle and fine root litter into SOM. The two litter types were placed in separate microcosms in the A horizon in a temperate conifer soil. Curie-point pyrolysis-gas chromatography coupled with on-line mass spectrometry and isotope ratio mass spectrometry (Py-GC/MS-C- IRMS) were used to determine the identity and the 13C enrichment of pyrolysis products (fragments of carbohydrates, lignin, proteins and lipids). We compared the two initial litter types, needles and fine roots, to samples of the bulk soil (A horizon, < 2mm) and soil humin fraction (from chemical solubility) obtained from each microcosm 1.5y after litter addition. Pyrolysis of plant material and SOM produced 56 suitable products for isotopic analysis; of them, 15 occurred in both the litter and bulk soil, 7 in both the litter and the humin fraction and 9 in both bulk soil and the humin fraction. The pyrolysis products found in common in the plant and soil were related either to polysaccharides or were non-specific and could have originated from various precursors. The data suggest that the majority of plant inputs, both from needles or fine roots, were degraded very rapidly. In the humin fraction, the most recalcitrant pool of C in soil, with a measured turnover time of 260y (this soil), only products from the fragmentation of polysaccharides and alkyl-benzene compounds were found. Comparisons of the enrichment normalized by input level suggest little difference between the incorporation of C from needles versus fine roots into SOM. The most enriched fragments in the humin fraction were products from polysaccharides degradation

  3. Review of Artificial Abrasion Test Methods for PV Module Technology

    Energy Technology Data Exchange (ETDEWEB)

    Miller, David C. [National Renewable Energy Lab. (NREL), Golden, CO (United States); Muller, Matt T. [National Renewable Energy Lab. (NREL), Golden, CO (United States); Simpson, Lin J. [National Renewable Energy Lab. (NREL), Golden, CO (United States)

    2016-08-01

    This review is intended to identify the method or methods--and the basic details of those methods--that might be used to develop an artificial abrasion test. Methods used in the PV literature were compared with their closest implementation in existing standards. Also, meetings of the International PV Quality Assurance Task Force Task Group 12-3 (TG12-3, which is concerned with coated glass) were used to identify established test methods. Feedback from the group, which included many of the authors from the PV literature, included insights not explored within the literature itself. The combined experience and examples from the literature are intended to provide an assessment of the present industry practices and an informed path forward. Recommendations toward artificial abrasion test methods are then identified based on the experiences in the literature and feedback from the PV community. The review here is strictly focused on abrasion. Assessment methods, including optical performance (e.g., transmittance or reflectance), surface energy, and verification of chemical composition were not examined. Methods of artificially soiling PV modules or other specimens were not examined. The weathering of artificial or naturally soiled specimens (which may ultimately include combined temperature and humidity, thermal cycling and ultraviolet light) were also not examined. A sense of the purpose or application of an abrasion test method within the PV industry should, however, be evident from the literature.

  4. Effects of hydrocarbon contamination on a free living marine nematode community: Results from microcosm experiments

    Energy Technology Data Exchange (ETDEWEB)

    Mahmoudi, E.; Essid, N.; Beyrem, H.; Hedfi, A.; Boufahja, F.; Aissa, P. [Laboratoire de Biosurveillance de l' Environnement, Zarzouna (Tunisia). Faculte des Sciences de Bizerte; Vitiello, P. [Centre d' Oceanologie de Marseille (France)

    2005-11-15

    Anthropogenic inputs of crude and refined petroleum hydrocarbons into the sea require knowledge of the effects of these contaminants on the receiving assemblages of organisms. A microcosm experiment was carried out to study the influence of diesel on a free living nematode community of a Tunisian lagoon. Sediments were contaminated by diesel that ranged in concentration from 0.5 to 20 mg diesel kg{sup -1} dry weight (dw), and effects were examined after 90 days. Gradual changes in community structure were revealed depending on the quantity of diesel administrated. In the medium (1 mg diesel kg{sup -1} and 5 mg diesel kg{sup -1} (dw)) and high (10 mg diesel kg{sup -1}, 15 mg diesel kg{sup -1} and 20 mg kg{sup -1} (dw)) treated microcosms, most univariate measures, including diversity and species richness, decreased significantly with increasing level of diesel contamination whereas nematode assemblage from the low treated microcosm (0.5 mg diesel kg{sup -1} (dw)) remained unaffected. Results from multivariate analyses of the species abundance data demonstrated that responses of nematode species to the diesel treatments were varied: Chaetonema sp. was eliminated at all doses tested and seemed to be intolerant species to diesel contamination; Pomponema sp. and Oncholaimus campylocercoides were significantly affected at all diesel contamination levels but they were not eliminated, these species were categorized as 'diesel-sensitive'; Hypodontolaimus colesi, Daptonema trabeculosum and Daptonema fallax which significantly increased respectively at 0.5, 1 and 5 mg diesel kg{sup -1} (dw) concentrations and appeared to be 'opportunistic' species at these doses whereas Marylynnia stekhoveni which increased at all high doses (10, 15 and 20 mg diesel kg{sup -1} (dw)) seemed to be a 'diesel-resistant' species. (author)

  5. Survival behaviour and virulence of the fish pathogen Vibrio ordalii in seawater microcosms.

    Science.gov (United States)

    Ruiz, Pamela; Poblete-Morales, Matías; Irgang, Rute; Toranzo, Alicia E; Avendaño-Herrera, Ruben

    2016-06-15

    Vibrio ordalii, the causative agent of atypical vibriosis, is a Gram-negative, motile, rod-shaped bacterium that severely affects the salmonid aquaculture industry. V. ordalii has been biochemically, antigenically and genetically characterized. However, studies on the survival behaviour of this bacterium in aquatic environments are scarce, and there is no information regarding its disease transmission and infectious abilities outside of the fish host or regarding water as a possible reservoir. The present study investigated the survival behaviour of V. ordalii Vo-LM-06 and Vo-LM-18 in sterile and non-sterile seawater microcosms. After a year in sterile seawater without nutrients, 1% of both V. ordalii strains survived (~10(3) colony-forming units ml(-1)), and long-term maintenance did not affect bacterial biochemical or genetic properties. Additionally, V. ordalii maintained for 60 d in sterile seawater remained infective in rainbow trout Oncorhynchus mykiss. However, after 2 d of natural seawater exposure, this bacterium became non-culturable, indicating that autochthonous microbiota may play an important role in survival. Recuperation assays that added fresh medium to non-sterile microcosms did not favour V. ordalii recovery on solid media. Our results contribute towards a better understanding of V. ordalii survival behaviour in seawater ecosystems.

  6. A microcosm system to evaluate the toxicity of the triazine herbicide simazine on aquatic macrophytes

    International Nuclear Information System (INIS)

    Vervliet-Scheebaum, Marco; Straus, Alain; Tremp, Horst; Hamer, Mick; Maund, Stephen J.; Wagner, Edgar; Schulz, Ralf

    2010-01-01

    This study evaluates the effects of the triazine herbicide simazine in an outdoor pond microcosm test system that contained two submerged rooted species (Myriophyllum spicatum and Elodea canadensis) and two emergent rooted species (Persicaria amphibia and Glyceria maxima) over a period of 84 days. Simazine was applied to the microcosms at nominal concentrations of 0.05, 0.5 and 5 mg/L. General biological endpoints and physiological endpoints were used to evaluate herbicide toxicity on macrophytes and the algae developing naturally in the system. Concentration-related responses of macrophytes and algae were obtained for the endpoints selected, resulting in a no observed ecologically adverse effect concentration (NOEAEC) at simazine concentrations of 0.05 mg active ingredient/L after 84 days. E. canadensis was the most negatively affected species based on length increase, which was consistently a very sensitive parameter for all macrophytes. The experimental design presented might constitute a suitable alternative to conventional laboratory single-species testing. - Simazine at concentrations of 0.05 mg/L does not cause long-term negative effects to aquatic macrophytes or algae.

  7. Effects of a herbicide-insecticide mixture in freshwater microcosms: Risk assessment and ecological effect chain

    International Nuclear Information System (INIS)

    Brink, Paul J. van den; Crum, Steven J.H.; Gylstra, Ronald; Bransen, Fred; Cuppen, Jan G.M.; Brock, Theo C.M.

    2009-01-01

    Effects of chronic application of a mixture of the herbicide atrazine and the insecticide lindane were studied in indoor freshwater plankton-dominated microcosms. The macroinvertebrate community was seriously affected at all but the lowest treatment levels, the zooplankton community at the three highest treatment levels, with crustaceans, caddisflies and dipterans being the most sensitive groups. Increased abundance of the phytoplankton taxa Cyclotella sp. was found at the highest treatment level. Threshold levels for lindane, both at population and community level, corresponded well with those reported in the literature. Atrazine produced fewer effects than expected, probably due to decreased grazer stress on the algae as a result of the lindane application. The safety factors set by the Uniform Principles for individual compounds were also found to ensure protection against chronic exposure to a mixture of a herbicide and insecticide at community level, though not always at the population level. - Effects of chronic application of a herbicide-insecticide mixture were studied in indoor freshwater plankton-dominated microcosms. Effects could well be explained by the effects of the individual chemicals alone, no synergetic effects were reported

  8. A microcosm system to evaluate the toxicity of the triazine herbicide simazine on aquatic macrophytes

    Energy Technology Data Exchange (ETDEWEB)

    Vervliet-Scheebaum, Marco, E-mail: marco.vervliet@biologie.uni-freiburg.d [Plant Biotechnology, Faculty of Biology, University of Freiburg, Schaenzlestr. 1, 79104 Freiburg (Germany); Straus, Alain [Plant Biotechnology, Faculty of Biology, University of Freiburg, Schaenzlestr. 1, 79104 Freiburg (Germany); Tremp, Horst [Institute for Environmental Sciences, University Koblenz-Landau, Fortstr. 7, 76829 Landau (Germany); Hamer, Mick [Ecological Sciences, Syngenta Crop Protection AG, Jealott' s Hill International Research Centre, Bracknell, Berkshire RG42 6EY (United Kingdom); Maund, Stephen J. [Ecological Sciences, Syngenta Crop Protection AG, 4002 Basel (Switzerland); Wagner, Edgar [Plant Biotechnology, Faculty of Biology, University of Freiburg, Schaenzlestr. 1, 79104 Freiburg (Germany); Schulz, Ralf [Institute for Environmental Sciences, University Koblenz-Landau, Fortstr. 7, 76829 Landau (Germany)

    2010-02-15

    This study evaluates the effects of the triazine herbicide simazine in an outdoor pond microcosm test system that contained two submerged rooted species (Myriophyllum spicatum and Elodea canadensis) and two emergent rooted species (Persicaria amphibia and Glyceria maxima) over a period of 84 days. Simazine was applied to the microcosms at nominal concentrations of 0.05, 0.5 and 5 mg/L. General biological endpoints and physiological endpoints were used to evaluate herbicide toxicity on macrophytes and the algae developing naturally in the system. Concentration-related responses of macrophytes and algae were obtained for the endpoints selected, resulting in a no observed ecologically adverse effect concentration (NOEAEC) at simazine concentrations of 0.05 mg active ingredient/L after 84 days. E. canadensis was the most negatively affected species based on length increase, which was consistently a very sensitive parameter for all macrophytes. The experimental design presented might constitute a suitable alternative to conventional laboratory single-species testing. - Simazine at concentrations of 0.05 mg/L does not cause long-term negative effects to aquatic macrophytes or algae.

  9. Application of Ultrasonic for Decontamination of Contaminated Soil - 13142

    International Nuclear Information System (INIS)

    Vasilyev, A.P.; Lebedev, N.M.; Savkin, A.E.

    2013-01-01

    The trials of soil decontamination were carried out with the help of a pilot ultrasonic installation in different modes. The installation included a decontamination bath equipped with ultrasonic sources, a precipitator for solution purification from small particles (less than 80 micrometer), sorption filter for solution purification from radionuclides washing out from soil, a tank for decontamination solution, a pump for decontamination solution supply. The trials were carried out on artificially contaminated sand with specific activity of 4.5 10 5 Bk/kg and really contaminated soil from Russian Scientific Center 'Kurchatovsky Institute' (RSC'KI') with specific activity of 2.9 10 4 Bk/kg. It was established that application of ultrasonic intensify the process of soil reagent decontamination and increase its efficiency. The decontamination factor for the artificially contaminated soil was ∼200 and for soil from RSC'KI' ∼30. The flow-sheet diagram has been developed for the new installation as well as determined the main technological characteristics of the equipment. (authors)

  10. Water regime history drives responses of soil Namib Desert microbial communities to wetting events

    Science.gov (United States)

    Frossard, Aline; Ramond, Jean-Baptiste; Seely, Mary; Cowan, Don A.

    2015-07-01

    Despite the dominance of microorganisms in arid soils, the structures and functional dynamics of microbial communities in hot deserts remain largely unresolved. The effects of wetting event frequency and intensity on Namib Desert microbial communities from two soils with different water-regime histories were tested over 36 days. A total of 168 soil microcosms received wetting events mimicking fog, light rain and heavy rainfall, with a parallel “dry condition” control. T-RFLP data showed that the different wetting events affected desert microbial community structures, but these effects were attenuated by the effects related to the long-term adaptation of both fungal and bacterial communities to soil origins (i.e. soil water regime histories). The intensity of the water pulses (i.e. the amount of water added) rather than the frequency of wetting events had greatest effect in shaping bacterial and fungal community structures. In contrast to microbial diversity, microbial activities (enzyme activities) showed very little response to the wetting events and were mainly driven by soil origin. This experiment clearly demonstrates the complexity of microbial community responses to wetting events in hyperarid hot desert soil ecosystems and underlines the dynamism of their indigenous microbial communities.

  11. Levels of concern for radioactive contaminations in soil according to soil protection standards

    International Nuclear Information System (INIS)

    Gellermann, R.; Barkowski, D.; Machtolf, M.

    2016-01-01

    In the paper the question is examined whether the established soil protection standards for carcinogenic substances are also applicable to the assessment of radioactive soil contamination. Referring to the methods applied in soil protection for evaluation of dose-effectrelations and estimations of carcinogenic risks as well as the calculation methods for test values in soil protection ''levels of concern'' for soil contamination by artificial radionuclides are derived. The values obtained are significantly larger than the values for unrestricted clearance of ground according to the German Radiation Protection Ordinance (StrlSchV). The thesis that soil is protected according to environmental standards provided that radiation protection requirements are met needs further checks but can be probably confirmed if the radiation protection requirements are clearly defined.

  12. Lysimeter study with a cambric arenosol exposed to artificial acid rain: I. Concentrations of ions in leachate

    International Nuclear Information System (INIS)

    Sogn, T.A.; Abrahamsen, G.; Stuanes, A.O.

    1993-01-01

    The effects of artificial acid rain on soil leachate composition were studied in a lysimeter experiment. Cambic Arenosol (Typic Udipsamment) in monolith lysimeters was treated for 6 1/2 year with 125 mm yr -1 artificial rain in addition to natural precipitation. Artificial acid rain was produced from groundwater with H 2 SO 4 added. pH levels of 6.1, 4 and 3 were used. Increasing content of H 2 SO 4 in the artificial rain increased the concentration of Ca 2+ and Mg 2+ in the leachate significantly. The pH of the leachate was slightly reduced only by the most acidic treatment (pH 3). The H + retention was not accompanied by a proportionate increase in the Al ion concentration. A slight increase in the Al ion concentration was only observed in the leachate from the pH 3-treated lysimeter. It is concluded that cation exchange and/or weathering were the main buffer mechanisms in the soil. The study supports conclusions from other acidification studies, that acidic precipitation is likely to increase the leaching of Ca 2+ and Mg 2+ from soils. 25 refs., 3 figs., 7 tabs

  13. Effects of artificial soil surface management on changes of ...

    African Journals Online (AJOL)

    Studies of size distribution, stability of the aggregates, and other soil properties are very important due to their influence on tilth, water infiltration, and nutrient dynamics and more importantly on accelerated erosion but are affected by soil surface management. Both chemical e.g. pH, organic carbon, (OC), exchangeable ...

  14. Effect of vegetation removal and water table drawdown on the non-methane biogenic volatile organic compound emissions in boreal peatland microcosms

    Science.gov (United States)

    Faubert, Patrick; Tiiva, Päivi; Rinnan, Åsmund; Räty, Sanna; Holopainen, Jarmo K.; Holopainen, Toini; Rinnan, Riikka

    2010-11-01

    Biogenic volatile organic compound (BVOC) emissions are important in the global atmospheric chemistry and their feedbacks to global warming are uncertain. Global warming is expected to trigger vegetation changes and water table drawdown in boreal peatlands, such changes have only been investigated on isoprene emission but never on other BVOCs. We aimed at distinguishing the BVOCs released from vascular plants, mosses and peat in hummocks (dry microsites) and hollows (wet microsites) of boreal peatland microcosms maintained in growth chambers. We also assessed the effect of water table drawdown (-20 cm) on the BVOC emissions in hollow microcosms. BVOC emissions were measured from peat samples underneath the moss surface after the 7-week-long experiment to investigate whether the potential effects of vegetation and water table drawdown were shown. BVOCs were sampled using a conventional chamber method, collected on adsorbent and analyzed with GC-MS. In hummock microcosms, vascular plants increased the monoterpene emissions compared with the treatment where all above-ground vegetation was removed while no effect was detected on the sesquiterpenes, other reactive VOCs (ORVOCs) and other VOCs. Peat layer from underneath the surface with intact vegetation had the highest sesquiterpene emissions. In hollow microcosms, intact vegetation had the highest sesquiterpene emissions. Water table drawdown decreased monoterpene and other VOC emissions. Specific compounds could be closely associated to the natural/lowered water tables. Peat layer from underneath the surface of hollows with intact vegetation had the highest emissions of monoterpenes, sesquiterpenes and ORVOCs whereas water table drawdown decreased those emissions. The results suggest that global warming would change the BVOC emission mixtures from boreal peatlands following changes in vegetation composition and water table drawdown.

  15. Arbuscular mycorrhizal wheat inoculation promotes alkane and polycyclic aromatic hydrocarbon biodegradation: Microcosm experiment on aged-contaminated soil

    International Nuclear Information System (INIS)

    Ingrid, Lenoir; Lounès-Hadj Sahraoui, Anissa; Frédéric, Laruelle; Yolande, Dalpé; Joël, Fontaine

    2016-01-01

    Very few studies reported the potential of arbuscular mycorrhizal symbiosis to dissipate hydrocarbons in aged polluted soils. The present work aims to study the efficiency of arbuscular mycorrhizal colonized wheat plants in the dissipation of alkanes and polycyclic aromatic hydrocarbons (PAHs). Our results demonstrated that the inoculation of wheat with Rhizophagus irregularis allowed a better dissipation of PAHs and alkanes after 16 weeks of culture by comparison to non-inoculated condition. These dissipations observed in the inoculated soil resulted from several processes: (i) a light adsorption on roots (0.5% for PAHs), (ii) a bioaccumulation in roots (5.7% for PAHs and 6.6% for alkanes), (iii) a transfer in shoots (0.4 for PAHs and 0.5% for alkanes) and mainly a biodegradation. Whereas PAHs and alkanes degradation rates were respectively estimated to 12 and 47% with non-inoculated wheat, their degradation rates reached 18 and 48% with inoculated wheat. The mycorrhizal inoculation induced an increase of Gram-positive and Gram-negative bacteria by 56 and 37% compared to the non-inoculated wheat. Moreover, an increase of peroxidase activity was assessed in mycorrhizal roots. Taken together, our findings suggested that mycorrhization led to a better hydrocarbon biodegradation in the aged-contaminated soil thanks to a stimulation of telluric bacteria and hydrocarbon metabolization in mycorrhizal roots. - Highlights: • Phytoremediation of aged-hydrocarbon polluted soils may be improved using arbuscular mycorrhizal fungi. • Inoculation of wheat with R. irregularis improved dissipation of PAH and alkanes. • Dissipation resulted from adsorption and bioaccumulation in wheat and mainly from biodegradation in soil. • Biodegradation was due to a stimulation of rhizosphere bacteria and an induction of root peroxidase. - Inoculation of wheat by an arbuscular mycorrhizal fungus improves biodegradation of alkanes and polycyclic aromatic hydrocarbons in an aged

  16. Temporal dynamics of the compositions and activities of soil microbial communities post-application of the insecticide chlorantraniliprole in paddy soils.

    Science.gov (United States)

    Wu, Meng; Liu, Jia; Li, Weitao; Liu, Ming; Jiang, Chunyu; Li, Zhongpei

    2017-10-01

    Chlorantraniliprole (CAP) is a newly developed insecticide widely used in rice fields in China. There has been few studies evaluating the toxicological effects of CAP on soil-associated microbes. An 85-day microcosm experiment was performed to reveal the dissipation dynamics of CAP in three types of paddy soils in subtropical China. The effects of CAP on microbial activities (microbial biomass carbon-MBC, basal soil respiration-BSR, microbial metabolic quotient-qCO 2 , acid phosphatase and sucrose invertase activities) in the soils were periodically evaluated. Microbial phospholipid fatty acid (PLFA) analysis was used to evaluate the change of soil microbial community composition on day 14 and 50 of the experiment. CAP residues were extracted using the quick, easy, cheap, effective, rugged, and safe (QuChERS) method and quantification was measured by high performance liquid chromatography (HPLC). The half-lives (DT 50 ) of CAP were in the range of 41.0-53.0 days in the three soils. The results showed that CAP did not impart negative effects on MBC during the incubation. CAP inhibited BSR, qCO 2 , acid phosphatase and sucrose invertase activities in the first 14 days of incubation in all the soils. After day 14, the soil microbial parameters of CAP-treated soils became statistically at par with their controls. Principal component analysis (PCA) determining abundance of biomarker PLFAs indicated that the application of CAP significantly changed the compositions of microbial communities in all three paddy soils on day 14 but the compositions of soil microbial communities recovered by day 50. This study indicates that CAP does not ultimately impair microbial activities and microbial compositions of these three paddy soil types. Copyright © 2017 Elsevier Inc. All rights reserved.

  17. From a microcosm to the catchment scale: studying the fate of organic runoff pollutants in aquatic ecosystems

    Science.gov (United States)

    Böttcher, T.; Schroll, R.

    2009-04-01

    Spray-drift, drainage, erosion and runoff events are the major causes responsible for deportation of agrochemicals as micropollutants to aquatic non-target sites. These processes can lead to the contamination of nearby freshwater ecosystems with considerably high concentrations of xenobiotics. Thus, it is important to unravel the fate of these pollutants and to evaluate their ecological effects. A novel approach to address this goal was established by the development of a microcosm with multiple sampling abilities enabling quantitative assessment of organic volatilisation, mineralization, metabolization and distribution within the aquatic ecosystem. This microcosm system was designed to support modelling approaches of the catchment scale and gain insights into the fate of pesticides simulating a large scale water body. The potential of this microcosm was exemplified for Isoproturon (IPU), a phenylurea derived systemic herbicide, which is frequently found as contaminant in water samples and with the free-floating macrophyte Lemna minor as non-target species, that is common to occur in rural water bodies. During 21 days exposure time, only a small amount of 14C labeled IPU was removed from the aquatic medium. The major portion (about 5%) was accumulated by Lemna minor resulting in a BCF of 15.8. IPU-volatilisation was very low with 0.13% of the initially applied herbicide. Only a minor amount of IPU was completely metabolized, presumably by rhizosphere microorganisms and released as 14CO2. The novel experimental system allowed to quantitatively investigate the fate of IPU and showed a high reproducibility with a mean average 14C-recovery rate of 97.1

  18. Mineral cycling in soil and litter arthropod food chains. Progress report, November 1, 1980-October 31, 1981

    International Nuclear Information System (INIS)

    Crossley, D.A. Jr.

    1980-01-01

    Progress and current status are reported for research projects concerned with mineral element and nutrient dynamics in soil arthropod food chains. Research is performed within the larger context of terrestrial decomposition, in which soil arthropods may act as regulators of nutrient dynamics during decomposition. Research is measuring rates of nutrient accumulation and excretion by using radioactive tracer analogs of nutrients. This year, emphasis has been placed on field work in which soil arthropod population size and nutrients inputs were varied experimentally. The presence of microarthropods in field microcosms increased the mineralization of N and P in each case, but rates were not correlated with arthropod densities. Experiments recently started are using both arthropod and microfloral inhibitors, in open systems on the forest floor, with the objective of quantifying arthropod enhancement of microbial immobilization of nutrients

  19. Phytoremediation of Soils Contaminated by Chlorinnated Hydrocarbons

    Science.gov (United States)

    Cho, C.; Sung, K.; Corapcioglu, M.

    2001-12-01

    In recent years, the possible use of deep rooted plants for phytoremediation of soil contaminants has been offered as a potential alternative for waste management, particularly for in situ remediation of large volumes of contaminated soils. Major objectives of this study are to evaluate the effectiveness of a warm season grass (Eastern Gamagrass) and a cool season prairie grass (Annual Ryegrass) in the phytoremediation of the soil contaminated with volatile organic compounds e.g., trichloroethylene (TCE), tetrachloroethylene (PCE), and 1,1,1-trichloroethane (TCA) and to determine the main mechanisms of target contaminant dissipation. The preliminary tests and laboratory scale tests were conducted to identify the main mechanisms for phytoremediation of the target contaminants, and to apply the technique in green house application under field conditions. The results of microcosm and bioreactor experiments showed that volatilization can be the dominant pathway of the target contaminant mass losses in soils. Toxicity tests, conducted in nutrient solution in the growth room, and in the greenhouse, showed that both Eastern gamagrass and Annual ryegrass could grow without harmful effects at up to 400 ppm each of all three contaminants together. Preliminary greenhouse experimentw were conducted with the 1.5 m long and 0.3 m diameter PVC columns. Soil gas concentrations monitored and microbial biomass in bulk and rhizosphere soil, root properties, and contaminant concentration in soil after 100 days were analyzed. The results showed that the soil gas concentration of contaminants has rapidly decreased especially in the upper soil and the contaminant concentraitons in soil were also significantly decreased to 0.024, 0.228, and 0.002 of C/Co for TCE, PCE and TCA, respectively. Significant plant effects were not found however showed contaminant loss through volatilization and plant contamination by air.

  20. Sequestration of organochlorine pesticides in soils of distinct organic carbon content

    International Nuclear Information System (INIS)

    Zhang Na; Yang Yu; Tao Shu; Liu Yan; Shi Kelu

    2011-01-01

    In the present study, five soil samples with organic carbon contents ranging from 0.23% to 7.1% and aged with technical dichlorodiphenyltrichloroethane (DDT) and hexachlorocyclohexane (HCH) for 15 months were incubated in a sealed chamber to investigate the dynamic changes of the OCP residues. The residues in the soils decreased over the incubation period and finally reached a plateau. Regression analysis showed that degradable fractions of OCPs were negatively correlated with soil organic carbon (SOC) except for α-HCH, while no correlation was found between degradation rate and SOC, which demonstrated that SOC content determines the OCP sequestration fraction in soil. Analysis of the ratio of DDT and its primary metabolites showed that, since it depends on differential sequestration among them, magnitude of (p,p'-DDE + p,p'-DDD)/p,p'-DDT is not a reliable criterion for the identification of new DDT sources. - Research highlights: → Soil organic carbon content determines the OCP sequestration fraction in soil. → Magnitude of (p,p'-DDE + p,p'-DDD)/p,p'-DDT is not a reliable criterion for the identification of new DDT sources. → The more hydrophobic compounds have relatively higher sequestration fractions in soils with SOC contents >2%. → DDD may have higher sorption by soil organic matter than DDE. - The effect of soil organic matter on the sequestration of organochlorine pesticides (HCHs and DDTs) in soils was investigated in an innovative microcosm chamber.

  1. Aerobic degradation of N-methyl-4-nitroaniline (MNA by Pseudomonas sp. strain FK357 isolated from soil.

    Directory of Open Access Journals (Sweden)

    Fazlurrahman Khan

    Full Text Available N-Methyl-4-nitroaniline (MNA is used as an additive to lower the melting temperature of energetic materials in the synthesis of insensitive explosives. Although the biotransformation of MNA under anaerobic condition has been reported, its aerobic microbial degradation has not been documented yet. A soil microcosms study showed the efficient aerobic degradation of MNA by the inhabitant soil microorganisms. An aerobic bacterium, Pseudomonas sp. strain FK357, able to utilize MNA as the sole carbon, nitrogen, and energy source, was isolated from soil microcosms. HPLC and GC-MS analysis of the samples obtained from growth and resting cell studies showed the formation of 4-nitroaniline (4-NA, 4-aminophenol (4-AP, and 1, 2, 4-benzenetriol (BT as major metabolic intermediates in the MNA degradation pathway. Enzymatic assay carried out on cell-free lysates of MNA grown cells confirmed N-demethylation reaction is the first step of MNA degradation with the formation of 4-NA and formaldehyde products. Flavin-dependent transformation of 4-NA to 4-AP in cell extracts demonstrated that the second step of MNA degradation is a monooxygenation. Furthermore, conversion of 4-AP to BT by MNA grown cells indicates the involvement of oxidative deamination (release of NH2 substituent reaction in third step of MNA degradation. Subsequent degradation of BT occurs by the action of benzenetriol 1, 2-dioxygenase as reported for the degradation of 4-nitrophenol. This is the first report on aerobic degradation of MNA by a single bacterium along with elucidation of metabolic pathway.

  2. Artificial neural networks environmental forecasting in comparison with multiple linear regression technique: From heavy metals to organic micropollutants screening in agricultural soils

    Science.gov (United States)

    Bonelli, Maria Grazia; Ferrini, Mauro; Manni, Andrea

    2016-12-01

    The assessment of metals and organic micropollutants contamination in agricultural soils is a difficult challenge due to the extensive area used to collect and analyze a very large number of samples. With Dioxins and dioxin-like PCBs measurement methods and subsequent the treatment of data, the European Community advises the develop low-cost and fast methods allowing routing analysis of a great number of samples, providing rapid measurement of these compounds in the environment, feeds and food. The aim of the present work has been to find a method suitable to describe the relations occurring between organic and inorganic contaminants and use the value of the latter in order to forecast the former. In practice, the use of a metal portable soil analyzer coupled with an efficient statistical procedure enables the required objective to be achieved. Compared to Multiple Linear Regression, the Artificial Neural Networks technique has shown to be an excellent forecasting method, though there is no linear correlation between the variables to be analyzed.

  3. Fate and effect of imidacloprid on vermicompost-amended soils under dissimilar conditions: Risk for soil functions, structure, and bacterial abundance.

    Science.gov (United States)

    Castillo Diaz, Jean Manuel; Martin-Laurent, Fabrice; Beguet, Jérèmie; Nogales, Rogelio; Romero, Esperanza

    2017-02-01

    The fate and impact of pesticide on soil depend partly on the agricultural practices, such as prior treatment with pesticide and/or organic amendments. As a means of determining how the previous soil conditions can affect the fate of imidacloprid (IMI) and its effect on soil functions, experiments were made with soil samples, double-amended or not with either vine-shoot (W) or olive cake (O) vermicompost or contaminated or not with IMI. These soil samples, incubated for 3months, were placed in two microcosms (M1 with the pre-amended soils and M2 with the pre-exposed soils), treated with IMI and amended with vermicomposts and then incubated for 3months. The IMI distribution on soil fractions, sorption processes, dissipation kinetics, and biochemical as well as genetic structure and bacterial abundance were determined to assess the fate and impact of IMI on the soil. The addition of W vermicompost to the soil reduced the IMI availability. The dissipation kinetic in soils from M1 and M2 followed, respectively, a single first-order and a double first-order in parallel models. The lowest IMI persistence corresponded to the soil from M2 amended with O-vermicompost with DT50 and DT90 values of 67d and 265d, while in the other soils 90% dissipation required >512d. The vermicomposts-amended contaminated soils increased the dehydrogenase activity by 2- and 4-fold respect the control soils. However, the urease activity decreased due to the IMI influence. The changes in the bacterial community in the contaminated soil amended with O-vermicompost during incubation were correlated with the dissipation rate constant of IMI, suggesting a better tolerance of microorganisms to IMI. Thus, in the soil contaminated with IMI, the amendment with the vermicompost from olive cake can mitigate the impact of this insecticide on soil functions and promote its depuration capability while minimizing environmental risks. Copyright © 2016 Elsevier B.V. All rights reserved.

  4. Cadmium and lead availability for rapeseed grown on an artificial ISO soil; Transferts de metaux dans les vegetaux et phytoremediation

    Energy Technology Data Exchange (ETDEWEB)

    Baryla, A.; Sahut, C. [CEA Cadarache, Dept. d' Entreposage et de Stockage des Dechets (DCC/DESD/SEP), 13 - Saint-Paul-lez-Durance (France)

    2000-07-01

    Accumulations of heavy metals in soils have become a major concern for food crop production. Of these metals, cadmium and lead are recognized as the most widespread elements, that are non-essential for plant growth. While the toxicity of these metals is often investigated on plants grown in nutrient solution, soil is a complex medium. Metals may be dissolved in the soil solution or chelated to carbonates, to oxides of iron or manganese, or to organic matter. This chemical state of the metal is important because it determines the availability of the metal for the crop. Yet its study is complicated by numerous factors (soil pH, temperature, humidity..) which modify this chemical equilibrium. To standardize the experiments, an artificially reconstituted soil was prepared from clay, sand and peat according to standards ISO 11268-1 (May 1994). Metals (lead and cadmium) were added as nitrate salts. Plants used were rapeseeds. Seeds were sown on 20 cm diameter pots and placed in a controlled growth chamber. At harvest, roots, leaves and stems were separated, dried, and mineralized with concentrated nitric acid. Sequential analysis of the soil was carried out to assess the chemical behavior of the cadmium. The chemical speciation of cadmium is shown. The metal is essentially soluble in the soil and poorly complexed to the organic matter. This indicates that contamination is recent and derives from metal salts; cadmium complexation to organic matter appears only after years of soil evolution. The metal is then essentially available for plants but equilibrium is established between the different forms. Plant growth is shown. Cadmium has a strong effect on biomass production at 50 {mu}g / g in the soil. No toxic effect of lead was observed from 0 to 2000 {mu}g / g in the soil, probably because lead is strongly complexed to the soil and less toxic for plants. Metal concentrations in plants after two months of growth are shown in Figures 4 and 5. Plant cadmium content reached

  5. Monitoring of the vegetable garden open air spinach and soil radioactivity in Beijing during the Japan Fukushima nuclear accident

    International Nuclear Information System (INIS)

    Zhou Qiang; Xu Cuihua; Tuo Fei; Zhang Jing; Li Wenhong; Zhang Qing; Zhang Weijun; Zhang Jianfeng; Su Xu

    2012-01-01

    Objective: To detect artificial radionuclide content in the spinach and soil in open air vegetable garden in Beijing during Fukushima nuclear accident and to study the radioactive contamination characteristics of the samples. Methods: 6 spinach samples and 3 soil samples in open air vegetable garden were obtained through continuously sampling. High-purity germanium (HPGe) γ spectrometry was used to analyze activity concentrations of artificial radionuclide 131 I etc in these samples. Results: Artificial radionuclide 131 I was detected in the 6 open air spinach samples. Artificial radionuclide 137 Cs was detected in 3 vegetable garden soil samples, trace amount of 131 I was detected in 1 open-air surface soil sample alone. Conclusions: Following the Fukushima nuclear accident, spinach in Beijing's open-air vegetable garden was slightly polluted by artificial radionuclide 131 I, with the highest values of pollution appeared around April 4, 2011, but it could not cause harm to human health. (authors)

  6. Microcosm investigations of stormwater pond sediment toxicity to embryonic and larval amphibians: Variation in sensitivity among species

    Energy Technology Data Exchange (ETDEWEB)

    Snodgrass, Joel W. [Department of Biological Sciences, Towson University, 8000 York Road, Towson, MD 21252 (United States)], E-mail: jsnodgrass@towson.edu; Casey, Ryan E. [Department of Chemistry, Towson University, 8000 York Road, Towson, MD 21252 (United States); Joseph, Debra; Simon, Judith A. [Department of Biological Sciences, Towson University, 8000 York Road, Towson, MD 21252 (United States)

    2008-07-15

    Stormwater ponds have become common features of modern development and often represent significant amounts of open space in urbanized areas. Although stormwater ponds may provide habitat for wildlife, factors responsible for producing variation in wildlife use of ponds have received limited attention. To investigate the role of variation in species tolerances of pollutants in structuring pond-breeding amphibian assemblages, we exposed species tolerant (Bufo americanus) and not tolerant (Rana sylvatica) of urbanization to pond sediments in laboratory microcosms. Pond microcosms had elevated sediment metal levels and chloride water concentrations. Among R. sylvatica embryos, exposure to pond sediments resulted in 100% mortality. In contrast, B. americanus embryos and larvae experienced only sublethal effects (i.e., reduced size at metamorphosis) due to pond sediment exposure. Our results suggest variation in pollutant tolerance among early developmental stages of amphibians may act in concert with terrestrial habitat availability to structure amphibian assemblages associated with stormwater ponds. - Variation among species in sensitivity to pollutants can influence stormwater pond amphibian assemblages.

  7. Organic amendments for risk mitigation of organochlorine pesticide residues in old orchard soils

    Science.gov (United States)

    Centofantia, Tiziana; McConnell, Laura L.; Chaney, Rufus L.; Beyer, W. Nelson; Andradea, Natasha A.; Hapeman, Cathleen J.; Torrents, Alba; Nguyen, Anh; Anderson, Marya O.; Novak, J. M.; Jackson, Dana

    2015-01-01

    Performance of compost and biochar amendments for in situ risk mitigation of aged DDT, DDE and dieldrin residues in an old orchard soil was examined. The change in bioavailability of pesticide residues to Lumbricus terrestris L. relative to the unamended control soil was assessed using 4-L soil microcosms with and without plant cover in a 48-day experiment. The use of aged dairy manure compost and biosolids compost was found to be effective, especially in the planted treatments, at lowering the bioavailability factor (BAF) by 18–39%; however, BAF results for DDT in the unplanted soil treatments were unaffected or increased. The pine chip biochar utilized in this experiment was ineffective at lower the BAF of pesticides in the soil. The US EPA Soil Screening Level approach was used with our measured values. Addition of 10% of the aged dairy manure compost reduced the average hazard quotient values to below 1.0 for DDT + DDE and dieldrin. Results indicate this sustainable approach is appropriate to minimize risks to wildlife in areas of marginal organochlorine pesticide contamination. Application of this remediation approach has potential for use internationally in areas where historical pesticide contamination of soils remains a threat to wildlife populations.

  8. Survival, growth, and body residues of hyalella azteca (Saussure) exposed to fipronil contaminated sediments from non-vegetated and vegetated microcosms.

    Science.gov (United States)

    Kröger, Robert; Lizotte, Richard E; Moore, Matthew T

    2009-09-01

    We assessed chronic effects of fipronil and metabolite contaminated sediments from non-vegetated and Thallia dealbata vegetated wetland microcosms on Hyalella azteca during wet and dry exposures. Mean sediment concentrations (ng g(-1)) ranged from 0.72-1.26, 0.01-0.69, 0.07-0.23, and 0.49-7.87 for fipronil, fipronil-sulfide, fipronil-sulfone, and fipronil-desulfinyl, respectively. No significant differences in animal survival or growth were observed between non-vegetated and vegetated microcosms during wet or dry exposures. Mean animal body residue concentrations (ng g(-1)) ranged from 28.4-77.6, 0-30.7, and 8.3-43.8 for fipronil, fipronil-sulfide, and fipronil-sulfone. Fipronil-desulfinyl was not detected in any animal samples.

  9. Acetate repression of methane oxidation by supplemental Methylocella silvestris in a peat soil microcosm.

    Science.gov (United States)

    Rahman, M Tanvir; Crombie, Andrew; Moussard, Hélène; Chen, Yin; Murrell, J Colin

    2011-06-01

    Methylocella spp. are facultative methanotrophs that grow on methane and multicarbon substrates, such as acetate. Acetate represses transcription of methane monooxygenase of Methylocella silvestris in laboratory culture. DNA stable-isotope probing (DNA-SIP) using (13)C-methane and (12)C-acetate, carried out with Methylocella-spiked peat soil, showed that acetate also repressed methane oxidation by Methylocella in environmental samples.

  10. Priming Effect Induced by the Use of Different Fertilizers on Soil Functional Diversity

    Directory of Open Access Journals (Sweden)

    Bogdan Mihai ONICA

    2017-11-01

    Full Text Available Agricultural practices, such as the use of fertilizers, can change the structure and function of soil microbial community. Monitoring and assessing the soil microbiota and its dynamics related to different factors can be a powerful tool for understanding basic and applied ecological contexts. The main objective of this paper was to assess the changes of carbon turnover rate and the microbial metabolic activity, when different types of fertilizers were used, process called priming effect. A microcosm experiment was designed and performed under controlled temperature and humidity and the soil samples were analyzed using the MicroResp technique. Results show that the integration in soil of different carbon sources, such as green manure, can lead to a positive priming effect and integration of mineral fertilizers can lead to negative priming effect. The carbon sources with the highest respiratory activity were α-ketoglutaric acid, malic acid, oxalic acid, citric acid, while the lowest respiratory activity was obtained in case of arginine.

  11. Microcosm investigation of growth and phytoremediation potential of Azolla japonica along nitrogen gradients.

    Science.gov (United States)

    Park, Hun; Song, Uhram

    2017-10-03

    Although Azolla species are among the most promising plants for use in phytoremediation, more studies on their growth and nitrogen (N) uptake along the N gradients of growing media are required. In this study, N concentration-dependent growth in growing media and phosphorus (P) and N accumulation by Azolla japonica were studied by estimating direct N uptake from media by molybdenum-iron proteins. The doubling time of A. japonica was less than a week, regardless of the N concentration (0, 5, and 25 mg N/L) present in the growth media, indicating that this plant is suitable for remediation. Plants showed a high uptake of P, probably via plant-bacteria symbiosis, indicating their potential for effective P remediation. A. japonica also showed more than 4% N content regardless of the treatment and accumulated more than 40 mg of N per microcosm in 3 weeks. iron and molybdenum levels in plants were strongly associated with N fixation, and N uptake from media was estimated to be more than 25 mg per microcosm in 3 weeks, indicating that A. japonica has N remediation potential. As A. japonica is a rapidly growing plant, capable of efficient P and N remediation, it has great potential for use in phytoremediation of nutrient-enriched waters such as agricultural or urban wastewater and eutrophicated aquatic ecosystems.

  12. Bioconcentration of artificial radionuclides in edible mushrooms: in situ and in vitro studies

    Energy Technology Data Exchange (ETDEWEB)

    Dementyev, Dmitry V.; Manukovsky, Nikolai S.; Bolsunovsky, Alexander Ya.; Alexandrova, Yuliyana V. [Institute of Biophysics, Siberian Branch of the Russian Academy of Sciences, 660036, Krasnoyarsk (Russian Federation)

    2014-07-01

    Some areas of the Yenisei River basin are affected by the operation of the Mining-and-Chemical Combine (MCC), producing weapons-grade plutonium. Flood plain soils of the Yenisei contain a wide range of artificial radionuclides, including transuranium elements, which can be accumulated by living organisms. Concentrations of artificial radionuclides and heavy metals accumulated by mushrooms may be several orders of magnitude higher than those accumulated by plants, and, thus, mushrooms may be used as bio-concentrators of radionuclides and heavy metals for bioremediation of contaminated areas. The purposes of this study were to investigate 1) species specificity of accumulation of artificial radionuclides by edible mushrooms in radioactively contaminated areas of the Yenisei River flood plain and 2) accumulation rates of artificial radionuclides, including transuranium elements, in mushrooms under laboratory conditions. Species specificity of accumulation of artificial radionuclides and uranium by mushrooms was analyzed for 12 species of edible mushrooms. The study was performed at the sites affected by MCC operation, which were divided into two groups: 1) the sites only affected by aerosol-bound radionuclides and 2) the sites that also received waterborne radionuclides. Field studies showed great interspecific variations in Cs-137 accumulation by mushrooms. Activity concentrations of Cs-137 in bioindicator species Suillus granulatus and S. Luteus reached 10 kBq/kg dry weight. S. granulatus and S. luteus are concentrators of Cs-137, as suggested by the analysis of concentration factors (CFs), which reached 0.7-16 for these mushroom species. The CF of U-238 in fruiting bodies of the mushrooms was no greater than 0.11. Yenisei flood plain soils contain a wide range of transuranium elements, which can accumulate in environmental objects. Laboratory experiments on accumulation of Am-241 from solution by mycelium and Am-241 accumulation by fruiting bodies of mushrooms

  13. Fate and persistence of a pathogenic NDM-1-positive Escherichia coli strain in anaerobic and aerobic sludge microcosms

    KAUST Repository

    Mantilla-Calderon, David

    2017-04-15

    The presence of emerging biological pollutants in treated wastewater effluents has gained attention due to increased interest in water reuse. To evaluate the effectiveness of the removal of such contaminants by the conventional wastewater treatment process, the fate and decay kinetics of NDM-1-positive Escherichia coli strain PI7 and its plasmid-encoded antibiotic resistance genes (ARGs) were assessed in microcosms of anaerobic and aerobic sludge. Results showed that E. coli PI7 decayed at a significantly slower rate under anaerobic conditions. Approximate half-lives were 32.4 ± 1.4 h and 5.9 ± 0.9 h in the anaerobic and aerobic microcosms, respectively. In the aerobic microcosms, after 72 h of operation, E. coli PI7 remained detectable but no further decay was observed. Instead, 1 in every 10000 E. coli cells was identified to be recalcitrant to decay and persist indefinitely in the sludge. ARGs associated with the E. coli PI7 were detected to have transferred to other native microorganisms in the sludge, or are released to the liquid fraction upon host decay. Extracellular DNA quickly degraded in the liquid fraction of the aerobic sludge. In contrast, no DNA decay was detected in the anaerobic sludge water matrix throughout the 24 h sampling period. This study suggests an increased likelihood of environmental dispersion of ARGs associated with anaerobically treated wastewater effluents and highlights the potential importance of persister cells in the dissemination of E. coli in the environment during reuse events of treated wastewater.IMPORTANCE This study examines the decay kinetics of a pathogenic and antibiotic resistant strain of Escherichia coli in microcosms simulating biological treatment units of aerobic and anaerobic sludge. The results of this study points at a significantly prolonged persistence of the E. coli and the associated antibiotic resistance gene in the anaerobic sludge. However, horizontal transfer of the plasmid encoding the antibiotic

  14. Fate and Persistence of a Pathogenic NDM-1-Positive Escherichia coli Strain in Anaerobic and Aerobic Sludge Microcosms.

    Science.gov (United States)

    Mantilla-Calderon, David; Hong, Pei-Ying

    2017-07-01

    The presence of emerging biological pollutants in treated wastewater effluents has gained attention due to increased interest in water reuse. To evaluate the effectiveness of the removal of such contaminants by the conventional wastewater treatment process, the fate and decay kinetics of NDM-1-positive Escherichia coli strain PI7 and its plasmid-encoded antibiotic resistance genes (ARGs) were assessed in microcosms of anaerobic and aerobic sludge. Results showed that E. coli PI7 decayed at a significantly lower rate under anaerobic conditions. Approximate half-lives were 32.4 ± 1.4 h and 5.9 ± 0.9 h in the anaerobic and aerobic microcosms, respectively. In the aerobic microcosms, after 72 h of operation, E. coli PI7 remained detectable, but no further decay was observed. Instead, 1 in every 10,000 E. coli cells was identified to be recalcitrant to decay and persist indefinitely in the sludge. ARGs associated with the E. coli PI7 strain were detected to have transferred to other native microorganisms in the sludge or were released to the liquid fraction upon host decay. Extracellular DNA quickly degraded in the liquid fraction of the aerobic sludge. In contrast, no DNA decay was detected in the anaerobic sludge water matrix throughout the 24-h sampling period. This study suggests an increased likelihood of environmental dispersion of ARGs associated with anaerobically treated wastewater effluents and highlights the potential importance of persister cells in the dissemination of E. coli in the environment during reuse events of treated wastewater. IMPORTANCE This study examines the decay kinetics of a pathogenic and antibiotic resistant strain of Escherichia coli in microcosms simulating biological treatment units of aerobic and anaerobic sludge. The results of this study point at a significantly prolonged persistence of the E. coli and the associated antibiotic resistance gene in the anaerobic sludge. However, horizontal transfer of the plasmid encoding the

  15. Effects of a mixture of tetracyclines to Lemna gibba and Myriophyllum sibiricum evaluated in aquatic microcosms

    Energy Technology Data Exchange (ETDEWEB)

    Brain, Richard A [Centre for Toxicology, Department of Environmental Biology, University of Guelph, Guelph, Ontario, N1G 2W1 (Canada); Wilson, Christian J [Centre for Toxicology, Department of Environmental Biology, University of Guelph, Guelph, Ontario, N1G 2W1 (Canada); Johnson, David J [Centre for Toxicology, Department of Environmental Biology, University of Guelph, Guelph, Ontario, N1G 2W1 (Canada); Sanderson, Hans [Centre for Toxicology, Department of Environmental Biology, University of Guelph, Guelph, Ontario, N1G 2W1 (Canada); Bestari, Ketut [Centre for Toxicology, Department of Environmental Biology, University of Guelph, Guelph, Ontario, N1G 2W1 (Canada); Hanson, Mark L [Centre for Toxicology, Department of Environmental Biology, University of Guelph, Guelph, Ontario, N1G 2W1 (Canada); Sibley, Paul K [Centre for Toxicology, Department of Environmental Biology, University of Guelph, Guelph, Ontario, N1G 2W1 (Canada); Solomon, Keith R [Centre for Toxicology, Department of Environmental Biology, University of Guelph, Guelph, Ontario, N1G 2W1 (Canada)

    2005-12-15

    The impact of a mixture of oxytetracycline, chlortetracycline, tetracycline and doxycycline on Myriophyllum sibiricum and Lemna gibba was investigated using fifteen 12,000-L microcosms (k = 5, n = 3). Significant concentration-response relationships were only found for M. sibiricum, where dry mass was 69, 47, 30, and 7% of controls at respective treatment concentrations of 0.080, 0.218, 0.668, and 2.289 {mu}mol/L. Somatic endpoints were strongly and negatively correlated with percent light transmission, except plant length, which was positively correlated. Treated microcosms experienced a reduction in the percent of surface irradiance penetrating the water column as high as 99.8% at a depth of 70 cm, relative to controls. Position relative to the water column was likely responsible for the differential effects observed between floating (L. gibba) and submerged (M. sibiricum) species of macrophytes. A hazard quotient assessment of the lowest EC{sub 10} value indicated significant risk, exceeding the critical HQ value, but not the lowest EC{sub 25} value. - Mixtures of tetracycline antibiotics pose a risk to submerged but not floating aquatic plants.

  16. Effects of a mixture of tetracyclines to Lemna gibba and Myriophyllum sibiricum evaluated in aquatic microcosms

    International Nuclear Information System (INIS)

    Brain, Richard A.; Wilson, Christian J.; Johnson, David J.; Sanderson, Hans; Bestari, Ketut; Hanson, Mark L.; Sibley, Paul K.; Solomon, Keith R.

    2005-01-01

    The impact of a mixture of oxytetracycline, chlortetracycline, tetracycline and doxycycline on Myriophyllum sibiricum and Lemna gibba was investigated using fifteen 12,000-L microcosms (k = 5, n = 3). Significant concentration-response relationships were only found for M. sibiricum, where dry mass was 69, 47, 30, and 7% of controls at respective treatment concentrations of 0.080, 0.218, 0.668, and 2.289 μmol/L. Somatic endpoints were strongly and negatively correlated with percent light transmission, except plant length, which was positively correlated. Treated microcosms experienced a reduction in the percent of surface irradiance penetrating the water column as high as 99.8% at a depth of 70 cm, relative to controls. Position relative to the water column was likely responsible for the differential effects observed between floating (L. gibba) and submerged (M. sibiricum) species of macrophytes. A hazard quotient assessment of the lowest EC 10 value indicated significant risk, exceeding the critical HQ value, but not the lowest EC 25 value. - Mixtures of tetracycline antibiotics pose a risk to submerged but not floating aquatic plants

  17. Influence of red mud on soil microbial communities: Application and comprehensive evaluation of the Biolog EcoPlate approach as a tool in soil microbiological studies.

    Science.gov (United States)

    Feigl, Viktória; Ujaczki, Éva; Vaszita, Emese; Molnár, Mónika

    2017-10-01

    Red mud can be applied as soil ameliorant to acidic, sandy and micronutrient deficient soils. There are still knowledge gaps regarding the effects of red mud on the soil microbial community. The Biolog EcoPlate technique is a promising tool for community level physiological profiling. This study presents a detailed evaluation of Biolog EcoPlate data from two case studies. In experiment "A" red mud from Ajka (Hungary) was mixed into acidic sandy soil in soil microcosms at 5-50 w/w%. In experiement "B" red mud soil mixture was mixed into low quality subsoil in a field experiment at 5-50 w/w%. According to average well color development, substrate average well color development and substrate richness 5-20% red mud increased the microbial activity of the acidic sandy soil over the short term, but the effect did not last for 10months. Shannon diversity index showed that red mud at up to 20% did not change microbial diversity over the short term, but the diversity decreased by the 10th month. 30-50% red mud had deteriorating effect on the soil microflora. 5-20% red mud soil mixture in the low quality subsoil had a long lasting enhancing effect on the microbial community based on all Biolog EcoPlate parameters. However, 50% red mud soil mixture caused a decrease in diversity and substrate richness. With the Biolog EcoPlate we were able to monitor the changes of the microbial community in red mud affected soils and to assess the amount of red mud and red mud soil mixture applicable for soil treatment in these cases. Copyright © 2017 Elsevier B.V. All rights reserved.

  18. The use of terrestrial and aquatic microcosms and mesocosms for the ecological risk assessment of veterinary medicinal products

    NARCIS (Netherlands)

    Brink, van den P.J.; Tarzona, J.V.; Solomon, K.R.; Knacker, T.; Brink, van den N.W.; Brock, T.C.M.; Hoogland, J.P.

    2005-01-01

    In this paper, we investigate the applicability of experimental model ecosystems (microcosms and mesocosms) for the ecological risk assessment of veterinary medicinal products (VMPs). VMPs are used in large quantities, but the assessment of associated risks to the environment is limited, although

  19. Application of Ultrasonic for Decontamination of Contaminated Soil - 13142

    Energy Technology Data Exchange (ETDEWEB)

    Vasilyev, A.P. [JRC ' NIKIET' , Moscow (Russian Federation); Lebedev, N.M. [LLC ' Aleksandra-Plus' , Vologda (Russian Federation); Savkin, A.E. [SUE SIA ' Radon' , Moscow (Russian Federation)

    2013-07-01

    The trials of soil decontamination were carried out with the help of a pilot ultrasonic installation in different modes. The installation included a decontamination bath equipped with ultrasonic sources, a precipitator for solution purification from small particles (less than 80 micrometer), sorption filter for solution purification from radionuclides washing out from soil, a tank for decontamination solution, a pump for decontamination solution supply. The trials were carried out on artificially contaminated sand with specific activity of 4.5 10{sup 5} Bk/kg and really contaminated soil from Russian Scientific Center 'Kurchatovsky Institute' (RSC'KI') with specific activity of 2.9 10{sup 4} Bk/kg. It was established that application of ultrasonic intensify the process of soil reagent decontamination and increase its efficiency. The decontamination factor for the artificially contaminated soil was ∼200 and for soil from RSC'KI' ∼30. The flow-sheet diagram has been developed for the new installation as well as determined the main technological characteristics of the equipment. (authors)

  20. Chlorodifluoroacetic acid fate and toxicity to the macrophytes Lemna gibba, Myriophyllum spicatum, and Myriophyllum sibiricum in aquatic microcosms.

    Science.gov (United States)

    Hanson, M L; Sibley, P K; Mabury, S A; Muir, D C; Solomon, K R

    2001-12-01

    Chlorodifluoroacetic acid (CDFA) is a novel haloacetic acid (HAA) and has been recently documented in aquatic systems. It is a suspected degradation product of the refrigerants 1,1,2-trichloro-1,1-difluoroethane (CFC-113) and 1-chloro-1,1-difluoroethane (HCFC-142b). Haloacetic acids can be phytotoxic, putatively acting through inhibition of the citric acid cycle. Replicate (n = 3) 12,000-L model aquatic ecosystems (microcosms) were dosed once at 0.5, 1, 5, and 20 mg/L of neutralized CDFA. Three microcosms served as controls. Each microcosm was stocked with eight individual apical shoots of both Myriophyllum spicatum and Myriophyllum sibiricum and sampled at regular intervals over a 42-d exposure period. The plants were assessed for the somatic endpoints of plant length, root growth, node number, and wet and dry mass and the biochemical endpoints of chlorophyll-a/b and carotenoid content as well as citric acid levels. The duckweed Lemna gibba was also introduced into these systems and monitored over a period of 14 d for wet/dry mass, plant/frond number, chlorophyll content, and growth rate. Concentrations of CDFA remained constant in the water column over the course of the fate investigation (241 d), indicating that this compound undergoes little, if any, degradation in aquatic systems. Results showed few statistically significant differences from controls for all three plant species with exposure to CDFA but no biologically relevant impacts. Overall, CDFA does not appear to pose any risk to these aquatic macrophytes at current environmental concentrations.

  1. Influence of Aroclor 1242 Concentration on Polychlorinated Biphenyl Biotransformations in Hudson River Test Tube Microcosms

    Science.gov (United States)

    Fish, K. M.

    1996-01-01

    When 93.3 to 933 (mu)mol of Aroclor 1242 per kg was added to Hudson River sediment test tube microcosms, the rates of polychlorinated biphenyl biotransformations increased with increasing Aroclor 1242 concentration after a 4- to 8-week acclimation period. In contrast, when 37.3 (mu)mol of Aroclor 1242 per kg was added, polychlorinated biphenyl biotransformations occurred at slow constant rates. PMID:16535387

  2. Nutrient leaching when soil is part of plant growth media

    Science.gov (United States)

    Soils can serve as sorbents for phosphorus (P) within plant growth media, negating the need for artificial sorbents. The purpose of this study was to compare soils with different properties, as part of plant growth media, for their effect on nutrient levels in effluent. Four soils were mixed with sa...

  3. Impact of Ag and Al2O3 nanoparticles on soil organisms: In vitro and soil experiments

    International Nuclear Information System (INIS)

    Fajardo, C.; Saccà, M.L.; Costa, G.; Nande, M.; Martin, M.

    2014-01-01

    In vitro analyses were conducted to assess the impact of Al 2 O 3 and Ag nanoparticles on two common soil bacteria, Bacillus cereus and Pseudomonas stutzeri. Al 2 O 3 nanoparticles did not show significant toxicity at any dose or time assayed, whereas exposure to 5 mg L −1 Ag nanoparticles for 48 h caused bactericidal effects. Moreover, alterations at the morphological level were observed by transmission electron microscopy (TEM); Ag but not Al 2 O 3 nanoparticles evoked the entrance of B. cereus cells in an early sporulation stage and both nanoparticles penetrated P. stutzeri cells. At the molecular level, a dramatic increase (8.2-fold) in katB gene expression was found in P. stutzeri following Al 2 O 3 nanoparticles exposure, indicative of an oxidative stress-defence system enhancement in this bacterium. In the microcosm experiment, using two different natural soils, Al 2 O 3 or Ag nanoparticles did not affect the Caenorhabditis elegans toxicity endpoints growth, survival, or reproduction. However, differences in microbial phylogenetic compositions were detected by fluorescence in situ hybridization (FISH). The use of katB- and pykA-based sequences showed that the microbial transcriptional response to nanoparticle exposure decreased, suggesting a decrease in cellular activity. These changes were attributable to both the nanoparticles treatment and soil characteristics, highlighting the importance of considering the soil matrix on a case by case basis. - Highlights: • Al 2 O 3 or Ag NPs impact on bacteria was assessed at phenotypic and molecular level. • katB gene involved in oxidative-stress response was overexpressed in P. stutzeri following Al 2 O 3 NPs exposure. • A decrease in bacterial transcriptional response was detected in NPs-treated soils. • A soil-dependent response to specific NP treatment was observed. • In NPs-treated soils no acute toxic effects on C. elegans were found

  4. Site-specific variability in BTEX biodegradation under denitrifying conditions

    International Nuclear Information System (INIS)

    Kao, C.M.; Borden, R.C.

    1997-01-01

    Laboratory microcosm experiments were conducted to evaluate the feasibility of benzene, toluene, ethylbenzene, m-xylene, and o-xylene (BTEX) biodegradation under denitrifying conditions. Nine different sources of inocula, including contaminated and uncontaminated soil cores from four different sites and activated sludge, were used to establish microcosms. BTEX was not degraded under denitrifying conditions in microcosms inoculated with aquifer material from Rocky Point and Traverse City. However, rapid depletion of glucose under denitrifying conditions was observed in microcosms containing Rocky Point aquifer material. TEX degradation was observed in microcosms containing Rocky Point aquifer material. TEX degradation was observed in microcosms containing aquifer material from Fort Bragg and Sleeping Bear Dunes and sewage sludge. Benzene was recalcitrant in all microcosms tested. The degradation of o-xylene ceased after toluene, ethylbenzene, and m-xylene were depleted in the Fort Bragg and sludge microcosms, but o-xylene continued to degrade in microcosms with contaminated Sleeping Bear Dunes soil. The most probable number (MPN) of denitrifiers in these nine different inocula were measured using a microtiter technique. There was no correlation between the MPN of denitrifiers and the TEX degradation rate under denitrifying conditions. Experimental results indicate that the degradation sequence and TEX degradation rate under denitrifying conditions may differ among sites. Results also indicate that denitrification alone may not be a suitable bioremediation technology for gasoline-contaminated aquifers because of the inability of denitrifiers to degrade benzene

  5. Biodegradation of weathered polystyrene films in seawater microcosms.

    Science.gov (United States)

    Syranidou, Evdokia; Karkanorachaki, Katerina; Amorotti, Filippo; Franchini, Martina; Repouskou, Eftychia; Kaliva, Maria; Vamvakaki, Maria; Kolvenbach, Boris; Fava, Fabio; Corvini, Philippe F-X; Kalogerakis, Nicolas

    2017-12-21

    A microcosm experiment was conducted at two phases in order to investigate the ability of indigenous consortia alone or bioaugmented to degrade weathered polystyrene (PS) films under simulated marine conditions. Viable populations were developed on PS surfaces in a time dependent way towards convergent biofilm communities, enriched with hydrocarbon and xenobiotics degradation genes. Members of Alphaproteobacteria and Gammaproteobacteria were highly enriched in the acclimated plastic associated assemblages while the abundance of plastic associated genera was significantly increased in the acclimated indigenous communities. Both tailored consortia efficiently reduced the weight of PS films. Concerning the molecular weight distribution, a decrease in the number-average molecular weight of films subjected to microbial treatment was observed. Moreover, alteration in the intensity of functional groups was noticed with Fourier transform infrared spectrophotometry (FTIR) along with signs of bio-erosion on the PS surface. The results suggest that acclimated marine populations are capable of degrading weathered PS pieces.

  6. Enhanced biodegradation of naphthalene in MGP aquifer microcosms

    International Nuclear Information System (INIS)

    Durant, N.D.; Jonkers, C.A.A.; Wilson, L.P.; Bouwer, E.J.

    1995-01-01

    Subsurface sediments collected from a former manufactured-gas-plant (MGP) site contain bacteria capable of mineralizing significant amounts of 14 C-naphthalene in aerobic (8.5 mg/L O 2 ) sediment-water microcosms incubated at 10 C. The extent to which electron-acceptor (O 2 and NO 3 - ) and nutrient (NO 3 - and PO 4 3- ) amendments enhanced naphthalene mineralization in these sediments varied considerably. Oxygen-amended conditions (21 mg/L O 2 ) resulted in the greatest rate and extent of biodegradation for most sediments. Data suggested, however, that some MGP-site sediments prefer mixed NO 3 - /O 2 electron-acceptor conditions for naphthalene biodegradation. Significant denitrification was observed in the nitrate-amended sediments exhibiting naphthalene mineralization. In most cases, PO 4 3- complexed with the sediments either had no effect or inhibited naphthalene mineralization. Sediments unable to mineralize naphthalene over the 6-week incubation period were characterized by low pH ( 4 2- (>500 mg/L) conditions

  7. Biodegradation of organophosphorus pesticides by soil bacteria

    Science.gov (United States)

    de Pasquale, C.; Fodale, R.; Lo Piccolo, L.; Palazzolo, E.; Alonzo, G.; Quatrini, P.

    2009-04-01

    A number of studies in the 1980s and 1990s showed that crop-protection products, applied to drained fields, could move downwards through the soil profile and to the groundwater. Organophosphorus insecticides (OPs) are used all over the world for crop protection, for other agricultural practices such as sheep dipping and, in aquaculture, for the control of sea lice. Ops besides showing a specific neurotoxicity and have also been related to various modern diseases, including Creutzfeldt-Jakob (CJD) and the Gulf War syndrome. Although OPs are less persistent than Organoclorine pesticides (OCs), they still constitute an environmental risks thus increasing the social concern about their levels in soils, surface waters, and ground waters. Degradation of OPs by microorganisms has been assessed for a few bacterial strains. In the present study the OPs degrading potential of indigenous soil microorganisms was investigated. Using enrichment cultures in which parathion was the only C and energy sources many bacterial strains were isolated from OPs contaminated and pristine agricultural soils characterized by different physico-chemical properties. More than 40 potential OPs degraders were isolated and grouped in operational taxonomic units (OTU) using analysis of polymorphism showed by the ribosomal internal transcribed spacer (ITS). Partial sequencing of 16S rRNA gene of representative isolates of each OTU revealed that most of them belong to Proteobacteria and Actinobacteria. All the analyzed soils showed the presence of putative OPs degraders: the highest diversity was found in organic cultivated soils, the lowest in chemically cultivated soils. Degradation of different OPs, characterized by different physical and chemical properties, was obtained by different selected representative strains using SPME GC-MS analysis on water and soil microcosms. The results showed that, after the incubation period, the amount of pesticide residues were in the range 20-80%. Some of the

  8. Liquefaction Microzonation of Babol City Using Artificial Neural Network

    DEFF Research Database (Denmark)

    Farrokhzad, F.; Choobbasti, A.J.; Barari, Amin

    2012-01-01

    that will be less susceptible to damage during earthquakes. The scope of present study is to prepare the liquefaction microzonation map for the Babol city based on Seed and Idriss (1983) method using artificial neural network. Artificial neural network (ANN) is one of the artificial intelligence (AI) approaches...... microzonation map is produced for research area. Based on the obtained results, it can be stated that the trained neural network is capable in prediction of liquefaction potential with an acceptable level of confidence. At the end, zoning of the city is carried out based on the prediction of liquefaction...... that can be classified as machine learning. Simplified methods have been practiced by researchers to assess nonlinear liquefaction potential of soil. In order to address the collective knowledge built-up in conventional liquefaction engineering, an alternative general regression neural network model...

  9. Copper pollution decreases the resistance of soil microbial community to subsequent dry-rewetting disturbance.

    Science.gov (United States)

    Li, Jing; Wang, Jun-Tao; Hu, Hang-Wei; Ma, Yi-Bing; Zhang, Li-Mei; He, Ji-Zheng

    2016-01-01

    Dry-rewetting (DW) disturbance frequently occurs in soils due to rainfall and irrigation, and the frequency of DW cycles might exert significant influences on soil microbial communities and their mediated functions. However, how microorganisms respond to DW alternations in soils with a history of heavy metal pollution remains largely unknown. Here, soil laboratory microcosms were constructed to explore the impacts of ten DW cycles on the soil microbial communities in two contrasting soils (fluvo-aquic soil and red soil) under three copper concentrations (zero, medium and high). Results showed that the fluctuations of substrate induced respiration (SIR) decreased with repeated cycles of DW alternation. Furthermore, the resistance values of substrate induced respiration (RS-SIR) were highest in non-copper-stressed (zero) soils. Structural equation model (SEM) analysis ascertained that the shifts of bacterial communities determined the changes of RS-SIR in both soils. The rate of bacterial community variance was significantly lower in non-copper-stressed soil compared to the other two copper-stressed (medium and high) soils, which might lead to the higher RS-SIR in the fluvo-aquic soil. As for the red soil, the substantial increase of the dominant group WPS-2 after DW disturbance might result in the low RS-SIR in the high copper-stressed soil. Moreover, in both soils, the bacterial diversity was highest in non-copper-stressed soils. Our results revealed that initial copper stress could decrease the resistance of soil microbial community structure and function to subsequent DW disturbance. Copyright © 2015. Published by Elsevier B.V.

  10. Species-specific effects of soil fauna on fungal foraging and decomposition.

    Science.gov (United States)

    Crowther, Thomas W; Boddy, Lynne; Jones, T Hefin

    2011-10-01

    Decomposer fungi are primary decomposing agents in terrestrial soils. Their mycelial networks play an important role in nutrient mineralisation and distribution, but are also nutritious resources for various soil invertebrates. Global climate change is predicted to alter the diversity and community composition of these soil fauna. To understand whether changes in invertebrate species diversity are likely to affect fungal-mediated decomposition, this study compared the grazing potentials of different invertebrate taxa and functional groups. Specifically, the grazing impacts of seven invertebrate taxa on the growth and spatial distribution of six basidiomycete fungi growing from beech wood blocks in soil microcosms were explored. Wood decay rates by fungi were also compared. The consequences of grazing were both taxon- and species-specific. Generally, macro-invertebrates caused the greatest damage, while meso- and micro-invertebrates often stimulated mycelial growth. Invertebrate size, preferences and population dynamics are likely to influence grazing potentials. Effects of grazing varied between fungi, with mycelial morphology and biochemistry possibly influencing susceptibility. Heavy grazing indirectly increased fungal-mediated wood decomposition. Changes in invertebrate community composition are predicted to have consequences for fungal growth, activity and community structure in woodland soils. Abiotic climate change factors including CO(2) and temperature affect mycelial productivity directly, but the indirect effects, mediated through changes in the soil invertebrate community, may be equally important in controlling ecosystem functioning.

  11. Nanoscale zerovalent iron alters soil bacterial community structure and inhibits chloroaromatic biodegradation potential in Aroclor 1242-contaminated soil

    International Nuclear Information System (INIS)

    Tilston, Emma L.; Collins, Chris D.; Mitchell, Geoffrey R.; Princivalle, Jessica; Shaw, Liz J.

    2013-01-01

    Nanoscale zerovalent iron (nZVI) has potential for the remediation of organochlorine-contaminated environments. Environmental safety concerns associated with in situ deployment of nZVI include potential negative impacts on indigenous microbes whose biodegradative functions could contribute to contaminant remediation. With respect to a two-step polychlorinated biphenyl remediation scenario comprising nZVI dechlorination followed by aerobic biodegradation, we examined the effect of polyacrylic acid (PAA)-coated nZVI (mean diameter = 12.5 nm) applied at 10 g nZVI kg −1 to Aroclor-1242 contaminated and uncontaminated soil over 28 days. nZVI had a limited effect on Aroclor congener profiles, but, either directly or indirectly via changes to soil physico-chemical conditions (pH, Eh), nZVI addition caused perturbation to soil bacterial community composition, and reduced the activity of chloroaromatic mineralizing microorganisms. We conclude that nZVI addition has the potential to inhibit microbial functions that could be important for PCB remediation strategies combining nZVI treatment and biodegradation. Highlights: ► Impact of nano-sized zerovalent iron on microbes was investigated in soil microcosms. ► Zerovalent iron had short-lived effects on redox potential and Aroclor dechlorination. ► Microbial populations also showed short-lived perturbations in their size. ► The activity of chloroaromatic degrading microbes did not recover within 28 days. ► Zerovalent iron application inhibits ensuing PCB bioremediative microbial functions. - nZVI inhibits microbial functions of potential importance for remediation strategies combining nZVI treatment and biodegradation.

  12. Changes in Soil Fungal Community Structure with Increasing Disturbance Frequency.

    Science.gov (United States)

    Cho, Hyunjun; Kim, Mincheol; Tripathi, Binu; Adams, Jonathan

    2017-07-01

    Although disturbance is thought to be important in many ecological processes, responses of fungal communities to soil disturbance have been little studied experimentally. We subjected a soil microcosm to physical disturbance, at a range of frequencies designed to simulate ecological disturbance events. We analyzed the fungal community structure using Illumina HiSeq sequencing of the ITS1 region. Fungal diversity was found to decline with the increasing disturbance frequencies, with no sign of the "humpback" pattern found in many studies of larger sedentary organisms. There is thus no evidence of an effect of release from competition resulting from moderate disturbance-which suggests that competition and niche overlap may not be important in limiting soil fungal diversity. Changing disturbance frequency also led to consistent differences in community composition. There were clear differences in OTU-level composition, with different disturbance treatments each having distinct fungal communities. The functional profile of fungal groups (guilds) was changed by the level of disturbance frequency. These predictable differences in community composition suggest that soil fungi can possess different niches in relation to disturbance frequency, or time since last disturbance. Fungi appear to be most abundant relative to bacteria at intermediate disturbance frequencies, on the time scale we studied here.

  13. Decoupled responses of soil bacteria and their invertebrate consumer to warming, but not freeze-thaw cycles, in the Antarctic Dry Valleys.

    Science.gov (United States)

    Knox, Matthew A; Andriuzzi, Walter S; Buelow, Heather N; Takacs-Vesbach, Cristina; Adams, Byron J; Wall, Diana H

    2017-10-01

    Altered temperature profiles resulting in increased warming and freeze-thaw cycle (FTC) frequency pose great ecological challenges to organisms in alpine and polar ecosystems. We performed a laboratory microcosm experiment to investigate how temperature variability affects soil bacterial cell numbers, and abundance and traits of soil microfauna (the microbivorous nematode Scottnema lindsayae) from McMurdo Dry Valleys, Antarctica. FTCs and constant freezing shifted nematode body size distribution towards large individuals, driven by higher mortality among smaller individuals. FTCs reduced both bacterial and nematode abundance, but bacterial cell numbers also declined under warming, demonstrating decoupled consumer-prey responses. We predict that higher occurrence of FTCs in cold ecosystems will select for large body size within soil microinvertebrates and overall reduce their abundance. In contrast, warm temperatures without FTCs could lead to divergent responses in soil bacteria and their microinvertebrate consumers, potentially affecting energy and nutrient transfer rates in soil food webs of cold ecosystems. © 2017 John Wiley & Sons Ltd/CNRS.

  14. Biodegradation of the Nitramine Explosive CL-20

    OpenAIRE

    Trott, Sandra; Nishino, Shirley F.; Hawari, Jalal; Spain, Jim C.

    2003-01-01

    The cyclic nitramine explosive CL-20 (2,4,6,8,10,12-hexanitro-2,4,6,8,10,12-hexaazaisowurtzitane) was examined in soil microcosms to determine whether it is biodegradable. CL-20 was incubated with a variety of soils. The explosive disappeared in all microcosms except the controls in which microbial activity had been inhibited. CL-20 was degraded most rapidly in garden soil. After 2 days of incubation, about 80% of the initial CL-20 had disappeared. A CL-20-degrading bacterial strain, Agrobact...

  15. [Effects of rainfall intensity on rainfall infiltration and redistribution in soil on Loess slope land].

    Science.gov (United States)

    Li, Yi; Shao, Ming'an

    2006-12-01

    With simulation test, this paper studied the patterns of rainfall infiltration and redistribution in soil on typical Loess slope land, and analyzed the quantitative relations between the infiltration and redistribution and the movement of soil water and mass, with rainfall intensity as the main affecting factor. The results showed that rainfall intensity had significant effects on the rainfall infiltration and water redistribution in soil, and the microcosmic movement of soil water. The larger the rainfall intensity, the deeper the wetting front of rainfall infiltration and redistribution was, and the wetting front of soil water redistribution had a slower increase velocity than that of rainfall infiltration. The power function of the wetting front with time, and also with rainfall intensity, was fitted well. There was also a quantitative relation between the wetting front of rainfall redistribution and the duration of rainfall. The larger the rainfall intensity, the higher the initial and steady infiltration rates were, and the cumulative infiltration increased faster with time. Moreover, the larger the rainfall intensity, the smaller the wetting front difference was at the top and the end of the slope. With the larger rainfall intensity, both the difference of soil water content and its descending trend between soil layers became more obvious during the redistribution process on slope land.

  16. Leaching of zinc from rubber infill on artificial turf (football pitches)

    NARCIS (Netherlands)

    Verschoor AJ; LER

    2007-01-01

    Many artificial football pitches are treated with a rubber infill made of recycled tyres. From this material zinc leaches to the soil, groundwater and surface water. [This can present significant environmental risks, particularly for aquatic life.] Human health risks posed by leaching of zinc are

  17. Pulse frequency and soil-litter mixing alter the control of cumulative precipitation over litter decomposition.

    Science.gov (United States)

    Joly, François-Xavier; Kurupas, Kelsey L; Throop, Heather L

    2017-09-01

    Macroclimate has traditionally been considered the predominant driver of litter decomposition. However, in drylands, cumulative monthly or annual precipitation typically fails to predict decomposition. In these systems, the windows of opportunity for decomposer activity may rather depend on the precipitation frequency and local factors affecting litter desiccation, such as soil-litter mixing. We used a full-factorial microcosm experiment to disentangle the relative importance of cumulative precipitation, pulse frequency, and soil-litter mixing on litter decomposition. Decomposition, measured as litter carbon loss, saturated with increasing cumulative precipitation when pulses were large and infrequent, suggesting that litter moisture no longer increased and/or microbial activity was no longer limited by water availability above a certain pulse size. More frequent precipitation pulses led to increased decomposition at high levels of cumulative precipitation. Soil-litter mixing consistently increased decomposition, with greatest relative increase (+194%) under the driest conditions. Collectively, our results highlight the need to consider precipitation at finer temporal scale and incorporate soil-litter mixing as key driver of decomposition in drylands. © 2017 by the Ecological Society of America.

  18. Predicting Soluble Nickel in Soils Using Soil Properties and Total Nickel.

    Science.gov (United States)

    Zhang, Xiaoqing; Li, Jumei; Wei, Dongpu; Li, Bo; Ma, Yibing

    2015-01-01

    Soil soluble nickel (Ni) concentration is very important for determining soil Ni toxicity. In the present study, the relationships between soil properties, total and soluble Ni concentrations in soils were developed in a wide range of soils with different properties and climate characteristics. The multiple regressions showed that soil pH and total soil Ni concentrations were the most significant parameters in predicting soluble Ni concentrations with the adjusted determination coefficients (Radj2) values of 0.75 and 0.68 for soils spiked with soluble Ni salt and the spiked soils leached with artificial rainwater to mimic field conditions, respectively. However, when the soils were divided into three categories (pH 8), they obtained better predictions with Radj2 values of 0.78-0.90 and 0.79-0.94 for leached and unleached soils, respectively. Meanwhile, the other soil properties, such as amorphous Fe and Al oxides and clay, were also found to be important for determining soluble Ni concentrations, indicating that they were also presented as active adsorbent surfaces. Additionally, the whole soil speciation including bulk soil properties and total soils Ni concentrations were analyzed by mechanistic speciation models WHAM VI and Visual MINTEQ3.0. It was found that WHAM VI provided the best predictions for the soils with pH 8. The Visual MINTEQ3.0 could provide better estimation for pH 8. These results indicated the possibility and applicability of these models to predict soil soluble Ni concentration by soil properties.

  19. Investigation into ammonia stress on Cyperus alternifolius and its impact on nutrient removal in microcosm experiments.

    Science.gov (United States)

    Tao, Wendong; Han, Jianqiu; Li, Hanyan

    2015-11-01

    Ammonia stress on plants has been investigated at discrete ammonia concentrations in constructed wetlands. This study introduced a Gaussian model to simulate the kinetics of ammonia stress and investigated reversible and irreversible ammonia stress on Cyperus alternifolius in wetland-like microcosms. Ammonia stress on plant weight increase and oxygen release potential started at weekly ammonia concentrations of 27 and 28 mg N/L, reached 50% inhibition at 178 and 158 mg N/L, and resulted in lethal effects at 311 and 303 mg N/L, respectively. The stress of one-time ammonia concentrations up to 400 mg N/L could be reversible. Ammonia concentrations constantly above 219 mg N/L exerted irreversible stress. In the microcosms with ammonia concentrations above the 50% inhibition levels, plants played a minor role in nitrogen removal. Nitrogen removal performance was not affected considerably by ammonia stress. Orthophosphate removal was suppressed by ammonia stress due to less plant uptake. Design and operation of constructed wetlands should consider wastewater ammonia concentration so that the integrity of constructed wetland ecosystems can be maintained. Copyright © 2015 Elsevier Ltd. All rights reserved.

  20. Effect of nutrient and selective inhibitor amendments on methane oxidation, nitrous oxide production, and key gene presence and expression in landfill cover soils: characterization of the role of methanotrophs, nitrifiers, and denitrifiers.

    Science.gov (United States)

    Lee, Sung-Woo; Im, Jeongdae; Dispirito, Alan A; Bodrossy, Levente; Barcelona, Michael J; Semrau, Jeremy D

    2009-11-01

    Methane and nitrous oxide are both potent greenhouse gasses, with global warming potentials approximately 25 and 298 times that of carbon dioxide. A matrix of soil microcosms was constructed with landfill cover soils collected from the King Highway Landfill in Kalamazoo, Michigan and exposed to geochemical parameters known to affect methane consumption by methanotrophs while also examining their impact on biogenic nitrous oxide production. It was found that relatively dry soils (5% moisture content) along with 15 mg NH (4) (+) (kg soil)(-1) and 0.1 mg phenylacetylene(kg soil)(-1) provided the greatest stimulation of methane oxidation while minimizing nitrous oxide production. Microarray analyses of pmoA showed that the methanotrophic community structure was dominated by Type II organisms, but Type I genera were more evident with the addition of ammonia. When phenylacetylene was added in conjunction with ammonia, the methanotrophic community structure was more similar to that observed in the presence of no amendments. PCR analyses showed the presence of amoA from both ammonia-oxidizing bacteria and archaea, and that the presence of key genes associated with these cells was reduced with the addition of phenylacetylene. Messenger RNA analyses found transcripts of pmoA, but not of mmoX, nirK, norB, or amoA from either ammonia-oxidizing bacteria or archaea. Pure culture analyses showed that methanotrophs could produce significant amounts of nitrous oxide, particularly when expressing the particulate methane monooxygenase (pMMO). Collectively, these data suggest that methanotrophs expressing pMMO played a role in nitrous oxide production in these microcosms.

  1. Effects of a phosphinothricin based herbicide on selected groups of soil microorganisms.

    Science.gov (United States)

    Pampulha, M E; Ferreira, M A S S; Oliveira, A

    2007-08-01

    The effects of the herbicide glufosinate-ammonium on soil microbial populations and activity were observed in a laboratory microcosms over a 40 day period. Culturable aerobic bacteria, fungi and actinomycetes, the fundamental groups of heterotrophic microorganisms, were studied. Nitrifiers, considered a very sensitive group to these compounds were also evaluated. Since herbicides have been found to inhibit decomposition of cellulose in the soil, the effects of glufosinate on cellulolytic bacteria and fungi were determined. Dehydrogenase activity as a measure of microbial activity was another parameter considered. Both stimulating and inhibitory effects on microbial populations were observed, depending on concentration of the herbicide and the period of incubation. A severe inhibiting effect of glufosinate on dehydrogenase activity was found. We concluded that the widespread use of this herbicide may have possible injurious effects on soil microorganisms and their activities. The toxicity exerted by glufosinate may lead to a shift in microbial community structure tending toward a significant loss in functional diversity. Dehydrogenase activity was shown to be an important indicator of glufosinate side-effects.

  2. Visual Representations of Microcosm in Textbooks of Chemistry: Constructing a Systemic Network for Their Main Conceptual Framework

    Science.gov (United States)

    Papageorgiou, George; Amariotakis, Vasilios; Spiliotopoulou, Vasiliki

    2017-01-01

    The main objective of this work is to analyse the visual representations (VRs) of the microcosm depicted in nine Greek secondary chemistry school textbooks of the last three decades in order to construct a systemic network for their main conceptual framework and to evaluate the contribution of each one of the resulting categories to the network.…

  3. Nutrient availability affects pigment production but not growth in lichens of biological soil crusts

    Science.gov (United States)

    Bowker, M.A.; Koch, G.W.; Belnap, J.; Johnson, N.C.

    2008-01-01

    Recent research suggests that micronutrients such as Mn may limit growth of slow-growing biological soil crusts (BSCs) in some of the drylands of the world. These soil surface communities contribute strongly to arid ecosystem function and are easily degraded, creating a need for new restoration tools. The possibility that Mn fertilization could be used as a restoration tool for BSCs has not been tested previously. We used microcosms in a controlled greenhouse setting to investigate the hypothesis that Mn may limit photosynthesis and consequently growth in Collema tenax, a dominant N-fixing lichen found in BSCs worldwide. We found no evidence to support our hypothesis; furthermore, addition of other nutrients (primarily P, K, and Zn) had a suppressive effect on gross photosynthesis (P = 0.05). We also monitored the growth and physiological status of our microcosms and found that other nutrients increased the production of scytonemin, an important sunscreen pigment, but only when not added with Mn (P = 0.01). A structural equation model indicated that this effect was independent of any photosynthesis-related variable. We propose two alternative hypotheses to account for this pattern: (1) Mn suppresses processes needed to produce scytonemin; and (2) Mn is required to suppress scytonemin production at low light, when it is an unnecessary photosynthate sink. Although Mn fertilization does not appear likely to increase photosynthesis or growth of Collema, it could have a role in survivorship during environmentally stressful periods due to modification of scytonemin production. Thus, Mn enrichment should be studied further for its potential to facilitate BSC rehabilitation. ?? 2008 Elsevier Ltd.

  4. Biofumigation for control of pale potato cyst nematodes: activity of brassica leaf extracts and green manures on Globodera pallida in vitro and in soil.

    Science.gov (United States)

    Lord, James S; Lazzeri, Luca; Atkinson, Howard J; Urwin, Peter E

    2011-07-27

    The effects of brassica green manures on Globodera pallida were assessed in vitro and in soil microcosms. Twelve of 22 brassica accessions significantly inhibited the motility of G. pallida infective juveniles in vitro. Green manures of selected brassicas were then incorporated into soil containing encysted eggs of G. pallida. Their effect on egg viability was estimated by quantifying nematode actin 1 mRNA by RT-qPCR. The leaf glucosinolate profiles of the plants were determined by high-performance liquid chromatography. Three Brassica juncea lines (Nemfix, Fumus, and ISCI99) containing high concentrations of 2-propenyl glucosinolate were the most effective, causing over 95% mortality of encysted eggs of G. pallida in polyethylene-covered soil. The toxic effects of green manures were greater in polyethylene-covered than in open soil. Toxicity in soil correlated with the concentration of isothiocyanate-producing glucosinolate but not total glucosinolate in green manures.

  5. Distribution and behavior of {sup 137}Cs in undisturbed soil

    Energy Technology Data Exchange (ETDEWEB)

    Satta, Naoya [Kyoto Univ., Kumatori, Osaka (Japan). Research Reactor Inst.

    1996-04-01

    The depth distribution of {sup 137}Cs in soils which has not been artificially disturbed for 100 years was compared to fallout history. The model of {sup 137}Cs distribution rate was established to estimate fallout history from soil samples. (J.P.N.)

  6. Effect of Shadowing on Survival of Bacteria under Conditions Simulating the Martian Atmosphere and UV Radiation▿ †

    Science.gov (United States)

    Osman, Shariff; Peeters, Zan; La Duc, Myron T.; Mancinelli, Rocco; Ehrenfreund, Pascale; Venkateswaran, Kasthuri

    2008-01-01

    Spacecraft-associated spores and four non-spore-forming bacterial isolates were prepared in Atacama Desert soil suspensions and tested both in solution and in a desiccated state to elucidate the shadowing effect of soil particulates on bacterial survival under simulated Martian atmospheric and UV irradiation conditions. All non-spore-forming cells that were prepared in nutrient-depleted, 0.2-μm-filtered desert soil (DSE) microcosms and desiccated for 75 days on aluminum died, whereas cells prepared similarly in 60-μm-filtered desert soil (DS) microcosms survived such conditions. Among the bacterial cells tested, Microbacterium schleiferi and Arthrobacter sp. exhibited elevated resistance to 254-nm UV irradiation (low-pressure Hg lamp), and their survival indices were comparable to those of DS- and DSE-associated Bacillus pumilus spores. Desiccated DSE-associated spores survived exposure to full Martian UV irradiation (200 to 400 nm) for 5 min and were only slightly affected by Martian atmospheric conditions in the absence of UV irradiation. Although prolonged UV irradiation (5 min to 12 h) killed substantial portions of the spores in DSE microcosms (∼5- to 6-log reduction with Martian UV irradiation), dramatic survival of spores was apparent in DS-spore microcosms. The survival of soil-associated wild-type spores under Martian conditions could have repercussions for forward contamination of extraterrestrial environments, especially Mars. PMID:18083857

  7. Holistic study of an aquatic microcosm: theoretical and practical implications

    Energy Technology Data Exchange (ETDEWEB)

    Heath, R.T.

    1979-01-01

    The behavior of any system cannot by understood fully unless it is investigated as an intact unit over a range of states. The main task of holistic investigation is to determine the patterns of the set of responses and state transitions of a system and to examine the state space for trends, phases, and thresholds. Small laboratory ecosystems are ideal tools for holistic investigation of ecosystem function, because they are replicable and state settable. A small aquatic microcosm was characterized holistically as an example of this approach. Comparison of the nominal behavior of this system with its behavior under various degrees of cadmium stress (1, 10, 100 ppM Cd) indicated that holistic investigation of such systems is a sensitive and rapid means of assessing stress at the community level of organization.

  8. HONO (nitrous acid) emissions from acidic northern soils

    Science.gov (United States)

    Maljanen, Marja; Yli-Pirilä, Pasi; Joutsensaari, Jorma; Martikainen, Pertti J.

    2015-04-01

    The photolysis of HONO (nitrous acid) is an important source of OH radical, the key oxidizing agent in the atmosphere, contributing also to removal of atmospheric methane (CH4), the second most important greenhouse gas after carbon dioxide (CO2). The emissions of HONO from soils have been recently reported in few studies. Soil HONO emissions are regarded as missing sources of HONO when considering the chemical reactions in the atmosphere. The soil-derived HONO has been connected to soil nitrite (NO2-) and also directly to the activity of ammonia oxidizing bacteria, which has been studied with one pure culture. Our hypothesis was that boreal acidic soils with high nitrification activity could be also sources of HONO and the emissions of HONO are connected with nitrification. We selected a range of dominant northern acidic soils and showed in microcosm experiments that soils which have the highest nitrous oxide (N2O) and nitric oxide (NO) emissions (drained peatlands) also have the highest HONO production rates. The emissions of HONO are thus linked to nitrogen cycle and also NO and N2O emissions. Natural peatlands and boreal coniferous forests on mineral soils had the lowest HONO emissions. It is known that in natural peatlands with high water table and in boreal coniferous forest soils, low nitrification activity (microbial production of nitrite and nitrate) limits their N2O production. Low availability of nitrite in these soils is the likely reason also for their low HONO production rates. We also studied the origin of HONO in one peat soil with acetylene and other nitrification inhibitors and we found that HONO production is not closely connected to ammonium oxidation (nitrification). Acetylene blocked NO emissions but did not affect HONO or N2O emissions, thus there is another source behind HONO emission from these soils than ammonium oxidation. It is still an open question if this process is microbial or chemical origin.

  9. Factors affecting soil erosion in Beijing mountain forestlands | Zhang ...

    African Journals Online (AJOL)

    The role of regions, vegetation types and forest stand density in controlling soil erosion were investigated in Beijing mountain forest, China. The main objective was to develop some models to estimate soil erosion under different forest conditions including regions, vegetation type, and stand density as influenced by artificial ...

  10. Trophic structure and feeding rates of forest soil invertebrate populations

    Energy Technology Data Exchange (ETDEWEB)

    McBrayer, J F; Reichle, D E

    1971-01-01

    Trophic level relationships of a soil invertebrate community were determined using the transient behavior of cesium-137 in experimental soil microcosms. Feeding rates were estimated from radionuclide mass balance equations using radiocesium uptake coefficients, equilibrium concentrations of /sup 137/Cs in consumers, and /sup 137/Cs composition of food bases. The fungivore trophic level included Scatopsidae larvae (Diptera), Enchytraeida (Annelida), Entomobryidae and Onychiuridae (Collembola), Rhodacaridae (Mesostigmata), and Oribatulidae, Camasiidae, Carabodidae, and Cymbaeremaeidae (Oribatei). Approximately 60% of the total faunal biomass occurred in the fungivore trophic level. Fungivores averaged 7.0 +/- 2.4% dry body weight ingested per day. Cecidomyiidae larvae (Diptera), Diplopoda, Isotomidae (Collembola), Uropodina, and Phthiracaridae (Oribatei) were determined to be surface-feeding saprophages. Subsurface-feeding saprophages included Symphyla, Cillibidae (Uropidina), and Palaeacaridae and Epilohmannidae (Oribatei). Surface-feeding saprophages averaged 1.0 +/- 0.4% dry body weight ingested per day. Feeding rates were not calculated for saprophages feeding within the mineral soil horizon. Predators included Dolichopodidae larvae (Diptera), gamasine mites, and the Scutacaridae and other prostigmatid mites. Predators averaged 2.5 +/- 1.0% dry body weight ingested per day. 15 references, 3 figures, 3 tables.

  11. SUPERFUND TREATABILITY CLEARINGHOUSE: BDAT FOR SOLIDIFICATION/STABILIZATION TECHNOLOGY FOR SUPERFUND SOILS (DRAFT FINAL REPORT)

    Science.gov (United States)

    This report evaluates the performance of solidification as a method for treating solids from Superfund sites. Tests were conducted on four different artificially contaminated soils which are representative of soils found at the sites. Contaminated soils were solidified us...

  12. Remediation of sandy soils contaminated with hydrocarbons and halogenated hydrocarbons by soil vapour extraction.

    Science.gov (United States)

    Albergaria, José Tomás; Alvim-Ferraz, Maria da Conceição M; Delerue-Matos, Cristina

    2012-08-15

    This paper presents the study of the remediation of sandy soils containing six of the most common contaminants (benzene, toluene, ethylbenzene, xylene, trichloroethylene and perchloroethylene) using soil vapour extraction (SVE). The influence of soil water content on the process efficiency was evaluated considering the soil type and the contaminant. For artificially contaminated soils with negligible clay contents and natural organic matter it was concluded that: (i) all the remediation processes presented efficiencies above 92%; (ii) an increase of the soil water content led to a more time-consuming remediation; (iii) longer remediation periods were observed for contaminants with lower vapour pressures and lower water solubilities due to mass transfer limitations. Based on these results an easy and relatively fast procedure was developed for the prediction of the remediation times of real soils; 83% of the remediation times were predicted with relative deviations below 14%. Copyright © 2012 Elsevier Ltd. All rights reserved.

  13. Effects of soil macrofauna on other soil biota and soil formation in reclaimed and unreclaimed post mining sites: Results of a field microcosm experiment

    Czech Academy of Sciences Publication Activity Database

    Frouz, Jan; Elhottová, Dana; Kuráž, V.; Šourková, Monika

    2006-01-01

    Roč. 33, č. 3, (2006), s. 308-320 ISSN 0929-1393 R&D Projects: GA ČR(CZ) GA526/01/1055; GA ČR(CZ) GA526/03/1259; GA AV ČR(CZ) 1QS600660505 Institutional research plan: CEZ:AV0Z6066911 Keywords : fauna * soil formation * microbial community Subject RIV: EH - Ecology, Behaviour Impact factor: 1.929, year: 2006

  14. Comparison of the Effects of Phenylhydrazine Hydrochloride and Dicyandiamide on Ammonia-Oxidizing Bacteria and Archaea in Andosols

    Directory of Open Access Journals (Sweden)

    Wenjie Yang

    2017-11-01

    Full Text Available Dicyandiamide, a routinely used commercial nitrification inhibitor (NI, inhibits ammonia oxidation catalyzed by ammonia monooxygenase (AMO. Phenylhydrazine hydrochloride has shown considerable potential for the development of next-generation NIs targeting hydroxylamine dehydrogenase (HAO. The effects of the AMO inhibitor and the HAO inhibitor on ammonia-oxidizing bacteria (AOB and ammonia-oxidizing archaea (AOA present in agricultural soils have not been compared thus far. In the present study, the effects of the two inhibitors on soil nitrification and the abundance of AOA and AOB as well as their community structure were investigated in a soil microcosm using quantitative polymerase chain reaction and pyrosequencing. The net nitrification rates and the growth of AOA and AOB in this soil microcosm were inhibited by both NIs. Both NIs had limited effect on the community structure of AOB and no effect on that of AOA in this soil microcosm. The effects of phenylhydrazine hydrochloride were similar to those of dicyandiamide. These results indicated that organohydrazine-based NIs have potential for the development of next-generation NIs targeting HAO in the future.

  15. Microbial Community Dynamics in Soil Depth Profiles Over 120,000 Years of Ecosystem Development

    Directory of Open Access Journals (Sweden)

    Stephanie Turner

    2017-05-01

    Full Text Available Along a long-term ecosystem development gradient, soil nutrient contents and mineralogical properties change, therefore probably altering soil microbial communities. However, knowledge about the dynamics of soil microbial communities during long-term ecosystem development including progressive and retrogressive stages is limited, especially in mineral soils. Therefore, microbial abundances (quantitative PCR and community composition (pyrosequencing as well as their controlling soil properties were investigated in soil depth profiles along the 120,000 years old Franz Josef chronosequence (New Zealand. Additionally, in a microcosm incubation experiment the effects of particular soil properties, i.e., soil age, soil organic matter fraction (mineral-associated vs. particulate, O2 status, and carbon and phosphorus additions, on microbial abundances (quantitative PCR and community patterns (T-RFLP were analyzed. The archaeal to bacterial abundance ratio not only increased with soil depth but also with soil age along the chronosequence, coinciding with mineralogical changes and increasing phosphorus limitation. Results of the incubation experiment indicated that archaeal abundances were less impacted by the tested soil parameters compared to Bacteria suggesting that Archaea may better cope with mineral-induced substrate restrictions in subsoils and older soils. Instead, archaeal communities showed a soil age-related compositional shift with the Bathyarchaeota, that were frequently detected in nutrient-poor, low-energy environments, being dominant at the oldest site. However, bacterial communities remained stable with ongoing soil development. In contrast to the abundances, the archaeal compositional shift was associated with the mineralogical gradient. Our study revealed, that archaeal and bacterial communities in whole soil profiles are differently affected by long-term soil development with archaeal communities probably being better adapted to

  16. Quantification Of Erosion Rates Of Agriculturally Used Soils By Artificial

    Science.gov (United States)

    Jha, Abhinand

    2010-05-01

    0.0.1 1. Introduction to soil erosion measurement by radionuclides Soil erosion by water, wind and tillage affects both agriculture and the natural environment. Studying this phenomenon would be one of the advancements in science. Soil erosion occurs worldwide and since the last two decades it has been a main topic of discussion all over the world. The use of environmental radionuclides such as 90Sr, 137Cs to study medium term soil erosion (40 yrs) started in the early 1990's. Using these new techniques better knowledge about erosion can be gained and this knowledge can be implemented for erosion risk management. The erosion and sedimentation study by using man-made and natural radioisotopes is a key technique, which has developed over the past 30 years. Fallout 137Cs and Cosmogenic 7Be are radionuclides that have been used to provide independent measurements of soil-erosion and sediment-deposition rates and patterns [1] [2] [3] [4]. Erosion measurements using radionuclides 137Cs, 7Be Caesium-137 from atmospheric nuclear-weapons tests in the 1950s and 1960s (Fig.1) is a unique tracer of erosion and sedimentation, since there are no natural sources of 137Cs. Unique events such as the Chernobyl accident in April 1986 caused regional dispersal of 137Cs that affects the total global deposition budget. This yearly pattern of fallout can be used to develop a chronology of deposition horizons in lakes, reservoirs, and floodplains. 137Cs can be easily measured by gamma spectroscopy. Using 137Cs is a fast and cheap method to study erosion-deposition processes compared to the traditional methods like silt bags. PIC Figure 1: Global 137Cs fallout (Modified from SAAS Bulletin 353, Part E, DDR, 1986) When 137Cs, 7Be reach the soil surface by wet and dry deposition, they are quickly and strongly adsorbed by ion exchange and are essentially non exchangeable in most environments. Each radionuclide is distributed differently in the soil because of differences in half-lives (30 yrs

  17. Microcosm studies on iron and arsenic mobilization from aquifer sediments under different conditions of microbial activity and carbon source

    Science.gov (United States)

    Duan, Mengyu; Xie, Zuoming; Wang, Yanxin; Xie, Xianjun

    2009-05-01

    Microcosm experiments were conducted to understand the mechanism of microbially mediated mobilization of Fe and As from high arsenic aquifer sediments. Arsenic-resistant strains isolated from aquifer sediments of a borehole specifically drilled for this study at Datong basin were used as inoculated strains, and glucose and sodium acetate as carbon sources for the experiments. In abiotic control experiments, the maximum concentrations of Fe and As were only 0.47 mg/L and 0.9 μg/L, respectively. By contrast, the maximum contents of Fe and As in anaerobic microcosm experiments were much higher (up to 1.82 mg/L and 12.91 μg/L, respectively), indicating the crucial roles of microbial activities in Fe and As mobilization. The observed difference in Fe and As release with different carbon sources may be related to the difference in growth pattern and composition of microbial communities that develop in response to the type of carbon sources.

  18. IMPACT OF OIL ON THE MECHANICAL PROPERTIES OF SOIL SUBSIDENCE

    Directory of Open Access Journals (Sweden)

    Алексей Алексеевич Бурцев

    2016-08-01

    Full Text Available The paper studied the effect of oil content on the mechanical properties of soil subsidence - Ek modulus and compressibility factor m0, obtained in the laboratory with the help of artificial impregnation oil soil samples. A comparison of the above parameters with samples of the same soil in the natural and water-saturated conditions has been perfomed.

  19. Crop Performance and Soil Properties in Two Artificially-Eroded Soils in North-Central Alberta

    Energy Technology Data Exchange (ETDEWEB)

    Izaurralde, R Cesar C.; Malhi, S. S.; Nyborg, M.; Solberg, E. D.; Quiroga Jakas, Maria C.

    2006-09-01

    Field experiments were conducted from 1991 to 1995 at Josephburg (Orthic Black Chernozem, Typic Cryoboroll) and Cooking Lake (Orthic Gray Luvisol, Typic Cryoboralf), Alberta, to determine impact of topsoil removal on selected soil properties, N-mineralization potential and crop yield, and effectiveness of various amendments for restoring the productivity of eroded soils. The simulated-erosion levels were established in the autumn of 1990 by removing 20 cm topsoil in 5-cm depth increments. The four amendments were: control, addition of 5 cm of topsoil, fertilizers to supply 100 kg N ha-1 and 20 kg P ha-1, and cattle manure at 75 Mg ha-1. Topsoil and manure were applied once in the autumn of 1990, while fertilizers were applied annually from 1991 to 1995. Available N and P, total C, N and P, and N-mineralization potential decreased, while bulk density increased with increasing depth of topsoil removal. Tiller number, plant height, spike density, thousand kernel weight, and leaf area index decreased with simulated erosion. Grain yield reductions due to simulated soil erosion were either linear or curvilinear functions of nutrient removal. Application of N and P fertilizers and manure improved grain yield and reduced the impact of yield loss due to erosion. Return of 5 cm of topsoil also increased grain yield, but to a lesser extent than manure or fertilizers. Grain yields were maximized when fertilizers were also applied to organic amendment treatments. In conclusion, the findings suggest the importance of integrated use of organic amendments and chemical fertilizers for best crop yields on severely-eroded soils.

  20. Biodegradation of pentachloronitrobenzene by Cupriavidus sp. YNS-85 and its potential for remediation of contaminated soils.

    Science.gov (United States)

    Teng, Ying; Wang, Xiaomi; Zhu, Ye; Chen, Wei; Christie, Peter; Li, Zhengao; Luo, Yongming

    2017-04-01

    Pentachloronitrobenzene (PCNB) is a toxic chlorinated nitroaromatic compound. However, only a few bacteria have been reported to be able to utilize PCNB. In the present study, one pentachloronitrobenzene (PCNB)-degrading bacterium, Cupriavidus sp. YNS-85, was isolated from a contaminated Panax notoginseng plantation. The strain co-metabolized 200 mg L -1 PCNB in aqueous solution with a removal rate of 73.8% after 5 days. The bacterium also degraded PCNB effectively under acid conditions (pH 4-6) and showed resistance to toxic trace elements (arsenic, copper, and cadmium). Its ability to utilize proposed PCNB intermediates as sole carbon sources was also confirmed. The soil microcosm experiment further demonstrated that bacterial bioaugmentation enhanced the removal of PCNB (37.8%) from soil and the accumulation of pentachloroaniline (89.3%) after 30 days. Soil enzyme activity and microbial community functional diversity were positively influenced after bioremediation. These findings indicate that Cupriavidus sp. YNS-85 may be a suitable inoculant for in situ bioremediation of PCNB-polluted sites, especially those with acid soils co-contaminated with heavy metal(loid)s.